Query 014205
Match_columns 429
No_of_seqs 95 out of 104
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1slq_A VP4; beta sandwich, gre 32.5 44 0.0015 32.4 4.6 92 153-255 81-182 (278)
2 2crf_A RAN binding protein 3; 31.1 2.7E+02 0.0091 24.4 9.2 105 132-249 23-136 (150)
3 2b4h_A Outer capsid protein VP 27.7 49 0.0017 31.7 4.0 92 153-255 103-204 (254)
4 2x5h_A ORF 131; viral protein; 19.2 50 0.0017 27.5 1.9 24 227-253 65-88 (97)
5 3v62_C ATP-dependent DNA helic 15.6 60 0.0021 25.8 1.5 49 319-368 12-60 (69)
6 1o1x_A Ribose-5-phosphate isom 14.6 68 0.0023 28.9 1.8 27 298-326 53-79 (155)
7 3he8_A Ribose-5-phosphate isom 14.3 71 0.0024 28.5 1.9 27 298-326 41-67 (149)
8 2vvr_A Ribose-5-phosphate isom 14.0 72 0.0025 28.4 1.8 27 298-326 42-68 (149)
9 2hiy_A Hypothetical protein; C 13.8 1.8E+02 0.006 26.2 4.4 32 227-258 47-79 (183)
10 3or1_C Sulfite reductase GAMA; 13.7 86 0.0029 26.4 2.1 24 285-312 12-35 (105)
No 1
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=32.52 E-value=44 Score=32.37 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=59.4
Q ss_pred ccccccccceEEEEEecCCcceEEEEEecCccc--------cccCCCCCeeeccCeeeEEeccCCCCCCCCcccccCcee
Q 014205 153 QSVELASGELYIVSLSQGDNVVAVFARVGDEIQ--------WPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVL 224 (429)
Q Consensus 153 ~Sv~la~G~LsIVrl~q~~~~~Avf~rVgD~~q--------WPL~kD~PVvKld~~hY~Fsl~~p~~~~~~~~~~~~~~L 224 (429)
.+.-.-|.+|.|-|+.--+...-+++--+||=| -.|..+---+.|..|+|-|.+|+-+-+ .-..+...|
T Consensus 81 ynggsLpTdf~i~r~evikens~vYiDYwDDSqaFrNMVYVRsl~A~ln~v~c~gg~y~f~lPvG~~p---~m~gg~v~l 157 (278)
T 1slq_A 81 FNGGSLPTDFVISRYEVIKENSYVYVDYWDDSQAFRNMVYVRSLAANLNSVICTGGDYSFALPVGQWP---VMTGGAVSL 157 (278)
T ss_dssp EECCSSTTSCEEEEEEEECTTCEEEEEEEESSTTTTTCCCEEEEEEEECEEEEECCEEECCCSSSCCC---EEECCEEEE
T ss_pred ccCCCCCCCcccceEEEEecccEEEEEeccchHhhhheeEEeeehhhcCcEEEcCccEEEEeecCCCc---cccCceEEE
Confidence 344566788888877665555566776666543 356667777889999999999875422 111234568
Q ss_pred eE-EEEEecCcchHHHHHHHHHHhhcC-ceeee
Q 014205 225 NY-GLTIATKGQKHLLKELDKVLETYS-CFSVQ 255 (429)
Q Consensus 225 sY-GVtfsse~~e~~l~~LD~lL~q~S-~Fsvq 255 (429)
+| ||||+- +|-++.+-+| .|+..
T Consensus 158 ~~~gvtLSt--------QfTD~vslNSlRFrF~ 182 (278)
T 1slq_A 158 HSAGVTLST--------QFTDFVSLNSLRFRFR 182 (278)
T ss_dssp EEEEEEEEE--------EEESSBEEEEEEEEEE
T ss_pred EEcceEEEe--------eeeeeEeeeeeEEEEE
Confidence 88 999985 2555555555 44443
No 2
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=31.06 E-value=2.7e+02 Score=24.35 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=56.7
Q ss_pred CCCcceEEEecCeEEEEecCC--ccccccccceEEEEEecC--CcceE-EEEEecCc----cccccCCCCCeeeccCeee
Q 014205 132 PPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQG--DNVVA-VFARVGDE----IQWPLAKDEPAVKLDDSHY 202 (429)
Q Consensus 132 ~~~ee~Ll~IPGaqlhLVd~~--~Sv~la~G~LsIVrl~q~--~~~~A-vf~rVgD~----~qWPL~kD~PVvKld~~hY 202 (429)
+-.|++|+.+. |.||..|.+ +=.+..-|+|+|.+-... ++.-+ ++.|--.. +--+|.++.+.-+.+....
T Consensus 23 EE~E~~l~~~r-aKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~ 101 (150)
T 2crf_A 23 EEAESNVLQMQ-CKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSI 101 (150)
T ss_dssp CCCCEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEE
T ss_pred CcCeEEEEEEE-eEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceeecCCCCEE
Confidence 34588888887 889888764 677899999999987632 22211 23332100 1112223323323344455
Q ss_pred EEeccCCCCCCCCcccccCceeeEEEEEecCcchHHHHHHHHHHhhc
Q 014205 203 FFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETY 249 (429)
Q Consensus 203 ~Fsl~~p~~~~~~~~~~~~~~LsYGVtfsse~~e~~l~~LD~lL~q~ 249 (429)
.|+-.-+.+ +.+-.|.|-|..+..+ ++|..+.++.
T Consensus 102 ~~~~~d~~d---------~~~~~~lirfk~~e~a---~lf~~~~e~i 136 (150)
T 2crf_A 102 HITAMDTED---------QGVKVFLISASSKDTG---QLYAALHHRI 136 (150)
T ss_dssp EEEEEBSSS---------CCEEEEEEECCHHHHH---HHHHHHHHHH
T ss_pred EEEeecCCC---------CceEEEEEEECCHHHH---HHHHHHHHHH
Confidence 665422211 1345788888764333 5555555543
No 3
>2b4h_A Outer capsid protein VP4; beta sandwich, greek KEY, membrane penetration protein, non- virus, spike protein, rearrangement, viral protein; 1.60A {Rhesus rotavirus} PDB: 2b4i_A
Probab=27.67 E-value=49 Score=31.72 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=59.8
Q ss_pred ccccccccceEEEEEecCCcceEEEEEecCccc--------cccCCCCCeeeccCeeeEEeccCCCCCCCCcccccCcee
Q 014205 153 QSVELASGELYIVSLSQGDNVVAVFARVGDEIQ--------WPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVL 224 (429)
Q Consensus 153 ~Sv~la~G~LsIVrl~q~~~~~Avf~rVgD~~q--------WPL~kD~PVvKld~~hY~Fsl~~p~~~~~~~~~~~~~~L 224 (429)
...-.-|.+|.|-|+.--+...-+++--.||=| -.|..|---+.|..|.|-|.+|+-+-+ .-..+...|
T Consensus 103 ynggsLpTdf~isr~evikensyvYiDYwDDSqaFrNMVYVRsL~A~ln~v~c~gg~y~f~lPvG~~p---~m~gg~v~l 179 (254)
T 2b4h_A 103 FNGGSLPTDFVISRYEVIKENSYVYVDYWDDSQAFRNMVYVRSLAANLNSVICTGGDYSFALPVGQWP---VMTGGAVSL 179 (254)
T ss_dssp EECCSSTTSCEEEEEEEECTTCEEEEEEEECCHHHHTCCSEEEEEEEECCEEEECCCEECCCSSSCCC---EEEECEEEE
T ss_pred ccCCCCCCCcccceEEEEecccEEEEEeccchHhhhceeEEeeehhhcCcEEEcCccEEEEeecCCCc---cccCceEEE
Confidence 344566788888877665555566776666543 457777777889999999999875422 111234568
Q ss_pred eE-EEEEecCcchHHHHHHHHHHhhcC-ceeee
Q 014205 225 NY-GLTIATKGQKHLLKELDKVLETYS-CFSVQ 255 (429)
Q Consensus 225 sY-GVtfsse~~e~~l~~LD~lL~q~S-~Fsvq 255 (429)
+| ||||+- +|-++.+-+| .|+..
T Consensus 180 ~~~gvtLSt--------QfTD~vslNSlRFrFr 204 (254)
T 2b4h_A 180 HSAGVTLST--------QFTDFVSLNSLRFRFR 204 (254)
T ss_dssp EEEEEEEEE--------EECSSCEEEEEEEEEE
T ss_pred EEcceEEEe--------eeeeeEEeeeeEEEEE
Confidence 88 999975 2555555554 44443
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=19.25 E-value=50 Score=27.45 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEecCcchHHHHHHHHHHhhcCcee
Q 014205 227 GLTIATKGQKHLLKELDKVLETYSCFS 253 (429)
Q Consensus 227 GVtfsse~~e~~l~~LD~lL~q~S~Fs 253 (429)
||| ..++++|...-.||+.||+|-
T Consensus 65 GiT---a~DA~dL~lIa~FLeKYS~~L 88 (97)
T 2x5h_A 65 GIT---PQDAEDLKLIAEFLEKYSDFL 88 (97)
T ss_dssp EEC---GGGHHHHHHHHHHHHHTHHHH
T ss_pred CCC---cccHHHHHHHHHHHHHHHHHH
Confidence 887 346899999999999999875
No 5
>3v62_C ATP-dependent DNA helicase SRS2, proliferating cell nuclear antigen; ubiquitin-like protein PCNA; HET: MLY; 2.90A {Saccharomyces cerevisiae}
Probab=15.60 E-value=60 Score=25.76 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=10.2
Q ss_pred eeeeeeccceecccccchhhhhhccCCCCCCccCHHHHHHHHHHHHHhHH
Q 014205 319 KGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKM 368 (429)
Q Consensus 319 kGI~~cae~T~~~IqkG~e~lr~ri~p~ekseVSP~tlKrLkraKk~Tkm 368 (429)
+-|+..|-..+++++++...-++++..+.. .---..+-+|.||||-+++
T Consensus 12 RPIltnAK~LADA~rk~~~~~~~kvKke~~-~~q~DIfsqLsrAkKkak~ 60 (69)
T 3v62_C 12 RPIISNAKFLADAAMKKTQKFSKKVKNEPA-SSQMDIFSQLSRAKKKSKL 60 (69)
T ss_dssp --------------------------------CBCCHHHHHHHHHC----
T ss_pred cchhhhhHHHHHHHhccccccccccccCCC-cchhhHHHHHHHHHhccCC
Confidence 346666778888888888887776655333 1112478899999998775
No 6
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=14.57 E-value=68 Score=28.88 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=22.9
Q ss_pred CcCcchhHHHHHHHhcccceeeeeeeecc
Q 014205 298 NVEDYSGSVARMIAAGSGQLIKGILWCGD 326 (429)
Q Consensus 298 nVedYs~~vAk~IasGsg~likGI~~cae 326 (429)
.-|||..++|+++++|. .-+||+-|+=
T Consensus 53 dYpd~a~~va~~V~~g~--~d~GIliCGT 79 (155)
T 1o1x_A 53 DYPDYAKKVVQSILSNE--ADFGILLCGT 79 (155)
T ss_dssp CHHHHHHHHHHHHHTTS--CSEEEEEESS
T ss_pred ChHHHHHHHHHHHHcCC--CceEEEEcCC
Confidence 46889999999999875 4699999983
No 7
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=14.35 E-value=71 Score=28.48 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=22.7
Q ss_pred CcCcchhHHHHHHHhcccceeeeeeeecc
Q 014205 298 NVEDYSGSVARMIAAGSGQLIKGILWCGD 326 (429)
Q Consensus 298 nVedYs~~vAk~IasGsg~likGI~~cae 326 (429)
.-|||..++|+++++|. .-+||+-|+=
T Consensus 41 dYpd~a~~va~~V~~g~--~d~GIliCGT 67 (149)
T 3he8_A 41 DYPDFGLKVAEAVKSGE--CDRGIVICGT 67 (149)
T ss_dssp CHHHHHHHHHHHHHTTS--SSEEEEEESS
T ss_pred CHHHHHHHHHHHHHcCC--CCEEEEEcCC
Confidence 46889999999999865 5589999984
No 8
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=13.97 E-value=72 Score=28.41 Aligned_cols=27 Identities=37% Similarity=0.667 Sum_probs=22.9
Q ss_pred CcCcchhHHHHHHHhcccceeeeeeeecc
Q 014205 298 NVEDYSGSVARMIAAGSGQLIKGILWCGD 326 (429)
Q Consensus 298 nVedYs~~vAk~IasGsg~likGI~~cae 326 (429)
.-|||..++|+++++|. .-+||+-|+=
T Consensus 42 dYpd~a~~va~~V~~g~--~d~GIliCGT 68 (149)
T 2vvr_A 42 DYPHYASQVALAVAGGE--VDGGILICGT 68 (149)
T ss_dssp CHHHHHHHHHHHHHTTS--SSEEEEEESS
T ss_pred ChHHHHHHHHHHHHcCC--CceEEEEeCC
Confidence 46889999999999875 4699999983
No 9
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=13.80 E-value=1.8e+02 Score=26.22 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=25.3
Q ss_pred EEEEecCcc-hHHHHHHHHHHhhcCceeeeeee
Q 014205 227 GLTIATKGQ-KHLLKELDKVLETYSCFSVQKVK 258 (429)
Q Consensus 227 GVtfsse~~-e~~l~~LD~lL~q~S~Fsvq~~~ 258 (429)
-|+|.++.+ +++...+++.|++.=.|.+....
T Consensus 47 NvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~v 79 (183)
T 2hiy_A 47 NIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSL 79 (183)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEE
T ss_pred CEEEecCCCHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 688876545 67788999999999899888654
No 10
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=13.67 E-value=86 Score=26.41 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=19.2
Q ss_pred cccccccccccCCCcCcchhHHHHHHHh
Q 014205 285 GKSSGAYWTALAPNVEDYSGSVARMIAA 312 (429)
Q Consensus 285 e~~~~ayWt~~APnVedYs~~vAk~Ias 312 (429)
|....+|-. +.+|||+.+|+.||.
T Consensus 12 e~D~~GfL~----~~~dW~ee~A~~lA~ 35 (105)
T 3or1_C 12 EVDEDGFLN----AFDDWCPEWVKYAKG 35 (105)
T ss_dssp EBCTTSCBS----CGGGCCHHHHHHHGG
T ss_pred eeCCCCCcC----ChHhCCHHHHHHHHH
Confidence 334456766 789999999999998
Done!