Query 014200
Match_columns 429
No_of_seqs 205 out of 3265
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 5E-41 1.7E-45 337.9 25.0 342 38-421 199-603 (636)
2 4eco_A Uncharacterized protein 100.0 4.3E-41 1.5E-45 338.5 24.4 334 54-425 192-586 (636)
3 3rgz_A Protein brassinosteroid 100.0 3.2E-40 1.1E-44 339.5 24.2 274 44-317 268-558 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 1.1E-39 3.7E-44 334.1 27.5 343 38-422 441-844 (876)
5 3rgz_A Protein brassinosteroid 100.0 9.3E-40 3.2E-44 336.0 26.5 385 2-423 240-723 (768)
6 4ecn_A Leucine-rich repeat pro 100.0 1.4E-39 4.6E-44 333.3 27.2 328 60-425 440-826 (876)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-39 4.9E-44 327.0 26.3 223 156-419 303-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.4E-38 4.8E-43 319.8 30.5 291 9-311 33-413 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.5E-39 1.9E-43 322.8 27.3 403 3-419 51-561 (606)
10 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-38 5.8E-43 313.3 28.3 355 12-427 3-488 (520)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-38 9.7E-43 317.6 29.7 389 10-425 33-541 (606)
12 1o6v_A Internalin A; bacterial 100.0 2.1E-37 7.1E-42 301.0 33.4 352 6-424 43-394 (466)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-38 9E-43 314.1 26.7 378 9-419 26-511 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 2.3E-38 7.8E-43 316.0 25.1 386 9-419 28-532 (570)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-37 1.3E-41 306.2 28.6 359 8-427 30-517 (562)
16 2z63_A TOLL-like receptor 4, v 100.0 9.6E-37 3.3E-41 304.3 26.4 386 11-425 9-514 (570)
17 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-35 4.2E-40 302.3 34.2 401 9-422 25-521 (680)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-36 6E-41 301.0 25.2 382 8-425 4-493 (549)
19 3v47_A TOLL-like receptor 5B a 100.0 9.4E-36 3.2E-40 288.9 27.8 355 12-419 13-409 (455)
20 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-36 1.4E-40 311.9 26.9 402 9-424 24-545 (844)
21 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-35 1.1E-39 299.3 32.7 289 11-314 6-345 (680)
22 4fmz_A Internalin; leucine ric 100.0 9.7E-35 3.3E-39 271.6 31.4 304 43-418 42-346 (347)
23 1o6v_A Internalin A; bacterial 100.0 9.2E-35 3.1E-39 282.4 32.4 349 5-419 64-419 (466)
24 3bz5_A Internalin-J, INLJ; leu 100.0 3E-34 1E-38 276.9 32.2 342 5-425 38-395 (457)
25 1jl5_A Outer protein YOPM; leu 100.0 2.6E-34 9E-39 277.0 31.2 307 46-423 92-417 (454)
26 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-34 8.9E-39 290.3 30.6 163 227-428 417-588 (635)
27 1jl5_A Outer protein YOPM; leu 100.0 6.5E-34 2.2E-38 274.2 30.1 351 7-421 9-373 (454)
28 4fmz_A Internalin; leucine ric 100.0 2.6E-33 8.8E-38 261.9 33.1 307 5-393 40-346 (347)
29 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-34 2.3E-38 280.4 27.4 355 48-423 3-462 (520)
30 3o6n_A APL1; leucine-rich repe 100.0 7E-34 2.4E-38 270.0 25.3 304 44-419 44-353 (390)
31 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-33 6.5E-38 292.0 30.4 382 12-420 7-466 (844)
32 2id5_A Lingo-1, leucine rich r 100.0 3.2E-33 1.1E-37 272.6 28.7 312 12-394 14-334 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 8.3E-33 2.8E-37 266.8 28.7 305 42-421 39-355 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.5E-33 2.6E-37 275.3 28.6 333 44-423 30-491 (562)
35 3v47_A TOLL-like receptor 5B a 100.0 5E-33 1.7E-37 269.7 25.7 339 47-425 12-391 (455)
36 3oja_B Anopheles plasmodium-re 100.0 9.6E-33 3.3E-37 276.1 25.6 304 68-419 51-359 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 9.1E-32 3.1E-36 255.4 28.0 305 8-394 44-353 (390)
38 3oja_B Anopheles plasmodium-re 100.0 2.2E-30 7.6E-35 259.0 27.5 285 8-314 50-340 (597)
39 1xku_A Decorin; proteoglycan, 100.0 6.7E-30 2.3E-34 236.9 28.7 246 46-320 32-285 (330)
40 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-33 1.4E-37 270.7 7.0 367 9-419 3-441 (461)
41 2id5_A Lingo-1, leucine rich r 100.0 2.6E-30 8.8E-35 252.1 24.0 291 9-311 32-333 (477)
42 1xku_A Decorin; proteoglycan, 100.0 9.2E-30 3.1E-34 236.0 26.4 280 10-309 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.7E-30 3.3E-34 236.0 25.0 279 10-309 34-331 (332)
44 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-29 1.7E-33 251.7 30.7 337 10-393 53-580 (635)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4.1E-34 235.4 23.8 247 46-320 34-286 (332)
46 3g06_A SSPH2 (leucine-rich rep 100.0 7.7E-28 2.7E-32 238.9 27.3 291 68-428 40-342 (622)
47 3g06_A SSPH2 (leucine-rich rep 100.0 3.3E-27 1.1E-31 234.4 29.7 261 7-312 38-298 (622)
48 1z7x_W Ribonuclease inhibitor; 100.0 2E-30 6.8E-35 251.8 6.0 342 45-419 3-412 (461)
49 2z80_A TOLL-like receptor 2, v 99.9 3.4E-27 1.2E-31 220.8 17.8 274 67-420 30-316 (353)
50 1ogq_A PGIP-2, polygalacturona 99.9 4.6E-27 1.6E-31 215.8 16.9 243 138-419 51-305 (313)
51 3ogk_B Coronatine-insensitive 99.9 1.2E-28 4E-33 246.9 5.9 410 2-419 66-527 (592)
52 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-27 2.1E-31 215.0 14.3 244 45-289 50-306 (313)
53 2z66_A Variable lymphocyte rec 99.9 1.7E-26 5.7E-31 211.7 17.1 196 117-314 10-215 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 2.3E-26 7.7E-31 215.2 18.1 266 44-311 30-314 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 216.8 23.5 247 117-428 46-300 (440)
56 2z66_A Variable lymphocyte rec 99.9 5.3E-26 1.8E-30 208.4 20.1 241 12-289 10-262 (306)
57 4fcg_A Uncharacterized protein 99.9 7.3E-26 2.5E-30 209.1 18.8 223 45-268 81-316 (328)
58 3zyi_A Leucine-rich repeat-con 99.9 3E-25 1E-29 214.6 23.1 248 117-428 57-311 (452)
59 4fcg_A Uncharacterized protein 99.9 8.8E-26 3E-30 208.5 17.0 224 9-245 81-316 (328)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.8E-25 2E-29 199.3 19.7 221 46-288 33-261 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.3E-29 208.8 22.5 239 11-266 45-292 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-25 1.2E-29 200.9 15.4 200 9-220 32-238 (285)
63 3zyi_A Leucine-rich repeat-con 99.9 2.3E-24 7.9E-29 208.3 22.0 238 12-266 57-303 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.8E-25 1.3E-29 203.5 15.1 237 10-266 11-250 (317)
65 1wwl_A Monocyte differentiatio 99.9 5.1E-26 1.7E-30 208.9 9.2 240 8-266 42-309 (312)
66 2p1m_B Transport inhibitor res 99.9 1.8E-26 6.3E-31 231.1 4.9 401 3-419 60-520 (594)
67 3ogk_B Coronatine-insensitive 99.9 1.9E-25 6.6E-30 223.6 11.8 385 3-409 106-544 (592)
68 1wwl_A Monocyte differentiatio 99.9 4.7E-26 1.6E-30 209.2 5.9 242 66-312 41-310 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-25 5.8E-30 205.9 9.1 240 3-263 28-272 (317)
70 3oja_A Leucine-rich immune mol 99.9 3.7E-24 1.3E-28 208.2 14.0 230 92-413 35-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 1E-22 3.5E-27 183.6 20.5 222 12-267 10-238 (276)
72 3oja_A Leucine-rich immune mol 99.9 3.3E-23 1.1E-27 201.4 17.4 215 44-266 33-250 (487)
73 2p1m_B Transport inhibitor res 99.9 3.1E-25 1.1E-29 222.1 0.5 388 3-415 99-541 (594)
74 1p9a_G Platelet glycoprotein I 99.9 5.6E-22 1.9E-26 179.7 19.0 197 44-243 9-208 (290)
75 1p9a_G Platelet glycoprotein I 99.9 1E-21 3.6E-26 177.9 20.1 199 65-266 7-208 (290)
76 1h6u_A Internalin H; cell adhe 99.9 4.8E-22 1.6E-26 181.9 17.2 195 44-270 40-234 (308)
77 2z62_A TOLL-like receptor 4, v 99.9 1.5E-21 5.2E-26 175.9 19.6 218 48-289 10-238 (276)
78 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.3E-26 177.2 20.2 198 5-224 37-234 (308)
79 2o6q_A Variable lymphocyte rec 99.9 2.9E-21 9.9E-26 173.4 20.3 195 47-243 18-218 (270)
80 2o6q_A Variable lymphocyte rec 99.9 2.2E-20 7.4E-25 167.7 21.5 197 69-267 17-219 (270)
81 2xwt_C Thyrotropin receptor; s 99.9 1.3E-21 4.6E-26 172.3 12.2 192 69-263 32-236 (239)
82 3cvr_A Invasion plasmid antige 99.9 4.4E-21 1.5E-25 188.2 16.9 217 161-428 60-288 (571)
83 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.5E-26 171.4 12.3 192 45-240 31-236 (239)
84 3rfs_A Internalin B, repeat mo 99.9 5.3E-21 1.8E-25 171.8 15.1 199 44-250 40-243 (272)
85 2ca6_A RAN GTPase-activating p 99.9 2E-22 7E-27 190.7 6.0 222 46-267 10-288 (386)
86 2ca6_A RAN GTPase-activating p 99.9 4.3E-22 1.5E-26 188.5 7.4 226 44-269 31-319 (386)
87 3goz_A Leucine-rich repeat-con 99.8 2.5E-21 8.7E-26 181.4 10.3 103 96-198 3-123 (362)
88 3rfs_A Internalin B, repeat mo 99.8 7.2E-20 2.5E-24 164.4 18.0 206 5-231 37-247 (272)
89 3cvr_A Invasion plasmid antige 99.8 4.5E-20 1.5E-24 181.1 17.3 182 185-423 60-249 (571)
90 4glp_A Monocyte differentiatio 99.8 4E-20 1.4E-24 169.4 14.6 219 69-289 65-308 (310)
91 2ast_B S-phase kinase-associat 99.8 7.1E-21 2.4E-25 176.6 8.9 241 47-290 49-308 (336)
92 4glp_A Monocyte differentiatio 99.8 2.7E-20 9.1E-25 170.6 11.5 222 89-312 62-308 (310)
93 3goz_A Leucine-rich repeat-con 99.8 7.3E-21 2.5E-25 178.3 6.9 197 45-241 22-264 (362)
94 3m19_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 156.6 17.7 128 185-314 15-147 (251)
95 3m19_A Variable lymphocyte rec 99.8 8.9E-19 3E-23 155.4 18.0 172 10-196 15-191 (251)
96 4ay9_X Follicle-stimulating ho 99.8 4.4E-19 1.5E-23 165.3 16.6 233 12-263 12-256 (350)
97 1h6t_A Internalin B; cell adhe 99.8 5.8E-19 2E-23 160.0 15.7 169 44-220 45-213 (291)
98 2ast_B S-phase kinase-associat 99.8 6.7E-20 2.3E-24 170.0 8.4 248 9-272 47-312 (336)
99 4ay9_X Follicle-stimulating ho 99.8 1.3E-18 4.5E-23 162.1 16.7 233 48-307 12-255 (350)
100 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 9E-23 155.6 18.0 176 5-201 42-217 (291)
101 1xeu_A Internalin C; cellular 99.8 9E-19 3.1E-23 156.2 11.5 173 182-397 17-189 (263)
102 1m9s_A Internalin B; cell inva 99.8 1.1E-17 3.8E-22 165.8 17.8 187 166-396 27-213 (605)
103 1xeu_A Internalin C; cellular 99.8 8.8E-18 3E-22 149.8 14.0 167 8-196 18-184 (263)
104 1m9s_A Internalin B; cell inva 99.8 1E-17 3.5E-22 166.1 15.7 171 44-222 42-212 (605)
105 2v9t_B SLIT homolog 2 protein 99.7 1.9E-17 6.5E-22 143.5 14.0 154 234-428 15-173 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.7E-22 143.4 13.5 112 277-427 59-173 (220)
107 2o6s_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 140.7 14.9 173 12-206 10-188 (208)
108 2xot_A Amphoterin-induced prot 99.7 3.4E-17 1.2E-21 153.1 15.0 171 12-197 21-202 (361)
109 2xot_A Amphoterin-induced prot 99.7 3.8E-17 1.3E-21 152.8 14.7 179 187-427 21-209 (361)
110 4ezg_A Putative uncharacterize 99.7 2E-17 6.7E-22 140.9 11.2 153 227-419 41-195 (197)
111 3e6j_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 139.9 15.9 148 11-173 21-172 (229)
112 4fs7_A Uncharacterized protein 99.7 4.7E-16 1.6E-20 147.2 21.1 326 36-408 62-393 (394)
113 4ezg_A Putative uncharacterize 99.7 7.8E-17 2.7E-21 137.2 13.7 149 44-197 43-194 (197)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.9E-21 138.6 14.7 147 12-173 14-166 (220)
115 2v9t_B SLIT homolog 2 protein 99.7 1.7E-16 5.7E-21 137.5 15.0 147 12-173 14-165 (220)
116 2o6s_A Variable lymphocyte rec 99.7 3.1E-16 1E-20 134.8 15.7 173 47-227 9-186 (208)
117 3e6j_A Variable lymphocyte rec 99.7 8.5E-16 2.9E-20 134.0 15.9 149 47-197 21-172 (229)
118 1dce_A Protein (RAB geranylger 99.7 1.1E-18 3.9E-23 171.9 -4.0 120 138-260 442-567 (567)
119 4b8c_D Glucose-repressible alc 99.6 2.4E-16 8.3E-21 160.1 9.9 195 9-217 173-369 (727)
120 1dce_A Protein (RAB geranylger 99.6 2E-17 6.7E-22 163.1 1.1 179 134-313 346-548 (567)
121 3sb4_A Hypothetical leucine ri 99.6 4.6E-16 1.6E-20 143.6 10.0 99 159-259 225-327 (329)
122 4fs7_A Uncharacterized protein 99.6 7E-15 2.4E-19 139.1 17.6 322 2-385 64-393 (394)
123 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7.2E-20 127.7 12.5 133 256-428 13-147 (193)
124 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.5E-20 127.6 11.1 60 358-419 79-140 (192)
125 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 126.1 8.8 131 69-200 25-163 (168)
126 4fdw_A Leucine rich hypothetic 99.6 8.1E-14 2.8E-18 131.4 21.8 207 45-261 113-331 (401)
127 4fdw_A Leucine rich hypothetic 99.6 2.2E-14 7.6E-19 135.3 17.6 255 9-287 113-382 (401)
128 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 123.9 10.2 132 44-176 23-163 (168)
129 4b8c_D Glucose-repressible alc 99.6 1.9E-15 6.4E-20 153.6 10.1 120 193-312 210-330 (727)
130 2je0_A Acidic leucine-rich nuc 99.6 4.6E-15 1.6E-19 120.2 9.1 123 45-168 17-148 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.6 4.6E-15 1.6E-19 123.8 9.2 134 39-173 13-153 (176)
132 2wfh_A SLIT homolog 2 protein 99.6 2.1E-14 7.2E-19 121.5 13.1 123 49-173 14-139 (193)
133 3sb4_A Hypothetical leucine ri 99.6 1.2E-14 4E-19 134.1 12.0 254 44-305 48-328 (329)
134 1w8a_A SLIT protein; signaling 99.6 3E-14 1E-18 120.6 12.0 124 48-173 11-139 (192)
135 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 117.5 9.1 126 66-192 15-148 (149)
136 4gt6_A Cell surface protein; l 99.5 3.3E-13 1.1E-17 127.6 20.1 315 21-416 51-389 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 117.7 10.4 133 63-196 14-152 (176)
138 4gt6_A Cell surface protein; l 99.5 3.7E-12 1.3E-16 120.4 22.0 307 57-417 51-369 (394)
139 2o6r_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 111.7 13.9 124 48-173 10-137 (177)
140 2o6r_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 111.9 12.8 60 358-419 77-138 (177)
141 1ds9_A Outer arm dynein; leuci 99.4 6.4E-15 2.2E-19 125.4 -3.9 117 56-174 36-154 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 3.9E-15 1.4E-19 126.7 -5.4 148 5-166 14-180 (198)
143 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 107.0 10.6 62 358-421 58-121 (174)
144 3g39_A Variable lymphocyte rec 99.4 2.7E-12 9.1E-17 106.1 10.7 61 358-420 55-117 (170)
145 2r9u_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 104.5 11.2 104 48-153 15-121 (174)
146 3g39_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 104.5 10.7 102 47-150 11-115 (170)
147 4h09_A Hypothetical leucine ri 99.3 3.6E-10 1.2E-14 106.1 21.7 138 180-321 213-355 (379)
148 3un9_A NLR family member X1; l 99.3 1.6E-12 5.6E-17 121.3 4.0 158 206-394 71-253 (372)
149 4h09_A Hypothetical leucine ri 99.2 1.2E-09 4.1E-14 102.5 22.8 259 43-320 44-308 (379)
150 3un9_A NLR family member X1; l 99.2 1.9E-12 6.5E-17 120.9 2.5 160 9-175 72-254 (372)
151 2ifg_A High affinity nerve gro 99.2 7.7E-11 2.6E-15 109.3 9.6 111 278-428 11-124 (347)
152 2ifg_A High affinity nerve gro 99.0 2.3E-09 7.8E-14 99.3 10.7 83 45-127 31-116 (347)
153 2ra8_A Uncharacterized protein 98.8 2.5E-09 8.7E-14 98.9 5.3 176 204-416 136-341 (362)
154 1io0_A Tropomodulin; LRR prote 98.8 1.9E-09 6.5E-14 90.1 3.9 107 44-150 35-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.7 1.2E-08 4E-13 85.2 5.0 115 60-174 28-165 (185)
156 2ra8_A Uncharacterized protein 98.6 4.9E-08 1.7E-12 90.3 6.6 58 205-264 277-341 (362)
157 1pgv_A TMD-1, tropomodulin TMD 98.1 2.1E-06 7.3E-11 71.2 4.4 106 44-149 40-169 (197)
158 3rw6_A Nuclear RNA export fact 98.0 2.2E-06 7.6E-11 75.1 3.2 78 65-143 167-257 (267)
159 3rw6_A Nuclear RNA export fact 97.9 2.1E-05 7.2E-10 68.9 7.2 105 7-121 139-258 (267)
160 3e4g_A ATP synthase subunit S, 97.9 2.8E-06 9.6E-11 69.1 1.5 89 275-394 61-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 1.9E-05 6.3E-10 65.5 5.7 112 61-172 34-169 (197)
162 3rfe_A Platelet glycoprotein I 97.9 1.5E-05 5.2E-10 61.8 4.9 63 360-428 11-76 (130)
163 3e4g_A ATP synthase subunit S, 97.8 1.6E-05 5.6E-10 64.6 4.5 81 229-309 60-150 (176)
164 3rfe_A Platelet glycoprotein I 97.0 0.00098 3.3E-08 51.5 5.4 34 70-103 33-67 (130)
165 2lz0_A Uncharacterized protein 79.3 1.9 6.4E-05 31.0 3.7 34 44-78 19-53 (100)
166 2lz0_A Uncharacterized protein 73.1 3.5 0.00012 29.5 3.7 37 63-100 15-52 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-41 Score=337.95 Aligned_cols=342 Identities=22% Similarity=0.284 Sum_probs=270.5
Q ss_pred CCcccccCCccEEEcCCCCCCc------------------cchhcc--CCCCCCEEECCCCCCC-CcchhhhCCCCCcEe
Q 014200 38 GDKWWEAVDLQKLILAHNNIEK------------------LKEDLR--NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSL 96 (429)
Q Consensus 38 ~~~~~~~~~L~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L 96 (429)
+..+.++++|++|++++|.++. +|..+. ++++|++|++++|.+. .+|..+.++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 4457778888888888888887 888777 8888888888888755 677788888888888
Q ss_pred ecCCCc-Ccc--CCccccCC------CCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccc-cCCccccccCCCcE
Q 014200 97 DVSFNS-IMK--IPDEIGSA------TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSK 164 (429)
Q Consensus 97 ~l~~~~-i~~--l~~~~~~~------~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~ 164 (429)
++++|. ++. +|..++.+ ++|++|++++|++..+|. .+..+++|++|++++|.+. .+| .+..+++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 888887 764 67766665 888888888888888887 7888888888888888888 777 7788888888
Q ss_pred EEccCCcccccChhhhhcccc-cceeecCCccCCcCCccccCCc--cCCeEeccCCcCcc-CCcccc-------ccCCCc
Q 014200 165 LDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLS--RLIRLDLHQNRILS-IPSSIS-------GCCSLA 233 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~~~-------~~~~L~ 233 (429)
|++++|.+..++.. +..++. |++|++++|.++.+|..+...+ +|+.|++++|.+.. .|..+. .+++|+
T Consensus 358 L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCCccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 88888888876655 777777 8888888888888887665544 78888888888874 455565 677888
Q ss_pred EEEcCCCCCCccChh-hcCCCCCCEEECCCCcCccccchhhcc---------ccCEEEccCCCCCCCCcccc--CCCCCC
Q 014200 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLSGLPPEIG--KMTTLR 301 (429)
Q Consensus 234 ~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~---------~L~~l~l~~n~l~~l~~~l~--~~~~L~ 301 (429)
+|++++|.++.+|.. +..+++|+.|++++|.++.++...+.. +|++|++++|.++.+|..+. .+++|+
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence 888888888888765 456888888888888888776654431 68888888888888888776 888888
Q ss_pred EEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccccccc------CCccc-cCCh
Q 014200 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE------GMNLS-AIPS 374 (429)
Q Consensus 302 ~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~------~~~i~-~~~~ 374 (429)
.|++++|.++++|.... ..++|+.|+++ +|++. .+|.
T Consensus 517 ~L~Ls~N~l~~ip~~~~------------------------------------~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 517 GIDLSYNSFSKFPTQPL------------------------------------NSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EEECCSSCCSSCCCGGG------------------------------------GCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred EEECCCCCCCCcChhhh------------------------------------cCCCCCEEECCCCcccccCcccccChH
Confidence 88888888876553322 12578888884 45555 7888
Q ss_pred hhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccc
Q 014200 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCIS 421 (429)
Q Consensus 375 ~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~ 421 (429)
.+..+++|++|+|++|+++.+|..+. ++|++|+ +++|++++++
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~--Ls~N~l~~~~ 603 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLD--IKDNPNISID 603 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEE--CCSCTTCEEE
T ss_pred HHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEE--CcCCCCcccc
Confidence 88889999999999999977888765 7899999 9999888754
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.3e-41 Score=338.46 Aligned_cols=334 Identities=17% Similarity=0.217 Sum_probs=294.1
Q ss_pred CCCCCccchhccCCCCCCEEECCCCCCCC------------------cchhhh--CCCCCcEeecCCCcCc-cCCccccC
Q 014200 54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSE------------------LPAAIG--ELHMLKSLDVSFNSIM-KIPDEIGS 112 (429)
Q Consensus 54 ~~~i~~l~~~~~~~~~L~~L~l~~~~i~~------------------~~~~l~--~l~~L~~L~l~~~~i~-~l~~~~~~ 112 (429)
.|+++.+|..+.++++|++|++++|.++. +|+.+. ++++|++|++++|.+. .+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 45777899999999999999999999997 899888 9999999999999765 77989999
Q ss_pred CCCcCEEecCCCC-CCc--CCccccCC------CCCCEEEcCCCccccCCc--cccccCCCcEEEccCCccc-ccChhhh
Q 014200 113 ATALVKFDCSSNQ-LKE--LPSSLGRC------LNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLT-VLSNNLI 180 (429)
Q Consensus 113 ~~~L~~L~l~~~~-l~~--~~~~~~~~------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~ 180 (429)
+++|++|++++|+ ++. +|..+..+ ++|++|++++|.++.+|. .+..+++|+.|++++|.+. .++ .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hh
Confidence 9999999999998 874 78777665 899999999999999998 8999999999999999998 676 58
Q ss_pred hcccccceeecCCccCCcCCccccCCcc-CCeEeccCCcCccCCccccccC--CCcEEEcCCCCCCc-cChhhc------
Q 014200 181 ASWTMLTELIASKNLLNGMPETIGSLSR-LIRLDLHQNRILSIPSSISGCC--SLAEFYMGNNALSA-LPAELG------ 250 (429)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~n~i~~-~~~~~~------ 250 (429)
..+++|++|++++|.++.+|..+..+++ |+.|++++|.++.+|..+...+ +|++|++++|.++. .|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 8999999999999999999988999999 9999999999999998777655 89999999999985 466676
Q ss_pred -CCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCCCccccC--------CCCCCEEEccCCCCCCccccccC
Q 014200 251 -KLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGK--------MTTLRKLLLTGNPLRTLRSSLVN 319 (429)
Q Consensus 251 -~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~ 319 (429)
.+++|+.|++++|.++.++...+. .+|++|++++|.++.+|..... +++|+.|++++|.++.++...+.
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 778999999999999988877654 5699999999999998765332 23999999999999887755432
Q ss_pred CCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCC------CCccc
Q 014200 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS------RNSIQ 393 (429)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls------~n~i~ 393 (429)
.. .++|+.|++++|+++.+|..+..+++|+.|+++ +|++.
T Consensus 510 ~~----------------------------------l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 510 TT----------------------------------LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp TT----------------------------------CTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred cc----------------------------------CCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 11 258899999999999999999999999999995 56777
Q ss_pred c-CChhhcccccceeeccccCCCcccccccccc
Q 014200 394 E-LPPELSSCASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 394 ~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
+ +|..+..+++|++|+ +++|+++.||+.+.
T Consensus 556 ~~~p~~l~~l~~L~~L~--Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQ--IGSNDIRKVNEKIT 586 (636)
T ss_dssp CCCCTTGGGCSSCCEEE--CCSSCCCBCCSCCC
T ss_pred ccChHHHhcCCCCCEEE--CCCCcCCccCHhHh
Confidence 6 999999999999999 99999999998754
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-40 Score=339.47 Aligned_cols=274 Identities=28% Similarity=0.372 Sum_probs=185.9
Q ss_pred cCCccEEEcCCCCCC-ccchhccC-CCCCCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCcc-ccCCCCcCE
Q 014200 44 AVDLQKLILAHNNIE-KLKEDLRN-LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDE-IGSATALVK 118 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~-~l~~~~~~-~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~-~~~~~~L~~ 118 (429)
+++|++|++++|.++ .+|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|.. +.++++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 344444444444444 44444333 355666666666555 44555666666666666666554 45544 555666666
Q ss_pred EecCCCCCC-cCCccccCCC-CCCEEEcCCCccc-cCCccccc--cCCCcEEEccCCcccccChhhhhcccccceeecCC
Q 014200 119 FDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (429)
Q Consensus 119 L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (429)
|++++|++. .+|..+..++ +|++|++++|.+. .++..+.. +++|+.|++++|.+....+..+..+++|++|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 666666555 4555555554 5666666666555 33444433 56677777777777655555577888888888888
Q ss_pred ccCC-cCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccc-c
Q 014200 194 NLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY-C 269 (429)
Q Consensus 194 ~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~-~ 269 (429)
|.+. ..|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++. +
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 8886 56777888888888888888887 56777888888999999888888 5678888888999999999888743 3
Q ss_pred chhh-ccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCC-Cccccc
Q 014200 270 VEAC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR-TLRSSL 317 (429)
Q Consensus 270 ~~~~-~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~-~~~~~~ 317 (429)
.... ..+|++|++++|.+++ +|..+.++++|+.|++++|+++ .+|...
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 3322 2358999999998885 7888888999999999998876 455443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-39 Score=334.05 Aligned_cols=343 Identities=20% Similarity=0.262 Sum_probs=288.8
Q ss_pred CCcccccCCccEEEcCCCCCCc------------------cchhcc--CCCCCCEEECCCCCCC-CcchhhhCCCCCcEe
Q 014200 38 GDKWWEAVDLQKLILAHNNIEK------------------LKEDLR--NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSL 96 (429)
Q Consensus 38 ~~~~~~~~~L~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L 96 (429)
+..+.++++|++|++++|.++. +|..+. ++++|+.|++++|.+. .+|..+.++++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4567789999999999999998 888876 9999999999999854 778899999999999
Q ss_pred ecCCCc-Ccc--CCccccC-------CCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200 97 DVSFNS-IMK--IPDEIGS-------ATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (429)
Q Consensus 97 ~l~~~~-i~~--l~~~~~~-------~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~ 164 (429)
++++|. ++. +|..++. +++|++|++++|.+..+|. .+..+++|++|++++|.++.+| .+..+++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence 999997 774 6765554 4599999999999999988 8999999999999999999888 8889999999
Q ss_pred EEccCCcccccChhhhhcccc-cceeecCCccCCcCCccccCCcc--CCeEeccCCcCccCCcc----cc--ccCCCcEE
Q 014200 165 LDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSR--LIRLDLHQNRILSIPSS----IS--GCCSLAEF 235 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~----~~--~~~~L~~L 235 (429)
|++++|.+..++.. +..+++ |++|++++|.++.+|..+...+. |+.|++++|.+...++. +. .+++|+.|
T Consensus 600 L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 600 LKLDYNQIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EECCSSCCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EECcCCccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 99999999877655 788888 99999999999988877766654 99999999998754322 22 44589999
Q ss_pred EcCCCCCCccChhh-cCCCCCCEEECCCCcCccccchhhcc---------ccCEEEccCCCCCCCCcccc--CCCCCCEE
Q 014200 236 YMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLSGLPPEIG--KMTTLRKL 303 (429)
Q Consensus 236 ~l~~n~i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~---------~L~~l~l~~n~l~~l~~~l~--~~~~L~~L 303 (429)
++++|.++.+|..+ ..+++|+.|++++|.+..++...+.. +|++|++++|+++.+|..+. .+++|+.|
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 99999999998765 58899999999999999877765442 79999999999999998887 89999999
Q ss_pred EccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccC------Cccc-cCChhh
Q 014200 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG------MNLS-AIPSEI 376 (429)
Q Consensus 304 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~------~~i~-~~~~~~ 376 (429)
++++|.++.+|.... ..++|+.|++++ |.+. .+|..+
T Consensus 759 ~Ls~N~L~~lp~~l~------------------------------------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 759 DVSYNCFSSFPTQPL------------------------------------NSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp ECCSSCCSSCCCGGG------------------------------------GCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred EeCCCCCCccchhhh------------------------------------cCCCCCEEECCCCCCcccccccccChHHH
Confidence 999999977653322 125789999976 6655 789899
Q ss_pred hccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200 377 WEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG 422 (429)
Q Consensus 377 ~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~ 422 (429)
..+++|+.|+|++|+++.+|..+. ++|+.|| |++|++..+..
T Consensus 803 ~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~Ld--Ls~N~l~~i~~ 844 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDIRKVDEKLT--PQLYILD--IADNPNISIDV 844 (876)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC--SSSCEEE--CCSCTTCEEEC
T ss_pred hcCCCCCEEECCCCCCCccCHhhc--CCCCEEE--CCCCCCCccCh
Confidence 999999999999999977998765 6999999 99999988653
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.3e-40 Score=335.99 Aligned_cols=385 Identities=26% Similarity=0.333 Sum_probs=307.0
Q ss_pred hHHHHHhhhcCeeeccCCCCc-cCChhhhhhhccc---------cCCCcccc-cCCccEEEcCCCCCC-ccchhccCCCC
Q 014200 2 DRILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEA---------GEGDKWWE-AVDLQKLILAHNNIE-KLKEDLRNLPL 69 (429)
Q Consensus 2 ~~~~~~~~~l~~L~l~~~~l~-~~~~~~~~~~~~~---------~~~~~~~~-~~~L~~L~l~~~~i~-~l~~~~~~~~~ 69 (429)
..++..+++|++|++++|.+. .+|...+..++.+ ..+..+.+ +++|++|++++|.++ .+|..|.++++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 356677888889999888876 4443323333332 12333434 489999999999988 67778999999
Q ss_pred CCEEECCCCCCC-Ccch-hhhCCCCCcEeecCCCcCc-cCCccccCCC-CcCEEecCCCCCC-cCCccccC--CCCCCEE
Q 014200 70 LTVLNVSHNKLS-ELPA-AIGELHMLKSLDVSFNSIM-KIPDEIGSAT-ALVKFDCSSNQLK-ELPSSLGR--CLNLSDF 142 (429)
Q Consensus 70 L~~L~l~~~~i~-~~~~-~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~-~L~~L~l~~~~l~-~~~~~~~~--~~~L~~L 142 (429)
|++|++++|.+. .+|. .+.++++|++|++++|.+. .+|..+..++ +|++|++++|.+. .++..+.. +++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 999999999987 7776 4899999999999999887 7788888877 8999999999887 45555544 7789999
Q ss_pred EcCCCccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-cCCccccCCccCCeEeccCCcCc
Q 014200 143 KASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL 220 (429)
Q Consensus 143 ~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~ 220 (429)
++++|.++ .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 99999888 77888999999999999999988666666889999999999999987 57888888999999999999988
Q ss_pred -cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccc-cchhhc-cccCEEEccCCCCCC-CCcccc
Q 014200 221 -SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY-CVEACQ-LRLSVLDLSNNSLSG-LPPEIG 295 (429)
Q Consensus 221 -~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~-~~L~~l~l~~n~l~~-l~~~l~ 295 (429)
.+|..+..+++|++|++++|.++ .+|.+++.+++|+.|++++|.+.+. +..... .+|+.|++++|.+++ +|..+.
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 56888999999999999999988 6788899999999999999998843 333332 349999999998874 555443
Q ss_pred C----------------------------------------------------------------------CCCCCEEEc
Q 014200 296 K----------------------------------------------------------------------MTTLRKLLL 305 (429)
Q Consensus 296 ~----------------------------------------------------------------------~~~L~~L~l 305 (429)
. +++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 3 345556666
Q ss_pred cCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcE
Q 014200 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITK 384 (429)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~ 384 (429)
++|.+++ ..|.. ....+.|+.|++++|.++ .+|..+..+++|++
T Consensus 640 s~N~l~g--------~ip~~---------------------------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 640 SYNMLSG--------YIPKE---------------------------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp CSSCCBS--------CCCGG---------------------------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCcccc--------cCCHH---------------------------HhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 6665542 11111 122357899999999998 88999999999999
Q ss_pred EeCCCCcccc-CChhhcccccceeeccccCCCcccc-cccc
Q 014200 385 LDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC-ISGC 423 (429)
Q Consensus 385 L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~-i~~~ 423 (429)
|||++|++++ +|+.++.+++|++|| +++|++++ ||..
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~--ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEID--LSNNNLSGPIPEM 723 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEE--CCSSEEEEECCSS
T ss_pred EECCCCcccCcCChHHhCCCCCCEEE--CcCCcccccCCCc
Confidence 9999999997 999999999999999 99999988 7653
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-39 Score=333.34 Aligned_cols=328 Identities=18% Similarity=0.255 Sum_probs=219.7
Q ss_pred cchhccCCCCCCEEECCCCCCCC------------------cchhhh--CCCCCcEeecCCCcCc-cCCccccCCCCcCE
Q 014200 60 LKEDLRNLPLLTVLNVSHNKLSE------------------LPAAIG--ELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (429)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~~i~~------------------~~~~l~--~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~ 118 (429)
+|..+.++++|+.|++++|.++. +|+.+. ++++|++|++++|.+. .+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55566666677777777666665 666544 6667777777666543 55666666667777
Q ss_pred EecCCCC-CCc--CCccccCC-------CCCCEEEcCCCccccCCc--cccccCCCcEEEccCCcccccChhhhhccccc
Q 014200 119 FDCSSNQ-LKE--LPSSLGRC-------LNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186 (429)
Q Consensus 119 L~l~~~~-l~~--~~~~~~~~-------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 186 (429)
|++++|+ ++. +|..+..+ ++|++|++++|.++.+|. .+..+++|+.|++++|.+..++ .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcc
Confidence 7776665 553 45433333 366777777766666666 6666666777777666666555 36666667
Q ss_pred ceeecCCccCCcCCccccCCcc-CCeEeccCCcCccCCccccccCC--CcEEEcCCCCCCccCh----hhc--CCCCCCE
Q 014200 187 TELIASKNLLNGMPETIGSLSR-LIRLDLHQNRILSIPSSISGCCS--LAEFYMGNNALSALPA----ELG--KLSKLGT 257 (429)
Q Consensus 187 ~~L~l~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--L~~L~l~~n~i~~~~~----~~~--~~~~L~~ 257 (429)
+.|++++|.+..+|..+..+++ |+.|++++|.+..+|..+...+. |+.|++++|.++..++ .+. .+++|+.
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 7777776666666666666666 67777777666666655554433 6667776666653322 122 2346667
Q ss_pred EECCCCcCccccchhh--ccccCEEEccCCCCCCCCccccC--------CCCCCEEEccCCCCCCccccccCCCcHHHHH
Q 014200 258 LDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPEIGK--------MTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (429)
Q Consensus 258 L~l~~n~l~~~~~~~~--~~~L~~l~l~~n~l~~l~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~ 327 (429)
|++++|.+..++...+ ..+|+.|++++|.++.+|..+.. +++|+.|++++|.++.++...+.
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~-------- 749 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-------- 749 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST--------
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh--------
Confidence 7777776666655543 23467777777666665554322 22666777777666655433321
Q ss_pred HHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCC------Ccccc-CChhhc
Q 014200 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR------NSIQE-LPPELS 400 (429)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~------n~i~~-~~~~l~ 400 (429)
...++|+.|++++|.++.+|..+..+++|+.|+|++ |++.+ +|..+.
T Consensus 750 --------------------------~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 750 --------------------------TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp --------------------------TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred --------------------------ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 123689999999999999999999999999999987 67776 999999
Q ss_pred ccccceeeccccCCCcccccccccc
Q 014200 401 SCASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 401 ~l~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
.+++|++|+ +++|+++.||+.+.
T Consensus 804 ~L~~L~~L~--Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 804 TCPSLIQLQ--IGSNDIRKVDEKLT 826 (876)
T ss_dssp GCSSCCEEE--CCSSCCCBCCSCCC
T ss_pred cCCCCCEEE--CCCCCCCccCHhhc
Confidence 999999999 99999988998754
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-39 Score=327.03 Aligned_cols=223 Identities=22% Similarity=0.177 Sum_probs=127.8
Q ss_pred ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC---CccccccCCC
Q 014200 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI---PSSISGCCSL 232 (429)
Q Consensus 156 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L 232 (429)
+..+++|+.|++++|.+..++. + .++.|+++++++|...... .+..+++|+.|++++|.+... +..+..+++|
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp~--~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFPT--L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCCC--C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccccccCCEEEcccccCccccc--C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 4445567777777777655552 3 5555666665555322111 233445555555555544432 3344444555
Q ss_pred cEEEcCCCCCCccChhhcCCCCCCEEECCCCcCcccc-------------------------chhh--ccccCEEEccCC
Q 014200 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC-------------------------VEAC--QLRLSVLDLSNN 285 (429)
Q Consensus 233 ~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------------~~~~--~~~L~~l~l~~n 285 (429)
++|++++|.++.+|..+..+++|+.|++++|.+.+.. +..+ ..+|++|++++|
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 5555555544444444444444555555544444332 2211 122455555555
Q ss_pred CCCC--CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccccc
Q 014200 286 SLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (429)
Q Consensus 286 ~l~~--l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 363 (429)
.+++ +|..+..+++|+.|++++|.+++++... +...++|++|+
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------------------------------~~~l~~L~~L~ 503 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-----------------------------------FDTLHRLQLLN 503 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-----------------------------------TTTCTTCCEEE
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhh-----------------------------------hcccccCCEEE
Confidence 4443 3444444455555555555444332222 12236888999
Q ss_pred ccCCccccC-ChhhhccCCCcEEeCCCCccccCChhhcccc-cceeeccccCCCcccc
Q 014200 364 LEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPPELSSCA-SLQVKFSDLVTNKESC 419 (429)
Q Consensus 364 l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~-~L~~L~~~l~~n~i~~ 419 (429)
+++|+++.+ |..+..+++|++|++++|+++.+|..+..++ +|++|+ +++|++.|
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~--l~~N~~~c 559 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN--LTNNSVAC 559 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE--CCSCCCCC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE--ccCCCccc
Confidence 999988855 7777888999999999999888888888887 599999 99999988
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-38 Score=319.78 Aligned_cols=291 Identities=22% Similarity=0.222 Sum_probs=143.2
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCCCc-chh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~~~-~~~ 86 (429)
+.+++||+++|.++.+++..|.. +++|++|++++|.+..+ |..|+++++|++|++++|.+..+ |..
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSR------------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTT------------CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcCcEEEccCCccCcCChhHhcc------------CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 35677777777777776655554 34455555555555433 23445555555555555554433 334
Q ss_pred hhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccC-CccccccCCC-
Q 014200 87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKM- 162 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L- 162 (429)
+.++++|++|++++|.+..+ +..+.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+ +..+..+++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 45555555555555544443 233444555555555555444331 1222244455555544444422 2223333333
Q ss_pred ----------------------------------------------------------------------------cEEE
Q 014200 163 ----------------------------------------------------------------------------SKLD 166 (429)
Q Consensus 163 ----------------------------------------------------------------------------~~L~ 166 (429)
+.++
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 3444
Q ss_pred ccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC-c
Q 014200 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS-A 244 (429)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~-~ 244 (429)
+++|.+..++...+..+++|+++++++|.++.+|..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+. .
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 44444444444445555566666666666665555555566666666666655543 334455555555555555444 3
Q ss_pred cCh-hhcCCCCCCEEECCCCcCcccc--c--hhhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCC
Q 014200 245 LPA-ELGKLSKLGTLDLHSNQLKEYC--V--EACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR 311 (429)
Q Consensus 245 ~~~-~~~~~~~L~~L~l~~n~l~~~~--~--~~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~ 311 (429)
++. .+..+++|++|++++|.+.+.. . .....+|++|++++|.++++ +..+..+++|+.|++++|.++
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 322 2445555555555555554432 1 11112355555555554442 334444555555555555443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-39 Score=322.76 Aligned_cols=403 Identities=19% Similarity=0.189 Sum_probs=255.0
Q ss_pred HHHHHhhhcCeeeccCCCCccCChhhhhhhccc------------cCCCcccccCCccEEEcCCCCCCcc-chhccCCCC
Q 014200 3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEA------------GEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPL 69 (429)
Q Consensus 3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~ 69 (429)
.+|.++++|++|++++|.+..+++..|..+..+ ..+..+.++++|++|++++|.++.+ +..+.++++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 345667777777777777777766666554444 2244566777788888887777766 345777777
Q ss_pred CCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcC--EEecCCCCCC------------------
Q 014200 70 LTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALV--KFDCSSNQLK------------------ 127 (429)
Q Consensus 70 L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~--~L~l~~~~l~------------------ 127 (429)
|++|++++|.+..++ ..+..+++|++|++++|.+..+ +..+..+++|+ .+++++|.+.
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 777777777777542 2344477777777777766654 33355555555 4555544443
Q ss_pred ---------------------------------------------------------cCCc-cccCCCCCCEEEcCCCcc
Q 014200 128 ---------------------------------------------------------ELPS-SLGRCLNLSDFKASNNCI 149 (429)
Q Consensus 128 ---------------------------------------------------------~~~~-~~~~~~~L~~L~l~~~~~ 149 (429)
.++. .+..+++|++|++++|.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 3322 255667777777777777
Q ss_pred ccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-cCCc-cccCCccCCeEeccCCcCccC---Cc
Q 014200 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPE-TIGSLSRLIRLDLHQNRILSI---PS 224 (429)
Q Consensus 150 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~~L~~L~l~~~~~~~~---~~ 224 (429)
+.+|..+..+++|++|++++|.+..+++..+..+++|+++++++|.+. .++. .+..+++|+.|++++|.+... +.
T Consensus 291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 777777777777777777777777666555777777777777777664 3433 366777777777777777644 45
Q ss_pred cccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccch---hhccccCEEEccCCCCCCC-CccccCCCC
Q 014200 225 SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSLSGL-PPEIGKMTT 299 (429)
Q Consensus 225 ~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~L~~l~l~~n~l~~l-~~~l~~~~~ 299 (429)
.+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+...... ....+|++|++++|.+++. +..+.++++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 667777777777777777654 55677777777777777777654322 1223477777777777663 556777777
Q ss_pred CCEEEccCCCCCCccc---cccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChh
Q 014200 300 LRKLLLTGNPLRTLRS---SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSE 375 (429)
Q Consensus 300 L~~L~l~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~ 375 (429)
|+.|++++|.+++... ..+.+. ..+....++... ........+...++|++|++++|+++ ..|..
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l---------~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTL---------GRLEILVLSFCD--LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGC---------TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred CCEEECCCCCCCccccccchhhccC---------CCccEEECCCCc--cCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 7777777777754210 001000 001111111110 01111112233467777777777777 34566
Q ss_pred hhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200 376 IWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 376 ~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+..++.| +|++++|++++ .|+.+..+++|++|+ +++|+++|
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~--l~~N~~~c 561 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN--LRQNPLDC 561 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE--CTTCCEEC
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEe--CCCCCccc
Confidence 6677777 77777777777 455567777788888 88888877
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=313.30 Aligned_cols=355 Identities=23% Similarity=0.242 Sum_probs=215.2
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCc-chhhhC
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~-~~~l~~ 89 (429)
+++|+++++++.+|..++ +++++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 467777777777776553 24666666666666554 3566666666666666666655 446666
Q ss_pred CCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCccccCCccccccCCC--cEE
Q 014200 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L 165 (429)
+++|++|++++|.++.+|.. .+++|++|++++|.+.. +|..+..+++|++|++++|.++. ..+..+++| +.|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 66666666666666666554 56666666666666664 34566666666666666666553 234444555 566
Q ss_pred EccCCcc--cccChhhhhc--------------------------c----------------------------------
Q 014200 166 DVEGNKL--TVLSNNLIAS--------------------------W---------------------------------- 183 (429)
Q Consensus 166 ~l~~~~~--~~~~~~~~~~--------------------------~---------------------------------- 183 (429)
++++|.+ ....+..+.. +
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 6555544 1111111111 1
Q ss_pred -----------------------cccceeecCCccCC-cCCccc-----cCCccCCeEeccCCcCccCC-cc--------
Q 014200 184 -----------------------TMLTELIASKNLLN-GMPETI-----GSLSRLIRLDLHQNRILSIP-SS-------- 225 (429)
Q Consensus 184 -----------------------~~L~~L~l~~~~l~-~~~~~~-----~~~~~L~~L~l~~~~~~~~~-~~-------- 225 (429)
++|+++++++|.+. .+|..+ ..++.|+.+++++|.+ .+| ..
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTC
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccC
Confidence 24555555555554 455544 4555555555555444 222 11
Q ss_pred -----------------ccccCCCcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccccc----hhhccccCEEEcc
Q 014200 226 -----------------ISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCV----EACQLRLSVLDLS 283 (429)
Q Consensus 226 -----------------~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~l~l~ 283 (429)
...+++|++|++++|.++. +|..+..+++|+.|++++|.+++++. .....+|++|+++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 1344555555555555553 34455555555555555555554322 1112235555555
Q ss_pred CCCCCC-CCcc-ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccc
Q 014200 284 NNSLSG-LPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361 (429)
Q Consensus 284 ~n~l~~-l~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 361 (429)
+|.+++ +|.. +..+++|+.|++++|.+++.. ....+++|+.
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------------------------~~~l~~~L~~ 425 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-------------------------------------FRCLPPRIKV 425 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-------------------------------------GGSCCTTCCE
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcch-------------------------------------hhhhcccCCE
Confidence 555555 4432 445555555555555543210 0111258999
Q ss_pred ccccCCccccCChhhhccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccccccccccc
Q 014200 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW 427 (429)
Q Consensus 362 l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~~~~~~~ 427 (429)
|++++|+++.+|..++.+++|++|++++|+++++|.. +..+++|++|+ +++|+++| +|-+.|
T Consensus 426 L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~--l~~N~~~c--~c~~~~ 488 (520)
T 2z7x_B 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC--SCPRID 488 (520)
T ss_dssp EECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCBCC--CHHHHH
T ss_pred EECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE--CcCCCCcc--cCCchH
Confidence 9999999999999999999999999999999998886 88999999999 99999999 555554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-38 Score=317.57 Aligned_cols=389 Identities=18% Similarity=0.154 Sum_probs=236.9
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCc-chhh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI 87 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~-~~~l 87 (429)
++++|++++|.++.+++..|. ++++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~------------~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFS------------NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTT------------TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CcCEEECCCCCcCEeChhhcc------------CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 344444444444444443333 4566777777777666553 3566677777777777766655 4566
Q ss_pred hCCCCCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCC--cCCccccCCCCCCEEEcCCCccccC-Ccccccc----
Q 014200 88 GELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL-PEDLADC---- 159 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~---- 159 (429)
.++++|++|++++|.+..++ ..++++++|++|++++|.+. .+|..+..+++|++|++++|.++.+ +..+..+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 67777777777777666554 44666677777777776665 3566666667777777666665532 2222222
Q ss_pred -----------------------CCCcEEEccCCcccc------------------------------------------
Q 014200 160 -----------------------SKMSKLDVEGNKLTV------------------------------------------ 174 (429)
Q Consensus 160 -----------------------~~L~~L~l~~~~~~~------------------------------------------ 174 (429)
.+|+.+++++|.+..
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 234444444442210
Q ss_pred ----------------cChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCc--------------
Q 014200 175 ----------------LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-------------- 224 (429)
Q Consensus 175 ----------------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------- 224 (429)
..+. +..+++|+.++++++.+..+| .+..+++|+.|++++|.+..+|.
T Consensus 261 l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n 338 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN 338 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESC
T ss_pred ccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCC
Confidence 0000 223344555555555555555 45555555555555555544442
Q ss_pred ------cccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCCCCC--c
Q 014200 225 ------SISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLP--P 292 (429)
Q Consensus 225 ------~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~~l~--~ 292 (429)
.+..+++|++|++++|.++.. +..+..+++|++|++++|.+..++..... .+|++|++++|.+++.+ .
T Consensus 339 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChh
Confidence 334556666666666666643 56667777777777777777665533222 34778888877777753 3
Q ss_pred cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh-HHhhhhccccccccccccCCcccc
Q 014200 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED-LITMATRLSVTSKELSLEGMNLSA 371 (429)
Q Consensus 293 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~i~~ 371 (429)
.+.++++|+.|++++|.++......+.+.. .+....++.. ...+ .....+...++|+.|++++|.++.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLT---------SLNTLKMAGN--SFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCC---------CCCEEECCCC--cCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 577777888888888877654433222210 0111111111 1111 112223455789999999999985
Q ss_pred C-ChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccc
Q 014200 372 I-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 372 ~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
+ |..+..+++|++|++++|++++ .|..+..+++|++|+ +++|+++.+|+.+.
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--l~~N~l~~~p~~~~ 541 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD--CSFNRIETSKGILQ 541 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE--CTTSCCCCEESCGG
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE--CCCCcCcccCHhHh
Confidence 4 6678899999999999999998 688999999999999 99999999998743
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-37 Score=301.02 Aligned_cols=352 Identities=23% Similarity=0.342 Sum_probs=302.5
Q ss_pred HHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch
Q 014200 6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (429)
Q Consensus 6 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 85 (429)
..++.++.|+++++.+.++|. +. .+++|++|++++|.++.++. +.++++|++|++++|.+..++.
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~--~~------------~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG--VE------------YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hHhccccEEecCCCCCccCcc--hh------------hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh
Confidence 346789999999999988874 33 26889999999999998886 8999999999999999998876
Q ss_pred hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEE
Q 014200 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L 165 (429)
+.++++|++|++++|.+..++. +.++++|++|++++|.+..++ .+..+++|++|++. +.+..++ .+..+++|+.|
T Consensus 108 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L 182 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERL 182 (466)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEE
T ss_pred -hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCch-hhccCCCCCEE
Confidence 9999999999999999998865 889999999999999988875 48889999999996 4444443 37889999999
Q ss_pred EccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc
Q 014200 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (429)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 245 (429)
++++|.+..++. +..+++|++|++++|.+...+. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+
T Consensus 183 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 183 DISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred ECcCCcCCCChh--hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccc
Confidence 999999887653 7888999999999999987754 677899999999999988774 578899999999999999987
Q ss_pred ChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHH
Q 014200 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325 (429)
Q Consensus 246 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~ 325 (429)
++ +..+++|+.|++++|.+.+++......+|++|++++|.+++++. +..+++|+.|++++|.+++++.
T Consensus 259 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---------- 326 (466)
T 1o6v_A 259 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---------- 326 (466)
T ss_dssp GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG----------
T ss_pred hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh----------
Confidence 65 88999999999999999988775555669999999999999866 8899999999999999865432
Q ss_pred HHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccc
Q 014200 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405 (429)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L 405 (429)
....++|+.|++++|.++.++ .+..+++|+.|++++|++++.+. +..+++|
T Consensus 327 ---------------------------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 377 (466)
T 1o6v_A 327 ---------------------------VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRI 377 (466)
T ss_dssp ---------------------------GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred ---------------------------hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCC
Confidence 112368899999999999874 67889999999999999999554 8899999
Q ss_pred eeeccccCCCccccccccc
Q 014200 406 QVKFSDLVTNKESCISGCY 424 (429)
Q Consensus 406 ~~L~~~l~~n~i~~i~~~~ 424 (429)
++|+ +++|+++++|.++
T Consensus 378 ~~L~--l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 378 TQLG--LNDQAWTNAPVNY 394 (466)
T ss_dssp CEEE--CCCEEEECCCBCC
T ss_pred CEEe--ccCCcccCCchhh
Confidence 9999 9999999987665
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.6e-38 Score=314.12 Aligned_cols=378 Identities=19% Similarity=0.225 Sum_probs=272.5
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcch-h
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~~-~ 86 (429)
+.+++|++++|+++.+++..|. ++++|++|++++|.++.++ ..|.++++|++|++++|.+..++. .
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR------------ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS------------SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCccEEECcCCccCccChhhhh------------cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 4566777777776666554444 4778999999999888776 468889999999999998887765 5
Q ss_pred hhCCCCCcEeecCCCcCcc--CCccccCCCCcCEEecCCCC-CCcCC-ccccCCCCCCEEEcCCCcccc-CCccccccCC
Q 014200 87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~-l~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~ 161 (429)
+.++++|++|++++|.+.. +|..++++++|++|++++|. +..++ ..+..+++|++|++++|.++. .|..+..+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 8889999999999988874 45678888999999998887 55665 467888889999998888874 5666777777
Q ss_pred CcEEEccCCcccccChhhhhcccccceeecCCccCCcCC---cc-cc---------------------------------
Q 014200 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP---ET-IG--------------------------------- 204 (429)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~~-~~--------------------------------- 204 (429)
|+.|++++|.+..++...+..+++|+++++++|.++..+ .. ..
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 777777776665555544455666777766666654421 00 00
Q ss_pred ------------------------------------------------------CCccCCeEeccCCcCccCCccc-ccc
Q 014200 205 ------------------------------------------------------SLSRLIRLDLHQNRILSIPSSI-SGC 229 (429)
Q Consensus 205 ------------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~-~~~ 229 (429)
..++++.+++++|.+..+|..+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 0134555556666655565544 467
Q ss_pred CCCcEEEcCCCCCCcc-Ch---hhcCCCCCCEEECCCCcCccccc----hhhccccCEEEccCCCCCCCCccccCCCCCC
Q 014200 230 CSLAEFYMGNNALSAL-PA---ELGKLSKLGTLDLHSNQLKEYCV----EACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301 (429)
Q Consensus 230 ~~L~~L~l~~n~i~~~-~~---~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~ 301 (429)
++|++|++++|.++.. |. .++.+++|+.|++++|.+++++. .....+|++|++++|+++.+|..+..+++|+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence 8888888888888743 32 35678888888888888877653 2233458899999998888888888888899
Q ss_pred EEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCC
Q 014200 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE 381 (429)
Q Consensus 302 ~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~ 381 (429)
.|++++|.++.++...+. .+....++...... .....++|++|++++|+++.+|. ...+++
T Consensus 414 ~L~Ls~N~l~~l~~~~~~------------~L~~L~Ls~N~l~~------~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~ 474 (549)
T 2z81_A 414 FLNLSSTGIRVVKTCIPQ------------TLEVLDVSNNNLDS------FSLFLPRLQELYISRNKLKTLPD-ASLFPV 474 (549)
T ss_dssp EEECTTSCCSCCCTTSCT------------TCSEEECCSSCCSC------CCCCCTTCCEEECCSSCCSSCCC-GGGCTT
T ss_pred EEECCCCCcccccchhcC------------CceEEECCCCChhh------hcccCChhcEEECCCCccCcCCC-cccCcc
Confidence 999999888776644321 01111111111100 11345789999999999999997 467999
Q ss_pred CcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200 382 ITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 382 L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
|++|++++|++++ .|..+..+++|++|+ +++|+++|
T Consensus 475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--l~~N~~~~ 511 (549)
T 2z81_A 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC 511 (549)
T ss_dssp CCEEECCSSCCCCCCTTGGGGCTTCCEEE--CCSSCBCC
T ss_pred CCEEecCCCccCCcCHHHHhcCcccCEEE--ecCCCccC
Confidence 9999999999999 556689999999999 99999998
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=316.04 Aligned_cols=386 Identities=20% Similarity=0.221 Sum_probs=257.6
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcc-hh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AA 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~-~~ 86 (429)
+.++.|++++|+++.+++..|.. +++|++|++++|.++.++. .|+++++|++|++++|.++.++ .+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 46788888888888887766654 6678888888887776653 5777888888888888777664 47
Q ss_pred hhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCccccC-CccccccCCC
Q 014200 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKM 162 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L 162 (429)
|.++++|++|++++|.+..++. .++++++|++|++++|.+.. +|..+..+++|++|++++|.++.+ +..+..+.+|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 7778888888888887776655 47777888888888877774 567777778888888887777644 2345555555
Q ss_pred ----cEEEccCCcccccChh------------------------------------------------------------
Q 014200 163 ----SKLDVEGNKLTVLSNN------------------------------------------------------------ 178 (429)
Q Consensus 163 ----~~L~l~~~~~~~~~~~------------------------------------------------------------ 178 (429)
+.+++++|.+..+++.
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 5566655544433221
Q ss_pred ---------------------hhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcc------------
Q 014200 179 ---------------------LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS------------ 225 (429)
Q Consensus 179 ---------------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 225 (429)
.+..+++|++++++++.++.+|..+..+ +|+.|++++|.+..+|..
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~ 334 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcC
Confidence 2334456666666666666666666555 666666666665544431
Q ss_pred --------ccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccchhh-ccccCEEEccCCCCCCCC--
Q 014200 226 --------ISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEAC-QLRLSVLDLSNNSLSGLP-- 291 (429)
Q Consensus 226 --------~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~L~~l~l~~n~l~~l~-- 291 (429)
...+++|++|++++|.++.. +..+..+++|+.|++++|.+..++.... ..+|++|++++|.+++.+
T Consensus 335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS
T ss_pred CccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch
Confidence 04566677777777776644 4566777777777777777766554322 234777888777777643
Q ss_pred ccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCcccc
Q 014200 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (429)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~ 371 (429)
..+.++++|+.|++++|.+.......+.+.. .+....++..... .......+..+++|+.|++++|+++.
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n~l~-~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------SLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCC---------cCcEEECcCCcCc-cccchhhhhcccCCCEEECCCCcccc
Confidence 3567777888888888777655433332211 1111111111100 00111223445789999999999995
Q ss_pred C-ChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200 372 I-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 372 ~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+ |..+..+++|++|++++|++++ .|..+..+++|++|+ +++|+++|
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~N~~~~ 532 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC 532 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--CCSSCBCC
T ss_pred CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE--ecCCcccC
Confidence 5 7788889999999999999998 455688899999999 99999998
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-37 Score=306.19 Aligned_cols=359 Identities=22% Similarity=0.248 Sum_probs=252.1
Q ss_pred hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-ch
Q 014200 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PA 85 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~ 85 (429)
+...+++|+++++++.+|..++ +++++|++++|.++.++. .|.++++|++|++++|.++.+ |.
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 94 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH
Confidence 4455789999999999998664 358888888888887764 688888888888888888866 55
Q ss_pred hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC--ccccCCCCCCEEEcCCCccccCCccccccCCC-
Q 014200 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM- 162 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L- 162 (429)
+|.++++|++|++++|.++.+|.. .+++|++|++++|++..++ ..+..+++|++|++++|.++.. .+..+++|
T Consensus 95 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~ 170 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLH 170 (562)
T ss_dssp TTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSC
T ss_pred HhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhce
Confidence 788888888888888888888776 7888888888888888654 6788888888888888877642 34445555
Q ss_pred -cEEEccCCcc--cccChhhhh--------------------------ccc-----------------------------
Q 014200 163 -SKLDVEGNKL--TVLSNNLIA--------------------------SWT----------------------------- 184 (429)
Q Consensus 163 -~~L~l~~~~~--~~~~~~~~~--------------------------~~~----------------------------- 184 (429)
+.+++++|.+ ....+..+. .++
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 7777777765 222111111 122
Q ss_pred --------------------------ccceeecCCccCC-cCCccc-----cCCc-------------------------
Q 014200 185 --------------------------MLTELIASKNLLN-GMPETI-----GSLS------------------------- 207 (429)
Q Consensus 185 --------------------------~L~~L~l~~~~l~-~~~~~~-----~~~~------------------------- 207 (429)
+|+++++++|.+. .+|..+ ..++
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 4555555555554 344333 2222
Q ss_pred -cCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccccch----hhccccCEEE
Q 014200 208 -RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLD 281 (429)
Q Consensus 208 -~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~l~ 281 (429)
+++.|++++|.+...+ ....+++|++|++++|.++. .|..+..+++|+.|++++|.+++++.. ....+|++|+
T Consensus 331 ~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred CcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 2344444444433221 11556777777777777775 466677777777777777777765431 1223477777
Q ss_pred ccCCCCCC-CCc-cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccc
Q 014200 282 LSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359 (429)
Q Consensus 282 l~~n~l~~-l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 359 (429)
+++|.+++ +|. .+..+++|+.|++++|.+++... ...+++|
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------~~l~~~L 452 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-------------------------------------RCLPPKV 452 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-------------------------------------SSCCTTC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh-------------------------------------hhhcCcC
Confidence 77777776 554 36667777777777777642110 0111488
Q ss_pred ccccccCCccccCChhhhccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccccccccccc
Q 014200 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW 427 (429)
Q Consensus 360 ~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~~~~~~~ 427 (429)
+.|++++|+++.+|..++.+++|++|++++|+++++|.. +..+++|++|+ +++|+++| +|-+.|
T Consensus 453 ~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~--l~~N~~~c--~c~~~~ 517 (562)
T 3a79_B 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW--LHDNPWDC--TCPGIR 517 (562)
T ss_dssp SEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE--CCSCCBCC--CHHHHH
T ss_pred CEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE--ecCCCcCC--CcchHH
Confidence 999999999999999999999999999999999998887 89999999999 99999999 554444
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-37 Score=304.28 Aligned_cols=386 Identities=20% Similarity=0.234 Sum_probs=281.9
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcc-hhhh
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AAIG 88 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~ 88 (429)
.+.+++++.+++++|..+. +++++|++++|.++.++. .|.++++|++|++++|.++.++ .+|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 4568999999999998663 359999999999998765 6999999999999999999775 4799
Q ss_pred CCCCCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCcccc--CCccccccCCCcE
Q 014200 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~l~~~~~L~~ 164 (429)
++++|++|++++|.+..++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998775 568999999999999999998865 68899999999999999985 6889999999999
Q ss_pred EEccCCcccccChhhhhccccc----ceeecCCccCCcCC----------------------------------------
Q 014200 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMP---------------------------------------- 200 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~l~~~~---------------------------------------- 200 (429)
|++++|.+..++...+..+++| ..+++++|.++.++
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999998877767777777 67777777654332
Q ss_pred ------------------------------------------ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcC
Q 014200 201 ------------------------------------------ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238 (429)
Q Consensus 201 ------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 238 (429)
..+..+++|+.+++++|.+..+|..+..+ +|++|+++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence 22333466677777777766666666666 77777777
Q ss_pred CCCCCccChhh--------------------cCCCCCCEEECCCCcCcccc---ch-hhccccCEEEccCCCCCCCCccc
Q 014200 239 NNALSALPAEL--------------------GKLSKLGTLDLHSNQLKEYC---VE-ACQLRLSVLDLSNNSLSGLPPEI 294 (429)
Q Consensus 239 ~n~i~~~~~~~--------------------~~~~~L~~L~l~~n~l~~~~---~~-~~~~~L~~l~l~~n~l~~l~~~l 294 (429)
+|.++.+|... ..+++|+.|++++|.++... .. ....+|++|++++|.+++++..+
T Consensus 313 ~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 392 (570)
T 2z63_A 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392 (570)
T ss_dssp SCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred cCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence 77666554320 23455566666666555432 11 11233666666666666655556
Q ss_pred cCCCCCCEEEccCCCCCCccc-cccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc--c
Q 014200 295 GKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--A 371 (429)
Q Consensus 295 ~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~--~ 371 (429)
..+++|+.|++++|.+...+. ..+.+. ..+....++.. .........+...++|+.|++++|.++ .
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l---------~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSL---------RNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTC---------TTCCEEECTTS--CCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cccCCCCEEEccCCccccccchhhhhcC---------CCCCEEeCcCC--cccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 666666666666666654422 111110 00111111111 111111122344678999999999987 5
Q ss_pred CChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccc
Q 014200 372 IPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 372 ~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
+|..+..+++|++|++++|++++ .|..+..+++|++|+ +++|+++++|+..+
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN--MASNQLKSVPDGIF 514 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCSCCCTTTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe--CCCCcCCCCCHHHh
Confidence 88888899999999999999998 588899999999999 99999999876543
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-35 Score=302.32 Aligned_cols=401 Identities=22% Similarity=0.217 Sum_probs=229.9
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccc------------cCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEEC
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEA------------GEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNV 75 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l 75 (429)
+++++|++++|.++.+++..|..+..+ ..++.+.++++|++|++++|.++.++. .|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 345555666555555555544442221 112223345666777776666666665 3666667777777
Q ss_pred CCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCcc---ccCCCCCCEEEcCCCccc
Q 014200 76 SHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSS---LGRCLNLSDFKASNNCIT 150 (429)
Q Consensus 76 ~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~L~~L~l~~~~~~ 150 (429)
++|.+..++ ..|.++++|++|++++|.+..+ +..+.++++|++|++++|.+..++.. ...+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 766666554 3566666777777766666544 33455666666666666666654332 223456666666666555
Q ss_pred cCC-cccccc---------------------------CCCcEEEccCCcccccChhhhhcccc--cceeecCCccCCcC-
Q 014200 151 SLP-EDLADC---------------------------SKMSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLNGM- 199 (429)
Q Consensus 151 ~~~-~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~~~- 199 (429)
.++ ..+..+ ++|+.|++++|.+....+..+..++. |++|++++|.++.+
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 322 112111 33444444444444433333444433 56666666555443
Q ss_pred CccccCCccCCeEeccCCcCccC-Cc---------------------------------cccccCCCcEEEcCCCCCCcc
Q 014200 200 PETIGSLSRLIRLDLHQNRILSI-PS---------------------------------SISGCCSLAEFYMGNNALSAL 245 (429)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~-~~---------------------------------~~~~~~~L~~L~l~~n~i~~~ 245 (429)
+..+..+++|+.|++++|.+..+ +. .+..+++|++|++++|.++.+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 23455555666666665555432 22 344455556666666655544
Q ss_pred -ChhhcCCCCCCEEECCCCcCc--cccchhh----ccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCC-cccc
Q 014200 246 -PAELGKLSKLGTLDLHSNQLK--EYCVEAC----QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT-LRSS 316 (429)
Q Consensus 246 -~~~~~~~~~L~~L~l~~n~l~--~~~~~~~----~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~-~~~~ 316 (429)
+..+..+++|+.|++++|.+. .++...+ ..+|+.+++++|+++++ +..+..+++|+.|++++|.+.. ++..
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 334566666666666666432 2222111 13477777777777774 5567888888888888888763 3333
Q ss_pred ccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc---cCChhhhccCCCcEEeCCCCccc
Q 014200 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQ 393 (429)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~---~~~~~~~~~~~L~~L~ls~n~i~ 393 (429)
.+.+.. .+....++.. .........+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 425 ~~~~l~---------~L~~L~Ls~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 425 EWRGLE---------NIFEIYLSYN--KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp GGTTCT---------TCCEEECCSC--SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred cccCcc---------cccEEecCCC--CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 332211 0111111111 111111122334578889999988875 56788889999999999999999
Q ss_pred cCC-hhhcccccceeeccccCCCccccccc
Q 014200 394 ELP-PELSSCASLQVKFSDLVTNKESCISG 422 (429)
Q Consensus 394 ~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~ 422 (429)
++| ..+..+++|++|+ +++|+++.++.
T Consensus 494 ~i~~~~~~~l~~L~~L~--Ls~N~l~~~~~ 521 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILD--LQHNNLARLWK 521 (680)
T ss_dssp CCCTTTTTTCTTCCEEE--CCSSCCGGGGS
T ss_pred cCChhhhccccccCEEe--CCCCCccccch
Confidence 854 5688999999999 99999998654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-36 Score=300.98 Aligned_cols=382 Identities=20% Similarity=0.229 Sum_probs=297.6
Q ss_pred hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcc-h
Q 014200 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-A 85 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~-~ 85 (429)
|+.....|+++++++++|..++ +++++|++++|.++.++ ..|.++++|++|++++|.++.++ .
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred CCCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3445567889999999998764 35999999999999774 57999999999999999999775 5
Q ss_pred hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCc-cccCC-ccccccC
Q 014200 86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCS 160 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~l~~~~ 160 (429)
+|.++++|++|++++|.+..++.. ++++++|++|++++|.+.. .+..+..+++|++|++++|. +..++ ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 899999999999999999988765 8999999999999999984 46778999999999999997 55665 5788999
Q ss_pred CCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc-cCCccCCeEeccCCcCccCC---cc-c---------
Q 014200 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP---SS-I--------- 226 (429)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~---~~-~--------- 226 (429)
+|++|++++|.+....+..+..+++|++++++.+....++..+ ..+++|+.|++++|.+...+ .. .
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999998877777889999999999999887766543 56889999999998876531 00 0
Q ss_pred ------------------------------------------------------------------------------cc
Q 014200 227 ------------------------------------------------------------------------------SG 228 (429)
Q Consensus 227 ------------------------------------------------------------------------------~~ 228 (429)
..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 11
Q ss_pred cCCCcEEEcCCCCCCccChhh-cCCCCCCEEECCCCcCccccc-----hhhccccCEEEccCCCCCCCC---ccccCCCC
Q 014200 229 CCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCV-----EACQLRLSVLDLSNNSLSGLP---PEIGKMTT 299 (429)
Q Consensus 229 ~~~L~~L~l~~n~i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~-----~~~~~~L~~l~l~~n~l~~l~---~~l~~~~~ 299 (429)
.++++.+++++|.++.+|..+ +.+++|+.|++++|.+.+..+ .....+|++|++++|++++++ ..+..+++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 235666777777777777665 578999999999999886422 122345999999999998865 35888999
Q ss_pred CCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhcc
Q 014200 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA 379 (429)
Q Consensus 300 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~ 379 (429)
|+.|++++|.++.++........ +....++...... .....+++|+.|++++|+++.++ ..+
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~----------L~~L~Ls~N~l~~-----l~~~~~~~L~~L~Ls~N~l~~~~---~~l 450 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEK----------MRFLNLSSTGIRV-----VKTCIPQTLEVLDVSNNNLDSFS---LFL 450 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTT----------CCEEECTTSCCSC-----CCTTSCTTCSEEECCSSCCSCCC---CCC
T ss_pred CCEEECCCCCCccCChhhccccc----------ccEEECCCCCccc-----ccchhcCCceEEECCCCChhhhc---ccC
Confidence 99999999999887754321110 1111111111000 00112358899999999988765 478
Q ss_pred CCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccccccc
Q 014200 380 GEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
++|++|++++|+++.+|. ...+++|++|+ +++|+++++|+..+
T Consensus 451 ~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~--Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 451 PRLQELYISRNKLKTLPD-ASLFPVLLVMK--ISRNQLKSVPDGIF 493 (549)
T ss_dssp TTCCEEECCSSCCSSCCC-GGGCTTCCEEE--CCSSCCCCCCTTGG
T ss_pred ChhcEEECCCCccCcCCC-cccCccCCEEe--cCCCccCCcCHHHH
Confidence 999999999999999987 57899999999 99999999877643
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.4e-36 Score=288.86 Aligned_cols=355 Identities=19% Similarity=0.234 Sum_probs=291.1
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCC-Cc-chhhh
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAAIG 88 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~-~~-~~~l~ 88 (429)
+.+++++++++.+|. . .+++++|++++|.++.+ +..|.++++|++|++++|.+. .+ +..|.
T Consensus 13 ~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~ 76 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76 (455)
T ss_dssp TEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred cccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence 468999999999987 3 24699999999999977 557999999999999999986 55 45899
Q ss_pred CCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCc-CCcc--ccCCCCCCEEEcCCCccccC-Ccc-ccccCCC
Q 014200 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSL-PED-LADCSKM 162 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~-~~~~--~~~~~~L~~L~l~~~~~~~~-~~~-l~~~~~L 162 (429)
++++|++|++++|.+..+ |..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+ |.. +..+++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999999999866 6779999999999999999884 3333 88899999999999999966 444 7899999
Q ss_pred cEEEccCCcccccChhhhhcc--cccceeecCCccCCcCCcc---------ccCCccCCeEeccCCcCcc-CCccccc--
Q 014200 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPET---------IGSLSRLIRLDLHQNRILS-IPSSISG-- 228 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~---------~~~~~~L~~L~l~~~~~~~-~~~~~~~-- 228 (429)
++|++++|.+....+..+..+ ..++.++++++.+..++.. +..+++|+.|++++|.+.. .+..+..
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 999999999988776666665 6899999999998776532 3356789999999999873 3444433
Q ss_pred -cCCCcEEEcCCCCCCcc-----------Chhhc--CCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCC-C
Q 014200 229 -CCSLAEFYMGNNALSAL-----------PAELG--KLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-P 291 (429)
Q Consensus 229 -~~~L~~L~l~~n~i~~~-----------~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l-~ 291 (429)
.++++.+++++|..... +..+. ..++|+.+++++|.+.++.+..+. .+|++|++++|.++++ +
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 38899999998854421 11122 346899999999999877554433 4599999999999985 5
Q ss_pred ccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCcccc
Q 014200 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (429)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~ 371 (429)
..+.++++|+.|++++|.+++++...+.+ .++|+.|++++|.++.
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFEN-----------------------------------LDKLEVLDLSYNHIRA 361 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTT-----------------------------------CTTCCEEECCSSCCCE
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcC-----------------------------------cccCCEEECCCCcccc
Confidence 67999999999999999997765443332 3589999999999996
Q ss_pred C-ChhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCcccc
Q 014200 372 I-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 372 ~-~~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+ |..+..+++|++|++++|+++++|. .+..+++|++|+ +++|+++|
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--l~~N~l~~ 409 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC 409 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--CCSSCBCC
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEE--ccCCCccc
Confidence 5 7788899999999999999999665 568999999999 99999999
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=311.87 Aligned_cols=402 Identities=22% Similarity=0.217 Sum_probs=195.2
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccc-------------cCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEE
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEA-------------GEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLN 74 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~ 74 (429)
+++++||+++|.++.+++..|..+..+ ..++.+.++++|++|++++|.+..+ |..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 567777777777776665555543332 1133455566666666666666644 44566666666666
Q ss_pred CCCCCCCC-cch--hhhCCCCCcEeecCCCcCccC--CccccCCCCcCEEecCCCCCCcC-CccccCC--CCCCEEEcCC
Q 014200 75 VSHNKLSE-LPA--AIGELHMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLKEL-PSSLGRC--LNLSDFKASN 146 (429)
Q Consensus 75 l~~~~i~~-~~~--~l~~l~~L~~L~l~~~~i~~l--~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~--~~L~~L~l~~ 146 (429)
+++|.+.. ++. .+.++++|++|++++|.+..+ +..++++++|++|++++|.+..+ +..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 66666553 233 256666666666666655543 23456666666666666555422 1222211 2222222222
Q ss_pred Ccccc-CCcccccc------------------------------------------------------------------
Q 014200 147 NCITS-LPEDLADC------------------------------------------------------------------ 159 (429)
Q Consensus 147 ~~~~~-~~~~l~~~------------------------------------------------------------------ 159 (429)
|.+.. .+..+..+
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 22220 11111111
Q ss_pred --CCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEE
Q 014200 160 --SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEF 235 (429)
Q Consensus 160 --~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 235 (429)
++++.|++++|.+..+.+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 2344444444444433333344444455555555544433 23344445555555555554433 3344455555555
Q ss_pred EcCCCCCCccC-hhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCcc---------------------
Q 014200 236 YMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE--------------------- 293 (429)
Q Consensus 236 ~l~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~--------------------- 293 (429)
++++|.++.++ ..+..+++|+.|++++|.++.++. .++|+.+++++|+++.+|..
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 55555544442 234445555555555554443322 12233333333333332211
Q ss_pred -ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCCh---hhHHhhhhccccccccccccCCcc
Q 014200 294 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK---EDLITMATRLSVTSKELSLEGMNL 369 (429)
Q Consensus 294 -l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~l~l~~~~i 369 (429)
+.++++|+.|++++|.++.++........ ..+....++...... .......+...++|+.|++++|++
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSEN--------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSC--------TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred hhhcCCccceeeCCCCcccccccccccccC--------CccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 23455666666666665544322111100 001111111110000 000011233346778888888888
Q ss_pred ccCChh-hhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccc
Q 014200 370 SAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCY 424 (429)
Q Consensus 370 ~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~ 424 (429)
+.++.. +..+++|+.|+|++|+++++|..... ++|+.|+ +++|+++++++..
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~--Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILD--ISRNQLLAPNPDV 545 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEE--EEEECCCCCCSCC
T ss_pred cccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEE--CCCCcCCCCChhH
Confidence 765544 45778888888888888775544333 7788888 8888888755443
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-35 Score=299.35 Aligned_cols=289 Identities=20% Similarity=0.311 Sum_probs=173.2
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhh
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~ 88 (429)
-+.+|+++++++.+|..+.. ++++|++++|.++.++. .|.++++|++|++++|.+..+ |.++.
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~---------------~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPT---------------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCT---------------TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred CCeeECCCCCccccccccCC---------------CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence 36799999999999986643 46777777777776654 467777777777777776655 44667
Q ss_pred CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccC-CccccccCCCcEE
Q 014200 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL 165 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L 165 (429)
++++|++|++++|.+..+|+ .+.++++|++|++++|++..++ ..+..+++|++|++++|.+... +..+..+++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 77777777777777766665 3666777777777777766654 4566677777777777766643 3445666777777
Q ss_pred EccCCcccccChhhhh--cccccceeecCCccCCcCC-ccccCC---------------------------ccCCeEecc
Q 014200 166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGSL---------------------------SRLIRLDLH 215 (429)
Q Consensus 166 ~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~-~~~~~~---------------------------~~L~~L~l~ 215 (429)
++++|.+..++...+. .+++|++|++++|.++.++ ..+..+ ++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 7777766665554333 3356777777766665432 222221 345555565
Q ss_pred CCcCccC-CccccccCC--CcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh--ccccCEEEccCCCCC-
Q 014200 216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLS- 288 (429)
Q Consensus 216 ~~~~~~~-~~~~~~~~~--L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~l~l~~n~l~- 288 (429)
+|.+... +..+..++. |++|++++|.++.+ +..+..+++|++|++++|.+.++.+..+ ..+|+++++++|...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 5555533 344544433 66666666666644 3456666666666666666655433221 123555555544222
Q ss_pred -----CCCc----cccCCCCCCEEEccCCCCCCcc
Q 014200 289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLR 314 (429)
Q Consensus 289 -----~l~~----~l~~~~~L~~L~l~~~~i~~~~ 314 (429)
.+|. .+..+++|+.|++++|.+++++
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 1221 3444555555555555554443
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.7e-35 Score=271.58 Aligned_cols=304 Identities=20% Similarity=0.281 Sum_probs=182.9
Q ss_pred ccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecC
Q 014200 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (429)
Q Consensus 43 ~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~ 122 (429)
.++++++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+.++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 3556667777666666665 35666667777776666666654 666666777776666666553 35666666666666
Q ss_pred CCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (429)
Q Consensus 123 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 202 (429)
+|.+..++. +..+++|++|++++|........+..+++|+.|++++|.+...+. +..+++|+++++++|
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n-------- 187 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-------- 187 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS--------
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC--------
Confidence 666665544 556666666666666443333335555666666666555544433 344444444444444
Q ss_pred ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEc
Q 014200 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (429)
Q Consensus 203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l 282 (429)
.+..++. +..+++|+.+++++|.++.++. +..+++|++|++++|.++.++......+|++|++
T Consensus 188 ---------------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 250 (347)
T 4fmz_A 188 ---------------QIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250 (347)
T ss_dssp ---------------CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred ---------------ccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence 4444332 4445555555555555554433 4455555555555555555444333334556666
Q ss_pred cCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccc
Q 014200 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (429)
Q Consensus 283 ~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 362 (429)
++|.++++ +.+..+++|+.|++++|.+++++. ....++|+.|
T Consensus 251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------~~~l~~L~~L 292 (347)
T 4fmz_A 251 GTNQISDI-NAVKDLTKLKMLNVGSNQISDISV-------------------------------------LNNLSQLNSL 292 (347)
T ss_dssp CSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-------------------------------------GGGCTTCSEE
T ss_pred CCCccCCC-hhHhcCCCcCEEEccCCccCCChh-------------------------------------hcCCCCCCEE
Confidence 66655554 345666677777777776654321 1112467777
Q ss_pred cccCCcccc-CChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccc
Q 014200 363 SLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKES 418 (429)
Q Consensus 363 ~l~~~~i~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~ 418 (429)
++++|.++. .+..+..+++|++|++++|++++++. ++.+++|++|+ +++|+|+
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~--l~~N~i~ 346 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD--FANQVIK 346 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES--SSCC---
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee--hhhhccc
Confidence 777777773 45667789999999999999998655 78899999999 9999886
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-35 Score=282.38 Aligned_cols=349 Identities=25% Similarity=0.370 Sum_probs=296.2
Q ss_pred HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~ 84 (429)
+..+++|++|++++|.++++++ +.. +++|++|++++|.+..++. +.++++|++|++++|.++.++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~------------l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKN------------LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTT------------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred hhhhcCCCEEECCCCccCCchh--hhc------------cccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence 5678999999999999998876 443 7889999999999998886 999999999999999999886
Q ss_pred hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (429)
Q Consensus 85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~ 164 (429)
. +..+++|++|++++|.+..++. +..+++|++++++ +.+..++ .+..+++|++|++++|.+..++ .+..+++|+.
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 203 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLES 203 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred H-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCE
Confidence 5 8999999999999999888764 8899999999996 4555553 3889999999999999988774 4788999999
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCc
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 244 (429)
|++++|.+....+ +..+++|++|++++|.++.++ .+..+++|+.|++++|.+...+. +..+++|++|++++|.++.
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc
Confidence 9999999887765 778899999999999998875 57789999999999999987765 8899999999999999998
Q ss_pred cChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHH
Q 014200 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324 (429)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 324 (429)
++. +..+++|+.|++++|.+.+++......+|++|++++|.++++++ +..+++|+.|++++|.+++++.
T Consensus 280 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------- 348 (466)
T 1o6v_A 280 ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS--------- 348 (466)
T ss_dssp CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG---------
T ss_pred ccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchh---------
Confidence 876 88999999999999999988776666679999999999999766 7899999999999999876421
Q ss_pred HHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcc---
Q 014200 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS--- 401 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~--- 401 (429)
...+++|+.|++++|.++.++. +..++.|+.|++++|.+++.|..+..
T Consensus 349 ----------------------------l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~~~~~~ 399 (466)
T 1o6v_A 349 ----------------------------LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVS 399 (466)
T ss_dssp ----------------------------GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCCCSEEE
T ss_pred ----------------------------hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhhcccce
Confidence 1123689999999999997775 88999999999999999986654321
Q ss_pred ----cccceeeccccCCCcccc
Q 014200 402 ----CASLQVKFSDLVTNKESC 419 (429)
Q Consensus 402 ----l~~L~~L~~~l~~n~i~~ 419 (429)
+..+..+. ++.+.|++
T Consensus 400 ip~~~~~~~~~~--~~~~~is~ 419 (466)
T 1o6v_A 400 IPNTVKNVTGAL--IAPATISD 419 (466)
T ss_dssp EECCCBCTTSCB--CCCSEEST
T ss_pred ecccccccCCCe--ecCceecC
Confidence 23344445 55555544
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-34 Score=276.87 Aligned_cols=342 Identities=24% Similarity=0.298 Sum_probs=203.2
Q ss_pred HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~ 84 (429)
+..+++|++|+++++.++.+|. +. .+++|++|++++|.++.++ +..+++|++|++++|.++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~--l~------------~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTG--IE------------KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTT--GG------------GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred hhHcCCCCEEEccCCCcccChh--hc------------ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 3445566666666666655541 22 1455666666666666553 555666666666666665553
Q ss_pred hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCc-cccCCccccccCCCc
Q 014200 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMS 163 (429)
Q Consensus 85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~ 163 (429)
+.++++|++|++++|.+..++ ++.+++|++|++++|++..++ +..+++|++|++++|. +..+ .+..+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 555666666666666665553 555666666666666665542 4555566666666652 2233 344555666
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 243 (429)
.|++++|.++.++ +..++.|+.+++++|.++.++ +..+++|+.|++++|.++.+| +..+++|++|++++|.++
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 6666666555543 445555666666666555542 455556666666666555554 455556666666666555
Q ss_pred ccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCC-ccccccCCC
Q 014200 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRT-LRSSLVNGP 321 (429)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~ 321 (429)
.++ .+.+++|+.|++++|. ++.+++++|.+.+ +| +..+++|+.|++++|...+ ++.. .
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~- 306 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---A- 306 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---T-
T ss_pred CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---C-
Confidence 543 3345555555555432 3445555555433 32 4677889999999887432 2210 0
Q ss_pred cHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChh---
Q 014200 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--- 398 (429)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~--- 398 (429)
..+... ....+++|+.|++++|+++.++ +..+++|+.|++++|++++++.-
T Consensus 307 ---------~~L~~L---------------~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L 360 (457)
T 3bz5_A 307 ---------AGITEL---------------DLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKI 360 (457)
T ss_dssp ---------CCCSCC---------------CCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGS
T ss_pred ---------CcceEe---------------chhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccccccc
Confidence 000000 0122368899999999999874 78899999999999999875421
Q ss_pred ---------hcccccceeeccccCCCcccc-cccccc
Q 014200 399 ---------LSSCASLQVKFSDLVTNKESC-ISGCYL 425 (429)
Q Consensus 399 ---------l~~l~~L~~L~~~l~~n~i~~-i~~~~~ 425 (429)
...+..|+.++ +++|++++ ||+.++
T Consensus 361 ~l~~n~l~g~~~~~~l~~l~--l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 361 PALNNNFEAEGQTITMPKET--LTNNSLTIAVSPDLL 395 (457)
T ss_dssp SGGGTSEEEEEEEEECCCBC--CBTTBEEEECCTTCB
T ss_pred cccCCcEEecceeeecCccc--cccCcEEEEcChhHh
Confidence 12335678889 99999998 887654
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-34 Score=276.99 Aligned_cols=307 Identities=25% Similarity=0.320 Sum_probs=161.5
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCC
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~ 125 (429)
+|++|++++|.++.+|.. .++|++|++++|.++.++.. .++|++|++++|.+..+| .++++++|++|++++|+
T Consensus 92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc
Confidence 355555555555554422 24555555555555444321 145555555555555554 35555555555555555
Q ss_pred CCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccC
Q 014200 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (429)
Q Consensus 126 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 205 (429)
+..+|... .+|++|++++|.++.+| .+..+++|+.|++++|.+..++.. .++|+++++++|.++.+|. +..
T Consensus 165 l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~-~~~ 235 (454)
T 1jl5_A 165 LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE-LQN 235 (454)
T ss_dssp CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC-CTT
T ss_pred CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc-cCC
Confidence 55544322 35555555555555544 355555555555555555543321 1355555555555555542 455
Q ss_pred CccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCC
Q 014200 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (429)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n 285 (429)
+++|+.|++++|.+..+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+++++.. +.+|++|++++|
T Consensus 236 l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N 307 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL--PPNLYYLNASSN 307 (454)
T ss_dssp CTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC--CTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc--CCcCCEEECcCC
Confidence 55555555555555554432 24555555555555554432 24555555555555554321 234555555555
Q ss_pred CCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccccccc
Q 014200 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (429)
Q Consensus 286 ~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 365 (429)
.+++++.. .++|+.|++++|.+++++.. +++|+.|+++
T Consensus 308 ~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---------------------------------------~~~L~~L~L~ 345 (454)
T 1jl5_A 308 EIRSLCDL---PPSLEELNVSNNKLIELPAL---------------------------------------PPRLERLIAS 345 (454)
T ss_dssp CCSEECCC---CTTCCEEECCSSCCSCCCCC---------------------------------------CTTCCEEECC
T ss_pred cCCcccCC---cCcCCEEECCCCcccccccc---------------------------------------CCcCCEEECC
Confidence 55543321 13566666666655443321 2578999999
Q ss_pred CCccccCChhhhccCCCcEEeCCCCcccc---CChhhccc-------------ccceeeccccCCCcccc---cccc
Q 014200 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQE---LPPELSSC-------------ASLQVKFSDLVTNKESC---ISGC 423 (429)
Q Consensus 366 ~~~i~~~~~~~~~~~~L~~L~ls~n~i~~---~~~~l~~l-------------~~L~~L~~~l~~n~i~~---i~~~ 423 (429)
+|.++.+|. .+++|++|++++|++++ +|..+..+ ++|++|+ +++|++++ ||++
T Consensus 346 ~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~--ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 346 FNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH--VETNPLREFPDIPES 417 (454)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE--CCCCcCCccccchhh
Confidence 999999987 47899999999999887 67788777 8899999 99999986 5554
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-34 Score=290.26 Aligned_cols=163 Identities=21% Similarity=0.207 Sum_probs=122.6
Q ss_pred cccCCCcEEEcCCCCCCcc--ChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCC--CCccccCCCCC
Q 014200 227 SGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSG--LPPEIGKMTTL 300 (429)
Q Consensus 227 ~~~~~L~~L~l~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~--l~~~l~~~~~L 300 (429)
..+++|+.+++..+..... +..+..+++++.+++++|.+.......+. ..++.+++++|.+.. .|..+..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 3444555555554433322 23456677777888888777765444332 348999999887544 57778889999
Q ss_pred CEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCCh-hhhcc
Q 014200 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEA 379 (429)
Q Consensus 301 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~ 379 (429)
+.|++++|.+++++...|.+ .++|++|+|++|+|+.++. .+..+
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~-----------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNS-----------------------------------LSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp CEEECTTSCCCEECTTTTTT-----------------------------------CTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred CEEECCCCccCCcChHHHcC-----------------------------------CCCCCEEECCCCcCCCCChhHHhCC
Confidence 99999999998876555544 2589999999999997754 56789
Q ss_pred CCCcEEeCCCCcccc-CChhhccc-ccceeeccccCCCccccccccccccc
Q 014200 380 GEITKLDLSRNSIQE-LPPELSSC-ASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~-~~~~l~~l-~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
++|++|||++|+|++ .|+.+..+ ++|++|+ +++|+++| +|-+.|.
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~--L~~Np~~C--~C~~~~~ 588 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN--LTQNDFAC--TCEHQSF 588 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE--CTTCCBCC--SGGGHHH
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE--eeCCCCcc--cCCcHHH
Confidence 999999999999999 67778887 6899999 99999999 8887774
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.5e-34 Score=274.25 Aligned_cols=351 Identities=24% Similarity=0.237 Sum_probs=188.4
Q ss_pred HhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCC-ccchhccCCCC-------------CCE
Q 014200 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPL-------------LTV 72 (429)
Q Consensus 7 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~-------------L~~ 72 (429)
+.+.|++|++++++++.+|+.+. . +++|++|++++|.+. .+|..++++++ +++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~-~------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAE-N------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccccchhhhcccCchhhCChhHh-c------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence 35789999999999988887542 2 455666666655554 45555554443 366
Q ss_pred EECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccC
Q 014200 73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 152 (429)
Q Consensus 73 L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 152 (429)
|++++|.++.+|.. .++|++|++++|.++.+|.. .++|++|++++|++..++.. .++|++|++++|.++.+
T Consensus 76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKL 146 (454)
T ss_dssp EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred EEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCC
Confidence 66666665555441 24566666666655555532 25566666666655554331 14566666666665555
Q ss_pred CccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCC
Q 014200 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232 (429)
Q Consensus 153 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 232 (429)
| .+..+++|++|++++|.+..++.. .++|++|++++|.++.+| .+..+++|+.|++++|.+..+|... ++|
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L 217 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL 217 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence 5 355566666666666655544321 235666666666665555 3555666666666666555544322 356
Q ss_pred cEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (429)
Q Consensus 233 ~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~ 312 (429)
++|++++|.++.+|. +..+++|+.|++++|.+++++.. ..+|++|++++|.++++|.. .++|+.|++++|.+++
T Consensus 218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence 666666666555552 55566666666666665554432 23466666666666555442 2455666666665554
Q ss_pred ccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcc
Q 014200 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392 (429)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i 392 (429)
++... . .+....++..... .....+++|+.|++++|+++.+|.. +++|++|++++|++
T Consensus 292 l~~~~------~-------~L~~L~l~~N~l~------~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 292 LSELP------P-------NLYYLNASSNEIR------SLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL 349 (454)
T ss_dssp ESCCC------T-------TCCEEECCSSCCS------EECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred ccCcC------C-------cCCEEECcCCcCC------cccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc
Confidence 33110 0 0000000000000 0011235889999999999998865 58999999999999
Q ss_pred ccCChhhcccccceeeccccCCCcccccc
Q 014200 393 QELPPELSSCASLQVKFSDLVTNKESCIS 421 (429)
Q Consensus 393 ~~~~~~l~~l~~L~~L~~~l~~n~i~~i~ 421 (429)
+++|. .+++|++|+ +++|+++++|
T Consensus 350 ~~lp~---~l~~L~~L~--L~~N~l~~l~ 373 (454)
T 1jl5_A 350 AEVPE---LPQNLKQLH--VEYNPLREFP 373 (454)
T ss_dssp SCCCC---CCTTCCEEE--CCSSCCSSCC
T ss_pred ccccc---hhhhccEEE--CCCCCCCcCC
Confidence 99888 478999999 9999999944
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.6e-33 Score=261.90 Aligned_cols=307 Identities=20% Similarity=0.302 Sum_probs=223.0
Q ss_pred HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~ 84 (429)
+..+++++.|+++++.+.+++. +. .+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~------------~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IE------------YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred chhcccccEEEEeCCccccchh--hh------------hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch
Confidence 4578899999999999998864 33 27889999999999999886 999999999999999999875
Q ss_pred hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (429)
Q Consensus 85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~ 164 (429)
.+.++++|++|++++|.+..++. +..+++|++|++++|.....+..+..+++|++|++++|.+..++. +..+++|+.
T Consensus 105 -~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181 (347)
T ss_dssp -GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred -HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCE
Confidence 68999999999999999998876 889999999999999655555668899999999999999887755 788999999
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCc
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 244 (429)
|++++|.+..++. +..++.|+.+++++|.+...+. +..+++|+.|++++|.+..
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~----------------------- 235 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD----------------------- 235 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------------
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-----------------------
Confidence 9999998877654 5566666666666665554433 4444555555555554444
Q ss_pred cChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHH
Q 014200 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324 (429)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 324 (429)
++. +..+++|++|++++|.++.++......+|++|++++|.++++ +.+..+++|+.|++++|.+++.+...+
T Consensus 236 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l------ 307 (347)
T 4fmz_A 236 LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVI------ 307 (347)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHH------
T ss_pred Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHh------
Confidence 433 444455555555555554443333333455566666655555 336667777777777777654321111
Q ss_pred HHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccc
Q 014200 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~ 393 (429)
...++|+.|++++|.++.++. +..+++|++|++++|.|+
T Consensus 308 -----------------------------~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 -----------------------------GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -----------------------------HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred -----------------------------hccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 112467777777777777665 778899999999999876
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=280.41 Aligned_cols=355 Identities=17% Similarity=0.199 Sum_probs=243.4
Q ss_pred cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCC
Q 014200 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ 125 (429)
Q Consensus 48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~ 125 (429)
+++++++++++.+|..+. ++|++|++++|.++.++ ..|.++++|++|++++|.+..+ |..+.++++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 689999999999998665 89999999999999876 5899999999999999999977 6789999999999999999
Q ss_pred CCcCCccccCCCCCCEEEcCCCcccc--CCccccccCCCcEEEccCCcccccChhhhhccccc--ceeecCCccC--C-c
Q 014200 126 LKELPSSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--N-G 198 (429)
Q Consensus 126 l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l--~-~ 198 (429)
+..+|.. .+++|++|++++|.++. +|..+..+++|++|++++|.+... .+..++.| +++++++|.+ . .
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccccc
Confidence 9988876 88999999999999985 568899999999999999988762 36677777 9999998877 2 2
Q ss_pred CCccccC--------------------------Cc---------------------------------------------
Q 014200 199 MPETIGS--------------------------LS--------------------------------------------- 207 (429)
Q Consensus 199 ~~~~~~~--------------------------~~--------------------------------------------- 207 (429)
.|..+.. ++
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 2332222 22
Q ss_pred ------------cCCeEeccCCcCc-cCCccc-----cccCCCcEEEcCCCCCCccC-hhhcCC---CCCCEEECCCCcC
Q 014200 208 ------------RLIRLDLHQNRIL-SIPSSI-----SGCCSLAEFYMGNNALSALP-AELGKL---SKLGTLDLHSNQL 265 (429)
Q Consensus 208 ------------~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~n~i~~~~-~~~~~~---~~L~~L~l~~n~l 265 (429)
+|+.|++++|.+. .+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc
Confidence 3444444444444 444444 4555555555555544 333 222111 3355555555544
Q ss_pred ccccchhhccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCC
Q 014200 266 KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (429)
Q Consensus 266 ~~~~~~~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (429)
..........+|++|++++|.+++ ++..+.++++|+.|++++|.+++++. .+..+ ........+......
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~---~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK------IAEMT---TQMKSLQQLDISQNS 385 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH------HHHHH---TTCTTCCEEECCSSC
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc------chHHH---hhCCCCCEEECCCCc
Confidence 433321223346666666666666 45556666666666666666654321 00000 000011111111100
Q ss_pred hhh-HHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200 345 KED-LITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG 422 (429)
Q Consensus 345 ~~~-~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~ 422 (429)
... .-...+...++|++|++++|.++ .+|..+. ++|+.|++++|+++.+|..+..+++|++|+ +++|+++.+|+
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~--L~~N~l~~l~~ 461 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN--VASNQLKSVPD 461 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE--CCSSCCCCCCT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE--CCCCcCCccCH
Confidence 000 00111233468899999999986 4554442 789999999999999999888999999999 99999999998
Q ss_pred c
Q 014200 423 C 423 (429)
Q Consensus 423 ~ 423 (429)
.
T Consensus 462 ~ 462 (520)
T 2z7x_B 462 G 462 (520)
T ss_dssp T
T ss_pred H
Confidence 7
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7e-34 Score=269.98 Aligned_cols=304 Identities=21% Similarity=0.272 Sum_probs=172.3
Q ss_pred cCCccEEEcCCCCCCccchh-ccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEe
Q 014200 44 AVDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFD 120 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~ 120 (429)
++++++++++++.++.+|.. +..+++|++|++++|.++.++. .+..+++|++|++++|.+..++ ..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34566666666666655543 4556666666666666555443 5556666666666666555443 2345556666666
Q ss_pred cCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc
Q 014200 121 CSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198 (429)
Q Consensus 121 l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 198 (429)
+++|++..+|.. +..+++|++|++++|.+..++ ..+..+++|+.|++++|.+..++ +..++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~-------------- 186 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIP-------------- 186 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCT--------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---ccccc--------------
Confidence 666655555543 345555555555555555432 23455555555555555554432 23344
Q ss_pred CCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccC
Q 014200 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278 (429)
Q Consensus 199 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~ 278 (429)
+|+.+++++|.+..+ ...++|++|++++|.++.++.. ..++|+.|++++|.+++.+.....++|+
T Consensus 187 ---------~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~ 251 (390)
T 3o6n_A 187 ---------SLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLV 251 (390)
T ss_dssp ---------TCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred ---------ccceeeccccccccc----CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCcc
Confidence 444455544444332 1223455555555555544322 2345555666665555544333334466
Q ss_pred EEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccc
Q 014200 279 VLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357 (429)
Q Consensus 279 ~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (429)
+|++++|.++++ +..+.++++|+.|++++|.++.++... + ..+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~----------------------------------~l~ 295 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--Q----------------------------------PIP 295 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS--S----------------------------------CCT
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc--C----------------------------------CCC
Confidence 666666666553 555666777777777777666544221 1 124
Q ss_pred ccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccc
Q 014200 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 358 ~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+|+.|++++|.++.+|..+..+++|++|++++|++++++ +..+++|++|+ +++|++++
T Consensus 296 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~--l~~N~~~~ 353 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLT--LSHNDWDC 353 (390)
T ss_dssp TCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEE--CCSSCEEH
T ss_pred CCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEE--cCCCCccc
Confidence 667777777777777777777777777777777777664 45667777777 77777776
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=291.98 Aligned_cols=382 Identities=19% Similarity=0.211 Sum_probs=237.6
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCC-CCCc-chhhh
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG 88 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~-i~~~-~~~l~ 88 (429)
+..|+++++++.+|. .. +++++|++++|.++.+ +..|.++++|++|++++|. +..+ |.+|.
T Consensus 7 ~~~dcs~~~L~~vP~-lp---------------~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VL---------------NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-SC---------------TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-CC---------------CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 468999999999998 43 4588899998888866 4578888999999998884 4455 56888
Q ss_pred CCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCc-CCcc--ccCCCCCCEEEcCCCccccC--CccccccCCC
Q 014200 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSL--PEDLADCSKM 162 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~-~~~~--~~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L 162 (429)
++++|++|++++|.+..+ |..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+ +..+..+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 889999999998888865 6778888899999998888874 4443 77888899999998888754 3467888899
Q ss_pred cEEEccCCcccccChhhhhcc--cccceeecCCccCCc-CCccccCCcc------CCeEeccCCcCcc-CCcc-------
Q 014200 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS------- 225 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~-~~~~~~~~~~------L~~L~l~~~~~~~-~~~~------- 225 (429)
++|++++|.+.......+..+ ++|+.+++++|.+.. .+..+..+++ |+.|++++|.+.. .+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 999998888876655556555 677777777776643 2333333332 6666666664331 1110
Q ss_pred -----------------------------ccc--cCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh
Q 014200 226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (429)
Q Consensus 226 -----------------------------~~~--~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 273 (429)
+.+ .++++.|++++|.++.+ +..+..+++|+.|++++|.++.+....+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 111 24566666666666544 3445666666666666666665543322
Q ss_pred --ccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh---
Q 014200 274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED--- 347 (429)
Q Consensus 274 --~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 347 (429)
..+|++|++++|.++++ +..+..+++|+.|++++|.+..++...|.+... +....++........
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~---------L~~L~Ls~N~l~~i~~~~ 381 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK---------LQTLDLRDNALTTIHFIP 381 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC---------CCEEEEETCCSCCCSSCC
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC---------CCEEECCCCCCCcccCCC
Confidence 22366666666666554 445666666666666666665555443322110 000000000000000
Q ss_pred ----------HHhhhhccccccccccccCCccccCCh--hhhccCCCcEEeCCCCccccCChh--hcccccceeeccccC
Q 014200 348 ----------LITMATRLSVTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQELPPE--LSSCASLQVKFSDLV 413 (429)
Q Consensus 348 ----------~~~~~~~~~~~L~~l~l~~~~i~~~~~--~~~~~~~L~~L~ls~n~i~~~~~~--l~~l~~L~~L~~~l~ 413 (429)
.+........+++.+++++|.++.++. .+..+++|++|++++|++++++.. +..+++|++|+ ++
T Consensus 382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~--Ls 459 (844)
T 3j0a_A 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF--LG 459 (844)
T ss_dssp SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE--EE
T ss_pred CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc--CC
Confidence 000000112345555555555554332 233667777777777777775554 34567777777 77
Q ss_pred CCccccc
Q 014200 414 TNKESCI 420 (429)
Q Consensus 414 ~n~i~~i 420 (429)
+|.++.+
T Consensus 460 ~N~l~~~ 466 (844)
T 3j0a_A 460 ENMLQLA 466 (844)
T ss_dssp SCCCSSS
T ss_pred CCccccc
Confidence 7777643
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=272.61 Aligned_cols=312 Identities=20% Similarity=0.287 Sum_probs=198.6
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCc-chhhhC
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~-~~~l~~ 89 (429)
+.+++++++++.+|..++ +++++|++++|.++.++ ..|.++++|++|++++|.++.+ |.+|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP---------------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCcCCCCCC---------------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence 567888888888887653 34788888888888764 4688888888888888888766 557888
Q ss_pred CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccC-CccccccCCCcEEE
Q 014200 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD 166 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~ 166 (429)
+++|++|++++|.+..+|.. +.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 88888888888888877654 67788888888888887754 44667777888888887777644 44567777777777
Q ss_pred ccCCcccccChhhhhcccccceeecCCccCCcCC-ccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCCc
Q 014200 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSA 244 (429)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~ 244 (429)
+++|.+..++...+..+++|+.|++++|.+..++ ..+..+++|+.|++++|... .++.......+|++|++++|.++.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 7777777776666666677777777666665443 24555566666666655433 333333333455555555555555
Q ss_pred cCh-hhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcH
Q 014200 245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323 (429)
Q Consensus 245 ~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 323 (429)
+|. .+..+++|+.|++++|.++.++. ..+.++++|+.|++++|.++.+....|.+
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--- 294 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEG---------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRG--- 294 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECT---------------------TSCTTCTTCCEEECCSSCCSEECTTTBTT---
T ss_pred cCHHHhcCccccCeeECCCCcCCccCh---------------------hhccccccCCEEECCCCccceECHHHhcC---
Confidence 542 34555555555555554443322 23455566666666666655433222211
Q ss_pred HHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCcccc
Q 014200 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE 394 (429)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~ 394 (429)
.++|+.|++++|.++.++.. +..+++|++|++++|.+..
T Consensus 295 --------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 295 --------------------------------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp --------------------------------CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred --------------------------------cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 13445555555555554443 3356666667776666654
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.3e-33 Score=266.77 Aligned_cols=305 Identities=20% Similarity=0.238 Sum_probs=180.8
Q ss_pred cccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEec
Q 014200 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (429)
Q Consensus 42 ~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l 121 (429)
.++++|++|+++++.++.+| .+..+++|++|++++|.++.+| +..+++|++|++++|.+..++ ++++++|++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 34566777777776666665 4666667777777777666654 566666777777766666653 566666666666
Q ss_pred CCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCc-ccccChhhhhcccccceeecCCccCCcCC
Q 014200 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGMP 200 (429)
Q Consensus 122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 200 (429)
++|++..++ +..+++|++|++++|.++.++ +..+++|+.|++++|. +..++ +..+++|++|++++|.++.+|
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec
Confidence 666666653 556666666666666666542 5556666666666652 22221 344455555555555555443
Q ss_pred ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEE
Q 014200 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL 280 (429)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l 280 (429)
+..+++|+.|++++|.++.++ +..+++|++|++++|.++.+| +..+++|+.|++++
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~------------------ 242 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSV------------------ 242 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS------------------
T ss_pred --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeC------------------
Confidence 444455555555555544431 444455555555555554443 44444455555544
Q ss_pred EccCCCCCCCCccccCCCCCCEEEccCCCCCCccccc--cCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccc
Q 014200 281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL--VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358 (429)
Q Consensus 281 ~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (429)
|++++++ +..+++|+.++++++.++.+.-.. +.+..+ ...+++
T Consensus 243 ----N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----------------------------~~~l~~ 287 (457)
T 3bz5_A 243 ----NPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----------------------------AEGCRK 287 (457)
T ss_dssp ----SCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----------------------------CTTCTT
T ss_pred ----CcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----------------------------cccccc
Confidence 4444443 233444555554444444332110 011111 112367
Q ss_pred cccccccCCccc-cCCh--------hhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccc
Q 014200 359 SKELSLEGMNLS-AIPS--------EIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCIS 421 (429)
Q Consensus 359 L~~l~l~~~~i~-~~~~--------~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~ 421 (429)
|+.|++++|... .+|. .+..+++|++|++++|++++++ ++.|++|++|+ +++|+++++|
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~--l~~N~l~~l~ 355 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLS--CVNAHIQDFS 355 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEE--CCSSCCCBCT
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEE--CCCCCCCCcc
Confidence 888888888643 2221 2567899999999999999974 88999999999 9999999865
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.5e-33 Score=275.33 Aligned_cols=333 Identities=19% Similarity=0.226 Sum_probs=233.1
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEec
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDC 121 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l 121 (429)
|...++++++++.++.+|..+. +++++|++++|.++.++ .+|.++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 5556899999999999997664 89999999999999886 5899999999999999999977 567899999999999
Q ss_pred CCCCCCcCCccccCCCCCCEEEcCCCccccCC--ccccccCCCcEEEccCCcccccChhhhhccccc--ceeecCCccC-
Q 014200 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL- 196 (429)
Q Consensus 122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l- 196 (429)
++|++..+|.. .+++|++|++++|.++.++ ..+..+++|++|++++|.+.... +..++.+ +++++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence 99999998876 8999999999999999754 78999999999999999887643 4555666 9999998877
Q ss_pred -Cc-CCcccc--------------------------CCccCCeEecc---------------------------------
Q 014200 197 -NG-MPETIG--------------------------SLSRLIRLDLH--------------------------------- 215 (429)
Q Consensus 197 -~~-~~~~~~--------------------------~~~~L~~L~l~--------------------------------- 215 (429)
.. .|..+. .+++|+.++++
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 32 222222 22334444444
Q ss_pred ----------------------CCcCc-cCCccc-----cccC--------------------------CCcEEEcCCCC
Q 014200 216 ----------------------QNRIL-SIPSSI-----SGCC--------------------------SLAEFYMGNNA 241 (429)
Q Consensus 216 ----------------------~~~~~-~~~~~~-----~~~~--------------------------~L~~L~l~~n~ 241 (429)
+|.+. .+|..+ ..++ ++++|++++|.
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 33333 233222 1111 23333333333
Q ss_pred CCccChhhcCCCCCCEEECCCCcCccccchh--hccccCEEEccCCCCCCCC---ccccCCCCCCEEEccCCCCCC-ccc
Q 014200 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLP---PEIGKMTTLRKLLLTGNPLRT-LRS 315 (429)
Q Consensus 242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~l~l~~n~l~~l~---~~l~~~~~L~~L~l~~~~i~~-~~~ 315 (429)
+..++. ...+++|+.|++++|.+++..+.. ...+|++|++++|.+++++ ..+.++++|+.|++++|.+++ ++.
T Consensus 343 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 343 FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 222110 134555666666666555422221 1223666666666665543 235555666666666666554 443
Q ss_pred cccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc
Q 014200 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE 394 (429)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~ 394 (429)
..+. ..++|+.|++++|.++ .+|..+. ++|++|++++|+++.
T Consensus 422 ~~~~-----------------------------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ 464 (562)
T 3a79_B 422 RTCA-----------------------------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS 464 (562)
T ss_dssp CCCC-----------------------------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC
T ss_pred hhhc-----------------------------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc
Confidence 3222 2358899999999987 3444332 789999999999999
Q ss_pred CChhhcccccceeeccccCCCcccccccc
Q 014200 395 LPPELSSCASLQVKFSDLVTNKESCISGC 423 (429)
Q Consensus 395 ~~~~l~~l~~L~~L~~~l~~n~i~~i~~~ 423 (429)
+|..+..+++|++|+ +++|+++.+|+.
T Consensus 465 ip~~~~~l~~L~~L~--L~~N~l~~l~~~ 491 (562)
T 3a79_B 465 IPKDVTHLQALQELN--VASNQLKSVPDG 491 (562)
T ss_dssp CCTTTTSSCCCSEEE--CCSSCCCCCCTT
T ss_pred cChhhcCCCCCCEEE--CCCCCCCCCCHH
Confidence 999888999999999 999999999987
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-33 Score=269.67 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=278.2
Q ss_pred ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCc-cC-CccccCCCCcCEEecCC
Q 014200 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS 123 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~-~l-~~~~~~~~~L~~L~l~~ 123 (429)
-+.++.++++++.+|. + .++|++|++++|.++.+ |..+.++++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3568888888999986 3 37899999999999977 668999999999999999876 45 45689999999999999
Q ss_pred CCCCcC-CccccCCCCCCEEEcCCCcccc-CCc--cccccCCCcEEEccCCcccccChh-hhhcccccceeecCCccCCc
Q 014200 124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPE--DLADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG 198 (429)
Q Consensus 124 ~~l~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~--~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~ 198 (429)
|++..+ |..+..+++|++|++++|.++. .+. .+..+++|++|++++|.+..+.+. .+..+++|++|++++|.++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 999866 6789999999999999999884 333 388899999999999999887544 47899999999999999976
Q ss_pred C-CccccCC--ccCCeEeccCCcCccCCcc---------ccccCCCcEEEcCCCCCCc-cChhhc---CCCCCCEEECCC
Q 014200 199 M-PETIGSL--SRLIRLDLHQNRILSIPSS---------ISGCCSLAEFYMGNNALSA-LPAELG---KLSKLGTLDLHS 262 (429)
Q Consensus 199 ~-~~~~~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~n~i~~-~~~~~~---~~~~L~~L~l~~ 262 (429)
. +..+..+ .+++.+++++|.+..++.. +..+++|++|++++|.++. .+..+. ..++|+.+++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 5 4444443 6899999999998876532 3456889999999999984 355543 348999999998
Q ss_pred CcCcccc----------ch----hhccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHH
Q 014200 263 NQLKEYC----------VE----ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (429)
Q Consensus 263 n~l~~~~----------~~----~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~ 327 (429)
|...... .. ....+++++++++|.+++ .+..+..+++|+.|++++|.+++++...+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------- 321 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------- 321 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-------
Confidence 8543211 11 112469999999999998 5777999999999999999998765444332
Q ss_pred HHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-ChhhhccCCCcEEeCCCCcccc-CChhhcccccc
Q 014200 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASL 405 (429)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L 405 (429)
.++|+.|++++|.++.+ +..+..+++|++|++++|++++ .|..+..+++|
T Consensus 322 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 322 ----------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp ----------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ----------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 25899999999999966 5677889999999999999999 68899999999
Q ss_pred eeeccccCCCcccccccccc
Q 014200 406 QVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 406 ~~L~~~l~~n~i~~i~~~~~ 425 (429)
++|+ +++|+++++|+..+
T Consensus 374 ~~L~--L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 374 KELA--LDTNQLKSVPDGIF 391 (455)
T ss_dssp CEEE--CCSSCCSCCCTTTT
T ss_pred cEEE--CCCCccccCCHhHh
Confidence 9999 99999999988654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.6e-33 Score=276.09 Aligned_cols=304 Identities=21% Similarity=0.251 Sum_probs=180.8
Q ss_pred CCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEc
Q 014200 68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA 144 (429)
Q Consensus 68 ~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l 144 (429)
++++.++++++.++.+|. .+.++++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 444555555555444443 34445555555555554444332 34445555555555555544432 2344555555555
Q ss_pred CCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCC
Q 014200 145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (429)
Q Consensus 145 ~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 223 (429)
++|.++.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.++.++ +..+++|+.+++++|.+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence 55555544433 344555555555555555544444555555555555555554443 33445566666666655443
Q ss_pred ccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCC-CccccCCCCCCE
Q 014200 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRK 302 (429)
Q Consensus 224 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~ 302 (429)
...++|+.|++++|.++.++..+ .++|+.|++++|.+++.+.....++|+.|++++|.++++ |..+..+++|+.
T Consensus 208 ---~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 ---AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ---ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ---cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 23345666666666666554322 256777777777766654444445577777777777764 566777888888
Q ss_pred EEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCC
Q 014200 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382 (429)
Q Consensus 303 L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L 382 (429)
|++++|.++.++... + ..++|+.|++++|.++.+|..+..+++|
T Consensus 283 L~Ls~N~l~~l~~~~--~----------------------------------~l~~L~~L~Ls~N~l~~i~~~~~~l~~L 326 (597)
T 3oja_B 283 LYISNNRLVALNLYG--Q----------------------------------PIPTLKVLDLSHNHLLHVERNQPQFDRL 326 (597)
T ss_dssp EECTTSCCCEEECSS--S----------------------------------CCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred EECCCCCCCCCCccc--c----------------------------------cCCCCcEEECCCCCCCccCcccccCCCC
Confidence 888888877654322 1 1247788888888888888888888888
Q ss_pred cEEeCCCCccccCChhhcccccceeeccccCCCcccc
Q 014200 383 TKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 383 ~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
++|+|++|.++++| +..+++|++|+ +++|+++|
T Consensus 327 ~~L~L~~N~l~~~~--~~~~~~L~~L~--l~~N~~~~ 359 (597)
T 3oja_B 327 ENLYLDHNSIVTLK--LSTHHTLKNLT--LSHNDWDC 359 (597)
T ss_dssp SEEECCSSCCCCCC--CCTTCCCSEEE--CCSSCEEH
T ss_pred CEEECCCCCCCCcC--hhhcCCCCEEE--eeCCCCCC
Confidence 88888888888765 56778888888 88888877
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.1e-32 Score=255.40 Aligned_cols=305 Identities=19% Similarity=0.231 Sum_probs=225.4
Q ss_pred hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-
Q 014200 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA- 85 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~- 85 (429)
.++++.++++++.++.+|+..+.. +++|++|+++++.++.++. .|..+++|++|++++|.++.++.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~------------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDS------------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHH------------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCceEEEecCCchhhCChhHhcc------------cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 578899999999999999998876 6779999999999998875 79999999999999999997754
Q ss_pred hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCccccccCCCc
Q 014200 86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~ 163 (429)
.+.++++|++|++++|.+..+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++ +..+++|+
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~ 189 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 189 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCS
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccc
Confidence 789999999999999999999876 588999999999999999775 46889999999999999998763 56789999
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 243 (429)
.+++++|.+..++ ..+.++++++++|.+..++.. ..++|+.|++++|.+... ..+..+++|++|++++|.++
T Consensus 190 ~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 190 HANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp EEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred eeecccccccccC-----CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCC
Confidence 9999999776543 334677777777777655432 235666677766666654 34566666666666666666
Q ss_pred cc-ChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCc
Q 014200 244 AL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (429)
Q Consensus 244 ~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 322 (429)
.+ |..+..+++|+.|++++|.+++++ ..+..+++|+.|++++|.+++++...
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~----- 314 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALN----------------------LYGQPIPTLKVLDLSHNHLLHVERNQ----- 314 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEE----------------------CSSSCCTTCCEEECCSSCCCCCGGGH-----
T ss_pred CcChhHccccccCCEEECCCCcCcccC----------------------cccCCCCCCCEEECCCCcceecCccc-----
Confidence 44 455666666666666666555443 33344455555555555554332110
Q ss_pred HHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc
Q 014200 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394 (429)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~ 394 (429)
. ..++|+.|++++|.++.++ +..+++|++|++++|+++.
T Consensus 315 ----~---------------------------~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 315 ----P---------------------------QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ----H---------------------------HHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred ----c---------------------------ccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence 0 0134555666666665554 4567888889999888875
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-30 Score=259.00 Aligned_cols=285 Identities=21% Similarity=0.281 Sum_probs=247.2
Q ss_pred hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-
Q 014200 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA- 85 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~- 85 (429)
.+.++.++++++.++.+|+..+.. +++|++|++++|.++.++. .|..+++|++|++++|.++.++.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDS------------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHH------------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHcc------------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 467889999999999999988876 6779999999999998775 79999999999999999997765
Q ss_pred hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCccccccCCCc
Q 014200 86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~ 163 (429)
.|.++++|++|++++|.+..+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++ +..+++|+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~ 195 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 195 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCS
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhh
Confidence 679999999999999999988776 588999999999999998765 46888999999999999988764 56788999
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 243 (429)
.+++++|.+..++ ..+.|+.|++++|.+..++... .++|+.|++++|.++.. ..+..+++|+.|++++|.++
T Consensus 196 ~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 196 HANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp EEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred hhhcccCcccccc-----CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccC
Confidence 9999999877543 4467999999999998765433 36899999999998875 66889999999999999999
Q ss_pred cc-ChhhcCCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCcc
Q 014200 244 AL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314 (429)
Q Consensus 244 ~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~ 314 (429)
.+ |..+..+++|+.|++++|.+++++..... ++|+.|++++|.++.+|..+..+++|+.|++++|.++.++
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 66 77899999999999999999988766543 4699999999999999998999999999999999997654
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.7e-30 Score=236.93 Aligned_cols=246 Identities=24% Similarity=0.340 Sum_probs=157.0
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~ 123 (429)
+++.++++++.++.+|..+. ++++.|++++|.++.++. .+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45555555555555554332 455555555555554443 455555555555555555544 34455555555555555
Q ss_pred CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC---cCC
Q 014200 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN---GMP 200 (429)
Q Consensus 124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~ 200 (429)
|++..+|. .+. ++|++|++++|.+..++...+..+++|+++++++|.+. ..+
T Consensus 110 n~l~~l~~-----------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 110 NQLKELPE-----------------------KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp SCCSBCCS-----------------------SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CcCCccCh-----------------------hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 55544443 322 45555555555555555554555555666666555553 234
Q ss_pred ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh--cccc
Q 014200 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRL 277 (429)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L 277 (429)
..+..+++|+.|++++|.+..+|..+. ++|++|++++|.++.+ +..+..+++|+.|++++|.+++++...+ ..+|
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 456667777777777777777765443 7888888888888866 5678888888888888888887665322 2458
Q ss_pred CEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCC
Q 014200 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (429)
Q Consensus 278 ~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 320 (429)
++|++++|.++.+|..+..+++|+.|++++|.+++++...|.+
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 8888888888888888888999999999999998877665543
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.2e-33 Score=270.70 Aligned_cols=367 Identities=18% Similarity=0.192 Sum_probs=278.2
Q ss_pred hhcCeeeccCCCCccCChhh-hhhhccccCCCcccccCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC
Q 014200 9 RTSGSLNLSNRSLRDVPNEV-YKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~ 82 (429)
+++++||+++++++..+... +.. +++|++|++++|.++ .++..+..+++|++|++++|.++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 57899999999987654332 443 778999999999988 456678899999999999999874
Q ss_pred c-ch-hhhCCC----CCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCCcC-----Ccc-ccCCCCCCEEEcC
Q 014200 83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-----PSS-LGRCLNLSDFKAS 145 (429)
Q Consensus 83 ~-~~-~l~~l~----~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~~~-----~~~-~~~~~~L~~L~l~ 145 (429)
. +. .+..++ +|++|++++|.+. .++..+..+++|++|++++|.+... ... ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 3 22 334455 7999999999887 3467788999999999999988632 122 2235689999999
Q ss_pred CCcccc-----CCccccccCCCcEEEccCCcccccChhhhh-----cccccceeecCCccCCc-----CCccccCCccCC
Q 014200 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (429)
Q Consensus 146 ~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~ 210 (429)
+|.++. ++..+..+++|++|++++|.+...+...+. ..++|++|++++|.++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 998884 345677789999999999988765443332 24599999999999875 466677889999
Q ss_pred eEeccCCcCccC------CccccccCCCcEEEcCCCCCCc-----cChhhcCCCCCCEEECCCCcCccccchhh------
Q 014200 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC------ 273 (429)
Q Consensus 211 ~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------ 273 (429)
+|++++|.++.. +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.+......
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 999999988743 2223468999999999999995 67778889999999999999874332211
Q ss_pred -ccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh
Q 014200 274 -QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347 (429)
Q Consensus 274 -~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (429)
..+|++|++++|.+++ ++..+..+++|+.|++++|.+++.+.. ..
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-----------~l------------------ 361 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-----------EL------------------ 361 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-----------HH------------------
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-----------HH------------------
Confidence 1369999999999986 455678889999999999987532110 00
Q ss_pred HHhhhhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc-----CChhhcc-cccceeeccccCCCc
Q 014200 348 LITMATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSS-CASLQVKFSDLVTNK 416 (429)
Q Consensus 348 ~~~~~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~~-l~~L~~L~~~l~~n~ 416 (429)
........++|++|++++|.++ .++..+..+++|++|++++|++++ +.+.+.. ..+|+.|+ +.++.
T Consensus 362 -~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~--~~~~~ 438 (461)
T 1z7x_W 362 -CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV--LYDIY 438 (461)
T ss_dssp -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE--CTTCC
T ss_pred -HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee--ecccc
Confidence 0011112368999999999999 688888999999999999999985 2222221 23577777 77776
Q ss_pred ccc
Q 014200 417 ESC 419 (429)
Q Consensus 417 i~~ 419 (429)
+..
T Consensus 439 ~~~ 441 (461)
T 1z7x_W 439 WSE 441 (461)
T ss_dssp CCH
T ss_pred cCH
Confidence 654
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=252.06 Aligned_cols=291 Identities=20% Similarity=0.250 Sum_probs=255.6
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCCCcch-h
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-A 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~~~~~-~ 86 (429)
+.++.|++++|+++.+++..|.. +++|++|++++|.++.+ +..|.++++|++|++++|.++.+|. .
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS------------FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CCCcEEECCCCccceECHhHccC------------CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 57899999999999988777665 78899999999999977 5679999999999999999998876 6
Q ss_pred hhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCc-cccccCCCc
Q 014200 87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMS 163 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~ 163 (429)
|.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 89999999999999999865 55688999999999999999866 4578899999999999999997764 488899999
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccC-CcCCccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 241 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~ 241 (429)
.|++++|.+..++...+..+++|+.|++++|.. ..++.......+|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 999999999988887789999999999999765 455665666679999999999999887 468899999999999999
Q ss_pred CCccC-hhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCC
Q 014200 242 LSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLR 311 (429)
Q Consensus 242 i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~i~ 311 (429)
++.++ ..+..+++|+.|++++|.+.++.+..+. .+|++|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 99775 4688999999999999999987655443 459999999999999865 5788999999999999985
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.2e-30 Score=236.01 Aligned_cols=280 Identities=21% Similarity=0.297 Sum_probs=242.0
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI 87 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l 87 (429)
+++.++++++.++.+|...+ +++++|++++|.++.++. .|.++++|++|++++|.++.+ |..+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 68899999999999987663 459999999999998876 699999999999999999977 6789
Q ss_pred hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccc---cCCccccccCCCc
Q 014200 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~l~~~~~L~ 163 (429)
.++++|++|++++|.+..+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.+. ..+..+..+++|+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 999999999999999998887654 799999999999997764 5788999999999999886 3456788999999
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 241 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~ 241 (429)
.|++++|.+..++... .++|++|++++|.++.+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus 175 ~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 9999999998877642 27899999999999876 567889999999999999999775 478999999999999999
Q ss_pred CCccChhhcCCCCCCEEECCCCcCccccchhhc--------cccCEEEccCCCCCC--C-CccccCCCCCCEEEccCCC
Q 014200 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG--L-PPEIGKMTTLRKLLLTGNP 309 (429)
Q Consensus 242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------~~L~~l~l~~n~l~~--l-~~~l~~~~~L~~L~l~~~~ 309 (429)
++.+|..+..+++|+.|++++|.+++++...+. ..++.+++++|.+.. + +..+..+++++.+++++|+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999999999999999999987765542 348899999999875 3 4678888999999999874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.7e-30 Score=236.03 Aligned_cols=279 Identities=27% Similarity=0.357 Sum_probs=218.3
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI 87 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l 87 (429)
.++.+++++++++.+|..++ +++++|++++|.++.++. .|.++++|++|++++|.++.+ |.++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 57888888888888887653 358888998888887754 688888999999988888866 5678
Q ss_pred hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccc---cCCccccccCCCc
Q 014200 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~l~~~~~L~ 163 (429)
.++++|++|++++|.+..+|..+. ++|++|++++|++..++. .+..+++|++|++++|.++ ..+..+..+ +|+
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 888899999998888888877654 788899998888887765 4778888999999888876 334555555 888
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccCCcCC-ccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 241 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~ 241 (429)
.|++++|.+..++... .++|++|++++|.++.++ ..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus 176 ~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 8888888888776542 268888888888887764 56788888999999988888765 467888889999999888
Q ss_pred CCccChhhcCCCCCCEEECCCCcCccccchhhc--------cccCEEEccCCCCC--C-CCccccCCCCCCEEEccCCC
Q 014200 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGNP 309 (429)
Q Consensus 242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------~~L~~l~l~~n~l~--~-l~~~l~~~~~L~~L~l~~~~ 309 (429)
++.+|..+..+++|+.|++++|.++.++...+. ..++.+++++|.+. . .+..+..+++|+.+++++|+
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888888999999999888877654432 33788888888877 3 34567888888888888774
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=4.8e-29 Score=251.68 Aligned_cols=337 Identities=20% Similarity=0.243 Sum_probs=227.2
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AI 87 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l 87 (429)
++++|||++|+|+.+|+..|.. +++|++|++++|.++.++. +|+++++|++|++++|.++.+|. +|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 4666666666666666665554 6667888887777777765 47777788888888777777654 67
Q ss_pred hCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCccccCC-ccccc-----
Q 014200 88 GELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLAD----- 158 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~----- 158 (429)
.++++|++|++++|.++.+++. ++++++|++|++++|.+.. +|..+..+++|++|++++|.++.++ ..+..
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 7777888888877777776553 6777778888877777763 3556667777777777776654221 11100
Q ss_pred --------------------------------------------------------------------------------
Q 014200 159 -------------------------------------------------------------------------------- 158 (429)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (429)
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----------------------------------------------cCCCcEEEccCCcccccChh--------------
Q 014200 159 ----------------------------------------------CSKMSKLDVEGNKLTVLSNN-------------- 178 (429)
Q Consensus 159 ----------------------------------------------~~~L~~L~l~~~~~~~~~~~-------------- 178 (429)
...++.+++.++.+..+...
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 01122222222211111000
Q ss_pred -----hhhcccccceeecCCccCCc--------------------------CCccccCCccCCeEeccCCcCccC--Ccc
Q 014200 179 -----LIASWTMLTELIASKNLLNG--------------------------MPETIGSLSRLIRLDLHQNRILSI--PSS 225 (429)
Q Consensus 179 -----~~~~~~~L~~L~l~~~~l~~--------------------------~~~~~~~~~~L~~L~l~~~~~~~~--~~~ 225 (429)
....++.++.++++.|.+.. .+..+..+++++.+++..+..... ...
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence 00123445555555554421 122334455666666666655433 245
Q ss_pred ccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCc-cccchh--hccccCEEEccCCCCCCC-CccccCCCCC
Q 014200 226 ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK-EYCVEA--CQLRLSVLDLSNNSLSGL-PPEIGKMTTL 300 (429)
Q Consensus 226 ~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~-~~~~~~--~~~~L~~l~l~~n~l~~l-~~~l~~~~~L 300 (429)
+..+++++.++++.|.+... +..+..+++++.|++++|.+. .+.+.. ...+|++|++++|+++++ |..+.++++|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 77889999999999999855 566788999999999999754 333322 224599999999999995 6679999999
Q ss_pred CEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-Chhhhcc
Q 014200 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEA 379 (429)
Q Consensus 301 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~ 379 (429)
+.|++++|.++.++...|.+ .++|+.|++++|+|+.+ |..+..+
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~-----------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKC-----------------------------------LNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTT-----------------------------------CTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CEEECCCCcCCCCChhHHhC-----------------------------------CCCCCEEECCCCcCCCCCHHHHHhh
Confidence 99999999998877655543 25899999999999965 5566676
Q ss_pred -CCCcEEeCCCCccc
Q 014200 380 -GEITKLDLSRNSIQ 393 (429)
Q Consensus 380 -~~L~~L~ls~n~i~ 393 (429)
++|++|+|++|.+.
T Consensus 566 ~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred hCcCCEEEeeCCCCc
Confidence 68999999999876
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=235.38 Aligned_cols=247 Identities=24% Similarity=0.341 Sum_probs=163.6
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~ 123 (429)
+++.++++++.++.+|..+ .++++.|++++|.++.++ ..+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5778888888887777655 357888888888877664 3677888888888888877765 55677778888888888
Q ss_pred CCCCcCCccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (429)
Q Consensus 124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 202 (429)
|++..+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.+...+ ..+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~ 168 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---------------------FEPGA 168 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG---------------------SCTTS
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC---------------------CCccc
Confidence 77777766554 677777777777765543 3566677777777766654211 11222
Q ss_pred ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCCCcCccccchh--hccccCE
Q 014200 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSV 279 (429)
Q Consensus 203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~ 279 (429)
+..+ +|+.|++++|.++.+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.+++++... ...+|++
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred ccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 2233 45555555555555544332 45666666666666553 45666666666666666666555422 2234777
Q ss_pred EEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCC
Q 014200 280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (429)
Q Consensus 280 l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 320 (429)
|++++|.++.+|..+..+++|+.|++++|.+++++...|.+
T Consensus 246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp EECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred EECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 77777777778888888889999999999888776655543
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=7.7e-28 Score=238.87 Aligned_cols=291 Identities=27% Similarity=0.283 Sum_probs=239.7
Q ss_pred CCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCC
Q 014200 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (429)
Q Consensus 68 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 147 (429)
.+++.|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|+++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 468999999999999988664 899999999999998887 57899999999999998887 6789999999999
Q ss_pred ccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcccc
Q 014200 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227 (429)
Q Consensus 148 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 227 (429)
.++.+|. ..++|+.|++++|.++.++.. +++|++|++++|.++.+|. .+++|+.|++++|.++.+| .
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~ 178 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---M 178 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---C
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---c
Confidence 9998876 568899999999999887753 4889999999999988875 3478999999999999887 5
Q ss_pred ccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccC
Q 014200 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307 (429)
Q Consensus 228 ~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~ 307 (429)
.+++|+.|++++|.++.+|.. .++|+.|++++|.++.++.. ..+|+.|++++|.++++| ..+++|+.|++++
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSG 250 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred cCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCC
Confidence 578999999999999988753 47899999999999987753 356999999999999988 4568999999999
Q ss_pred CCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeC
Q 014200 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387 (429)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~l 387 (429)
|.++.++.. +++|+.|++++|+|+.+|..+..+++|+.|+|
T Consensus 251 N~L~~lp~~---------------------------------------~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 251 NRLTSLPML---------------------------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp SCCSCCCCC---------------------------------------CTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred CCCCcCCcc---------------------------------------cccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence 999876640 24789999999999999999999999999999
Q ss_pred CCCcccc-CChhhccccc-------ceeeccccCCCcccc----ccccccccc
Q 014200 388 SRNSIQE-LPPELSSCAS-------LQVKFSDLVTNKESC----ISGCYLYWN 428 (429)
Q Consensus 388 s~n~i~~-~~~~l~~l~~-------L~~L~~~l~~n~i~~----i~~~~~~~~ 428 (429)
++|.+++ .|..+..+++ +..++ ++++++.. .++|...|.
T Consensus 292 ~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~--~~~~~~~~~~~pl~~~~~~Wf 342 (622)
T 3g06_A 292 EGNPLSERTLQALREITSAPGYSGPIIRFD--MAGASAPRETRALHLAAADWL 342 (622)
T ss_dssp CSCCCCHHHHHHHHHHHHSTTCCSCEEECC--SCCC----CCCCHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHhcccccccCCCceeee--cCCCcccccccccccchhhhc
Confidence 9999988 6666654443 23344 66544322 345666664
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.3e-27 Score=234.39 Aligned_cols=261 Identities=30% Similarity=0.364 Sum_probs=231.3
Q ss_pred HhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchh
Q 014200 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (429)
Q Consensus 7 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~ 86 (429)
....++.|++++++++++|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.+|.
T Consensus 38 ~~~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~- 98 (622)
T 3g06_A 38 LNNGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV- 98 (622)
T ss_dssp HHHCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-
T ss_pred cCCCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-
Confidence 34568999999999999998664 459999999999999986 67899999999999998887
Q ss_pred hhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEE
Q 014200 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~ 166 (429)
.+++|++|++++|.+..+|. .+++|++|++++|++..+|.. +++|++|++++|.++.+|.. ..+|+.|+
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~ 167 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLW 167 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred --CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEE
Confidence 78999999999999998877 578999999999999998874 48999999999999987753 47899999
Q ss_pred ccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccC
Q 014200 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246 (429)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 246 (429)
+++|.++.++ ..+++|+.|++++|.++.+|.. +++|+.|++++|.++.++.. +++|+.|++++|.++.+|
T Consensus 168 L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 168 AYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC
T ss_pred CCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC
Confidence 9999999877 4568999999999999988763 47899999999999988753 488999999999999988
Q ss_pred hhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (429)
Q Consensus 247 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~ 312 (429)
..+++|+.|++++|.++.++. ...+|+.|++++|.++.+|..+.++++|+.|++++|++++
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred ---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 567899999999999998877 5567999999999999999999999999999999999853
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2e-30 Score=251.81 Aligned_cols=342 Identities=20% Similarity=0.187 Sum_probs=256.9
Q ss_pred CCccEEEcCCCCCCccch--hccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCccC-C-ccccCCC-
Q 014200 45 VDLQKLILAHNNIEKLKE--DLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMKI-P-DEIGSAT- 114 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~~l-~-~~~~~~~- 114 (429)
+++++|+++++.++..+. .+..+++|++|++++|.++ .++..+..+++|++|++++|.+... + .....++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 568999999999885442 3788999999999999988 4567888999999999999988742 2 2233344
Q ss_pred ---CcCEEecCCCCCC-----cCCccccCCCCCCEEEcCCCccccC-Cc----c-ccccCCCcEEEccCCcccccC----
Q 014200 115 ---ALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL-PE----D-LADCSKMSKLDVEGNKLTVLS---- 176 (429)
Q Consensus 115 ---~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~-~~----~-l~~~~~L~~L~l~~~~~~~~~---- 176 (429)
+|++|++++|++. .++..+..+++|++|++++|.++.. +. . ....++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999988 3467788999999999999988732 11 1 222468999999999888654
Q ss_pred hhhhhcccccceeecCCccCCcC-Cccc-----cCCccCCeEeccCCcCcc-----CCccccccCCCcEEEcCCCCCCcc
Q 014200 177 NNLIASWTMLTELIASKNLLNGM-PETI-----GSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSAL 245 (429)
Q Consensus 177 ~~~~~~~~~L~~L~l~~~~l~~~-~~~~-----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~ 245 (429)
...+..+++|++|++++|.+... +..+ ...++|+.|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23356679999999999988542 1111 135689999999999885 466778899999999999988742
Q ss_pred -----Chh-hcCCCCCCEEECCCCcCccc-----cchhh-ccccCEEEccCCCCCCC-----Cccc-cCCCCCCEEEccC
Q 014200 246 -----PAE-LGKLSKLGTLDLHSNQLKEY-----CVEAC-QLRLSVLDLSNNSLSGL-----PPEI-GKMTTLRKLLLTG 307 (429)
Q Consensus 246 -----~~~-~~~~~~L~~L~l~~n~l~~~-----~~~~~-~~~L~~l~l~~n~l~~l-----~~~l-~~~~~L~~L~l~~ 307 (429)
.+. +..+++|++|++++|.++.. +.... ..+|++|++++|.+++. ...+ ...++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 222 34689999999999998863 33222 34599999999988752 2222 2336999999999
Q ss_pred CCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-Chhhhc-----cCC
Q 014200 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWE-----AGE 381 (429)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~-----~~~ 381 (429)
|.++...... ........++|++|++++|.++.. +..+.. +++
T Consensus 323 n~l~~~~~~~-------------------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 323 CSFTAACCSH-------------------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp SCCBGGGHHH-------------------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCchHHHHH-------------------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 9885422110 111222346899999999999832 333332 679
Q ss_pred CcEEeCCCCccc-----cCChhhcccccceeeccccCCCcccc
Q 014200 382 ITKLDLSRNSIQ-----ELPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 382 L~~L~ls~n~i~-----~~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
|++|++++|+++ .+|+.+..+++|++|+ +++|+|++
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~--l~~N~i~~ 412 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELD--LSNNCLGD 412 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE--CCSSSCCH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEE--CCCCCCCH
Confidence 999999999998 3888899999999999 99999987
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=220.78 Aligned_cols=274 Identities=20% Similarity=0.265 Sum_probs=155.3
Q ss_pred CCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcC
Q 014200 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (429)
Q Consensus 67 ~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 145 (429)
|+.....+++++.++.+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.+..++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 92 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--------------- 92 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---------------
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---------------
Confidence 4444445555555555554332 355555555555554433 3445555555555555444332
Q ss_pred CCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc--cccCCccCCeEeccCC-cCccC
Q 014200 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQN-RILSI 222 (429)
Q Consensus 146 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~-~~~~~ 222 (429)
+..+..+++|++|++++|.+..++...+..+++|++|++++|.++.++. .+..+++|+.|++++| .+..+
T Consensus 93 -------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 93 -------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred -------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 2234444555555555555555444444555555555555555555543 4556666777777666 34444
Q ss_pred -CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh--ccccCEEEccCCCCCCCCcc----c
Q 014200 223 -PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE----I 294 (429)
Q Consensus 223 -~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~l~l~~n~l~~l~~~----l 294 (429)
+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+..++.... ..+|++|++++|.+++++.. .
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 34566677777777777766654 5566666677777776666655544322 23466666666655553211 1
Q ss_pred cCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCCh
Q 014200 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374 (429)
Q Consensus 295 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~ 374 (429)
..++.++.++++ .+.++++.+..+|.
T Consensus 246 ~~~~~l~~l~L~------------------------------------------------------~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 246 ETNSLIKKFTFR------------------------------------------------------NVKITDESLFQVMK 271 (353)
T ss_dssp -CCCCCCEEEEE------------------------------------------------------SCBCCHHHHHHHHH
T ss_pred cccchhhccccc------------------------------------------------------cccccCcchhhhHH
Confidence 112233333333 33333444445677
Q ss_pred hhhccCCCcEEeCCCCccccCChhh-cccccceeeccccCCCccccc
Q 014200 375 EIWEAGEITKLDLSRNSIQELPPEL-SSCASLQVKFSDLVTNKESCI 420 (429)
Q Consensus 375 ~~~~~~~L~~L~ls~n~i~~~~~~l-~~l~~L~~L~~~l~~n~i~~i 420 (429)
.+..+++|++|++++|+++.+|..+ ..+++|++|+ +++|++++-
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~--L~~N~~~~~ 316 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW--LHTNPWDCS 316 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCBCCC
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE--eeCCCccCc
Confidence 7778888888888888888877764 7788888888 888888873
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.6e-27 Score=215.84 Aligned_cols=243 Identities=24% Similarity=0.339 Sum_probs=173.0
Q ss_pred CCCEEEcCCCccc---cCCccccccCCCcEEEccC-CcccccChhhhhcccccceeecCCccCC-cCCccccCCccCCeE
Q 014200 138 NLSDFKASNNCIT---SLPEDLADCSKMSKLDVEG-NKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRL 212 (429)
Q Consensus 138 ~L~~L~l~~~~~~---~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L 212 (429)
++++|+++++.+. .+|..+..+++|++|++++ |.+....+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3445555555444 2445555555555555552 4444333333555566666666666664 455566667777777
Q ss_pred eccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCC-CCCEEECCCCcCcc-ccchhhccccCEEEccCCCCC
Q 014200 213 DLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKE-YCVEACQLRLSVLDLSNNSLS 288 (429)
Q Consensus 213 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~-~L~~L~l~~n~l~~-~~~~~~~~~L~~l~l~~n~l~ 288 (429)
++++|.+. .+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+++ ++.......|++|++++|.++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence 77777776 55667777778888888888777 6677777776 78888888887773 333333444888888888887
Q ss_pred C-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCC
Q 014200 289 G-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM 367 (429)
Q Consensus 289 ~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 367 (429)
+ .+..+..+++|+.|++++|.++..... + ...++|++|++++|
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-----------------------------------~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-----------------------------------GLSKNLNGLDLRNN 254 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-C-----------------------------------CCCTTCCEEECCSS
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-c-----------------------------------cccCCCCEEECcCC
Confidence 6 566788999999999999988643222 1 12358899999999
Q ss_pred ccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200 368 NLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 368 ~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
.++ .+|..+..+++|++|++++|++++ +|+. ..+++|+.++ +++|+.-+
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~--l~~N~~lc 305 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA--YANNKCLC 305 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG--TCSSSEEE
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHH--hcCCCCcc
Confidence 999 899999999999999999999997 8876 8999999999 99999444
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.2e-28 Score=246.91 Aligned_cols=410 Identities=14% Similarity=0.082 Sum_probs=235.8
Q ss_pred hHHHHHhhhcCeeeccCCCC----ccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc-cchhccC-CCC-CCEEE
Q 014200 2 DRILKAARTSGSLNLSNRSL----RDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDLRN-LPL-LTVLN 74 (429)
Q Consensus 2 ~~~~~~~~~l~~L~l~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~-~~~-L~~L~ 74 (429)
+.++..++.+++|+++++.- ..+|...-. +..-.-......+++|++|+++++.++. .+..+.. +++ |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG-YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCC-BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccc-cchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 35677778888888877431 122211000 0000000001136778888888776662 2223333 344 88888
Q ss_pred CCCCC-CC--CcchhhhCCCCCcEeecCCCcCccC-----CccccCCCCcCEEecCCCCCC-----cCCccccCCCCCCE
Q 014200 75 VSHNK-LS--ELPAAIGELHMLKSLDVSFNSIMKI-----PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSD 141 (429)
Q Consensus 75 l~~~~-i~--~~~~~l~~l~~L~~L~l~~~~i~~l-----~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~ 141 (429)
+++|. +. .++....++++|++|++++|.+... +.....+++|++|+++++.+. .++..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 87775 22 2233345778888888888765422 223456778888888777765 22334456778888
Q ss_pred EEcCCCccccCCccccccCCCcEEEccCCccc---ccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (429)
Q Consensus 142 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 218 (429)
|++++|.+..++..+..+++|+.++++..... ......+..+++|+.+.++++....+|..+..+++|++|++++|.
T Consensus 225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 88888777776666777778888777642111 001112445566777777665555566666667777777777776
Q ss_pred Ccc--CCccccccCCCcEEEcCCCCCC--ccChhhcCCCCCCEEECCC-----------CcCccccch---hhccccCEE
Q 014200 219 ILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHS-----------NQLKEYCVE---ACQLRLSVL 280 (429)
Q Consensus 219 ~~~--~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~---~~~~~L~~l 280 (429)
++. +...+..+++|++|+++ +.++ .++.....+++|++|++++ +.++..... ...++|++|
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 542 12334667777777776 3333 2333345667777777772 344422111 123457777
Q ss_pred EccCCCCCC-CCcccc-CCCCCCEEEcc----CCCCCCccccccCCCcHHHHHHHHhcCCCCCccc-ccCChhhHHhhhh
Q 014200 281 DLSNNSLSG-LPPEIG-KMTTLRKLLLT----GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMAT 353 (429)
Q Consensus 281 ~l~~n~l~~-l~~~l~-~~~~L~~L~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 353 (429)
++..+.+++ .+..+. .+++|+.|+++ .+.+++.+.. ...+..+.. ...+....++. .............
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~---~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD---NGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH---HHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH---HHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHH
Confidence 776666665 222233 36677777775 3344332210 001111111 11111111111 1112233333344
Q ss_pred ccccccccccccCCccc--cCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeeccccCCCcccc
Q 014200 354 RLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 354 ~~~~~L~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
..+++|+.|++++|+++ .++..+..+++|++|+|++|.+++ ++.....+++|++|+ +++|++++
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--ls~n~it~ 527 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW--VQGYRASM 527 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE--EESCBCCT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE--CcCCcCCH
Confidence 45678999999999988 456666789999999999999986 666667899999999 99999987
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.2e-27 Score=214.97 Aligned_cols=244 Identities=27% Similarity=0.353 Sum_probs=210.7
Q ss_pred CCccEEEcCCCCCC---ccchhccCCCCCCEEECCC-CCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCE
Q 014200 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (429)
Q Consensus 45 ~~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~-~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~ 118 (429)
.++++|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46999999999988 4788899999999999995 7766 67889999999999999999988 77888999999999
Q ss_pred EecCCCCCC-cCCccccCCCCCCEEEcCCCccc-cCCccccccC-CCcEEEccCCcccccChhhhhcccccceeecCCcc
Q 014200 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (429)
Q Consensus 119 L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (429)
|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+....+..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999988 67888999999999999999998 7888888887 999999999998865555577776 9999999999
Q ss_pred CCc-CCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCcc-ccchh
Q 014200 196 LNG-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEA 272 (429)
Q Consensus 196 l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 272 (429)
++. .|..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++ ++...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 974 567788999999999999999866666888999999999999998 778899999999999999999984 44443
Q ss_pred hccccCEEEccCCC-CCC
Q 014200 273 CQLRLSVLDLSNNS-LSG 289 (429)
Q Consensus 273 ~~~~L~~l~l~~n~-l~~ 289 (429)
...+|+.+++++|. +.+
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 34459999999986 444
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-26 Score=211.74 Aligned_cols=196 Identities=21% Similarity=0.273 Sum_probs=139.7
Q ss_pred CEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccC--hhhhhcccccceeecCC
Q 014200 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS--NNLIASWTMLTELIASK 193 (429)
Q Consensus 117 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~ 193 (429)
+.++++++.++.+|..+. +++++|++++|.++.++.. +..+++|+.|++++|.+...+ ...+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467888888888887553 5888999999888877654 678888999999888877543 23355678888888888
Q ss_pred ccCCcCCccccCCccCCeEeccCCcCccCC--ccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCcc--c
Q 014200 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE--Y 268 (429)
Q Consensus 194 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~--~ 268 (429)
|.+..++..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.. +..+..+++|++|++++|.+.+ +
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 888777777777888888888888877665 3677778888888888877744 4556777788888888777664 2
Q ss_pred cchhh-ccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCcc
Q 014200 269 CVEAC-QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLR 314 (429)
Q Consensus 269 ~~~~~-~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~ 314 (429)
+.... ..+|++|++++|.++++ +..+..+++|+.|++++|.+++++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 22221 22467777777766664 455666666666666666665543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=215.20 Aligned_cols=266 Identities=20% Similarity=0.231 Sum_probs=167.3
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEec
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC 121 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l 121 (429)
|+.....+.+++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+..++ ..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3444445556666666655433 356666666666665544 5566666666666666665442 34556666666666
Q ss_pred CCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCc--cccccCCCcEEEccCC-cccccChhhhhcccccceeecCCccCC
Q 014200 122 SSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLN 197 (429)
Q Consensus 122 ~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~ 197 (429)
++|++..++.. +..+++|++|++++|.++.++. .+..+++|+.|++++| .+..++...+..+++|+++++++|.++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 66666655543 5556666666666666665554 4556666666666666 355555555666667777777777665
Q ss_pred cC-CccccCCccCCeEeccCCcCccCCcc-ccccCCCcEEEcCCCCCCccCh----hhcCCCCCCEEECCCCcCcc----
Q 014200 198 GM-PETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPA----ELGKLSKLGTLDLHSNQLKE---- 267 (429)
Q Consensus 198 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~n~l~~---- 267 (429)
.. |..+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++. .......++.+++.++.+.+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 44 55666677777777777777655543 3446777777777777765431 12345667777777777664
Q ss_pred -ccchh-hccccCEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCC
Q 014200 268 -YCVEA-CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR 311 (429)
Q Consensus 268 -~~~~~-~~~~L~~l~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~i~ 311 (429)
++... ...+|++|++++|.++.+|.. +.++++|+.|++++|++.
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 22221 123588888888888888776 488999999999999874
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=216.83 Aligned_cols=247 Identities=24% Similarity=0.337 Sum_probs=145.9
Q ss_pred CEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCcc
Q 014200 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (429)
Q Consensus 117 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (429)
+.++..+..+..+|..+. ++++.|++++|.++.++ ..|..+++|+.|++++|.+..++...+.++++|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 445555555555555442 45566666666655432 445666666666666666666665556666666666666666
Q ss_pred CCcCCc-cccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCC-CCCccCh-hhcCCCCCCEEECCCCcCccccch
Q 014200 196 LNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN-ALSALPA-ELGKLSKLGTLDLHSNQLKEYCVE 271 (429)
Q Consensus 196 l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 271 (429)
++.++. .+..+++|+.|++++|.+..++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence 655543 4556666666666666666554 35566666666666663 4444433 456666666666666666555433
Q ss_pred hhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHh
Q 014200 272 ACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (429)
Q Consensus 272 ~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (429)
....+|++|++++|.++++ +..+.++++|+.|
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L----------------------------------------------- 236 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL----------------------------------------------- 236 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE-----------------------------------------------
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEE-----------------------------------------------
Confidence 3333355555555554443 3344444445444
Q ss_pred hhhccccccccccccCCccccC-ChhhhccCCCcEEeCCCCccccCC-hhhcccccceeeccccCCCccccccccccccc
Q 014200 351 MATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 351 ~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
++++|+++.+ +..+..+++|++|+|++|+++++| ..+..+++|++|+ +++|++.| +|-+.|.
T Consensus 237 ------------~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~Np~~C--dC~l~~l 300 (440)
T 3zyj_A 237 ------------WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH--LHHNPWNC--NCDILWL 300 (440)
T ss_dssp ------------ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE--CCSSCEEC--SSTTHHH
T ss_pred ------------ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE--cCCCCccC--CCCchHH
Confidence 4444444433 334556777888888888887744 4456778888888 88888877 6766663
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5.3e-26 Score=208.38 Aligned_cols=241 Identities=23% Similarity=0.291 Sum_probs=145.5
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchh-ccCCCCCCEEECCCCCCCCc---chhh
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL---PAAI 87 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~i~~~---~~~l 87 (429)
+.+++++++++++|...+ +++++|+++++.++.++.. |.++++|++|++++|.++.+ +..+
T Consensus 10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 467777777777776553 3477888888877777764 67778888888888777644 4566
Q ss_pred hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCcccc-CCccccccCCCcE
Q 014200 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITS-LPEDLADCSKMSK 164 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~L~~ 164 (429)
..+++|++|++++|.+..+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+..+..+++|+.
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 67777888888777777777667777777777777777665543 45666666666666666653 2344555566666
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~ 243 (429)
|++++|.+... ..|..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++
T Consensus 155 L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 155 LKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp EECTTCEEGGG----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCccccc----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 66666655430 1233444445555555555555543 344455555555555555555
Q ss_pred ccCh-hhcCCCCCCEEECCCCcCccccchhh---ccccCEEEccCCCCCC
Q 014200 244 ALPA-ELGKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLSNNSLSG 289 (429)
Q Consensus 244 ~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~l~l~~n~l~~ 289 (429)
.++. .+..+++|+.|++++|.+.+...... +.+|++|++++|.++.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 4432 34555555555555555554332211 1245556665555543
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.3e-26 Score=209.08 Aligned_cols=223 Identities=21% Similarity=0.273 Sum_probs=179.8
Q ss_pred CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC
Q 014200 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~ 124 (429)
.++++|+++++.++.+|..+.++++|++|++++|.++.+|..+.++++|++|++++|.+..+|..+.++++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 57888888888888888878888888888888888888888888888888888888888888888888888888888875
Q ss_pred CC-CcCCcccc---------CCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCc
Q 014200 125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (429)
Q Consensus 125 ~l-~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (429)
.+ ..+|..+. .+++|++|++++|.++.+|..+..+++|+.|++++|.+..++.. +..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence 44 35665544 37888888888888888888888888888888888888877664 778888888888887
Q ss_pred cC-CcCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccc
Q 014200 195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY 268 (429)
Q Consensus 195 ~l-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~ 268 (429)
.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++++.+++..+.+..+
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 66 456777888888888888887655 66777888888888888887554 6788888888888888887765543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3e-25 Score=214.58 Aligned_cols=248 Identities=22% Similarity=0.314 Sum_probs=136.4
Q ss_pred CEEecCCCCCCcCCccccCCCCCCEEEcCCCccccC-CccccccCCCcEEEccCCcccccChhhhhcccccceeecCCcc
Q 014200 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (429)
Q Consensus 117 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (429)
..++..+..+..+|..+. +++++|++++|.++.+ +..|..+++|+.|++++|.+..++...+.++++|++|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344444444555544332 3455555555555533 3345555555555555555555554445555555555555555
Q ss_pred CCcCCc-cccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCC-CCCccCh-hhcCCCCCCEEECCCCcCccccch
Q 014200 196 LNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN-ALSALPA-ELGKLSKLGTLDLHSNQLKEYCVE 271 (429)
Q Consensus 196 l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 271 (429)
++.++. .+..+++|+.|++++|.+..++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-
Confidence 554432 2445555566666655555443 24555566666666553 4444432 34555555555555555554433
Q ss_pred hhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhh
Q 014200 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (429)
Q Consensus 272 ~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (429)
+..+++|+.|++++|.+++++...|.+
T Consensus 214 ----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------- 240 (452)
T 3zyi_A 214 ----------------------LTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------- 240 (452)
T ss_dssp ----------------------CTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------
T ss_pred ----------------------ccccccccEEECcCCcCcccCcccccC-------------------------------
Confidence 344445555555555554433222221
Q ss_pred hhccccccccccccCCccccC-ChhhhccCCCcEEeCCCCccccCC-hhhcccccceeeccccCCCccccccccccccc
Q 014200 352 ATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 352 ~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
.++|+.|++++|.++.+ +..+..+++|++|+|++|+++++| ..+..+++|++|+ +++|++.| +|-+.|.
T Consensus 241 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~Np~~C--dC~~~~l 311 (452)
T 3zyi_A 241 ----LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH--LHHNPWNC--DCDILWL 311 (452)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE--CCSSCEEC--STTTHHH
T ss_pred ----ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE--ccCCCcCC--CCCchHH
Confidence 13455555555555533 445567788888888888888744 4466788888888 88888888 6666663
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.8e-26 Score=208.53 Aligned_cols=224 Identities=21% Similarity=0.322 Sum_probs=200.4
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~ 88 (429)
..++.|++++++++.+|..++. +++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 7899999999999999887654 678999999999999999999999999999999999999999999
Q ss_pred CCCCCcEeecCCCc-CccCCcccc---------CCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccc
Q 014200 89 ELHMLKSLDVSFNS-IMKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (429)
Q Consensus 89 ~l~~L~~L~l~~~~-i~~l~~~~~---------~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 158 (429)
++++|++|++++|. ...+|..+. ++++|++|++++|++..+|..+..+++|++|++++|.++.++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 99999999999974 456776654 49999999999999999999999999999999999999999989999
Q ss_pred cCCCcEEEccCCcccccChhhhhcccccceeecCCccC-CcCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEE
Q 014200 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY 236 (429)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~ 236 (429)
+++|+.|++++|.+....+..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++++.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999887766556688999999999999876 567888999999999999998765 7899999999999999
Q ss_pred cCCCCCCcc
Q 014200 237 MGNNALSAL 245 (429)
Q Consensus 237 l~~n~i~~~ 245 (429)
+..+.+..+
T Consensus 308 l~~~~~~~l 316 (328)
T 4fcg_A 308 VPPHLQAQL 316 (328)
T ss_dssp CCGGGSCC-
T ss_pred CCHHHHHHH
Confidence 987765543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.8e-25 Score=199.33 Aligned_cols=221 Identities=28% Similarity=0.359 Sum_probs=127.7
Q ss_pred CccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCc-CccC-CccccCCCCcCEEec
Q 014200 46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDC 121 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~-i~~l-~~~~~~~~~L~~L~l 121 (429)
++++|+++++.++.++. .|..+++|++|++++|.++.+ +..+.++++|++|++++|. +..+ +..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 35555555555555443 355555555555555555544 3345555555555555553 4444 333444555555555
Q ss_pred CCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc
Q 014200 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (429)
Q Consensus 122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 201 (429)
++|.+..++ +..+..+++|++|++++|.+..++...+..+++|++|++++|.++.++.
T Consensus 113 ~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 113 DRCGLQELG----------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCCcCCEEC----------------------HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 555544332 2334444555555555555554444444555555555555555555443
Q ss_pred -cccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccCh-hhcCCCCCCEEECCCCcCccccchh-hcccc
Q 014200 202 -TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEA-CQLRL 277 (429)
Q Consensus 202 -~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L 277 (429)
.+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+...+... ....+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 356677778888888877755 6677788888888888888887764 4788888889999888876433322 11124
Q ss_pred CEEEccCCCCC
Q 014200 278 SVLDLSNNSLS 288 (429)
Q Consensus 278 ~~l~l~~n~l~ 288 (429)
+.+....+.+.
T Consensus 251 ~~~~~~~~~~~ 261 (285)
T 1ozn_A 251 QKFRGSSSEVP 261 (285)
T ss_dssp HHCCSEECCCB
T ss_pred HhcccccCccc
Confidence 44444444443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=208.77 Aligned_cols=239 Identities=24% Similarity=0.356 Sum_probs=140.8
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcc-hhhh
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~-~~l~ 88 (429)
.+.+++++.+++.+|..++. +++.|++++|.++.++ ..|.++++|++|++++|.+..++ .+|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~---------------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIST---------------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCT---------------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCEEEeCCCCcCcCCCCCCC---------------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 34566666666666655432 3666666666666554 34666666666666666666554 3566
Q ss_pred CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCC-ccccCCc-cccccCCCcE
Q 014200 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~ 164 (429)
++++|++|++++|.++.++. .+..+++|++|++++|++..++. .+..+++|++|+++++ .+..++. .+..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 66666666666666665544 35666666666666666665543 4556666666666653 3333332 3555666666
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCC
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i 242 (429)
|++++|.+..++. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +.++..+++|++|++++|.+
T Consensus 190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 6666666665543 45556666666666666544 44555566666666666666544 34455566666666666666
Q ss_pred CccCh-hhcCCCCCCEEECCCCcCc
Q 014200 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 243 ~~~~~-~~~~~~~L~~L~l~~n~l~ 266 (429)
+.++. .+..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 65533 3455566666666666554
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.4e-25 Score=200.88 Aligned_cols=200 Identities=23% Similarity=0.334 Sum_probs=152.2
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCC-CCCc-ch
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PA 85 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~-i~~~-~~ 85 (429)
++++.|++++++++.+++..| ..+++|++|++++|.++.+ +..|..+++|++|++++|. ++.+ +.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF------------RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCceEEEeeCCcCCccCHHHc------------ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 355566666666555555444 4578899999999999987 5579999999999999997 8877 56
Q ss_pred hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCCc-cccccCCC
Q 014200 86 AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKM 162 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L 162 (429)
.+..+++|++|++++|.+..+ +..+.++++|++|++++|++..++. .+..+++|++|++++|.++.++. .+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 899999999999999999877 5568889999999999999997765 46788888999988888886654 47777888
Q ss_pred cEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-cccCCccCCeEeccCCcCc
Q 014200 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL 220 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~ 220 (429)
+.|++++|.+..+.+..+..+++|++|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888888887776655556666666666666666655543 3555556666666665544
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.3e-24 Score=208.31 Aligned_cols=238 Identities=24% Similarity=0.345 Sum_probs=140.3
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcc-hhhhC
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGE 89 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~-~~l~~ 89 (429)
+.+++++.+++.+|..++ +++++|++++|.++.++ ..|.++++|+.|++++|.++.++ ..|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp CEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 456666666666665443 23666666666666553 34666666666666666666553 35666
Q ss_pred CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCC-ccccCCc-cccccCCCcEE
Q 014200 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL 165 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~L 165 (429)
+++|++|++++|.+..++.. +.++++|++|++++|++..++. .+..+++|++|+++++ .+..++. .+..+++|+.|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 66666666666666655443 5556666666666666665543 4556666666666653 3433332 35556666666
Q ss_pred EccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC
Q 014200 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~ 243 (429)
++++|.+..++. +..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++
T Consensus 202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 666666655542 45556666666666666544 44455666666666666666544 344555666666666666666
Q ss_pred ccCh-hhcCCCCCCEEECCCCcCc
Q 014200 244 ALPA-ELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 244 ~~~~-~~~~~~~L~~L~l~~n~l~ 266 (429)
.++. .+..+++|+.|++++|.+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 5543 3455666666666666554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.8e-25 Score=203.55 Aligned_cols=237 Identities=22% Similarity=0.271 Sum_probs=165.2
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcchhhh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIG 88 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~l~ 88 (429)
.++..+++.+.+..++...+.. +++|++|++++|.++.++ ..|..+++|++|++++|.++..++ +.
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~ 77 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE 77 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ET
T ss_pred ceeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hh
Confidence 3455566666665555555543 556888888888888665 467888888888888888775544 77
Q ss_pred CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEc
Q 014200 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l 167 (429)
.+++|++|++++|.+..++. .++|++|++++|.+..++.. .+++|++|++++|.++.++ ..+..+++|+.|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred hcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 78888888888887776543 37788888888877765432 3567888888888777553 35666777888888
Q ss_pred cCCcccccChhhh-hcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccC
Q 014200 168 EGNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246 (429)
Q Consensus 168 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 246 (429)
++|.+..++...+ ..++.|++|++++|.++.++. ...+++|+.|++++|.+..++..+..+++|++|++++|.++.+|
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence 8777776554433 356777777777777766543 23466777777777777766666777777777777777777776
Q ss_pred hhhcCCCCCCEEECCCCcCc
Q 014200 247 AELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 247 ~~~~~~~~L~~L~l~~n~l~ 266 (429)
..+..+++|+.|++++|.+.
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCB
T ss_pred hHhhcCCCCCEEEccCCCcc
Confidence 66667777777777777665
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5.1e-26 Score=208.91 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=134.6
Q ss_pred hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCC--ccchhcc-------CCCCCCEEECCCC
Q 014200 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLR-------NLPLLTVLNVSHN 78 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~-------~~~~L~~L~l~~~ 78 (429)
.++++.+++++|.+ .+|..++.. +++|+++++.++ .++..+. ++++|++|++++|
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~---------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI---------------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH---------------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred CCCceeEeeccccc-ccHHHHHHH---------------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 34566666666666 566655442 555566665554 2333332 5666666666666
Q ss_pred CCC-Ccchhh--hCCCCCcEeecCCCcCccCCccccCC-----CCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCcc
Q 014200 79 KLS-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCI 149 (429)
Q Consensus 79 ~i~-~~~~~l--~~l~~L~~L~l~~~~i~~l~~~~~~~-----~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~ 149 (429)
.++ .+|..+ ..+++|++|++++|.+..+|..+..+ ++|++|++++|++..++ ..+..+++|++|++++|.+
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 665 345443 66666666666666666555555444 66666666666666554 4566666666666666654
Q ss_pred cc---CCccc--cccCCCcEEEccCCccccc---ChhhhhcccccceeecCCccCCcCC--ccccCCccCCeEeccCCcC
Q 014200 150 TS---LPEDL--ADCSKMSKLDVEGNKLTVL---SNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRI 219 (429)
Q Consensus 150 ~~---~~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~ 219 (429)
.. ++..+ ..+++|++|++++|.+..+ +...+..+++|++|++++|.++..+ ..+..+++|+.|++++|.+
T Consensus 186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 32 12222 5556666666666666532 2222334456666666666655432 2334455566666666655
Q ss_pred ccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCc
Q 014200 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 220 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 266 (429)
+.+|..+. ++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus 266 ~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 266 KQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred Chhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 55554443 555555555555555543 555555555555555544
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.8e-26 Score=231.10 Aligned_cols=401 Identities=15% Similarity=0.135 Sum_probs=241.5
Q ss_pred HHHHHhhhcCeeeccCCC-CccCC---hhh----hhhhccccCCCcccccCCccEEEcCCCCCCcc-chhcc-CCCCCCE
Q 014200 3 RILKAARTSGSLNLSNRS-LRDVP---NEV----YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLR-NLPLLTV 72 (429)
Q Consensus 3 ~~~~~~~~l~~L~l~~~~-l~~~~---~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~-~~~~L~~ 72 (429)
.++..++.++.|+++++. +.++. ... ...+. .-...+++|++|+++++.++.. +..+. .+++|++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~-----~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE-----AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHH-----HHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHH-----HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 457778889999999865 22221 000 00000 0011477899999999887732 23343 6899999
Q ss_pred EECCCC-CCCC--cchhhhCCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCC--CC--cCCccccCCCCCC
Q 014200 73 LNVSHN-KLSE--LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQ--LK--ELPSSLGRCLNLS 140 (429)
Q Consensus 73 L~l~~~-~i~~--~~~~l~~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~--l~--~~~~~~~~~~~L~ 140 (429)
|++++| .++. ++..+.++++|++|++++|.+.. ++.....+++|++|+++++. +. .+......+++|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999988 4553 45556689999999999987663 23334477899999998886 22 1222234578999
Q ss_pred EEEcCCC-ccccCCccccccCCCcEEEccCCc-------ccccChhhhhccccccee-ecCCccCCcCCccccCCccCCe
Q 014200 141 DFKASNN-CITSLPEDLADCSKMSKLDVEGNK-------LTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIR 211 (429)
Q Consensus 141 ~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~l~~~~~~~~~~~~L~~ 211 (429)
+|++++| .+..++..+..+++|+.+++..+. +..++. .+.++++|+.+ .+.+.....++.....+++|+.
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence 9999988 444566667788889999865442 222222 35666667766 3433333334444445677778
Q ss_pred EeccCCcCcc--CCccccccCCCcEEEcCCCCCC--ccChhhcCCCCCCEEECCC---------CcCccccch---hhcc
Q 014200 212 LDLHQNRILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHS---------NQLKEYCVE---ACQL 275 (429)
Q Consensus 212 L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~---~~~~ 275 (429)
|++++|.++. +...+..+++|++|++++| ++ .++.....+++|++|++.+ +.+++.... ...+
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 8887777552 2233456777777777776 33 2223334577777777732 334322111 1134
Q ss_pred ccCEEEccCCCCCC--CCccccCCCCCCEEEcc--C----CCCCCccccccCCCcHHHHHHH-HhcCCCCCcccccCChh
Q 014200 276 RLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLT--G----NPLRTLRSSLVNGPTPALLKYL-RSRLPENEDSEASTTKE 346 (429)
Q Consensus 276 ~L~~l~l~~n~l~~--l~~~l~~~~~L~~L~l~--~----~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 346 (429)
+|++|.+.++.+++ +......+++|+.|+++ + +.++..+ ....+... ........+........
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-------~~~~~~~l~~~~~~L~~L~L~~~l~~ 445 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-------LDIGFGAIVEHCKDLRRLSLSGLLTD 445 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC-------THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc-------hhhHHHHHHhhCCCccEEeecCcccH
Confidence 57777777777665 22222357777777777 3 3333221 11111111 11111112222222233
Q ss_pred hHHhhhhccccccccccccCCccc-cCChhh-hccCCCcEEeCCCCcccc--CChhhcccccceeeccccCCCcccc
Q 014200 347 DLITMATRLSVTSKELSLEGMNLS-AIPSEI-WEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 347 ~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~-~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
..........++|+.|++++|.++ ..+..+ ..+++|++|+|++|.+++ +......+++|++|+ +++|+++.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~--l~~~~~~~ 520 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW--MSSCSVSF 520 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE--EESSCCBH
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe--eeCCCCCH
Confidence 333333444678999999999987 223333 679999999999999976 444556689999999 99999854
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.9e-25 Score=223.55 Aligned_cols=385 Identities=14% Similarity=0.096 Sum_probs=191.4
Q ss_pred HHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCC-ccEEEcCCCC-CC--ccchhccCCCCCCEEECCCC
Q 014200 3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVD-LQKLILAHNN-IE--KLKEDLRNLPLLTVLNVSHN 78 (429)
Q Consensus 3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-i~--~l~~~~~~~~~L~~L~l~~~ 78 (429)
.+...+++|++|+++++.++......+... +++ |++|+++++. +. .++....++++|++|++++|
T Consensus 106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-----------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----------RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHH-----------HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred HHHhhCCCCCeEEeeccEecHHHHHHHHHh-----------ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc
Confidence 456688999999999987653322222211 222 6666666554 11 22222345666666666666
Q ss_pred CCCC-----cchhhhCCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCc
Q 014200 79 KLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148 (429)
Q Consensus 79 ~i~~-----~~~~l~~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 148 (429)
.+.. ++..+..+++|++|++++|.+.. ++..+.++++|++|++++|.+..++..+..+++|+++.++...
T Consensus 175 ~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCC
T ss_pred cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccc
Confidence 5432 22334556666666666665542 2223445666666666666555555555555666666654321
Q ss_pred cc----cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc--CCccccCCccCCeEeccCCcCc--
Q 014200 149 IT----SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRIL-- 220 (429)
Q Consensus 149 ~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~-- 220 (429)
.. .....+..+++|+.++++++....++. .+..+++|++|++++|.++. ++..+..+++|+.|++.+ .+.
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~ 332 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDR 332 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHH
T ss_pred cccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHH
Confidence 11 122334445555555555443222222 24445555555555555422 112234555555555552 222
Q ss_pred cCCccccccCCCcEEEcCC-----------CCCCc--cChhhcCCCCCCEEECCCCcCccccchhh---ccccCEEEcc-
Q 014200 221 SIPSSISGCCSLAEFYMGN-----------NALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS- 283 (429)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~-----------n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~l~l~- 283 (429)
.++.....+++|++|++++ +.++. ++.....+++|+.|++..+.+++...... .++|++|+++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 1222234455555555552 23331 22223445555555555555443221111 2235555554
Q ss_pred ---CCCCCCCC------ccccCCCCCCEEEccCCC--CCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhh
Q 014200 284 ---NNSLSGLP------PEIGKMTTLRKLLLTGNP--LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (429)
Q Consensus 284 ---~n~l~~l~------~~l~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (429)
.|.+++.| ..+.++++|+.|++++|. ++ +.....+......+....++... .........
T Consensus 413 ~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~--------~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~ 483 (592)
T 3ogk_B 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT--------DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF 483 (592)
T ss_dssp CSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC--------HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH
T ss_pred cCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc--------HHHHHHHHHhCccceEeeccCCC-CCHHHHHHH
Confidence 33444422 124445555555554332 11 11111111111112222222111 111122333
Q ss_pred hccccccccccccCCccc--cCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeec
Q 014200 353 TRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKF 409 (429)
Q Consensus 353 ~~~~~~L~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~ 409 (429)
...+++|+.|++++|.++ .++.....+++|++|++++|++++ +..-...+|.+....
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEE
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEE
Confidence 445679999999999987 356666789999999999999986 333334677776655
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.7e-26 Score=209.15 Aligned_cols=242 Identities=20% Similarity=0.205 Sum_probs=161.3
Q ss_pred CCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCc--cCCcccc-------CCCCcCEEecCCCCCC-cCCccc--
Q 014200 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL-- 133 (429)
Q Consensus 66 ~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~--~l~~~~~-------~~~~L~~L~l~~~~l~-~~~~~~-- 133 (429)
..++|+.+++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344555555555555 445443332 555555555553 2333333 4556666666666555 344443
Q ss_pred cCCCCCCEEEcCCCccccCCcccccc-----CCCcEEEccCCcccccChhhhhcccccceeecCCccCCc---CCccc--
Q 014200 134 GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI-- 203 (429)
Q Consensus 134 ~~~~~L~~L~l~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~-- 203 (429)
..+++|++|++++|.++..|..+..+ ++|++|++++|.+..+++..+..+++|++|++++|.+.. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 55566666666666665555444444 666666666666666665556666666666666666532 12222
Q ss_pred cCCccCCeEeccCCcCccCC----ccccccCCCcEEEcCCCCCCccC--hhhcCCCCCCEEECCCCcCccccchhhcccc
Q 014200 204 GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L 277 (429)
..+++|+.|++++|.+..++ ..+..+++|++|++++|.++..+ ..+..+++|+.|++++|.++.++.... .+|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L 276 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKL 276 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCc
Confidence 67788888888888887433 23456789999999999888654 446678899999999999998877655 679
Q ss_pred CEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (429)
Q Consensus 278 ~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~ 312 (429)
++|++++|+++++|. +..+++|+.|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999977 8899999999999999865
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-25 Score=205.91 Aligned_cols=240 Identities=18% Similarity=0.209 Sum_probs=207.8
Q ss_pred HHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC
Q 014200 3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE 82 (429)
Q Consensus 3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~ 82 (429)
.++..+++|++|++++|+++.+++..+.. +++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTT------------CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhC------------CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc
Confidence 45666789999999999999998877765 6789999999999987765 8999999999999999887
Q ss_pred cchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccC-Cccc-ccc
Q 014200 83 LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL-PEDL-ADC 159 (429)
Q Consensus 83 ~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~l-~~~ 159 (429)
++ ..++|++|++++|.+..++.. .+++|++|++++|++..++. .+..+++|++|++++|.+..+ +..+ ..+
T Consensus 95 l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 95 LL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp EE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred cc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 65 448999999999999876543 47899999999999997754 678889999999999999865 3344 468
Q ss_pred CCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCC
Q 014200 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239 (429)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 239 (429)
++|++|++++|.+..++. ...+++|++|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++
T Consensus 169 ~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred CcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 999999999999988754 345899999999999999998889999999999999999999999999999999999999
Q ss_pred CCCC--ccChhhcCCCCCCEEECCCC
Q 014200 240 NALS--ALPAELGKLSKLGTLDLHSN 263 (429)
Q Consensus 240 n~i~--~~~~~~~~~~~L~~L~l~~n 263 (429)
|.++ .++.++..+++|+.+++.++
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCccCcCHHHHHhccccceEEECCCc
Confidence 9998 56778888888888877643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.7e-24 Score=208.17 Aligned_cols=230 Identities=22% Similarity=0.205 Sum_probs=139.7
Q ss_pred CCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCC
Q 014200 92 MLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (429)
Q Consensus 92 ~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 170 (429)
+|++|++++|.+..++ ..+..+++|++|++++|.+...+. +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-------------------- 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-------------------- 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE--------------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC--------------------
Confidence 5666666666555443 345555566666665555553322 444444444444444444
Q ss_pred cccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCcc-Chh
Q 014200 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAE 248 (429)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~ 248 (429)
.++. .+.|++|++++|.+..++. ..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.. |..
T Consensus 94 ---~l~~-----~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 94 ---ELLV-----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp ---EEEE-----CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ---CCCC-----CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 3221 1344444444444443322 2345677777777777655 44667777777777777777753 444
Q ss_pred hc-CCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHH
Q 014200 249 LG-KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (429)
Q Consensus 249 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~ 327 (429)
+. .+++|+.|++++|.+++++......+|+.|++++|.++++|+.+..+++|+.|++++|
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N------------------- 224 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN------------------- 224 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-------------------
T ss_pred HhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-------------------
Confidence 43 6777777777777777665444444566666666666665555555555555555555
Q ss_pred HHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccc-c-CChhhcccccc
Q 014200 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-E-LPPELSSCASL 405 (429)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~-~-~~~~l~~l~~L 405 (429)
.++.+|..+..+++|+.|++++|.+. + +|..+..++.|
T Consensus 225 ----------------------------------------~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 225 ----------------------------------------KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp ----------------------------------------CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred ----------------------------------------cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 44456666667788888899888887 3 77888888888
Q ss_pred eeeccccC
Q 014200 406 QVKFSDLV 413 (429)
Q Consensus 406 ~~L~~~l~ 413 (429)
+.++ ++
T Consensus 265 ~~l~--~~ 270 (487)
T 3oja_A 265 QTVA--KQ 270 (487)
T ss_dssp HHHH--HH
T ss_pred cEEe--cc
Confidence 8888 75
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1e-22 Score=183.63 Aligned_cols=222 Identities=22% Similarity=0.316 Sum_probs=165.0
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhC
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~ 89 (429)
...++++.++..+|..+. +++++|++++|.++.++. .|.++++|++|++++|.++.++. .+.+
T Consensus 10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 357788888888887653 358999999999998776 68889999999999999887755 7889
Q ss_pred CCCCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCcccc--CCccccccCCCcEE
Q 014200 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L 165 (429)
+++|++|++++|.+..++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.++. +|..+..+++|+.|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999888665 568889999999999998887754 57788899999999988875 57778888888888
Q ss_pred EccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc
Q 014200 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (429)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 245 (429)
++++|.+..++...+..++.++.+.+ .+++++|.+..++.......+|++|++++|.++.+
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l-------------------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNL-------------------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 215 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCE-------------------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC
T ss_pred ECCCCCCCcCCHHHhhhhhhccccce-------------------eeecCCCcccccCccccCCCcccEEECCCCceeec
Confidence 88888888776655555555541110 45555555554443333344666666666666666
Q ss_pred Chh-hcCCCCCCEEECCCCcCcc
Q 014200 246 PAE-LGKLSKLGTLDLHSNQLKE 267 (429)
Q Consensus 246 ~~~-~~~~~~L~~L~l~~n~l~~ 267 (429)
+.. +..+++|+.|++++|.+..
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHhHhcccccccEEEccCCcccc
Confidence 443 4666777777777776664
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-23 Score=201.44 Aligned_cols=215 Identities=23% Similarity=0.286 Sum_probs=168.3
Q ss_pred cCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecC
Q 014200 44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~ 122 (429)
+++|++|++++|.++.++ ..|..+++|++|++++|.++..++ +..+++|++|++++|.+..++. .++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 557889999988888765 468888899999999888875544 7888889999998888876654 3788888888
Q ss_pred CCCCCcCCccccCCCCCCEEEcCCCccccC-CccccccCCCcEEEccCCcccccChhhhh-cccccceeecCCccCCcCC
Q 014200 123 SNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIA-SWTMLTELIASKNLLNGMP 200 (429)
Q Consensus 123 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~ 200 (429)
+|.+..++.. .+++|+.|++++|.++.+ +..+..+++|+.|++++|.+...++..+. .++.|++|++++|.++.++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 8888866542 457888888888888855 45677788888888888888775554444 6788888888888887664
Q ss_pred ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCc
Q 014200 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 266 (429)
. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 3 3357788888888888887777777888888888888888888777777888888888888776
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=3.1e-25 Score=222.12 Aligned_cols=388 Identities=15% Similarity=0.138 Sum_probs=218.4
Q ss_pred HHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCC-CCCc--cchhccCCCCCCEEECCCCC
Q 014200 3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-NIEK--LKEDLRNLPLLTVLNVSHNK 79 (429)
Q Consensus 3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~~~~L~~L~l~~~~ 79 (429)
.+...+++|++|+++++.++......+.. .+++|++|++++| .++. ++..+.++++|++|++++|.
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~-----------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAK-----------SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHH-----------HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHHHHHH-----------hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 45678889999999999865332222210 2678999999888 5553 55455678999999999988
Q ss_pred CCCc-----chhhhCCCCCcEeecCCCc--Cc--cCCccccCCCCcCEEecCCC-CCCcCCccccCCCCCCEEEcCCCc-
Q 014200 80 LSEL-----PAAIGELHMLKSLDVSFNS--IM--KIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSDFKASNNC- 148 (429)
Q Consensus 80 i~~~-----~~~l~~l~~L~~L~l~~~~--i~--~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~- 148 (429)
++.. +.....+++|++|++++|. +. .++..+..+++|++|++++| .+..++..+..+++|++|.+..+.
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence 6642 2233467899999998886 22 12222355789999999887 333555566677888888865442
Q ss_pred ------cccCCccccccCCCcEE-EccCCcccccChhhhhcccccceeecCCccCCc--CCccccCCccCCeEeccCCcC
Q 014200 149 ------ITSLPEDLADCSKMSKL-DVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI 219 (429)
Q Consensus 149 ------~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~ 219 (429)
+..++..+..+++|+.+ .+.......++. ....+++|++|++++|.++. +...+..+++|+.|++.+| +
T Consensus 248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~ 325 (594)
T 2p1m_B 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-I 325 (594)
T ss_dssp CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-G
T ss_pred ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-c
Confidence 22333345566666666 333222222221 13355666677766666432 2222445666666766665 2
Q ss_pred c--cCCccccccCCCcEEEcCC---------CCCCc--cChhhcCCCCCCEEECCCCcCccccchh---hccccCEEEcc
Q 014200 220 L--SIPSSISGCCSLAEFYMGN---------NALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEA---CQLRLSVLDLS 283 (429)
Q Consensus 220 ~--~~~~~~~~~~~L~~L~l~~---------n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~L~~l~l~ 283 (429)
. .++.....+++|++|++.+ +.++. +......+++|+.|.+..+.++...... ..++|++|+++
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 2 1122223466666666622 23331 1111234566666666666655322221 12346666666
Q ss_pred --C----CCCCCCC------ccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhh
Q 014200 284 --N----NSLSGLP------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (429)
Q Consensus 284 --~----n~l~~l~------~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (429)
+ +.+++.+ ..+..+++|+.|++++ .+++ .....+......+....++.... .......
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~--------~~~~~l~~~~~~L~~L~L~~~~i-~~~~~~~ 475 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD--------KVFEYIGTYAKKMEMLSVAFAGD-SDLGMHH 475 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH--------HHHHHHHHHCTTCCEEEEESCCS-SHHHHHH
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH--------HHHHHHHHhchhccEeeccCCCC-cHHHHHH
Confidence 2 3444322 1245566666666654 2221 11111111111222222222221 1222222
Q ss_pred hhccccccccccccCCcccc--CChhhhccCCCcEEeCCCCcccc-CChhh-cccccceeeccccCCC
Q 014200 352 ATRLSVTSKELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQE-LPPEL-SSCASLQVKFSDLVTN 415 (429)
Q Consensus 352 ~~~~~~~L~~l~l~~~~i~~--~~~~~~~~~~L~~L~ls~n~i~~-~~~~l-~~l~~L~~L~~~l~~n 415 (429)
....+++|+.|++++|.++. +......+++|++|++++|+++. -.+.+ ..+|.|+... +..+
T Consensus 476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~--~~~~ 541 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV--IDER 541 (594)
T ss_dssp HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE--ECSS
T ss_pred HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE--ecCC
Confidence 33446899999999999972 33344568999999999999865 33334 4677776665 5544
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.6e-22 Score=179.66 Aligned_cols=197 Identities=26% Similarity=0.329 Sum_probs=107.2
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~ 122 (429)
++++++++++++.++.+|..+. ++++.|++++|.++.++ ..+..+++|++|++++|.+..++.. ..+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 3445555555555555544332 34555555555554432 3445555555555555555444332 445555555555
Q ss_pred CCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc
Q 014200 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (429)
Q Consensus 123 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 201 (429)
+|++..+|..+..+++|++|++++|+++.++ ..+..+++|+.|++++|.+..++...+..+++|+.|++++|.++.+|.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 5555555554555555555555555555443 335555555566665555555555545555566666666666655543
Q ss_pred c-ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200 202 T-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 202 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 243 (429)
. +..+++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 2 34566666666666666666666666666666777666554
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1e-21 Score=177.87 Aligned_cols=199 Identities=23% Similarity=0.268 Sum_probs=93.1
Q ss_pred cCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEE
Q 014200 65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (429)
Q Consensus 65 ~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 143 (429)
.+++++++++++++.++.+|..+. +++++|++++|.+..+ +..+.++++|++|++++|.+..++.. ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 344445555555554444443321 3444555555544433 23344445555555555544444322 3444455555
Q ss_pred cCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-cccCCccCCeEeccCCcCccC
Q 014200 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI 222 (429)
Q Consensus 144 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~ 222 (429)
+++|.++.+|..+..+++|+.|++++|.++.+++..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 5555544444444444455555555554444444444444555555555554444432 233444455555555554444
Q ss_pred Cc-cccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCc
Q 014200 223 PS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 223 ~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 266 (429)
+. .+..+++|++|++++|.++.+|..+...++|+.+++++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 32 234444555555555555544444444444555555554443
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.8e-22 Score=181.86 Aligned_cols=195 Identities=22% Similarity=0.305 Sum_probs=111.4
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 123 (429)
+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 344666666666555554 45555666666666666555544 555666666666665555543 345555555555555
Q ss_pred CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (429)
Q Consensus 124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 203 (429)
|++..++. +..+++|++|++++|.++.+ +. +..+++|+.|++++|.++.++. +
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-----------------------~~--l~~l~~L~~L~l~~n~l~~~~~-l 169 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNI-----------------------SP--LAGLTNLQYLSIGNAQVSDLTP-L 169 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCC-----------------------GG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcC-----------------------cc--ccCCCCccEEEccCCcCCCChh-h
Confidence 55554432 44445555555555544433 32 3444445555555555544433 5
Q ss_pred cCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccc
Q 014200 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 270 (429)
..+++|+.|++++|.+..++. +..+++|++|++++|.++.+++ +..+++|+.|++++|.++..+.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 555666666666666665543 5666777777777777776653 6667777777777777665443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.5e-21 Score=175.89 Aligned_cols=218 Identities=22% Similarity=0.245 Sum_probs=154.2
Q ss_pred cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCC
Q 014200 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQ 125 (429)
Q Consensus 48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~ 125 (429)
.+++..+..+..+|..+. +++++|++++|.++.++. .+.++++|++|++++|.+..++. .+.++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 345666666777776553 468888888888887655 77788888888888887776654 56777788888887777
Q ss_pred CCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200 126 LKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (429)
Q Consensus 126 l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 203 (429)
+..++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+. +|..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------l~~~~ 145 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------------LPEYF 145 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----------------------CCGGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec----------------------Cchhh
Confidence 77554 445666666666666666654433 3455555555555555443321 34556
Q ss_pred cCCccCCeEeccCCcCccCC-ccccccCCCc----EEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhh--ccc
Q 014200 204 GSLSRLIRLDLHQNRILSIP-SSISGCCSLA----EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLR 276 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~ 276 (429)
..+++|+.|++++|.++.++ ..+..+++++ ++++++|.++.++.......+|+.|++++|.+++++...+ ..+
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 66777777777777777553 4566666666 8999999999887766666799999999999998877643 345
Q ss_pred cCEEEccCCCCCC
Q 014200 277 LSVLDLSNNSLSG 289 (429)
Q Consensus 277 L~~l~l~~n~l~~ 289 (429)
|+++++++|.++.
T Consensus 226 L~~L~l~~N~~~c 238 (276)
T 2z62_A 226 LQKIWLHTNPWDC 238 (276)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEEccCCcccc
Confidence 9999999998875
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.4e-21 Score=177.17 Aligned_cols=198 Identities=24% Similarity=0.325 Sum_probs=167.4
Q ss_pred HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~ 84 (429)
+..+++|+.|+++++.+.+++. +. .+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~--~~------------~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEG--VQ------------YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred HHHcCCcCEEEeeCCCccCchh--hh------------ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 4568899999999999998863 33 27889999999999999887 999999999999999999875
Q ss_pred hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (429)
Q Consensus 85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~ 164 (429)
.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|+.
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence 68899999999999999998865 8899999999999999998865 7888999999999999987765 788899999
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCc
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 224 (429)
|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.++..|.
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 9999998887664 6677778888888887776653 6677777777777777665543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.9e-21 Score=173.41 Aligned_cols=195 Identities=23% Similarity=0.355 Sum_probs=110.3
Q ss_pred ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN 124 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~ 124 (429)
.++++++++.++.+|..+. +++++|++++|.++.++. +|.++++|++|++++|.+..++.. +.++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555555554332 345555555555554443 455555555555555555554433 344555555555555
Q ss_pred CCCcCCc-cccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-
Q 014200 125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201 (429)
Q Consensus 125 ~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~- 201 (429)
.+..++. .+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++...+..+++|++|++++|.++.++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 5554443 2345555555555555555443 234555666666666666665555555566666666666666655543
Q ss_pred cccCCccCCeEeccCCcCccCCc-cccccCCCcEEEcCCCCCC
Q 014200 202 TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 202 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~ 243 (429)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 35566677777777777766543 4566777777777777654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.2e-20 Score=167.68 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=151.7
Q ss_pred CCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCC
Q 014200 69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASN 146 (429)
Q Consensus 69 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~ 146 (429)
+.+.++++++.++.+|..+. +++++|++++|.+..++. .+.++++|++|++++|.+..++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 57789999999888876543 678999999998887765 588889999999999988887764 46788899999988
Q ss_pred CccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc-ccCCccCCeEeccCCcCccCCc
Q 014200 147 NCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPS 224 (429)
Q Consensus 147 ~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 224 (429)
|.+..++. .+..+++|+.|++++|.+..++...+..+++|++|++++|.++.++.. +..+++|+.|++++|.+..++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 88887654 467788888888888888877776677778888888888877766543 5677778888887777776653
Q ss_pred -cccccCCCcEEEcCCCCCCccCh-hhcCCCCCCEEECCCCcCcc
Q 014200 225 -SISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKE 267 (429)
Q Consensus 225 -~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~ 267 (429)
.+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 46677777777777777776654 36667777777777776653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.3e-21 Score=172.32 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=92.4
Q ss_pred CCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCc-CccCCc-cccCCCCcCEEecCC-CCCCcCC-ccccCCCCCCEEE
Q 014200 69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK 143 (429)
Q Consensus 69 ~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~-i~~l~~-~~~~~~~L~~L~l~~-~~l~~~~-~~~~~~~~L~~L~ 143 (429)
++++|++++|.++.++. .|.++++|++|++++|. ++.++. .+.++++|++|++++ |++..++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444333 34444444444444443 443332 244444444444444 4444333 2334444444444
Q ss_pred cCCCccccCCccccccCCCc---EEEccCC-cccccChhhhhcccccc-eeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200 144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (429)
Q Consensus 144 l~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 218 (429)
+++|.++.+|. +..+++|+ .|++++| .+..++...+..+++|+ ++++++|.++.+|......++|+.|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 44444444443 44444444 5555555 55555544455555555 5555555555444333233555566666653
Q ss_pred -CccCC-cccccc-CCCcEEEcCCCCCCccChhhcCCCCCCEEECCCC
Q 014200 219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (429)
Q Consensus 219 -~~~~~-~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n 263 (429)
++.++ ..+..+ ++|++|++++|.++.+|.. .+++|+.|++.++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 55443 344555 5666666666666555443 4455555555543
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=4.4e-21 Score=188.20 Aligned_cols=217 Identities=24% Similarity=0.287 Sum_probs=148.0
Q ss_pred CCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCC
Q 014200 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (429)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 240 (429)
+++.|++++|.+..++... .++|++|++++|.++.+| ..+++|+.|++++|.++.+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 4555555555555444321 245566666666665555 345677777777777777666 443 7888888888
Q ss_pred CCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCC
Q 014200 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (429)
Q Consensus 241 ~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 320 (429)
.++.+|. .+++|+.|++++|.++.++. ...+|++|++++|.++++|. +. ++|+.|++++|.++.++. +.+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~ 200 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV 200 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC-
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH
Confidence 8877766 57788888888888887665 34568888888888888877 55 889999999999887775 221
Q ss_pred CcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc-CChhh
Q 014200 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPEL 399 (429)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l 399 (429)
. + ....+.|+.|++++|.|+.+|..++.+++|+.|+|++|.+++ +|..+
T Consensus 201 ~----L--------------------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 201 R----N--------------------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp -------------------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred h----h--------------------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 1 0 011235699999999999999999999999999999999998 88887
Q ss_pred cccccc-------eeeccccCCCcccc----ccccccccc
Q 014200 400 SSCASL-------QVKFSDLVTNKESC----ISGCYLYWN 428 (429)
Q Consensus 400 ~~l~~L-------~~L~~~l~~n~i~~----i~~~~~~~~ 428 (429)
..++.. -+++ ++++.+.. .++|...|.
T Consensus 251 ~~l~~~~~~~~~~~~~~--l~~~~~~~~~~p~~~~~~~Wl 288 (571)
T 3cvr_A 251 SQQTAQPDYHGPRIYFS--MSDGQQNTLHRPLADAVTAWF 288 (571)
T ss_dssp HHHHHSCC---CEEECC--C----------CCSHHHHTTC
T ss_pred HHhhcCccccCCeeEEe--ecccccccccccchhhHHHHh
Confidence 776542 1234 66654432 567888885
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=171.36 Aligned_cols=192 Identities=21% Similarity=0.310 Sum_probs=168.6
Q ss_pred CCccEEEcCCCCCCccch-hccCCCCCCEEECCCCC-CCCcch-hhhCCCCCcEeecCC-CcCccCC-ccccCCCCcCEE
Q 014200 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKF 119 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~-i~~~~~-~l~~l~~L~~L~l~~-~~i~~l~-~~~~~~~~L~~L 119 (429)
+++++|+++++.++.++. .|.++++|++|++++|. ++.++. +|.++++|++|++++ |.++.++ ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 369999999999998887 68999999999999997 888876 889999999999998 8999886 458899999999
Q ss_pred ecCCCCCCcCCccccCCCCCC---EEEcCCC-ccccCCc-cccccCCCc-EEEccCCcccccChhhhhcccccceeecCC
Q 014200 120 DCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPE-DLADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (429)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (429)
++++|++..+|. +..+++|+ +|++++| .++.++. .+..+++|+ .+++++|.+..++...+.. ++|+++++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999999887 88888888 9999999 8887764 488899999 9999999999888776666 8999999999
Q ss_pred cc-CCcCC-ccccCC-ccCCeEeccCCcCccCCccccccCCCcEEEcCCC
Q 014200 194 NL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (429)
Q Consensus 194 ~~-l~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 240 (429)
|+ ++.++ ..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 95 88775 457788 9999999999999988764 6889999999876
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=5.3e-21 Score=171.82 Aligned_cols=199 Identities=24% Similarity=0.369 Sum_probs=125.2
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCS 122 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~ 122 (429)
+++|+.|+++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++.. +.++++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 456777777777776655 4666777777777777776653 566777777777777777766543 5667777777777
Q ss_pred CCCCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC
Q 014200 123 SNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (429)
Q Consensus 123 ~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 200 (429)
+|++..++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++...+..+++|++|++++|.++.++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 7777765543 56667777777777766655433 456667777777777666666555556666666666666665543
Q ss_pred c-cccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC-ccChhhc
Q 014200 201 E-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELG 250 (429)
Q Consensus 201 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~ 250 (429)
. .+..+++|+.|++++|++. +.++.++.++++.|.++ .+|.+++
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred HHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 3 2455566666666665443 22444555555555444 3344443
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2e-22 Score=190.67 Aligned_cols=222 Identities=19% Similarity=0.180 Sum_probs=129.1
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCCcCcc----CCccc------
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK----IPDEI------ 110 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~~i~~----l~~~~------ 110 (429)
.++...++...+..++..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+.. +|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444445555555677778888999999999998874 33446788999999998875542 33333
Q ss_pred -cCCCCcCEEecCCCCCCc-----CCccccCCCCCCEEEcCCCcccc-----CCcccccc---------CCCcEEEccCC
Q 014200 111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEGN 170 (429)
Q Consensus 111 -~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~---------~~L~~L~l~~~ 170 (429)
..+++|++|++++|.+.. ++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 577888888888887774 45566667777777777777652 22223333 67777777776
Q ss_pred cccccCh----hhhhcccccceeecCCccCCc------CCccccCCccCCeEeccCCcCc-----cCCccccccCCCcEE
Q 014200 171 KLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEF 235 (429)
Q Consensus 171 ~~~~~~~----~~~~~~~~L~~L~l~~~~l~~------~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L 235 (429)
.+..... ..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.++ .++..+..+++|++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 6652221 123445555666665555541 1223444555555555555552 233444455555555
Q ss_pred EcCCCCCCc-----cChhhcC--CCCCCEEECCCCcCcc
Q 014200 236 YMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE 267 (429)
Q Consensus 236 ~l~~n~i~~-----~~~~~~~--~~~L~~L~l~~n~l~~ 267 (429)
++++|.++. ++..+.. +++|+.|++++|.++.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 555555542 2333322 4555555555555543
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=4.3e-22 Score=188.47 Aligned_cols=226 Identities=18% Similarity=0.195 Sum_probs=128.2
Q ss_pred cCCccEEEcCCCCCCc-----cchhccCCCCCCEEECCCCCCCC----cchh-------hhCCCCCcEeecCCCcCcc--
Q 014200 44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK-- 105 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~i~~----~~~~-------l~~l~~L~~L~l~~~~i~~-- 105 (429)
+++|++|++++|.++. ++..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5566666666666652 23335566666666666654432 2222 2566666666666666653
Q ss_pred ---CCccccCCCCcCEEecCCCCCCc-----CCccccCC---------CCCCEEEcCCCccc--cCC---ccccccCCCc
Q 014200 106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS 163 (429)
Q Consensus 106 ---l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~~~---~~l~~~~~L~ 163 (429)
++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.++ .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 44455666666666666666541 22222233 56666666666664 222 3445566666
Q ss_pred EEEccCCccccc-----ChhhhhcccccceeecCCccC-----CcCCccccCCccCCeEeccCCcCcc-----CCcccc-
Q 014200 164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSIS- 227 (429)
Q Consensus 164 ~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l-----~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~- 227 (429)
.|++++|.+... .+..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.++. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 666666665521 111345566666666666666 2345555666666666666666653 233342
Q ss_pred -ccCCCcEEEcCCCCCCc-----cChhh-cCCCCCCEEECCCCcCcccc
Q 014200 228 -GCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC 269 (429)
Q Consensus 228 -~~~~L~~L~l~~n~i~~-----~~~~~-~~~~~L~~L~l~~n~l~~~~ 269 (429)
.+++|++|++++|.++. +|..+ ..+++|+.|++++|.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 26666666666666664 55554 44566666666666665433
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.5e-21 Score=181.39 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=55.9
Q ss_pred eecCCCcCccC-CccccCCCCcCEEecCCCCCCcCC-----ccccCCC-CCCEEEcCCCccccC-Ccccccc-----CCC
Q 014200 96 LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-----SSLGRCL-NLSDFKASNNCITSL-PEDLADC-----SKM 162 (429)
Q Consensus 96 L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~-~L~~L~l~~~~~~~~-~~~l~~~-----~~L 162 (429)
.+++.|.+... |..+...++|++|++++|.+...+ ..+..++ +|++|++++|.++.. +..+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666633 333444445777777777766544 3445555 666666666666533 2223332 666
Q ss_pred cEEEccCCcccccChhhhhcc-----cccceeecCCccCCc
Q 014200 163 SKLDVEGNKLTVLSNNLIASW-----TMLTELIASKNLLNG 198 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~ 198 (429)
++|++++|.+...+...+... ++|++|++++|.++.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 666666666655444323222 455555555555543
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=7.2e-20 Score=164.42 Aligned_cols=206 Identities=22% Similarity=0.319 Sum_probs=174.7
Q ss_pred HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~ 84 (429)
+..+++++.|+++++.+.+++. +. .+++|++|++++|.++.++ .+..+++|++|++++|.++.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~--l~------------~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG--IQ------------YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred cccccceeeeeeCCCCcccccc--cc------------cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccC
Confidence 4567889999999999887763 22 3788999999999999875 7899999999999999999876
Q ss_pred h-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccC
Q 014200 85 A-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCS 160 (429)
Q Consensus 85 ~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~ 160 (429)
. .+.++++|++|++++|.+..++.. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..++
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 5 679999999999999999987655 78899999999999999987654 67899999999999999977544 68899
Q ss_pred CCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCc-cCCccccccCC
Q 014200 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCS 231 (429)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~ 231 (429)
+|+.|++++|.+..+++..+..+++|+.+++++|.+. ..++.++.+++..|.+. .+|..++.++.
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999999999999988877889999999999999664 34567888888888776 55666555443
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=4.5e-20 Score=181.07 Aligned_cols=182 Identities=25% Similarity=0.303 Sum_probs=159.0
Q ss_pred ccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCc
Q 014200 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264 (429)
Q Consensus 185 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~ 264 (429)
+++.|++++|.++.+|..+ +++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 8999999999999888765 378999999999999888 557999999999999999887 554 99999999999
Q ss_pred CccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCC
Q 014200 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (429)
Q Consensus 265 l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (429)
+++++. ...+|+.|++++|.++++|. .+++|+.|++++|.++.++. +.
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~------------------------- 179 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP------------------------- 179 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC-------------------------
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh-------------------------
Confidence 999877 55679999999999999887 67899999999999987765 21
Q ss_pred hhhHHhhhhccccccccccccCCccccCChhhhccCCC-------cEEeCCCCccccCChhhcccccceeeccccCCCcc
Q 014200 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI-------TKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKE 417 (429)
Q Consensus 345 ~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L-------~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i 417 (429)
++|+.|++++|+|+.+|. +.. +| +.|+|++|+|+.+|..+..+++|++|+ +++|++
T Consensus 180 ------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~--L~~N~l 242 (571)
T 3cvr_A 180 ------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTII--LEDNPL 242 (571)
T ss_dssp ------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEE--CCSSSC
T ss_pred ------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEE--eeCCcC
Confidence 378999999999999998 543 77 999999999999999999999999999 999999
Q ss_pred cc-cccc
Q 014200 418 SC-ISGC 423 (429)
Q Consensus 418 ~~-i~~~ 423 (429)
++ +|+.
T Consensus 243 ~~~~p~~ 249 (571)
T 3cvr_A 243 SSRIRES 249 (571)
T ss_dssp CHHHHHH
T ss_pred CCcCHHH
Confidence 88 5543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=169.45 Aligned_cols=219 Identities=17% Similarity=0.144 Sum_probs=122.4
Q ss_pred CCCEEECCCCCCCC--cch--hhhCCCCCcEeecCCCcCcc-CCccc--cCCCCcCEEecCCCCCCcC-C----ccccCC
Q 014200 69 LLTVLNVSHNKLSE--LPA--AIGELHMLKSLDVSFNSIMK-IPDEI--GSATALVKFDCSSNQLKEL-P----SSLGRC 136 (429)
Q Consensus 69 ~L~~L~l~~~~i~~--~~~--~l~~l~~L~~L~l~~~~i~~-l~~~~--~~~~~L~~L~l~~~~l~~~-~----~~~~~~ 136 (429)
.++.+.+.++.+.. +.. .+..+++|++|++++|.+.. .|..+ ..+++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45556665555441 111 12234456666666665552 33334 5566666666666665531 1 123345
Q ss_pred CCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccc---cC-hhhhhcccccceeecCCccCCcCCc----cccCCc
Q 014200 137 LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTV---LS-NNLIASWTMLTELIASKNLLNGMPE----TIGSLS 207 (429)
Q Consensus 137 ~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~---~~-~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~ 207 (429)
++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++ ...+..+++|++|++++|.++.++. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 66666666666665443 445566666666666665432 11 1112455666666666666654433 134556
Q ss_pred cCCeEeccCCcCccC-Ccccccc---CCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEcc
Q 014200 208 RLIRLDLHQNRILSI-PSSISGC---CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (429)
Q Consensus 208 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~ 283 (429)
+|++|++++|.+... |..+..+ ++|++|++++|.++.+|..+. ++|++|++++|.+++++.....++|+.|+++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 666777777666654 4444444 567777777777766665543 5677777777777665443333457777777
Q ss_pred CCCCCC
Q 014200 284 NNSLSG 289 (429)
Q Consensus 284 ~n~l~~ 289 (429)
+|.+++
T Consensus 303 ~N~l~~ 308 (310)
T 4glp_A 303 GNPFLV 308 (310)
T ss_dssp STTTSC
T ss_pred CCCCCC
Confidence 776653
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=7.1e-21 Score=176.63 Aligned_cols=241 Identities=16% Similarity=0.191 Sum_probs=139.3
Q ss_pred ccEEEcCCCCCCccchhccCC--CCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc--CCccccCCCCcCEEecC
Q 014200 47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS 122 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~--~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~ 122 (429)
+++++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 556666655554 2233333 56666666666655444444456666666666665542 44555666666666666
Q ss_pred CCCCC-cCCccccCCCCCCEEEcCCC-ccc--cCCccccccCCCcEEEccCC-cccccC-hhhhhccc-ccceeecCCcc
Q 014200 123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVLS-NNLIASWT-MLTELIASKNL 195 (429)
Q Consensus 123 ~~~l~-~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~l~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~-~L~~L~l~~~~ 195 (429)
+|.+. ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++... ...+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 66655 33445555666666666666 444 24444556666777777666 555321 22355566 66666666663
Q ss_pred --C--CcCCccccCCccCCeEeccCCc-Cc-cCCccccccCCCcEEEcCCCC-CCc-cChhhcCCCCCCEEECCCCcCcc
Q 014200 196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LSA-LPAELGKLSKLGTLDLHSNQLKE 267 (429)
Q Consensus 196 --l--~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~n~-i~~-~~~~~~~~~~L~~L~l~~n~l~~ 267 (429)
+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. ++. ....+..+++|+.|++++| +..
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 3 2344455566777777777776 44 344566677777777777773 321 1234666777777777777 443
Q ss_pred ccchhhccccCEEEccCCCCCCC
Q 014200 268 YCVEACQLRLSVLDLSNNSLSGL 290 (429)
Q Consensus 268 ~~~~~~~~~L~~l~l~~n~l~~l 290 (429)
-........++.|++++|.+++.
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCCT
T ss_pred HHHHHHHhhCcceEEecccCccc
Confidence 22222223366677777777763
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=170.62 Aligned_cols=222 Identities=18% Similarity=0.191 Sum_probs=179.6
Q ss_pred CCCCCcEeecCCCcCcc--CCc--cccCCCCcCEEecCCCCCC-cCCccc--cCCCCCCEEEcCCCccccC-C----ccc
Q 014200 89 ELHMLKSLDVSFNSIMK--IPD--EIGSATALVKFDCSSNQLK-ELPSSL--GRCLNLSDFKASNNCITSL-P----EDL 156 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~--l~~--~~~~~~~L~~L~l~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~~~~-~----~~l 156 (429)
....++.+.+.++.+.. +.. .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34457888888876651 111 1223577999999999988 445555 7899999999999998843 2 234
Q ss_pred cccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc---C--CccccCCccCCeEeccCCcCccCCc----ccc
Q 014200 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---M--PETIGSLSRLIRLDLHQNRILSIPS----SIS 227 (429)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~ 227 (429)
..+++|++|++++|.+..++...+..+++|++|++++|.+.. + +..+..+++|+.|++++|.++.++. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 568999999999999998888778899999999999998743 2 3344688999999999999986554 257
Q ss_pred ccCCCcEEEcCCCCCCcc-ChhhcCC---CCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEE
Q 014200 228 GCCSLAEFYMGNNALSAL-PAELGKL---SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL 303 (429)
Q Consensus 228 ~~~~L~~L~l~~n~i~~~-~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L 303 (429)
.+++|++|++++|.++.. |..+..+ ++|++|++++|.++.++.... .+|++|++++|+++++|. +..+++|+.|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 789999999999999976 7666665 799999999999998876654 689999999999999866 7889999999
Q ss_pred EccCCCCCC
Q 014200 304 LLTGNPLRT 312 (429)
Q Consensus 304 ~l~~~~i~~ 312 (429)
++++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999864
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=7.3e-21 Score=178.26 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=105.1
Q ss_pred CCccEEEcCCCCCCccc-----hhccCCC-CCCEEECCCCCCCCc-chhhhCC-----CCCcEeecCCCcCccCCcc---
Q 014200 45 VDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PAAIGEL-----HMLKSLDVSFNSIMKIPDE--- 109 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~-----~~~~~~~-~L~~L~l~~~~i~~~-~~~l~~l-----~~L~~L~l~~~~i~~l~~~--- 109 (429)
++|++|++++|.++..+ ..+.+++ +|++|++++|.++.. +..+..+ ++|++|++++|.+...+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 44777777777776544 3466666 677777777776644 2334332 7777777777776643322
Q ss_pred --ccCC-CCcCEEecCCCCCCcCCc-----cccC-CCCCCEEEcCCCcccc-----CCccccccC-CCcEEEccCCcccc
Q 014200 110 --IGSA-TALVKFDCSSNQLKELPS-----SLGR-CLNLSDFKASNNCITS-----LPEDLADCS-KMSKLDVEGNKLTV 174 (429)
Q Consensus 110 --~~~~-~~L~~L~l~~~~l~~~~~-----~~~~-~~~L~~L~l~~~~~~~-----~~~~l~~~~-~L~~L~l~~~~~~~ 174 (429)
+..+ ++|++|++++|.+...+. .+.. .++|++|++++|.++. ++..+...+ +|++|++++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3444 667777777776664432 1222 2466667776666652 223333443 66666666666655
Q ss_pred cChhhhhc----c-cccceeecCCccCCc-----CCccccC-CccCCeEeccCCcCccCC-----ccccccCCCcEEEcC
Q 014200 175 LSNNLIAS----W-TMLTELIASKNLLNG-----MPETIGS-LSRLIRLDLHQNRILSIP-----SSISGCCSLAEFYMG 238 (429)
Q Consensus 175 ~~~~~~~~----~-~~L~~L~l~~~~l~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~ 238 (429)
.+...+.. . ++|++|++++|.++. ++..+.. .++|+.|++++|.++..+ ..+..+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 44432222 2 355555555555543 2222222 234555555555544321 123344445555555
Q ss_pred CCC
Q 014200 239 NNA 241 (429)
Q Consensus 239 ~n~ 241 (429)
+|.
T Consensus 262 ~n~ 264 (362)
T 3goz_A 262 YDI 264 (362)
T ss_dssp HHH
T ss_pred cCC
Confidence 544
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=5.8e-19 Score=156.56 Aligned_cols=128 Identities=27% Similarity=0.400 Sum_probs=75.9
Q ss_pred ccceeecCCccCCcCCccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCC
Q 014200 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHS 262 (429)
Q Consensus 185 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~ 262 (429)
..++++++++.++.+|..+. +.++.|++++|.+..++ ..+..+++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45667777777776665443 46777777777776553 35666777777777777766553 3456666677776666
Q ss_pred CcCccccchhh--ccccCEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCCcc
Q 014200 263 NQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLR 314 (429)
Q Consensus 263 n~l~~~~~~~~--~~~L~~l~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~i~~~~ 314 (429)
|.++.++...+ ..+|++|++++|.+++++.. +.++++|+.|++++|.++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 66665554322 22355555555555554332 455555555555555554443
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=8.9e-19 Score=155.36 Aligned_cols=172 Identities=26% Similarity=0.382 Sum_probs=106.4
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AI 87 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l 87 (429)
..+.++++++.++++|..+. +++++|+++++.++.++. .|.++++|++|++++|.++.++. .+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---------------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCeEEecCCCCccccCCCCC---------------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 45667777777777766553 236777777777765554 46667777777777777665543 46
Q ss_pred hCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCc-cccccCCCcE
Q 014200 88 GELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSK 164 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~ 164 (429)
.++++|++|++++|.+..++. .+..+++|++|++++|++..++.. +..+++|++|++++|.++.++. .+..+++|+.
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 667777777777776665543 356666777777776666665543 4556666666666666665543 3555666666
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccC
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 196 (429)
|++++|.+..++...+..+++|+.+++++|.+
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 66666666555544445555555555555544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.4e-19 Score=165.33 Aligned_cols=233 Identities=20% Similarity=0.236 Sum_probs=169.7
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCC-Ccch-hhh
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG 88 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~-~~~~-~l~ 88 (429)
++++++++++++||..++ +++++|++++|+++.++. .|+++++|++|++++|.+. .+|. +|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 678899999999988764 358999999999999986 5899999999999999875 4554 778
Q ss_pred CCCCCcE-eecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCC-CccccCCc-ccccc-CCC
Q 014200 89 ELHMLKS-LDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM 162 (429)
Q Consensus 89 ~l~~L~~-L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~-~~L 162 (429)
+++++.+ +.+..|.+..++ ..+..+++|++|++++|++..++. .+....++..+++.+ +.+..++. .+..+ ..+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 8888776 445567888774 557889999999999998887764 344555677777755 45665543 34443 467
Q ss_pred cEEEccCCcccccChhhhhcccccceeecC-CccCCcCCc-cccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCC
Q 014200 163 SKLDVEGNKLTVLSNNLIASWTMLTELIAS-KNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 240 (429)
+.|++++|.++.++...+ ...+++++.+. +|.++.+|. .+..+++|+.|++++|.++.+|. ..+.+|+.|.+.++
T Consensus 157 ~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARST 233 (350)
T ss_dssp EEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTC
T ss_pred hhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccC
Confidence 888888888888776644 34577888876 466777764 46778888888888888887765 33556666665554
Q ss_pred -CCCccChhhcCCCCCCEEECCCC
Q 014200 241 -ALSALPAELGKLSKLGTLDLHSN 263 (429)
Q Consensus 241 -~i~~~~~~~~~~~~L~~L~l~~n 263 (429)
.++.+| .+..+++|+.+++.++
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcCcCC-CchhCcChhhCcCCCC
Confidence 455666 3677778888887654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5.8e-19 Score=159.96 Aligned_cols=169 Identities=22% Similarity=0.346 Sum_probs=88.8
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 123 (429)
+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 345666666666665554 35556666666666666665544 5566666666666665555433 55556666666666
Q ss_pred CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (429)
Q Consensus 124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 203 (429)
|++..+ ..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++. +
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence 655554 2344555555555555555544 344445555555555555444433 4444444444444444444332 3
Q ss_pred cCCccCCeEeccCCcCc
Q 014200 204 GSLSRLIRLDLHQNRIL 220 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~ 220 (429)
..+++|+.|++++|++.
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 44444444444444433
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=6.7e-20 Score=170.02 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=190.4
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC--cchh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~--~~~~ 86 (429)
...+.+|++++.+. +..+..+. .++++.++++++.+...+..+..+++|++|++++|.+.. ++..
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred hhheeeccccccCC---HHHHHhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 45789999998875 33443321 167999999999988776667789999999999999873 6778
Q ss_pred hhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCC-CCC--cCCccccCCCCCCEEEcCCC-cccc--CCcccccc
Q 014200 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC 159 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~-~l~--~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~l~~~ 159 (429)
+..+++|++|++++|.+. ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 899999999999999877 45667888999999999999 677 35666788999999999999 8873 56668888
Q ss_pred C-CCcEEEccCCc--ccc-cChhhhhcccccceeecCCcc-CC-cCCccccCCccCCeEeccCCc-Ccc-CCccccccCC
Q 014200 160 S-KMSKLDVEGNK--LTV-LSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-ILS-IPSSISGCCS 231 (429)
Q Consensus 160 ~-~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~ 231 (429)
+ +|++|++++|. ++. ..+..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +.. ....+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 99999999994 432 112346788999999999998 54 455677888999999999995 321 1235788999
Q ss_pred CcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccccchh
Q 014200 232 LAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEA 272 (429)
Q Consensus 232 L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 272 (429)
|++|++++| ++. ....+. ..+..|++++|.+++..+..
T Consensus 274 L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 274 LKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 999999999 542 222222 23555568999988765543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.3e-18 Score=162.10 Aligned_cols=233 Identities=19% Similarity=0.208 Sum_probs=144.2
Q ss_pred cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCc-cCCc-cccCCCCcCE-EecCC
Q 014200 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIPD-EIGSATALVK-FDCSS 123 (429)
Q Consensus 48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~-~l~~-~~~~~~~L~~-L~l~~ 123 (429)
++++.++++++.+|..+ .+++++|++++|.|+.+|. +|+++++|++|++++|.+. .++. .|.+++++++ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67888888899998766 3689999999999998876 7899999999999999875 4543 4678888776 44566
Q ss_pred CCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccC-CcccccChhhhhccc-ccceeecCCccCCcC
Q 014200 124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM 199 (429)
Q Consensus 124 ~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~ 199 (429)
|++..++ ..+..+++|++|++++|.+..++. .+....++..+++.+ +.+..++...+..+. .++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 7888764 567788888888888888876653 344455666777654 345555544333332 344455555554444
Q ss_pred CccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCC-CCCCccCh-hhcCCCCCCEEECCCCcCccccchhhcccc
Q 014200 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN-NALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (429)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L 277 (429)
+..... ..+++++++.+ |.++.+|. +|+.+++|+.|++++|.++.++...+ .+|
T Consensus 170 ~~~~f~-----------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-~~L 225 (350)
T 4ay9_X 170 HNSAFN-----------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-ENL 225 (350)
T ss_dssp CTTSST-----------------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-TTC
T ss_pred Chhhcc-----------------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh-ccc
Confidence 433333 34444455442 34444433 34555555555555555555544322 235
Q ss_pred CEEEccCC-CCCCCCccccCCCCCCEEEccC
Q 014200 278 SVLDLSNN-SLSGLPPEIGKMTTLRKLLLTG 307 (429)
Q Consensus 278 ~~l~l~~n-~l~~l~~~l~~~~~L~~L~l~~ 307 (429)
++|.+.++ +++.+|. +.++++|+.+++.+
T Consensus 226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 55554433 3444543 55666666666654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.6e-18 Score=155.60 Aligned_cols=176 Identities=23% Similarity=0.305 Sum_probs=156.4
Q ss_pred HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~ 84 (429)
+..+++++.|+++++.+.+++. +. .+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~--~~------------~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG--IQ------------YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hhhcCcccEEEccCCCcccChh--Hh------------cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 4678899999999999998854 33 37889999999999998886 999999999999999999875
Q ss_pred hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (429)
Q Consensus 85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~ 164 (429)
. +..+++|++|++++|.+..+ +.+..+++|++|++++|++..+ ..+..+++|++|++++|.++.++. +..+++|+.
T Consensus 107 ~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN 182 (291)
T ss_dssp G-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred h-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCE
Confidence 4 89999999999999999987 4688899999999999999988 678899999999999999998765 888999999
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCCcCCc
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 201 (429)
|++++|.+..++. +..+++|+.|++++|.+...|.
T Consensus 183 L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp EECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCE
T ss_pred EECCCCcCCCChh--hccCCCCCEEECcCCcccCCcc
Confidence 9999999998754 8889999999999998876553
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=9e-19 Score=156.20 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=139.0
Q ss_pred cccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECC
Q 014200 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261 (429)
Q Consensus 182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~ 261 (429)
.+..+..+++.++.++.++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++ +..+++|+.|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4456677778888777765 4667888899999999888877 67888999999999999988876 8889999999999
Q ss_pred CCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccc
Q 014200 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 341 (429)
Q Consensus 262 ~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (429)
+|.+++++.... .+|++|++++|.+++++ .+.++++|+.|++++|.+++++.
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~-------------------------- 145 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM-------------------------- 145 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--------------------------
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--------------------------
Confidence 999888766555 67999999999998875 48889999999999998876531
Q ss_pred cCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCCh
Q 014200 342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP 397 (429)
Q Consensus 342 ~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 397 (429)
....++|+.|++++|.++.+ ..+..+++|+.|++++|.++..|.
T Consensus 146 -----------l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 146 -----------LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -----------GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -----------HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 11135788899999988877 567788999999999998886543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.1e-17 Score=165.81 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=136.1
Q ss_pred EccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc
Q 014200 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (429)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 245 (429)
.+..+.+..+.. ...++.|+.|+++++.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 344444443322 456677777777777777665 36677788888888887777655 77788888888888887776
Q ss_pred ChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHH
Q 014200 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325 (429)
Q Consensus 246 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~ 325 (429)
+ .+..+++|+.|++++|.+..++......+|+.|++++|.++++ ..+..+++|+.|++++|.+..++. +
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l------- 171 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--L------- 171 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--G-------
T ss_pred h-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--h-------
Confidence 5 5777888888888888888776555555688888888888877 567888888888888888765432 1
Q ss_pred HHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCC
Q 014200 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396 (429)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~ 396 (429)
..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+++.|
T Consensus 172 ----------------------------~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 172 ----------------------------AGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred ----------------------------ccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 11357788888888888775 5778888999999988887743
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=8.8e-18 Score=149.77 Aligned_cols=167 Identities=23% Similarity=0.272 Sum_probs=89.5
Q ss_pred hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhh
Q 014200 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI 87 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l 87 (429)
+.++..++++++.+++++. +.. +++|++|+++++.++.++ .+..+++|+.|++++|.++.++. +
T Consensus 18 l~~l~~l~l~~~~i~~~~~--~~~------------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS--QKE------------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L 81 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHH------------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred HHHHHHHHhcCCCcccccc--hhh------------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence 3445555566666555541 221 445666666666666555 45556666666666666665554 5
Q ss_pred hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEc
Q 014200 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (429)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l 167 (429)
.++++|++|++++|.+..++.... ++|++|++++|++..++ .+..+++|++|++++|.++.++ .+..+++|+.|++
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence 566666666666666655544322 55666666666555543 3455555555555555555443 3445555555555
Q ss_pred cCCcccccChhhhhcccccceeecCCccC
Q 014200 168 EGNKLTVLSNNLIASWTMLTELIASKNLL 196 (429)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 196 (429)
++|.+... ..+..+++|+.+++++|.+
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 55555444 1234444444444444444
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1e-17 Score=166.13 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=110.4
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 123 (429)
+++|+.|+++++.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 455667777766666665 46666777777777776666654 666777777777777666554 466666777777777
Q ss_pred CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (429)
Q Consensus 124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 203 (429)
|.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 666665 3455666677777777666655 455666667777776666665544 566666666666666666553 35
Q ss_pred cCCccCCeEeccCCcCccC
Q 014200 204 GSLSRLIRLDLHQNRILSI 222 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~ 222 (429)
..+++|+.|++++|.+...
T Consensus 194 ~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEEccCCcCcCC
Confidence 5666666666666665543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.9e-17 Score=143.50 Aligned_cols=154 Identities=25% Similarity=0.387 Sum_probs=99.3
Q ss_pred EEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCC
Q 014200 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPL 310 (429)
Q Consensus 234 ~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i 310 (429)
.++++++.++.+|..+. ++++.|++++|.++.++...+. .+|++|++++|.++.+ +..+.++++|+.|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34444444444443322 3455555555555544432221 2355555555555553 55667777777777777777
Q ss_pred CCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-ChhhhccCCCcEEeCCC
Q 014200 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSR 389 (429)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~ 389 (429)
+.++...|.+. ++|+.|++++|.++.+ +..+..+++|++|+|++
T Consensus 93 ~~l~~~~f~~l-----------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 93 TELPKSLFEGL-----------------------------------FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCCCTTTTTTC-----------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHccCC-----------------------------------CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 76665544332 4677778888877765 45566788899999999
Q ss_pred CccccCC-hhhcccccceeeccccCCCccccccccccccc
Q 014200 390 NSIQELP-PELSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 390 n~i~~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
|+|++++ ..+..+++|++|+ +++|++.| +|-+.|+
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~--L~~N~~~c--~c~l~~l 173 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMH--LAQNPFIC--DCHLKWL 173 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEE--CCSSCEEC--SGGGHHH
T ss_pred CcCCEECHHHHhCCCCCCEEE--eCCCCcCC--CCccHHH
Confidence 9888854 4577888899998 99999888 6777774
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=143.43 Aligned_cols=112 Identities=24% Similarity=0.442 Sum_probs=71.9
Q ss_pred cCEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200 277 LSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (429)
Q Consensus 277 L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (429)
|++|++++|.+++++. .+.++++|+.|++++|.++.++...|.+
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------- 103 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG----------------------------------- 103 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-----------------------------------
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-----------------------------------
Confidence 5555555555554332 4556666666666666665554433322
Q ss_pred ccccccccccCCccccC-ChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccccc
Q 014200 356 SVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYLYW 427 (429)
Q Consensus 356 ~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~ 427 (429)
.++|+.|++++|.++.+ |..+..+++|++|+|++|++++ .|..+..+++|++|+ +++|+++| +|-+.|
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~c--~c~l~~ 173 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN--LLANPFNC--NCYLAW 173 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE--CCSCCEEC--SGGGHH
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE--ecCcCCcC--CCchHH
Confidence 13566666666666644 5556677888888888888887 467777888888888 88888887 555555
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.6e-17 Score=140.67 Aligned_cols=173 Identities=22% Similarity=0.322 Sum_probs=125.9
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhC
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~ 89 (429)
+.++++++.++.+|...+ +++++|+++++.++.++. .|..+++|++|++++|.++.++. .+..
T Consensus 10 ~~v~c~~~~l~~~p~~~~---------------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP---------------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEecCCCccCCCCCCC---------------CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence 567788888888876553 358888888888887765 36788888888888888887765 5678
Q ss_pred CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEE
Q 014200 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLD 166 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~ 166 (429)
+++|++|++++|.+..++.. +.++++|++|++++|++..++.. +..+++|++|++++|.++.++.. +..+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 88888888888888877654 57788888888888888876653 56778888888888877766543 66777888888
Q ss_pred ccCCcccccChhhhhcccccceeecCCccCC-cCCccccCC
Q 014200 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL 206 (429)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~ 206 (429)
+++|.+. ..++.++.++++.|.++ .+|..+..+
T Consensus 155 l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 155 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 8777543 23456667777666664 345544443
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.4e-17 Score=153.15 Aligned_cols=171 Identities=25% Similarity=0.302 Sum_probs=141.2
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchh-cc-CCCCCCEEECCCCCCCCcch-hhh
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LR-NLPLLTVLNVSHNKLSELPA-AIG 88 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~-~~~~L~~L~l~~~~i~~~~~-~l~ 88 (429)
+.+++++++++.+|..++. .++.|++++|.++.++.. +. .+++|+.|++++|.+..++. +|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~---------------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS---------------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT---------------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEEeCCCCcCccCccCCC---------------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc
Confidence 5789999999999886643 488999999999988764 65 89999999999999997764 789
Q ss_pred CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCccc----cccCCC
Q 014200 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDL----ADCSKM 162 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~L 162 (429)
++++|++|++++|.+..++. .+.++++|++|++++|++..+ +..+..+++|++|++++|.++.++..+ ..+++|
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 99999999999999887755 478899999999999999866 457888899999999999998887654 568899
Q ss_pred cEEEccCCcccccChhhhhcccc--cceeecCCccCC
Q 014200 163 SKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLN 197 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~ 197 (429)
+.|++++|.+..++...+..++. ++.+++++|.+.
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999998888777777776 477888888663
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.8e-17 Score=152.79 Aligned_cols=179 Identities=25% Similarity=0.342 Sum_probs=104.5
Q ss_pred ceeecCCccCCcCCccccCCccCCeEeccCCcCccCCc-ccc-ccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCCC
Q 014200 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SIS-GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN 263 (429)
Q Consensus 187 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~n 263 (429)
+.++++++.++.+|..+. +.++.|++++|.++.++. .+. .+++|++|++++|.++.++ ..+..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 345555555555554332 335556666555554432 233 5555555555555555443 23455555555555555
Q ss_pred cCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccC
Q 014200 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (429)
Q Consensus 264 ~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (429)
.++.++. ..+..+++|+.|++++|.++.++...|.+
T Consensus 99 ~l~~~~~---------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~----------------------- 134 (361)
T 2xot_A 99 HLHTLDE---------------------FLFSDLQALEVLLLYNNHIVVVDRNAFED----------------------- 134 (361)
T ss_dssp CCCEECT---------------------TTTTTCTTCCEEECCSSCCCEECTTTTTT-----------------------
T ss_pred cCCcCCH---------------------HHhCCCcCCCEEECCCCcccEECHHHhCC-----------------------
Confidence 5444332 23555666666666666665544333322
Q ss_pred ChhhHHhhhhccccccccccccCCccccCChhh----hccCCCcEEeCCCCccccCC-hhhccccc--ceeeccccCCCc
Q 014200 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEI----WEAGEITKLDLSRNSIQELP-PELSSCAS--LQVKFSDLVTNK 416 (429)
Q Consensus 344 ~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~----~~~~~L~~L~ls~n~i~~~~-~~l~~l~~--L~~L~~~l~~n~ 416 (429)
.++|+.|++++|.++.+|..+ ..+++|+.|||++|+|+++| ..+..++. ++.|+ +++|+
T Consensus 135 ------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~--l~~N~ 200 (361)
T 2xot_A 135 ------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY--LHNNP 200 (361)
T ss_dssp ------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE--CCSSC
T ss_pred ------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE--ecCCC
Confidence 135666666666666666655 35788888888888888866 45667776 47888 99999
Q ss_pred ccccccccccc
Q 014200 417 ESCISGCYLYW 427 (429)
Q Consensus 417 i~~i~~~~~~~ 427 (429)
+.| +|-++|
T Consensus 201 ~~C--~C~l~~ 209 (361)
T 2xot_A 201 LEC--DCKLYQ 209 (361)
T ss_dssp EEC--CHHHHH
T ss_pred ccC--CcCcHH
Confidence 888 676654
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2e-17 Score=140.94 Aligned_cols=153 Identities=11% Similarity=0.136 Sum_probs=104.5
Q ss_pred cccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC-CCccccCCCCCCEEEc
Q 014200 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLL 305 (429)
Q Consensus 227 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l 305 (429)
..+++|++|++++|.++.++ .+..+++|++|++++|.+..++......+|++|++++|.+++ .+..+..+++|+.|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44555555555555555555 455556666666666655555433334456677777776665 4566778888888888
Q ss_pred cCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCc-cccCChhhhccCCCcE
Q 014200 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITK 384 (429)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-i~~~~~~~~~~~~L~~ 384 (429)
++|.+++.. +.. ....++|++|++++|. ++.++ .+..+++|++
T Consensus 120 s~n~i~~~~--------~~~---------------------------l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 120 SHSAHDDSI--------LTK---------------------------INTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163 (197)
T ss_dssp CSSBCBGGG--------HHH---------------------------HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred cCCccCcHh--------HHH---------------------------HhhCCCCCEEEccCCCCccccH-hhcCCCCCCE
Confidence 888875421 111 1123578889999987 77777 6888999999
Q ss_pred EeCCCCccccCChhhcccccceeeccccCCCcccc
Q 014200 385 LDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 385 L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
|++++|++++++ .+..+++|++|+ +++|+|++
T Consensus 164 L~l~~n~i~~~~-~l~~l~~L~~L~--l~~N~i~~ 195 (197)
T 4ezg_A 164 LNIQFDGVHDYR-GIEDFPKLNQLY--AFSQTIGG 195 (197)
T ss_dssp EECTTBCCCCCT-TGGGCSSCCEEE--ECBC----
T ss_pred EECCCCCCcChH-HhccCCCCCEEE--eeCcccCC
Confidence 999999999987 688999999999 99999875
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1e-16 Score=139.85 Aligned_cols=148 Identities=24% Similarity=0.358 Sum_probs=108.2
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCCCcch-hhh
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIG 88 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~~~~~-~l~ 88 (429)
-+.+++++++++++|..+. ++|++|++++|.++.+ +..|..+++|+.|++++|.++.++. .|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---------------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEeEccCCCcCccCCCCC---------------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 3567777777777776553 3577888888877766 3457777888888888888777764 567
Q ss_pred CCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD 166 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 166 (429)
.+++|++|++++|.++.++.. +..+++|++|++++|++..+|..+..+++|++|++++|.++.++. .+..+++|+.|+
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 778888888888877776544 567778888888888777777777777778888887777776653 466677777777
Q ss_pred ccCCccc
Q 014200 167 VEGNKLT 173 (429)
Q Consensus 167 l~~~~~~ 173 (429)
+++|.+.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 7777665
No 112
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=4.7e-16 Score=147.20 Aligned_cols=326 Identities=12% Similarity=0.144 Sum_probs=215.2
Q ss_pred cCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccC
Q 014200 36 GEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGS 112 (429)
Q Consensus 36 ~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~ 112 (429)
+...+|.+|.+|+.+.+.. .++.|++ +|.+|++|+.+++.++ ++.++. +|.++++|+.+.+..+ +..+. ..|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3445566788899999974 4777765 6899999999999754 666654 8889999998877654 44333 33555
Q ss_pred CCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeec
Q 014200 113 ATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191 (429)
Q Consensus 113 ~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 191 (429)
+.. ........ +..+ ...+..|++|+.+.+..+...--...|..+.+|+.+.+..+ +..++...+..+..|+.+.+
T Consensus 139 ~~~-~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 139 CDF-KEITIPEG-VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCC-SEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccc-cccccCcc-ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 543 33333222 2222 24677888999998876543322345778888998888655 66677777888888888877
Q ss_pred CCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccch
Q 014200 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271 (429)
Q Consensus 192 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 271 (429)
..+.. .+.........|+.+.+......-...++..+..++.+.+..+...--...+..+..++.+......+.....
T Consensus 216 ~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F- 293 (394)
T 4fs7_A 216 PNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTF- 293 (394)
T ss_dssp CTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTT-
T ss_pred CCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccc-
Confidence 66533 2233344556788888765433233456788888988888766443334567788888888776654332211
Q ss_pred hhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHh
Q 014200 272 ACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (429)
Q Consensus 272 ~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (429)
....+|+.+.+..+ ++.+ ..+|.+|++|+.+++.++ ++.++...|.+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c----------------------------- 342 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC----------------------------- 342 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC-----------------------------
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC-----------------------------
Confidence 12234788877654 5554 345788888888888644 777776666653
Q ss_pred hhhccccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCChhhcccccceee
Q 014200 351 MATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPELSSCASLQVK 408 (429)
Q Consensus 351 ~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L 408 (429)
.+|+.+++..+ ++.+.+ ++..|++|+++++..+ ++.+..++.+|++|+++
T Consensus 343 ------~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 ------TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ------TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred ------CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 47788888765 665543 4557888888888754 44455677788888765
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.8e-17 Score=137.20 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=118.4
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc-CCccccCCCCcCEEecC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCS 122 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~l~ 122 (429)
+++|++|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 566888888888888877 6788888888888888776654 67788888888888888874 56678888888888888
Q ss_pred CCCCCc-CCccccCCCCCCEEEcCCCc-cccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC
Q 014200 123 SNQLKE-LPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (429)
Q Consensus 123 ~~~l~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 197 (429)
+|++.. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++ .+..+++|+++++++|.+.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 888874 45677788888888888887 77765 6788888899999888888766 3778888888888888764
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=138.58 Aligned_cols=147 Identities=19% Similarity=0.292 Sum_probs=122.8
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch--hccCCCCCCEEECCCCCCCCcch-hhh
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE--DLRNLPLLTVLNVSHNKLSELPA-AIG 88 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~i~~~~~-~l~ 88 (429)
+.++++++.++.+|..++. .+++|++++|.++.++. .|..+++|+.|++++|.++.++. +|.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~---------------~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ---------------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT---------------TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEeEeCCCCcccCccCCCC---------------CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 5789999999988876643 37899999999987743 47889999999999999887765 788
Q ss_pred CCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccC-CccccccCCCcEE
Q 014200 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL 165 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L 165 (429)
++++|++|++++|.+..++.. +.++++|++|++++|++..+ +..+..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 999999999999988877654 78899999999999998876 56788888999999999988866 6678888899999
Q ss_pred EccCCccc
Q 014200 166 DVEGNKLT 173 (429)
Q Consensus 166 ~l~~~~~~ 173 (429)
++++|.+.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 99888776
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.7e-16 Score=137.55 Aligned_cols=147 Identities=18% Similarity=0.302 Sum_probs=119.2
Q ss_pred CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhhC
Q 014200 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (429)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~ 89 (429)
+.+++++++++.+|..++ +++++|++++|.++.++. .|..+++|+.|++++|.+..+ |..|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~---------------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---------------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---------------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCCCCcCcCCCccC---------------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 568888888888887654 358889999998888776 688888999999999988866 568888
Q ss_pred CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD 166 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 166 (429)
+++|++|++++|.+..+|.. +.++++|++|++++|++..+ +..+..+++|++|++++|.++.++. .+..+++|+.++
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 89999999999888888765 57788899999988888866 4567788888888888888886654 477788888888
Q ss_pred ccCCccc
Q 014200 167 VEGNKLT 173 (429)
Q Consensus 167 l~~~~~~ 173 (429)
+++|.+.
T Consensus 159 L~~N~~~ 165 (220)
T 2v9t_B 159 LAQNPFI 165 (220)
T ss_dssp CCSSCEE
T ss_pred eCCCCcC
Confidence 8888765
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=3.1e-16 Score=134.79 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=123.9
Q ss_pred ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN 124 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~ 124 (429)
-+.++.+++.++.+|..+ .+++++|++++|.++.++. .+.++++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 367888888888887654 4689999999999887765 578899999999999988877654 577888999999888
Q ss_pred CCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (429)
Q Consensus 125 ~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 202 (429)
++..++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+++++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 88877653 56778888888888887766543 566777888888777777666655566666666666666432
Q ss_pred ccCCccCCeEeccCCcCc-cCCcccc
Q 014200 203 IGSLSRLIRLDLHQNRIL-SIPSSIS 227 (429)
Q Consensus 203 ~~~~~~L~~L~l~~~~~~-~~~~~~~ 227 (429)
..+++++.|++..|.++ .+|..++
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCc
Confidence 23345555555555544 3344333
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=8.5e-16 Score=133.98 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=127.8
Q ss_pred ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN 124 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~ 124 (429)
-+.++.++++++.+|..+. ++|+.|++++|.+..+ +..|.++++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 6789999999999987554 8999999999999977 55889999999999999999988754 688999999999999
Q ss_pred CCCcCCcc-ccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC
Q 014200 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (429)
Q Consensus 125 ~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 197 (429)
++..++.. +..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++...+..+++|+.+++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99988654 67889999999999999998888888999999999999888887766777777888888777664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.1e-18 Score=171.93 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=79.2
Q ss_pred CCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCC
Q 014200 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217 (429)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 217 (429)
.|+.|++++|.++.+|. +..+++|+.|++++|.+..+|. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 35666666666666654 6666666666666666665554 3666666666666666666665 5666777777777777
Q ss_pred cCccC--CccccccCCCcEEEcCCCCCCccChh----hcCCCCCCEEEC
Q 014200 218 RILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDL 260 (429)
Q Consensus 218 ~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~L~~L~l 260 (429)
.++.+ |..+..+++|+.|++++|.++..|+. +..+|+|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77766 66777777777777777777755433 344677777753
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.4e-16 Score=160.09 Aligned_cols=195 Identities=20% Similarity=0.259 Sum_probs=119.1
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~ 88 (429)
..++.|++.++.+..++...+....- .--++..+++..+.+...+..+..+++|+.|++++|.+..+|..+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 45778888888887766655443110 0012333444445555556678999999999999999999998888
Q ss_pred CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEcc
Q 014200 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~ 168 (429)
++++|++|++++|.+..+|..+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccChhhhhccc-ccceeecCCccCCc-CCccccCCccCCeEeccCC
Q 014200 169 GNKLTVLSNNLIASWT-MLTELIASKNLLNG-MPETIGSLSRLIRLDLHQN 217 (429)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~ 217 (429)
+|.+....+..+.... ....+++++|.++. +| ..++.|+++.+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 9999876665554432 22346777777753 23 24555666555
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2e-17 Score=163.08 Aligned_cols=179 Identities=21% Similarity=0.209 Sum_probs=116.5
Q ss_pred cCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCc-------------ccccChhhhhcccccceee-cCCccCCcC
Q 014200 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-------------LTVLSNNLIASWTMLTELI-ASKNLLNGM 199 (429)
Q Consensus 134 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~l~~~ 199 (429)
..++.|+.|++++|.++.+|..++.+++|+.|++++|. .....+..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45667777777777777777777777777777765442 2223334456666777766 444433211
Q ss_pred Cc------ccc--CCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccch
Q 014200 200 PE------TIG--SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271 (429)
Q Consensus 200 ~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 271 (429)
+. .+. ....|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.+++++..
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l 504 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 504 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCccc
Confidence 10 000 01247778888887777765 7777788888888887777777777778888888887777776633
Q ss_pred hhccccCEEEccCCCCCCC--CccccCCCCCCEEEccCCCCCCc
Q 014200 272 ACQLRLSVLDLSNNSLSGL--PPEIGKMTTLRKLLLTGNPLRTL 313 (429)
Q Consensus 272 ~~~~~L~~l~l~~n~l~~l--~~~l~~~~~L~~L~l~~~~i~~~ 313 (429)
....+|+.|++++|.++++ |..+..+++|+.|++++|+++++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 3334577777777777775 66677777777777777766543
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=4.6e-16 Score=143.58 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=62.1
Q ss_pred cCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC-ccccCCccCC-eEeccCCcCccC-CccccccCCCcEE
Q 014200 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLI-RLDLHQNRILSI-PSSISGCCSLAEF 235 (429)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~-~L~l~~~~~~~~-~~~~~~~~~L~~L 235 (429)
+++|+.+++++|.+..++...|.++.+|+++++.++ ++.++ ..|..+++|+ .+.+.+ .+..+ +.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777666666666666666666777766665 54443 3456666666 666666 44444 3566666666666
Q ss_pred EcCCCCCCccCh-hhcCCCCCCEEE
Q 014200 236 YMGNNALSALPA-ELGKLSKLGTLD 259 (429)
Q Consensus 236 ~l~~n~i~~~~~-~~~~~~~L~~L~ 259 (429)
+++.+.++.++. +|..+++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 666666666533 566666666654
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=7e-15 Score=139.15 Aligned_cols=322 Identities=13% Similarity=0.181 Sum_probs=211.5
Q ss_pred hHHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCC
Q 014200 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKL 80 (429)
Q Consensus 2 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i 80 (429)
+.||.+|++|+.+.+.. +++.|+..+|.+ |.+|+.+++..+ ++.++. .|.+|++|+.+.+..+ +
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~------------c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFEN------------CSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTT------------CTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhC------------CCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence 35788899999999974 478888888775 788999999754 777765 6899999998877654 4
Q ss_pred CCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccC-Cccc
Q 014200 81 SELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDL 156 (429)
Q Consensus 81 ~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l 156 (429)
..+. .+|.++..+....... +..+ ...|.++.+|+.+.+..+ +..++ ..+..+++|+.+.+..+ ++.+ ...+
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F 204 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCF 204 (394)
T ss_dssp CEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred eeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhh
Confidence 4443 3666665444333222 2222 245778888888888754 34443 45677788888887665 3333 3456
Q ss_pred cccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEE
Q 014200 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236 (429)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 236 (429)
..+..|+.+.+..+. ..+... ......++.+.+....-..-...+..+..++.+.+..+...-...++..+..++.+.
T Consensus 205 ~~~~~L~~i~~~~~~-~~i~~~-~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 205 AECILLENMEFPNSL-YYLGDF-ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTCTTCCBCCCCTTC-CEECTT-TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred ccccccceeecCCCc-eEeehh-hcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceec
Confidence 777788877765442 222222 334456777776543221112345677788888887665544456677888888777
Q ss_pred cCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCc
Q 014200 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTL 313 (429)
Q Consensus 237 l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~ 313 (429)
.....+. ...+..+.+|+.+.+..+ ++.+...++. .+|+.+++..+ ++.+ ..+|.+|.+|+.+.+..+ ++.+
T Consensus 283 ~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 283 YGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp ECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred cCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 6554322 235677888888888654 5555555543 34888888643 6665 456889999999999776 7888
Q ss_pred cccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEE
Q 014200 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385 (429)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L 385 (429)
+...|.+. .+|+.+++..+ +..+..++.+|++|+.+
T Consensus 358 ~~~aF~~C-----------------------------------~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGC-----------------------------------INLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTC-----------------------------------TTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred hHHHhhCC-----------------------------------CCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 87777763 47888888643 44455567788888764
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=127.66 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=100.9
Q ss_pred CEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCC
Q 014200 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (429)
Q Consensus 256 ~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (429)
+.++++++.++.++.. .+.++++|++++|.++.+|..+.++++|+.|++++|.+++++...|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~--------------- 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN--------------- 76 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC---------------
Confidence 4566666666665543 234577888888888878777888888888888888887776554443
Q ss_pred CCcccccCChhhHHhhhhccccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccC
Q 014200 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLV 413 (429)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~ 413 (429)
.++|++|++++|.|+.++. .+..+++|++|+|++|+|+.+|. .+..+++|++|+ ++
T Consensus 77 --------------------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~ 134 (193)
T 2wfh_A 77 --------------------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA--IG 134 (193)
T ss_dssp --------------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--CC
T ss_pred --------------------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE--eC
Confidence 2477888888888887664 56688999999999999998665 577889999999 99
Q ss_pred CCccccccccccccc
Q 014200 414 TNKESCISGCYLYWN 428 (429)
Q Consensus 414 ~n~i~~i~~~~~~~~ 428 (429)
+|++.| +|-+.|.
T Consensus 135 ~N~~~C--~c~l~~l 147 (193)
T 2wfh_A 135 ANPLYC--DCNMQWL 147 (193)
T ss_dssp SSCEEC--SGGGHHH
T ss_pred CCCeec--CCcCHHH
Confidence 999988 6777764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.2e-15 Score=127.57 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=34.8
Q ss_pred ccccccccCCccccCCh-hhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200 358 TSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 358 ~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+|+.|++++|+++.++. .+..+++|++|++++|++++ .|..+..+++|++|+ +++|++++
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~c 140 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN--LASNPFNC 140 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE--CTTCCBCC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE--eCCCCccC
Confidence 44555555555553332 24456666666666666666 455566666666666 66666665
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.3e-15 Score=126.14 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCCEEECCCCCCC--CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCc-CCccccCCCCCCEEEcC
Q 014200 69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKAS 145 (429)
Q Consensus 69 ~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~ 145 (429)
+|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 3444444444433 3333334444444444444444333 333344444444444444443 33333334444444444
Q ss_pred CCccccCC--ccccccCCCcEEEccCCcccccCh---hhhhcccccceeecCCccCCcCC
Q 014200 146 NNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGMP 200 (429)
Q Consensus 146 ~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~ 200 (429)
+|.++.++ ..+..+++|+.|++++|.+...+. ..+..+++|+++++++|...++|
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 44444332 334444455555555554444443 23444555555555555544443
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=8.1e-14 Score=131.42 Aligned_cols=207 Identities=15% Similarity=0.245 Sum_probs=92.6
Q ss_pred CCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEec
Q 014200 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC 121 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l 121 (429)
..++.+.+. +.++.|+. +|.++ +|+.+.+..+ ++.++. +|.++ +|+.+.+.. .+..++ ..|.+|++|+.+++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 344444443 23444433 34443 4555555443 444433 44443 455555543 333332 23455555555555
Q ss_pred CCCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC-
Q 014200 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM- 199 (429)
Q Consensus 122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 199 (429)
+.+++..++.....+.+|+.+.+..+ ++.++ ..|..+++|+.+++..+ +..++..+|.+ .+|+.+.+.. .++.+
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEC
Confidence 55555555444434455555555432 33222 23445555555555432 44444444444 3455554422 23222
Q ss_pred CccccCCccCCeEeccCCcCc-----cC-CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECC
Q 014200 200 PETIGSLSRLIRLDLHQNRIL-----SI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (429)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~-----~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~ 261 (429)
...+..+++|+.+.+.++.+. .+ +.+|.+|++|+.+.+.+ .++.+ ..+|..|.+|+.+.+.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 233444455555555444332 12 23445555555555542 24333 2234445555555553
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.2e-14 Score=135.27 Aligned_cols=255 Identities=14% Similarity=0.259 Sum_probs=178.0
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-h
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~ 86 (429)
..++.+.+.. +++.|+..+|.+ + +|+.+.+..+ ++.++. +|.++ +|+.+.+.+ .++.++. +
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~------------~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a 175 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRN------------S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI 175 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTT------------C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST
T ss_pred CCccEEEECC-ccCEehHhhccc------------C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH
Confidence 3445555543 456676666664 4 5888888654 776665 57764 688888875 5666654 7
Q ss_pred hhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcE
Q 014200 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSK 164 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~ 164 (429)
|.+|++|+.+++..|.+..++.....+.+|+.+.+..+ +..++ ..+..|++|+.+.+..+ ++.++. .|.. .+|+.
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 88888888888888888877766555788888888744 66664 35778888888888764 444433 3444 68888
Q ss_pred EEccCCcccccChhhhhcccccceeecCCccCC-----cC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEc
Q 014200 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----GM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYM 237 (429)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l 237 (429)
+.+. +.+..++...|.+|++|+.+.+.++... .+ +..+..+++|+.+.+.. .+..+ ..+|.+|.+|+.+.+
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 8884 4577777777888888888888777654 23 45677888888888884 45555 467888888998888
Q ss_pred CCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhc---cccCEEEccCCCC
Q 014200 238 GNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ---LRLSVLDLSNNSL 287 (429)
Q Consensus 238 ~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~L~~l~l~~n~l 287 (429)
..+ ++.+ ..+|..+ +|+.+++.+|....+....+. ..++.+++..+.+
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 654 6655 4567888 899999988877665544332 3467777765543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3e-15 Score=123.92 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=96.3
Q ss_pred cCCccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc-CCccccCCCCcCEEe
Q 014200 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFD 120 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~ 120 (429)
.+++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356777777777777 6776677777777788777777766 666777777778877777776 555566677777787
Q ss_pred cCCCCCCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEccCCcccccC
Q 014200 121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVEGNKLTVLS 176 (429)
Q Consensus 121 l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~ 176 (429)
+++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777777665 566777777777777777776665 5677777777777777665544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=1.9e-15 Score=153.60 Aligned_cols=120 Identities=30% Similarity=0.396 Sum_probs=95.2
Q ss_pred CccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchh
Q 014200 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272 (429)
Q Consensus 193 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 272 (429)
.+.+...+..+..++.|+.|++++|.+..++..+..+++|++|+|++|.++.+|..+..+++|+.|++++|.++.++...
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 34444446667788889999999999888887777889999999999999988888999999999999999998876654
Q ss_pred hc-cccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200 273 CQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (429)
Q Consensus 273 ~~-~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~ 312 (429)
.. .+|++|+|++|.++.+|..+.++++|+.|++++|.++.
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 44 34999999999999999999999999999999999854
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.6e-15 Score=120.17 Aligned_cols=123 Identities=23% Similarity=0.287 Sum_probs=71.4
Q ss_pred CCccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc-CCccccCCCCcCEEec
Q 014200 45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC 121 (429)
Q Consensus 45 ~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~l 121 (429)
+++++|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666666665 5555556666666666666666655 555566666666666666654 4444555666666666
Q ss_pred CCCCCCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEcc
Q 014200 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE 168 (429)
Q Consensus 122 ~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~ 168 (429)
++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666655443 445555555555555555554443 34455555555543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.6e-15 Score=123.76 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=92.7
Q ss_pred CcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccc-cCCCCcC
Q 014200 39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALV 117 (429)
Q Consensus 39 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~-~~~~~L~ 117 (429)
..+..+.++++|++++|.++.++......++|+.|++++|.++.+ +.+..+++|++|++++|.+..+|+.+ ..+++|+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345556777888888777777654333334778888888777766 56677777777777777777766543 6777777
Q ss_pred EEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCCcc----ccccCCCcEEEccCCccc
Q 014200 118 KFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLT 173 (429)
Q Consensus 118 ~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~ 173 (429)
+|++++|.+..+|. .+..+++|++|++++|.+..++.. +..+++|+.+++++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777776665 566777777777777777766653 666677777777666543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=121.48 Aligned_cols=123 Identities=22% Similarity=0.326 Sum_probs=57.2
Q ss_pred EEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCC
Q 014200 49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLK 127 (429)
Q Consensus 49 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~ 127 (429)
+++++++.++.+|..+. +++++|++++|.++.+|..+.++++|++|++++|.++.++. .+.++++|++|++++|++.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 34444444444443221 34444444444444444444444444444444444444432 2444444445555444444
Q ss_pred cCCc-cccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCccc
Q 014200 128 ELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT 173 (429)
Q Consensus 128 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 173 (429)
.++. .+..+++|++|++++|.++.++. .+..+++|+.+++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 4432 34444555555555555554433 2444555555555555543
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.2e-14 Score=134.10 Aligned_cols=254 Identities=15% Similarity=0.140 Sum_probs=157.5
Q ss_pred cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhC--------CCCCcEeecCCCcCccCCc-cccCC
Q 014200 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGE--------LHMLKSLDVSFNSIMKIPD-EIGSA 113 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~--------l~~L~~L~l~~~~i~~l~~-~~~~~ 113 (429)
+++|++|+|++|.+......-..++.++.+.+..+ .+|+ +|.+ +++|+.+++.+ .++.+++ .|.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 45677777777766622111112222333444433 3433 6777 89999999888 7777754 47888
Q ss_pred CCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCcc----ccC-CccccccCCCc-EEEccCCcccccChhhhhc---c
Q 014200 114 TALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCI----TSL-PEDLADCSKMS-KLDVEGNKLTVLSNNLIAS---W 183 (429)
Q Consensus 114 ~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~----~~~-~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~---~ 183 (429)
++|++++++.+.+..++. .+..+.++..+....... ..+ ...|..+..|+ .+.+... ..++...+.. .
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQP 201 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT--CCHHHHHHHTTCCG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC--CcHHHHHhhcccCc
Confidence 999999998888876654 566666666665544221 111 22355666676 4544322 1222221211 3
Q ss_pred cccceeecCCccCCcCCccc-cCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCCCCccC-hhhcCCCCCC-EEE
Q 014200 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLG-TLD 259 (429)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~-~L~ 259 (429)
.++..+.+.+.-...-...+ ..+++|+.+++++|.+..++ .+|.+|++|+++++.+| ++.++ .+|..+++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 34444544443211101111 23678888888888888775 56888888888888887 77664 4688888898 888
Q ss_pred CCCCcCccccchhhcc--ccCEEEccCCCCCCCCc-cccCCCCCCEEEc
Q 014200 260 LHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP-EIGKMTTLRKLLL 305 (429)
Q Consensus 260 l~~n~l~~~~~~~~~~--~L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l 305 (429)
+.+ .++.+....+.. +|+.+++.+|.++.++. +|.+|++|+.++.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888 777776665543 48889988888888754 6889999998864
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3e-14 Score=120.56 Aligned_cols=124 Identities=18% Similarity=0.326 Sum_probs=63.2
Q ss_pred cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch--hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCC
Q 014200 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (429)
Q Consensus 48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~--~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~ 124 (429)
+++++++++++.+|..+.. ++++|++++|.++.++. .+..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4445555555544443321 45555555555544432 245555555555555555544 334555555555555555
Q ss_pred CCCcCCc-cccCCCCCCEEEcCCCccccC-CccccccCCCcEEEccCCccc
Q 014200 125 QLKELPS-SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLT 173 (429)
Q Consensus 125 ~l~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 173 (429)
++..++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5554432 244555555555555555532 444555666666666666554
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.3e-14 Score=117.47 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=93.1
Q ss_pred CCCCCCEEECCCCCCC--CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCc-CCccccCCCCCCEE
Q 014200 66 NLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDF 142 (429)
Q Consensus 66 ~~~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L 142 (429)
..++++.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467888888888877 6777777888888888888887776 667778888888888888776 66656667788888
Q ss_pred EcCCCccccCC--ccccccCCCcEEEccCCcccccCh---hhhhcccccceeecC
Q 014200 143 KASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIAS 192 (429)
Q Consensus 143 ~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 192 (429)
++++|.++.++ ..+..+++|+.|++++|.++..+. ..+..+++|+.++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888777653 567777777788877777776655 446666666666654
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.55 E-value=3.3e-13 Score=127.59 Aligned_cols=315 Identities=11% Similarity=0.195 Sum_probs=174.2
Q ss_pred CccCChhhhhhhccccCCCcccccC-CccEEEcCCCCCCccch-hccCCCCCCEEECCCCC---CCCcch-hhhCCCCCc
Q 014200 21 LRDVPNEVYKNFDEAGEGDKWWEAV-DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK---LSELPA-AIGELHMLK 94 (429)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~---i~~~~~-~l~~l~~L~ 94 (429)
+++|++.+|.. |+ .|+.+.+.. .++.|.+ +|.+|.+|+.+.+..+. ++.++. +|.++.+|+
T Consensus 51 Vt~Ig~~aF~~------------~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~ 117 (394)
T 4gt6_A 51 VSKIGDRVFCN------------YKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELT 117 (394)
T ss_dssp EEEECTTTTTT------------CCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCC
T ss_pred eeEcCHhhccC------------CCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccce
Confidence 44566666654 53 488888864 4676755 68888888888887653 555644 788888888
Q ss_pred EeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcc
Q 014200 95 SLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172 (429)
Q Consensus 95 ~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 172 (429)
.+.+..+ +..++ ..+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+.........|+.+.+..+ .
T Consensus 118 ~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~ 193 (394)
T 4gt6_A 118 DIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-V 193 (394)
T ss_dssp BCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-C
T ss_pred eeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-c
Confidence 8877654 44443 34677888888888654 34443 45677888888888654 3333333233467888887544 4
Q ss_pred cccChhhhhcccccceeecCCccCCcCCccc--------------cCCccCCeEeccCCcCccCCccccccCCCcEEEcC
Q 014200 173 TVLSNNLIASWTMLTELIASKNLLNGMPETI--------------GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238 (429)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 238 (429)
..+....+..+..+................+ .....+..+.+...-..-...+|..|..|+.+.+.
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECC
T ss_pred cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecc
Confidence 4455555677777766665544332221111 01112222222211111112345555555555554
Q ss_pred CCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccc
Q 014200 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSL 317 (429)
Q Consensus 239 ~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~ 317 (429)
.+..+--..++..+++|+.+.+.. .++.+ ..+|.+|.+|+.+.+.++ ++.++...
T Consensus 274 ~~~~~I~~~aF~~c~~L~~i~l~~-----------------------~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 274 DSVVSIGTGAFMNCPALQDIEFSS-----------------------RITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCT-----------------------TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred cccceecCcccccccccccccCCC-----------------------cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 332211123345555555555431 23333 234667777777777653 66666665
Q ss_pred cCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCC
Q 014200 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELP 396 (429)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~ 396 (429)
|.+. .+|+.+.+..+ ++.+.+ ++.+|.+|+.+++.++....
T Consensus 330 F~~C-----------------------------------~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-- 371 (394)
T 4gt6_A 330 FAGC-----------------------------------EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-- 371 (394)
T ss_dssp TTTC-----------------------------------TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--
T ss_pred hhCC-----------------------------------CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--
Confidence 5552 46677777543 555544 44478888888888764322
Q ss_pred hhhcccccceeeccccCCCc
Q 014200 397 PELSSCASLQVKFSDLVTNK 416 (429)
Q Consensus 397 ~~l~~l~~L~~L~~~l~~n~ 416 (429)
..+..+..|+.+. +..+.
T Consensus 372 ~~~~~~~~L~~i~--i~~~~ 389 (394)
T 4gt6_A 372 NAISTDSGLQNLP--VAPGS 389 (394)
T ss_dssp HTCBCCCCC-----------
T ss_pred hhhhccCCCCEEE--eCCCC
Confidence 3456677777777 66554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.6e-14 Score=117.66 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=101.5
Q ss_pred hccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccc-cCCCCCCE
Q 014200 63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSD 141 (429)
Q Consensus 63 ~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~ 141 (429)
.+..+++|+.|++++|.++.++......++|++|++++|.+..+ +.+..+++|++|++++|.+..+|..+ ..+++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 36678889999999998888765444445899999999988877 56788888999999888888776544 77888888
Q ss_pred EEcCCCccccCCc--cccccCCCcEEEccCCcccccChh---hhhcccccceeecCCccC
Q 014200 142 FKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLL 196 (429)
Q Consensus 142 L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l 196 (429)
|++++|.++.++. .+..+++|+.|++++|.+..++.. .+..+++|+.+++++|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888877765 677788888888888877766543 356666677777666654
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=3.7e-12 Score=120.37 Aligned_cols=307 Identities=11% Similarity=0.197 Sum_probs=193.1
Q ss_pred CCccch-hccCCC-CCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCc---CccCC-ccccCCCCcCEEecCCCCCCcC
Q 014200 57 IEKLKE-DLRNLP-LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS---IMKIP-DEIGSATALVKFDCSSNQLKEL 129 (429)
Q Consensus 57 i~~l~~-~~~~~~-~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~---i~~l~-~~~~~~~~L~~L~l~~~~l~~~ 129 (429)
++.|.+ +|.+++ .|+.+.+..+ ++.+.+ +|.+|.+|+.+.+..+. ++.+. .+|.++.+|+.+.+..+ +..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 445654 688885 5999999754 777755 89999999999997653 55564 34788999999888654 5555
Q ss_pred C-ccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCcc
Q 014200 130 P-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208 (429)
Q Consensus 130 ~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 208 (429)
+ ..+..+.+|+.+.+..+...--...+..+..|+.+.+..+ +..++..++.. ..|+.+.+..+....-...+..+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccc
Confidence 4 4678899999999976533323346788999999999654 66677665654 5788888866543333345667777
Q ss_pred CCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCC
Q 014200 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNS 286 (429)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~ 286 (429)
++...........+...+..........+. .+.....+..+.+.. .+..+....+. ..|+.+.+..+.
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALI---------RYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEE---------ECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC
T ss_pred cceecccccccccccceeeccccccccccc---------ccccccccceEEcCC-cceEcccceeeecccccEEeccccc
Confidence 777776655444333222111111100000 000111122222211 11111111111 124444443321
Q ss_pred CCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccC
Q 014200 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366 (429)
Q Consensus 287 l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 366 (429)
.+--...+.+|++|+.+.+. +.++.++...|.+. .+|+.+++..
T Consensus 277 ~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c-----------------------------------~~L~~i~lp~ 320 (394)
T 4gt6_A 277 VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGC-----------------------------------ISLKSIDIPE 320 (394)
T ss_dssp CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC-----------------------------------TTCCEEECCT
T ss_pred ceecCcccccccccccccCC-CcccccCceeecCC-----------------------------------CCcCEEEeCC
Confidence 11123467889999999996 56778887777663 5889999976
Q ss_pred CccccCCh-hhhccCCCcEEeCCCCccccCC-hhhcccccceeeccccCCCcc
Q 014200 367 MNLSAIPS-EIWEAGEITKLDLSRNSIQELP-PELSSCASLQVKFSDLVTNKE 417 (429)
Q Consensus 367 ~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~-~~l~~l~~L~~L~~~l~~n~i 417 (429)
+ ++.+.+ ++..|.+|+++.|..+ ++.+. .++.+|++|++++ +.++..
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~--~~~~~~ 369 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE--YSGSRS 369 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE--ESSCHH
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE--ECCcee
Confidence 4 666644 5568999999999755 77754 5788999999999 988754
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=4.5e-13 Score=111.72 Aligned_cols=124 Identities=22% Similarity=0.358 Sum_probs=58.5
Q ss_pred cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCC
Q 014200 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQ 125 (429)
Q Consensus 48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~ 125 (429)
+.+++++++++.+|..+ .++|+.|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444444322 1344444444444444432 334445555555555544444332 3444555555555555
Q ss_pred CCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCccc
Q 014200 126 LKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173 (429)
Q Consensus 126 l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~ 173 (429)
++.++.. +..+++|++|++++|.++.++.. +..+++|+.+++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5444332 34445555555555555544433 344556666666666544
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=4.2e-13 Score=111.88 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=31.9
Q ss_pred ccccccccCCccccCChh-hhccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccc
Q 014200 358 TSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 358 ~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+|+.|++++|.++.++.. +..+++|++|++++|+++++|.. +..+++|++|+ +++|++++
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--l~~N~~~~ 138 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--CCSSCBCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE--ecCCCeec
Confidence 445555555555544433 33455566666666655554433 34555566666 66665555
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=6.4e-15 Score=125.40 Aligned_cols=117 Identities=30% Similarity=0.341 Sum_probs=75.6
Q ss_pred CCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccC
Q 014200 56 NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGR 135 (429)
Q Consensus 56 ~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 135 (429)
.++.+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++++|++..+| .+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 34455556666777777777777766666 666677777777777766666665555666777777766666654 4555
Q ss_pred CCCCCEEEcCCCccccCCc--cccccCCCcEEEccCCcccc
Q 014200 136 CLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV 174 (429)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~ 174 (429)
+++|++|++++|.++.++. .+..+++|+.+++++|.+..
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 6666777776666665432 45666667777776666543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=3.9e-15 Score=126.71 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=119.9
Q ss_pred HHHhhhcCeeeccCCCCc-cCCh-----hhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCC
Q 014200 5 LKAARTSGSLNLSNRSLR-DVPN-----EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHN 78 (429)
Q Consensus 5 ~~~~~~l~~L~l~~~~l~-~~~~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~ 78 (429)
+.....++.++++++.+. .+|. ..+. .+++|++|++++|.++.+| .+..+++|+.|++++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~------------~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS------------TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH------------HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh------------cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC
Confidence 455566777777776664 2222 1233 3788999999999999988 8899999999999999
Q ss_pred CCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCC-c-
Q 014200 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLP-E- 154 (429)
Q Consensus 79 ~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~- 154 (429)
.++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..++. .+..+++|++|++++|.+...+ .
T Consensus 81 ~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 81 LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 99999988888999999999999999876 58889999999999999997654 6889999999999999886432 1
Q ss_pred ---------cccccCCCcEEE
Q 014200 155 ---------DLADCSKMSKLD 166 (429)
Q Consensus 155 ---------~l~~~~~L~~L~ 166 (429)
.+..+++|+.|+
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC
T ss_pred cchHHHHHHHHHhCCCcEEEC
Confidence 256677787776
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.2e-12 Score=106.98 Aligned_cols=62 Identities=26% Similarity=0.440 Sum_probs=33.1
Q ss_pred ccccccccCCccccCChhh-hccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccccc
Q 014200 358 TSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCIS 421 (429)
Q Consensus 358 ~L~~l~l~~~~i~~~~~~~-~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~ 421 (429)
+|+.|++++|+|+.+|... ..+++|++|+|++|+|+++|.. +..+++|++|+ +++|++.+.|
T Consensus 58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~--L~~N~~~c~~ 121 (174)
T 2r9u_A 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY--LYNNPWDCEC 121 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSCBCTTB
T ss_pred CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE--eCCCCccccc
Confidence 4444444444444444433 3555566666666666554443 55556666666 6666665544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.7e-12 Score=106.14 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=34.8
Q ss_pred ccccccccCCccccCChhh-hccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccc
Q 014200 358 TSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCI 420 (429)
Q Consensus 358 ~L~~l~l~~~~i~~~~~~~-~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i 420 (429)
+|+.|++++|+|+.++... ..+++|++|+|++|+|+++|. .+..+++|++|+ +++|++++.
T Consensus 55 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~~~c~ 117 (170)
T 3g39_A 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW--LLNNPWDCA 117 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCBCTT
T ss_pred cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE--eCCCCCCCC
Confidence 4455555555555554433 356666666666666666443 355666666666 666666653
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=5.6e-12 Score=104.55 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=68.7
Q ss_pred cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCC
Q 014200 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQ 125 (429)
Q Consensus 48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~ 125 (429)
+.+++++++++.+|..+. ++|++|++++|.++.+ |..|.++++|++|++++|.+..+|.. +.++++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566666666666665443 5677777777776655 34666777777777777777666554 4667777777777777
Q ss_pred CCcCCcc-ccCCCCCCEEEcCCCccccCC
Q 014200 126 LKELPSS-LGRCLNLSDFKASNNCITSLP 153 (429)
Q Consensus 126 l~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 153 (429)
+..++.. +..+++|++|++++|.+...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 7766553 666677777777777666443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=5e-12 Score=104.47 Aligned_cols=102 Identities=21% Similarity=0.309 Sum_probs=56.4
Q ss_pred ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN 124 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~ 124 (429)
.++++++++.++.+|..+. ++|+.|++++|.++.+ |..|.++++|++|++++|.+..++.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3455555555555554332 4555555555555554 33455556666666666555555443 355566666666666
Q ss_pred CCCcCCc-cccCCCCCCEEEcCCCccc
Q 014200 125 QLKELPS-SLGRCLNLSDFKASNNCIT 150 (429)
Q Consensus 125 ~l~~~~~-~~~~~~~L~~L~l~~~~~~ 150 (429)
++..++. .+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6555544 3555566666666666554
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=3.6e-10 Score=106.13 Aligned_cols=138 Identities=12% Similarity=0.166 Sum_probs=87.1
Q ss_pred hhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCE
Q 014200 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGT 257 (429)
Q Consensus 180 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~ 257 (429)
+..+..++.+.+..+--..-...+..+..|+.+.+..+ ++.+ ..++..+.+++.+.+..+ ++.++ .+|..|.+|+.
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 44455566655544321112234556677777777654 3333 356777777887777543 44443 45777888888
Q ss_pred EECCCCcCccccchhhcc--ccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCC
Q 014200 258 LDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321 (429)
Q Consensus 258 L~l~~n~l~~~~~~~~~~--~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 321 (429)
+.+.++.++.+....+.. +|+.+++..+ ++.+ ..+|.+|++|+.+.+..+ ++.++...|.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 888777777666655543 4888887543 5555 345788888888888654 777777777764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=121.27 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=102.0
Q ss_pred CccCCeEeccCCcCccC-----Ccccc-ccCCCcEEEcCCCCCCc--cChhhcCCCCCCEEECCCCcCccccchhh----
Q 014200 206 LSRLIRLDLHQNRILSI-----PSSIS-GCCSLAEFYMGNNALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEAC---- 273 (429)
Q Consensus 206 ~~~L~~L~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---- 273 (429)
.+.++.|++++|.++.. ...+. .+++|++|++++|.++. +......+++|+.|++++|.++.......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35688899998888732 12222 33688889998888873 22223345578888888888874332221
Q ss_pred ---ccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCCh
Q 014200 274 ---QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (429)
Q Consensus 274 ---~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (429)
..+|++|++++|.+++ +...+..+++|+.|++++|.+++.+. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----------~------------------ 201 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----------E------------------ 201 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----------H------------------
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----------H------------------
Confidence 2458888888888765 34455777888888888887743210 0
Q ss_pred hhHHhhhhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc
Q 014200 346 EDLITMATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE 394 (429)
Q Consensus 346 ~~~~~~~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~ 394 (429)
.+......+++|+.|++++|.|+ .+...+..+++|++|||++|.|++
T Consensus 202 --~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 202 --LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp --HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred --HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 01112223457888888888877 344555567888888888888775
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=1.2e-09 Score=102.53 Aligned_cols=259 Identities=12% Similarity=0.129 Sum_probs=126.7
Q ss_pred ccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEe
Q 014200 43 EAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (429)
Q Consensus 43 ~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~ 120 (429)
...+|+.+.+. ..++.|++ +|.+|.+|+.+.+..+ ++.++. +|.++ +|+.+.+..+ +..+++......+|+.+.
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEE
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccccc
Confidence 35678888886 35777765 5888888888888644 666654 77776 6777776543 555544433334788888
Q ss_pred cCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC
Q 014200 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (429)
Q Consensus 121 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 200 (429)
+..+ +..+........+++.+.+..+--..-...+..+..++.+.+............. .... .....
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~ 187 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LYNK----------NKTIL 187 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EEET----------TSSEE
T ss_pred CCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccce-eccc----------cccee
Confidence 8654 3444443333345666655443221122345666777777665443221111000 0000 00001
Q ss_pred ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhc--ccc
Q 014200 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRL 277 (429)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L 277 (429)
..+.....+..+.+..........++..+..++.+.+..+ ++.+ ..++..+..|+.+.+..+ ++.+....+. ..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 1122223333333333222222334444555555555332 2222 233445555555555443 3333322222 124
Q ss_pred CEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCC
Q 014200 278 SVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (429)
Q Consensus 278 ~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 320 (429)
+.+.+..+ ++.+ ...+.+|++|+.+.+.++.++.++...|.+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 55554322 3332 224556666666666666666665555544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=120.85 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=76.6
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc--cchhccCCCCCCEEECCCCCCCCcc--
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK--LKEDLRNLPLLTVLNVSHNKLSELP-- 84 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~i~~~~-- 84 (429)
+.++.|++++|.++..+...+..... ..+++|++|++++|.++. +......+++|+.|++++|.++...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLG-------SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHS-------SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHh-------hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 45666666666655443333322100 012456666666665542 1111223345666666666655221
Q ss_pred ---hhh-hCCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCCCCc-----CCccccCCCCCCEEEcCCCccc
Q 014200 85 ---AAI-GELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (429)
Q Consensus 85 ---~~l-~~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (429)
..+ ...++|++|++++|.++. ++..+..+++|++|++++|.+.. ++..+...++|++|++++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 122 234556666666665542 23334455566666666665542 2233444455555555555554
Q ss_pred c-----CCccccccCCCcEEEccCCccccc
Q 014200 151 S-----LPEDLADCSKMSKLDVEGNKLTVL 175 (429)
Q Consensus 151 ~-----~~~~l~~~~~L~~L~l~~~~~~~~ 175 (429)
. ++..+..+++|++|++++|.++..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 1 222333445555555555555443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=7.7e-11 Score=109.35 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=80.0
Q ss_pred CEEEccCC-CCCCCCccccCCCCCCEEEccC-CCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200 278 SVLDLSNN-SLSGLPPEIGKMTTLRKLLLTG-NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (429)
Q Consensus 278 ~~l~l~~n-~l~~l~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (429)
..++.+++ .++.+|. +..+++|+.|++++ |.++.++...|.+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~----------------------------------- 54 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG----------------------------------- 54 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS-----------------------------------
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc-----------------------------------
Confidence 34577776 7777777 77778888888885 8887776554443
Q ss_pred ccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccccccc
Q 014200 356 SVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 356 ~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
.++|+.|+|++|+|+.++. .+..+++|++|+|++|+|+++|........|++|+ +.+|++.+ +|-+.|.
T Consensus 55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~--l~~N~~~c--~c~l~~~ 124 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV--LSGNPLHC--SCALRWL 124 (347)
T ss_dssp CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEE--CCSSCCCC--CGGGHHH
T ss_pred ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEE--eeCCCccC--CCccHHH
Confidence 2477888888888886544 55678888888888888888666544433488888 88888888 5666653
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=2.3e-09 Score=99.34 Aligned_cols=83 Identities=24% Similarity=0.304 Sum_probs=39.1
Q ss_pred CCccEEEcCC-CCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEec
Q 014200 45 VDLQKLILAH-NNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (429)
Q Consensus 45 ~~L~~L~l~~-~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l 121 (429)
++|++|+|++ |.++.++. .|..+++|+.|+|++|.++.++. .|.++++|++|++++|.+..+|........|++|++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence 3455555553 55554442 34555555555555555554432 445555555555555555544433222222555555
Q ss_pred CCCCCC
Q 014200 122 SSNQLK 127 (429)
Q Consensus 122 ~~~~l~ 127 (429)
.+|.+.
T Consensus 111 ~~N~~~ 116 (347)
T 2ifg_A 111 SGNPLH 116 (347)
T ss_dssp CSSCCC
T ss_pred eCCCcc
Confidence 444443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=2.5e-09 Score=98.89 Aligned_cols=176 Identities=10% Similarity=0.106 Sum_probs=85.1
Q ss_pred cCCccCCeEeccCCcCc----------cCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchh-
Q 014200 204 GSLSRLIRLDLHQNRIL----------SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA- 272 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~- 272 (429)
..+++|+.|.+...... .+...+..+|+|+.|.++++.-..++. +. +++|++|++..+.+..-....
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 34567777777543221 122334556677777776652123332 22 566777777666654221111
Q ss_pred ---hccccCEEEccC--CC------CCCCCccc--cCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcc
Q 014200 273 ---CQLRLSVLDLSN--NS------LSGLPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (429)
Q Consensus 273 ---~~~~L~~l~l~~--n~------l~~l~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (429)
..++|++|+|+. +. +.++...+ ..+|+|+.|.+.+|.+.+- ....
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-----------~~~~----------- 271 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-----------VVEM----------- 271 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-----------HHHH-----------
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-----------HHHH-----------
Confidence 124566666642 11 11121222 2356677777766655310 0000
Q ss_pred cccCChhhHHhhhhccccccccccccCCcccc-----CChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccC
Q 014200 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSA-----IPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLV 413 (429)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~-----~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~ 413 (429)
+.. ....++|++|+|++|.++. ++..+..+++|+.|+|++|.|++ ..+.+...- ...++ ++
T Consensus 272 ---------la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~--~~ 338 (362)
T 2ra8_A 272 ---------FLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKID--VS 338 (362)
T ss_dssp ---------HHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEE--CC
T ss_pred ---------HHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEE--ec
Confidence 000 0123566777777776662 34444556677777777776664 333333210 23455 66
Q ss_pred CCc
Q 014200 414 TNK 416 (429)
Q Consensus 414 ~n~ 416 (429)
++.
T Consensus 339 ~~~ 341 (362)
T 2ra8_A 339 DSQ 341 (362)
T ss_dssp SBC
T ss_pred CCc
Confidence 655
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=1.9e-09 Score=90.11 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=77.0
Q ss_pred cCCccEEEcCCC-CCC-----ccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCCcCcc-----CC
Q 014200 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP 107 (429)
Q Consensus 44 ~~~L~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~~i~~-----l~ 107 (429)
+++|++|++++| .+. .+...+...++|++|++++|.++. +...+...+.|++|++++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 677888888887 766 244456777888888888888773 34456677788888888887772 45
Q ss_pred ccccCCCCcCEEec--CCCCCCc-----CCccccCCCCCCEEEcCCCccc
Q 014200 108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (429)
Q Consensus 108 ~~~~~~~~L~~L~l--~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (429)
..+...++|++|++ ++|.+.. +...+...+.|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56677778888888 7777762 3445566678888888888765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=1.2e-08 Score=85.24 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=91.7
Q ss_pred cchhccCCCCCCEEECCCC-CCCC-----cchhhhCCCCCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCCc
Q 014200 60 LKEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKE 128 (429)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~-~i~~-----~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~~ 128 (429)
+...+...++|++|++++| .++. +...+...++|++|++++|.+. .++..+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4445788999999999999 8873 4456788899999999999887 245556777899999999999883
Q ss_pred -----CCccccCCCCCCEEEc--CCCcccc-----CCccccccCCCcEEEccCCcccc
Q 014200 129 -----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTV 174 (429)
Q Consensus 129 -----~~~~~~~~~~L~~L~l--~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~ 174 (429)
+...+...+.|++|++ ++|.++. +...+...++|++|++++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 4566777889999999 8888872 44566777899999999987753
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=4.9e-08 Score=90.25 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCccCCeEeccCCcCcc-----CCccccccCCCcEEEcCCCCCCc-cChhhcC-CCCCCEEECCCCc
Q 014200 205 SLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSA-LPAELGK-LSKLGTLDLHSNQ 264 (429)
Q Consensus 205 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~-~~~L~~L~l~~n~ 264 (429)
.+++|+.|+++.|.+.. ++..+..+++|+.|+++.|.++. ....+.. + ...+++++++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45778888888777763 23344567888888888887772 2222332 2 3446777665
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.10 E-value=2.1e-06 Score=71.20 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=68.1
Q ss_pred cCCccEEEcCCC-CCC-----ccchhccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCc-----cCC
Q 014200 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (429)
Q Consensus 44 ~~~L~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~-----~l~ 107 (429)
.+.|++|+++++ .+. .+.+.+.....|+.|+|++|.++ .+.+++...+.|++|++++|.|. .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456777777764 555 34445667777777777777776 33456667777888888777776 334
Q ss_pred ccccCCCCcCEEecCCCC---CC-----cCCccccCCCCCCEEEcCCCcc
Q 014200 108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCI 149 (429)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~---l~-----~~~~~~~~~~~L~~L~l~~~~~ 149 (429)
+.+...+.|++|+++++. +. .+...+...+.|+.|+++.+..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 556666678888886543 23 2334455666777777766543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=2.2e-06 Score=75.12 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=50.4
Q ss_pred cCCCCCCEEECCCCCCCCcc---hhhhCCCCCcEeecCCCcCccCCc--cccCCCCcCEEecCCCCCCc-CC-------c
Q 014200 65 RNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKE-LP-------S 131 (429)
Q Consensus 65 ~~~~~L~~L~l~~~~i~~~~---~~l~~l~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~l~~-~~-------~ 131 (429)
.++++|+.|++++|.+..++ ..+..+++|++|++++|.+..+.. .+..+ +|++|++.+|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 45677777777777776543 455677778888887777775522 23333 77788887777762 32 1
Q ss_pred cccCCCCCCEEE
Q 014200 132 SLGRCLNLSDFK 143 (429)
Q Consensus 132 ~~~~~~~L~~L~ 143 (429)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245667777764
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=2.1e-05 Score=68.94 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=71.3
Q ss_pred HhhhcCe--eeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc---hhccCCCCCCEEECCCCCCC
Q 014200 7 AARTSGS--LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLS 81 (429)
Q Consensus 7 ~~~~l~~--L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~l~~~~i~ 81 (429)
..+.|.. ++++.|....++..+ +.... .+++|++|+|++|.++.++ ..+..+++|+.|+|++|.+.
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l-~i~~~--------~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATL-RIIEE--------NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHH-HHHHH--------HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCcchhhcCccccCCHHHHHHHHH-HHHHh--------hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 3444554 667777655444322 11111 3678999999999988655 45678999999999999988
Q ss_pred Ccch--hhhCCCCCcEeecCCCcCc-cCCc-------cccCCCCcCEEec
Q 014200 82 ELPA--AIGELHMLKSLDVSFNSIM-KIPD-------EIGSATALVKFDC 121 (429)
Q Consensus 82 ~~~~--~l~~l~~L~~L~l~~~~i~-~l~~-------~~~~~~~L~~L~l 121 (429)
.+.+ .+..+ +|++|++++|.+. .+|+ .+..+++|+.|+-
T Consensus 210 ~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 210 SERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 7632 33444 8999999999886 3442 3567889988863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=2.8e-06 Score=69.10 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=57.8
Q ss_pred cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCC-CCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhh
Q 014200 275 LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (429)
Q Consensus 275 ~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (429)
..|++||+++|.+++. ...+.+|++|+.|++++|. +++ ..+..+.. .
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-----------~gL~~L~~--------------------~ 109 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-----------GCLERLSQ--------------------L 109 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-----------HHHHHHHT--------------------C
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-----------HHHHHHHh--------------------c
Confidence 3599999999998872 3456889999999999986 432 22222110 0
Q ss_pred hccccccccccccCCc-cc-cCChhhhccCCCcEEeCCCCc-ccc
Q 014200 353 TRLSVTSKELSLEGMN-LS-AIPSEIWEAGEITKLDLSRNS-IQE 394 (429)
Q Consensus 353 ~~~~~~L~~l~l~~~~-i~-~~~~~~~~~~~L~~L~ls~n~-i~~ 394 (429)
...+++|++|+|++|. |+ .-...+..+++|++|+|++|. +++
T Consensus 110 ~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred ccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 0013467888888874 66 233455677888888888874 665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=1.9e-05 Score=65.54 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=85.8
Q ss_pred chhccCCCCCCEEECCCC-CCCC-----cchhhhCCCCCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCC--
Q 014200 61 KEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK-- 127 (429)
Q Consensus 61 ~~~~~~~~~L~~L~l~~~-~i~~-----~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~-- 127 (429)
...+.+.+.|+.|+++++ .+.. +.+++...+.|+.|++++|.+. .+++.+...+.|++|+|++|.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334577889999999985 7773 4567888899999999999887 45566777889999999999988
Q ss_pred ---cCCccccCCCCCCEEEcCCC---ccc-----cCCccccccCCCcEEEccCCcc
Q 014200 128 ---ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGNKL 172 (429)
Q Consensus 128 ---~~~~~~~~~~~L~~L~l~~~---~~~-----~~~~~l~~~~~L~~L~l~~~~~ 172 (429)
.+...+...+.|++|+++++ .+. .+.+.+...+.|+.|+++.+..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34456677778999999865 333 2345577778999999987654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.85 E-value=1.5e-05 Score=61.79 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=53.8
Q ss_pred ccccccCCccc--cCChhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccccccccccc
Q 014200 360 KELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 360 ~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
..++.++++++ .+|..+ -++|++|+|++|+|+.+|. .+..+++|++|+ |.+|++.+ +|-+.|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~--L~~NP~~C--dC~l~~l 76 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAH--LGANPWRC--DCRLVPL 76 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEE--CCSSCCBC--SGGGHHH
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEE--ecCCCeec--cCccHHH
Confidence 57889999998 999654 3579999999999999765 467899999999 99999999 8888774
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.6e-05 Score=64.59 Aligned_cols=81 Identities=11% Similarity=0.214 Sum_probs=53.9
Q ss_pred cCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCc-Cccccchhh------ccccCEEEccCC-CCCC-CCccccCCC
Q 014200 229 CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQ-LKEYCVEAC------QLRLSVLDLSNN-SLSG-LPPEIGKMT 298 (429)
Q Consensus 229 ~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~------~~~L~~l~l~~n-~l~~-l~~~l~~~~ 298 (429)
...|++|++++|.++.. ...+..+++|++|++++|. +++...... ..+|++|++++| ++|+ -...+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34677777777776632 3345677788888888774 553222211 235899999887 4776 123467889
Q ss_pred CCCEEEccCCC
Q 014200 299 TLRKLLLTGNP 309 (429)
Q Consensus 299 ~L~~L~l~~~~ 309 (429)
+|+.|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999986
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.00098 Score=51.45 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred CCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcC
Q 014200 70 LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103 (429)
Q Consensus 70 L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i 103 (429)
|+.|+|++|.|+.++. .|..+++|++|++++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444444444444433 344444555555554443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.33 E-value=1.9 Score=30.96 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=19.4
Q ss_pred cCCccEEEcCCCCCCccch-hccCCCCCCEEECCCC
Q 014200 44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHN 78 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~ 78 (429)
|.+|+.+.+..+ ++.|.. +|.+|.+|+.+.+.+.
T Consensus 19 c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 19 NTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 566777666543 444433 4666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.11 E-value=3.5 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=17.6
Q ss_pred hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCC
Q 014200 63 DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSF 100 (429)
Q Consensus 63 ~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~ 100 (429)
.|.+|.+|+.+.+-.+ ++.+.. +|.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3555555555555432 333322 455555555555543
Done!