Query 014206
Match_columns 429
No_of_seqs 196 out of 865
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1E-130 3E-135 1027.9 38.2 416 1-429 137-554 (554)
2 3n0f_A Isoprene synthase; terp 100.0 8E-131 3E-135 1030.2 36.9 416 1-428 134-551 (555)
3 3m00_A Aristolochene synthase; 100.0 2E-129 7E-134 1017.3 38.3 415 1-429 132-550 (550)
4 2ong_A 4S-limonene synthase; m 100.0 2E-125 8E-130 994.1 41.6 417 1-428 124-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 5E-125 2E-129 991.4 37.1 419 1-428 127-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 9E-125 3E-129 992.1 34.3 415 1-428 151-569 (569)
7 3s9v_A Abietadiene synthase, c 100.0 2E-123 7E-128 1008.0 41.2 421 1-428 346-785 (785)
8 3sdr_A Alpha-bisabolene syntha 100.0 1E-123 5E-128 1013.1 35.6 423 1-429 374-817 (817)
9 3p5p_A Taxadiene synthase; cla 100.0 3E-122 9E-127 997.0 41.8 416 1-428 322-755 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 1.4E-88 5E-93 726.9 27.0 367 3-428 322-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 4.4E-52 1.5E-56 414.6 19.2 254 112-373 12-270 (337)
12 1di1_A Aristolochene synthase; 100.0 4.5E-50 1.5E-54 393.6 20.7 243 116-373 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2.4E-48 8.1E-53 385.0 19.6 249 110-373 20-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 8.4E-47 2.9E-51 383.1 20.4 242 125-372 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 4.7E-34 1.6E-38 292.5 16.2 247 119-372 128-389 (433)
16 1yyq_A Trichodiene synthase; t 99.8 4.2E-19 1.4E-23 178.3 13.8 250 122-399 32-295 (374)
17 3acx_A Dehydrosqualene synthas 86.9 21 0.00071 33.6 17.4 180 162-371 38-231 (293)
18 4hd1_A Squalene synthase HPNC; 86.7 22 0.00074 33.6 19.5 155 163-353 40-199 (294)
19 3lmd_A Geranylgeranyl pyrophos 80.6 13 0.00043 36.6 11.4 86 237-329 160-247 (360)
20 3ipi_A Geranyltranstransferase 80.3 21 0.00071 33.9 12.6 125 237-369 127-260 (295)
21 3rmg_A Octaprenyl-diphosphate 75.8 37 0.0013 32.7 13.1 88 237-329 133-221 (334)
22 3p8l_A Geranyltranstransferase 73.8 27 0.00092 33.3 11.4 112 247-371 156-279 (302)
23 3oyr_A Trans-isoprenyl diphosp 73.4 53 0.0018 31.8 13.6 88 237-330 151-240 (345)
24 2ftz_A Geranyltranstransferase 73.2 49 0.0017 31.1 13.0 120 238-371 135-264 (284)
25 3m0g_A Farnesyl diphosphate sy 70.8 15 0.00051 35.0 8.8 110 247-370 147-268 (297)
26 1rtr_A Geranyltranstransferase 70.7 23 0.00078 33.7 10.1 112 247-371 148-271 (301)
27 3ts7_A Geranyltranstransferase 68.8 35 0.0012 32.9 10.9 110 247-369 158-280 (324)
28 3lsn_A Geranyltranstransferase 67.1 31 0.0011 32.9 10.2 111 248-370 153-275 (304)
29 3mzv_A Decaprenyl diphosphate 67.0 93 0.0032 30.0 15.2 87 237-329 139-227 (341)
30 4f62_A Geranyltranstransferase 64.7 36 0.0012 32.6 10.1 111 248-371 152-275 (317)
31 2h8o_A Geranyltranstransferase 63.6 32 0.0011 33.2 9.6 111 247-370 192-314 (335)
32 3p8r_A Geranyltranstransferase 60.3 32 0.0011 32.7 8.8 112 247-370 158-281 (302)
33 1wy0_A Geranylgeranyl pyrophos 60.2 63 0.0021 31.1 11.1 85 238-328 138-224 (342)
34 3npk_A Geranyltranstransferase 59.3 1E+02 0.0036 28.9 12.2 112 246-370 144-265 (291)
35 3lom_A Geranyltranstransferase 58.6 51 0.0017 31.5 10.0 111 247-369 158-281 (313)
36 1rqj_A Geranyltranstransferase 58.2 72 0.0024 30.1 10.9 112 247-371 152-276 (299)
37 3uca_A Geranyltranstransferase 57.5 69 0.0024 30.7 10.7 113 247-371 180-304 (324)
38 3pko_A Geranylgeranyl pyrophos 57.3 64 0.0022 31.0 10.5 102 238-346 144-258 (334)
39 4dhd_A Polyprenyl synthetase; 54.4 80 0.0027 30.6 10.8 86 238-328 133-231 (358)
40 3pde_A Farnesyl-diphosphate sy 54.3 75 0.0026 30.3 10.3 111 248-371 156-278 (309)
41 1wmw_A Geranylgeranyl diphosph 49.8 87 0.003 29.9 10.1 84 238-328 131-218 (330)
42 3apz_A Geranyl diphosphate syn 49.1 84 0.0029 30.2 9.9 88 237-329 153-241 (348)
43 3llw_A Geranyltranstransferase 45.5 78 0.0027 30.1 8.9 113 246-370 158-280 (311)
44 3nf2_A Putative polyprenyl syn 44.4 64 0.0022 31.3 8.2 85 238-328 144-230 (352)
45 2q80_A Geranylgeranyl pyrophos 41.8 1.4E+02 0.0048 28.1 10.0 84 237-328 111-195 (301)
46 2j1p_A Geranylgeranyl pyrophos 38.6 35 0.0012 32.3 5.1 109 248-370 161-271 (293)
47 2e8v_A Geranylgeranyl pyrophos 37.6 81 0.0028 30.3 7.7 87 238-329 132-221 (340)
48 3aqb_B Component B of hexapren 34.9 1.1E+02 0.0039 29.0 8.3 88 237-329 130-218 (325)
49 3kra_B Geranyl diphosphate syn 33.7 66 0.0023 30.0 6.2 70 248-324 150-221 (274)
50 2azj_A Geranylgeranyl pyrophos 32.1 1.7E+02 0.0057 27.4 8.7 117 238-371 136-258 (289)
51 3fau_A NEDD4-binding protein 2 30.3 42 0.0014 25.0 3.4 23 347-369 6-28 (82)
52 1yhl_A Farnesyl pyrophosphate 30.3 1.5E+02 0.0052 28.6 8.4 88 238-329 152-257 (362)
53 1xkm_B Distinctin chain B; por 27.9 27 0.00093 19.8 1.4 11 84-94 7-17 (26)
54 1w53_A Phosphoserine phosphata 26.2 29 0.00098 26.6 1.8 30 15-49 11-40 (84)
55 2j6y_A Phosphoserine phosphata 25.5 29 0.001 28.0 1.8 31 15-50 11-41 (111)
56 2qis_A Farnesyl pyrophosphate 24.2 1.9E+02 0.0064 28.1 7.8 88 238-329 177-271 (374)
57 1v4e_A Octoprenyl-diphosphate 24.0 1.2E+02 0.0041 28.5 6.2 84 237-330 127-212 (299)
58 1tr8_A Conserved protein (MTH1 23.9 38 0.0013 26.8 2.2 23 338-360 67-89 (102)
59 1uby_A FPS, farnesyl diphospha 22.5 1.7E+02 0.0057 28.4 7.0 88 238-329 170-264 (367)
60 3tc1_A Octaprenyl pyrophosphat 20.4 2.8E+02 0.0097 26.1 8.0 84 237-329 122-207 (315)
61 3lk5_A Geranylgeranyl pyrophos 20.2 2.8E+02 0.0095 27.0 8.1 80 244-328 182-263 (380)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=9.8e-131 Score=1027.88 Aligned_cols=416 Identities=35% Similarity=0.600 Sum_probs=395.6
Q ss_pred CCCCCCCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCccccc
Q 014206 1 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWR 80 (429)
Q Consensus 1 ~~~~g~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~~ 80 (429)
||++|+|++++.+||+||||||||||+++||| +|||||+.||++||++++.+ ++++|+++|+|||++|||++
T Consensus 137 ~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~ 208 (554)
T 3g4d_A 137 KDEQGNFKSSVTSDVRGLLELYQASYLRVHGE-DILDEAISFTTHHLSLAVAS-------LDHPLSEEVSHALKQSIRRG 208 (554)
T ss_dssp BCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHSTT-------CCTTHHHHHHHHHHCCTTTS
T ss_pred cccCCCcccccccchHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHhc-------cCchHHHHHHHHhCCCccCC
Confidence 58899999999999999999999999999999 99999999999999998865 67889999999999999999
Q ss_pred cchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCCC
Q 014206 81 MVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQ 159 (429)
Q Consensus 81 ~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP~ 159 (429)
+||||||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+ |||+|||++|||||++|++|||+
T Consensus 209 l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~ 288 (554)
T 3g4d_A 209 LPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQ 288 (554)
T ss_dssp CHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGG
T ss_pred chHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999976 99999999999999999999999
Q ss_pred ccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcch
Q 014206 160 FGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239 (429)
Q Consensus 160 ~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~ 239 (429)
+|.+|+++||+++|++++||+||+|||++||+.||+||+|||++++++||+|||+||.+++++++|++.++.+.+|.+++
T Consensus 289 ~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~ 368 (554)
T 3g4d_A 289 YSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRV 368 (554)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHH
Q 014206 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFR 319 (429)
Q Consensus 240 ~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~R 319 (429)
+|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|++++|+|+++++.|+|
T Consensus 369 ~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~R 448 (554)
T 3g4d_A 369 EYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICR 448 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhh
Q 014206 320 LANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMA 399 (429)
Q Consensus 320 L~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~~ 399 (429)
|+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||++|++++ + +|++|+++++|++|++
T Consensus 449 L~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~-~----~p~~~~~~~~NlaR~~ 523 (554)
T 3g4d_A 449 FMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPT-E----MPTEVLNRSLNLARVM 523 (554)
T ss_dssp HHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSC-S----SCHHHHHHHHHHHHHH
T ss_pred HhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 5 9999999999999999
Q ss_pred hhhcccCCCCCCChh-HHHHHhhhccccCCC
Q 014206 400 QCTYQNGDGHTVQDN-SKNRVLPLLIHPIKS 429 (429)
Q Consensus 400 ~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~~ 429 (429)
+++|+++||||.|+. ||++|++||++|||.
T Consensus 524 ~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 524 DVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999965 999999999999984
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=7.5e-131 Score=1030.16 Aligned_cols=416 Identities=49% Similarity=0.877 Sum_probs=403.0
Q ss_pred CCCCCCCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCccccc
Q 014206 1 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWR 80 (429)
Q Consensus 1 ~~~~g~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~~ 80 (429)
||++|+|++++.+||+||||||||||+++||| +|||||++||++||++++.++ ++++|+++|+|||++|||++
T Consensus 134 ~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~------~~~~l~~~V~~aL~~P~~~~ 206 (555)
T 3n0f_A 134 KDQNGNFLENLKEDTKAILSLYEASFLALEGE-NILDEARVFAISHLKELSEEK------IGKELAEQVNHALELPLHRR 206 (555)
T ss_dssp BCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHTCCHHH------HCHHHHHHHHHHHHSCTTTS
T ss_pred cccCccchhhhhhhhHHHHHHHHHHhcccCCc-HHHHHHHHHHHHHHHHHHhcc------CCchHHHHHHHHhcCCcccC
Confidence 58899999999999999999999999999999 999999999999999876531 57889999999999999999
Q ss_pred cchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCCC
Q 014206 81 MVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQ 159 (429)
Q Consensus 81 ~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP~ 159 (429)
+||||||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+ |||+|||++|||||++|++|||+
T Consensus 207 l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~ 286 (555)
T 3n0f_A 207 TQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQ 286 (555)
T ss_dssp CHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGG
T ss_pred chHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999966 99999999999999999999999
Q ss_pred ccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcch
Q 014206 160 FGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239 (429)
Q Consensus 160 ~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~ 239 (429)
+|.+|++|||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|++.++.+++|++++
T Consensus 287 ~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~ 366 (555)
T 3n0f_A 287 YSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENIL 366 (555)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred chHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHH
Q 014206 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFR 319 (429)
Q Consensus 240 ~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~R 319 (429)
+|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|++++++++|+|
T Consensus 367 ~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~R 446 (555)
T 3n0f_A 367 PYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFR 446 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhh
Q 014206 320 LANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMA 399 (429)
Q Consensus 320 L~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~~ 399 (429)
|+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||++|++++ + +|++|+++++|++|++
T Consensus 447 L~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~-~----~p~~~~~~~~n~aR~~ 521 (555)
T 3n0f_A 447 LCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGS-L----FAKPFVETAINLARQS 521 (555)
T ss_dssp HHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCC-S----SCHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 5 9999999999999999
Q ss_pred hhhcccCCCCCCChh-HHHHHhhhccccCC
Q 014206 400 QCTYQNGDGHTVQDN-SKNRVLPLLIHPIK 428 (429)
Q Consensus 400 ~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~ 428 (429)
+++|+++||||.|+. ||++|++||++|||
T Consensus 522 ~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 522 HCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999975 99999999999997
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2e-129 Score=1017.30 Aligned_cols=415 Identities=34% Similarity=0.626 Sum_probs=399.3
Q ss_pred CCCCCCCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCccccc
Q 014206 1 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWR 80 (429)
Q Consensus 1 ~~~~g~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~~ 80 (429)
||++|+|++++.+||+||||||||||+++||| +|||||+.||++||++++.+ ++++|+++|+|||++|||++
T Consensus 132 ~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~ 203 (550)
T 3m00_A 132 QDENGKFKESLASDVLGLLNLYEASHVRTHAD-DILEDALAFSTIHLESAAPH-------LKSPLREQVTHALEQCLHKG 203 (550)
T ss_dssp BCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTC-GGGTTHHHHHHHHHHHHGGG-------CCTTHHHHHHHHHHSCSTTS
T ss_pred cccCCCccccchhchHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhc-------cCccHHHHHHHHhCCCccCC
Confidence 58899999999999999999999999999999 99999999999999999866 67889999999999999999
Q ss_pred cchhHHHHhHH-HhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCC
Q 014206 81 MVRLEARWFID-VYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEP 158 (429)
Q Consensus 81 ~~r~ear~yi~-~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP 158 (429)
+||+|||+||+ +|++++++|++||||||||||+||++||+||++++|||+++||.. |||+|||++|||||++|++|||
T Consensus 204 l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP 283 (550)
T 3m00_A 204 VPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEP 283 (550)
T ss_dssp CHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSG
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCc
Confidence 99999999999 999999999999999999999999999999999999999999966 9999999999999999999999
Q ss_pred CccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcc
Q 014206 159 QFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHV 238 (429)
Q Consensus 159 ~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~ 238 (429)
++|.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+++++|++.++.+.+|+++
T Consensus 284 ~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~ 363 (550)
T 3m00_A 284 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHI 363 (550)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred cchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHH
Q 014206 239 VPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIF 318 (429)
Q Consensus 239 ~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~ 318 (429)
++|++++|+++++||++||+|+++||+||+||||+||.+|+|++++++++++|+ +.+|+++++|+.++|+|+++++.|+
T Consensus 364 ~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~ 442 (550)
T 3m00_A 364 VCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIIC 442 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999988766 6699999999988999999999999
Q ss_pred HHhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhh
Q 014206 319 RLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARM 398 (429)
Q Consensus 319 RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~ 398 (429)
||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++++++ + +|++|+++++|++|+
T Consensus 443 RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~-~----~p~~~~~~~~NlaR~ 517 (550)
T 3m00_A 443 RVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPT-P----VSTEFLTPILNLARI 517 (550)
T ss_dssp HHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSC-S----SCGGGTHHHHHHHHH
T ss_pred eeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 5 999999999999999
Q ss_pred hhhhcccC-CCCCCChh-HHHHHhhhccccCCC
Q 014206 399 AQCTYQNG-DGHTVQDN-SKNRVLPLLIHPIKS 429 (429)
Q Consensus 399 ~~~~Y~~~-D~~t~~~~-~k~~i~~ll~~pi~~ 429 (429)
++++|+++ ||||.|+. ||++|++||++|||+
T Consensus 518 ~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 518 IEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 99999998 99999985 999999999999985
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=2.5e-125 Score=994.05 Aligned_cols=417 Identities=46% Similarity=0.862 Sum_probs=407.2
Q ss_pred CCCCCCCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCccccc
Q 014206 1 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWR 80 (429)
Q Consensus 1 ~~~~g~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~~ 80 (429)
||++|+|++++++||+|||||||||||++||| +|||||++||++||+++++++ .++++|++||+|||++|||++
T Consensus 124 k~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE-~iL~eA~~Ft~~~L~~~~~~~-----~~~~~l~~~V~~aL~~P~~~~ 197 (543)
T 2ong_A 124 KNEEGEFKESLSDDTRGLLQLYEASFLLTEGE-TTLESAREFATKFLEEKVNEG-----GVDGDLLTRIAYSLDIPLHWR 197 (543)
T ss_dssp BCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSC-HHHHHHHHHHHHHHHHHHHSS-----CSSSHHHHHHHHHHHSCTTTS
T ss_pred cCCCCCccchhhhccHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHhhhHhcc
Confidence 68999999999999999999999999999999 999999999999999998763 137899999999999999999
Q ss_pred cchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCCC
Q 014206 81 MVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQ 159 (429)
Q Consensus 81 ~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP~ 159 (429)
+||||||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+ +||+|||+++||||++|++|||+
T Consensus 198 l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~ 277 (543)
T 2ong_A 198 IKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQ 277 (543)
T ss_dssp CSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTT
T ss_pred chHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred ccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcch
Q 014206 160 FGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239 (429)
Q Consensus 160 ~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~ 239 (429)
+|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+.+|++++
T Consensus 278 ~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~ 357 (543)
T 2ong_A 278 HASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVI 357 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHH
Q 014206 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFR 319 (429)
Q Consensus 240 ~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~R 319 (429)
+|++++|++++++|++||+|+++|++||++|||++|.+|+|+++++++++++||..+|+++++|+.++|++++++++++|
T Consensus 358 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~R 437 (543)
T 2ong_A 358 PYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLR 437 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHhhh
Q 014206 320 LANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKR-EGDENPDHLLLPNNFVQFAMNLARM 398 (429)
Q Consensus 320 L~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~-l~~~~~~~~~~p~~~~~~~~n~~r~ 398 (429)
|+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++ ++++ + +|++|+++++|++|+
T Consensus 438 L~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~-~----vp~~~~~~~~n~aR~ 512 (543)
T 2ong_A 438 LADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDS-P----FGKDFIGCAVDLGRM 512 (543)
T ss_dssp HHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSC-S----SCHHHHHHHHHHHHH
T ss_pred HhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCC-C----CCHHHHHHHHHHHHe
Confidence 999999999999999999999999999999999999999999999999999999 9876 5 999999999999999
Q ss_pred hhhhcccCCCCCCChh-HHHHHhhhccccCC
Q 014206 399 AQCTYQNGDGHTVQDN-SKNRVLPLLIHPIK 428 (429)
Q Consensus 399 ~~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~ 428 (429)
++++|+++||||.|+. ||++|++||++|||
T Consensus 513 ~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 513 AQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred ehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 9999999999999976 99999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4.6e-125 Score=991.42 Aligned_cols=419 Identities=45% Similarity=0.813 Sum_probs=393.4
Q ss_pred CCCCC-CCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCcccc
Q 014206 1 MDEKG-KFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHW 79 (429)
Q Consensus 1 ~~~~g-~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~ 79 (429)
||++| +|++++++||+||||||||||+++||| +|||||++||++||+++++++. ..++++|++||+|||++|||+
T Consensus 127 k~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE-~iL~eA~~Ft~~~L~~~~~~~~---~~~~~~l~~~V~~aL~~P~~~ 202 (549)
T 1n1b_A 127 KNEKGIDFKASLAQDTKGMLQLYEASFLLRKGE-DTLELAREFATKCLQKKLDEGG---NEIDENLLLWIRHSLDLPLHW 202 (549)
T ss_dssp BCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCGGG
T ss_pred cCCCCCccchhhhhccHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhccc---ccCCCcHHHHHHHHhcCchhc
Confidence 68999 999999999999999999999999999 9999999999999999986521 012788999999999999999
Q ss_pred ccchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCC
Q 014206 80 RMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEP 158 (429)
Q Consensus 80 ~~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP 158 (429)
++||||||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+ +||+|||+++||||++|++|||
T Consensus 203 ~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP 282 (549)
T 1n1b_A 203 RIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 282 (549)
T ss_dssp CCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCST
T ss_pred CchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcc
Q 014206 159 QFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHV 238 (429)
Q Consensus 159 ~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~ 238 (429)
++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+.+|+++
T Consensus 283 ~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~ 362 (549)
T 1n1b_A 283 QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFC 362 (549)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHH-HHhhhcchHHHHHHHHH
Q 014206 239 VPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEA-LQFLQEYPHIIRWPSMI 317 (429)
Q Consensus 239 ~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~-~e~~~~~~~l~~~~~~i 317 (429)
++|++++|++++++|++||+|+++|++||+||||++|.+|+|+++++++++++||+.+|+++ ++|+.++|+++++++.+
T Consensus 363 ~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i 442 (549)
T 1n1b_A 363 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGII 442 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99988899999999999
Q ss_pred HHHhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhh
Q 014206 318 FRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLAR 397 (429)
Q Consensus 318 ~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r 397 (429)
+||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++++++ + +|++|+++++|++|
T Consensus 443 ~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~-~----vp~~~~~~~~n~~R 517 (549)
T 1n1b_A 443 LRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGY-P----FPDGMVAGAANIGR 517 (549)
T ss_dssp HHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC-S----SCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 5 99999999999999
Q ss_pred hhhhhcccCCCCCCChh-HHHHHhhhccccCC
Q 014206 398 MAQCTYQNGDGHTVQDN-SKNRVLPLLIHPIK 428 (429)
Q Consensus 398 ~~~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~ 428 (429)
+++++|+++||||.|+. ||++|++||++|||
T Consensus 518 ~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 518 VAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred eeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999999976 99999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=8.9e-125 Score=992.06 Aligned_cols=415 Identities=47% Similarity=0.824 Sum_probs=385.6
Q ss_pred CCCCC-CCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCcccc
Q 014206 1 MDEKG-KFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHW 79 (429)
Q Consensus 1 ~~~~g-~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~ 79 (429)
||++| +|++++++||+|||||||||||++||| +|||||++||++||++++++ .++++|++||+|||++|||+
T Consensus 151 kd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE-~iLdeA~~Ft~~~L~~~~~~------~~~~~l~~~V~~aL~~P~~~ 223 (569)
T 2j5c_A 151 KNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGE-ETLRLARDFATKFLQKRVLV------DKDINLLSSIERALELPTHW 223 (569)
T ss_dssp BCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHTTSSCC----------CHHHHHHHHHHHHSCGGG
T ss_pred cCCCCCccccchhhccHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhh------cCCCcHHHHHHHHhcCcccc
Confidence 68999 999999999999999999999999999 99999999999999988765 23789999999999999999
Q ss_pred ccchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCC
Q 014206 80 RMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEP 158 (429)
Q Consensus 80 ~~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP 158 (429)
++||||||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+ +||+|||+++||||++|++|||
T Consensus 224 ~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP 303 (569)
T 2j5c_A 224 RVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERR 303 (569)
T ss_dssp CCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCG
T ss_pred CcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcc
Q 014206 159 QFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHV 238 (429)
Q Consensus 159 ~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~ 238 (429)
++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+.+|+++
T Consensus 304 ~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~ 383 (569)
T 2j5c_A 304 QHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDS 383 (569)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHH
Q 014206 239 VPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIF 318 (429)
Q Consensus 239 ~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~ 318 (429)
++|++++|++++++|++||+|+.+|++||++|||++|.+|+|+++++++++++||..+|+++++|+.++|++++++++|+
T Consensus 384 ~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~ 463 (569)
T 2j5c_A 384 TPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTIL 463 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhh
Q 014206 319 RLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARM 398 (429)
Q Consensus 319 RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~ 398 (429)
||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||++|++ + + +|++|+++++|++|+
T Consensus 464 RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~-~----vp~~~~~~~~nlaR~ 537 (569)
T 2j5c_A 464 RLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-S-S----FSKYFVEVSANLARM 537 (569)
T ss_dssp HHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH-C-C----SCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-c-C----CCHHHHHHHHHHHhe
Confidence 999999999999999999999999999999999999999999999999999999999 6 5 999999999999999
Q ss_pred hhhhcccC-CCCCCChh-HHHHHhhhccccCC
Q 014206 399 AQCTYQNG-DGHTVQDN-SKNRVLPLLIHPIK 428 (429)
Q Consensus 399 ~~~~Y~~~-D~~t~~~~-~k~~i~~ll~~pi~ 428 (429)
++++|+++ ||||.|+. ||++|++||++|||
T Consensus 538 ~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 538 AQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred eehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999 99999976 99999999999997
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=2.2e-123 Score=1008.05 Aligned_cols=421 Identities=32% Similarity=0.546 Sum_probs=402.9
Q ss_pred CCCCCCCcccc---ccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCC-CCCCchHHHHHHHccCc
Q 014206 1 MDEKGKFKSCL---GDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDD-DDGGYFSALVKHALELP 76 (429)
Q Consensus 1 ~~~~g~F~~~~---~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~-~~~~~l~~~V~~aL~~P 76 (429)
+|++|+|++++ .+||+||||||||||++|||| +|||||++||++||++++.++...|| .++++|++||+|||++|
T Consensus 346 ~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P 424 (785)
T 3s9v_A 346 RDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGE-TIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYP 424 (785)
T ss_dssp BCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSC
T ss_pred HhcCCCeeeccccccccccccHHHHhHhhcCCCCc-HHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCc
Confidence 47899999876 699999999999999999999 99999999999999999988777888 67899999999999999
Q ss_pred cccccchhHHHHhHHHhccCCC------------CChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCCchhhhhhh
Q 014206 77 LHWRMVRLEARWFIDVYERGTD------------MNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRI 144 (429)
Q Consensus 77 ~~~~~~r~ear~yi~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~l~~aRdr~ 144 (429)
||+++||||||+||++|++++. +|++||||||||||+||++||+||++++|||+++||.++||+|||+
T Consensus 425 ~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ 504 (785)
T 3s9v_A 425 WHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERV 504 (785)
T ss_dssp GGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCSSSCCCH
T ss_pred cccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCcCccHHHHH
Confidence 9999999999999999998875 4999999999999999999999999999999999997799999999
Q ss_pred hhhhhhhhccccCCCccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHH
Q 014206 145 VENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTN 224 (429)
Q Consensus 145 ~e~yf~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ 224 (429)
+|||||++|++|||++|.+|++|||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 505 ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 505 TEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhh
Q 014206 225 EMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFL 304 (429)
Q Consensus 225 e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~ 304 (429)
|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|+
T Consensus 585 ei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~ 664 (785)
T 3s9v_A 585 DIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKI 664 (785)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcchHHHHHHHHHHHHhcccccchhHhhcCCCCchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 014206 305 QEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDARLHIRDLITAAWMKMNNKREGDENPDHLL 383 (429)
Q Consensus 305 ~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~ 383 (429)
..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|||+++++++|+++||+||+++++++
T Consensus 665 ~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~------ 738 (785)
T 3s9v_A 665 DRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK------ 738 (785)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------
T ss_pred cccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 5559999999999999999999999999999999999999999 999999999999999999999999999843
Q ss_pred CCHHHHHHHHHHhhhhhhhcccCCCCCCChh--HHHHHhhhccccCC
Q 014206 384 LPNNFVQFAMNLARMAQCTYQNGDGHTVQDN--SKNRVLPLLIHPIK 428 (429)
Q Consensus 384 ~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~--~k~~i~~ll~~pi~ 428 (429)
+|++|+++++|++|++++||+++||||.|+. ||++|++||++||.
T Consensus 739 ~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 739 IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 8999999999999999999999999999974 99999999999983
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.4e-123 Score=1013.13 Aligned_cols=423 Identities=34% Similarity=0.581 Sum_probs=396.7
Q ss_pred CCCCCCCcccc---ccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCC-CCCCchHHHHHHHccCc
Q 014206 1 MDEKGKFKSCL---GDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDD-DDGGYFSALVKHALELP 76 (429)
Q Consensus 1 ~~~~g~F~~~~---~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~-~~~~~l~~~V~~aL~~P 76 (429)
||++|+|++++ .+||+||||||||||++|||| +|||||++||++||++++.++...|| .++++|++||+|||++|
T Consensus 374 ~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P 452 (817)
T 3sdr_A 374 KDANGKFICSTGQFNKDVASMLNLYRASQLAFPGE-NILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTS 452 (817)
T ss_dssp BCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCC
T ss_pred hhcCCCceechhhhchhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCc
Confidence 57899999876 599999999999999999999 99999999999999999876544555 45688999999999999
Q ss_pred cccccchhHHHHhHHHhccCCC------------CChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCCchhhhhhh
Q 014206 77 LHWRMVRLEARWFIDVYERGTD------------MNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRI 144 (429)
Q Consensus 77 ~~~~~~r~ear~yi~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~l~~aRdr~ 144 (429)
||+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++||.++||+|||+
T Consensus 453 ~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ 532 (817)
T 3sdr_A 453 WHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERP 532 (817)
T ss_dssp STTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGCTTSCCCH
T ss_pred hhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCCcCccHHHHH
Confidence 9999999999999999998875 5999999999999999999999999999999999997799999999
Q ss_pred hhhhhhhhccccCCCccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHH
Q 014206 145 VENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTN 224 (429)
Q Consensus 145 ~e~yf~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ 224 (429)
+|||||++|++|||++|.+|++|||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 533 ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 533 LEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhH-HHHHHHHHhCCCccHHHHHh
Q 014206 225 EMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPV-ILLHAYSLIANPAKEEALQF 303 (429)
Q Consensus 225 e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~-l~~~~~~~~g~~l~~e~~e~ 303 (429)
|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ +++++++++|+.+|+++++|
T Consensus 613 e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~ 692 (817)
T 3sdr_A 613 EVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEK 692 (817)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998 88888899999999999999
Q ss_pred hh--cchHHHHHHHHHHHHhcccccchhHhhcCCCCchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 014206 304 LQ--EYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDARLHIRDLITAAWMKMNNKREGDENPD 380 (429)
Q Consensus 304 ~~--~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~ 380 (429)
+. ++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|||+++++++|+++||+||++|++++ +
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~-~- 770 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPD-D- 770 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCC-S-
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-C-
Confidence 65 345999999999999999999999999999999999999999 799999999999999999999999999976 5
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhcccCCCCCCChh-HHHHHhhhccccCCC
Q 014206 381 HLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDN-SKNRVLPLLIHPIKS 429 (429)
Q Consensus 381 ~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~~ 429 (429)
+|++|+++++|++|++++||+++||||.|+. ||++|++||++|||.
T Consensus 771 ---~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 771 ---VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred ---CCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999976 999999999999973
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.7e-122 Score=997.04 Aligned_cols=416 Identities=31% Similarity=0.532 Sum_probs=393.1
Q ss_pred CCCCCCCccc---cccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCcc
Q 014206 1 MDEKGKFKSC---LGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPL 77 (429)
Q Consensus 1 ~~~~g~F~~~---~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~ 77 (429)
+|++|+|+++ +.+||+||||||||||++|||| +|||||++||++||+++++++ ..++++|++||+|||++||
T Consensus 322 ~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~----~~~~~~L~~eV~~aL~~P~ 396 (764)
T 3p5p_A 322 KDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDE-RAMDDARKFAEPYLREALATK----ISTNTKLFKEIEYVVEYPW 396 (764)
T ss_dssp BCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHHHT----SCSSSHHHHHHHHHHHSCG
T ss_pred hcCCCCccccccccccccHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHhcc----CCCCccHHHHHHHHhcCch
Confidence 4789999874 6899999999999999999999 999999999999999998752 1367899999999999999
Q ss_pred ccccchhHHHHhHHHhccCCC------------CChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCCchhhhhhhh
Q 014206 78 HWRMVRLEARWFIDVYERGTD------------MNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIV 145 (429)
Q Consensus 78 ~~~~~r~ear~yi~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~l~~aRdr~~ 145 (429)
|+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++||.++||+|||++
T Consensus 397 ~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~~l~faRdr~v 476 (764)
T 3p5p_A 397 HMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVA 476 (764)
T ss_dssp GGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHH
T ss_pred hccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCCcCccHHHHHH
Confidence 999999999999999998865 59999999999999999999999999999999999977999999999
Q ss_pred hhhhhhhccccCCCccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHH
Q 014206 146 ENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNE 225 (429)
Q Consensus 146 e~yf~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e 225 (429)
|||||++| |||++|.+|++|||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|
T Consensus 477 e~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~e 554 (764)
T 3p5p_A 477 EVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEE 554 (764)
T ss_dssp HHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhh
Q 014206 226 MAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQ 305 (429)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~ 305 (429)
++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.+++++|+.+|+++++|+.
T Consensus 555 i~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~ 634 (764)
T 3p5p_A 555 VNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVH 634 (764)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHS
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cchHHHHHHHHHHHHhcccccchhHhhcCCCCchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCC
Q 014206 306 EYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDARLHIRDLITAAWMKMNNKREG-DENPDHLL 383 (429)
Q Consensus 306 ~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~eeA~~~i~~li~~~~k~ln~~~l~-~~~~~~~~ 383 (429)
.+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|||+++++++|+++||+||+++++ ++ +
T Consensus 635 ~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~-~---- 709 (764)
T 3p5p_A 635 YPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSN-D---- 709 (764)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCS-S----
T ss_pred hhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC-C----
Confidence 559999999999999999999999999999999999999999 7999999999999999999999999997 54 4
Q ss_pred CCHHHHHHHHHHhhhhhhhcccCCCCCCChh-HHHHHhhhccccCC
Q 014206 384 LPNNFVQFAMNLARMAQCTYQNGDGHTVQDN-SKNRVLPLLIHPIK 428 (429)
Q Consensus 384 ~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~ 428 (429)
+|++|+++++|++|+++|||+++||||.|+. ||++|++||++||+
T Consensus 710 ~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 755 (764)
T 3p5p_A 710 IPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQ 755 (764)
T ss_dssp SCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999876 99999999999997
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.4e-88 Score=726.90 Aligned_cols=367 Identities=20% Similarity=0.279 Sum_probs=322.5
Q ss_pred CCCCCccc---cccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCC-CCCCchHHHHHHHccCccc
Q 014206 3 EKGKFKSC---LGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDD-DDGGYFSALVKHALELPLH 78 (429)
Q Consensus 3 ~~g~F~~~---~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~-~~~~~l~~~V~~aL~~P~~ 78 (429)
++|+|++. +.+||+||||||||||+++||| +|||||+.||++||++.+.++...|| .++++|++||+|||++|||
T Consensus 322 ~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~ 400 (727)
T 3pya_A 322 KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPRE-EILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWY 400 (727)
T ss_dssp ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGG
T ss_pred CCCcccccccccccccHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHh
Confidence 57899843 4689999999999999999999 99999999999999999887777788 5578999999999999999
Q ss_pred cccchhHHHHhHHHhccCCC-------------CChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCCchhhhhhhh
Q 014206 79 WRMVRLEARWFIDVYERGTD-------------MNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIV 145 (429)
Q Consensus 79 ~~~~r~ear~yi~~Y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~l~~aRdr~~ 145 (429)
+++||||||+||++|+++++ +|++||||||||||+||++||+||++++||||++||.+|||+|||++
T Consensus 401 ~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~v 480 (727)
T 3pya_A 401 ASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELL 480 (727)
T ss_dssp GCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTCCHHHHH
T ss_pred cCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcccCCchhhHHH
Confidence 99999999999999997654 69999999999999999999999999999999999977999999999
Q ss_pred hhhhhhhccccCCCccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhcccc---------cccc---Cchh--
Q 014206 146 ENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVN---------AMDQ---LPYY-- 211 (429)
Q Consensus 146 e~yf~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~---------~~~~---lpe~-- 211 (429)
|||||++|++|||+||.+|++|||++++++++||+||+|| |||+.||+||+|||.+ +.+. .|+|
T Consensus 481 e~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~ 558 (727)
T 3pya_A 481 ECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQ 558 (727)
T ss_dssp HHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHH
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHH
Confidence 9999999999999999999999999999999999999999 9999999999999974 3332 2877
Q ss_pred hHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH
Q 014206 212 MKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL 291 (429)
Q Consensus 212 mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~ 291 (429)
||+||.+|+++++|++.++.+.||+++.+|++++|.++++++++|++ + +| |. +++..+..
T Consensus 559 mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae--llv~~I~l 618 (727)
T 3pya_A 559 ASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE--LMVKMIIL 618 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee--eeeeeeec
Confidence 89999999999999999999999999999999999999999999997 2 33 22 22333333
Q ss_pred h-CCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 292 I-ANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 292 ~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
+ |..+++ ++.+ +++..|.++++.||||+||+.+|++|+ ++++.+.|+..|++|+
T Consensus 619 ~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~ 673 (727)
T 3pya_A 619 MKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMV 673 (727)
T ss_dssp HSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHH
T ss_pred CCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHH
Confidence 3 677888 7766 678889999999999999999999977 5588999999999999
Q ss_pred HHhcCCCCCCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCChhHHHHHhhhccccCC
Q 014206 371 NKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIK 428 (429)
Q Consensus 371 ~~~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~k~~i~~ll~~pi~ 428 (429)
+.++++++ +++|++| |+.+|++.||.. ||++|. |+.||.+||++||-
T Consensus 674 ~lVl~~~~---~~ip~~~-----tf~~V~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 674 ELALSESD---TFRDVSI-----TFLDVAKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHSCCT---TTHHHHH-----HHHHHHHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHHhccCC---CCCCCcc-----cHHHHHHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 99998662 3599999 999999999986 999998 99999999999985
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=4.4e-52 Score=414.64 Aligned_cols=254 Identities=14% Similarity=0.085 Sum_probs=230.8
Q ss_pred HHHhhhhHHHHhhHh-HHHhhcCCCCchhhhhhhhhhhhhhhccccCCCccchhH-hhhhHHHHHHHhhhhhccC--CCH
Q 014206 112 NSVQAAHQDELKYVS-WWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRR-MSTKVNALITTVDDVYDVY--GTL 187 (429)
Q Consensus 112 n~~Q~~hq~El~~l~-rW~~~~~l~~l~~aRdr~~e~yf~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~--gt~ 187 (429)
..-++.|.+|++..+ +||+++|+.+.+|+|+|++++|||.++++|+|+++.+|+ ++||+++|+|++||+||.+ ||+
T Consensus 12 p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ 91 (337)
T 1ps1_A 12 PGRQSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENP 91 (337)
T ss_dssp CCCCCTTHHHHHHSTTHHHHHTTSCCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCH
Confidence 334566888887777 699999998789999999999999999999999999999 9999999999999999997 699
Q ss_pred HHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCC-
Q 014206 188 DELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIP- 266 (429)
Q Consensus 188 eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iP- 266 (429)
+|++.|++++.+|+.+ .+|+++++++.++.+++++++.. .++...++++++|.+|++++++||+|+.+|++|
T Consensus 92 ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~ 164 (337)
T 1ps1_A 92 EDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCD 164 (337)
T ss_dssp HHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999864 48999999999999999998754 345567899999999999999999999999999
Q ss_pred CHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcCCCCchhhhhhhc
Q 014206 267 TLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 346 (429)
Q Consensus 267 t~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e 346 (429)
|++||+++|++|+|++++++++++++|..+|++++++ +.+++++++++.++||+|||+||+||+++|+++|+|.|||++
T Consensus 165 s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~ 243 (337)
T 1ps1_A 165 SAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRRE 243 (337)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHH
T ss_pred CHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999988 567899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 014206 347 TGASESDARLHIRDLITAAWMKMNNKR 373 (429)
Q Consensus 347 ~g~s~eeA~~~i~~li~~~~k~ln~~~ 373 (429)
+|+|+|+|+++++++|+++||+||+..
T Consensus 244 ~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 244 HGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=4.5e-50 Score=393.55 Aligned_cols=243 Identities=12% Similarity=0.021 Sum_probs=223.7
Q ss_pred hhhHHHHhhHh-HHHhhcCCCCchhhhhhhhhhhhhhhccccCCCccchhH-hhhhHHHHHHHhhhhhccCCCHHHHHHH
Q 014206 116 AAHQDELKYVS-WWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRR-MSTKVNALITTVDDVYDVYGTLDELEQF 193 (429)
Q Consensus 116 ~~hq~El~~l~-rW~~~~~l~~l~~aRdr~~e~yf~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~gt~eel~~~ 193 (429)
.-|.+|++... +||+++|+.+.+|+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 34778888877 577999998789999999999999999999999999999 999999999999999999 789999999
Q ss_pred HHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 014206 194 TNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIE 273 (429)
Q Consensus 194 t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~ 273 (429)
++++.+|+.+ +.+|++|++++.++++++++++..+. .+.++.|+.++++++ |++|+..|++||++||++
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999875 46899999999999999999987652 256777999999997 899999999999999999
Q ss_pred hccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcCC--------CCchhhhhhh
Q 014206 274 NAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGD--------VPKAIQCYMH 345 (429)
Q Consensus 274 ~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~~yM~ 345 (429)
+|++|+|++++++++++++|..+|+++++. .++++++++.++||+|||+||+||+++|+ ++|+|.|||+
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~ 236 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLRLSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAE 236 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCCCCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHH
Confidence 999999999999999999999999999983 69999999999999999999999999998 7799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 014206 346 ETGASESDARLHIRDLITAAWMKMNNKR 373 (429)
Q Consensus 346 e~g~s~eeA~~~i~~li~~~~k~ln~~~ 373 (429)
++|+|+|+|+++++++|++.|+++|+..
T Consensus 237 ~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 237 ESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.4e-48 Score=385.03 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=223.4
Q ss_pred hhHHHhhhhHHHHhhHh-HHHhhcCCCCchhhhhhhhhhhhhhhccccCCCccchhH-hhhhHHHHHHHhhhhhccCCCH
Q 014206 110 DFNSVQAAHQDELKYVS-WWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRR-MSTKVNALITTVDDVYDVYGTL 187 (429)
Q Consensus 110 dFn~~Q~~hq~El~~l~-rW~~~~~l~~l~~aRdr~~e~yf~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~gt~ 187 (429)
.|..-...|.+|++... +||+++|+...||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |++
T Consensus 20 p~p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~ 98 (320)
T 3bny_A 20 TFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSF 98 (320)
T ss_dssp SCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CCh
Confidence 34445567888998887 577999997679999999999999998899999999999 999999999999999999 789
Q ss_pred HHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 014206 188 DELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPT 267 (429)
Q Consensus 188 eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt 267 (429)
+|++.|++++.+|+.+ +.+|++|++++.++++++++++... + .+.++.|+.++ ++++|++|+..|++||
T Consensus 99 ~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps 167 (320)
T 3bny_A 99 EEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMG 167 (320)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCC
T ss_pred hhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCC
Confidence 9999999999999864 3589999999999999999998664 2 24455566677 5999999999999999
Q ss_pred HHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcCC--------CCch
Q 014206 268 LDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGD--------VPKA 339 (429)
Q Consensus 268 ~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~ 339 (429)
++||+++|++|+|++++++++++++|..+|+++++. .++++++++.++||+|||+||+||+++|+ ++|+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 999999999999999999999999999999999983 79999999999999999999999999998 7899
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 014206 340 IQCYMHETGASESDARLHIRDLITAAWMKMNNKR 373 (429)
Q Consensus 340 V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~ 373 (429)
|.|||+++|+|+|+|++++++++++.|+++|+..
T Consensus 245 V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 245 VQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=8.4e-47 Score=383.13 Aligned_cols=242 Identities=9% Similarity=-0.021 Sum_probs=222.5
Q ss_pred HhHHHhhcCCCCchhhhhhhhhhhhhhhccccCCCccchhH-hhhhHHHHHHHhhhhhcc--CC-CHHHHHHHHHHHhhc
Q 014206 125 VSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRR-MSTKVNALITTVDDVYDV--YG-TLDELEQFTNAVERW 200 (429)
Q Consensus 125 l~rW~~~~~l~~l~~aRdr~~e~yf~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~--~g-t~eel~~~t~ai~rW 200 (429)
+.+||+++|+..-+++|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.+++++.++
T Consensus 66 ~~~W~~~~gl~~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~ 145 (382)
T 3kb9_A 66 TRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTA 145 (382)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHH
Confidence 45799999998778899999999999999999999999999 999999999999999996 56 999999999999885
Q ss_pred cccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccch
Q 014206 201 DVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVS 280 (429)
Q Consensus 201 d~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g 280 (429)
-.. ...+|+++++++.++.+++++++..+. +...++++++|++++++|++||+|+.+|++||++||+++|++|+|
T Consensus 146 l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~----~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g 220 (382)
T 3kb9_A 146 LDS-PGDHLHHEDTLVAGFADSVRRLYAFLP----ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFA 220 (382)
T ss_dssp HHS-CGGGTTCSSHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred hcC-CCCCCCCCChHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcC
Confidence 211 223588999999999999999864432 335789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHH
Q 014206 281 GPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 360 (429)
Q Consensus 281 ~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~ 360 (429)
++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++++
T Consensus 221 ~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~ 299 (382)
T 3kb9_A 221 HWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRR 299 (382)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999998 66899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014206 361 LITAAWMKMNNK 372 (429)
Q Consensus 361 li~~~~k~ln~~ 372 (429)
+|+++||+||+.
T Consensus 300 ~i~~~~k~~~~~ 311 (382)
T 3kb9_A 300 RVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=4.7e-34 Score=292.47 Aligned_cols=247 Identities=12% Similarity=0.053 Sum_probs=188.5
Q ss_pred HHHHhhHh-HHHhhcCCCCchhhhhhhhhhhhhhhccccCCCc-cchhH-hhhhHHHHHHHhhhhh-ccCC-CHHH-HHH
Q 014206 119 QDELKYVS-WWWRKTGLGELHFARDRIVENFFWALGEIWEPQF-GYCRR-MSTKVNALITTVDDVY-DVYG-TLDE-LEQ 192 (429)
Q Consensus 119 q~El~~l~-rW~~~~~l~~l~~aRdr~~e~yf~~~a~~feP~~-s~~Rl-~~ak~~~l~~~iDD~~-D~~g-t~ee-l~~ 192 (429)
-+|++.-. .|..++++..-+-.|+++..+.|-.++.+..|.. +.+|| +.+|++.|+|++||.| |..| +.+. ...
T Consensus 128 ~~ev~~~~~~W~~~~~~l~~~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~ 207 (433)
T 3v1v_A 128 VEEVSRRIKRWAEDEVQLYPEEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGR 207 (433)
T ss_dssp HHHHHHHHHHHHHHTSCCCC----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHH
Confidence 34665444 6999976643233578888888844444444999 79999 9999999999999994 9754 3332 112
Q ss_pred HHH---HHhhccccccccCch-----hhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 014206 193 FTN---AVERWDVNAMDQLPY-----YMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGY 264 (429)
Q Consensus 193 ~t~---ai~rWd~~~~~~lpe-----~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~ 264 (429)
+.. ++..... ..+.-|. .-.++..+++++++++...+.+ ....+++++|++|+++|++||+|+..|+
T Consensus 208 l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 208 LLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222 2221110 0010010 0124578889999998765444 3467999999999999999999999999
Q ss_pred CCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcC-CCCchhhhh
Q 014206 265 IPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRG-DVPKAIQCY 343 (429)
Q Consensus 265 iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G-~~~n~V~~y 343 (429)
+||++|||++|++| |+.+++.++.+++|..+|++++++ +..++|+++++.++||+|||+||+||+++| +++|+|.||
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~ 360 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVI 360 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHH
Confidence 99999999999999 666666678888999999999988 568899999999999999999999999995 788999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 014206 344 MHETGASESDARLHIRDLITAAWMKMNNK 372 (429)
Q Consensus 344 M~e~g~s~eeA~~~i~~li~~~~k~ln~~ 372 (429)
|+++|+|+|||+++++++++++++++.+.
T Consensus 361 mke~g~S~eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 361 AEREQLCERDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988865
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.79 E-value=4.2e-19 Score=178.30 Aligned_cols=250 Identities=11% Similarity=-0.008 Sum_probs=181.0
Q ss_pred HhhHhHHHhhcC------------CCCchhhhhhhhhhhhhhhccccCCCccchhH-hhhhHHHHHHHhhhhhccCCCHH
Q 014206 122 LKYVSWWWRKTG------------LGELHFARDRIVENFFWALGEIWEPQFGYCRR-MSTKVNALITTVDDVYDVYGTLD 188 (429)
Q Consensus 122 l~~l~rW~~~~~------------l~~l~~aRdr~~e~yf~~~a~~feP~~s~~Rl-~~ak~~~l~~~iDD~~D~~gt~e 188 (429)
-.+..+|..+.| +..-+-..++++.+-.|.++..| |..+.+.+ .++++.+|+|++||++|..+ +
T Consensus 32 r~~~l~w~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 32 RIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHSCCCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHHHhccchhcccccccccccCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 334448998888 43223355677777778777777 99999998 88999999999999999654 6
Q ss_pred HHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCH
Q 014206 189 ELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTL 268 (429)
Q Consensus 189 el~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~ 268 (429)
++..|.+.+.+ +.. |+ .++..++.+.+.++ .+..++.+..++.++|.+|+.+++.|+.. .+..|+.
T Consensus 109 ~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl----~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 109 TMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNV----LRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 67777777654 211 11 14556666666654 44456677889999999999999999863 6778999
Q ss_pred HHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhc-CCCCchhhhhhhcC
Q 014206 269 DEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKR-GDVPKAIQCYMHET 347 (429)
Q Consensus 269 eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~-G~~~n~V~~yM~e~ 347 (429)
++|...++.++|......... .+..+.++.... +.+..++.....++.|+|||.||.||... |+.+|.|.+++.++
T Consensus 175 ~~Y~~~rR~~sG~~E~~~~~~--~P~~~~~e~~~~-~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~ 251 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCVGASL--WPKEQFNERSLF-LEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSD 251 (374)
T ss_dssp TTHHHHHHHHHHCHHHHHHTT--CCTTTCCTTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHhh--ccccccchhhcc-hhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcC
Confidence 999999998888754433211 222222221111 23456677777799999999999999984 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhh
Q 014206 348 GASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMA 399 (429)
Q Consensus 348 g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~~ 399 (429)
|+|.++|++++..++..+..++.+ .+.+. .|. +++.+-++.|.-
T Consensus 252 g~S~~eAl~~v~~~~~~~~~r~~~-~L~~~------~~~-~l~al~~~irG~ 295 (374)
T 1yyq_A 252 EISLHEALEKLTQDTLHSSKQMVA-VFSDK------DPQ-VMDTIECFMHGY 295 (374)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH-HHSSS------CHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HhccC------CHH-HHHHHHHHHhHh
Confidence 999999999999999998888865 34332 343 555555555543
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=86.85 E-value=21 Score=33.63 Aligned_cols=180 Identities=10% Similarity=0.078 Sum_probs=94.6
Q ss_pred chhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhh-cccccc-c-cCchhhHHHHHHHhhhHHHHHHHHHhhcCCcc
Q 014206 162 YCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVER-WDVNAM-D-QLPYYMKMCFHVLHSSTNEMAFDALKDQGVHV 238 (429)
Q Consensus 162 ~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~r-Wd~~~~-~-~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~ 238 (429)
..|-.+.-+-.+.-.+||+=|......+|+.+-+.+.+ .++... . ..|+ .++..++.+++.+. +
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~--- 104 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------N--- 104 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------C---
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------C---
Confidence 45665566777777899999976444446666666654 121110 0 0022 35667776655442 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHH
Q 014206 239 VPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIF 318 (429)
Q Consensus 239 ~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~ 318 (429)
--++.+.+++.|+-+. ......+|++|+......+.|.--.+++-.+ |..-.++..+.. ..+..+..++.
T Consensus 105 --l~~~~~~~li~g~~~D---l~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~~A---~~lG~AlQltN 174 (293)
T 3acx_A 105 --IAFQSFYNLIDTVYKD---QHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVA---RRLGESLQLIN 174 (293)
T ss_dssp --CCHHHHHHHHHHHHHH---TTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHHHH---HHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHHHH---HHHHHHHHHHH
Confidence 1134456667776533 3344578988888877777775444433333 332112332221 22333333222
Q ss_pred HHhcccccchhHhhcCCC--CchhhhhhhcCCCCHHH---------HHHHHHHHHHHHHHHHHH
Q 014206 319 RLANDLATSSDEVKRGDV--PKAIQCYMHETGASESD---------ARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 319 RL~NDi~S~~~E~~~G~~--~n~V~~yM~e~g~s~ee---------A~~~i~~li~~~~k~ln~ 371 (429)
++.|+ .....+|-+ +. =.|.++|++.++ ..+.+..++..+..-+.+
T Consensus 175 -ilRDv---~eD~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 175 -ILRDV---GEDFENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp -HHHCH---HHHHHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH---HHHHhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344 344556643 32 246678999876 234566666666655554
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=86.68 E-value=22 Score=33.63 Aligned_cols=155 Identities=15% Similarity=0.215 Sum_probs=79.9
Q ss_pred hhHhhhhHHHHHHHhhhhhccC-CC-HHHHHHHHHHHhh-ccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcch
Q 014206 163 CRRMSTKVNALITTVDDVYDVY-GT-LDELEQFTNAVER-WDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239 (429)
Q Consensus 163 ~Rl~~ak~~~l~~~iDD~~D~~-gt-~eel~~~t~ai~r-Wd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~ 239 (429)
.|-.+.-+-.+.=.+||+-|.. +. ...|+.+-+.+.+ ..+. |. .+++.++.+++.+..
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~------------ 100 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN------------ 100 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC------------
Confidence 3444444556677899999974 33 3345555555544 1111 21 256777766665432
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHH
Q 014206 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFR 319 (429)
Q Consensus 240 ~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~R 319 (429)
--++.+.+++.|+.+... ....+|++|+......+.|.--.+++-. +|.. +++.... -...+...-
T Consensus 101 -l~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i--~g~~-~~~~~~~-------A~~lG~AlQ 166 (294)
T 4hd1_A 101 -LPMEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGI--FGCL-DDERARL-------SDATCTALQ 166 (294)
T ss_dssp -CCSHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHH--TTCC-SHHHHHH-------HHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHH--hCCC-CHHHHHH-------HHHHHHHHH
Confidence 012345566777654443 3456888887777766666433333333 3332 2333322 112222333
Q ss_pred HhcccccchhHhhcCCC--CchhhhhhhcCCCCHHH
Q 014206 320 LANDLATSSDEVKRGDV--PKAIQCYMHETGASESD 353 (429)
Q Consensus 320 L~NDi~S~~~E~~~G~~--~n~V~~yM~e~g~s~ee 353 (429)
|.|=+........+|-+ +. -.|.++|+|.++
T Consensus 167 ltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 167 VANHMQDIDRDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp HHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred HHHHHHhchhhhccCceeCCH---HHHHHcCCCHHH
Confidence 33333333444556643 32 257788999876
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=80.58 E-value=13 Score=36.55 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
.+...+.+++..++.|-..+..|.... ||+++|+..-..-+|....... ..+ ++ ..+++..+. ...+-...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~-~lga~la-ga~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAG-YLGAMHA-GAAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 456788888999999999999987554 9999999877665554432221 111 12 135555544 35778888
Q ss_pred HHHHHHhcccccchh
Q 014206 315 SMIFRLANDLATSSD 329 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~ 329 (429)
++..-+.||+..+.-
T Consensus 233 G~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccC
Confidence 888899999977643
No 20
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=80.27 E-value=21 Score=33.93 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=69.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
.+...+.++...++.|-..+..|... .||.++|+..-..-+|.....+ +..| ++ ..+++..+. ...+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~la-g~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTG-GAEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 34556777778888998888888643 4899999987665555432221 1111 12 235555544 35778888
Q ss_pred HHHHHHhcccccchhHhh-----cCCCCchhhhhhhcCCC--CHHHHHHHHHHHHHHHHHHH
Q 014206 315 SMIFRLANDLATSSDEVK-----RGDVPKAIQCYMHETGA--SESDARLHIRDLITAAWMKM 369 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~E~~-----~G~~~n~V~~yM~e~g~--s~eeA~~~i~~li~~~~k~l 369 (429)
++..-+.||+..+..... .|. .+...+|..+.+- ..+.|.+.+++.++++.+.+
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L 260 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETL 260 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 888899999988754432 232 3666666654321 13445555555555554433
No 21
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=75.78 E-value=37 Score=32.74 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=58.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHH-HHhCCCccHHHHHhhhcchHHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY-SLIANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~-~~~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
.+...+.++...++.|-..+..|.. ...||.++|+..-..-+|.....+... ..++ ..+++..+. ...+....+
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG 207 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSV-QVGEEEVAF---ARLLGEYIG 207 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 4567788888999999999988853 345899999988776666443222111 1122 235555544 357888888
Q ss_pred HHHHHhcccccchh
Q 014206 316 MIFRLANDLATSSD 329 (429)
Q Consensus 316 ~i~RL~NDi~S~~~ 329 (429)
...-+.||+..+..
T Consensus 208 ~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 208 ICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHhccCCC
Confidence 89999999988763
No 22
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=73.82 E-value=27 Score=33.25 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|. +..||.++|...-..-+|...... +..| ++ ..+++..+. ..++-...++..-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFA-LIAGGVLA-NQTEEVIGL---LTQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34667777777774 347899999987544334322211 1111 22 235555544 357788888888999999
Q ss_pred ccchhHhh-cC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEVK-RG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 325 ~S~~~E~~-~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
..+.-+.+ .| |. .+...++ ..+.|.+.+++.++++.+.+..
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKSTYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87743321 11 21 1333333 5789999999999999877665
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=73.36 E-value=53 Score=31.80 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
.+...+.++...++.|-..+..|.. +..||.++|+..-..-+|...... +..| ++ ..+++..+. ...+-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~---l~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEA---LRDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 4566778888899999998888853 446899999987766665442222 2221 12 235555544 35788888
Q ss_pred HHHHHHhcccccchhH
Q 014206 315 SMIFRLANDLATSSDE 330 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~E 330 (429)
++..-+.||+..+.-+
T Consensus 225 G~aFQi~DD~lD~~~d 240 (345)
T 3oyr_A 225 GLAFQLADDALDYGGA 240 (345)
T ss_dssp HHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999888543
No 24
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=73.16 E-value=49 Score=31.07 Aligned_cols=120 Identities=7% Similarity=0.028 Sum_probs=77.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHH--HHHHhCCCccHHHHHhhhcchHHHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLH--AYSLIANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
+...+.++...++.|-..+..|......||.++|+..-..-+|....... .-...|. +++ . ..++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~--~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX--DHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--Chh---H---HHHHHHHHH
Confidence 55677777789999999999997654478999999877665554322211 1111232 333 2 346778888
Q ss_pred HHHHHhcccccchhHhh-cC-----CC--CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 316 MIFRLANDLATSSDEVK-RG-----DV--PKAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 316 ~i~RL~NDi~S~~~E~~-~G-----~~--~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
+..-+.||+..+.-+.+ .| |+ .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999988865432 23 22 2333332 3678899999999999877765
No 25
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=70.83 E-value=15 Score=34.98 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHH--HHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLH--AYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|...+..||.++|+..-..-+|....... .-...| .+++ . ..++-...++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG---P---LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH---H---HHHHHHHHHHHHHHHHHH
Confidence 55778888888887556789999999875544443222111 111122 2333 1 346778888888999999
Q ss_pred ccchhHhh-cC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEVK-RG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 325 ~S~~~E~~-~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
..+.-+.+ .| |. .+.+.++ ..+.|.+.+++.++++...+.
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp C---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 88754321 11 22 2444333 347788888888888865554
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=70.75 E-value=23 Score=33.70 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHH--HHhCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY--SLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|... .+|.++|+..-..-+|......... ...| .+++..+. ..++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577777777777543 7899999988766555432221111 1122 45665544 357788888899999999
Q ss_pred ccchhHhh-cC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEVK-RG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 325 ~S~~~E~~-~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
..+.-+.+ .| |. .+.+.++ ..+.|.+.+++.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLL------GKDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88754322 12 21 2444333 2578888888888888766654
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=68.76 E-value=35 Score=32.86 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|.. ..||.++|+..-..-+|..... .+..| ++...+++..+. ..++-...++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~-a~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRA-SVRLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHH-HHHHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHH-HHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456777777777754 3789999998755444433222 12222 222245555544 357788888888999999
Q ss_pred ccchhHh-----------hcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEV-----------KRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKM 369 (429)
Q Consensus 325 ~S~~~E~-----------~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~l 369 (429)
..+.-+. ..|. .+.+.+| ..+.|.+.+++.++++...+
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L 280 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNK-PNYPALL------GLSGAKEKAEEMHEAALESL 280 (324)
T ss_dssp HHHTCC---------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 7764321 2222 2445444 46888888888888875443
No 28
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=67.14 E-value=31 Score=32.85 Aligned_cols=111 Identities=10% Similarity=0.034 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhcccc
Q 014206 248 DMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDLA 325 (429)
Q Consensus 248 ~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~ 325 (429)
.++.|-..+..|.. ..||.++|+..-..-+|...... +..| ++...+++..+. ..++-...++..-+.||+.
T Consensus 153 ~~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 153 GMVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp THHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 36777777777754 35899999988544444322211 1111 222225555544 3577888888889999998
Q ss_pred cchhHh-hcC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 326 TSSDEV-KRG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 326 S~~~E~-~~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
.+.-+. ..| |. .+.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 227 D~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 227 DVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 875432 112 21 2444443 568888888888888865443
No 29
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=67.03 E-value=93 Score=29.95 Aligned_cols=87 Identities=17% Similarity=0.083 Sum_probs=57.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
.+...+.++...++.|-..+..|.. +..||.++|+..-..-+|.....+ +..| ++ ..+++..+. ...+....
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIG-GAPEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 4566777888889999999988863 456899999987666555432221 1111 12 235555544 35778888
Q ss_pred HHHHHHhcccccchh
Q 014206 315 SMIFRLANDLATSSD 329 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~ 329 (429)
++..-+.||+..+.-
T Consensus 213 G~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888899999987753
No 30
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=64.73 E-value=36 Score=32.62 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhcccc
Q 014206 248 DMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDLA 325 (429)
Q Consensus 248 ~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~ 325 (429)
.++.|-..+..|. +..||.++|+..-..-+|...... +..| ++...+++..+. ..++-...++..-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777775 345899999988654444322221 1221 222245555544 3577888888889999998
Q ss_pred cchhHh-----------hcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 326 TSSDEV-----------KRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 326 S~~~E~-----------~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
.+.-+. ..|. .+.+.+| ..+.|.+.+++.++++...+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 875432 1222 2445444 4688889999988888766553
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=63.60 E-value=32 Score=33.24 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHH--HHhCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY--SLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|... .+|.++|+..-..-+|......... ...| .+++..+. ..++-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5677788888888654 7899999988776555432221111 1122 35555544 357788888899999999
Q ss_pred ccchhHhh-cC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEVK-RG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 325 ~S~~~E~~-~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
..+.-+.+ .| |+ .+.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 87753321 12 11 2444433 357888888888888876554
No 32
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=60.31 E-value=32 Score=32.70 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|. +..||.++|+..-..-+|..... .+..| ++...+++..+. ..++-...+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~-~~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRC-AIRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHH-HHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677888888885 45789999998865444433222 11221 121123333333 356778888888999999
Q ss_pred ccchhHh-hcC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEV-KRG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 325 ~S~~~E~-~~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
..+.-+. ..| |. .+.+.+| ..+.|.+.+++.++++.+.++
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8764332 112 11 2444443 368888888888888876654
No 33
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=60.16 E-value=63 Score=31.09 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHH--HHhCCCccHHHHHhhhcchHHHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY--SLIANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
+...+.++...++.|-..+..|... ...|.++|+..-..-+|......... ...| .+++..+. ..++-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKK-STVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4556777788899999999999753 34599999988776555433221111 1122 35555544 357888888
Q ss_pred HHHHHhcccccch
Q 014206 316 MIFRLANDLATSS 328 (429)
Q Consensus 316 ~i~RL~NDi~S~~ 328 (429)
+..-+.||+..+.
T Consensus 212 ~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 212 IAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8999999998774
No 34
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=59.27 E-value=1e+02 Score=28.91 Aligned_cols=112 Identities=10% Similarity=0.019 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhcc
Q 014206 246 WADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLAND 323 (429)
Q Consensus 246 w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ND 323 (429)
...++.|-..+..|. +..||.++|...-..-+|.....+ +..+ ++ ..+++..+. ..++-+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455667766666774 346899999987554444332221 1111 12 235554444 35778888888899999
Q ss_pred cccchhHh-hcCCCC-------chhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 324 LATSSDEV-KRGDVP-------KAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 324 i~S~~~E~-~~G~~~-------n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
+..+.-+. ..|... +.+.+ ...+.|.+..+++++++.+.++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l------~~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNL------LGLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHC----------------CCHHHH------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHH------HHHHHhHHHHHHHHHHHHHHHH
Confidence 98775432 223221 22222 1457788888888888876654
No 35
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=58.64 E-value=51 Score=31.46 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccch-hhHHHHHHHHHhCCC-ccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVS-GPVILLHAYSLIANP-AKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g-~~~l~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|.. ...||.++|+..-..-+| ...+.+.+ ..++.. .+++..+.+ ..+-...++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELA-KSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTT-SSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC-CCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 356777777777753 237899999987654444 33232333 333332 566666543 57888888888999999
Q ss_pred ccchhHh-----------hcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEV-----------KRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKM 369 (429)
Q Consensus 325 ~S~~~E~-----------~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~l 369 (429)
..+.-+. ..|. .+.+.+| ..+.|.+.+++.++++.+.+
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L 281 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQK-TTFATLF------NKQQLEEEIAVHYQIAMDSL 281 (313)
T ss_dssp HHHHCC---------------C-CCHHHHS------CHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHhhCCCCcchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 8774332 1222 2444333 57888999999888886543
No 36
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=58.24 E-value=72 Score=30.10 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhC--CCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIA--NPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g--~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|... .+|.++|+..-..-+|..... .+..|.- -..+++..+. ..++-...++..-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~-~~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRA-AVRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777778777543 789999998876555543222 1222210 1134444433 357778888888999999
Q ss_pred ccchhHh-----------hcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEV-----------KRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 325 ~S~~~E~-----------~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
..+.-+. ..|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775432 22322 444443 3477888999999999877766
No 37
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=57.50 E-value=69 Score=30.73 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 247 ADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 247 ~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
..++.|-..+..|.. ...||.++|+..-..-+|..... .+..| ++ ..+++..+. ..++-...++..-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTa~L~~~-a~~~Ga~la-ga~~~~~~~---l~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINED-KEEISLKELDYMHLKKTGELIKA-SIMSGAVLA-EASEGDIKK---LEGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHH-HHHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHH-HHHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456778887877753 23689999998854433432221 11111 22 235555544 357778888888999999
Q ss_pred ccchhHh-hcC-----CC----CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 325 ATSSDEV-KRG-----DV----PKAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 325 ~S~~~E~-~~G-----~~----~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
..+.-+. .-| |. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764321 111 22 1344333 4689999999999999776654
No 38
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=57.27 E-value=64 Score=30.99 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
+...+.++...++.|-+.+..|.. ...||.++|+..-..-+|..... .+..| ++. .+++..+. ...+-...+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~-~~~~ga~lag-~~~~~~~~---l~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFAL-SCYQGAQLAG-APQSVIDR---TRDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHH-HHHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHH-HHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 456677788888988888887753 45689999998755544543222 12221 122 35555544 356777888
Q ss_pred HHHHHhcccccchh-----------HhhcCCCCchhhhhhhc
Q 014206 316 MIFRLANDLATSSD-----------EVKRGDVPKAIQCYMHE 346 (429)
Q Consensus 316 ~i~RL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e 346 (429)
...-+.||+..+.- +...|.. +...+|..+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 88889999876542 2344544 555555544
No 39
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=54.40 E-value=80 Score=30.64 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=57.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhh
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYS----------SGY-IPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFL 304 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~----------~~~-iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~ 304 (429)
+...+.++...++.|-..+..|.. .+. .||.++|+..-..-+|.....+. ..| ++ ..+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~la-g~~~~~~~~- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSV-SDDRGLAEA- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHH-CCCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHc-CCCHHHHHH-
Confidence 456778888899999999988862 233 67999999876665554432221 111 11 135555544
Q ss_pred hcchHHHHHHHHHHHHhcccccch
Q 014206 305 QEYPHIIRWPSMIFRLANDLATSS 328 (429)
Q Consensus 305 ~~~~~l~~~~~~i~RL~NDi~S~~ 328 (429)
...+....++..-+.||+..+-
T Consensus 210 --l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 --AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 3577788888889999987764
No 40
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=54.29 E-value=75 Score=30.25 Aligned_cols=111 Identities=11% Similarity=0.010 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhcccc
Q 014206 248 DMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDLA 325 (429)
Q Consensus 248 ~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~ 325 (429)
.++.|-..+..|. +..+|.++|...-..-+|...... +..| ++. .+++..+. ..++-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILGQ-APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566766676774 346899999987544444322211 1111 222 34444433 3567788888889999997
Q ss_pred cchhHh-hcC-----CCC----chhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 014206 326 TSSDEV-KRG-----DVP----KAIQCYMHETGASESDARLHIRDLITAAWMKMNN 371 (429)
Q Consensus 326 S~~~E~-~~G-----~~~----n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~ 371 (429)
.+.-+. ..| |.. +.+.+| ..+.|.+..+++++++...+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKNTYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSSSHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 764321 111 221 333322 4578888889989888766553
No 41
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=49.77 E-value=87 Score=29.92 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHHHHhccccchhh-HHHHH--HHHHhCCCccHHHHHhhhcchHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKW-YSSGYIPTLDEYIENAWVSVSGP-VILLH--AYSLIANPAKEEALQFLQEYPHIIRW 313 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W-~~~~~iPt~eEYl~~~~~S~g~~-~l~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~ 313 (429)
+...+.++...++.|-..+..| ......||.++|+..-..-+|.. ..... .-...|. +++.. ...+...
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 5567778889999999999999 64435689999998776655544 22211 1111222 22222 2467778
Q ss_pred HHHHHHHhcccccch
Q 014206 314 PSMIFRLANDLATSS 328 (429)
Q Consensus 314 ~~~i~RL~NDi~S~~ 328 (429)
.+...-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 888888999987764
No 42
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=49.07 E-value=84 Score=30.24 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHH-HHhCCCccHHHHHhhhcchHHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY-SLIANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~-~~~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
.+...+.++...++.|-..+..|.. ...+|+++|+..-..-+|......... ..++ ..+++..+. ..++-...+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLT-GQTAEVAVL---AFEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CcCHHHHHH---HHHHHHHHH
Confidence 3556777788888888888877643 235799999987555444332221111 1122 235555544 356778888
Q ss_pred HHHHHhcccccchh
Q 014206 316 MIFRLANDLATSSD 329 (429)
Q Consensus 316 ~i~RL~NDi~S~~~ 329 (429)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88899999987754
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=45.45 E-value=78 Score=30.13 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHH-HhhhcchHHHHHHHHHHHHhc
Q 014206 246 WADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEAL-QFLQEYPHIIRWPSMIFRLAN 322 (429)
Q Consensus 246 w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~-e~~~~~~~l~~~~~~i~RL~N 322 (429)
...++.|-..+..|. +..||+++|+..-..-+|...... +..| ++. .+++.. +. ...+....+...-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag-a~~~~~~~~---l~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG-IKDEELFKW---LQAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345677777777775 567899999987554444332211 1111 111 244443 44 3577888888889999
Q ss_pred ccccchhHh-hcCCCCchhhhhhhcCCC------CHHHHHHHHHHHHHHHHHHHH
Q 014206 323 DLATSSDEV-KRGDVPKAIQCYMHETGA------SESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 323 Di~S~~~E~-~~G~~~n~V~~yM~e~g~------s~eeA~~~i~~li~~~~k~ln 370 (429)
|+..+.-+. .-|..... ++... ..+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998875432 22332111 12222 457888888888888876654
No 44
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=44.41 E-value=64 Score=31.30 Aligned_cols=85 Identities=12% Similarity=0.015 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
+...+.++...++.|-..+..|.. +..||.++|+..-..-+|...... +..| ++ ..+++..+. ...+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~---l~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEH-RDRVSVEECLEMEGNKTGALLACA-SSIGAVLG-GADERTADT---LEKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 456777888899999999988864 347899999987766555443222 2221 12 235555544 357888888
Q ss_pred HHHHHhcccccch
Q 014206 316 MIFRLANDLATSS 328 (429)
Q Consensus 316 ~i~RL~NDi~S~~ 328 (429)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
No 45
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=41.77 E-value=1.4e+02 Score=28.09 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH-hCCCccHHHHHhhhcchHHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL-IANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~-~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
.....+.+.+..++.|-..+..|......||.++|+..-..-+|.........-+ ++. .++ ....+-...+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 4556678888999999999999986666899999998877655543222211111 121 121 2456778888
Q ss_pred HHHHHhcccccch
Q 014206 316 MIFRLANDLATSS 328 (429)
Q Consensus 316 ~i~RL~NDi~S~~ 328 (429)
+..-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8889999987764
No 46
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=38.55 E-value=35 Score=32.26 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhCC-CCCCHHHHHHhccc-cchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHHHhcccc
Q 014206 248 DMCKSFLLEAKWYSSG-YIPTLDEYIENAWV-SVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLA 325 (429)
Q Consensus 248 ~~~~~~~~Ea~W~~~~-~iPt~eEYl~~~~~-S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi~ 325 (429)
.++.|-..+..|...+ ..+|.++|+..-.. |.+...+.+.+-..++. .+++..+. ..++-...++..-+.||+.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag-~~~~~~~~---l~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG-GSDEEIER---LRKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566766666664321 24688999887443 44332111111111222 35555544 3577888888899999998
Q ss_pred cchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 014206 326 TSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMN 370 (429)
Q Consensus 326 S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln 370 (429)
.+..+. ..+...+| ..+.|.+.+.+.++++.+.+.
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 876443 23444444 567888888888887765543
No 47
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=37.63 E-value=81 Score=30.31 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHHhccccchhhHHHHHHHH-HhCCCccHHHHHhhhcchHHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSG--YIPTLDEYIENAWVSVSGPVILLHAYS-LIANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~--~iPt~eEYl~~~~~S~g~~~l~~~~~~-~~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
+...+.+....++.|-..+..|.... ..||.++|+..-..-+|....+....- .++. .++ .. .....+-...
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~-~~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSH-HG---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcH-HH---HHHHHHHHHH
Confidence 45567777888999999999998655 578999999887765554322221111 1111 222 12 2346788889
Q ss_pred HHHHHHhcccccchh
Q 014206 315 SMIFRLANDLATSSD 329 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~ 329 (429)
++..-+.||+..+.-
T Consensus 207 G~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987753
No 48
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=34.94 E-value=1.1e+02 Score=28.97 Aligned_cols=88 Identities=8% Similarity=0.057 Sum_probs=58.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH-hCCCccHHHHHhhhcchHHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL-IANPAKEEALQFLQEYPHIIRWPS 315 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~-~g~~l~~e~~e~~~~~~~l~~~~~ 315 (429)
.+...+.++...++.|-..+..|.. +..||.++|+..-..-+|.....+...-+ ++ ..+++..+. ..++-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSS-QLDEQSTYH---IKQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 3556777788889999999988864 33689999998877655544322211111 12 235555544 357788888
Q ss_pred HHHHHhcccccchh
Q 014206 316 MIFRLANDLATSSD 329 (429)
Q Consensus 316 ~i~RL~NDi~S~~~ 329 (429)
...-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88899999987643
No 49
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=33.66 E-value=66 Score=29.98 Aligned_cols=70 Identities=13% Similarity=-0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHhccc
Q 014206 248 DMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLANDL 324 (429)
Q Consensus 248 ~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDi 324 (429)
.++.|-..+..|... .||+++|+..-..-+|...... +..| ++. .+++..+. ..++-...++..-+.||+
T Consensus 150 ~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGailag-a~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 150 GMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGAILGG-AAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp THHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 356666666666433 7899999976544444332221 1111 222 35555544 357888888888999996
No 50
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=32.12 E-value=1.7e+02 Score=27.44 Aligned_cols=117 Identities=10% Similarity=0.104 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHH-HHhCCCccHHHHHhhhcchHHHHHHHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY-SLIANPAKEEALQFLQEYPHIIRWPSM 316 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~-~~~g~~l~~e~~e~~~~~~~l~~~~~~ 316 (429)
+...+.++...++.|-..+..| .++|++.-..-+|......... ..++ .+++..+. ..++-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~---l~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQ---MLDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHH---HHHHHHHHHH
Confidence 4556677777777777666543 6788877665455432221111 1133 45554444 3567788888
Q ss_pred HHHHhcccccchhHh----hcCCCCchhhhhhhcCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 014206 317 IFRLANDLATSSDEV----KRGDVPKAIQCYMHETGASESDA-RLHIRDLITAAWMKMNN 371 (429)
Q Consensus 317 i~RL~NDi~S~~~E~----~~G~~~n~V~~yM~e~g~s~eeA-~~~i~~li~~~~k~ln~ 371 (429)
..-+.||+..+.-+. ..| ..+...+| . ..+.++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~g-k~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGS-AKQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTT-GGGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcC-cccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999987764321 122 13555556 3 2345777 45677777777655543
No 51
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=30.30 E-value=42 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 014206 347 TGASESDARLHIRDLITAAWMKM 369 (429)
Q Consensus 347 ~g~s~eeA~~~i~~li~~~~k~l 369 (429)
||++.+||+..+...+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999887644
No 52
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=30.29 E-value=1.5e+02 Score=28.57 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCCHHHHHHhccccchhh-HHH--HHHHHHhCCCccHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWY-----------SSGY----IPTLDEYIENAWVSVSGP-VIL--LHAYSLIANPAKEE 299 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~-----------~~~~----iPt~eEYl~~~~~S~g~~-~l~--~~~~~~~g~~l~~e 299 (429)
+...+.+....++.|-..+..|. ..+. .+|.++|+..-..-+|.. ... ...-. ++...+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~-lag~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLF-VSEAAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHH-HcCCCCHH
Confidence 55677778888999999998887 3223 489999998877655544 221 11112 22212444
Q ss_pred HHHhhhcchHHHHHHHHHHHHhcccccchh
Q 014206 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSD 329 (429)
Q Consensus 300 ~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~ 329 (429)
..+. ...+....++..-+.||+..+.-
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~ 257 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFT 257 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence 3433 35777888888899999987753
No 53
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=27.85 E-value=27 Score=19.80 Aligned_cols=11 Identities=27% Similarity=0.592 Sum_probs=8.8
Q ss_pred hHHHHhHHHhc
Q 014206 84 LEARWFIDVYE 94 (429)
Q Consensus 84 ~ear~yi~~Y~ 94 (429)
+|||.|+++..
T Consensus 7 iearkyleqlh 17 (26)
T 1xkm_B 7 IEARKYLEQLH 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999998753
No 54
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=26.23 E-value=29 Score=26.58 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=23.9
Q ss_pred hHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHH
Q 014206 15 IKGILALYEAAYLLGEEESTIFHEAINFTTTHLEE 49 (429)
Q Consensus 15 v~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~ 49 (429)
=+.||.-| +...+| ..|-.|-.||+.-+++
T Consensus 11 Y~~iL~~y----l~~~~E-~~Ly~~q~fs~~~iek 40 (84)
T 1w53_A 11 YHQLLSRY----IAELTE-TSLYQAQKFSRKTIEH 40 (84)
T ss_dssp HHHHHHHH----HHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HHcccH-HHHHHHHHhhHHHHHc
Confidence 35677777 556688 9999999999998765
No 55
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=25.49 E-value=29 Score=27.95 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=24.1
Q ss_pred hHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHH
Q 014206 15 IKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEY 50 (429)
Q Consensus 15 v~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~ 50 (429)
=+.||.-| +...+| .+|-+|-.||+.-+++.
T Consensus 11 Y~~iL~~y----l~~~~E-~~Ly~aq~fsr~liek~ 41 (111)
T 2j6y_A 11 YHQLLSRY----IAELTK-TSLYQAQKFSRKTIEHQ 41 (111)
T ss_dssp HHHHHHHH----HHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH----HHcccH-HHHHHHHHHHHHHHHcC
Confidence 35677777 445579 99999999999998753
No 56
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=24.16 E-value=1.9e+02 Score=28.12 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHHHHhccccchhh-HHH--HHHHHHhCCCccHHHHHhhhcchHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGY----IPTLDEYIENAWVSVSGP-VIL--LHAYSLIANPAKEEALQFLQEYPHI 310 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~----iPt~eEYl~~~~~S~g~~-~l~--~~~~~~~g~~l~~e~~e~~~~~~~l 310 (429)
+...+.+.....+.|-..+..|...+. .+|+++|+..-..-+|.. ... ...-. ++...+++..+. ...+
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~-lag~a~~~~~~~---l~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMY-MAGIDGEKEHAN---AKKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTCCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHH-HcCCCcHHHHHH---HHHH
Confidence 456777888888999999988875444 379999998877655544 211 11112 233235555544 3578
Q ss_pred HHHHHHHHHHhcccccchh
Q 014206 311 IRWPSMIFRLANDLATSSD 329 (429)
Q Consensus 311 ~~~~~~i~RL~NDi~S~~~ 329 (429)
....++..-+.||+..+.-
T Consensus 253 g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 8888999999999987643
No 57
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=24.04 E-value=1.2e+02 Score=28.54 Aligned_cols=84 Identities=12% Similarity=-0.012 Sum_probs=55.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHH--HHHHhCCCccHHHHHhhhcchHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLH--AYSLIANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
.+...+.++...++.|-..+..|.... ||.++|+..-..-+|....... .-...|. ++ +. ...+-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~---~~---l~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LG---ED---LYNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CC---HH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CH---HH---HHHHHHHH
Confidence 356677888899999999999997544 9999999887765554322211 1111232 22 22 34677778
Q ss_pred HHHHHHhcccccchhH
Q 014206 315 SMIFRLANDLATSSDE 330 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~E 330 (429)
++..-+.||+..+.-+
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 8888899998877544
No 58
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=23.87 E-value=38 Score=26.84 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=19.9
Q ss_pred chhhhhhhcCCCCHHHHHHHHHH
Q 014206 338 KAIQCYMHETGASESDARLHIRD 360 (429)
Q Consensus 338 n~V~~yM~e~g~s~eeA~~~i~~ 360 (429)
.-|.+.|.|.|+|.++|++.+.+
T Consensus 67 edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 67 DDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 55889999999999999988764
No 59
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=22.53 E-value=1.7e+02 Score=28.43 Aligned_cols=88 Identities=8% Similarity=-0.041 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHHHHhccccchhh-HH--HHHHHHHhCCCccHHHHHhhhcchHH
Q 014206 238 VVPYLKKAWADMCKSFLLEAKWYSSGY----IPTLDEYIENAWVSVSGP-VI--LLHAYSLIANPAKEEALQFLQEYPHI 310 (429)
Q Consensus 238 ~~~~~~~~w~~~~~~~~~Ea~W~~~~~----iPt~eEYl~~~~~S~g~~-~l--~~~~~~~~g~~l~~e~~e~~~~~~~l 310 (429)
+...+.+.....+.|-..+..|...+. .+|+++|+..-..-+|.. .. +...-...| ..+++..+. ...+
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~---l~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHEN---AKAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHH---HHHH
Confidence 456777788888999999998875443 579999998877655543 11 111112223 135555544 3577
Q ss_pred HHHHHHHHHHhcccccchh
Q 014206 311 IRWPSMIFRLANDLATSSD 329 (429)
Q Consensus 311 ~~~~~~i~RL~NDi~S~~~ 329 (429)
....++..-+.||+..+.-
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8888899999999987653
No 60
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=20.39 E-value=2.8e+02 Score=26.14 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=54.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHH--HHHHhCCCccHHHHHhhhcchHHHHHH
Q 014206 237 HVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLH--AYSLIANPAKEEALQFLQEYPHIIRWP 314 (429)
Q Consensus 237 ~~~~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~~ 314 (429)
.+...+.++...++.|-..+..|.. +..||.++|+..-..-+|....... .-...|.. .+ ....+....
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~-----~~---~l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD-----AK---IYADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC-----HH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC-----HH---HHHHHHHHH
Confidence 3456777888889999999998864 4568999999876655554322211 11112222 21 235677888
Q ss_pred HHHHHHhcccccchh
Q 014206 315 SMIFRLANDLATSSD 329 (429)
Q Consensus 315 ~~i~RL~NDi~S~~~ 329 (429)
++..-+.||+..+--
T Consensus 193 G~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 193 GMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcccC
Confidence 888899999987743
No 61
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=20.18 E-value=2.8e+02 Score=27.01 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHH--hCCCccHHHHHhhhcchHHHHHHHHHHHHh
Q 014206 244 KAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSL--IANPAKEEALQFLQEYPHIIRWPSMIFRLA 321 (429)
Q Consensus 244 ~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ 321 (429)
....+++.|-..+..|... ..||+++|+..-..-+|...+...+..| ++ ..+++..+. ...+-...++..-+.
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~-~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~la-ga~~~~~~~---l~~~G~~lG~AFQI~ 256 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESH-ANESVELADSVNRFKTAAYTIARPLHLGASIA-GGSPQLIDA---LLHYGHDIGIAFQLR 256 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhhchHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 3335677888888888754 3679999998766555543111111111 11 235555544 357888888999999
Q ss_pred cccccch
Q 014206 322 NDLATSS 328 (429)
Q Consensus 322 NDi~S~~ 328 (429)
||+..+-
T Consensus 257 DDiLd~~ 263 (380)
T 3lk5_A 257 DDLLGVF 263 (380)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998764
Done!