Query 014207
Match_columns 429
No_of_seqs 248 out of 1352
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i2j_A Signaling peptide UA159 11.5 1.4E+02 0.0047 17.3 1.8 19 271-289 2-20 (26)
2 4hfv_A Uncharacterized protein 7.1 3E+02 0.01 24.4 3.2 45 247-301 102-146 (190)
3 1lbj_A Motilin; A-helix, B-tur 5.0 2.9E+02 0.0098 16.3 1.2 10 163-172 3-12 (26)
4 3dvk_B Voltage-dependent R-typ 4.0 1.7E+02 0.0058 17.0 -0.3 14 268-281 7-20 (23)
5 2dw3_A Intrinsic membrane prot 3.8 1.3E+03 0.045 17.2 5.6 24 16-39 32-55 (77)
6 3dve_B Voltage-dependent N-typ 3.2 4.2E+02 0.014 15.3 0.8 9 272-280 10-18 (23)
7 2dpr_A CON-T(K7GLA); conantoxi 3.1 5.8E+02 0.02 14.6 1.4 13 416-428 6-19 (26)
8 3si5_X Protein CASC5; BUBR1-bl 2.9 5.7E+02 0.02 14.7 1.2 11 165-175 11-21 (24)
9 3sjd_D Golgi to ER traffic pro 2.9 3.2E+02 0.011 18.4 0.2 9 420-428 13-21 (46)
10 1hx1_B BAG-1, BAG-family molec 2.9 3.3E+02 0.011 22.1 0.3 15 252-266 70-84 (114)
No 1
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=11.50 E-value=1.4e+02 Score=17.26 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=14.8
Q ss_pred CchHHHHhhhhhhHHHHhh
Q 014207 271 HNLETFWKNWHASFNKWLV 289 (429)
Q Consensus 271 ~s~~~FWr~wh~sl~~wlr 289 (429)
-|++.|.|-+|+|+.+=+-
T Consensus 2 gslstffrlfnrsftqalg 20 (26)
T 2i2j_A 2 GSLSTFFRLFNRSFTQALG 20 (26)
T ss_pred ccHHHHHHHHhHHHHHHhc
Confidence 4788899999999876543
No 2
>4hfv_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, effector, unknown function; HET: CIT; 1.90A {Legionella pneumophila subsp}
Probab=7.14 E-value=3e+02 Score=24.44 Aligned_cols=45 Identities=16% Similarity=0.395 Sum_probs=30.2
Q ss_pred HHHHhHhhcccccCCCCCccccccCchHHHHhhhhhhHHHHhhcceeeecccCcc
Q 014207 247 YFRLWSLICGIEAPENMPRCVNNCHNLETFWKNWHASFNKWLVRYMYIPLGGSQK 301 (429)
Q Consensus 247 ~~~~~a~l~Gi~~P~Nf~~~~~~a~s~~~FWr~wh~sl~~wlr~YvY~Pl~g~~~ 301 (429)
+..+.+...|++- +|.|-. +.+ -..+..++.++|.+||.| ..+|+
T Consensus 102 l~~~L~~~l~i~~-en~Pd~----~Dl----~~~~~Aln~Fmr~~i~~~-~d~rk 146 (190)
T 4hfv_A 102 FYKSLTISLDLNK-DNNPNR----EDL----ADMYSALEKFLRSHVYKN-SDPRK 146 (190)
T ss_dssp HHHHHHHHTTCBT-TBCCCH----HHH----HHHHHHHHHHHHHTTBGG-GCGGG
T ss_pred HHHHHHhhcCCcc-ccCCCH----HHH----HHHHHHHHHHHHHHHhcC-Ccccc
Confidence 3444577788884 666532 222 346889999999999999 34443
No 3
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=4.97 E-value=2.9e+02 Score=16.26 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.3
Q ss_pred ccccHHHHHH
Q 014207 163 PIISFNAFAS 172 (429)
Q Consensus 163 PI~~y~df~~ 172 (429)
||.+|.|..+
T Consensus 3 PiFt~selqr 12 (26)
T 1lbj_A 3 PIFTYGELQR 12 (26)
T ss_dssp CTTCHHHHHH
T ss_pred ceeeHHHHHH
Confidence 8999999853
No 4
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=3.95 E-value=1.7e+02 Score=16.96 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=8.8
Q ss_pred cccCchHHHHhhhh
Q 014207 268 NNCHNLETFWKNWH 281 (429)
Q Consensus 268 ~~a~s~~~FWr~wh 281 (429)
|.+.-++|+||++-
T Consensus 7 YA~llI~d~~r~~k 20 (23)
T 3dvk_B 7 YAAMMIMDYYKQSK 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34455778887763
No 5
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=3.78 E-value=1.3e+03 Score=17.19 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 014207 16 LHGACVIFILSIASLNFLLVKSFA 39 (429)
Q Consensus 16 ~~g~~~l~~l~~~l~nY~~~~~l~ 39 (429)
+-...++..+..+.+.|.+++.++
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LP 55 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLP 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 334444444555556666666654
No 6
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=3.15 E-value=4.2e+02 Score=15.30 Aligned_cols=9 Identities=22% Similarity=0.302 Sum_probs=5.1
Q ss_pred chHHHHhhh
Q 014207 272 NLETFWKNW 280 (429)
Q Consensus 272 s~~~FWr~w 280 (429)
-+.|+||++
T Consensus 10 lI~d~~r~~ 18 (23)
T 3dve_B 10 MIFDFYKQN 18 (26)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 356666654
No 7
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=3.10 E-value=5.8e+02 Score=14.61 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=6.8
Q ss_pred HHHHH-Hhhhhhhc
Q 014207 416 KLMFQ-ISDAKQRK 428 (429)
Q Consensus 416 ~~~~~-~~~~~~~~ 428 (429)
|-|.| .||+|.++
T Consensus 6 qemlenlreaevkk 19 (26)
T 2dpr_A 6 QEMLENLREAEVKK 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444 56666543
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=2.89 E-value=5.7e+02 Score=14.71 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=6.8
Q ss_pred ccHHHHHHHhc
Q 014207 165 ISFNAFASQLE 175 (429)
Q Consensus 165 ~~y~df~~q~~ 175 (429)
+.++||++.++
T Consensus 11 infndFIKRLK 21 (24)
T 3si5_X 11 IDFNDFIKRLK 21 (26)
T ss_pred ccHHHHHHHHh
Confidence 35667776655
No 9
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=2.88 E-value=3.2e+02 Score=18.38 Aligned_cols=9 Identities=22% Similarity=0.785 Sum_probs=4.0
Q ss_pred HHhhhhhhc
Q 014207 420 QISDAKQRK 428 (429)
Q Consensus 420 ~~~~~~~~~ 428 (429)
|++++||++
T Consensus 13 ~lsa~EkaR 21 (46)
T 3sjd_D 13 ELTEAEKRR 21 (46)
T ss_dssp --CHHHHHH
T ss_pred cccHHHHHH
Confidence 556666553
No 10
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=2.87 E-value=3.3e+02 Score=22.07 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.7
Q ss_pred HhhcccccCCCCCcc
Q 014207 252 SLICGIEAPENMPRC 266 (429)
Q Consensus 252 a~l~Gi~~P~Nf~~~ 266 (429)
=.+|++.+||||..|
T Consensus 70 E~lDsl~i~e~~~~~ 84 (114)
T 1hx1_B 70 EEIDTLILPENFKDS 84 (114)
T ss_dssp HHHTTCCCCTTCHHH
T ss_pred HHhhcccCChhHHHH
Confidence 579999999999654
Done!