Query 014204
Match_columns 429
No_of_seqs 433 out of 1978
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:21:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3E-22 1E-26 155.9 6.7 61 108-176 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 3.2E-21 1.1E-25 150.1 5.9 60 210-270 2-62 (63)
3 1u3e_M HNH homing endonuclease 94.6 0.0028 9.6E-08 57.3 -2.2 88 156-252 55-146 (174)
4 3igm_B PF14_0633 protein; AP2 93.2 0.079 2.7E-06 42.2 4.0 24 104-127 3-26 (77)
5 3igm_B PF14_0633 protein; AP2 87.1 0.38 1.3E-05 38.3 2.9 28 206-235 3-30 (77)
6 1u3e_M HNH homing endonuclease 67.3 0.3 1E-05 43.8 -3.8 38 109-158 109-146 (174)
7 3eik_A Tata-box-binding protei 56.5 35 0.0012 32.0 8.1 134 108-258 76-212 (218)
8 2z8u_A Tata-box-binding protei 49.6 1.2E+02 0.0043 27.5 10.5 133 108-258 46-182 (188)
9 1ais_A TBP, protein (tata-bind 44.4 1.3E+02 0.0045 27.1 9.7 135 107-259 41-179 (182)
10 1z1b_A Integrase; protein-DNA 44.3 29 0.00099 32.6 5.6 42 110-164 14-55 (356)
11 1z1b_A Integrase; protein-DNA 40.2 32 0.0011 32.3 5.1 42 212-258 14-55 (356)
12 1mp9_A Tata-binding protein; t 38.7 1.3E+02 0.0046 27.4 8.9 134 108-259 46-183 (198)
13 3jtz_A Integrase; four strande 26.3 70 0.0024 25.4 4.2 37 222-258 37-75 (88)
14 1ytb_A Protein (tata binding p 22.9 2.4E+02 0.0081 25.4 7.5 134 108-258 38-174 (180)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.86 E-value=3e-22 Score=155.90 Aligned_cols=61 Identities=39% Similarity=0.847 Sum_probs=56.3
Q ss_pred ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCc
Q 014204 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLS 176 (429)
Q Consensus 108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~ 176 (429)
+||||++++| |||+|+|+++ ..+|++||||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~-gkw~A~I~~~-------~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCC-CcEEEEEccc-------cCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999999987 9999999984 23589999999999999999999999999999999999964
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.83 E-value=3.2e-21 Score=150.12 Aligned_cols=60 Identities=43% Similarity=0.711 Sum_probs=55.4
Q ss_pred ccccceeeccCceEEeeecccc-CCceeecCCCCcHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014204 210 VYRGVTRHHQHGRWQARIGRVA-GNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDIS 270 (429)
Q Consensus 210 ~yrGV~r~~~~gkW~A~Ir~~~-~~k~i~LGtF~t~EeAArAYD~Aa~~l~G~~a~~NFp~s 270 (429)
+||||++ +++|||+|+|+.+. +|+++|||+|+|+||||+|||.|+++++|..+.||||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999996 46999999999776 479999999999999999999999999999999999974
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.60 E-value=0.0028 Score=57.27 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=59.9
Q ss_pred HHHHHHHHhccccc---cccCCCc-chhhhHHHhhhhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeecccc
Q 014204 156 AYDLAALKYWGATT---HINFPLS-TYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVA 231 (429)
Q Consensus 156 AYD~Aal~~~G~~a---~~NFp~~-~yenEIeeLR~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~ 231 (429)
++.+.+..+.|... ..++-.. ...+.+++|+.++..|+..+...... . ..++||.+ ...++|.+.|. .
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~-~~~~k~~~vi~--~ 126 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQI-AKIKNQKPIIV--I 126 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHH-HHHHTCCCEEE--E
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeee-ccCCCCceEEE--E
Confidence 45556666666431 2233222 23568899999999999887655331 1 12578876 56678999883 4
Q ss_pred CCceeecCCCCcHHHHHHHHH
Q 014204 232 GNKDLYLGTFSTQEEAAEAYD 252 (429)
Q Consensus 232 ~~k~i~LGtF~t~EeAArAYD 252 (429)
+ +.++||.|++.+|||++|.
T Consensus 127 ~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 127 S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp C-TTSCEEEESCHHHHHHHHT
T ss_pred c-CCceEEeeCCHHHHHHHHC
Confidence 5 6778999999999999964
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.23 E-value=0.079 Score=42.22 Aligned_cols=24 Identities=25% Similarity=0.453 Sum_probs=21.1
Q ss_pred CCCcceeceeEecCCCeEEEEEec
Q 014204 104 QRTSQYRGVTRHRWTGRYEAHLWD 127 (429)
Q Consensus 104 ~~~S~yrGV~~~~~~grW~A~I~~ 127 (429)
...|+|+||+|.++.+.|.|+-.+
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e 26 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD 26 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec
Confidence 467899999999999999999865
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=87.15 E-value=0.38 Score=38.32 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCcccccceeeccCceEEeeeccccCCce
Q 014204 206 RGASVYRGVTRHHQHGRWQARIGRVAGNKD 235 (429)
Q Consensus 206 ~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~ 235 (429)
...|+|.||+|.+..+.|.|.-. .+|++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFY--DGASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEE--ETTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEe--cCCeE
Confidence 34689999999999999999974 44544
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=67.35 E-value=0.3 Score=43.82 Aligned_cols=38 Identities=5% Similarity=-0.124 Sum_probs=28.3
Q ss_pred eeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHH
Q 014204 109 YRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYD 158 (429)
Q Consensus 109 yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD 158 (429)
++||.+ +..++|.+.|.. + +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~----------~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVI----------S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEE----------C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEE----------c-CCceEEeeCCHHHHHHHHC
Confidence 467766 334678888843 4 5567899999999999874
No 7
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=56.51 E-value=35 Score=32.03 Aligned_cols=134 Identities=12% Similarity=0.124 Sum_probs=81.3
Q ss_pred ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCcchhhhHH--Hh
Q 014204 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELE--EM 185 (429)
Q Consensus 108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~~yenEIe--eL 185 (429)
+|-||..|-..-+-.+-||. .||-+..|. .++|+|..|.++.+..+....-...|+.-.-.+... +|
T Consensus 76 ~Fpglv~Rl~~Pk~t~LIF~----------SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl 144 (218)
T 3eik_A 76 RFAAVIMRIREPKTTALIFA----------SGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDI 144 (218)
T ss_dssp TCSSEEEEETTTTEEEEECT----------TSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEEC
T ss_pred cCceEEEEecCCcEEEEEEC----------CCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEC
Confidence 58899888777888999966 788888776 579999999998888775322222222100000000 00
Q ss_pred h-hhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHh
Q 014204 186 K-HMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 258 (429)
Q Consensus 186 R-~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l 258 (429)
. .+..++.....+... .=.-..|-||.++-..-|=...| ...||-+..|. .++||+..|++.-.-.|
T Consensus 145 ~f~I~Le~la~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 145 KFSIRLEGLAYAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp SSCBCHHHHHHHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 0 011111111111100 01124588888765666777888 57888888887 88999999998865444
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=49.58 E-value=1.2e+02 Score=27.46 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=76.3
Q ss_pred ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccc-cccCCCcchhhhHHH--
Q 014204 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATT-HINFPLSTYEKELEE-- 184 (429)
Q Consensus 108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a-~~NFp~~~yenEIee-- 184 (429)
+|-||..+-..-+=.+-||. .||-+--|. .++|+|..|-.+.+..+....- ...|+.-.-.+....
T Consensus 46 ~fpgli~Rl~~Pk~t~lIF~----------SGKiv~TGA-kS~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~ 114 (188)
T 2z8u_A 46 QFPGLVCRLSVPKVALLIFR----------SGKVNCTGA-KSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATAD 114 (188)
T ss_dssp ---CEEEEETTTTEEEEECT----------TSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEE
T ss_pred CcccEEEEcCCCcEEEEEeC----------CCeEEEecC-CCHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEe
Confidence 58899888877888888965 788877776 4667888888877666532211 111221111111000
Q ss_pred hh-hhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHh
Q 014204 185 MK-HMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 258 (429)
Q Consensus 185 LR-~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l 258 (429)
+. .+..++....++... =.-..|-||.++-..-|-.+-| ...||-+..|. .++||+..|++.....|
T Consensus 115 l~~~i~L~~la~~~~~~e----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 115 LGIEPNLDDIALMVEGTE----YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp CSSCCCHHHHHHHSTTEE----ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHhhCcCcE----ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 00 011111111111111 1124688988766666788888 57888888887 78899999998876555
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=44.36 E-value=1.3e+02 Score=27.11 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=79.4
Q ss_pred cceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhcccccc-ccCCCcchhhhHH--
Q 014204 107 SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTH-INFPLSTYEKELE-- 183 (429)
Q Consensus 107 S~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~-~NFp~~~yenEIe-- 183 (429)
.+|.||..+-..-+-.+-||. .||-+--| ..++|+|..|.++.+..+....-. ..|+.-.-.+...
T Consensus 41 ~~fpgli~Rl~~P~~t~lIF~----------SGKiv~TG-akS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~ 109 (182)
T 1ais_A 41 EEFPGIICHLDDPKVALLIFS----------SGKLVVTG-AKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSG 109 (182)
T ss_dssp TTCSSEEEECSSSCCEEEECT----------TSEEEEEE-ESSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEE
T ss_pred CccccEEEEcCCCcEEEEEeC----------CCeEEEec-CCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEE
Confidence 358899888877788888865 67766555 478889999988877666432111 1122100011000
Q ss_pred Hhh-hhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHhh
Q 014204 184 EMK-HMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFR 259 (429)
Q Consensus 184 eLR-~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l~ 259 (429)
.+. .+..++....++... =.-..|-|+.++-..-|=.+-| ...||-+..|. .++||+..|.+.....|.
T Consensus 110 ~l~~~i~L~~la~~~~~~~----YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L~ 179 (182)
T 1ais_A 110 DIGREFNLDVVALTLPNCE----YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLRELD 179 (182)
T ss_dssp ECSSCCCHHHHHHHSTTEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHT
T ss_pred EcCCccCHHHHHhhCCCCE----ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 000 011111111111111 1224688988765666778888 57888888886 788999999988766653
No 10
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=44.26 E-value=29 Score=32.62 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=30.0
Q ss_pred eceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 014204 110 RGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKY 164 (429)
Q Consensus 110 rGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~ 164 (429)
.||++++. |+|.... +.+||++.+|. |..||-.+...+...+
T Consensus 14 ~~v~~~~~-g~~~~r~----------~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNN-GYYCYRD----------PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETT-TEEEEEC----------TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCC-CeEEEEe----------ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36776664 8998765 45788899996 8888877766655444
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=40.22 E-value=32 Score=32.34 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=30.3
Q ss_pred ccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHh
Q 014204 212 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 258 (429)
Q Consensus 212 rGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l 258 (429)
.||++ ++.|.|+.+. ..+||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~-~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYI-RNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEE-ETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cccee-cCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 46764 5678999887 46788999996 8888877666554444
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=38.66 E-value=1.3e+02 Score=27.45 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=80.4
Q ss_pred ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhcccccc-ccCCCcchhhhHHH--
Q 014204 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTH-INFPLSTYEKELEE-- 184 (429)
Q Consensus 108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~-~NFp~~~yenEIee-- 184 (429)
+|-||..|-..-+-.+-||. .||-+--|.. ++|+|..|.++.+..+....-. ..|+.-.-.+....
T Consensus 46 ~fpgli~Rl~~Pk~t~lIF~----------SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~ 114 (198)
T 1mp9_A 46 QFPGLIFRLESPKITSLIFK----------SGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASAN 114 (198)
T ss_dssp TCSSEEEEETTTTEEEEECT----------TSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEE
T ss_pred cccceEEEcCCCceEEEEeC----------CCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEee
Confidence 58899888877888899966 7888887764 5678888888877666431111 11221000111000
Q ss_pred hh-hhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHhh
Q 014204 185 MK-HMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFR 259 (429)
Q Consensus 185 LR-~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l~ 259 (429)
|. .+..++....++... =.-..|-|+.++-..-|=.+-| ...||-+..|. .++|++..|.+.....|.
T Consensus 115 l~~~i~L~~la~~~~~~~----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 115 LHVIVNLDKAAFLLENNM----YEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp CSSEECHHHHHHHSSSEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHhhcCCcE----ECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 00 011111111111111 1224688988766666788888 57888888886 788999999998776664
No 13
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=26.26 E-value=70 Score=25.38 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=25.3
Q ss_pred eEEeeeccccCCceeecCCCC--cHHHHHHHHHHHHHHh
Q 014204 222 RWQARIGRVAGNKDLYLGTFS--TQEEAAEAYDIAAIKF 258 (429)
Q Consensus 222 kW~A~Ir~~~~~k~i~LGtF~--t~EeAArAYD~Aa~~l 258 (429)
.|+-+.+...+.+++.||.|+ |.+||....+.+...+
T Consensus 37 ~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 37 HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 488877532334578999997 5778877777666554
No 14
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=22.91 E-value=2.4e+02 Score=25.40 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=74.5
Q ss_pred ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCcchhhhHH--Hh
Q 014204 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELE--EM 185 (429)
Q Consensus 108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~~yenEIe--eL 185 (429)
+|.||..|-..-|-.+-|+. .||-+--|. .++|+|.+|.++.+..+..-.-...|+.-.-.+.+. +|
T Consensus 38 ~fpgli~R~~~Pk~~~lIF~----------SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl 106 (180)
T 1ytb_A 38 RFAAVIMRIREPKTTALIFA----------SGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDV 106 (180)
T ss_dssp TCSSEEEEETTTTEEEEECT----------TSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEEC
T ss_pred ccCCEEEEeCCCcEEEEEEC----------CCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEC
Confidence 58899988877888899966 788777675 567788888888766653321111121000000000 00
Q ss_pred h-hhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHh
Q 014204 186 K-HMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 258 (429)
Q Consensus 186 R-~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l 258 (429)
. .+..+......... ..=.-..|-|+.++-..-|=...| ...||-+..|. .++||+..|++.-.-.|
T Consensus 107 ~~~I~Le~la~~~~~~---~~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~L 174 (180)
T 1ytb_A 107 KFPIRLEGLAFSHGTF---SSYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPVL 174 (180)
T ss_dssp SSCBCHHHHHHHTTTT---EECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHhcccc---eEECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 0 01111111111110 001124678888654444555666 56788777776 78889999998755433
Done!