BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014205
(429 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7V9J7|MNMG_PROMA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=mnmG PE=3 SV=1
Length = 667
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 43/203 (21%)
Query: 195 VKLDDSHYFFTLRV---------PENGSLETDQVHHEVLNYG-----LTIATKGQKHLLK 240
KL S FTL + P G Q+ HEV G L +T QK +L
Sbjct: 30 AKLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDALGGVIGRLADSTALQKRILN 89
Query: 241 ------------ELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSS 288
+ DK YS +Q ++ N + ++ E+KS+ NR+ + + S
Sbjct: 90 ASRGPAVWALRAQTDK--RQYSIEMLQMLQETPNLSLREAMVTDLEIKSSPNRKKIKEQS 147
Query: 289 GAYWTALAPNVEDYSGSV--ARMIAAGSGQLIKGILWCGDVTVDGLKWGN---------- 336
++ Y GS+ A+ + +G +KG +W G+ ++D + G
Sbjct: 148 EEKTIGQVQGIKTYFGSIYLAKAVILTTGTFLKGKIWIGNQSMDAGRAGEQAATGLTEAL 207
Query: 337 ---GFLRKRMGSGSQSEISPDTI 356
GF R+ +G+ + TI
Sbjct: 208 QKLGFETSRLKTGTPPRVDRRTI 230
>sp|C4LL70|RPOC_CORK4 DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rpoC
PE=3 SV=1
Length = 1332
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 185 QWPLAKDEPAVKLDDSHYFFTLRV-PENGSLETDQVHHEVLN--YGLTIATK--GQKHLL 239
Q P+A E +KL+D F+TL + P+NG D+V +E L+ GL + + G +H L
Sbjct: 1052 QAPIASTEGTIKLEDDGNFYTLTITPDNGE---DEVVYEKLSKRQGLAVTQEPGGFEHQL 1108
Query: 240 KELDKVL 246
+ D V+
Sbjct: 1109 RTGDHVV 1115
>sp|P23613|HYALP_CAVPO Hyaluronidase PH-20 OS=Cavia porcellus GN=SPAM1 PE=1 SV=1
Length = 529
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 82 EVDLSNPEAASASTAASSSPSSL--YPSVDMKD---MAENLFPEDDAVSHITANAPPSEH 136
+D+ N + + TA + ++ +PS+D D + ++ D++S IT++APPS H
Sbjct: 446 RLDVHNVRSVNVCTANNICIDAVLNFPSLDDDDEPPITDDTSQNQDSISDITSSAPPSSH 505
Query: 137 VLVK 140
+L K
Sbjct: 506 ILPK 509
>sp|Q58221|Y811_METJA Uncharacterized protein MJ0811 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0811 PE=4 SV=1
Length = 439
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 23/215 (10%)
Query: 198 DDSHY-FFTLRVPENGSLETD-QVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQ 255
+D+ Y FF V N +E +++ +L + + LL ELD+V
Sbjct: 44 EDTFYAFFKYVVEFNEYVEEKFKINKAILEGAIKNIEYEKSKLLTELDEV---------- 93
Query: 256 KVKNMGNWEMVAKEMSPEELKSAE-NRELMGKSSGAYWTALAPNVEDYSGSVARMIAAGS 314
N G ++ E E LK A+ N+EL +S L +++ + + + IA
Sbjct: 94 ---NAGTATIMFCEKFFENLKLAKLNKELKKFASEGKGEGLEDKLKEIAKNTMKDIAEEV 150
Query: 315 GQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVAT 374
++I+G + +G G K++ S D I + K+++++ K K+
Sbjct: 151 SEVIQGFNAVEN-------FGKGEGDKKLLSPEDRIKLADKILQNKKIREIVKKLGKLRL 203
Query: 375 GILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIV 409
++ ++G I ++K+G+ LLP EIV
Sbjct: 204 LAINEYKSKIKHYSGEIYSTKIGRDLKHLLPKEIV 238
>sp|Q8YM40|Y5100_NOSS1 UPF0192 protein all5100 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=all5100 PE=3 SV=1
Length = 1906
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 155 VELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDS--HYFFTLRVPENG 212
++LAS + ++ + +G N F ++ + PL K+EP K D S ++ + LR +N
Sbjct: 184 LDLASVQEHLQLIPEGKNEGLRFQVTLNKEEKPLDKEEPLKKFDPSARNWIYNLRPQKN- 242
Query: 213 SLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMG 261
L+T + V + G+ A G +E L TYS + QK+ G
Sbjct: 243 -LKTATRYRLVFSPGIRPAY-GNLVTDREFVSKLSTYSPLAFQKINFYG 289
>sp|Q9M9W9|P2C34_ARATH Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana
GN=At3g05640 PE=2 SV=1
Length = 358
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 252 FSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGA 290
FS++K KN+ + + AKE + E + A+ +EL+ +SSG
Sbjct: 15 FSIKKAKNINSSKSYAKEATDEMAREAKKKELILRSSGC 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,403,970
Number of Sequences: 539616
Number of extensions: 6367933
Number of successful extensions: 20458
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 20365
Number of HSP's gapped (non-prelim): 107
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)