Query 014207
Match_columns 429
No_of_seqs 248 out of 1352
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74f1 f.23.25.1 (F:1-32) Pet 23.1 43 0.0031 19.0 3.2 20 5-24 10-29 (32)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 19.4 68 0.005 19.2 3.7 21 407-429 12-32 (37)
3 d1nekd_ f.21.2.2 (D:) Succinat 11.5 2.4E+02 0.018 20.4 6.2 13 356-368 14-26 (113)
4 d2bs2c1 f.21.2.1 (C:1-254) Fum 11.2 4.1E+02 0.03 22.1 8.7 38 355-393 23-63 (254)
5 d1q90n_ f.23.27.1 (N:) PetN su 4.7 2.9E+02 0.021 15.3 2.6 17 304-327 11-27 (31)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 4.3 4E+02 0.029 18.5 4.1 20 409-428 82-101 (103)
7 d1hx1b_ a.7.7.1 (B:) BAG-famil 3.4 1.3E+02 0.0094 22.5 0.3 17 250-266 68-84 (112)
8 d1rmka_ g.3.6.1 (A:) Conotoxin 3.2 1.2E+02 0.0089 16.8 0.0 16 150-165 14-29 (31)
9 d1zk8a2 a.121.1.1 (A:78-182) T 3.2 2.6E+02 0.019 19.3 2.1 14 322-335 64-77 (105)
10 d2hjja1 d.50.3.3 (A:10-75) Hyp 3.0 88 0.0064 21.1 -0.9 19 274-292 38-58 (66)
No 1
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.08 E-value=43 Score=19.02 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q 014207 5 WLFISFIYLFYLHGACVIFI 24 (429)
Q Consensus 5 ~l~~sl~F~~~~~g~~~l~~ 24 (429)
.+-++++|..|..|.-++++
T Consensus 10 ~lsfglifvgwglgalllki 29 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHhhh
Confidence 35588888888887765543
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=19.40 E-value=68 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC
Q 014207 407 MFLTFYVGTKLMFQISDAKQRKQ 429 (429)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
++-.+|.|. ++..|.+.+|+|
T Consensus 12 ~Fw~FFagL--i~YL~rE~~REG 32 (37)
T d1eysh2 12 AFWLFFFGL--IIYLRREDKREG 32 (37)
T ss_dssp HHHHHHHHH--HHHHHHHTTSSS
T ss_pred HHHHHHHHH--HHHHHhcccccC
Confidence 444555554 778888888886
No 3
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=11.47 E-value=2.4e+02 Score=20.36 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=7.0
Q ss_pred hhHHHHHHHHhHH
Q 014207 356 FLVRELRAFAGSI 368 (429)
Q Consensus 356 ~~~r~~~a~~~~~ 368 (429)
++..|+-|+.-.+
T Consensus 14 W~~qRvSAv~l~~ 26 (113)
T d1nekd_ 14 FILVRATAIVLTL 26 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455566665444
No 4
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=11.18 E-value=4.1e+02 Score=22.11 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=24.6
Q ss_pred chhHHHHHHHHhHHHHHH---HHHHHHhhhhcCcchHHHHHH
Q 014207 355 GFLVRELRAFAGSITITC---LMIANLVGYVIGPSGVNWLMS 393 (429)
Q Consensus 355 ~~~~r~~~a~~~~~~~~~---~~~~nl~gf~~g~~~~~~~~~ 393 (429)
+.+.|++.++.|.+-..+ =|+.|+.. ..|+|..+...+
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~i-l~g~eafn~~a~ 63 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTI-LLGDNVMLWVTK 63 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHH
Confidence 346788888877763333 24456544 668888888765
No 5
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.68 E-value=2.9e+02 Score=15.27 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHhhcchhhHHHHH
Q 014207 304 YNIWAIFTFVAVWHDLEWKLLSWA 327 (429)
Q Consensus 304 ~~~~~~f~~~~lWHg~~~~~~~wg 327 (429)
.+++++|.|+ ..+++||
T Consensus 11 aa~~atfsfs-------lslvvwg 27 (31)
T d1q90n_ 11 AATCVMFSFS-------LSLVVWG 27 (31)
T ss_dssp HHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHhheee-------EEEEEEe
Confidence 4566666643 4556665
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.35 E-value=4e+02 Score=18.49 Aligned_cols=20 Identities=5% Similarity=0.232 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 014207 409 LTFYVGTKLMFQISDAKQRK 428 (429)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ 428 (429)
+....+.-.-.-.++++|||
T Consensus 82 ~~~~~~~i~~~~~~~~~~rr 101 (103)
T d1r3jc_ 82 FGLVTAALATWFVGREQERR 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33344433333333334444
No 7
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.37 E-value=1.3e+02 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.5
Q ss_pred HhHhhcccccCCCCCcc
Q 014207 250 LWSLICGIEAPENMPRC 266 (429)
Q Consensus 250 ~~a~l~Gi~~P~Nf~~~ 266 (429)
..=.+|++.+|+||.+|
T Consensus 68 ~LE~LDsl~lp~~~~~~ 84 (112)
T d1hx1b_ 68 ILEEIDTLILPENFKDS 84 (112)
T ss_dssp HHHHHTTCCCCTTCHHH
T ss_pred HHHHhhhccCcHHHHHH
Confidence 34679999999998554
No 8
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=3.21 E-value=1.2e+02 Score=16.80 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=11.1
Q ss_pred HHHHHhhhhhhhcccc
Q 014207 150 LCYLVYAPLYISGPII 165 (429)
Q Consensus 150 l~Y~~yfP~~~aGPI~ 165 (429)
+.|+.--|.++.||.+
T Consensus 14 ~gfiyccpglicgpfv 29 (31)
T d1rmka_ 14 LGFVYCCPGLICGPFV 29 (31)
T ss_dssp TCCCEESTTCCBCSSS
T ss_pred eeeeeeCCCcccccee
Confidence 4455567888888865
No 9
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=3.21 E-value=2.6e+02 Score=19.34 Aligned_cols=14 Identities=7% Similarity=-0.341 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHH
Q 014207 322 KLLSWAWLTCLFFI 335 (429)
Q Consensus 322 ~~~~wg~l~~~~~~ 335 (429)
...+|+.+||+..+
T Consensus 64 a~~lWa~vHG~~~L 77 (105)
T d1zk8a2 64 TRGFRSICHGFASI 77 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 45689999998644
No 10
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=3.01 E-value=88 Score=21.11 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=10.1
Q ss_pred HHHHhhhhh--hHHHHhhcce
Q 014207 274 ETFWKNWHA--SFNKWLVRYM 292 (429)
Q Consensus 274 ~~FWr~wh~--sl~~wlr~Yv 292 (429)
+--||.||- .-..||.+||
T Consensus 38 ~mvWR~wNfEp~Ag~~lNryi 58 (66)
T d2hjja1 38 RMVWRAWNFEPDAGEGLNRYI 58 (66)
T ss_dssp CEEEEEESSSTTHHHHHHHHH
T ss_pred cEEEEEeccCCCHHHHHHHHH
Confidence 445777763 3344554443
Done!