BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014206
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 268/428 (62%), Gaps = 14/428 (3%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
D+ G F L +D K I + I EA F +HL+E ++
Sbjct: 135 DQNGNFLENLKEDTKAILSLYEASFLALEGEN-ILDEARVFAISHLKELSEEK------I 187
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDE 121
G + V HALELPLH R RLEA W I+ Y + D N VL+ELA LD+N +Q+ +Q +
Sbjct: 188 GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRD 247
Query: 122 LKYVSWWWRKTGLG-ELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDV 180
L+ S WWR+ GL +LHFARDR++E+F+WA+G +EPQ+ CR K+ + +T +DD+
Sbjct: 248 LRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDI 307
Query: 181 YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVP 240
YDVYGTLDELE FT+AVERWDVNA++ LP YMK+CF L+++ NE+A+D LKD+G +++P
Sbjct: 308 YDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILP 367
Query: 241 YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEA 300
YL KAWAD+C +FL EAKW + PT D+Y NAW S SGP+ L+ AY + K+E
Sbjct: 368 YLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEE 427
Query: 301 LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 360
++ LQ+Y II PS IFRL NDLA++S E+ RG+ ++ CYM G SE A + +
Sbjct: 428 IENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMN 487
Query: 361 LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDN-SKNRV 419
LI W KMN ++ G L FV+ A+NLAR + CTY NGD HT D ++ RV
Sbjct: 488 LIDETWKKMNKEKLGGS-----LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRV 542
Query: 420 LPLLIHPI 427
L ++ PI
Sbjct: 543 LSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/412 (43%), Positives = 265/412 (64%), Gaps = 11/412 (2%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
+E+G+FK L DD +G+ +T+ A F T LEE V +
Sbjct: 125 NEEGEFKESLSDDTRGLLQLYEASFLLTEGETTL-ESAREFATKFLEEKVNEGGV----- 178
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDE 121
G + ++L++PLHWR+ R A +I+ Y + DMNPV++ELA LD N VQA Q+E
Sbjct: 179 DGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEE 238
Query: 122 LKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDV 180
LK WWR TG E L FARDR+VE +FW G I Q R M KVNALIT +DD+
Sbjct: 239 LKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDI 298
Query: 181 YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVP 240
YDVYGTL+ELEQFT+ + RWD+N++DQLP YM++CF L++ ++ ++D +K++GV+V+P
Sbjct: 299 YDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIP 358
Query: 241 YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEA 300
YL+++W D+ +++EA+W+ G+ P+L+EY+EN+W S+SGP +L H + + + +E
Sbjct: 359 YLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKET 418
Query: 301 LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 360
+ L +Y ++RW S + RLA+DL TS +EV RGDVPK++QCYM + ASE++AR H++
Sbjct: 419 VDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKW 478
Query: 361 LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQ 412
LI W KMN +R ++P +F+ A++L RMAQ Y NGDGH Q
Sbjct: 479 LIAEVWKKMNAERVSKDSP----FGKDFIGCAVDLGRMAQLMYHNGDGHGTQ 526
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 259/422 (61%), Gaps = 16/422 (3%)
Query: 7 FKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXXGGYFS 66
FK L DD +G+ T+ A +F T L++ V
Sbjct: 158 FKPSLVDDTRGLLQLYEASFLSAQGEETL-RLARDFATKFLQKRVLVDKDINLLSS---- 212
Query: 67 ALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVS 126
++ ALELP HWR+ AR FID Y+R DMNP ++ELAKLDFN VQA Q ELK S
Sbjct: 213 --IERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEAS 270
Query: 127 WWWRKTGL-GELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYG 185
WW TGL EL F RDRIVE ++W G + Q GY R M TK+NAL+TT+DDV+D+YG
Sbjct: 271 RWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYG 330
Query: 186 TLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKA 245
TL+EL+ FT A++RWD+ +M QLP YM++C+ L + NEMA+D L+D+G PYL+K
Sbjct: 331 TLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKV 390
Query: 246 WADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQ 305
W + +S+L+EAKWY G+ P+L+EY++N+W+S+ G IL H + + + +EEA + +
Sbjct: 391 WVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMH 450
Query: 306 EYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAA 365
+Y I+R I RLA+D+ TS DEV+RGDVPK++QCYM+E ASE +AR H+R LI
Sbjct: 451 KYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQT 510
Query: 366 WMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQN-GDGHTVQDNSKNRVL-PLL 423
W MN + FV+ + NLARMAQ YQ+ DG +Q + N++L LL
Sbjct: 511 WKMMNKEMMTSS------FSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLL 564
Query: 424 IH 425
H
Sbjct: 565 FH 566
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/430 (42%), Positives = 254/430 (59%), Gaps = 15/430 (3%)
Query: 2 DEKG-KFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXX 60
+EKG FK+ L D KG+ T+ A F T L+ KK +
Sbjct: 128 NEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFATKCLQ---KKLDEGGNE 183
Query: 61 XGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQD 120
++H+L+LPLHWR+ +EARWFID Y R DMNP++ ELAKL+FN +QA HQ
Sbjct: 184 IDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQ 243
Query: 121 ELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEP-QFGYCRRMSTKVNALITTVD 178
ELK +S WW + E L F RDR+VE+FFWA+G ++EP Q GY R+M+ + L T +D
Sbjct: 244 ELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG-MFEPHQHGYQRKMAATIIVLATVID 302
Query: 179 DVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHV 238
D+YDVYGTLDELE FT+ +RWD ++ +LPYYM++C+ +H+ ++ A+D LK+ G
Sbjct: 303 DIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFC 362
Query: 239 VPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKE 298
+ YL+K+ D+ +++ EAKWY SGY P+LDEY+ A +SV+ P I+ Y AN + +
Sbjct: 363 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHD 422
Query: 299 EA-LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLH 357
A + L +Y I+ +I RL +DL TS E+ RGDVPK IQCYM ET ASE +A H
Sbjct: 423 TAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEH 482
Query: 358 IRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQ-DNSK 416
++ LI AW MN P+ V A N+ R+AQ Y +GDG VQ +
Sbjct: 483 VKFLIREAWKDMNTAIAAGYP-----FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTY 537
Query: 417 NRVLPLLIHP 426
+ LL P
Sbjct: 538 EHIAGLLFEP 547
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 218/428 (50%), Gaps = 15/428 (3%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE+G FKS + D++G+ I EAI+FTT HL V +
Sbjct: 138 DEQGNFKSSVTSDVRGLLELYQASYLRVHGED-ILDEAISFTTHHLSLAVASLDHP---- 192
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDE 121
S V HAL+ + + R+EAR ++ VY+ N L+E AK+DFN +Q H+ E
Sbjct: 193 ---LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKE 249
Query: 122 LKYVSWWWRKTGLG-ELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDV 180
L + WW+ +L +ARDR+VE +FW G +EPQ+ R+M TKV A+ + VDD
Sbjct: 250 LSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDT 309
Query: 181 YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVP 240
YD Y T +EL +TNA+ERWD+ +D++P YMK + L EM + + V
Sbjct: 310 YDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVE 369
Query: 241 YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEA 300
Y K A + +S+L+EAKW Y P+ +E+ NA + ++ + ++ + + E
Sbjct: 370 YAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPET 429
Query: 301 LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 360
++ P II+ ++I R +D+A + +R D AI+CYM E G + +A
Sbjct: 430 FKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNK 489
Query: 361 LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHT-VQDNSKNRV 419
+ +AW +N E +P + ++NLAR+ Y+ GDG+T V +K +
Sbjct: 490 HVESAWKDLNQ-----EFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGI 544
Query: 420 LPLLIHPI 427
LLI PI
Sbjct: 545 TSLLIEPI 552
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 224/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 182
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FWALG +EPQ+ R M K ++I+ VDD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 421
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I+R+ +D AT E RG + I+C M + G S +A +
Sbjct: 422 DFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHT-VQDNSKN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T ++ K
Sbjct: 482 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKP 536
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 537 HIINLLVDSIK 547
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 223/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLE-------SAAPHL 182
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FWALG +EPQ+ R M K ++I+ VDD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 421
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHT-VQDNSKN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T ++ K
Sbjct: 482 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKP 536
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 537 HIINLLVDSIK 547
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 182
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FWALG +EPQ+ R M K ++I+ VDD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 421
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHTVQDNS-KN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T + K
Sbjct: 482 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKP 536
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 537 HIINLLVDSIK 547
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 118 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 169
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 170 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 229
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FWALG +EPQ+ R M K ++I+ VDD
Sbjct: 230 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 289
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 290 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 349
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 350 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 408
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 409 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 468
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHTVQDNS-KN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T + K
Sbjct: 469 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKP 523
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 524 HIINLLVDSIK 534
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 184
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 185 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 244
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FWALG +EPQ+ R M K ++I+ VDD
Sbjct: 245 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 304
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 305 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 364
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 365 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 423
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 424 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 483
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHTVQDNS-KN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T + K
Sbjct: 484 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKP 538
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 539 HIINLLVDSIK 549
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 182
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FWALG +EPQ+ R M K ++I+ VDD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 421
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHTVQDNS-KN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T + K
Sbjct: 482 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKP 536
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 537 HIINLLVDSIK 547
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 219/412 (53%), Gaps = 25/412 (6%)
Query: 35 IFHEAINFTTTHLEEYVKKHNXXXX-XXGGYFSALVKHALELPLHWRMVRLEARWFIDVY 93
I EA +F T +L E ++K S +K+AL+ H + R+EA+ + VY
Sbjct: 410 ILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY 469
Query: 94 ERGTDM------------NPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFAR 141
N +EL KLDFN +Q+ HQ+E+K V+ W+R +GL FAR
Sbjct: 470 RPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFAR 529
Query: 142 DRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWD 201
+R +E +F +EPQ+ CR + TKV L T +DD+YD YGTLDEL+ FT AV RWD
Sbjct: 530 ERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWD 589
Query: 202 VNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYS 261
++ + LP YMK+C+ + + +E+A++A K+QG +V + +K W D + EA+W +
Sbjct: 590 LSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLA 649
Query: 262 SGYIPTLDEYIENAWVSVSGPVILLHAYSLI-ANPAKEEALQFLQEYPH---IIRWPSMI 317
+ Y+PTLDEYI+N S+ ++LL ++ +EAL+ + +YP + S+I
Sbjct: 650 AEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKV-DYPGRRVLTELNSLI 708
Query: 318 FRLANDLATSSDEVKRGDVPKAIQCYMHE-TGASESDARLHIRDLITAAWMKMNNKREGD 376
RLA+D T E RG++ +I+CYM + +E +A HI ++ A ++ +
Sbjct: 709 SRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREF--- 765
Query: 377 ENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQD-NSKNRVLPLLIHPI 427
PD +P + R+ +++GDG V K+ + LI P+
Sbjct: 766 LKPDD--VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPL 815
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 222/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 184
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 185 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 244
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +FW LG +EPQ+ R M K ++I+ VDD
Sbjct: 245 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDD 304
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 305 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 364
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + ++ +Y L A E+
Sbjct: 365 CHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSY-LGMKSATEQ 423
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 424 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 483
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHTVQDNS-KN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T + K
Sbjct: 484 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKP 538
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 539 HIINLLVDSIK 549
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 209/377 (55%), Gaps = 27/377 (7%)
Query: 69 VKHALELPLHWRMVRLEARWFIDVYERGTD---------MNPVL-----VELAKLDFNSV 114
V++AL+ P H M RLEAR +I+ Y G D M P + +ELAKLDFN V
Sbjct: 417 VEYALKYPWHKSMPRLEARSYIENY--GPDDVWLGKTVYMMPYISNEKYLELAKLDFNKV 474
Query: 115 QAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALI 174
Q+ HQ EL+ + WW+ +G +L+F R+R+ E +F I+EP+F CR + TK +
Sbjct: 475 QSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFT 534
Query: 175 TTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQ 234
+DD+YD +G+LD+L+ FT +V+RWD++ +DQ+P MK+CF +++ N++A + + Q
Sbjct: 535 VILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQ 594
Query: 235 GVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVS-GPVILLHAYSLIA 293
G V+ Y++ W +++ EA+W + Y+P+ +EYIENA VS++ G V+L+ A
Sbjct: 595 GRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISAL-FTG 653
Query: 294 NPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE-TGASES 352
+E L + ++ + RL ND T E +G+V AIQCYM + SE
Sbjct: 654 EVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEE 713
Query: 353 DARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQ 412
+A H+ ++ A ++N RE N +P+ + + AR+ Q Y GDG T+
Sbjct: 714 EALQHVYSVMENALEELN--REFVNNK----IPDIYKRLVFETARIMQLFYMQGDGLTLS 767
Query: 413 DNS--KNRVLPLLIHPI 427
+ K V L P+
Sbjct: 768 HDMEIKEHVKNCLFQPV 784
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 223/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 182
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +F ALG +EPQ+ R M K ++I+ VDD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 421
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I+R+ +D AT E RG + I+C M + G S +A +
Sbjct: 422 DFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHT-VQDNSKN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T ++ K
Sbjct: 482 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKP 536
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 537 HIINLLVDSIK 547
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 222/431 (51%), Gaps = 18/431 (4%)
Query: 2 DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
DE GKFK L D+ G+ I +A+ F+T HLE
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTIHLES-------AAPHL 182
Query: 62 GGYFSALVKHALELPLHWRMVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQD 120
V HALE LH + R+E R+FI +Y++ N VL+ AKLDFN +Q H+
Sbjct: 183 KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ 242
Query: 121 ELKYVSWWWRKTG-LGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
EL VS WW+ + L +ARDR+VE +F ALG +EPQ+ R M K ++I+ VDD
Sbjct: 243 ELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDD 302
Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
+D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + + H+V
Sbjct: 303 TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV 362
Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
+ + ++ +++ +E+ W+ GY P + EY+ NA + + + +Y L A E+
Sbjct: 363 CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQ 421
Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
++L + P I+ +I R+ +D AT E RG + I+C M + G S +A +
Sbjct: 422 DFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQ 481
Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTY-QNGDGHT-VQDNSKN 417
++ AW +N EG P + F+ +NLAR+ + TY N DG+T ++ K
Sbjct: 482 NMAETAWKDIN---EGLLRPTP--VSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKP 536
Query: 418 RVLPLLIHPIK 428
++ LL+ IK
Sbjct: 537 HIINLLVDSIK 547
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 193/374 (51%), Gaps = 20/374 (5%)
Query: 69 VKHALELPLHWRMVRLEARWFIDVYERG------------TDMNPVLVELAKLDFNSVQA 116
+++ +E P H + RLEAR +ID Y+ + N +ELAKLDFN VQ+
Sbjct: 388 IEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQS 447
Query: 117 AHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITT 176
HQ+ELK ++ WW+++G+ +++F R R+ E +F + +EP++ R TK+ L
Sbjct: 448 LHQEELKLLTRWWKESGMADINFTRHRVAEVYFSS--ATFEPEYSATRIAFTKIGCLQVL 505
Query: 177 VDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGV 236
DD+ D++ TLDEL+ FT V+RWD + + ++P M+ CF V E+ D +K QG
Sbjct: 506 FDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGR 565
Query: 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPA 296
++ +++K W ++ E +W +GYIPT +EY++ +SV L L+
Sbjct: 566 DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELV 625
Query: 297 KEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDAR 355
K++ ++ + ++ S+ +RL ND T E RG I CYM + GA+E DA
Sbjct: 626 KDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAI 685
Query: 356 LHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNS 415
HI ++ A + + + N +P F NL Q Y+ DG+ + +
Sbjct: 686 KHICRVVDRALKEASFEYFKPSND----IPMGCKSFIFNLRLCVQIFYKFIDGYGIANEE 741
Query: 416 -KNRVLPLLIHPIK 428
K+ + + I PI+
Sbjct: 742 IKDYIRKVYIDPIQ 755
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 69 VKHALELPLHWRMVRLEARWFIDVYERGTDM-------------NPVLVELAKLDFNSVQ 115
+ ALE+P + + R+E R++ID Y D+ N +ELAK D+N+ Q
Sbjct: 391 IGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQ 450
Query: 116 AAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALIT 175
A HQ E W+ + L E R ++E ++ A I+E + + R + K + L+
Sbjct: 451 AQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVK 510
Query: 176 TV 177
+
Sbjct: 511 AI 512
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 134 LGELHFARDRIVE---NFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDEL 190
L EL R+++ F +L ++ GY N L + V+D +L EL
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY--------NELQSLPKGVFDKLTSLKEL 162
Query: 191 EQFTNAVERWDVNAMDQLP--YYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWAD 248
+ N ++R A D+L +K+ + L E AFD+L + + ++ + W
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL--EKLKMLQLQENPWDC 219
Query: 249 MCKSFLLEAKW 259
C + AKW
Sbjct: 220 TCNGIIYMAKW 230
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 49 EYVKKHNXXXXXXGGYFSALVKHALELPLH--WRMVR 83
EY+KKH+ S LVKH ++ PLH W +VR
Sbjct: 12 EYIKKHHRHELVESQCSSTLVKH-IKAPLHLVWSIVR 47
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 49 EYVKKHNXXXXXXGGYFSALVKHALELPLH--WRMVR 83
EY+KKH+ S LVKH ++ PLH W +VR
Sbjct: 12 EYIKKHHRHELVESQCSSTLVKH-IKAPLHLVWSIVR 47
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
Length = 183
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 49 EYVKKHNXXXXXXGGYFSALVKHALELPLH--WRMVR 83
EY+KKH+ S LVKH ++ PLH W +VR
Sbjct: 12 EYIKKHHRHELVESQCSSTLVKH-IKAPLHLVWSIVR 47
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 258 KWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMI 317
KW+ Y +D+ IE W +++ P I + L AKE A +F ++ I +M
Sbjct: 290 KWFGDKYRFLIDQGIEGFWNAMNEPAIFYSSEGLAE--AKEFAGEFAKDTEGKIHPWAMQ 347
Query: 318 FRLANDLATSSDEVKR 333
++ D+ S ++ KR
Sbjct: 348 AKM-KDIVNSPEDYKR 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,960,728
Number of Sequences: 62578
Number of extensions: 533773
Number of successful extensions: 1213
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 31
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)