BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014205
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV2|M Chain M, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|N Chain N, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|O Chain O, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|P Chain P, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|Q Chain Q, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|R Chain R, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|S Chain S, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|T Chain T, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|U Chain U, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|V Chain V, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|W Chain W, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|X Chain X, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis
Length = 181
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 336 NGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFF 387
N F +RM + + E +PDT KRIK + + GIL KVSGF
Sbjct: 61 NAFDFRRMETDKKGENAPDT-KRIKETLEKFSLENMRYVGILKSGQKVSGFI 111
>pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From
Haemophilus Influenzae
Length = 344
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 277 SAENRELMGKSSGAYWTALAPNVEDYSGSVARMIAAG--SGQLIKGILWCGD-VTVDGLK 333
+A+ LM +SGA TAL P+ Y S+ +M+ + L +G + D VT+
Sbjct: 8 TAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESA 67
Query: 334 WGNGF 338
WG F
Sbjct: 68 WGRNF 72
>pdb|2TPL|A Chain A, Tyrosine Phenol-lyase From Citrobacter Intermedius Complex
With 3-(4'- Hydroxyphenyl)propionic Acid,
Pyridoxal-5'-phosphate And Cs+ Ion
pdb|2TPL|B Chain B, Tyrosine Phenol-lyase From Citrobacter Intermedius Complex
With 3-(4'- Hydroxyphenyl)propionic Acid,
Pyridoxal-5'-phosphate And Cs+ Ion
Length = 456
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
>pdb|1TPL|A Chain A, The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
pdb|1TPL|B Chain B, The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
Length = 456
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
>pdb|2YHK|A Chain A, D214a Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii
pdb|2YHK|B Chain B, D214a Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii
Length = 456
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 192 EPAVKLDDSHYFFTLRVPE--NGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE-- 247
+P + + YF T R + NG++ D V E + GL IA KG LK+L K+++
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDID-LKKLQKLIDEK 170
Query: 248 -----TYSCFSV 254
Y C +V
Sbjct: 171 GAENIAYICLAV 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,954,388
Number of Sequences: 62578
Number of extensions: 465445
Number of successful extensions: 1102
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 14
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)