Query 014205
Match_columns 429
No_of_seqs 95 out of 104
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014205.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014205hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crfa1 b.55.1.3 (A:8-144) Ran 62.8 27 0.002 27.9 10.0 100 134-246 18-126 (137)
2 d1v8ca2 d.129.5.1 (A:88-165) M 15.5 52 0.0038 24.3 3.0 31 135-168 27-57 (78)
3 d2v4jc1 d.203.1.1 (C:3-105) Ds 13.7 46 0.0033 26.0 2.4 25 285-313 10-34 (103)
4 d1ji8a_ d.203.1.1 (A:) DsrC, t 12.9 35 0.0025 27.1 1.5 23 286-312 18-40 (111)
5 d1rrpb_ b.55.1.3 (B:) Nuclear 12.3 2.9E+02 0.021 21.1 11.0 41 134-175 20-62 (134)
6 d1o1xa_ c.121.1.1 (A:) Putativ 8.4 67 0.0049 26.2 1.7 30 298-329 43-72 (145)
7 d1s29a_ a.4.5.46 (A:) Lupus La 7.0 72 0.0052 24.2 1.2 41 336-376 30-70 (92)
8 d1udxa1 b.117.1.1 (A:1-156) Ob 6.7 1.4E+02 0.0098 24.4 2.9 19 134-152 81-100 (156)
9 d1nn4a_ c.121.1.1 (A:) Alterna 6.6 89 0.0065 25.9 1.7 28 298-327 55-82 (159)
10 d1u69a_ d.32.1.7 (A:) Hypothet 6.6 3.3E+02 0.024 21.7 5.3 44 197-249 54-97 (156)
No 1
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.82 E-value=27 Score=27.90 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=60.2
Q ss_pred CcceEEEecCeEEEEecCC--ccccccccceEEEEEecCCcc--eE-EEEEecCc----cccccCCCCCeeeccCeeeEE
Q 014205 134 SEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQGDNV--VA-VFARVGDE----IQWPLAKDEPAVKLDDSHYFF 204 (429)
Q Consensus 134 ~ee~Ll~IPGaqlhLVd~~--~Sv~la~G~LsIVrl~q~~~~--~A-vf~rVgD~----~qWPL~kD~PVvKld~~hY~F 204 (429)
.|+.|++.. |.||..|++ +-.+...|.|+|.+....+.. .+ .+.|-..- +-=+|.++.+.-+.+.....|
T Consensus 18 ~E~~l~~~r-~KL~~fd~~~~~WkerG~G~lkl~~~k~~~~~t~k~RlvmR~~~~~kv~lN~~i~~~m~~~~~~~k~v~~ 96 (137)
T d2crfa1 18 AESNVLQMQ-CKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHI 96 (137)
T ss_dssp CCEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEE
T ss_pred CcEEEEEEE-EEEEEEeCCCCcCcccCEEEEEEEEEeccCCCCceEEEEEEECCCCeEEEeCEECCCCccccCCCCEEEE
Confidence 467899997 899988754 778999999999887765433 12 23332110 122445555555666667777
Q ss_pred eccCCCCCCCCcccccCceeeEEEEEecCcchHHHHHHHHHH
Q 014205 205 TLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVL 246 (429)
Q Consensus 205 sl~~p~~~~~~~~~~~~~~LsYGVtfsse~~e~~l~~LD~lL 246 (429)
+-..+.+ +.+-.|-+.|..+ +.-++|+.+-
T Consensus 97 ~~~d~~~---------~~~~~~li~~~~~---~~~~l~~~i~ 126 (137)
T d2crfa1 97 TAMDTED---------QGVKVFLISASSK---DTGQLYAALH 126 (137)
T ss_dssp EEEBSSS---------CCEEEEEEECCHH---HHHHHHHHHH
T ss_pred EeecCCC---------CceEEEEEEECCH---HHHHHHHHHH
Confidence 6543331 2356688888654 3334454443
No 2
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=15.49 E-value=52 Score=24.33 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=25.7
Q ss_pred cceEEEecCeEEEEecCCccccccccceEEEEEe
Q 014205 135 EHVLVKIPGAIVHLIEREQSVELASGELYIVSLS 168 (429)
Q Consensus 135 ee~Ll~IPGaqlhLVd~~~Sv~la~G~LsIVrl~ 168 (429)
.|-++++||+.|-|- +..+|.-|.|+|-|++
T Consensus 27 ~egv~rlpga~vrf~---e~~pl~vgsl~ip~lr 57 (78)
T d1v8ca2 27 GEGVYRLPGAVVRFR---EVEPLKVGSLSIPQLR 57 (78)
T ss_dssp ETTEEEETTEEEEEE---EEEEEEETTEEEEEEE
T ss_pred cceEEecCCeEEEec---ccCCceecceecceEE
Confidence 567899999999885 4568888999998875
No 3
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=13.65 E-value=46 Score=26.00 Aligned_cols=25 Identities=4% Similarity=0.179 Sum_probs=20.3
Q ss_pred cccccccccccCCCcCcchhHHHHHHHhc
Q 014205 285 GKSSGAYWTALAPNVEDYSGSVARMIAAG 313 (429)
Q Consensus 285 e~~~~ayWt~~APnVedYs~~vAk~IasG 313 (429)
|....+|-. +.+|||+.+|+.||.-
T Consensus 10 e~D~~GyL~----~~~dW~e~vA~~lA~~ 34 (103)
T d2v4jc1 10 EVDEDGFLL----RFDDWCPEWVEYVKES 34 (103)
T ss_dssp CBCTTSCBS----CGGGCCHHHHHHHGGG
T ss_pred eECCCcccC----CcccCCHHHHHHHHHH
Confidence 344566777 8999999999999884
No 4
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=12.93 E-value=35 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=18.7
Q ss_pred ccccccccccCCCcCcchhHHHHHHHh
Q 014205 286 KSSGAYWTALAPNVEDYSGSVARMIAA 312 (429)
Q Consensus 286 ~~~~ayWt~~APnVedYs~~vAk~Ias 312 (429)
....+|-. +.+|||+.+|+.||.
T Consensus 18 ~D~~GfL~----~~~dW~e~vA~~lA~ 40 (111)
T d1ji8a_ 18 LDEDCFMQ----NPEDWDEKVAEWLAR 40 (111)
T ss_dssp EEGGGEEC----CGGGCCHHHHHHHHH
T ss_pred ECCCCccC----ChhhcCHHHHHHHHH
Confidence 33456777 899999999999996
No 5
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.25 E-value=2.9e+02 Score=21.07 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=30.7
Q ss_pred CcceEEEecCeEEEEecCC--ccccccccceEEEEEecCCcceE
Q 014205 134 SEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQGDNVVA 175 (429)
Q Consensus 134 ~ee~Ll~IPGaqlhLVd~~--~Sv~la~G~LsIVrl~q~~~~~A 175 (429)
.|++++... |.||..+++ .=.+..-|.|.|.+=.+.+....
T Consensus 20 ~E~~if~~r-~KL~~~~~~~~~WkerGvG~lkil~~~~t~~~Rl 62 (134)
T d1rrpb_ 20 DEEEFFCNR-AKLFRFDVESKEWKERGIGNVKILRHKTSGKIRL 62 (134)
T ss_dssp SEEEEEEEE-EEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEE
T ss_pred CcEEEEEEe-eEEEEEcCCCCceeeeeEEEEEEEEcCCCCcEEE
Confidence 367888886 788877644 67788999999988877665443
No 6
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=8.36 E-value=67 Score=26.15 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=24.0
Q ss_pred CcCcchhHHHHHHHhcccceeeeeeeecccee
Q 014205 298 NVEDYSGSVARMIAAGSGQLIKGILWCGDVTV 329 (429)
Q Consensus 298 nVedYs~~vAk~IasGsg~likGI~~cae~T~ 329 (429)
..+||...+|+.|+.| ...+||+-|+-=.+
T Consensus 43 dYpd~a~~va~~v~~~--~~~~GIliCGtG~G 72 (145)
T d1o1xa_ 43 DYPDYAKKVVQSILSN--EADFGILLCGTGLG 72 (145)
T ss_dssp CHHHHHHHHHHHHHTT--SCSEEEEEESSSHH
T ss_pred CccHHHHHHHHHHhcC--cccEEEEecCCcHH
Confidence 4588999999999987 44689999985443
No 7
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Probab=7.05 E-value=72 Score=24.24 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=34.4
Q ss_pred hhhhhhccCCCCCCccCHHHHHHHHHHHHHhHHHHHHHHHH
Q 014205 336 NGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVATGI 376 (429)
Q Consensus 336 ~e~lr~ri~p~ekseVSP~tlKrLkraKk~TkmtekVSq~L 376 (429)
..+||++|...+..-|+=.++-+-+|.|++|.-.+.|.++|
T Consensus 30 D~fL~~~m~~~~~G~V~i~~i~~F~rmk~lt~d~~~i~~Al 70 (92)
T d1s29a_ 30 DIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAI 70 (92)
T ss_dssp CHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHhccCCCcEEhHHHhcCcCHHHhcCCHHHHHHHH
Confidence 45788999876667788899999999999998777777776
No 8
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.67 E-value=1.4e+02 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=15.7
Q ss_pred CcceEEEec-CeEEEEecCC
Q 014205 134 SEHVLVKIP-GAIVHLIERE 152 (429)
Q Consensus 134 ~ee~Ll~IP-GaqlhLVd~~ 152 (429)
-+++.|+|| |.+|+..+..
T Consensus 81 G~D~~I~VP~GT~V~~~~~~ 100 (156)
T d1udxa1 81 GEDLVIEVPRGTRVFDADTG 100 (156)
T ss_dssp CCCEEEEECSSEEEEETTTC
T ss_pred CCCEEEEecCCCEEEeCCCC
Confidence 389999999 9999976643
No 9
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=89 Score=25.90 Aligned_cols=28 Identities=36% Similarity=0.622 Sum_probs=22.7
Q ss_pred CcCcchhHHHHHHHhcccceeeeeeeeccc
Q 014205 298 NVEDYSGSVARMIAAGSGQLIKGILWCGDV 327 (429)
Q Consensus 298 nVedYs~~vAk~IasGsg~likGI~~cae~ 327 (429)
..|||...+|+.|+.| ..-+||+-|+-=
T Consensus 55 DYpd~a~~va~~v~~~--~~~~GIliCGtG 82 (159)
T d1nn4a_ 55 DYPHYASQVALAVAGG--EVDGGILICGTG 82 (159)
T ss_dssp CHHHHHHHHHHHHHTT--SSSEEEEEESSS
T ss_pred CccHHHHHHHHHHHhc--cceeEEEecCCc
Confidence 4678999999999875 566899999743
No 10
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.55 E-value=3.3e+02 Score=21.67 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=28.0
Q ss_pred ccCeeeEEeccCCCCCCCCcccccCceeeEEEEEecCcchHHHHHHHHHHhhc
Q 014205 197 LDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETY 249 (429)
Q Consensus 197 ld~~hY~Fsl~~p~~~~~~~~~~~~~~LsYGVtfsse~~e~~l~~LD~lL~q~ 249 (429)
++..++|+++..|.-+ -.-++.|.+.-++.++.-+.|+.|.+..
T Consensus 54 i~g~~lm~sD~~~~~~---------~~~~~sl~l~~d~~eE~d~~f~~LsegG 97 (156)
T d1u69a_ 54 VMGIPCLGLNGGPAFR---------HSEAFSFQVATDDQAETDRLWNAIVDNG 97 (156)
T ss_dssp ETTEEEEEEECCTTCC---------CCTTEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ECCeEEEeecCCCCCC---------CCCCeEEEEecCCHHHHHHHHHHHhccC
Confidence 3457888888655421 1134456666677888888888876543
Done!