Query 014212
Match_columns 429
No_of_seqs 455 out of 4452
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 2.2E-77 4.7E-82 507.5 15.2 246 178-429 3-265 (303)
2 KOG0373 Serine/threonine speci 100.0 5.5E-71 1.2E-75 460.7 13.6 246 177-428 5-268 (306)
3 KOG0376 Serine-threonine phosp 100.0 4.2E-68 9E-73 496.8 21.9 417 13-429 3-437 (476)
4 cd07417 MPP_PP5_C PP5, C-termi 100.0 5.7E-67 1.2E-71 486.4 25.3 266 164-429 2-283 (316)
5 cd07420 MPP_RdgC Drosophila me 100.0 7E-67 1.5E-71 483.9 24.6 255 173-429 2-303 (321)
6 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 6.4E-64 1.4E-68 460.6 22.8 246 178-429 2-264 (285)
7 PTZ00480 serine/threonine-prot 100.0 7.8E-64 1.7E-68 462.6 22.9 234 190-429 31-281 (320)
8 KOG0374 Serine/threonine speci 100.0 2E-64 4.4E-69 467.9 18.3 232 191-428 32-282 (331)
9 PTZ00239 serine/threonine prot 100.0 2.5E-63 5.5E-68 458.7 22.9 246 178-429 3-266 (303)
10 KOG0375 Serine-threonine phosp 100.0 1.9E-64 4.1E-69 449.8 13.2 247 177-429 47-323 (517)
11 PTZ00244 serine/threonine-prot 100.0 1.5E-62 3.2E-67 452.3 21.5 234 190-429 24-274 (294)
12 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.6E-62 3.5E-67 453.0 21.6 234 190-429 22-272 (293)
13 cd07416 MPP_PP2B PP2B, metallo 100.0 5E-62 1.1E-66 452.9 23.8 246 178-429 3-278 (305)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 2.3E-61 5E-66 452.8 25.1 257 173-429 7-344 (377)
15 KOG0371 Serine/threonine prote 100.0 8.9E-63 1.9E-67 421.2 11.5 247 176-428 18-281 (319)
16 smart00156 PP2Ac Protein phosp 100.0 3.6E-61 7.8E-66 441.5 22.0 232 192-429 2-250 (271)
17 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.9E-58 4.1E-63 431.2 22.8 235 190-429 20-292 (311)
18 KOG0377 Protein serine/threoni 100.0 1.4E-58 3.1E-63 421.9 12.5 272 155-429 99-412 (631)
19 cd00144 MPP_PPP_family phospho 100.0 5.4E-32 1.2E-36 245.4 16.3 195 225-428 1-218 (225)
20 PRK13625 bis(5'-nucleosyl)-tet 99.9 2.8E-25 6E-30 202.4 13.4 121 223-346 2-145 (245)
21 cd07413 MPP_PA3087 Pseudomonas 99.9 1.4E-23 3.1E-28 188.2 13.2 116 224-342 1-142 (222)
22 cd07425 MPP_Shelphs Shewanella 99.9 7.8E-24 1.7E-28 187.8 11.0 166 225-418 1-195 (208)
23 cd07423 MPP_PrpE Bacillus subt 99.9 5.9E-23 1.3E-27 186.3 15.1 118 223-343 2-140 (234)
24 cd07422 MPP_ApaH Escherichia c 99.9 5.4E-24 1.2E-28 193.0 7.9 118 224-346 1-124 (257)
25 PRK11439 pphA serine/threonine 99.9 6.3E-23 1.4E-27 183.9 14.2 170 215-405 10-194 (218)
26 TIGR00668 apaH bis(5'-nucleosy 99.9 2.6E-23 5.7E-28 188.1 9.9 119 223-346 2-126 (279)
27 PHA02239 putative protein phos 99.9 2.6E-22 5.6E-27 180.5 13.8 158 223-405 2-205 (235)
28 cd07424 MPP_PrpA_PrpB PrpA and 99.9 2.6E-22 5.7E-27 178.8 12.7 169 223-406 2-184 (207)
29 cd07421 MPP_Rhilphs Rhilph pho 99.9 2.9E-22 6.3E-27 181.0 12.4 76 223-298 3-84 (304)
30 PRK00166 apaH diadenosine tetr 99.9 2.7E-22 5.9E-27 183.9 8.5 119 223-346 2-126 (275)
31 PRK09968 serine/threonine-spec 99.8 1.2E-20 2.6E-25 168.8 14.0 169 215-402 8-191 (218)
32 KOG4626 O-linked N-acetylgluco 99.8 4.5E-19 9.8E-24 170.4 7.5 174 6-193 244-419 (966)
33 KOG0553 TPR repeat-containing 99.7 1.8E-17 4E-22 148.0 13.8 123 9-131 76-198 (304)
34 KOG4626 O-linked N-acetylgluco 99.7 1.9E-17 4.1E-22 159.4 8.5 149 7-169 279-427 (966)
35 PRK15359 type III secretion sy 99.7 8.7E-16 1.9E-20 128.5 16.6 115 16-130 26-140 (144)
36 KOG1126 DNA-binding cell divis 99.6 3.6E-16 7.7E-21 152.5 6.0 151 6-170 413-563 (638)
37 PRK15363 pathogenicity island 99.6 8.1E-14 1.7E-18 114.9 16.9 111 8-118 28-139 (157)
38 COG3063 PilF Tfp pilus assembl 99.6 5.9E-14 1.3E-18 120.9 15.4 148 9-170 30-179 (250)
39 TIGR02552 LcrH_SycD type III s 99.6 1.3E-13 2.9E-18 114.2 16.7 120 7-126 10-129 (135)
40 TIGR00990 3a0801s09 mitochondr 99.6 5.2E-14 1.1E-18 146.3 16.9 154 10-165 327-502 (615)
41 TIGR00990 3a0801s09 mitochondr 99.6 1.9E-14 4.1E-19 149.6 12.0 132 9-142 286-423 (615)
42 PLN03088 SGT1, suppressor of 99.5 2E-13 4.3E-18 131.6 17.1 116 16-131 4-119 (356)
43 PRK11189 lipoprotein NlpI; Pro 99.5 4.7E-13 1E-17 126.1 16.1 108 10-117 60-167 (296)
44 PRK15359 type III secretion sy 99.5 6.8E-14 1.5E-18 117.1 8.5 117 34-167 13-129 (144)
45 KOG1155 Anaphase-promoting com 99.5 1.8E-13 3.8E-18 128.4 11.9 126 15-142 331-456 (559)
46 PRK10370 formate-dependent nit 99.5 9.1E-13 2E-17 116.2 15.2 109 9-117 68-179 (198)
47 KOG1155 Anaphase-promoting com 99.5 5.9E-13 1.3E-17 125.0 13.9 133 8-142 358-490 (559)
48 PRK10370 formate-dependent nit 99.5 5E-13 1.1E-17 117.9 12.8 122 27-162 52-176 (198)
49 KOG0548 Molecular co-chaperone 99.5 8.3E-13 1.8E-17 126.3 14.2 122 8-129 352-473 (539)
50 COG3063 PilF Tfp pilus assembl 99.5 6.4E-13 1.4E-17 114.6 11.8 134 7-142 62-197 (250)
51 PRK09782 bacteriophage N4 rece 99.5 1E-12 2.3E-17 140.4 15.9 168 11-193 573-742 (987)
52 KOG0547 Translocase of outer m 99.4 1.9E-13 4.2E-18 128.9 8.5 179 10-190 356-565 (606)
53 PRK12370 invasion protein regu 99.4 1.1E-12 2.4E-17 134.2 15.0 133 8-142 332-465 (553)
54 KOG0547 Translocase of outer m 99.4 2.2E-12 4.7E-17 121.9 14.5 153 11-163 323-495 (606)
55 PRK12370 invasion protein regu 99.4 1.7E-12 3.7E-17 132.9 14.9 134 7-142 288-430 (553)
56 KOG1126 DNA-binding cell divis 99.4 1.3E-12 2.8E-17 127.9 12.4 134 7-142 482-615 (638)
57 KOG0624 dsRNA-activated protei 99.4 7.5E-13 1.6E-17 119.9 9.4 157 7-165 31-190 (504)
58 TIGR02521 type_IV_pilW type IV 99.4 7.4E-12 1.6E-16 112.8 15.8 134 7-142 24-159 (234)
59 PRK15179 Vi polysaccharide bio 99.4 3.6E-12 7.8E-17 131.5 14.7 132 9-142 81-212 (694)
60 PRK15174 Vi polysaccharide exp 99.4 3.8E-12 8.3E-17 132.6 14.4 121 11-131 243-367 (656)
61 TIGR02521 type_IV_pilW type IV 99.4 9.6E-12 2.1E-16 112.0 15.1 132 9-142 60-193 (234)
62 PRK15174 Vi polysaccharide exp 99.4 3.7E-12 7.9E-17 132.7 13.4 124 17-142 215-342 (656)
63 TIGR03302 OM_YfiO outer membra 99.4 8.2E-12 1.8E-16 113.8 13.8 155 8-162 27-198 (235)
64 PRK09782 bacteriophage N4 rece 99.4 1.1E-11 2.3E-16 132.8 15.8 132 9-143 605-736 (987)
65 PF13429 TPR_15: Tetratricopep 99.4 4.8E-12 1E-16 118.6 11.7 131 10-142 142-272 (280)
66 KOG0543 FKBP-type peptidyl-pro 99.4 2.8E-11 6.1E-16 113.0 16.3 123 10-132 204-341 (397)
67 TIGR02552 LcrH_SycD type III s 99.4 5.8E-12 1.3E-16 104.3 10.5 115 35-163 4-118 (135)
68 TIGR02795 tol_pal_ybgF tol-pal 99.3 4.3E-11 9.4E-16 96.4 14.7 107 14-120 2-114 (119)
69 COG5010 TadD Flp pilus assembl 99.3 3.3E-11 7.2E-16 106.2 14.8 134 7-142 93-226 (257)
70 KOG1125 TPR repeat-containing 99.3 4.1E-12 8.8E-17 122.6 8.7 120 12-131 428-557 (579)
71 KOG4234 TPR repeat-containing 99.3 3.5E-11 7.5E-16 101.4 13.1 117 10-126 91-212 (271)
72 KOG1125 TPR repeat-containing 99.3 2E-11 4.4E-16 117.9 12.4 166 6-185 311-521 (579)
73 PRK11447 cellulose synthase su 99.3 8.5E-12 1.8E-16 138.4 10.5 156 8-166 297-497 (1157)
74 PLN02789 farnesyltranstransfer 99.3 5.9E-11 1.3E-15 112.0 14.5 154 8-168 65-221 (320)
75 PRK02603 photosystem I assembl 99.3 1.2E-10 2.6E-15 100.8 15.2 111 5-115 26-153 (172)
76 PRK11189 lipoprotein NlpI; Pro 99.3 3.5E-11 7.6E-16 113.4 12.5 123 27-163 39-165 (296)
77 PRK15331 chaperone protein Sic 99.3 1.9E-10 4.2E-15 95.3 15.0 115 6-121 29-143 (165)
78 KOG2076 RNA polymerase III tra 99.3 2.2E-10 4.8E-15 115.8 18.4 130 11-142 136-265 (895)
79 cd00189 TPR Tetratricopeptide 99.3 9.3E-11 2E-15 89.2 12.5 99 16-114 2-100 (100)
80 PF13414 TPR_11: TPR repeat; P 99.3 2.9E-11 6.3E-16 87.5 8.5 66 48-113 3-69 (69)
81 TIGR03302 OM_YfiO outer membra 99.3 1.3E-10 2.8E-15 105.9 14.6 131 10-142 66-227 (235)
82 PF13414 TPR_11: TPR repeat; P 99.3 2.7E-11 5.9E-16 87.7 7.9 67 13-79 2-69 (69)
83 PRK15363 pathogenicity island 99.2 5.4E-11 1.2E-15 98.2 9.7 103 38-142 24-127 (157)
84 KOG0553 TPR repeat-containing 99.2 3.4E-11 7.3E-16 108.2 9.1 101 50-164 83-183 (304)
85 PLN02789 farnesyltranstransfer 99.2 2E-10 4.3E-15 108.5 14.6 145 11-169 34-181 (320)
86 KOG0548 Molecular co-chaperone 99.2 9.9E-11 2.1E-15 112.3 11.8 112 15-126 3-114 (539)
87 PRK11788 tetratricopeptide rep 99.2 6.5E-10 1.4E-14 109.2 17.7 131 10-142 65-204 (389)
88 PRK10049 pgaA outer membrane p 99.2 2.8E-10 6.1E-15 121.0 15.8 130 10-142 45-174 (765)
89 TIGR02917 PEP_TPR_lipo putativ 99.2 2.4E-10 5.3E-15 123.5 15.2 133 8-142 119-251 (899)
90 TIGR02917 PEP_TPR_lipo putativ 99.2 2.2E-10 4.7E-15 123.9 14.7 130 10-142 766-895 (899)
91 PRK11447 cellulose synthase su 99.2 2.2E-10 4.8E-15 127.2 14.9 122 19-142 274-409 (1157)
92 KOG4648 Uncharacterized conser 99.2 1.5E-10 3.2E-15 105.2 10.7 114 14-127 97-210 (536)
93 PF12895 Apc3: Anaphase-promot 99.2 7.5E-11 1.6E-15 89.0 7.2 82 26-108 1-84 (84)
94 PRK11788 tetratricopeptide rep 99.2 6.6E-10 1.4E-14 109.1 15.9 128 10-139 137-270 (389)
95 CHL00033 ycf3 photosystem I as 99.2 9.9E-10 2.2E-14 94.6 14.6 109 8-116 29-154 (168)
96 KOG2002 TPR-containing nuclear 99.2 1.2E-10 2.6E-15 118.5 9.5 164 8-171 158-349 (1018)
97 KOG3060 Uncharacterized conser 99.1 9.8E-10 2.1E-14 96.2 13.6 149 10-170 82-231 (289)
98 COG5010 TadD Flp pilus assembl 99.1 6.1E-10 1.3E-14 98.3 12.3 132 8-142 61-192 (257)
99 KOG2003 TPR repeat-containing 99.1 2.3E-10 4.9E-15 107.4 9.8 173 9-195 485-659 (840)
100 KOG0550 Molecular chaperone (D 99.1 4.8E-10 1.1E-14 104.3 11.3 124 7-131 242-369 (486)
101 COG4783 Putative Zn-dependent 99.1 1.7E-09 3.6E-14 103.2 15.0 122 11-132 303-424 (484)
102 KOG1173 Anaphase-promoting com 99.1 4.3E-10 9.4E-15 108.4 11.1 131 19-163 385-522 (611)
103 COG4235 Cytochrome c biogenesi 99.1 2E-09 4.2E-14 97.5 14.6 115 8-122 150-267 (287)
104 PF13432 TPR_16: Tetratricopep 99.1 3.8E-10 8.2E-15 80.6 7.6 62 20-81 3-64 (65)
105 PF13432 TPR_16: Tetratricopep 99.1 3.6E-10 7.7E-15 80.7 7.4 65 52-116 1-65 (65)
106 PRK10803 tol-pal system protei 99.1 4.1E-09 8.8E-14 96.7 16.1 109 13-121 141-256 (263)
107 KOG0624 dsRNA-activated protei 99.1 5.2E-09 1.1E-13 95.4 15.7 192 15-208 156-353 (504)
108 KOG1173 Anaphase-promoting com 99.1 1.8E-10 3.8E-15 111.1 6.5 197 8-206 306-535 (611)
109 PF13429 TPR_15: Tetratricopep 99.1 5.1E-10 1.1E-14 104.9 9.3 130 11-142 107-238 (280)
110 PRK15179 Vi polysaccharide bio 99.1 2.5E-09 5.5E-14 110.6 15.2 111 8-118 114-224 (694)
111 KOG0550 Molecular chaperone (D 99.1 4E-10 8.8E-15 104.8 8.1 133 8-142 197-345 (486)
112 PRK10049 pgaA outer membrane p 99.0 2.7E-09 5.9E-14 113.5 15.0 133 7-142 8-140 (765)
113 PRK10866 outer membrane biogen 99.0 6E-09 1.3E-13 94.8 14.4 152 12-163 30-208 (243)
114 PRK14574 hmsH outer membrane p 99.0 3.3E-09 7.1E-14 111.7 14.1 156 9-166 29-205 (822)
115 PF13525 YfiO: Outer membrane 99.0 7E-09 1.5E-13 92.1 13.6 152 12-163 3-174 (203)
116 KOG4162 Predicted calmodulin-b 99.0 2.9E-09 6.3E-14 106.2 11.7 126 14-141 650-777 (799)
117 COG4235 Cytochrome c biogenesi 99.0 1E-08 2.2E-13 92.9 12.6 112 29-142 137-251 (287)
118 KOG1840 Kinesin light chain [C 99.0 1.2E-08 2.7E-13 100.9 14.3 187 5-210 190-400 (508)
119 PLN03088 SGT1, suppressor of 99.0 4.1E-09 9E-14 101.7 10.9 101 51-165 5-105 (356)
120 KOG1128 Uncharacterized conser 99.0 2.1E-09 4.5E-14 106.7 8.6 128 13-142 484-611 (777)
121 CHL00033 ycf3 photosystem I as 98.9 3.2E-09 6.9E-14 91.5 7.7 110 22-131 7-121 (168)
122 PRK14720 transcript cleavage f 98.9 1.6E-08 3.5E-13 105.7 13.9 132 6-142 23-173 (906)
123 KOG4642 Chaperone-dependent E3 98.9 4.1E-09 8.9E-14 91.5 8.0 102 11-112 7-108 (284)
124 PRK10153 DNA-binding transcrip 98.9 2.8E-08 6E-13 100.0 15.2 138 13-165 338-488 (517)
125 KOG1840 Kinesin light chain [C 98.9 1E-08 2.2E-13 101.5 11.7 213 9-244 236-476 (508)
126 KOG4555 TPR repeat-containing 98.9 1.3E-07 2.8E-12 74.6 15.4 106 11-116 40-149 (175)
127 COG4783 Putative Zn-dependent 98.9 4.1E-08 8.9E-13 93.8 14.6 122 8-129 334-455 (484)
128 cd00189 TPR Tetratricopeptide 98.9 1.8E-08 3.8E-13 76.4 10.1 91 50-142 2-92 (100)
129 KOG0545 Aryl-hydrocarbon recep 98.9 2.1E-08 4.6E-13 87.4 11.3 108 11-118 175-300 (329)
130 PF12688 TPR_5: Tetratrico pep 98.9 5.9E-08 1.3E-12 77.6 13.0 96 15-110 2-103 (120)
131 PF13512 TPR_18: Tetratricopep 98.9 8E-08 1.7E-12 78.2 13.9 107 13-119 9-136 (142)
132 PF13371 TPR_9: Tetratricopept 98.9 1.5E-08 3.2E-13 74.1 8.7 67 56-122 3-69 (73)
133 KOG1129 TPR repeat-containing 98.9 1.8E-09 4E-14 97.7 4.4 117 24-142 334-453 (478)
134 COG2956 Predicted N-acetylgluc 98.9 3E-08 6.6E-13 89.9 12.2 140 12-165 105-249 (389)
135 KOG2076 RNA polymerase III tra 98.9 4.1E-08 8.9E-13 99.7 14.0 109 5-113 164-272 (895)
136 KOG4162 Predicted calmodulin-b 98.9 3.1E-08 6.8E-13 99.0 12.9 112 6-117 676-789 (799)
137 PRK02603 photosystem I assembl 98.8 1.1E-08 2.3E-13 88.5 8.6 87 45-131 32-121 (172)
138 PF13371 TPR_9: Tetratricopept 98.8 2E-08 4.3E-13 73.4 8.6 71 20-90 1-71 (73)
139 KOG2002 TPR-containing nuclear 98.8 3.8E-08 8.3E-13 100.6 13.4 123 9-131 302-429 (1018)
140 PF14559 TPR_19: Tetratricopep 98.8 9.9E-09 2.1E-13 73.9 6.8 63 60-122 3-65 (68)
141 PF14559 TPR_19: Tetratricopep 98.8 9.2E-09 2E-13 74.0 6.6 68 24-91 1-68 (68)
142 PRK11906 transcriptional regul 98.8 4.9E-08 1.1E-12 93.8 13.1 137 16-166 257-408 (458)
143 KOG1129 TPR repeat-containing 98.8 3.8E-08 8.2E-13 89.3 11.5 122 12-133 254-375 (478)
144 COG1729 Uncharacterized protei 98.8 1.7E-07 3.8E-12 84.0 15.1 108 15-122 142-255 (262)
145 PF09976 TPR_21: Tetratricopep 98.8 1.5E-07 3.2E-12 78.9 14.0 129 11-142 8-142 (145)
146 PF09976 TPR_21: Tetratricopep 98.8 7.2E-08 1.6E-12 80.8 12.0 98 11-109 45-145 (145)
147 KOG0551 Hsp90 co-chaperone CNS 98.8 4.8E-08 1E-12 88.9 11.4 112 7-118 74-189 (390)
148 PF00149 Metallophos: Calcineu 98.8 1.1E-08 2.3E-13 88.1 7.1 76 223-298 2-82 (200)
149 TIGR02795 tol_pal_ybgF tol-pal 98.8 4.8E-08 1E-12 78.5 10.3 93 48-142 2-100 (119)
150 COG2956 Predicted N-acetylgluc 98.8 1.5E-07 3.3E-12 85.4 14.1 128 13-142 140-273 (389)
151 KOG3060 Uncharacterized conser 98.8 2.6E-07 5.6E-12 81.3 15.0 123 8-130 114-239 (289)
152 PRK09453 phosphodiesterase; Pr 98.8 3E-08 6.4E-13 86.5 9.1 68 223-295 2-77 (182)
153 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.2E-08 6.9E-13 94.9 9.9 71 7-77 68-141 (453)
154 PF06552 TOM20_plant: Plant sp 98.8 1.2E-07 2.6E-12 79.5 12.0 97 30-126 7-124 (186)
155 PRK11906 transcriptional regul 98.8 1.7E-07 3.6E-12 90.2 14.4 113 8-120 289-410 (458)
156 PRK14574 hmsH outer membrane p 98.8 7.2E-08 1.6E-12 101.8 12.9 96 19-114 73-168 (822)
157 cd05804 StaR_like StaR_like; a 98.8 1E-07 2.2E-12 92.4 13.0 129 11-142 40-172 (355)
158 COG0639 ApaH Diadenosine tetra 98.8 6.5E-09 1.4E-13 87.5 4.1 128 296-424 3-155 (155)
159 KOG1156 N-terminal acetyltrans 98.7 1.2E-07 2.5E-12 93.3 12.6 124 10-133 3-126 (700)
160 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 5.9E-08 1.3E-12 93.1 10.3 69 43-111 70-141 (453)
161 TIGR00540 hemY_coli hemY prote 98.7 1.1E-07 2.4E-12 94.0 12.4 129 11-142 260-394 (409)
162 cd00841 MPP_YfcE Escherichia c 98.7 4.1E-08 9E-13 83.3 8.0 81 224-342 2-85 (155)
163 cd05804 StaR_like StaR_like; a 98.7 1.4E-07 3.1E-12 91.3 12.7 105 9-113 109-217 (355)
164 TIGR00540 hemY_coli hemY prote 98.7 6.8E-07 1.5E-11 88.4 17.0 129 12-142 82-211 (409)
165 PF13424 TPR_12: Tetratricopep 98.7 7.6E-08 1.7E-12 71.3 7.1 67 11-77 2-75 (78)
166 COG4785 NlpI Lipoprotein NlpI, 98.7 1.6E-07 3.4E-12 80.7 9.4 111 9-119 60-170 (297)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 7.2E-07 1.6E-11 86.1 15.2 117 21-142 176-292 (395)
168 KOG2003 TPR repeat-containing 98.7 3.1E-07 6.7E-12 86.7 12.1 133 8-142 518-650 (840)
169 KOG1174 Anaphase-promoting com 98.6 5.1E-07 1.1E-11 84.5 13.1 133 8-142 226-392 (564)
170 PRK15331 chaperone protein Sic 98.6 1.1E-07 2.5E-12 79.0 7.6 99 42-142 31-129 (165)
171 PF12895 Apc3: Anaphase-promot 98.6 3E-08 6.5E-13 74.7 3.8 80 60-142 1-82 (84)
172 PRK10747 putative protoheme IX 98.6 3.5E-07 7.6E-12 90.0 12.3 128 9-142 258-385 (398)
173 KOG0543 FKBP-type peptidyl-pro 98.6 4.4E-07 9.4E-12 85.3 12.0 100 14-113 257-357 (397)
174 KOG1174 Anaphase-promoting com 98.6 1.2E-07 2.7E-12 88.5 8.2 144 13-169 299-443 (564)
175 KOG1128 Uncharacterized conser 98.6 3.4E-07 7.4E-12 91.3 11.5 118 14-132 424-569 (777)
176 KOG1127 TPR repeat-containing 98.6 2.2E-07 4.8E-12 95.3 9.7 133 8-142 486-654 (1238)
177 PF08321 PPP5: PPP5 TPR repeat 98.6 2.4E-07 5.2E-12 70.3 7.4 94 122-216 2-95 (95)
178 PRK10153 DNA-binding transcrip 98.6 8E-07 1.7E-11 89.5 13.4 110 7-117 369-488 (517)
179 PF13424 TPR_12: Tetratricopep 98.6 8.6E-08 1.9E-12 71.0 4.7 67 45-111 2-75 (78)
180 PRK10747 putative protoheme IX 98.6 2.7E-06 5.9E-11 83.7 16.5 128 12-142 82-211 (398)
181 cd07397 MPP_DevT Myxococcus xa 98.5 6.3E-07 1.4E-11 80.2 9.8 109 223-342 2-157 (238)
182 TIGR00040 yfcE phosphoesterase 98.5 3.6E-07 7.7E-12 77.8 7.9 63 223-294 2-64 (158)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1E-06 2.2E-11 85.1 11.6 98 14-111 200-297 (395)
184 PRK10803 tol-pal system protei 98.5 1.1E-06 2.5E-11 80.6 11.0 104 48-165 142-252 (263)
185 COG4700 Uncharacterized protei 98.5 1E-05 2.2E-10 68.1 14.8 119 12-131 87-208 (251)
186 PF12850 Metallophos_2: Calcin 98.4 5.6E-07 1.2E-11 76.2 6.1 61 223-296 2-62 (156)
187 KOG0495 HAT repeat protein [RN 98.4 3.5E-06 7.5E-11 83.2 11.8 119 13-131 650-768 (913)
188 PF12688 TPR_5: Tetratrico pep 98.4 4.8E-06 1E-10 66.7 10.7 90 49-140 2-97 (120)
189 KOG1156 N-terminal acetyltrans 98.4 2.4E-06 5.1E-11 84.3 10.5 132 8-141 35-166 (700)
190 KOG1127 TPR repeat-containing 98.3 5E-07 1.1E-11 92.8 5.4 118 14-131 562-679 (1238)
191 KOG0495 HAT repeat protein [RN 98.3 4.1E-06 8.9E-11 82.7 11.4 119 12-130 582-733 (913)
192 PF12569 NARP1: NMDA receptor- 98.3 1.7E-05 3.7E-10 79.6 15.5 99 14-112 194-292 (517)
193 KOG4648 Uncharacterized conser 98.3 8.7E-07 1.9E-11 81.1 5.7 99 51-163 100-198 (536)
194 PRK14720 transcript cleavage f 98.3 1.1E-05 2.3E-10 85.0 14.4 117 10-127 112-268 (906)
195 PF13525 YfiO: Outer membrane 98.3 4.1E-05 8.8E-10 68.0 16.0 124 9-132 37-194 (203)
196 COG4105 ComL DNA uptake lipopr 98.3 2.7E-05 5.9E-10 69.4 14.2 150 13-162 33-199 (254)
197 KOG4234 TPR repeat-containing 98.2 1.5E-05 3.3E-10 67.8 11.1 102 51-166 98-204 (271)
198 PRK10866 outer membrane biogen 98.2 9.2E-05 2E-09 67.5 16.9 123 10-132 65-228 (243)
199 PF12569 NARP1: NMDA receptor- 98.2 4.8E-05 1E-09 76.5 15.8 132 8-141 32-251 (517)
200 KOG1308 Hsp70-interacting prot 98.2 5.7E-07 1.2E-11 82.4 1.9 110 5-114 105-214 (377)
201 PF04733 Coatomer_E: Coatomer 98.2 1.1E-05 2.3E-10 75.5 10.5 120 12-131 129-250 (290)
202 PF13428 TPR_14: Tetratricopep 98.2 4.6E-06 9.9E-11 54.1 5.7 41 83-123 2-42 (44)
203 KOG4555 TPR repeat-containing 98.2 8.7E-06 1.9E-10 64.4 7.9 90 51-142 46-139 (175)
204 PF13431 TPR_17: Tetratricopep 98.2 1.9E-06 4.2E-11 52.3 3.3 32 71-102 2-33 (34)
205 PF13428 TPR_14: Tetratricopep 98.2 4.2E-06 9.1E-11 54.3 5.0 41 50-90 3-43 (44)
206 cd07388 MPP_Tt1561 Thermus the 98.2 5.8E-06 1.3E-10 73.9 7.5 70 223-294 6-75 (224)
207 cd07379 MPP_239FB Homo sapiens 98.1 8.5E-06 1.8E-10 67.3 7.7 60 224-294 2-63 (135)
208 PF14938 SNAP: Soluble NSF att 98.1 9.3E-06 2E-10 76.0 8.3 127 13-142 34-179 (282)
209 COG4785 NlpI Lipoprotein NlpI, 98.0 3.2E-05 6.9E-10 66.8 9.2 77 6-82 91-167 (297)
210 KOG2796 Uncharacterized conser 98.0 3.8E-05 8.3E-10 68.2 9.8 127 14-142 177-310 (366)
211 PF13431 TPR_17: Tetratricopep 98.0 5.1E-06 1.1E-10 50.4 3.1 34 36-69 1-34 (34)
212 PF06552 TOM20_plant: Plant sp 98.0 4.8E-05 1E-09 64.1 9.8 80 8-87 19-119 (186)
213 COG1729 Uncharacterized protei 98.0 4.2E-05 9.1E-10 68.9 9.8 102 51-166 144-251 (262)
214 KOG3785 Uncharacterized conser 98.0 0.00018 3.9E-09 66.5 13.7 118 15-132 58-201 (557)
215 PF00515 TPR_1: Tetratricopept 98.0 1.3E-05 2.8E-10 48.7 4.4 32 83-114 2-33 (34)
216 cd00838 MPP_superfamily metall 98.0 2.3E-05 5E-10 63.5 7.1 66 226-292 2-69 (131)
217 PF04733 Coatomer_E: Coatomer 98.0 6.6E-05 1.4E-09 70.2 10.8 106 14-119 165-273 (290)
218 PF00515 TPR_1: Tetratricopept 98.0 1.6E-05 3.5E-10 48.2 4.4 32 49-80 2-33 (34)
219 cd07394 MPP_Vps29 Homo sapiens 97.9 3.4E-05 7.3E-10 66.8 7.6 58 224-294 2-65 (178)
220 KOG4340 Uncharacterized conser 97.9 0.0001 2.2E-09 66.7 10.6 133 8-142 38-202 (459)
221 PF13512 TPR_18: Tetratricopep 97.9 0.00024 5.2E-09 58.0 12.0 84 47-130 9-98 (142)
222 PF07719 TPR_2: Tetratricopept 97.9 2.9E-05 6.3E-10 47.0 5.1 33 83-115 2-34 (34)
223 PLN03081 pentatricopeptide (PP 97.9 0.00027 5.8E-09 75.0 15.6 126 14-142 391-552 (697)
224 KOG3785 Uncharacterized conser 97.9 2.7E-05 5.9E-10 71.9 6.6 141 22-166 30-187 (557)
225 KOG1941 Acetylcholine receptor 97.8 7.4E-05 1.6E-09 69.3 8.5 176 48-244 83-269 (518)
226 KOG2376 Signal recognition par 97.8 0.00019 4.1E-09 70.6 11.8 123 14-142 12-134 (652)
227 PLN03081 pentatricopeptide (PP 97.8 0.00032 6.9E-09 74.4 14.6 124 14-142 259-384 (697)
228 PF07719 TPR_2: Tetratricopept 97.8 4.9E-05 1.1E-09 46.0 5.1 32 49-80 2-33 (34)
229 PF14938 SNAP: Soluble NSF att 97.8 0.00014 3E-09 68.1 10.1 107 10-116 110-230 (282)
230 KOG4642 Chaperone-dependent E3 97.8 3.4E-05 7.4E-10 67.5 5.4 89 52-142 14-102 (284)
231 PF03704 BTAD: Bacterial trans 97.8 0.00083 1.8E-08 56.1 13.9 97 15-111 7-125 (146)
232 PRK05340 UDP-2,3-diacylglucosa 97.8 6.8E-05 1.5E-09 68.5 7.5 69 223-294 2-83 (241)
233 cd07404 MPP_MS158 Microscilla 97.8 2.1E-05 4.6E-10 67.4 3.9 68 224-294 1-68 (166)
234 PLN03077 Protein ECB2; Provisi 97.7 0.00074 1.6E-08 73.4 16.1 85 20-109 530-616 (857)
235 KOG2376 Signal recognition par 97.7 0.00028 6.1E-09 69.4 11.1 120 18-142 83-248 (652)
236 cd07392 MPP_PAE1087 Pyrobaculu 97.7 6.8E-05 1.5E-09 65.5 6.4 66 224-296 1-67 (188)
237 COG0457 NrfG FOG: TPR repeat [ 97.7 0.00093 2E-08 58.7 13.7 131 10-142 91-226 (291)
238 KOG2471 TPR repeat-containing 97.7 0.00013 2.9E-09 70.1 8.2 121 12-132 238-385 (696)
239 PLN03077 Protein ECB2; Provisi 97.7 0.0011 2.4E-08 72.1 16.1 126 13-141 553-714 (857)
240 PRK11340 phosphodiesterase Yae 97.7 0.00012 2.7E-09 68.0 7.2 71 221-294 49-125 (271)
241 PLN03218 maturation of RBCL 1; 97.7 0.0028 6.1E-08 69.4 18.6 97 14-111 542-643 (1060)
242 COG3118 Thioredoxin domain-con 97.6 0.0033 7.1E-08 57.4 15.3 117 14-130 134-286 (304)
243 KOG1941 Acetylcholine receptor 97.6 0.00025 5.3E-09 65.9 8.1 126 15-142 123-270 (518)
244 KOG1130 Predicted G-alpha GTPa 97.6 3.9E-05 8.5E-10 72.2 2.8 129 12-142 193-339 (639)
245 KOG1310 WD40 repeat protein [G 97.6 0.00027 5.8E-09 68.6 8.3 108 9-116 369-479 (758)
246 KOG1130 Predicted G-alpha GTPa 97.6 0.00027 5.8E-09 66.7 8.1 120 12-131 233-370 (639)
247 KOG0376 Serine-threonine phosp 97.6 3.1E-05 6.7E-10 74.5 1.9 118 191-310 15-132 (476)
248 KOG2053 Mitochondrial inherita 97.5 0.0013 2.7E-08 67.9 13.0 110 22-132 17-126 (932)
249 cd07385 MPP_YkuE_C Bacillus su 97.5 0.00017 3.8E-09 64.9 6.3 70 223-295 3-77 (223)
250 cd07390 MPP_AQ1575 Aquifex aeo 97.5 0.00027 5.9E-09 60.6 6.9 42 250-296 43-84 (168)
251 COG3071 HemY Uncharacterized e 97.5 0.0052 1.1E-07 58.0 15.4 127 12-140 82-209 (400)
252 COG3071 HemY Uncharacterized e 97.5 0.0023 5E-08 60.4 13.0 117 12-132 261-377 (400)
253 KOG4340 Uncharacterized conser 97.5 0.00099 2.1E-08 60.5 9.8 86 23-108 19-104 (459)
254 PLN03218 maturation of RBCL 1; 97.5 0.0029 6.3E-08 69.3 15.3 127 13-142 506-638 (1060)
255 PF13181 TPR_8: Tetratricopept 97.4 0.00027 5.9E-09 42.7 4.3 32 83-114 2-33 (34)
256 PF12968 DUF3856: Domain of Un 97.4 0.0077 1.7E-07 47.1 13.0 93 19-111 14-129 (144)
257 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.0014 3.1E-08 43.9 7.6 48 83-130 2-49 (53)
258 cd07403 MPP_TTHA0053 Thermus t 97.4 0.00048 1E-08 56.2 6.3 55 226-292 2-56 (129)
259 KOG2796 Uncharacterized conser 97.4 0.0011 2.4E-08 59.1 8.7 107 10-116 208-320 (366)
260 PF13181 TPR_8: Tetratricopept 97.3 0.0004 8.6E-09 41.9 4.3 31 49-79 2-32 (34)
261 KOG3824 Huntingtin interacting 97.3 0.00095 2E-08 60.8 8.3 85 7-91 109-193 (472)
262 KOG1586 Protein required for f 97.3 0.0094 2E-07 52.5 14.0 101 11-112 31-144 (288)
263 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0072 1.6E-07 52.9 13.9 128 13-142 58-191 (291)
264 TIGR03729 acc_ester putative p 97.3 0.00053 1.2E-08 62.5 6.5 67 224-294 2-74 (239)
265 COG4700 Uncharacterized protei 97.3 0.0044 9.6E-08 52.6 11.2 102 8-110 118-221 (251)
266 KOG1915 Cell cycle control pro 97.3 0.0058 1.2E-07 59.0 12.9 128 12-142 71-198 (677)
267 cd07391 MPP_PF1019 Pyrococcus 97.3 0.0011 2.3E-08 57.2 7.6 47 250-296 42-90 (172)
268 PF05843 Suf: Suppressor of fo 97.2 0.0027 5.9E-08 59.3 10.6 116 16-131 3-122 (280)
269 COG2976 Uncharacterized protei 97.2 0.0056 1.2E-07 52.4 11.1 101 14-116 89-193 (207)
270 PRK10941 hypothetical protein; 97.2 0.0053 1.2E-07 56.5 11.8 78 49-126 182-259 (269)
271 KOG0545 Aryl-hydrocarbon recep 97.1 0.0016 3.5E-08 57.5 7.4 102 48-163 178-297 (329)
272 cd07396 MPP_Nbla03831 Homo sap 97.1 0.0016 3.4E-08 60.5 7.6 73 223-296 2-88 (267)
273 PF04781 DUF627: Protein of un 97.1 0.0057 1.2E-07 47.5 9.3 92 20-111 2-107 (111)
274 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0031 6.8E-08 58.1 9.1 95 48-144 81-179 (390)
275 KOG3081 Vesicle coat complex C 97.1 0.014 3.1E-07 52.4 12.8 83 49-131 170-256 (299)
276 KOG2053 Mitochondrial inherita 97.1 0.0091 2E-07 61.9 13.0 109 8-117 37-145 (932)
277 TIGR00619 sbcd exonuclease Sbc 97.1 0.0016 3.6E-08 59.7 7.2 71 223-294 2-88 (253)
278 TIGR01854 lipid_A_lpxH UDP-2,3 97.0 0.0012 2.7E-08 59.7 6.0 67 225-294 2-81 (231)
279 KOG2610 Uncharacterized conser 97.0 0.0079 1.7E-07 55.6 10.9 123 17-141 106-232 (491)
280 PF03704 BTAD: Bacterial trans 97.0 0.006 1.3E-07 50.8 9.6 64 14-77 62-125 (146)
281 KOG4507 Uncharacterized conser 97.0 0.0025 5.3E-08 62.9 8.0 104 24-127 617-721 (886)
282 PF04184 ST7: ST7 protein; In 97.0 0.0062 1.3E-07 59.4 10.6 120 19-142 173-319 (539)
283 KOG1586 Protein required for f 97.0 0.024 5.3E-07 49.9 13.1 149 13-168 72-233 (288)
284 cd07402 MPP_GpdQ Enterobacter 97.0 0.0027 5.8E-08 57.8 7.6 67 224-294 2-83 (240)
285 PF13174 TPR_6: Tetratricopept 96.9 0.0017 3.8E-08 38.6 4.2 31 84-114 2-32 (33)
286 cd07400 MPP_YydB Bacillus subt 96.9 0.0038 8.2E-08 51.9 7.7 43 250-293 36-80 (144)
287 KOG1915 Cell cycle control pro 96.9 0.015 3.3E-07 56.2 12.2 127 15-142 405-531 (677)
288 COG0622 Predicted phosphoester 96.9 0.0025 5.4E-08 54.5 6.3 86 223-342 3-91 (172)
289 PF10300 DUF3808: Protein of u 96.9 0.0082 1.8E-07 60.3 11.0 84 29-112 248-335 (468)
290 PRK04841 transcriptional regul 96.9 0.016 3.4E-07 63.7 14.1 97 15-111 492-602 (903)
291 PRK11148 cyclic 3',5'-adenosin 96.9 0.0033 7.2E-08 58.6 7.5 71 222-294 15-98 (275)
292 KOG1585 Protein required for f 96.9 0.055 1.2E-06 48.1 14.3 103 13-115 30-143 (308)
293 KOG3824 Huntingtin interacting 96.9 0.0037 8.1E-08 57.0 7.4 74 52-125 120-193 (472)
294 PRK04841 transcriptional regul 96.9 0.014 3E-07 64.0 13.5 128 13-142 451-597 (903)
295 PF05843 Suf: Suppressor of fo 96.8 0.02 4.3E-07 53.5 12.5 108 12-119 33-144 (280)
296 PF15015 NYD-SP12_N: Spermatog 96.8 0.054 1.2E-06 51.8 15.0 97 15-111 177-291 (569)
297 PHA02546 47 endonuclease subun 96.8 0.0029 6.2E-08 60.9 6.8 71 223-294 2-89 (340)
298 KOG3081 Vesicle coat complex C 96.8 0.051 1.1E-06 48.9 13.9 105 14-118 169-278 (299)
299 KOG1070 rRNA processing protei 96.8 0.041 8.9E-07 59.8 15.5 125 15-142 1498-1624(1710)
300 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.8 0.0026 5.7E-08 58.4 6.1 70 224-294 1-86 (262)
301 PF13176 TPR_7: Tetratricopept 96.8 0.003 6.4E-08 38.7 4.3 26 85-110 2-27 (36)
302 PF13174 TPR_6: Tetratricopept 96.8 0.0031 6.8E-08 37.4 4.4 31 16-46 2-32 (33)
303 PF14561 TPR_20: Tetratricopep 96.8 0.018 3.9E-07 43.5 9.4 65 33-97 7-73 (90)
304 cd08166 MPP_Cdc1_like_1 unchar 96.8 0.0023 5E-08 55.6 5.1 45 250-294 43-93 (195)
305 KOG2396 HAT (Half-A-TPR) repea 96.8 0.031 6.8E-07 54.5 13.1 92 32-123 89-181 (568)
306 cd07398 MPP_YbbF-LpxH Escheric 96.7 0.0039 8.5E-08 55.8 6.6 47 249-296 30-84 (217)
307 cd07383 MPP_Dcr2 Saccharomyces 96.7 0.0037 8E-08 55.2 6.3 70 223-292 4-87 (199)
308 PRK10941 hypothetical protein; 96.7 0.027 5.8E-07 51.9 12.0 78 14-91 181-258 (269)
309 cd00840 MPP_Mre11_N Mre11 nucl 96.7 0.0036 7.7E-08 56.2 6.1 73 224-297 2-92 (223)
310 KOG3364 Membrane protein invol 96.7 0.05 1.1E-06 43.8 11.5 84 47-130 31-119 (149)
311 PF10300 DUF3808: Protein of u 96.7 0.021 4.5E-07 57.4 11.9 104 8-111 261-369 (468)
312 PF09613 HrpB1_HrpK: Bacterial 96.7 0.25 5.5E-06 41.3 16.2 114 10-126 6-120 (160)
313 cd07393 MPP_DR1119 Deinococcus 96.6 0.0049 1.1E-07 55.9 6.6 41 249-293 41-83 (232)
314 COG4105 ComL DNA uptake lipopr 96.6 0.019 4.1E-07 51.6 9.9 72 47-118 33-107 (254)
315 PF13176 TPR_7: Tetratricopept 96.6 0.0047 1E-07 37.8 4.3 23 17-39 2-24 (36)
316 PRK04036 DNA polymerase II sma 96.6 0.0057 1.2E-07 61.9 7.1 74 221-296 243-345 (504)
317 cd07399 MPP_YvnB Bacillus subt 96.5 0.0065 1.4E-07 54.3 6.7 104 224-342 3-117 (214)
318 KOG4814 Uncharacterized conser 96.5 0.042 9.2E-07 55.1 12.0 98 15-112 355-458 (872)
319 smart00028 TPR Tetratricopepti 96.5 0.0055 1.2E-07 35.4 4.0 29 51-79 4-32 (34)
320 COG4976 Predicted methyltransf 96.4 0.0044 9.6E-08 54.3 4.6 60 22-81 3-62 (287)
321 PF04184 ST7: ST7 protein; In 96.4 0.061 1.3E-06 52.7 12.6 56 18-73 263-320 (539)
322 smart00028 TPR Tetratricopepti 96.4 0.0064 1.4E-07 35.1 3.9 32 83-114 2-33 (34)
323 COG4186 Predicted phosphoester 96.4 0.014 3.1E-07 47.8 6.8 45 249-297 45-89 (186)
324 PF14561 TPR_20: Tetratricopep 96.3 0.026 5.7E-07 42.7 7.9 65 67-131 7-73 (90)
325 TIGR00024 SbcD_rel_arch putati 96.3 0.011 2.4E-07 53.1 6.7 42 250-295 59-103 (225)
326 KOG0546 HSP90 co-chaperone CPR 96.3 0.0082 1.8E-07 56.0 5.7 118 14-131 222-358 (372)
327 cd07384 MPP_Cdc1_like Saccharo 96.3 0.0066 1.4E-07 52.1 4.8 46 250-295 46-101 (171)
328 TIGR00583 mre11 DNA repair pro 96.2 0.016 3.5E-07 56.7 7.9 73 222-295 4-124 (405)
329 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.026 5.7E-07 37.8 6.5 36 16-51 3-38 (53)
330 cd08165 MPP_MPPE1 human MPPE1 96.2 0.0096 2.1E-07 50.3 5.4 46 250-295 39-90 (156)
331 COG4976 Predicted methyltransf 96.1 0.0078 1.7E-07 52.8 4.6 62 56-117 3-64 (287)
332 PF02259 FAT: FAT domain; Int 96.1 0.18 3.8E-06 48.6 14.8 121 10-130 142-306 (352)
333 cd08163 MPP_Cdc1 Saccharomyces 96.1 0.031 6.8E-07 51.3 8.8 78 250-338 46-130 (257)
334 PRK10966 exonuclease subunit S 96.1 0.012 2.6E-07 57.8 6.4 71 223-295 2-88 (407)
335 PF13281 DUF4071: Domain of un 96.1 0.26 5.6E-06 47.4 15.1 113 10-122 175-345 (374)
336 KOG1308 Hsp70-interacting prot 96.1 0.0014 3E-08 60.7 -0.2 83 58-142 124-206 (377)
337 cd07395 MPP_CSTP1 Homo sapiens 96.0 0.027 5.8E-07 52.1 7.8 71 224-294 7-99 (262)
338 KOG2610 Uncharacterized conser 95.9 0.058 1.2E-06 50.1 9.4 102 8-109 131-236 (491)
339 cd08164 MPP_Ted1 Saccharomyces 95.9 0.016 3.4E-07 50.4 5.6 66 229-294 24-111 (193)
340 COG1409 Icc Predicted phosphoh 95.9 0.029 6.3E-07 52.5 8.0 73 223-298 2-82 (301)
341 PF10602 RPN7: 26S proteasome 95.9 0.16 3.6E-06 43.7 11.8 101 11-111 33-142 (177)
342 cd07380 MPP_CWF19_N Schizosacc 95.9 0.02 4.3E-07 47.8 5.9 67 225-292 1-68 (150)
343 COG2908 Uncharacterized protei 95.9 0.034 7.3E-07 49.4 7.4 101 226-345 2-118 (237)
344 PF09613 HrpB1_HrpK: Bacterial 95.9 0.16 3.5E-06 42.4 11.0 86 49-134 11-96 (160)
345 KOG2047 mRNA splicing factor [ 95.8 0.29 6.3E-06 49.5 14.4 127 15-143 388-536 (835)
346 COG3914 Spy Predicted O-linked 95.6 0.25 5.5E-06 49.4 13.1 117 10-127 64-187 (620)
347 cd07401 MPP_TMEM62_N Homo sapi 95.6 0.032 6.9E-07 51.4 6.7 45 251-295 35-90 (256)
348 PF09986 DUF2225: Uncharacteri 95.6 0.15 3.2E-06 45.4 10.7 91 25-115 88-198 (214)
349 cd00839 MPP_PAPs purple acid p 95.6 0.029 6.4E-07 52.7 6.5 68 223-295 6-82 (294)
350 KOG1070 rRNA processing protei 95.5 0.24 5.2E-06 54.2 13.1 145 13-159 1529-1680(1710)
351 COG5191 Uncharacterized conser 95.4 0.044 9.6E-07 50.3 6.5 88 37-124 96-184 (435)
352 KOG0530 Protein farnesyltransf 95.3 0.51 1.1E-05 42.6 12.7 114 19-132 47-163 (318)
353 PF13281 DUF4071: Domain of un 95.3 0.3 6.6E-06 47.0 12.3 102 14-115 141-259 (374)
354 COG1408 Predicted phosphohydro 95.3 0.044 9.5E-07 51.0 6.5 73 221-297 44-121 (284)
355 PF10579 Rapsyn_N: Rapsyn N-te 95.3 0.24 5.2E-06 35.9 8.7 65 13-77 5-72 (80)
356 KOG2471 TPR repeat-containing 95.2 0.027 5.8E-07 54.8 4.8 82 13-94 282-381 (696)
357 KOG3617 WD40 and TPR repeat-co 95.2 0.16 3.5E-06 52.6 10.4 100 12-111 856-996 (1416)
358 KOG1585 Protein required for f 95.2 1 2.2E-05 40.3 13.9 129 14-142 71-214 (308)
359 cd07386 MPP_DNA_pol_II_small_a 95.1 0.029 6.2E-07 51.2 4.5 44 250-295 36-95 (243)
360 cd00845 MPP_UshA_N_like Escher 95.0 0.042 9.1E-07 50.4 5.5 66 224-294 3-82 (252)
361 COG2912 Uncharacterized conser 95.0 0.21 4.5E-06 45.5 9.5 78 49-126 182-259 (269)
362 KOG2047 mRNA splicing factor [ 95.0 0.27 5.9E-06 49.7 11.0 131 12-142 423-574 (835)
363 PF08424 NRDE-2: NRDE-2, neces 94.9 0.75 1.6E-05 43.9 13.9 105 7-111 12-131 (321)
364 KOG1550 Extracellular protein 94.9 0.38 8.2E-06 49.6 12.6 110 12-127 242-371 (552)
365 KOG3662 Cell division control 94.9 0.051 1.1E-06 52.4 5.7 60 235-294 79-144 (410)
366 TIGR02561 HrpB1_HrpK type III 94.8 0.59 1.3E-05 38.5 10.7 87 12-98 8-94 (153)
367 COG2976 Uncharacterized protei 94.7 0.39 8.4E-06 41.4 9.9 88 51-142 92-183 (207)
368 COG0790 FOG: TPR repeat, SEL1 94.7 1.1 2.4E-05 41.9 14.3 107 13-123 108-230 (292)
369 PF13374 TPR_10: Tetratricopep 94.7 0.085 1.8E-06 32.9 4.7 29 83-111 3-31 (42)
370 PF13374 TPR_10: Tetratricopep 94.7 0.08 1.7E-06 33.0 4.6 28 15-42 3-30 (42)
371 PF08424 NRDE-2: NRDE-2, neces 94.6 0.72 1.6E-05 44.0 12.7 91 34-124 5-107 (321)
372 PRK13184 pknD serine/threonine 94.4 0.44 9.6E-06 51.5 11.8 111 18-129 479-599 (932)
373 COG2912 Uncharacterized conser 94.1 0.41 8.8E-06 43.6 9.3 75 16-90 183-257 (269)
374 KOG4507 Uncharacterized conser 94.1 0.29 6.3E-06 48.9 8.9 102 16-117 214-318 (886)
375 PF02259 FAT: FAT domain; Int 94.0 0.69 1.5E-05 44.4 11.7 102 13-114 183-341 (352)
376 KOG3364 Membrane protein invol 93.9 0.7 1.5E-05 37.4 9.2 79 13-91 31-114 (149)
377 TIGR02561 HrpB1_HrpK type III 93.9 0.85 1.9E-05 37.6 9.9 83 52-134 14-96 (153)
378 KOG1258 mRNA processing protei 93.9 2.7 5.9E-05 42.4 15.2 126 6-131 289-415 (577)
379 COG0420 SbcD DNA repair exonuc 93.8 0.18 3.8E-06 49.6 7.1 71 224-295 3-89 (390)
380 KOG2300 Uncharacterized conser 93.7 1.5 3.2E-05 43.2 12.6 131 12-144 5-153 (629)
381 KOG4151 Myosin assembly protei 93.6 0.29 6.3E-06 50.6 8.2 119 11-129 50-174 (748)
382 KOG1550 Extracellular protein 93.6 1.3 2.7E-05 45.8 13.0 105 16-126 290-406 (552)
383 COG2129 Predicted phosphoester 93.6 0.24 5.3E-06 43.6 6.6 74 222-297 4-80 (226)
384 KOG0530 Protein farnesyltransf 93.5 0.26 5.7E-06 44.4 6.8 121 7-127 105-232 (318)
385 PF10373 EST1_DNA_bind: Est1 D 93.5 0.28 6.1E-06 45.5 7.7 62 67-128 1-62 (278)
386 PF07720 TPR_3: Tetratricopept 93.3 0.33 7.1E-06 29.6 5.1 32 83-114 2-35 (36)
387 PF12968 DUF3856: Domain of Un 93.3 1.2 2.7E-05 35.1 9.3 68 10-77 51-129 (144)
388 COG1407 Predicted ICC-like pho 93.2 0.25 5.3E-06 44.2 6.2 77 223-302 21-118 (235)
389 PF09986 DUF2225: Uncharacteri 93.2 1 2.2E-05 40.1 10.1 81 9-89 113-207 (214)
390 PF04781 DUF627: Protein of un 93.1 1.1 2.5E-05 34.9 9.0 72 54-125 2-87 (111)
391 COG5191 Uncharacterized conser 93.1 0.17 3.6E-06 46.7 5.1 83 6-88 99-182 (435)
392 KOG0529 Protein geranylgeranyl 93.1 1.4 3.1E-05 42.4 11.4 103 27-129 88-196 (421)
393 COG3118 Thioredoxin domain-con 93.1 0.93 2E-05 41.8 9.8 57 51-107 137-193 (304)
394 PF12862 Apc5: Anaphase-promot 92.9 0.6 1.3E-05 35.5 7.3 55 59-113 9-72 (94)
395 PF12862 Apc5: Anaphase-promot 92.9 0.57 1.2E-05 35.7 7.2 58 22-79 6-72 (94)
396 PF07079 DUF1347: Protein of u 92.8 3 6.4E-05 40.8 13.1 124 14-142 379-519 (549)
397 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.25 5.4E-06 30.5 4.0 29 83-111 2-30 (38)
398 PF14582 Metallophos_3: Metall 92.7 0.14 3E-06 45.1 3.8 72 223-296 7-104 (255)
399 KOG2396 HAT (Half-A-TPR) repea 92.6 0.77 1.7E-05 45.2 9.0 77 11-87 102-179 (568)
400 COG3629 DnrI DNA-binding trans 92.5 0.79 1.7E-05 42.3 8.6 80 30-111 137-216 (280)
401 PRK15180 Vi polysaccharide bio 92.5 0.66 1.4E-05 45.4 8.4 119 22-142 297-415 (831)
402 cd07410 MPP_CpdB_N Escherichia 92.4 0.19 4.1E-06 46.8 4.7 64 224-293 3-94 (277)
403 PF10602 RPN7: 26S proteasome 92.3 1.6 3.5E-05 37.6 10.0 65 48-112 36-103 (177)
404 PF08631 SPO22: Meiosis protei 92.2 7.9 0.00017 36.0 15.3 102 12-113 33-152 (278)
405 cd07378 MPP_ACP5 Homo sapiens 92.0 0.26 5.7E-06 45.8 5.3 70 224-294 3-83 (277)
406 KOG2300 Uncharacterized conser 91.8 7.2 0.00016 38.6 14.4 115 12-130 365-492 (629)
407 KOG4814 Uncharacterized conser 91.8 1.3 2.8E-05 45.0 9.7 82 50-131 356-443 (872)
408 PF04910 Tcf25: Transcriptiona 91.7 2.2 4.8E-05 41.3 11.3 83 39-121 31-143 (360)
409 PF07720 TPR_3: Tetratricopept 91.6 0.7 1.5E-05 28.1 5.0 29 51-79 4-34 (36)
410 COG3914 Spy Predicted O-linked 91.6 1.5 3.3E-05 44.1 9.9 96 32-127 49-147 (620)
411 KOG1310 WD40 repeat protein [G 91.6 0.64 1.4E-05 46.0 7.2 80 61-142 387-469 (758)
412 KOG0985 Vesicle coat protein c 91.5 2.7 5.9E-05 45.1 12.0 62 11-77 1101-1162(1666)
413 PF10516 SHNi-TPR: SHNi-TPR; 91.4 0.36 7.8E-06 29.8 3.6 30 49-78 2-31 (38)
414 PF10579 Rapsyn_N: Rapsyn N-te 91.4 2.1 4.6E-05 31.1 8.0 60 51-110 9-71 (80)
415 PF08631 SPO22: Meiosis protei 91.4 4.1 8.8E-05 37.9 12.4 97 24-120 3-125 (278)
416 KOG3617 WD40 and TPR repeat-co 91.4 4.2 9E-05 42.8 12.9 61 17-77 915-996 (1416)
417 PF07721 TPR_4: Tetratricopept 91.1 0.35 7.6E-06 26.9 3.1 23 84-106 3-25 (26)
418 PF10373 EST1_DNA_bind: Est1 D 90.9 0.77 1.7E-05 42.5 7.1 62 33-94 1-62 (278)
419 PF04910 Tcf25: Transcriptiona 90.8 2.9 6.3E-05 40.5 11.0 102 14-115 103-226 (360)
420 PF07079 DUF1347: Protein of u 90.7 2.4 5.2E-05 41.4 10.0 55 17-72 465-519 (549)
421 COG3629 DnrI DNA-binding trans 90.5 1.8 3.8E-05 40.1 8.8 79 64-146 137-215 (280)
422 COG3898 Uncharacterized membra 90.5 7.7 0.00017 37.3 12.9 120 21-142 161-287 (531)
423 COG1311 HYS2 Archaeal DNA poly 90.0 1.4 3.1E-05 43.3 8.1 184 223-422 227-449 (481)
424 PLN02533 probable purple acid 89.7 0.52 1.1E-05 46.8 5.1 69 222-294 140-211 (427)
425 KOG0529 Protein geranylgeranyl 89.7 18 0.00038 35.2 14.8 175 26-214 40-229 (421)
426 PF14863 Alkyl_sulf_dimr: Alky 89.6 1.7 3.6E-05 35.9 7.1 46 17-62 73-118 (141)
427 KOG0918 Selenium-binding prote 89.5 0.014 3.1E-07 55.1 -5.7 100 248-354 46-149 (476)
428 PF07721 TPR_4: Tetratricopept 89.4 0.49 1.1E-05 26.3 2.7 21 51-71 4-24 (26)
429 PF11207 DUF2989: Protein of u 89.3 1.7 3.6E-05 37.9 7.2 79 24-103 116-199 (203)
430 cd07412 MPP_YhcR_N Bacillus su 89.2 0.54 1.2E-05 44.1 4.6 66 224-294 3-88 (288)
431 KOG1914 mRNA cleavage and poly 89.2 4.4 9.6E-05 40.5 10.7 71 6-77 12-82 (656)
432 COG0790 FOG: TPR repeat, SEL1 89.0 7.8 0.00017 36.1 12.4 108 15-126 74-197 (292)
433 KOG1839 Uncharacterized protei 89.0 3 6.6E-05 45.9 10.3 105 8-112 967-1087(1236)
434 COG4649 Uncharacterized protei 88.8 14 0.0003 31.6 11.8 42 83-125 168-209 (221)
435 cd07408 MPP_SA0022_N Staphyloc 88.6 0.85 1.8E-05 41.9 5.4 64 224-293 3-81 (257)
436 COG3898 Uncharacterized membra 88.3 9 0.0002 36.9 11.7 96 14-110 120-216 (531)
437 PF11207 DUF2989: Protein of u 88.3 5.3 0.00011 34.9 9.6 75 61-139 120-199 (203)
438 cd07411 MPP_SoxB_N Thermus the 88.2 0.96 2.1E-05 41.8 5.5 55 234-294 35-95 (264)
439 PF15015 NYD-SP12_N: Spermatog 87.8 3.3 7.2E-05 40.0 8.7 82 55-138 183-282 (569)
440 KOG2041 WD40 repeat protein [G 87.8 3.7 8.1E-05 42.3 9.4 88 9-108 791-878 (1189)
441 KOG3807 Predicted membrane pro 87.0 16 0.00035 34.4 12.3 95 17-113 187-306 (556)
442 COG3947 Response regulator con 86.4 2.8 6E-05 38.6 7.0 57 52-108 283-339 (361)
443 COG2909 MalT ATP-dependent tra 86.3 25 0.00055 37.5 14.7 101 12-112 413-527 (894)
444 PF09670 Cas_Cas02710: CRISPR- 86.2 19 0.00041 35.2 13.4 69 9-77 124-198 (379)
445 PF06874 FBPase_2: Firmicute f 85.9 0.56 1.2E-05 47.6 2.6 39 250-293 185-223 (640)
446 KOG2581 26S proteasome regulat 85.8 14 0.0003 35.8 11.5 103 14-116 169-281 (493)
447 KOG0890 Protein kinase of the 85.8 11 0.00024 44.4 12.6 116 9-126 1665-1799(2382)
448 COG4455 ImpE Protein of avirul 85.7 25 0.00055 31.2 12.9 63 20-82 7-69 (273)
449 PRK15180 Vi polysaccharide bio 85.7 2.1 4.6E-05 42.0 6.2 105 11-115 320-424 (831)
450 COG1768 Predicted phosphohydro 85.3 1.8 3.9E-05 36.7 4.9 68 222-295 17-87 (230)
451 COG3947 Response regulator con 85.0 3.5 7.6E-05 38.0 6.9 59 16-74 281-339 (361)
452 smart00386 HAT HAT (Half-A-TPR 84.5 2.8 6.1E-05 23.9 4.4 29 28-56 1-29 (33)
453 KOG1839 Uncharacterized protei 84.1 7.2 0.00016 43.2 9.9 109 3-111 1004-1128(1236)
454 cd00842 MPP_ASMase acid sphing 83.4 3.3 7.1E-05 38.9 6.6 72 226-297 42-125 (296)
455 PF10345 Cohesin_load: Cohesin 83.2 64 0.0014 33.8 17.4 110 10-120 55-179 (608)
456 COG4941 Predicted RNA polymera 83.2 10 0.00022 35.7 9.2 95 29-124 311-407 (415)
457 cd02682 MIT_AAA_Arch MIT: doma 83.1 9.7 0.00021 27.5 7.3 31 12-42 4-34 (75)
458 cd07406 MPP_CG11883_N Drosophi 82.8 2.5 5.4E-05 38.9 5.4 58 231-293 20-82 (257)
459 COG4455 ImpE Protein of avirul 82.8 12 0.00026 33.2 9.0 62 56-117 9-70 (273)
460 cd07409 MPP_CD73_N CD73 ecto-5 82.7 2.8 6E-05 39.1 5.7 56 234-294 34-94 (281)
461 KOG0546 HSP90 co-chaperone CPR 82.3 1 2.2E-05 42.5 2.5 83 15-97 276-358 (372)
462 PF11817 Foie-gras_1: Foie gra 82.1 7.7 0.00017 35.4 8.3 61 48-108 178-244 (247)
463 KOG1914 mRNA cleavage and poly 81.9 9 0.00019 38.5 8.8 73 38-111 10-82 (656)
464 KOG2041 WD40 repeat protein [G 81.1 2.2 4.8E-05 43.8 4.5 127 12-142 690-876 (1189)
465 PF04053 Coatomer_WDAD: Coatom 80.7 24 0.00051 35.3 11.6 58 17-74 298-373 (443)
466 PF10255 Paf67: RNA polymerase 80.6 8.7 0.00019 37.6 8.3 98 16-114 124-231 (404)
467 KOG2422 Uncharacterized conser 80.6 36 0.00079 34.6 12.5 98 16-114 344-451 (665)
468 PF11817 Foie-gras_1: Foie gra 79.6 17 0.00037 33.1 9.7 50 83-132 179-234 (247)
469 KOG3616 Selective LIM binding 79.1 24 0.00052 36.9 11.0 208 22-243 623-875 (1636)
470 smart00386 HAT HAT (Half-A-TPR 79.1 6.8 0.00015 22.2 4.7 27 97-123 2-28 (33)
471 KOG3783 Uncharacterized conser 78.9 18 0.00039 36.3 9.9 67 50-116 451-525 (546)
472 KOG0686 COP9 signalosome, subu 78.8 17 0.00036 35.3 9.3 94 15-108 151-255 (466)
473 cd02682 MIT_AAA_Arch MIT: doma 78.7 13 0.00029 26.8 6.7 33 99-131 30-62 (75)
474 TIGR02710 CRISPR-associated pr 78.5 50 0.0011 32.2 12.6 66 8-73 122-196 (380)
475 TIGR00282 metallophosphoestera 78.4 4.7 0.0001 37.1 5.5 66 223-293 2-70 (266)
476 PF14863 Alkyl_sulf_dimr: Alky 78.2 13 0.00028 30.6 7.5 51 81-131 69-119 (141)
477 TIGR03504 FimV_Cterm FimV C-te 78.2 5 0.00011 25.7 4.0 25 86-110 3-27 (44)
478 PF10255 Paf67: RNA polymerase 77.8 3.7 8.1E-05 40.1 4.9 61 51-111 125-193 (404)
479 PRK09419 bifunctional 2',3'-cy 77.7 3.2 6.8E-05 47.0 5.0 66 222-293 661-735 (1163)
480 cd07387 MPP_PolD2_C PolD2 (DNA 76.4 11 0.00025 34.4 7.4 126 282-424 95-238 (257)
481 KOG2561 Adaptor protein NUB1, 74.5 24 0.00053 34.5 9.1 97 15-111 164-296 (568)
482 cd07382 MPP_DR1281 Deinococcus 74.1 8.3 0.00018 35.3 5.9 67 223-294 1-70 (255)
483 PF04190 DUF410: Protein of un 73.7 61 0.0013 29.8 11.6 100 8-107 4-115 (260)
484 KOG2422 Uncharacterized conser 73.6 88 0.0019 32.0 13.0 102 28-129 252-390 (665)
485 TIGR03504 FimV_Cterm FimV C-te 73.5 7.7 0.00017 24.8 3.9 25 18-42 3-27 (44)
486 KOG1432 Predicted DNA repair e 73.5 5.7 0.00012 37.5 4.6 46 249-295 100-148 (379)
487 PF13226 DUF4034: Domain of un 72.8 46 0.00099 30.9 10.3 112 20-131 6-148 (277)
488 KOG0985 Vesicle coat protein c 72.5 33 0.00071 37.5 10.2 106 17-130 1197-1327(1666)
489 PRK15490 Vi polysaccharide bio 72.2 36 0.00079 35.0 10.3 89 16-106 7-98 (578)
490 PRK13184 pknD serine/threonine 72.0 33 0.00071 37.6 10.6 103 14-119 512-628 (932)
491 cd02681 MIT_calpain7_1 MIT: do 71.6 11 0.00023 27.4 4.8 30 13-42 5-34 (76)
492 PF09205 DUF1955: Domain of un 71.5 25 0.00055 28.6 7.2 55 57-111 95-149 (161)
493 PF12854 PPR_1: PPR repeat 71.1 10 0.00023 22.4 4.0 27 81-107 6-32 (34)
494 KOG0890 Protein kinase of the 71.1 2.2E+02 0.0048 34.5 16.9 150 30-190 1645-1811(2382)
495 KOG2863 RNA lariat debranching 71.0 6.6 0.00014 37.2 4.4 73 223-296 2-90 (456)
496 PF04212 MIT: MIT (microtubule 70.8 12 0.00027 26.3 5.0 30 13-42 4-33 (69)
497 KOG2476 Uncharacterized conser 70.6 11 0.00024 37.0 5.9 69 222-291 6-75 (528)
498 PF07219 HemY_N: HemY protein 70.5 24 0.00051 27.5 7.0 44 53-96 64-107 (108)
499 COG2909 MalT ATP-dependent tra 70.0 80 0.0017 34.0 12.4 87 12-98 456-553 (894)
500 COG4649 Uncharacterized protei 69.7 72 0.0016 27.4 10.8 124 17-142 61-191 (221)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-77 Score=507.49 Aligned_cols=246 Identities=42% Similarity=0.762 Sum_probs=238.2
Q ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (429)
Q Consensus 178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (429)
+++.++.+.+...+.+.++..+|.++++++.++++++.+..| +.|+||+||++.|++.+|+..|-+|.+ +|+|||
T Consensus 3 ldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t-~YLFLG 77 (303)
T KOG0372|consen 3 LDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPET-NYLFLG 77 (303)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCC-ceEeec
Confidence 677888999999999999999999999999999999999988 999999999999999999998877766 599999
Q ss_pred ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCeEE
Q 014212 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
||||||..|+|++.+|+.||++||++|++||||||++.++..|||++||.+||+ ..+|+.+++.|+.||++|+|+++||
T Consensus 78 DyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kif 157 (303)
T KOG0372|consen 78 DYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIF 157 (303)
T ss_pred chhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEE
Confidence 999999999999999999999999999999999999999999999999999995 6899999999999999999999999
Q ss_pred EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeeccc
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEV 400 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~~ 400 (429)
|||||+ ||.++++++|+.++|.++.|+++.++|+|||||.+..||..|+||+|..| |+|+||.
T Consensus 158 CVHGGl-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQL 236 (303)
T KOG0372|consen 158 CVHGGL-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQL 236 (303)
T ss_pred EEcCCC-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 401 KDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 401 ~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
+++||++.|+++|+|||||||||++++|+
T Consensus 237 v~eGyk~~F~~~v~TVWSAPNYCYrCGN~ 265 (303)
T KOG0372|consen 237 VMEGYKWHFDEKVVTVWSAPNYCYRCGNV 265 (303)
T ss_pred HHhhHHHhcCCceEEEecCCchhhhcCCh
Confidence 99999999999999999999999999994
No 2
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-71 Score=460.73 Aligned_cols=246 Identities=39% Similarity=0.703 Sum_probs=238.1
Q ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 014212 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (429)
Q Consensus 177 ~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l 256 (429)
.++++++..++.+.+++.++..+|+..++++..+.+++-++.| +.|+|||||++.||+++|+..|-.|+. .|||+
T Consensus 5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~t-nYiFm 79 (306)
T KOG0373|consen 5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDT-NYIFM 79 (306)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCc-ceEEe
Confidence 4788999999999999999999999999999999999988877 999999999999999999999888766 49999
Q ss_pred cccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCeE
Q 014212 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 335 (429)
Q Consensus 257 GD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~ 335 (429)
|||||||..|+|++.+|+.||.+||.++.+||||||++.++..|||++||..||+ .+.|+.+.++|+.|+++|+|++++
T Consensus 80 GDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~v 159 (306)
T KOG0373|consen 80 GDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKV 159 (306)
T ss_pred ccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcE
Confidence 9999999999999999999999999999999999999999999999999999995 689999999999999999999999
Q ss_pred EEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeecc
Q 014212 336 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHE 399 (429)
Q Consensus 336 ~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~ 399 (429)
+|||||+ ||++.++++|+.+.|.++.|.++.+|||+||||.+.+.|..|+||+|+.| |.|+||
T Consensus 160 LCVHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQ 238 (306)
T KOG0373|consen 160 LCVHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQ 238 (306)
T ss_pred EEEcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999 899999
Q ss_pred ccccCceeecCCe-EEEEcCCCCCCCcCCC
Q 014212 400 VKDEGYEIEHDGK-LITVFSAPNYCDQVTK 428 (429)
Q Consensus 400 ~~~~g~~~~~~~~-~~t~fs~~~y~~~~~n 428 (429)
.+.+||++.|+.| ++|||||||||++++|
T Consensus 239 LV~EG~KymF~eK~lvTVWSAPNYCYRCGN 268 (306)
T KOG0373|consen 239 LVQEGFKYMFDEKGLVTVWSAPNYCYRCGN 268 (306)
T ss_pred HHHhhHHhccCCCCEEEEecCCchhhhccC
Confidence 9999999999998 9999999999999998
No 3
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=4.2e-68 Score=496.76 Aligned_cols=417 Identities=63% Similarity=1.074 Sum_probs=392.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+..+...|+.++..++|+.|+..|.+|++++|+.+..+.+++.++.+.+++..|+..+.+|++.+|+...+|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccc-ccccccc-cCCCCCCCcccC
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS-IDYQSIE-VEPQYSGARIEG 170 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~-~~~~~l~-~~~~~~~~~~~~ 170 (429)
..++++.+|...|++...+.|+.+.+...+.+|.....+.+|++|+........+.... ++..... +...+.+..+..
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~~~~i~~~y~g~~le~ 162 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEEDMDLIESDYSGPVLED 162 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999988999988766333332222 3333333 566778888877
Q ss_pred CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCC
Q 014212 171 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250 (429)
Q Consensus 171 ~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~ 250 (429)
..++++++..+++.+..+..++.+.+..++..+...+...|+.+++..+....+.++||.||++.++.++++..|.|+..
T Consensus 163 ~kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t 242 (476)
T KOG0376|consen 163 HKVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSET 242 (476)
T ss_pred chhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCc
Confidence 66999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccce
Q 014212 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV 330 (429)
Q Consensus 251 ~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 330 (429)
..|+|.||+||||..|.|++..++..|+.+|+++|++|||||+..|+..|||.+++..+|.++.+..+.++|..||++..
T Consensus 243 ~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~ 322 (476)
T KOG0376|consen 243 NPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHL 322 (476)
T ss_pred ccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------E
Q 014212 331 LNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------V 394 (429)
Q Consensus 331 ~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------i 394 (429)
|+++++.+|||+|+++..+++||++|.|+..|++++.+|++|||||....|.++|.||.|+.| |
T Consensus 323 i~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i 402 (476)
T KOG0376|consen 323 INNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNLDKI 402 (476)
T ss_pred hcCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred EeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 395 VRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 395 ir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||++.+.||++.|+|+|+|||||||||..++|+
T Consensus 403 ~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~ 437 (476)
T KOG0376|consen 403 IRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNK 437 (476)
T ss_pred hhccccCCCceeeecCCcEEEEecCcchhhhcCCc
Confidence 99999999999999999999999999999999995
No 4
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=5.7e-67 Score=486.38 Aligned_cols=266 Identities=71% Similarity=1.227 Sum_probs=252.5
Q ss_pred CCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHH
Q 014212 164 SGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL 243 (429)
Q Consensus 164 ~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~ 243 (429)
.++++....++.+.++.+++.+.+...++..++.++|.++.+++.++|+++++..|...+++|+||+||++.+|.++|+.
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 2 DGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 45666666689999999999999999999999999999999999999999999877667799999999999999999999
Q ss_pred cCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhc
Q 014212 244 NGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFC 323 (429)
Q Consensus 244 ~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (429)
.++++.+++|+|||||||||++|+||+.+++++|+.+|++|++||||||.+.++..|||..|+..+|+..+|+.+.++|+
T Consensus 82 ~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f~ 161 (316)
T cd07417 82 NGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFN 161 (316)
T ss_pred cCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHHH
Confidence 99988777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------
Q 014212 324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF---------- 393 (429)
Q Consensus 324 ~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~---------- 393 (429)
+||+++++++++||||||||++...++++|++++|+.+++.+++++|+|||||....++.+|+||.|+.|
T Consensus 162 ~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl~ 241 (316)
T cd07417 162 WLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLE 241 (316)
T ss_pred hchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHHH
Confidence 9999999999999999999777889999999999999999999999999999998889999999999988
Q ss_pred ------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 ------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 ------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||++.++++|+||||||||||.++|+
T Consensus 242 ~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ 283 (316)
T cd07417 242 ENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNK 283 (316)
T ss_pred HcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcc
Confidence 999999999999999999999999999999999985
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=7e-67 Score=483.90 Aligned_cols=255 Identities=44% Similarity=0.794 Sum_probs=233.7
Q ss_pred CCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCC
Q 014212 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252 (429)
Q Consensus 173 l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~ 252 (429)
++++.++.+++.+.+...+++.++..+|.+++++|.++|+++++..+...+++|+||+||++.+|.++|+..|+++..++
T Consensus 2 ~~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~ 81 (321)
T cd07420 2 LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENP 81 (321)
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccce
Confidence 57788999999999999999999999999999999999999999876566799999999999999999999998877678
Q ss_pred eEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc---hHHHHHHHHHhccCcccc
Q 014212 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS---ETFVELFAEVFCCLPLAH 329 (429)
Q Consensus 253 ~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lp~~~ 329 (429)
|+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..|+..+|+ ..+|+.+.++|++||++|
T Consensus 82 ~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaa 161 (321)
T cd07420 82 YVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLAT 161 (321)
T ss_pred EEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceE
Confidence 99999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred eecCeEEEEecCccCCCCCCccccccccCCC-----CCCC----------------------CCcccccccCCCCCCCC-
Q 014212 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPPE----------------------EGLMCELLWSDPQPLPG- 381 (429)
Q Consensus 330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~-----~~~~----------------------~~~~~~~lw~dp~~~~~- 381 (429)
+|++++||||||| ++ ..++++|+.++|+. .|+. .++++|+|||||....+
T Consensus 162 ii~~~i~cvHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~ 239 (321)
T cd07420 162 IIDNKILVVHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC 239 (321)
T ss_pred EEcCCEEEEeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCC
Confidence 9999999999999 54 57899999998852 1222 14688999999997766
Q ss_pred CCCCCCCCcEEE----------------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 382 RGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 382 ~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
+.+++||.|+.| ||||||++++||++.++++|+||||||||||.++|+
T Consensus 240 ~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ 303 (321)
T cd07420 240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNR 303 (321)
T ss_pred CccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCcc
Confidence 456789999988 999999999999999999999999999999998885
No 6
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=6.4e-64 Score=460.59 Aligned_cols=246 Identities=43% Similarity=0.783 Sum_probs=233.2
Q ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (429)
Q Consensus 178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (429)
++.+++.+.+...++.+++..+|+++.+++.++|.++++..+ +.++||+||++.+|.++|+..++++. +.|+|||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLG 76 (285)
T cd07415 2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLG 76 (285)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEe
Confidence 466788888888999999999999999999999999998765 99999999999999999999988765 4699999
Q ss_pred ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch-HHHHHHHHHhccCcccceecCeEE
Q 014212 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
||||||++|+||+.+++++|+.+|.++++||||||.+.++..|||..|+..+|+. .+|..+.++|+.||++|++++++|
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~ 156 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIF 156 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEE
Confidence 9999999999999999999999999999999999999999999999999999974 899999999999999999999999
Q ss_pred EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeeccc
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEV 400 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~~ 400 (429)
|||||| +|...++++|+.++||.+++.+++++|+|||||....++.+++||.|+.| ||||||+
T Consensus 157 cvHgGi-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~ 235 (285)
T cd07415 157 CVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQL 235 (285)
T ss_pred EEcCCC-CCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCcc
Confidence 999999 88999999999999999999999999999999998889999999999988 9999999
Q ss_pred cccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 401 KDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 401 ~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
+++||++.++++|+|||||||||+.++|+
T Consensus 236 ~~~G~~~~~~~~~~TvfSa~~y~~~~~n~ 264 (285)
T cd07415 236 VMEGYQWMFDDKLVTVWSAPNYCYRCGNV 264 (285)
T ss_pred ccceEEEecCCcEEEEecCCcccCCCCce
Confidence 99999999999999999999999998885
No 7
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=7.8e-64 Score=462.64 Aligned_cols=234 Identities=41% Similarity=0.829 Sum_probs=223.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (429)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~ 269 (429)
.+.++++..+|.++.+++.++|.++++..+ +.++||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus 31 ~l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~~-~ylfLGDyVDRG~~s~ev 105 (320)
T PTZ00480 31 NLTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPES-NYLFLGDYVDRGKQSLET 105 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCcc-eEEEeceecCCCCCcHHH
Confidence 578899999999999999999999998765 999999999999999999999988754 699999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (429)
Q Consensus 270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~ 349 (429)
+.+++++|+.+|++|++||||||.+.++..|||..|+..+|+..+|..++++|..||++|+|++++||||||| +|...+
T Consensus 106 l~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaAiI~~~i~cvHGGI-~p~~~~ 184 (320)
T PTZ00480 106 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGL-SPELSN 184 (320)
T ss_pred HHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhheecCcEEEEcCCc-CcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK 412 (429)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~ 412 (429)
+++|+.++||.+.+.+++++|+|||||... .+|.+++||.|+.| ||||||++++||++.++++
T Consensus 185 l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~ 264 (320)
T PTZ00480 185 LEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQ 264 (320)
T ss_pred HHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCc
Confidence 999999999999999999999999999864 68999999999988 9999999999999999999
Q ss_pred EEEEcCCCCCCCcCCCC
Q 014212 413 LITVFSAPNYCDQVTKL 429 (429)
Q Consensus 413 ~~t~fs~~~y~~~~~n~ 429 (429)
|+||||||||||.++|+
T Consensus 265 ~iTvFSa~~Y~~~~~N~ 281 (320)
T PTZ00480 265 LVTLFSAPNYCGEFDNA 281 (320)
T ss_pred EEEEeCCcccCCCCCcc
Confidence 99999999999998885
No 8
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2e-64 Score=467.90 Aligned_cols=232 Identities=43% Similarity=0.845 Sum_probs=224.0
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcC-CCCCCCCeEEccccccCCCCcHHH
Q 014212 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEV 269 (429)
Q Consensus 191 l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~ 269 (429)
+.+.++..++..+.+++..+|.+++++.| +.|+||+||++.+|+++|...| +|+.. +|+|||||||||++|+|+
T Consensus 32 l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~~-~ylFLGDYVDRG~~slE~ 106 (331)
T KOG0374|consen 32 LSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPDQ-NYVFLGDYVDRGKQSLET 106 (331)
T ss_pred ccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCcc-cEEEecccccCCccceEE
Confidence 67788999999999999999999999987 9999999999999999999999 88655 699999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCeEEEEecCccCCCCC
Q 014212 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 348 (429)
Q Consensus 270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~ 348 (429)
+.+|+++|+.||++|++||||||.+.++..|||++||.++|+ ..+|..|++.|.+||++++|+++|+|+|||| ||...
T Consensus 107 i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l~ 185 (331)
T KOG0374|consen 107 ICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHLK 185 (331)
T ss_pred eehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhhc
Confidence 999999999999999999999999999999999999999998 6999999999999999999999999999999 99999
Q ss_pred CccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCC
Q 014212 349 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDG 411 (429)
Q Consensus 349 ~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~ 411 (429)
++++|+.|.||.++++.++++|||||||... .||.++.||.++.| |||+||++.+||+++.++
T Consensus 186 ~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r 265 (331)
T KOG0374|consen 186 SLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGR 265 (331)
T ss_pred ChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecCc
Confidence 9999999999999999999999999999886 79999999999888 999999999999999999
Q ss_pred eEEEEcCCCCCCCcCCC
Q 014212 412 KLITVFSAPNYCDQVTK 428 (429)
Q Consensus 412 ~~~t~fs~~~y~~~~~n 428 (429)
+++||||||+|||.+.|
T Consensus 266 ~lvTIFSAP~Ycg~~~n 282 (331)
T KOG0374|consen 266 KLVTIFSAPNYCGEFDN 282 (331)
T ss_pred eEEEEecCchhccccCC
Confidence 99999999999999988
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=2.5e-63 Score=458.66 Aligned_cols=246 Identities=39% Similarity=0.710 Sum_probs=231.2
Q ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (429)
Q Consensus 178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (429)
++.+++.+.+...++++++..+|+++++++.++|.++++..+ +.|+||+||++.++.++|+..+.++. +.|+|||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~~-~~~lfLG 77 (303)
T PTZ00239 3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIPN-ANYIFIG 77 (303)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEee
Confidence 567788888888999999999999999999999999998765 99999999999999999999887764 4699999
Q ss_pred ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch-HHHHHHHHHhccCcccceecCeEE
Q 014212 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
||||||++|+||+.+++++|+.+|.++++||||||.+.++..|||..|+..+|+. .+|+.+.++|+.||+++++++++|
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~ 157 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQIL 157 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEE
Confidence 9999999999999999999999999999999999999999999999999999964 799999999999999999999999
Q ss_pred EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeeccc
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEV 400 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~~ 400 (429)
|||||| +|...++++|+.++||.+++.++.++|+|||||....++.+++||.|+.| ||||||+
T Consensus 158 cvHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~ 236 (303)
T PTZ00239 158 CVHGGL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL 236 (303)
T ss_pred EEcCcc-CcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChh
Confidence 999999 88999999999999999999999999999999998889999999999988 9999999
Q ss_pred cccCceeecCC-eEEEEcCCCCCCCcCCCC
Q 014212 401 KDEGYEIEHDG-KLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 401 ~~~g~~~~~~~-~~~t~fs~~~y~~~~~n~ 429 (429)
+++||++.+++ +|+|||||||||+.++|+
T Consensus 237 ~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~ 266 (303)
T PTZ00239 237 VMEGYKYWFPDQNLVTVWSAPNYCYRCGNI 266 (303)
T ss_pred hccceEEEeCCCeEEEEECCCcccCCCCce
Confidence 99999988755 599999999999999885
No 10
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.9e-64 Score=449.76 Aligned_cols=247 Identities=41% Similarity=0.774 Sum_probs=231.2
Q ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 014212 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (429)
Q Consensus 177 ~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l 256 (429)
..+-+.+++.+.++++++.+..++.++..+++++++++++..| +.|||||||++.||+++|+..|-| ...+|+||
T Consensus 47 ~~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~P-A~t~YLFL 121 (517)
T KOG0375|consen 47 RHDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSP-ANTRYLFL 121 (517)
T ss_pred chHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCc-ccceeEee
Confidence 3566788899999999999999999999999999999999988 999999999999999999987765 45569999
Q ss_pred cccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEE
Q 014212 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 257 GD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
|||||||.+|+||+.+|.+||+.+|+.+++||||||++-++.++.|..||..||++++|+.+.+.|++||+||+.++++|
T Consensus 122 GDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQfl 201 (517)
T KOG0375|consen 122 GDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFL 201 (517)
T ss_pred ccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCC-------C-CCCCCCCcEEE---------------
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------R-GPSKRGVGLSF--------------- 393 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~-------~-~~~~~~~~~~~--------------- 393 (429)
|||||+ ||.+.+++||++++|+++||..+.+||||||||.+.-| + .++.||+++.|
T Consensus 202 CVHGGl-SPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLL 280 (517)
T KOG0375|consen 202 CVHGGL-SPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLL 280 (517)
T ss_pred EecCCC-CcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCch
Confidence 999999 99999999999999999999999999999999986532 2 25689999887
Q ss_pred -EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212 394 -VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 -iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~ 429 (429)
|||+||.++.||+..-+. .+|||||||||.+.++||
T Consensus 281 SIiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNK 323 (517)
T KOG0375|consen 281 SIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK 323 (517)
T ss_pred hhhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccH
Confidence 999999999999987754 589999999999999996
No 11
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.5e-62 Score=452.27 Aligned_cols=234 Identities=41% Similarity=0.810 Sum_probs=222.5
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (429)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~ 269 (429)
.++..++..+|.++.+++.++|.++++..| +.|+||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus 24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~ev 98 (294)
T PTZ00244 24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPYS-NYLFLGDYVDRGKHSVET 98 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCcc-cEEEeeeEecCCCCHHHH
Confidence 467889999999999999999999999766 999999999999999999999987654 599999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (429)
Q Consensus 270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~ 349 (429)
+.+++++|+.+|.+++++|||||.+.++..|||..++..+|+..+|+.+.++|+.||+++++++++||||||| +|...+
T Consensus 99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~ 177 (294)
T PTZ00244 99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS 177 (294)
T ss_pred HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788899
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK 412 (429)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~ 412 (429)
+++|+.++||.+.+.+++++|+|||||... .+|.+++||.|+.| ||||||++++||+++++++
T Consensus 178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~ 257 (294)
T PTZ00244 178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQ 257 (294)
T ss_pred HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCe
Confidence 999999999999899999999999999864 68899999999988 9999999999999999999
Q ss_pred EEEEcCCCCCCCcCCCC
Q 014212 413 LITVFSAPNYCDQVTKL 429 (429)
Q Consensus 413 ~~t~fs~~~y~~~~~n~ 429 (429)
|+||||||||||.++|+
T Consensus 258 ~iTvfSa~~Y~~~~~N~ 274 (294)
T PTZ00244 258 LVTVFSAPNYCGEFDND 274 (294)
T ss_pred EEEEeCCccccCCCCce
Confidence 99999999999998885
No 12
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.6e-62 Score=453.05 Aligned_cols=234 Identities=42% Similarity=0.861 Sum_probs=222.8
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (429)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~ 269 (429)
.++++++..+|.++.+++.++|+++++..+ +.++||+||++.++.++|+..++++.. .|+|||||||||++|+||
T Consensus 22 ~~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~e~ 96 (293)
T cd07414 22 QLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPES-NYLFLGDYVDRGKQSLET 96 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCcc-eEEEEeeEecCCCCcHHH
Confidence 578899999999999999999999998765 999999999999999999999987654 699999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (429)
Q Consensus 270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~ 349 (429)
+.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|++||+++++++++||||||| +|...+
T Consensus 97 i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~ 175 (293)
T cd07414 97 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQS 175 (293)
T ss_pred HHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK 412 (429)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~ 412 (429)
+++|+.++||.+++.+++++|+|||||... .+|.+|+||.|+.| ||||||++++||++.++++
T Consensus 176 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~ 255 (293)
T cd07414 176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQ 255 (293)
T ss_pred HHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCc
Confidence 999999999999999999999999999864 68899999999988 9999999999999999999
Q ss_pred EEEEcCCCCCCCcCCCC
Q 014212 413 LITVFSAPNYCDQVTKL 429 (429)
Q Consensus 413 ~~t~fs~~~y~~~~~n~ 429 (429)
|+||||||||||.++|+
T Consensus 256 ~iTvfSa~~Y~~~~~N~ 272 (293)
T cd07414 256 LVTLFSAPNYCGEFDNA 272 (293)
T ss_pred EEEEecCCcccCCCCce
Confidence 99999999999998885
No 13
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=5e-62 Score=452.94 Aligned_cols=246 Identities=43% Similarity=0.801 Sum_probs=229.6
Q ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (429)
Q Consensus 178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (429)
++-+++.+.+...++++++.++|.++++++.++|.++++..+ +.|+||+||++.+|.++|+..+.++. +.|+|||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~~-~~ylFLG 77 (305)
T cd07416 3 IDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPAN-TRYLFLG 77 (305)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEEC
Confidence 456788888999999999999999999999999999999765 99999999999999999999887764 5699999
Q ss_pred ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEE
Q 014212 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (429)
Q Consensus 258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 337 (429)
||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+.++|..+.++|++||++++++++++|
T Consensus 78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~ 157 (305)
T cd07416 78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLC 157 (305)
T ss_pred CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCC-------CCCC-CCCCCcEEE----------------
Q 014212 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSF---------------- 393 (429)
Q Consensus 338 vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~-------~~~~-~~~~~~~~~---------------- 393 (429)
||||| +|...++++|++++|+.+++.+++++|+|||||.... +|.+ ++||.|+.|
T Consensus 158 vHGGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~ 236 (305)
T cd07416 158 VHGGL-SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLS 236 (305)
T ss_pred EcCCC-CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeE
Confidence 99999 8899999999999999999999999999999997643 3555 489999988
Q ss_pred EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212 394 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||++.+++ +||||||||||||.++|+
T Consensus 237 iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~ 278 (305)
T cd07416 237 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK 278 (305)
T ss_pred EEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCce
Confidence 999999999999999886 999999999999998885
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=2.3e-61 Score=452.80 Aligned_cols=257 Identities=40% Similarity=0.732 Sum_probs=231.9
Q ss_pred CCHHHHHHHHHHhhcc----------cCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHH
Q 014212 173 ITLDFVKKMMDDFKNQ----------KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 242 (429)
Q Consensus 173 l~~~~l~~li~~l~~~----------~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~ 242 (429)
++.+.++.|+..++.. ..++..++..+|.++.+++.++|+++++..+...+++|+||+||++.+|.++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~ 86 (377)
T cd07418 7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE 86 (377)
T ss_pred cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence 6889999999999766 346788999999999999999999999986555569999999999999999999
Q ss_pred HcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch---HHHHHHH
Q 014212 243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFA 319 (429)
Q Consensus 243 ~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 319 (429)
..++++.+..|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+. .+|+.+.
T Consensus 87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~ 166 (377)
T cd07418 87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL 166 (377)
T ss_pred HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence 9998876667999999999999999999999999999999999999999999999999999999999964 6999999
Q ss_pred HHhccCcccceecCeEEEEecCcc--------------------------CCCCCCccccccccCC-CCCCCCC---ccc
Q 014212 320 EVFCCLPLAHVLNQKVFVVHGGLF--------------------------SVDGVKLSDIKTIDRF-CEPPEEG---LMC 369 (429)
Q Consensus 320 ~~~~~lp~~~~~~~~~~~vH~gi~--------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~ 369 (429)
++|++||+++++++++|||||||| ++...++++|+.++|+ .+++.++ +++
T Consensus 167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~ 246 (377)
T cd07418 167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG 246 (377)
T ss_pred HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence 999999999999999999999994 2345789999999997 4676655 578
Q ss_pred ccccCCCCCCCCCCCC-CCCCcEEE----------------EEeeccc------------cccCceeecC---CeEEEEc
Q 014212 370 ELLWSDPQPLPGRGPS-KRGVGLSF----------------VVRSHEV------------KDEGYEIEHD---GKLITVF 417 (429)
Q Consensus 370 ~~lw~dp~~~~~~~~~-~~~~~~~~----------------iir~h~~------------~~~g~~~~~~---~~~~t~f 417 (429)
|||||||....|+.++ .||.|+.| ||||||+ +.+||++.++ ++|+|||
T Consensus 247 dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvF 326 (377)
T cd07418 247 DVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLF 326 (377)
T ss_pred eeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEe
Confidence 9999999988888775 79999988 9999996 6799999887 9999999
Q ss_pred CCCCCC------CcCCCC
Q 014212 418 SAPNYC------DQVTKL 429 (429)
Q Consensus 418 s~~~y~------~~~~n~ 429 (429)
|||||| +.++|+
T Consensus 327 Sa~nY~~~~~~~~~~~N~ 344 (377)
T cd07418 327 SAPDYPQFQATEERYNNK 344 (377)
T ss_pred cCCccccccccccccCcc
Confidence 999999 567775
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-63 Score=421.23 Aligned_cols=247 Identities=40% Similarity=0.710 Sum_probs=236.2
Q ss_pred HHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEE
Q 014212 176 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF 255 (429)
Q Consensus 176 ~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~ 255 (429)
..++..++.+...+.+.+..+..+|..++++|.++.++..+..| +.++||+||+|.+|+++|+..|..|+. .|+|
T Consensus 18 ~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdt-nylf 92 (319)
T KOG0371|consen 18 LDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDT-NYLF 92 (319)
T ss_pred cccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCc-ceee
Confidence 34677888888999999999999999999999999999998877 999999999999999999888877766 5999
Q ss_pred ccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc-chHHHHHHHHHhccCcccceecCe
Q 014212 256 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL-SETFVELFAEVFCCLPLAHVLNQK 334 (429)
Q Consensus 256 lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~ 334 (429)
+|||||||++|+|++.+|.++|++||++|.+||||||++.++..|||++||.||| ...+|..|.+.|+.+|+++.|+++
T Consensus 93 mGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ 172 (319)
T KOG0371|consen 93 MGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESK 172 (319)
T ss_pred eeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999 568999999999999999999999
Q ss_pred EEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeec
Q 014212 335 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSH 398 (429)
Q Consensus 335 ~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h 398 (429)
|||.|||+ ||.+.+++.++.++|.++.|.++.+||||||||.+..||+.++||.|..| |.|+|
T Consensus 173 ifc~HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRah 251 (319)
T KOG0371|consen 173 IFCLHGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAH 251 (319)
T ss_pred eeeccCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999988 89999
Q ss_pred cccccCceeecCCeEEEEcCCCCCCCcCCC
Q 014212 399 EVKDEGYEIEHDGKLITVFSAPNYCDQVTK 428 (429)
Q Consensus 399 ~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n 428 (429)
|.+++||.|.+...++|||||||||++++|
T Consensus 252 qlvm~g~nW~~~~~~vtiFSapnycYrcgn 281 (319)
T KOG0371|consen 252 QLVMEGYNWYHLWNVVTIFSAPNYCYRCGN 281 (319)
T ss_pred HHHhcccceeeecceeEEccCCchhhcccc
Confidence 999999999999999999999999999998
No 16
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=3.6e-61 Score=441.45 Aligned_cols=232 Identities=50% Similarity=0.917 Sum_probs=219.8
Q ss_pred cHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHH
Q 014212 192 HKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL 271 (429)
Q Consensus 192 ~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~ 271 (429)
+++++..+|+++.+++.++|+++++..+ +.|+||+||++.++.++|+..+.++ .+.|+|||||||||++|+||+.
T Consensus 2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~ 76 (271)
T smart00156 2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL 76 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence 4678999999999999999999999755 9999999999999999999998765 4569999999999999999999
Q ss_pred HHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCCcc
Q 014212 272 TLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLS 351 (429)
Q Consensus 272 ~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~ 351 (429)
+++++|+.+|.++++||||||.+.++..|||..|+..+|+.++|+.+.++|++||+++++++++||||||| +|...+++
T Consensus 77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~ 155 (271)
T smart00156 77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD 155 (271)
T ss_pred HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88899999
Q ss_pred ccccccCCCCCCCCCcccccccCCCCC-CCCCCCCCCCCcEEE----------------EEeeccccccCceeecCCeEE
Q 014212 352 DIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLI 414 (429)
Q Consensus 352 ~i~~~~r~~~~~~~~~~~~~lw~dp~~-~~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~~~ 414 (429)
+|+.++||.+++.+++++|+|||||.. ..++.+|+||.|+.| ||||||++++||++.++++|+
T Consensus 156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 235 (271)
T smart00156 156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV 235 (271)
T ss_pred HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence 999999999999999999999999964 578899999999988 999999999999999999999
Q ss_pred EEcCCCCCCCcCCCC
Q 014212 415 TVFSAPNYCDQVTKL 429 (429)
Q Consensus 415 t~fs~~~y~~~~~n~ 429 (429)
|||||||||+.++|+
T Consensus 236 TvfSa~~y~~~~~n~ 250 (271)
T smart00156 236 TIFSAPNYCGRFGNK 250 (271)
T ss_pred EEECCcccccCCCce
Confidence 999999999998885
No 17
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.9e-58 Score=431.22 Aligned_cols=235 Identities=36% Similarity=0.655 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC-------CCCeEEccccccC
Q 014212 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE-------ENPYLFNGDFVDR 262 (429)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~-------~~~~~~lGD~vdr 262 (429)
.++++++..+|+++.++++++|.++++..+ +.++||+||++.+|.++|+..++++. +..||||||||||
T Consensus 20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR 95 (311)
T cd07419 20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR 95 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence 466788999999999999999999999765 99999999999999999999988754 2469999999999
Q ss_pred CCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch------HHHHHHHHHhccCcccceecCeEE
Q 014212 263 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE------TFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 263 G~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
||+|+||+.+|+++|+.+|++|++||||||.+.++..|||..++..+++. .+|..++++|++||++++++++++
T Consensus 96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l 175 (311)
T cd07419 96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL 175 (311)
T ss_pred CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence 99999999999999999999999999999999999999999999888864 699999999999999999999999
Q ss_pred EEecCccCCCCCCccccccccCCC-CCCCCCcccccccCCCCCC---CCCCCCC---CCCc--EEE--------------
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFC-EPPEEGLMCELLWSDPQPL---PGRGPSK---RGVG--LSF-------------- 393 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~-~~~~~~~~~~~lw~dp~~~---~~~~~~~---~~~~--~~~-------------- 393 (429)
|||||| +|...++++|+.+.||. +++.+++++|+|||||... .++.+++ ||.| +.|
T Consensus 176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l 254 (311)
T cd07419 176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL 254 (311)
T ss_pred EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence 999999 88999999999999996 5667889999999999864 3666666 9999 466
Q ss_pred --EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 --VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 --iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||++.++++|+|||||||||+.++|+
T Consensus 255 ~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ 292 (311)
T cd07419 255 QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNA 292 (311)
T ss_pred eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCce
Confidence 999999999999999999999999999999998884
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-58 Score=421.89 Aligned_cols=272 Identities=40% Similarity=0.747 Sum_probs=250.8
Q ss_pred cccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCH
Q 014212 155 QSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 234 (429)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~ 234 (429)
..+++...|.++.+... ++...++.+++.|+....++++++..++.++++.|+..|++..++......+.||||+||.+
T Consensus 99 ~sidv~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGkl 177 (631)
T KOG0377|consen 99 TSIDVPDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKL 177 (631)
T ss_pred cceecCccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccc
Confidence 46777778888988886 88899999999999999999999999999999999999999999888788899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc---c
Q 014212 235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL---S 311 (429)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~---~ 311 (429)
+||.-+|-++|+|+..++|||.||+||||.+|+|||..|+++-+.+|..+|+.|||||...||-.|||..|+..|| +
T Consensus 178 DDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~ 257 (631)
T KOG0377|consen 178 DDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHG 257 (631)
T ss_pred cceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred hHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCCccccccccCC-----CCCCC-----------------CCccc
Q 014212 312 ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRF-----CEPPE-----------------EGLMC 369 (429)
Q Consensus 312 ~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~-----~~~~~-----------------~~~~~ 369 (429)
..+.+.+.++|++||++.+|+.+||+||||| | +.++++-+.+|+|. ..||. ...+.
T Consensus 258 k~Ilr~leevy~WLPi~tiid~~ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~ 335 (631)
T KOG0377|consen 258 KRILRFLEEVYRWLPIGTIIDSRILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIF 335 (631)
T ss_pred cHHHHHHHHHHHhcchhhhcccceEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHH
Confidence 7899999999999999999999999999999 5 56788888888775 12322 23577
Q ss_pred ccccCCCCCCCCCCCC-CCCCcEEE----------------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 370 ELLWSDPQPLPGRGPS-KRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 370 ~~lw~dp~~~~~~~~~-~~~~~~~~----------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
|++||||....|..|+ -||.|++| +||||||.++||+++||++|+|||||+||....+|+
T Consensus 336 DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNr 412 (631)
T KOG0377|consen 336 DIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNR 412 (631)
T ss_pred HHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCC
Confidence 9999999999998887 49999999 999999999999999999999999999999998885
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.98 E-value=5.4e-32 Score=245.40 Aligned_cols=195 Identities=48% Similarity=0.743 Sum_probs=154.2
Q ss_pred EEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchh
Q 014212 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304 (429)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~ 304 (429)
+++||+||++++|.++++..+.++ .+.+||+||+||||+.|.+|+.+++.++.. |.++++|+||||.+.++...++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~-~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~ 78 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPP-NDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD 78 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCC-CCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence 479999999999999999988754 557999999999999999999999999877 899999999999998887766554
Q ss_pred hh---------hcccchHHHHHHHHHhccCcccceecC-eEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccC
Q 014212 305 EV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS 374 (429)
Q Consensus 305 ~~---------~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~ 374 (429)
+. .......++..+.++|..||+++.++. +++|||||+ +|.......+. ..+.+....+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~ 151 (225)
T cd00144 79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS 151 (225)
T ss_pred hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence 32 222345678888999999999999987 999999999 55543333222 23345678899999
Q ss_pred CCCCCCCCC-CCCC------------CCcEEEEEeeccccccCceeecCCeEEEEcCCCCCCCcCCC
Q 014212 375 DPQPLPGRG-PSKR------------GVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTK 428 (429)
Q Consensus 375 dp~~~~~~~-~~~~------------~~~~~~iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n 428 (429)
+|....... .+.+ ..+...|||||+++..|+....+++++||+|++.|++..+|
T Consensus 152 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~ 218 (225)
T cd00144 152 DPLELPGGFGSSRRGGGPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGN 218 (225)
T ss_pred CCCCCCCCCcCCCCCCCHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCc
Confidence 997544322 2222 23445599999999999877788999999999999866555
No 20
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.93 E-value=2.8e-25 Score=202.44 Aligned_cols=121 Identities=26% Similarity=0.476 Sum_probs=95.3
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCC--------CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLP--------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~--------~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++.||||||||++.|.++|++.++. +..+++||+||||||||+|.+||.+++++. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 4899999999999999999998764 345679999999999999999999999885 456899999999988
Q ss_pred cchhhccch-------hhhhccc-------chHHHHHHHHHhccCcccceec-CeEEEEecCccCCC
Q 014212 295 SMNKIYGFE-------GEVRSKL-------SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVD 346 (429)
Q Consensus 295 ~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~ 346 (429)
.++...+-. .+....+ ...+.+.+.+||++||++..++ ++++|||||+ .|.
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~-~~~ 145 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI-RQD 145 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC-ChH
Confidence 776543210 0111111 1346778899999999998774 6899999999 443
No 21
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.90 E-value=1.4e-23 Score=188.15 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=89.7
Q ss_pred eEEEccCCCCHHHHHHHHHHcCCC-------CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGLP-------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~-------~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
+++|||||||++.|.++|++.++. +..+.+|||||||||||+|.+||.++++++. +.++++|+||||.+.+
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll 78 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAI 78 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHH
Confidence 378999999999999999998764 2346899999999999999999999999863 4578999999999877
Q ss_pred hhhccc--hhhhh---------------ccc--chHHHHHHHHHhccCcccceecCeEEEEecCc
Q 014212 297 NKIYGF--EGEVR---------------SKL--SETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342 (429)
Q Consensus 297 ~~~~~~--~~~~~---------------~~~--~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi 342 (429)
....+- ...+. ..+ ..+..+...+||+.||+.... ++++|||||+
T Consensus 79 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~ 142 (222)
T cd07413 79 AWHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDL-GGVRVVHACW 142 (222)
T ss_pred HhhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEE-CCEEEEECCc
Confidence 543221 00111 111 123456788999999999876 4799999998
No 22
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.90 E-value=7.8e-24 Score=187.76 Aligned_cols=166 Identities=20% Similarity=0.301 Sum_probs=117.6
Q ss_pred EEEccCCCCHHHHHHHHHHcCC-------CCCCCCeEEccccccCCCCcHHHHHHHHHhhhh---CCCeEEEecCCcccc
Q 014212 225 TVCGDVHGQFYDLLNIFELNGL-------PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---CPSAIYLSRGNHESK 294 (429)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~~~-------~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~---~p~~~~~lrGNhe~~ 294 (429)
+++||+||+++.|.++|+..+. ....+.++++||+|||||++.+|+.+|++|+.. .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4799999999999999998764 234568999999999999999999999999743 467899999999999
Q ss_pred cchhhccchhh-hhcccc------hHH---HHHHHHHhccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCC
Q 014212 295 SMNKIYGFEGE-VRSKLS------ETF---VELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364 (429)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~------~~~---~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~ 364 (429)
.+...+.+... ...... ..+ ...+.+|++.+|+...++ +++|||||+ +|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~~------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-GP------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-HH-------------------
Confidence 88754332211 110000 011 124478999999998877 588899998 32
Q ss_pred CCcccccccCCC----CCCC--C---CCCCCCCCcEEEEEeeccccccCceeecCCeEEEEcC
Q 014212 365 EGLMCELLWSDP----QPLP--G---RGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFS 418 (429)
Q Consensus 365 ~~~~~~~lw~dp----~~~~--~---~~~~~~~~~~~~iir~h~~~~~g~~~~~~~~~~t~fs 418 (429)
+|++. .... + ....-+..+...||+||+.++.|....++|+|++|-+
T Consensus 140 -------~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~ 195 (208)
T cd07425 140 -------LWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDV 195 (208)
T ss_pred -------HHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeC
Confidence 22211 0000 0 0011111233459999999998886789999999986
No 23
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.90 E-value=5.9e-23 Score=186.35 Aligned_cols=118 Identities=36% Similarity=0.544 Sum_probs=94.2
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCC---------CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPS---------EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~---------~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
++.++||||||+..|..+|++.++.+ ..+.+|||||||||||+|.||+.+|++++. +.++++|+||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcHH
Confidence 48999999999999999999987653 246799999999999999999999999874 3568899999999
Q ss_pred ccchhhcc--------chhhhhccc---chHHHHHHHHHhccCcccceec-CeEEEEecCcc
Q 014212 294 KSMNKIYG--------FEGEVRSKL---SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLF 343 (429)
Q Consensus 294 ~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~ 343 (429)
+.++...+ +. +....+ ...+.+...+||+.||+...++ ++++|||||+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~ 140 (234)
T cd07423 80 KLYRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK 140 (234)
T ss_pred HHHHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence 88765432 21 111222 2346677889999999988775 57999999984
No 24
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.90 E-value=5.4e-24 Score=192.99 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=95.9
Q ss_pred eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccch
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~ 303 (429)
+++||||||+++.|.++|++.++.+..+.++|+||+|||||+|+||+.++++++ .++++|+||||.+.+...+|+.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 479999999999999999999887777889999999999999999999999986 5788999999999888766643
Q ss_pred hhhhc----c-cchHHHHHHHHHhccCcccceecC-eEEEEecCccCCC
Q 014212 304 GEVRS----K-LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVD 346 (429)
Q Consensus 304 ~~~~~----~-~~~~~~~~~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~ 346 (429)
..... . ......+...+|++++|+...+++ ++++||||| +|.
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~ 124 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQ 124 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCC
Confidence 21110 0 111223567899999999998875 899999999 554
No 25
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.90 E-value=6.3e-23 Score=183.87 Aligned_cols=170 Identities=19% Similarity=0.238 Sum_probs=114.9
Q ss_pred eecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 215 ~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
.+..+...+++++|||||+++.|.++|+..++.+..+.++|+||+|||||+|.+||.+|... +++.|+||||.+
T Consensus 10 ~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~ 83 (218)
T PRK11439 10 RIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQM 83 (218)
T ss_pred cccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHH
Confidence 34444445799999999999999999999987766678999999999999999999999652 467899999998
Q ss_pred cchhhccch--------hhhhccc---chHHHHHHHHHhccCccccee---cCeEEEEecCccCCCCCCccccccccCCC
Q 014212 295 SMNKIYGFE--------GEVRSKL---SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360 (429)
Q Consensus 295 ~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~~~~~~~~i~~~~r~~ 360 (429)
.++...+-. .++.... ..+......+|++.||+...+ ++++++||||+|.+.. ....+
T Consensus 84 ~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~-------~~~~~- 155 (218)
T PRK11439 84 ALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVY-------EWQKD- 155 (218)
T ss_pred HHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCch-------hhhcc-
Confidence 886432210 1111111 123455667999999998765 3579999999843210 11100
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCC-cEEEEEeeccccccCc
Q 014212 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGV-GLSFVVRSHEVKDEGY 405 (429)
Q Consensus 361 ~~~~~~~~~~~lw~dp~~~~~~~~~~~~~-~~~~iir~h~~~~~g~ 405 (429)
....+++|+++....... .++. |..+||-||+++....
T Consensus 156 -----~~~~~~~w~r~~~~~~~~--~~~~~~~~~vv~GHT~~~~~~ 194 (218)
T PRK11439 156 -----VDLHQVLWSRSRLGERQK--GQGITGADHFWFGHTPLRHRV 194 (218)
T ss_pred -----CCccceEEcChhhhhccc--cccccCCCEEEECCccCCCcc
Confidence 023457998764322111 1222 4446899999876543
No 26
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.89 E-value=2.6e-23 Score=188.11 Aligned_cols=119 Identities=22% Similarity=0.344 Sum_probs=97.3
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~ 302 (429)
.+++|||||||++.|.++|++.++.+..+.++|+||+|||||+|+||+.++.+++ +++++|+||||.+.+...+|+
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~ 77 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI 77 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence 3899999999999999999999987777889999999999999999999998874 567789999999999887775
Q ss_pred hh-----hhhcccchHHHHHHHHHhccCcccceec-CeEEEEecCccCCC
Q 014212 303 EG-----EVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVD 346 (429)
Q Consensus 303 ~~-----~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~ 346 (429)
.. ....-+.....+.+.+|++.+|+....+ .++++||||| +|.
T Consensus 78 ~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~ 126 (279)
T TIGR00668 78 SRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQ 126 (279)
T ss_pred CccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCC
Confidence 31 1111112334567789999999987654 4799999999 554
No 27
>PHA02239 putative protein phosphatase
Probab=99.88 E-value=2.6e-22 Score=180.45 Aligned_cols=158 Identities=25% Similarity=0.299 Sum_probs=111.1
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCC-CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhcc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~-~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~ 301 (429)
+++++||+||+++.|.++++...... +.+.+||+|||||||++|.+|+..++.+.. .+..+++|+||||.+.+....+
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~~ 80 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIMEN 80 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHhC
Confidence 47999999999999999998874321 245799999999999999999999999754 4567888999999886543211
Q ss_pred c-----h-hhhh--------cccc-------------------------------hHHHHHHHHHhccCcccceecCeEE
Q 014212 302 F-----E-GEVR--------SKLS-------------------------------ETFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 302 ~-----~-~~~~--------~~~~-------------------------------~~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
. . .+|. ..|+ ...+..+.+|++.||+....+ +++
T Consensus 81 ~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~i 159 (235)
T PHA02239 81 VDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KYI 159 (235)
T ss_pred chhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CEE
Confidence 0 0 0122 1221 112345567999999998865 799
Q ss_pred EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEEEEeeccccccCc
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGY 405 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~iir~h~~~~~g~ 405 (429)
|||||+ .|. .+.++....+++|.++ . +++..|. +||.||+++.++.
T Consensus 160 fVHAGi-~p~--------------~~~~~q~~~~llWiR~-f------~~~~~g~-~vV~GHTp~~~~~ 205 (235)
T PHA02239 160 FSHSGG-VSW--------------KPVEEQTIDQLIWSRD-F------QPRKDGF-TYVCGHTPTDSGE 205 (235)
T ss_pred EEeCCC-CCC--------------CChhhCCHhHeEEecc-c------CCCCCCc-EEEECCCCCCCCc
Confidence 999999 332 1222334578999996 2 2222343 4999999987654
No 28
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.88 E-value=2.6e-22 Score=178.85 Aligned_cols=169 Identities=24% Similarity=0.292 Sum_probs=117.1
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~ 302 (429)
+++++||+||++..|.++++..++.+..+.++|+||+|||||++.||+.+|.. ..+++++||||.+.+....+-
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhCC
Confidence 58999999999999999999887655567799999999999999999999865 357889999999988765431
Q ss_pred --hhhh-hcc-------c-chHHHHHHHHHhccCcccceec---CeEEEEecCccCCCCCCccccccccCCCCCCCCCcc
Q 014212 303 --EGEV-RSK-------L-SETFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368 (429)
Q Consensus 303 --~~~~-~~~-------~-~~~~~~~~~~~~~~lp~~~~~~---~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~ 368 (429)
..+. ... . ...+.+...+||+.||+...++ +++++||||+|+.....+ + .+ ++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~--~---~~--~~~~~~~~ 148 (207)
T cd07424 76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDG--V---GA--VTLRPEDI 148 (207)
T ss_pred CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhh--h---hc--cccCcccc
Confidence 1111 111 1 1225666888999999998774 479999999843221110 0 00 22334456
Q ss_pred cccccCCCCCCCCCCCCCCCCcEEEEEeeccccccCce
Q 014212 369 CELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYE 406 (429)
Q Consensus 369 ~~~lw~dp~~~~~~~~~~~~~~~~~iir~h~~~~~g~~ 406 (429)
.+++|++|......... ..|..+||-||+.+...+.
T Consensus 149 ~~~~w~~~~~~~~~~~~--~~~~~~iV~GHTh~~~~~~ 184 (207)
T cd07424 149 EELLWSRTRIQKAQTQP--IKGVDAVVHGHTPVKRPLR 184 (207)
T ss_pred eeeeeccchhhhcCccc--cCCCCEEEECCCCCCcceE
Confidence 77999987543322111 1233458999998765544
No 29
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.88 E-value=2.9e-22 Score=181.01 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=63.7
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCC-----CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCC-eEEEecCCcccccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLP-----SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS-AIYLSRGNHESKSM 296 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~-----~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~-~~~~lrGNhe~~~~ 296 (429)
.++++|||||+++.|..+++..... +..+.+|||||||||||+|.+|+.+|++++..+|. .+++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 4899999999999999998865321 22446999999999999999999999999988875 67889999997765
Q ss_pred hh
Q 014212 297 NK 298 (429)
Q Consensus 297 ~~ 298 (429)
..
T Consensus 83 ~f 84 (304)
T cd07421 83 AF 84 (304)
T ss_pred hH
Confidence 43
No 30
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.87 E-value=2.7e-22 Score=183.94 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=95.6
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~ 302 (429)
++++||||||+++.|.+++++.++.+..+.++|+||+|||||+|.+|+.+++++ +.++++|+||||.+++...+|+
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~ 77 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGI 77 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCC
Confidence 389999999999999999999887666678999999999999999999999887 3578899999999988777665
Q ss_pred hhh----hhccc-chHHHHHHHHHhccCccccee-cCeEEEEecCccCCC
Q 014212 303 EGE----VRSKL-SETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVD 346 (429)
Q Consensus 303 ~~~----~~~~~-~~~~~~~~~~~~~~lp~~~~~-~~~~~~vH~gi~~~~ 346 (429)
... ....+ .....+...+|++.+|+...+ ++++++||||+ +|.
T Consensus 78 ~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~ 126 (275)
T PRK00166 78 KRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQ 126 (275)
T ss_pred ccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCC
Confidence 321 11111 112345578999999998876 56899999999 454
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.85 E-value=1.2e-20 Score=168.78 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=111.5
Q ss_pred eecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 215 ~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
.+..+...++.++||+||+++.|.++++...+.+..+.++|+||+|||||+|.+|+.++.. .+++.||||||.+
T Consensus 8 ~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~ 81 (218)
T PRK09968 8 KINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAM 81 (218)
T ss_pred eccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHH
Confidence 4444445679999999999999999999987666667899999999999999999999853 3578899999998
Q ss_pred cchhhcc--c------hhhhhcccch---HHHHHHHHHhccCcccceec---CeEEEEecCccCCCCCCccccccccCCC
Q 014212 295 SMNKIYG--F------EGEVRSKLSE---TFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFC 360 (429)
Q Consensus 295 ~~~~~~~--~------~~~~~~~~~~---~~~~~~~~~~~~lp~~~~~~---~~~~~vH~gi~~~~~~~~~~i~~~~r~~ 360 (429)
.+....+ . ..++...... .......+|++.||+...+. +++++||||+|.+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~---~~~------- 151 (218)
T PRK09968 82 ALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEY---DFG------- 151 (218)
T ss_pred HHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchh---hhc-------
Confidence 8764311 0 0122222221 23334467999999998663 479999999843210 000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCC-CCCCcEEEEEeeccccc
Q 014212 361 EPPEEGLMCELLWSDPQPLPGRGPS-KRGVGLSFVVRSHEVKD 402 (429)
Q Consensus 361 ~~~~~~~~~~~lw~dp~~~~~~~~~-~~~~~~~~iir~h~~~~ 402 (429)
......+++|+++.....+... .+..+..+||-||+...
T Consensus 152 ---~~~~~~~~~w~r~~~~~~~~~~~~~~~~~~~vv~GHTh~~ 191 (218)
T PRK09968 152 ---KEIAESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFD 191 (218)
T ss_pred ---cccchhhceeCcHHHhhCccccccccCCCCEEEECCCCcC
Confidence 0011345689854332222111 11234456999999764
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=4.5e-19 Score=170.41 Aligned_cols=174 Identities=21% Similarity=0.274 Sum_probs=142.1
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+-.-+|.-+++++++|++|-..+.|++|+..|.+|+.+.|+.+.++-++|.+|+.+|+.+-|+++|++|++++|.++++|
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 34567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
+++|.++...|+..||+.+|.+|+.+.|+++++..+++.++..+++ +++|..+|. +++++.|.+..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--~e~A~~ly~------------~al~v~p~~aa 389 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--IEEATRLYL------------KALEVFPEFAA 389 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc--chHHHHHHH------------HHHhhChhhhh
Confidence 9999999999999999999999999999999999999998888876 666666666 88888888888
Q ss_pred CcccCCCCC--HHHHHHHHHHhhcccCCcH
Q 014212 166 ARIEGDVIT--LDFVKKMMDDFKNQKCLHK 193 (429)
Q Consensus 166 ~~~~~~~l~--~~~l~~li~~l~~~~~l~~ 193 (429)
+.-+.+.+. .+.+++.+..++...++.+
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 766554322 2345566666555554444
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=147.97 Aligned_cols=123 Identities=41% Similarity=0.694 Sum_probs=117.5
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
++...++.+...|+.+++.++|++|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.|+.+||.+.++|.+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
|.+|+.+|++++|++.|++||+++|++...+.+|..+...++.
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999887766654
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-17 Score=159.40 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=123.9
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
....|..+.++-++|.+|+.+|+.+-|+..|++|++++|+.+.++.++|.++...|+..+|+.+|.+|+.+.|..+++.+
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 45578888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
+||.+|.++|++++|...|.++++..|+...+..+++.++.+.|+ +++|+..|. +++.+.|.+..+
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn--l~~Ai~~Yk------------ealrI~P~fAda 424 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN--LDDAIMCYK------------EALRIKPTFADA 424 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--HHHHHHHHH------------HHHhcCchHHHH
Confidence 999999999999999999999999999999999999988888887 566665554 555555555544
Q ss_pred ccc
Q 014212 167 RIE 169 (429)
Q Consensus 167 ~~~ 169 (429)
..+
T Consensus 425 ~~N 427 (966)
T KOG4626|consen 425 LSN 427 (966)
T ss_pred HHh
Confidence 333
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=8.7e-16 Score=128.53 Aligned_cols=115 Identities=22% Similarity=0.202 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (429)
.++.+|..+...|++++|+..|++++..+|.+..+|.++|.++..+|++++|+..|++++.++|+++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
|++++|+..|++++++.|+++..+..++.+...+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.6e-16 Score=152.50 Aligned_cols=151 Identities=23% Similarity=0.327 Sum_probs=140.6
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
....+|..++.|..+|++|--+++++.|++.|++|++++|.++.+|..+|.-+....+++.|..+|++|+..+|.+..||
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
|.+|.+|.++++++.|.-+|++|++++|.+......++..+.++++ .++|+.+++ +++.++|....
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~AL~~~~------------~A~~ld~kn~l 558 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDKALQLYE------------KAIHLDPKNPL 558 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhHHHHHHH------------HHHhcCCCCch
Confidence 9999999999999999999999999999999999999999999998 678888888 88888887655
Q ss_pred CcccC
Q 014212 166 ARIEG 170 (429)
Q Consensus 166 ~~~~~ 170 (429)
..+..
T Consensus 559 ~~~~~ 563 (638)
T KOG1126|consen 559 CKYHR 563 (638)
T ss_pred hHHHH
Confidence 54433
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.60 E-value=8.1e-14 Score=114.88 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=105.1
Q ss_pred ccc-HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 8 NSS-VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 8 ~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
+.+ +++.+..+.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+.+|.+|+.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
++|.|+...|+.+.|.+.|+.|+....++++-
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 99999999999999999999999998555443
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.58 E-value=5.9e-14 Score=120.89 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=130.9
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.....+.+...+|.-|+.+|++..|...+++|++.+|++..+|..+|.+|...|+.+.|-+.|++|+.++|++.+++.+.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKL--SPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
|.-++.+|++++|...|++|+.. .|..+..+.+++.|..+.|+ +..|..++. ++++.+|.+..+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~------------raL~~dp~~~~~ 175 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLK------------RALELDPQFPPA 175 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHH------------HHHHhCcCCChH
Confidence 99999999999999999999984 24556789999999888776 455555544 899999988777
Q ss_pred cccC
Q 014212 167 RIEG 170 (429)
Q Consensus 167 ~~~~ 170 (429)
.+..
T Consensus 176 ~l~~ 179 (250)
T COG3063 176 LLEL 179 (250)
T ss_pred HHHH
Confidence 6554
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=1.3e-13 Score=114.18 Aligned_cols=120 Identities=23% Similarity=0.407 Sum_probs=112.3
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
...+|+++.+.+.+|..++..|++++|+..++++++.+|.++.++..+|.++..+|++++|+..+++++..+|+++..++
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
.+|.++...|++++|+..|+++++++|++.........+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999999999999999999999999988665554443
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.57 E-value=5.2e-14 Score=146.31 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=121.3
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|..+.++..+|..++..|++++|+..|+++++++|.+..+|..+|.++..+|++++|+..|+++++.+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC----------------------cccccc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP----------------------ESERHS 147 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~----------------------~~~~~~ 147 (429)
.++..+|++++|+.+|+++++++|++..++..++.++..+++ +++|+..+ ..+++.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 888888888888888888888888888888888888877776 33433332 234556
Q ss_pred ccccccccccccCCCCCC
Q 014212 148 VADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 148 ~a~~~~~~~l~~~~~~~~ 165 (429)
+|...+.+++++.|....
T Consensus 485 ~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHHHHHHhcCCcccc
Confidence 666666677777776433
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.56 E-value=1.9e-14 Score=149.59 Aligned_cols=132 Identities=23% Similarity=0.290 Sum_probs=105.2
Q ss_pred ccHhHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 9 SSVSRAEELKALANEAF---RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
.++.....+..++..+. ..++|++|++.|+++++. .|..+.++..+|.++..+|++++|+..+++++.++|++.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35555555666665543 347888888888888876 467777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+|+.+|.++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 423 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQ 423 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888777 677777666
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.54 E-value=2e-13 Score=131.55 Aligned_cols=116 Identities=37% Similarity=0.663 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (429)
.+...|..++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|+..+++++.++|+++.+|+++|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
|++++|+..|+++++++|+++.+...++.+...+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888777643
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=4.7e-13 Score=126.08 Aligned_cols=108 Identities=24% Similarity=0.262 Sum_probs=104.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.+..+..++.+|..+...|++++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|++..+|+++|
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34558889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
.++...|++++|++.|+++++++|+++.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999984
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=6.8e-14 Score=117.06 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (429)
Q Consensus 34 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 113 (429)
...|+++++++|++ +..+|.++.+.|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999985 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212 114 NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (429)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (429)
+++.+++.+|.++..+|+ +++|+..++ ++++..|......
T Consensus 90 ~~~~a~~~lg~~l~~~g~--~~eAi~~~~------------~Al~~~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE--PGLAREAFQ------------TAIKMSYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHHH
Confidence 999999999999999988 778887777 8888888765543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.8e-13 Score=128.44 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
+...-.|+.|.-.++.++|+.+|++|++++|....+|..+|.-|+.+++...|++.|++|+.++|.+-.+|+.||++|..
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 34456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++...=|+-+|++|+++.|+++..|..+|.|+..+++ .++|+..+.
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCyk 456 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYK 456 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999999999999999999999999999999887 677777666
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=9.1e-13 Score=116.22 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=74.1
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhC--HHHHHHHHHHHHHhCCCChHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEE--YGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~ 85 (429)
.+|++++.|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|+++.++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 35666667777777777777777777777777777777777777777654 45555 4677777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
+.+|.++..+|++++|+.++++++++.|.+.+
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 77777777777777777777777766665443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.9e-13 Score=124.98 Aligned_cols=133 Identities=18% Similarity=0.228 Sum_probs=127.5
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
.-+|....+|-.+|..|+..++...|++.|++|++++|.|-.+|+.+|++|.-++-..=|+-+|++|+.+.|.++..|..
T Consensus 358 kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 358 KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
||.||.++++.++|+.+|.+|+.....+..++..+|.++..+++ .++|..+++
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d--~~eAa~~ye 490 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD--LNEAAQYYE 490 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 778887777
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=5e-13 Score=117.88 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=112.3
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCC--HHHHHH
Q 014212 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-LAMGK--FKEALK 103 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~ 103 (429)
.++.++++..++++++.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 466789999999999999999999999999999999999999999999999999999999999975 77787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
.++++++.+|+++.+++.+|..+...|+ +++|+..++ ++++..|.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~------------~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQ------------KVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhhCCC
Confidence 9999999999999999999999988887 788888887 77777665
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.3e-13 Score=126.32 Aligned_cols=122 Identities=37% Similarity=0.622 Sum_probs=116.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
-.+|+.+......|+.+++.|+|..|+..|.+|++.+|+++.+|.|+|.||..++.+..|+.+++++++++|++..+|.+
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 34677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
-|.++..+.+|++|++.|+++++++|++.++.-.+..|...+
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998888887654
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=6.4e-13 Score=114.58 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=121.9
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKG 84 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 84 (429)
-+.+|+...+|..+|.+|.+.|+.+.|-+.|++|++++|++.++++|.|..+..+|++++|...|++|+.. .|..+..
T Consensus 62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t 141 (250)
T COG3063 62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT 141 (250)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999985 2456789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+-++|.|-.++|+++.|...|+++++++|+++.+...++..+...++ +..|..+++
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~--y~~Ar~~~~ 197 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD--YAPARLYLE 197 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc--chHHHHHHH
Confidence 99999999999999999999999999999999999888888877776 556655555
No 51
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.46 E-value=1e-12 Score=140.44 Aligned_cols=168 Identities=11% Similarity=0.108 Sum_probs=133.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|.....+..++......|++++|+..|+++++++|+ +.++.++|.++.++|++++|+..|++++.++|+++.++.++|.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334444445555556669999999999999999996 8899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEG 170 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 170 (429)
++..+|++++|+..|+++++++|+++.++.+++.++..+|+ +++|...++ +++++.|+........
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~------------~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYAR------------LVIDDIDNQALITPLT 717 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCCchhhhhh
Confidence 99999999999999999999999999999999999988887 677777777 8888888766554443
Q ss_pred CCC--CHHHHHHHHHHhhcccCCcH
Q 014212 171 DVI--TLDFVKKMMDDFKNQKCLHK 193 (429)
Q Consensus 171 ~~l--~~~~l~~li~~l~~~~~l~~ 193 (429)
+.+ ....+....+.+.....++.
T Consensus 718 g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 718 PEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 321 22234555555555555444
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.9e-13 Score=128.93 Aligned_cols=179 Identities=21% Similarity=0.261 Sum_probs=128.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|.....+..+|..|.+..+-++-...|.+|..++|.++.+|+.+|.+++-++++++|+..|+++++++|++..++..++
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 44444457778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc--------------------------
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES-------------------------- 143 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~-------------------------- 143 (429)
.+.++++++++++..|+.+.+.-|+.++.+...+.++...++ |.+|...|..
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq--Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ--FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh--HHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 888888888888888888888888888888888887766665 5555544332
Q ss_pred ---ccccccccccccccccCCCCCCCcccCCC--CCHHHHHHHHHHhhcccC
Q 014212 144 ---ERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDFKNQKC 190 (429)
Q Consensus 144 ---~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--l~~~~l~~li~~l~~~~~ 190 (429)
++...|.....++++++|....+....++ +..+.+++.++.|.+...
T Consensus 514 qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23334555556677777766555444333 233445566666554433
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=1.1e-12 Score=134.21 Aligned_cols=133 Identities=13% Similarity=0.034 Sum_probs=110.1
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.++.+++.
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 44677888888888888888888888888888888888888888888888888888888888888888888888877777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++.+++..|++++|+..++++++.. |+++.++..++.++..+|+ +++|...+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~--~~eA~~~~~ 465 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK--HELARKLTK 465 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 7777777888888888888888775 7788888888888877777 666666655
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.2e-12 Score=121.93 Aligned_cols=153 Identities=26% Similarity=0.321 Sum_probs=137.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
...+.++...|-.++-.|++-.|.+.++++++++|.+...|..+|.+|.+..+.++-.+.|.+|..++|++++.|+.+|+
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-----HHHhhc---------------CCccccccccc
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIA---------------VPESERHSVAD 150 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~a~~---------------~~~~~~~~~a~ 150 (429)
++.-++++++|+..|+++++++|++.-++..++.+..+.++.. |++++. +..+.++..|.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 9999999999999999999999999999988888887777632 444443 23467888999
Q ss_pred cccccccccCCCC
Q 014212 151 SIDYQSIEVEPQY 163 (429)
Q Consensus 151 ~~~~~~l~~~~~~ 163 (429)
+.|..++++.|.-
T Consensus 483 k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 483 KQYDKAIELEPRE 495 (606)
T ss_pred HHHHHHHhhcccc
Confidence 9999999999883
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=1.7e-12 Score=132.87 Aligned_cols=134 Identities=20% Similarity=0.135 Sum_probs=118.3
Q ss_pred CcccHhHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 7 ENSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
...+|+.+.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+..|++++++
T Consensus 288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 367 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL 367 (553)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 355788888999999887643 44899999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|+++.+++.+|.++..+|++++|+..++++++++|.++.+...++.++...++ +++|+..++
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~ 430 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGD 430 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHH
Confidence 999999999999999999999999999999999999998877666666655555 566666655
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.3e-12 Score=127.88 Aligned_cols=134 Identities=21% Similarity=0.305 Sum_probs=111.2
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
-..+|..-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|..+.++|+.++|++.+++|+.++|.++-..+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 34577788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..|.++..++++++|+..+++.-++.|+...+++.+|.++..+++ ...|+..+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~--~~~Al~~f~ 615 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN--TDLALLHFS 615 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--chHHHHhhH
Confidence 888888888888888888888888888888888888888888887 445555444
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.41 E-value=7.5e-13 Score=119.94 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=139.0
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
...+|.+++.++.+|..++..|++..|+..|-.|++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|++..+..
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
..|.++.++|++++|...|.+.+..+|++ .++...++.+...... .......+..+....++......+++.|+-
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l--~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL--VQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH--HHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 99999999999999999999999999954 4566666665554444 566777787888888888888999988865
Q ss_pred CC
Q 014212 164 SG 165 (429)
Q Consensus 164 ~~ 165 (429)
..
T Consensus 189 a~ 190 (504)
T KOG0624|consen 189 AS 190 (504)
T ss_pred hH
Confidence 43
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=7.4e-12 Score=112.77 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=119.9
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
.......+..+..+|..++..|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++.
T Consensus 24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 33445568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++|.++..+|++++|+..+++++... |.....+..++.++...++ +++|...+.
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 159 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLT 159 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999864 4556778888888877776 667766666
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=3.6e-12 Score=131.47 Aligned_cols=132 Identities=6% Similarity=-0.024 Sum_probs=124.3
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.-|..+++++.+|.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|.++.++|++++|++.|++++..+|+++.++..++.+++..|+ .++|...++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~ 212 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQ 212 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 455555554
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.39 E-value=3.8e-12 Score=132.56 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQ----AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
|..+.++..+|..+...|++++ |+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|+++.++.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4444455555555555555543 455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.+|.++..+|++++|+..|+++++.+|+++.+...++.++...|+
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 555555555555555555555555555554444444444444444
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=9.6e-12 Score=112.01 Aligned_cols=132 Identities=22% Similarity=0.233 Sum_probs=121.9
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCChHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYY 86 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 86 (429)
.+|..+.++..+|..+...|++++|++.|+++++..|.+..++.++|.++...|++++|++.+++++... +.....+.
T Consensus 60 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (234)
T TIGR02521 60 HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139 (234)
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence 4577788999999999999999999999999999999999999999999999999999999999999864 45677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+|.++...|++++|...++++++.+|+++.++..++.++...++ +++|...++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 193 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLE 193 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999999988887 777777766
No 62
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=3.7e-12 Score=132.72 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH----HHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS----AIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
...++..+...|++++|+..|+++++.+|+++.++.++|.++..+|++++ |+..|+++++++|+++.++..+|.++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+|++++|+..++++++++|+++.++..++.++...|+ +++|+..++
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~ 342 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFV 342 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 999999999999999999999999999999999988887 777777766
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=8.2e-12 Score=113.84 Aligned_cols=155 Identities=23% Similarity=0.221 Sum_probs=128.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH-
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK- 83 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~- 83 (429)
+.++..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 56677889999999999999999999999999999999876 57899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHHHhHHHHHhhcCCccccccccc
Q 014212 84 --GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPNDPDAAQKV---KECEKAVKKLKFEEAIAVPESERHSVAD 150 (429)
Q Consensus 84 --~~~~la~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 150 (429)
+++.+|.++... |++++|+..|+++++.+|++..+...+ +..........+..|..++..++...|.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 799999999987 889999999999999999997654333 3333333333345555666777777777
Q ss_pred cccccccccCCC
Q 014212 151 SIDYQSIEVEPQ 162 (429)
Q Consensus 151 ~~~~~~l~~~~~ 162 (429)
..+.+++...|.
T Consensus 187 ~~~~~al~~~p~ 198 (235)
T TIGR03302 187 NRFETVVENYPD 198 (235)
T ss_pred HHHHHHHHHCCC
Confidence 777788877665
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=1.1e-11 Score=132.77 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=123.1
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+|+ +.++..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++
T Consensus 605 l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 605 IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3554 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 143 (429)
|.++..+|++++|+.+|+++++++|++..+....+.+.....+ ++.+...+.+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~--~~~a~~~~~r 736 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN--FRRLHEEVGR 736 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999999988877665 7777776663
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=4.8e-12 Score=118.56 Aligned_cols=131 Identities=22% Similarity=0.302 Sum_probs=106.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.+.++..+..+|..+.+.|++++|++.|+++++.+|+++.++..++.++...|+++++...++......|+++..|..+|
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++..+|++++|+..|+++++.+|+++.++..++.++...|+ .++|+.+..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~ 272 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRR 272 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHhccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence 999999999999999999999999999999999999999998 677777666
No 66
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.8e-11 Score=113.01 Aligned_cols=123 Identities=30% Similarity=0.470 Sum_probs=110.9
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----N-----------AVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
....+......|+.+++.|+|..|...|++|+..-.. + ..++.|++.|+.++++|.+|+..+.++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 4456777889999999999999999999999875321 1 356899999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
|.++|.|..++|+.|.++..+|+|+.|+..|+++++++|+|..+...+..+.......
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888777664
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=5.8e-12 Score=104.30 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=106.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
+.|+++++.+|++..+.+.+|.++...|++++|...+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++..++.++.++...++ +++|+..++ ++++.+|..
T Consensus 84 ~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE--PESALKALD------------LAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhcccc
Confidence 99999999999998887 778877776 667666643
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.34 E-value=4.3e-11 Score=96.41 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR 87 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 87 (429)
++.++.+|..+...|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 6789999999999999999999999999999885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (429)
+|.++..+|++++|...++++++..|+++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999887543
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.34 E-value=3.3e-11 Score=106.22 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=121.3
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
...+|.+...+..+|...+..|+|..|+..++++..++|++..+|..+|.+|.+.|++++|...|.+++++.|..+.+..
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 34567777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|+|..|.-.|+++.|...+..+....+.+..+..+++.+....++ +.+|.....
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~--~~~A~~i~~ 226 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD--FREAEDIAV 226 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--hHHHHhhcc
Confidence 999999999999999999999999988899999999999988888 555554444
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.1e-12 Score=122.63 Aligned_cols=120 Identities=15% Similarity=0.284 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
.++++...+|..|+-.|+|++|+.+|+.||..+|++...|..||..+....+.++|+..|++|+++.|.+..++|++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHh
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPND----------PDAAQKVKECEKAVKK 131 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~ 131 (429)
+..+|.|+||+++|-.||.+.+.. ..+|..|..+...+++
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999999999999999999997651 2477777777766666
No 71
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=3.5e-11 Score=101.43 Aligned_cols=117 Identities=36% Similarity=0.597 Sum_probs=106.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
....+..+...|+.+|..|+|++|...|..||+..|.. .-.|.++|.|+++++.++.|+..+.+||+++|.+..+
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 45677889999999999999999999999999999985 4568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+.+.|.+|.++.++++|++.|++.++.+|...++...++.+-
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 999999999999999999999999999999887766555443
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2e-11 Score=117.89 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=137.8
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------- 78 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 78 (429)
+-.++|.++++|..+|.+....++-..|+..+++|++++|++..++..||..|...|.-.+|+.++.+-+...
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 3467999999999999999999999999999999999999999999999999999998888988888765432
Q ss_pred ----------------------------------C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212 79 ----------------------------------P--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (429)
Q Consensus 79 ----------------------------------p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (429)
| .+++....||.+|...|+|++|+.+|+.||..+|++...|..|
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 3 4567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCC--CCHHHHHHHHHHh
Q 014212 123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDF 185 (429)
Q Consensus 123 ~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--l~~~~l~~li~~l 185 (429)
|-.+.--. +..+|+..|.+++++.|.|..++.+.+. |-+...++.+.++
T Consensus 471 GAtLAN~~--------------~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 471 GATLANGN--------------RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHhcCCc--------------ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 87664433 3445555555999999999999888763 4444444444443
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.29 E-value=8.5e-12 Score=138.36 Aligned_cols=156 Identities=16% Similarity=0.213 Sum_probs=126.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHhhCHHHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV--------------YYANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
..+|.++.++..+|.+++++|++++|+..|+++++.+|++.. ....+|.++...|++++|+..|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 346777888999999999999999999999999998887642 123457788889999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhh---------------
Q 014212 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI--------------- 138 (429)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~--------------- 138 (429)
+++++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..++.++... + .++|+
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~--~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-S--PEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C--HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888776432 1 22222
Q ss_pred ----------------cCCccccccccccccccccccCCCCCCC
Q 014212 139 ----------------AVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 139 ----------------~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
.+...++..+|...+.++++.+|+....
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 2334577788888888999998886544
No 74
>PLN02789 farnesyltranstransferase
Probab=99.29 E-value=5.9e-11 Score=112.04 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=120.9
Q ss_pred cccHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHhCCCChHH
Q 014212 8 NSSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY--GSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~ 84 (429)
..+|....+|..++.++...| ++++|+..++++++.+|++..+|..++.++..+++. ++++.++.++++.+|++..+
T Consensus 65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHH
Confidence 457888889999999998888 678999999999999999999999999888888864 67888899999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
|..++.++..+|++++|++++.++++.+|.+..++..++.+...++.. .-++ .....+.....+++..+|.+.
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l------~~~~-~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL------GGLE-AMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc------cccc-ccHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999888776544210 0000 011123333347788888877
Q ss_pred CCcc
Q 014212 165 GARI 168 (429)
Q Consensus 165 ~~~~ 168 (429)
.+..
T Consensus 218 SaW~ 221 (320)
T PLN02789 218 SPWR 221 (320)
T ss_pred CHHH
Confidence 6643
No 75
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.29 E-value=1.2e-10 Score=100.76 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=100.9
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (429)
.....++..+..++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++..+|++++|+..+++++...|.+
T Consensus 26 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 26 LPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred cccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3456678889999999999999999999999999999987763 5789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 014212 82 PKGYYRRGAAYLAMGK--------------FKEALKDFQQVKKLSPND 115 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~~~p~~ 115 (429)
..++..+|.++..+|+ +++|.+.+++++..+|++
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999988 678888888888888887
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=3.5e-11 Score=113.38 Aligned_cols=123 Identities=18% Similarity=0.131 Sum_probs=110.4
Q ss_pred hcCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 27 AKKYSQAIDLYSQAIELNS---Q-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p---~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567889999999996443 3 37789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
..|+++++++|++..++.++|.++...++ +++|+..++ ++++.+|..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~------------~al~~~P~~ 165 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLL------------AFYQDDPND 165 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhCCCC
Confidence 99999999999999999999999988887 778877777 777777765
No 77
>PRK15331 chaperone protein SicA; Provisional
Probab=99.28 E-value=1.9e-10 Score=95.34 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=106.5
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
.....++..+..+..|..++.+|++++|...|+-+...+|.++..|..||.|+..+++|++|+..|..|..++++++.+.
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
+..|.||..+|+.++|..+|+.++. .|.+......
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 9999999999999999999999999 5776654433
No 78
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=2.2e-10 Score=115.79 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=123.0
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
+..+..+...|+.++..|++++|.+.+.++++++|.++.+|+.||.+|.++|+.++|...+-.|-.++|.+.+.|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...++|.+++|.-+|.+|++.+|.+.........++..+|+ ..+|...+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~ 265 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFL 265 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999988 566666666
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.27 E-value=9.3e-11 Score=89.25 Aligned_cols=99 Identities=39% Similarity=0.664 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (429)
+++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 014212 96 GKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 96 g~~~eA~~~~~~al~~~p~ 114 (429)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988774
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.26 E-value=2.9e-11 Score=87.54 Aligned_cols=66 Identities=36% Similarity=0.617 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSP 113 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 113 (429)
+..|..+|.+++..|++++|+.+|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555554
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=1.3e-10 Score=105.88 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=115.0
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh--------hCHHHHHHHHHHHHHhC
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTKL--------EEYGSAIQDASKAIEID 78 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~ 78 (429)
+|....+++.+|..++..|++++|+..|+++++..|+++. +++.+|.++... |++++|++.+++++..+
T Consensus 66 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 66 SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 3445578999999999999999999999999999998765 789999999987 89999999999999999
Q ss_pred CCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhh
Q 014212 79 PRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAI 138 (429)
Q Consensus 79 p~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~ 138 (429)
|++..++ ..+|.+|..+|++.+|+..|+++++..|+. ++++..++.++..+++ +++|.
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~ 223 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQ 223 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHH
Confidence 9986542 467889999999999999999999997764 5899999999999998 77777
Q ss_pred cCCc
Q 014212 139 AVPE 142 (429)
Q Consensus 139 ~~~~ 142 (429)
.+++
T Consensus 224 ~~~~ 227 (235)
T TIGR03302 224 DAAA 227 (235)
T ss_pred HHHH
Confidence 6554
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.25 E-value=2.7e-11 Score=87.69 Aligned_cols=67 Identities=39% Similarity=0.584 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCC
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDP 79 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 79 (429)
++..+..+|..++..|+|++|+..|+++++.+|+++.+++++|.+++.+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999998
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=5.4e-11 Score=98.24 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=94.4
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 38 SQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 38 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
..+..+. +++....+.+|..+++.|++++|.+.|+.+..++|.+...|++||.++..+|++.+|+..|.+|+.++|++|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3344567 788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 117 DAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+.++.|.++..+|+ .+.|...++
T Consensus 104 ~~~~~ag~c~L~lG~--~~~A~~aF~ 127 (157)
T PRK15363 104 QAPWAAAECYLACDN--VCYAIKALK 127 (157)
T ss_pred hHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999998 566666655
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.4e-11 Score=108.16 Aligned_cols=101 Identities=28% Similarity=0.452 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
-+-.-|.-+++.++|++|+..|.+||+++|.++-.|++.|.+|.++|+++.|++.++.|+.++|.+..+|..++.++..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 35566888899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
++ +++|+..|. ++++++|.+.
T Consensus 163 gk--~~~A~~ayk------------KaLeldP~Ne 183 (304)
T KOG0553|consen 163 GK--YEEAIEAYK------------KALELDPDNE 183 (304)
T ss_pred Cc--HHHHHHHHH------------hhhccCCCcH
Confidence 87 777777766 8999999874
No 85
>PLN02789 farnesyltranstransferase
Probab=99.23 E-value=2e-10 Score=108.48 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=127.7
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
++-.+++-.+--++...+++++|+..+.++++++|++..+|..++.++..++ ++++|+..+.++++.+|++..+|+.++
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 4445555455555677889999999999999999999999999999999998 689999999999999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212 90 AAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (429)
Q Consensus 90 ~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (429)
.++..+|+. ++++.+++++++.+|++..+|...+.+...+++ +++++..+. ++++.+|.+..+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~------------~~I~~d~~N~sAW 179 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCH------------QLLEEDVRNNSAW 179 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHH------------HHHHHCCCchhHH
Confidence 999999974 788999999999999999999999999999987 777887777 8888888887664
Q ss_pred cc
Q 014212 168 IE 169 (429)
Q Consensus 168 ~~ 169 (429)
..
T Consensus 180 ~~ 181 (320)
T PLN02789 180 NQ 181 (320)
T ss_pred HH
Confidence 43
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=9.9e-11 Score=112.32 Aligned_cols=112 Identities=32% Similarity=0.572 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
......|+..+..|+|+.|+.+|..++.++|.+...|.++..+|..+|+|++|++...+.++++|+.+.+|.++|.++.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+|+|++|+..|.+.|+.+|++..+...++.++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999888
No 87
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=6.5e-10 Score=109.16 Aligned_cols=131 Identities=12% Similarity=0.010 Sum_probs=79.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+|.++.++..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..|+++++.+|.+..++
T Consensus 65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 144 (389)
T PRK11788 65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL 144 (389)
T ss_pred CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence 45556666666666666666666666666666543222 24456666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-----AAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++.++...|++++|++.++++++..|.+.. .+..++.++...++ +++|+..++
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 204 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD--LDAARALLK 204 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 66666666666666666666666666655422 23344444444444 555555555
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.20 E-value=2.8e-10 Score=120.99 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=119.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|..+.++..+|..+...|++++|++.|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++..+|++++|+..++++++..|+++.++..++.++...+. .++|+..++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~--~e~Al~~l~ 174 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL--SAPALGAID 174 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHH
Confidence 999999999999999999999999999999999988876555 455554443
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.19 E-value=2.4e-10 Score=123.53 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=123.1
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...+..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.+++++..+|.+..++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (899)
T TIGR02917 119 LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198 (899)
T ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.++...|++++|...|+++++.+|+++.++..++.++...++ +++|...++
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 251 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHAD 251 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999888776 566655444
No 90
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.19 E-value=2.2e-10 Score=123.93 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=88.3
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|++..++..+|..+...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 455566666667777777777777777777777777766666677777766666 6677777777777777766666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++..+|++++|+..|+++++.+|.++.++..++.++...|+ +++|...++
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 895 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR--KAEARKELD 895 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 777777777777777777777777777777777666666665 555555443
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.19 E-value=2.2e-10 Score=127.21 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=111.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH--------------
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG-------------- 84 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------- 84 (429)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++.++|++++|+..|+++++.+|++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 458899999999999999999999999999999999999999999999999999999999986531
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...+|.++...|++++|+..|+++++++|+++.++..++.++...++ +++|+..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~ 409 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQ 409 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 23458889999999999999999999999999999999999988887 777777766
No 92
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.18 E-value=1.5e-10 Score=105.19 Aligned_cols=114 Identities=36% Similarity=0.492 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
...+...|+.|+++|.|++|+.+|.+++..+|.++..+.++|.+|++++.|..|...|..|+.++.....+|.+.|.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
.+|+..+|.+.++.++++.|++.+....++.+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999998887666655443
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.17 E-value=7.5e-11 Score=89.01 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=73.9
Q ss_pred HhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 014212 26 RAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (429)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 103 (429)
.+|+|++|+..|+++++..|. +...++.+|.|++++|++++|+..+++ ...+|.+...++.+|.++.++|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 014212 104 DFQQV 108 (429)
Q Consensus 104 ~~~~a 108 (429)
.|++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.17 E-value=6.6e-10 Score=109.10 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=79.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
.|....++..++..+...|++++|++.++++++..|.+. ..+..+|.++...|++++|+..|+++++.+|++..+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 444556666666666666666666666666666665542 244556666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHhhc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIA 139 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~a~~ 139 (429)
++.+|.++...|++++|++.++++++.+|++ ..++..++.++...++ +++|+.
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~--~~~A~~ 270 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD--EAEGLE 270 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC--HHHHHH
Confidence 6666666666666666666666666666654 2345555555555554 344443
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.16 E-value=9.9e-10 Score=94.60 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=94.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
......+..++.+|..+...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|.+...
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 445556888999999999999999999999999998776 34689999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 014212 85 YYRRGAAYL-------AMGKFK-------EALKDFQQVKKLSPNDP 116 (429)
Q Consensus 85 ~~~la~~~~-------~~g~~~-------eA~~~~~~al~~~p~~~ 116 (429)
+.++|.++. .+|+++ +|+..|++++..+|++.
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999 777766 66666777777888654
No 96
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.2e-10 Score=118.50 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=143.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
..+|.++-++...|.+.+..|+|..|+.+|++++.++|.. +.....+|.|+.++++.+.|+..|++|++++|.+..++.
T Consensus 158 ~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 158 KQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred hhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence 4678899999999999999999999999999999999985 667788999999999999999999999999999999999
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-----------------------HHHhhcC
Q 014212 87 RRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----------------------FEEAIAV 140 (429)
Q Consensus 87 ~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----------------------~~~a~~~ 140 (429)
.||.+-.... .+..|+..+.++...+|++|.++..++.-+...+++. |..|..+
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9998777665 4678999999999999999999999998877666653 6667777
Q ss_pred CccccccccccccccccccCCCC-CCCcccCC
Q 014212 141 PESERHSVADSIDYQSIEVEPQY-SGARIEGD 171 (429)
Q Consensus 141 ~~~~~~~~a~~~~~~~l~~~~~~-~~~~~~~~ 171 (429)
+.+++++.|..+|.+++..++++ .-+....+
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 88999999999999999988887 44444433
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=9.8e-10 Score=96.23 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=130.3
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
-|.........|..+-..|+|++|+++|+..++-+|.+..++...-.+...+|+.-+|++.+..-++..+.+.++|..++
T Consensus 82 fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLa 161 (289)
T KOG3060|consen 82 FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELA 161 (289)
T ss_pred CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46667777788999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-HHHhhcCCccccccccccccccccccCCCCCCCcc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-FEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 168 (429)
.+|...|+|++|.-++++.+-+.|.++-.+..++.++..+|..+ .+.|..+|+ ++++++|.+..+.+
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~------------~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE------------RALKLNPKNLRALF 229 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHhChHhHHHHH
Confidence 99999999999999999999999999999999999988777643 444555555 88888886655544
Q ss_pred cC
Q 014212 169 EG 170 (429)
Q Consensus 169 ~~ 170 (429)
+.
T Consensus 230 GI 231 (289)
T KOG3060|consen 230 GI 231 (289)
T ss_pred HH
Confidence 43
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=6.1e-10 Score=98.33 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=122.4
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+|++..+ ..++..+...|+-+.++.+..++....|.+......+|...++.|+|.+|+..++++..+.|+++++|.-
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 457777888 9999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.+|.+.|++++|...|.+++++.|+++.+..+++..+...++ ++.|..+..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd--~~~A~~lll 192 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD--LEDAETLLL 192 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999998888 566655544
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.3e-10 Score=107.44 Aligned_cols=173 Identities=17% Similarity=0.154 Sum_probs=136.5
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+.-++.++.+.|+..+..|++++|.+.|++|+..+..-..+++++|..+..+|++++|+++|-+...+--+++++++.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456778888999999999999999999999998888899999999999999999999999999988888999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC--
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA-- 166 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~-- 166 (429)
|.+|..+.+..+|++.+.++..+-|++|.++..++.++-+.|+ ...|..++- ....-.|-+...
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd--ksqafq~~y------------dsyryfp~nie~ie 630 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD--KSQAFQCHY------------DSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc--hhhhhhhhh------------hcccccCcchHHHH
Confidence 9999999999999999999999999999999999999988886 344444332 222222322222
Q ss_pred cccCCCCCHHHHHHHHHHhhcccCCcHHH
Q 014212 167 RIEGDVITLDFVKKMMDDFKNQKCLHKRY 195 (429)
Q Consensus 167 ~~~~~~l~~~~l~~li~~l~~~~~l~~~~ 195 (429)
++...++..++.++.+..+.+...+.+..
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 22222245555666666666655555443
No 100
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.8e-10 Score=104.32 Aligned_cols=124 Identities=30% Similarity=0.519 Sum_probs=111.7
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
+...|.....+...|+..++.|+|.+|-+.|..+|.++|++ +..|.++|.+...+|+..+|+..++.|+.++|...
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 34567888999999999999999999999999999999995 67799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.++...|.|+..++++++|++.|++|++...+ .+....+..+...+.+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877 6666666666555553
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=1.7e-09 Score=103.19 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=118.4
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|....++|..|..++..|++++|+..++..++..|+|+.++...+.+++..++.++|.+.+++++.++|..+-.+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
+|.+.|++.+|+..++..+..+|+++..|..|+..+..+|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999998873
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.3e-10 Score=108.44 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----C---CChHHHHHHHHH
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----P---RYPKGYYRRGAA 91 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~la~~ 91 (429)
-+|..|.+.++++.|.+.|.+|+.+.|.++..+..+|.+.+..+.|.+|..+|++++..- + .....+.+||.+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 466677778888888888888888899999999999999999999999999999988432 1 133458899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
+++++++++|+.+|++++.+.|.++.++..+|.++..+|+ ++.|+..+. +++.+.|..
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn--ld~Aid~fh------------KaL~l~p~n 522 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN--LDKAIDHFH------------KALALKPDN 522 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--hHHHHHHHH------------HHHhcCCcc
Confidence 9999999999999999999999999999999999999998 888888887 777777664
No 103
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-09 Score=97.53 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=103.9
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~ 84 (429)
..+|++++-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++.+. ...++.+.+++++..||.+..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4589999999999999999999999999999999999999999999999987764 4668999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (429)
.+.||..+.++|+|.+|...+++.++..|.+..-...+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999999988765544333
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=3.8e-10 Score=80.58 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=30.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (429)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44444455555555555555555555555555555555555555555555555555444443
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=3.6e-10 Score=80.73 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
+.+|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999986
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.09 E-value=4.1e-09 Score=96.69 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHH
Q 014212 13 RAEELKALANEA-FRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGY 85 (429)
Q Consensus 13 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 85 (429)
.....+..|..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788888876 67899999999999999999998 589999999999999999999999999999887 47899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
+.+|.++..+|++++|...|+++++..|+...+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 999999999999999999999999999998865443
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=5.2e-09 Score=95.36 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
..+......++..|++..|+++....+++.|-++..+..++.||...|+...|+..++.+-++..++.+.+|.++.+++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 34556667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCC--
Q 014212 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV-- 172 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~-- 172 (429)
.|+.+.++...+.+++++|++...+.....+....+. .+.+....+...+.++.....++++.+|.-...+++.-.
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~--les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS--LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 9999999999999999999998766555554444333 333444444555566666666888888775544444321
Q ss_pred ----CCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHh
Q 014212 173 ----ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLR 208 (429)
Q Consensus 173 ----l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~ 208 (429)
-..+.+.+.+........+.+.++..+|+.+...+-
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 112234444455555555555556666666555443
No 108
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-10 Score=111.08 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=146.1
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...|+.+-.|+..|..|+..|++.+|.++|.++..++|....+|...|..+...++.++|+.+|.+|-++-|..-...+.
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc-------------------------
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE------------------------- 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~------------------------- 142 (429)
+|.=|..+++++-|..+|.+|+.+.|++|-....+|.+....+. |.+|..+++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~--y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE--YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh--hHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 99999999999999999999999999888777777766654443 444443332
Q ss_pred ----cccccccccccccccccCCCCCCCcccCCC--CCHHHHHHHHHHhhcccCCcHH--HHHHHHHHHHHH
Q 014212 143 ----SERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHKR--YAFQIVLQTREM 206 (429)
Q Consensus 143 ----~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--l~~~~l~~li~~l~~~~~l~~~--~~~~ll~~a~~~ 206 (429)
.+.+.+|...+++++.+.|.........+. ..++.++.+++.+.+...+.+. .+.+++..+.+.
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 123445555555777777766555433322 2344566666666655544432 244444444443
No 109
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=5.1e-10 Score=104.87 Aligned_cols=130 Identities=24% Similarity=0.340 Sum_probs=103.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
..++..+......+...++++++...++++.+.. +.++..|..+|.++.+.|+.++|+.+++++++++|+++.+...+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 107 DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp -----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456667778888999999999999999987655 67889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+.++...|+.++|.+.+....+..|+++..+..++.++..+|+ .++|+..++
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~ 238 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLE 238 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccc
Confidence 9999999999999999999999889999999999999999998 788888887
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.07 E-value=2.5e-09 Score=110.60 Aligned_cols=111 Identities=11% Similarity=0.006 Sum_probs=105.6
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
+-.|....+...+|.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..
T Consensus 114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~ 193 (694)
T PRK15179 114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG 193 (694)
T ss_pred hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
+|.++...|+.++|...|++|++...+-...
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999987665544
No 111
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4e-10 Score=104.84 Aligned_cols=133 Identities=24% Similarity=0.327 Sum_probs=122.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------------VYYANRAFAHTKLEEYGSAIQDASKAI 75 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (429)
..++.++++++..|.+++-..+.+.|+..|+++++++|+.. ..+...|.-.++.|++..|.++|..+|
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 34778899999999999999999999999999999999853 457778999999999999999999999
Q ss_pred HhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 76 EIDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 76 ~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++|++ +..|.++|.+...+|+..+|+..++.|++++|....++...+.|+..+++ |++|...++
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~ 345 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYE 345 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 999975 56799999999999999999999999999999999999999999999998 888888877
No 112
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.05 E-value=2.7e-09 Score=113.51 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=121.9
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
....|-++........++.-.|++++|++.+.++...+|..+.++..+|.++...|++++|+..|+++++++|.++.++.
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44566667777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+|.++...|++++|+..++++++..|+++. +..++.++...++ +++|+..++
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~ 140 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMT 140 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHH
Confidence 9999999999999999999999999999999 9999999988887 566666655
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=6e-09 Score=94.84 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGY 85 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 85 (429)
.++..++..|..++..|+|++|++.|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4677799999999999999999999999999999986554 8999999999999999999999999999864 578
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhhcCCccc
Q 014212 86 YRRGAAYLAMGK------------------FKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (429)
Q Consensus 86 ~~la~~~~~~g~------------------~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~ 144 (429)
+.+|.++..+++ ..+|+..|++.++..|+. +++...+..+...+.+.++.-|.-++..+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988755541 357889999999999987 46777888888888888887777778877
Q ss_pred cccccccccccccccCCCC
Q 014212 145 RHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 145 ~~~~a~~~~~~~l~~~~~~ 163 (429)
.+..|......+++-.|+.
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t 208 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDT 208 (243)
T ss_pred chHHHHHHHHHHHHHCCCC
Confidence 7777777677777655543
No 114
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.02 E-value=3.3e-09 Score=111.73 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=120.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
-.|+.+...+..|...+++|+++.|+..|+++++.+|.++.+...+..++...|+.++|+..+++++.-.|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 35677889999999999999999999999999999999965545888888889999999999999993333344444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc---------------------cccc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES---------------------ERHS 147 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~---------------------~~~~ 147 (429)
|.++..+|++++|++.|+++++.+|+++.++..++.++...++ .++|+...++ ....
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q--~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR--GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 7799999999999999999999999999999888777777666 4454443221 2222
Q ss_pred ccccccccccccCCCCCCC
Q 014212 148 VADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 148 ~a~~~~~~~l~~~~~~~~~ 166 (429)
+|...+.++++.+|.....
T Consensus 187 ~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 3666666777777776544
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=7e-09 Score=92.11 Aligned_cols=152 Identities=23% Similarity=0.258 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGY 85 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 85 (429)
.++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++.+|+..+++.+...|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357889999999999999999999999999998875 67899999999999999999999999999999865 588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhHHHHHhhcCCcccccccccc
Q 014212 86 YRRGAAYLAMG-----------KFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS 151 (429)
Q Consensus 86 ~~la~~~~~~g-----------~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 151 (429)
+.+|.++..+. ...+|+..|+..+...|+++ ++...+..+...+...++.-|.-++..+.+..|..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999877653 34589999999999999885 56777888888888888888888888888888888
Q ss_pred ccccccccCCCC
Q 014212 152 IDYQSIEVEPQY 163 (429)
Q Consensus 152 ~~~~~l~~~~~~ 163 (429)
.+..+++-.|+.
T Consensus 163 r~~~v~~~yp~t 174 (203)
T PF13525_consen 163 RFQYVIENYPDT 174 (203)
T ss_dssp HHHHHHHHSTTS
T ss_pred HHHHHHHHCCCC
Confidence 888888776654
No 116
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=2.9e-09 Score=106.19 Aligned_cols=126 Identities=16% Similarity=0.080 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
...|...|..+...+..++|.-++.++-+++|..+..|+..|.++...|++++|.+.|..|+.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34556666667777777777777788877888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212 94 AMGKFKEALK--DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 94 ~~g~~~eA~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 141 (429)
+.|+-.-|.. .+..+++++|.++++|+.+|.+....|+ .+.|.+.+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf 777 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECF 777 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHH
Confidence 8877666666 7778888888888888888888877777 44444443
No 117
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1e-08 Score=92.88 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHH
Q 014212 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDF 105 (429)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~ 105 (429)
+.++.+.-++.-++.+|+|+.-|..||.+|+.+|++..|+..|.+|+++.|++++.+..+|.+++.+. ...+|...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999998877654 347899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 106 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++++.++|++..+.+.++..+...++ +.+|+..++
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq 251 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQ 251 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 99999999999999999999988888 888888877
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=1.2e-08 Score=100.87 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=137.7
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
+.....|....+...+|..|..+|+|++|+..+++|++. .|.-......+|.+|..++++.+|+..|++|+.
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345678888899999999999999999999999999998 566666677799999999999999999999997
Q ss_pred hC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHHhHHHHHhhcC
Q 014212 77 ID--------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PNDPD---AAQKVKECEKAVKKLKFEEAIAV 140 (429)
Q Consensus 77 ~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~~~---~~~~l~~~~~~~~~~~~~~a~~~ 140 (429)
+. |..+.++.+||.+|...|++++|..++++|+++. ...++ .+..++.++..+++ +++|..+
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l 347 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKL 347 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHH
Confidence 63 4456789999999999999999999999999874 23333 34455555544444 6666666
Q ss_pred CccccccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhC
Q 014212 141 PESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL 210 (429)
Q Consensus 141 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~ 210 (429)
+. +++++.....+... .........+.+.+...++..+ +..+..++..+...-
T Consensus 348 ~q------------~al~i~~~~~g~~~---~~~a~~~~nl~~l~~~~gk~~e--a~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 348 LQ------------KALKIYLDAPGEDN---VNLAKIYANLAELYLKMGKYKE--AEELYKKAIQILREL 400 (508)
T ss_pred HH------------HHHHHHHhhccccc---hHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHhc
Confidence 65 55544332111111 1233445566666777776655 777777777777643
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.96 E-value=4.1e-09 Score=101.70 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
+...|..++..|+|++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..++++++++|+++.+++.+|.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
+ +++|+..++ ++++++|....
T Consensus 85 ~--~~eA~~~~~------------~al~l~P~~~~ 105 (356)
T PLN03088 85 E--YQTAKAALE------------KGASLAPGDSR 105 (356)
T ss_pred C--HHHHHHHHH------------HHHHhCCCCHH
Confidence 8 788888777 88888887643
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=2.1e-09 Score=106.69 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+.+.+.+|...+.+++|++|.+.++..++++|-....|+++|.|..++++++.|.++|.+++.++|++.++|.+++.+|
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34556666777777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...++-.+|...+++|++.+-+++..|.+...+....+. ++.|+..+.
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~ 611 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYH 611 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHH
Confidence 999999999999999999999999999888888877777 777777766
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=3.2e-09 Score=91.45 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=93.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcC
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMG 96 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g 96 (429)
+.++-.+.|..+...+.+.++..+.+ ...++++|.++..+|++++|+..|++++.+.|+ .+.+++++|.++..+|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 34455566777778887776666665 677899999999999999999999999998776 3458999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 97 KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 97 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
++++|+..|++++++.|.+...+..++.++..+++
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999985553
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=1.6e-08 Score=105.69 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=118.5
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--- 82 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--- 82 (429)
..+-+|....++..+...+...+++++|++..+.+++..|+...+|+.+|.++++.+++.+|... +++..-+.+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 34558899999999999999999999999999999999999999999999999999998877665 6666655555
Q ss_pred ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 83 ----------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 83 ----------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+++.+|.||.++|+.++|...|+++++++|+++.++.++|..+... + +++|..++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d--L~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D--KEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h--HHHHHHHHH
Confidence 89999999999999999999999999999999999999999999887 4 777777665
No 123
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.1e-09 Score=91.48 Aligned_cols=102 Identities=37% Similarity=0.559 Sum_probs=96.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
...+..+...|+.++...+|..|+..|.+|+.++|..+..|.+.+.|++++++++.+...+++|++++|+...+++.+|.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~ 112 (429)
+......|++|+..+++|..+.
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999999997764
No 124
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.91 E-value=2.8e-08 Score=99.97 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHHHHHh--CC
Q 014212 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--------EEYGSAIQDASKAIEI--DP 79 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~--~p 79 (429)
.+..++..|..++..++ +.+|+.+|++|++++|+++.++-.++.++... .+..+|.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 56667888888887655 88999999999999999999999998888664 2355677777777764 77
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~ 159 (429)
..+.+|.-+|..+...|++++|...+++|++++| +..++..+|.++...|+ .++|+..++ +++.+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~------------~A~~L 482 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYS------------TAFNL 482 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhc
Confidence 7889999999999999999999999999999999 47899999999999998 788888877 88888
Q ss_pred CCCCCC
Q 014212 160 EPQYSG 165 (429)
Q Consensus 160 ~~~~~~ 165 (429)
+|.+..
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 887654
No 125
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.91 E-value=1e-08 Score=101.49 Aligned_cols=213 Identities=18% Similarity=0.212 Sum_probs=150.7
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 78 (429)
.+|.-+..+..+|..|..+++|.+|+..|++|+.+ +|..+.++.+||.+|...|++++|..++++|+++.
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 45566666778999999999999999999999985 45567889999999999999999999999999874
Q ss_pred ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhHHHHHhhcCCccc
Q 014212 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PND---PDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (429)
Q Consensus 79 ------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~ 144 (429)
|+-+..+.+++.++..++++++|...+++++++. +++ +..+.+++.++..+|+ +++|..+++
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk--~~ea~~~~k-- 391 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK--YKEAEELYK-- 391 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc--hhHHHHHHH--
Confidence 3345678899999999999999999999999874 233 4567778888877776 566666655
Q ss_pred cccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhh----CCCeeeecCCC
Q 014212 145 RHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA----LPSLVDIDIPD 220 (429)
Q Consensus 145 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~----~p~~~~~~~~~ 220 (429)
+++.......+......-. .+..+.......+.. +.+..+..++..+++. .|++...-
T Consensus 392 ----------~ai~~~~~~~~~~~~~~~~---~l~~la~~~~~~k~~--~~a~~l~~~~~~i~~~~g~~~~~~~~~~--- 453 (508)
T KOG1840|consen 392 ----------KAIQILRELLGKKDYGVGK---PLNQLAEAYEELKKY--EEAEQLFEEAKDIMKLCGPDHPDVTYTY--- 453 (508)
T ss_pred ----------HHHHHHHhcccCcChhhhH---HHHHHHHHHHHhccc--chHHHHHHHHHHHHHHhCCCCCchHHHH---
Confidence 7776654444432222112 233344444333333 3367778888777732 23332221
Q ss_pred CCceEEEccCCCCHHHHHHHHHHc
Q 014212 221 GKHFTVCGDVHGQFYDLLNIFELN 244 (429)
Q Consensus 221 ~~~~~v~GDihG~~~~l~~~l~~~ 244 (429)
.++...-+--|++++..++...+
T Consensus 454 -~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 454 -LNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred -HHHHHHHHHcccHHHHHHHHHHH
Confidence 13556667778888888776543
No 126
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.3e-07 Score=74.58 Aligned_cols=106 Identities=26% Similarity=0.347 Sum_probs=94.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----HHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYY 86 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~ 86 (429)
.+....+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+++.++..+|+.++|++.+++|+++..+.. .++.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 344456777888999999999999999999999999999999999999999999999999999999975543 4789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
..|.+|..+|+.+.|...|+.|-++.....
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999999999999876543
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=4.1e-08 Score=93.83 Aligned_cols=122 Identities=21% Similarity=0.174 Sum_probs=111.9
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...|+++..+-..+.+++..++..+|.+.+++++.++|+.+..+.++|.++++.|++++|+..+++.+..+|+++..|..
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
||.+|..+|+..+|...+...+.+......+...+.....+.
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888777766665554433
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.89 E-value=1.8e-08 Score=76.37 Aligned_cols=91 Identities=32% Similarity=0.502 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhHHHHHhhcCCc
Q 014212 130 KKLKFEEAIAVPE 142 (429)
Q Consensus 130 ~~~~~~~a~~~~~ 142 (429)
++ +++|...+.
T Consensus 82 ~~--~~~a~~~~~ 92 (100)
T cd00189 82 GK--YEEALEAYE 92 (100)
T ss_pred Hh--HHHHHHHHH
Confidence 87 666666554
No 129
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.1e-08 Score=87.37 Aligned_cols=108 Identities=26% Similarity=0.310 Sum_probs=97.3
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQ----------NAVYYANRAFAHTKLEEYGSAIQDAS 72 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (429)
-....++...|+-+++.|+|.+|...|+.|+.. .|. ....+.|++.|+...|+|-++++.+.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345678999999999999999999999999742 343 34678999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
..+..+|.|..|||..|.++....+.++|.+.|.++++++|.-..+
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999987654
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=5.9e-08 Score=77.65 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRR 88 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 88 (429)
.++++.|..+...|+.++|+..|+++++...+. ..++..+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999976554 568899999999999999999999999999888 78888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~ 110 (429)
+.++..+|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988876
No 131
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.88 E-value=8e-08 Score=78.15 Aligned_cols=107 Identities=28% Similarity=0.389 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY 86 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 86 (429)
.+..++..|...++.|+|++|++.|+.+....|.. ..+...+|.+|++.+++++|+..+++-++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46789999999999999999999999999987764 67889999999999999999999999999999875 5799
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 014212 87 RRGAAYLAMGK---------------FKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 87 ~la~~~~~~g~---------------~~eA~~~~~~al~~~p~~~~~~ 119 (429)
..|.++..+.. ..+|...|++.++..|++.-+-
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 99999999887 7899999999999999987543
No 132
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=1.5e-08 Score=74.06 Aligned_cols=67 Identities=31% Similarity=0.593 Sum_probs=41.6
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (429)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (429)
.+|.+.+++++|++++++++.++|+++..|+.+|.++..+|++.+|++.|+++++..|+++.+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666665554433
No 133
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.8e-09 Score=97.69 Aligned_cols=117 Identities=12% Similarity=0.191 Sum_probs=86.1
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHH
Q 014212 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGYYRRGAAYLAMGKFKE 100 (429)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~e 100 (429)
|+-.++.+-|+.+|++.+++.-.++..+.|+|.|++-.++++-++.+|++|+.... .-++.||++|.+....|++.-
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence 33444444444444444444445567788888888888888888888888887643 246789999998888999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|..+|+-|+..+|++.+++.+++.+..+.|+ ...|..++.
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLavL~~r~G~--i~~Arsll~ 453 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLAVLAARSGD--ILGARSLLN 453 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHHhhcCc--hHHHHHHHH
Confidence 9999999999999999999998888777666 555555554
No 134
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=3e-08 Score=89.87 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----hHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKGYY 86 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 86 (429)
....++..+|..|+..|-++.|...|...++....-..++..+..+|....+|++|++..++...+.+.. +..|+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 3455677777777777777777777777766555556778888888888888888888888888887753 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
.||..+....+++.|+..+.+|++-+|++..+...+|.+....|+ +++|+..++ .+++-+|.|.+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~--y~~AV~~~e------------~v~eQn~~yl~ 249 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD--YQKAVEALE------------RVLEQNPEYLS 249 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc--hHHHHHHHH------------HHHHhChHHHH
Confidence 888888888899999999999999999999998889888887777 788887777 67777777643
No 135
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.85 E-value=4.1e-08 Score=99.71 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=106.0
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
+...++|..+.+++.+|.+|-++|+.++|+...-.|..++|.+...|..++....++|.+++|.-+|.+|++++|.+.+.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~ 243 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL 243 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 113 (429)
.+..+.+|.++|+...|...|.+++.+.|
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999
No 136
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=3.1e-08 Score=99.02 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=106.0
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHhCCCChH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIEIDPRYPK 83 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~ 83 (429)
+....|..+..++..|..+..+|++++|.+.|..|+.++|+++.....+|.++.+.|+..-|.. .+..+++++|.+++
T Consensus 676 a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 676 ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 3456788889999999999999999999999999999999999999999999999999888888 99999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
+|+.+|.++.++|+.++|.++|+-|+++++.+|.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999998874
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=1.1e-08 Score=88.50 Aligned_cols=87 Identities=20% Similarity=0.344 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
+..+.+++++|..+...|++++|+.+|++++...|+. +.+++.+|.++..+|++++|+..++++++..|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3467789999999999999999999999999987763 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 014212 122 VKECEKAVKK 131 (429)
Q Consensus 122 l~~~~~~~~~ 131 (429)
++.++..+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 9999888776
No 138
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.84 E-value=2e-08 Score=73.40 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=65.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
+...|+.+++|++|++.++++++.+|+++..|..+|.++..+|++++|++.++++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999887765543
No 139
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.8e-08 Score=100.64 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=100.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+..++.+|.+|..|..+|+|++|..+|.++++.+|++ ...++.+|+.+...|+++.|..+|++++...|++.+...-
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 445667788888888888888888888888888888887 7778888888888888888888888888888888888888
Q ss_pred HHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 88 RGAAYLAMG----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 88 la~~~~~~g----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
||.+|...+ ..++|..+..++++..|.+.+++..++.++.....
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 888888775 56788888888888888888888888877755443
No 140
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.84 E-value=9.9e-09 Score=73.87 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=34.5
Q ss_pred HhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212 60 KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (429)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (429)
+.|++++|+..|++++..+|++..+++.+|.+|..+|++++|...+++++..+|+++.++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555444443
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.84 E-value=9.2e-09 Score=74.03 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=62.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
++..|+|++|++.|+++++.+|++..+++.+|.|++..|++++|.+.+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999988887776653
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=98.83 E-value=4.9e-08 Score=93.81 Aligned_cols=137 Identities=17% Similarity=0.079 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCCC
Q 014212 16 ELKALANEAFRAKK---YSQAIDLYSQAI---ELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 16 ~~~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~ 80 (429)
.++..|...+.++. .+.|+..|.+|+ +++|+.+.+|..++.|++.. .+..+|.+..++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44777877776654 467999999999 99999999999999998765 2456889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccC
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~ 160 (429)
++.++..+|.++...++++.|...|++|+.++|+.+.+++..+.+....|+ .++|....+ ++++++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~------------~alrLs 402 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICID------------KSLQLE 402 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHhccC
Confidence 999999999999999999999999999999999999999999999988887 677777777 777777
Q ss_pred CCCCCC
Q 014212 161 PQYSGA 166 (429)
Q Consensus 161 ~~~~~~ 166 (429)
|.-.++
T Consensus 403 P~~~~~ 408 (458)
T PRK11906 403 PRRRKA 408 (458)
T ss_pred chhhHH
Confidence 765444
No 143
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=3.8e-08 Score=89.29 Aligned_cols=122 Identities=12% Similarity=0.199 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
+.++.+..++.+|.+..+.+.|+..|.+.++..|.+...+...+.++..++++++|++.|+.+++.+|.+.++...+|.-
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 44566777888888888888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (429)
|+--++.+-|+.+|++.+++.-.+++...+++.|...-++.+
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 999999999999999999999999999999999998888743
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.81 E-value=1.7e-07 Score=84.03 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 88 (429)
.-.|+.|..+++.|+|..|...|..-++..|++ +.+++.||.+++.+|+|+.|...|..+++..|+. +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 449999999999999999999999999999885 7889999999999999999999999999998875 5789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (429)
|.+...+|+.++|...|+++++..|+.+.+....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999998876544
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.81 E-value=1.5e-07 Score=78.86 Aligned_cols=129 Identities=23% Similarity=0.164 Sum_probs=107.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKG 84 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 84 (429)
...+...+..+...+..++...+...+++.++..|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 3456667777777788999999999999999999998 5678889999999999999999999999987654 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+++|.++..+|++++|+..++. +.-.+-.+.++..+|.++...|+ +++|+..|+
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~ 142 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD--YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 88999999999999999999966 33345556788889999988887 777777665
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.81 E-value=7.2e-08 Score=80.78 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=85.0
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
+-...+.+.+|..++..|++++|+..|++++...|+. ..+.+++|.+++..|++++|+..++.+ .-.+-.+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHH
Confidence 3447788999999999999999999999999988665 457889999999999999999999663 333445678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVK 109 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al 109 (429)
+|.+|..+|++++|+..|++|+
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999885
No 147
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.8e-08 Score=88.87 Aligned_cols=112 Identities=31% Similarity=0.493 Sum_probs=99.6
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
+...-+.+..+...|+.|++.++|..|+..|.+.|+.... ++..|.|+|.|.+.+|+|..|++.+.+|+.++|++.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 3444557888999999999999999999999999997544 467799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
.++++=|.|+.++.++++|..+++..+..+-+...+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999999999999998876554433
No 148
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.80 E-value=1.1e-08 Score=88.10 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=56.8
Q ss_pred ceEEEccCCCCHHHH---HHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHH--HHhhhhCCCeEEEecCCcccccch
Q 014212 223 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL--FAFKCMCPSAIYLSRGNHESKSMN 297 (429)
Q Consensus 223 ~~~v~GDihG~~~~l---~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l--~~lk~~~p~~~~~lrGNhe~~~~~ 297 (429)
++.++||+|+..... ...+.........+.+|++||++++|..+.+..... .......+..+++++||||.....
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 489999999999987 333333222334456999999999999998888765 555566788999999999988765
Q ss_pred h
Q 014212 298 K 298 (429)
Q Consensus 298 ~ 298 (429)
.
T Consensus 82 ~ 82 (200)
T PF00149_consen 82 S 82 (200)
T ss_dssp H
T ss_pred c
Confidence 3
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.80 E-value=4.8e-08 Score=78.46 Aligned_cols=93 Identities=31% Similarity=0.395 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQK 121 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~ 121 (429)
+..++.+|..+...|++++|++.|++++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 5789999999999999999999999999999886 678889
Q ss_pred HHHHHHHHHhHHHHHhhcCCc
Q 014212 122 VKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 122 l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++.++...++ +++|...++
T Consensus 82 ~~~~~~~~~~--~~~A~~~~~ 100 (119)
T TIGR02795 82 LGMSLQELGD--KEKAKATLQ 100 (119)
T ss_pred HHHHHHHhCC--hHHHHHHHH
Confidence 9998887776 666666665
No 150
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.5e-07 Score=85.41 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...++..+..+|....+|++|++..++..++.+.. +..|..+|..+....+++.|+..+.+|++.+|+...+-..
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 45688899999999999999999999999998875 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.++...|+|+.|++.++++++.+|+. +++...+..+|..+|+ .+++.....
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~--~~~~~~fL~ 273 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK--PAEGLNFLR 273 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 9999999999999999999999999987 5688899999999997 444444333
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.6e-07 Score=81.27 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=110.5
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
+.+|.+.-.+...--+.-.+|+.-+|++.+.+-++.-+.|..+|..++.+|...|+|++|.-|++..+-+.|-++-.+-+
T Consensus 114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 45688888888777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 88 RGAAYLAMGK---FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 88 la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
+|.+++-+|. +.-|.++|.++++++|.+..+++.+-.+...+.
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 9999998875 567999999999999988888887766655444
No 152
>PRK09453 phosphodiesterase; Provisional
Probab=98.78 E-value=3e-08 Score=86.53 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=52.4
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCC--------cHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF--------SVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~--------s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++.+++|+||++..+.++++..... ..+.++++||++|+|+. +.+++..+..+ +..+++++||||..
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~GNhD~~ 76 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRGNCDSE 76 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEccCCcch
Confidence 4889999999999988888876332 34569999999999874 46677766544 24689999999975
Q ss_pred c
Q 014212 295 S 295 (429)
Q Consensus 295 ~ 295 (429)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 4
No 153
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.78 E-value=3.2e-08 Score=94.94 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=49.3
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
...+|+.+.++.++|..|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566667777777777777777777777777777777776643 677777777777777777777777765
No 154
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.77 E-value=1.2e-07 Score=79.51 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--
Q 014212 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-- 97 (429)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 97 (429)
|+.|.+.++.....+|.++..+++-|.++..+.++ ++|+.-|+.|+.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 68899999999999999999999999999887554 578888999999999999999999999998875
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 98 ---------FKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 98 ---------~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
|++|..+|++|...+|++......|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 68899999999999999987776665543
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.77 E-value=1.7e-07 Score=90.17 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=103.1
Q ss_pred cccHhHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 014212 8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (429)
..+|..+.++..+|.+++.. .+-.+|.+..++|++++|.|+.++..+|.+....++++.|...|++|+.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 56788888998888888754 345679999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014212 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (429)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (429)
|+.+.+|+..|.+..-.|+.++|.+.+++|++++|.-..+-.
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 999999999999999999999999999999999998765543
No 156
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.76 E-value=7.2e-08 Score=101.77 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 98 (429)
.++.++...|++++|+.++++++...|........+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 44444444455555555555555222222333333344555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCC
Q 014212 99 KEALKDFQQVKKLSPN 114 (429)
Q Consensus 99 ~eA~~~~~~al~~~p~ 114 (429)
++|++.++++...+|+
T Consensus 153 ~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 153 GVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHhcccCcc
Confidence 5555555555555554
No 157
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=1e-07 Score=92.41 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=99.3
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----HhCCCChHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----EIDPRYPKGYY 86 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~ 86 (429)
.+..+.....|..+...|++++|...++++++.+|++..++.. +..+...|++..+.....+++ ..+|....++.
T Consensus 40 ~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 118 (355)
T cd05804 40 ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLG 118 (355)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHH
Confidence 3456667788999999999999999999999999999877665 555555555444444444444 44566666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+|.++..+|++++|...++++++++|+++.++..++.++...++ +++|+..++
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~ 172 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFME 172 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 788888899999999999999999999988888888888877777 677777666
No 158
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.76 E-value=6.5e-09 Score=87.46 Aligned_cols=128 Identities=38% Similarity=0.511 Sum_probs=100.1
Q ss_pred chhhccchhhhhcccchH-HHHH---HHHHhccCcccceecC-eEEEEecCccCCCC-CCccccccccCCC--CCCCCCc
Q 014212 296 MNKIYGFEGEVRSKLSET-FVEL---FAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDG-VKLSDIKTIDRFC--EPPEEGL 367 (429)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~~-~~~~~i~~~~r~~--~~~~~~~ 367 (429)
++..+|+.+++..+++.. .|.. +.++|+.+|+.+++++ .++|.|||+ ++.. ..+++++.+.|.. .....+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g~ 81 (155)
T COG0639 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAGH 81 (155)
T ss_pred hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCccc
Confidence 445567766666666543 4555 9999999999999988 999999999 5543 7788888888875 6777788
Q ss_pred ccccccCCCCC--CCCCCCCCCCCcEEE---------------EEeeccccccCceeecCCeEEEEcCCCCCCC
Q 014212 368 MCELLWSDPQP--LPGRGPSKRGVGLSF---------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCD 424 (429)
Q Consensus 368 ~~~~lw~dp~~--~~~~~~~~~~~~~~~---------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~ 424 (429)
..+.+|++|.. ...|.++++|.+..+ +.|+|+..+.++...+.+..+|+||+++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~w~~~~~g~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~~ 155 (155)
T COG0639 82 THDLLWSDPDGGDRRIWNPGPRGVPRDGGDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155 (155)
T ss_pred cccccCCCCCCCcccccccCCCCCCccccchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEecccccC
Confidence 88889999875 456667666655431 8899999999998888868999999999974
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=1.2e-07 Score=93.33 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=117.7
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
-|.....++..+...+..++|.+.+...+..++..|.....+-..|..+..+|+-++|....+.++..++.+.-+|+-+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (429)
.++..-.+|++|+.+|+.|+.++|+|..++.-++.++.++++.+
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999863
No 160
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.74 E-value=5.9e-08 Score=93.10 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=66.9
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
.+|+++.+|+++|.+|+.+|+|++|+.+|++|++++|++.++ |+++|.+|..+|++++|++++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999865 999999999999999999999999998
No 161
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.73 E-value=1.1e-07 Score=93.96 Aligned_cols=129 Identities=15% Similarity=0.059 Sum_probs=109.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh--HHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY--ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYY 86 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 86 (429)
++++..+..+|..+...|++++|.+.++++++..|++.... ..........++.+.+++.++++++.+|+++ ....
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 35788999999999999999999999999999999987532 2233334556888999999999999999999 8889
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQ--QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+|.++..+|++++|.++|+ ++++..|++.. ...++.++..+|+ .++|..+++
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~--~~~A~~~~~ 394 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD--KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999 68888898766 4599999998888 566666665
No 162
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.72 E-value=4.1e-08 Score=83.26 Aligned_cols=81 Identities=28% Similarity=0.452 Sum_probs=61.3
Q ss_pred eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccch
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~ 303 (429)
+.+++|+||+...+.++++.... .+.++++||++++++.+. ++ ....+++++||||....
T Consensus 2 i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 2 IGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred EEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC-------
Confidence 78999999999999999987653 456999999999998765 11 23468899999997543
Q ss_pred hhhhcccchHHHHHHHHHhccCccccee--c-CeEEEEecCc
Q 014212 304 GEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGL 342 (429)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~-~~~~~vH~gi 342 (429)
+..+|....+ + .+++++||..
T Consensus 62 ------------------~~~~p~~~~~~~~g~~i~v~Hg~~ 85 (155)
T cd00841 62 ------------------FPILPEEAVLEIGGKRIFLTHGHL 85 (155)
T ss_pred ------------------cccCCceEEEEECCEEEEEECCcc
Confidence 3456654433 3 4899999865
No 163
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=1.4e-07 Score=91.32 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=57.5
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----HH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KG 84 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~ 84 (429)
.+|.....+..+|..+..+|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|..+ ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555544322 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 113 (429)
|..+|.++..+|++++|+..|++++...|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 34455555555555555555555554444
No 164
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.70 E-value=6.8e-07 Score=88.36 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGA 90 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 90 (429)
..+......|...+..|+++.|.+.+.++.+..|+....+...|.+..++|++++|..+++++.+..|++. .+....+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 35666778899999999999999999999999999888889999999999999999999999999999875 56666799
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++...|++++|...+++..+..|+++.++..++.++...++ +++|...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d--~~~a~~~l~ 211 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA--WQALDDIID 211 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999988888 777777655
No 165
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.67 E-value=7.6e-08 Score=71.28 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
|..+.++..+|.+|...|+|++|+++|++++++. |..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666666666666666541 112445556666666666666666666666554
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=80.68 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=105.2
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+.+.+..++..|..|-..|-+.-|.--|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+-.++.+.
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
|.+++--|++.-|...+.+-.+-+|++|--.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 9999999999999999999999999998543
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=7.2e-07 Score=86.14 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=106.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 014212 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100 (429)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 100 (429)
-..+...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+++++...|.+...+...|..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34445678999999999999988876 556689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|++..++|+.+.|++...|+.|+.+|..+++ ++.|+....
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLN 292 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALN 292 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHh
Confidence 9999999999999999999999999999999 888887655
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=3.1e-07 Score=86.73 Aligned_cols=133 Identities=19% Similarity=0.103 Sum_probs=77.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+.+-.+++++.|..+-.+|+.++|+++|-+.-.+--+++.+++.++.+|..+.+..+|++++.++..+-|+++..+..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 34445556666666666666666666666666555555566666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
||.+|-+.|+-.+|.+++-...+.-|.+.+....++..+....= +++|+.+++
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf--~ekai~y~e 650 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF--SEKAINYFE 650 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 66666666665555555555555555555555555544433322 344444444
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.1e-07 Score=84.48 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=112.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YAN 53 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~ 53 (429)
..-|.+...+..+|.+++..|++.+|+..|+++.-++|.+... |+-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 3456778889999999999999999999999999988876432 344
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 014212 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (429)
Q Consensus 54 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (429)
-|...+..++++.|+.+-+++|+.+|.+.+++...|.++..+|+.++|+-.|+.|..+.|..-+.+..+-.+|...++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~-- 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR-- 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--
Confidence 455566778888999999999999999999999999999999999999999999999999998888888887777776
Q ss_pred HHHhhcCCc
Q 014212 134 FEEAIAVPE 142 (429)
Q Consensus 134 ~~~a~~~~~ 142 (429)
+.+|.....
T Consensus 384 ~kEA~~~An 392 (564)
T KOG1174|consen 384 FKEANALAN 392 (564)
T ss_pred HHHHHHHHH
Confidence 677665544
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.63 E-value=1.1e-07 Score=79.00 Aligned_cols=99 Identities=14% Similarity=-0.002 Sum_probs=91.3
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
.+.++.....+..|.-+++.|++++|...|+-....+|.+++.|..||.++..+++|++|+..|..|..+++++|...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCc
Q 014212 122 VKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 122 l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.|.|+..+++ .++|...++
T Consensus 111 agqC~l~l~~--~~~A~~~f~ 129 (165)
T PRK15331 111 TGQCQLLMRK--AAKARQCFE 129 (165)
T ss_pred HHHHHHHhCC--HHHHHHHHH
Confidence 9999999998 677777666
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.62 E-value=3e-08 Score=74.68 Aligned_cols=80 Identities=33% Similarity=0.527 Sum_probs=70.4
Q ss_pred HhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212 60 KLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (429)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a 137 (429)
+.|+++.|+..++++++.+|. +...++.+|.+|..+|++++|+..+++ ...+|.+....+.+|.++..+++ +++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHH
Confidence 368999999999999999995 467788899999999999999999999 88889999999999999999998 8888
Q ss_pred hcCCc
Q 014212 138 IAVPE 142 (429)
Q Consensus 138 ~~~~~ 142 (429)
+..++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 172
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.62 E-value=3.5e-07 Score=90.02 Aligned_cols=128 Identities=15% Similarity=0.107 Sum_probs=110.3
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
..|+++......|..+...|+.++|.+.++++++. |.++.....++.+ ..++.+++++.+++.++.+|+++..+..+
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45667889999999999999999999999999994 5566555555554 45999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|.++...+++++|.++|+++++..|++.. +..++.++...|+ .++|..++.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~--~~~A~~~~~ 385 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK--PEEAAAMRR 385 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999765 4578888888887 667766666
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.4e-07 Score=85.34 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
...+.++|.++.+.++|.+|+...+++|+++|+|..++++.|.++..+|+|+.|...|++|++++|.|-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HcCCHHH-HHHHHHHHHHhCC
Q 014212 94 AMGKFKE-ALKDFQQVKKLSP 113 (429)
Q Consensus 94 ~~g~~~e-A~~~~~~al~~~p 113 (429)
+..++.+ ..+.|.+.+..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 7776654 4677777776554
No 174
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.2e-07 Score=88.53 Aligned_cols=144 Identities=20% Similarity=0.136 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
++.-|+--|..++..++++.|+-+-+++++.+|.+..++...|.++.++++.++|+-.|+.|..+.|...+.|-.|-.+|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 45567777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVK-ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 169 (429)
...|++.||...-+.+++.-|.+..++..+| .++..-. ..-++|...++ +++.++|.|.++...
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-~~rEKAKkf~e------------k~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-RMREKAKKFAE------------KSLKINPIYTPAVNL 443 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-hhHHHHHHHHH------------hhhccCCccHHHHHH
Confidence 9999999999999999999999999988886 3332111 11244444444 889999999887554
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=3.4e-07 Score=91.28 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHhhCHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA----------------------------HTKLEEYG 65 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~----------------------------~~~~g~~~ 65 (429)
...|-....+|...|+..+|.....+-++ .|.++..|..+|.+ ....++|+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 34455556666666766666666666666 44445444444433 34468999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
+|..+++.+++++|-....||.+|.+..+++++..|..+|.+++.++|++.++|.+++..+..++++
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 176
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=2.2e-07 Score=95.25 Aligned_cols=133 Identities=22% Similarity=0.241 Sum_probs=112.6
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH------------------------------------H
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------Y 51 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------~ 51 (429)
..++.-+.++-.+|..|..-.+...|..+|++|.++++.++.+ |
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 3456677788888888888888888888888888888776533 4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
..+|..|...+++..|+..|+.|++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+.-+.+..+.+...+|+
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 55677777777888889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhhcCCc
Q 014212 132 LKFEEAIAVPE 142 (429)
Q Consensus 132 ~~~~~a~~~~~ 142 (429)
+.+|+..+.
T Consensus 646 --Ykeald~l~ 654 (1238)
T KOG1127|consen 646 --YKEALDALG 654 (1238)
T ss_pred --HHHHHHHHH
Confidence 666666554
No 177
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=98.57 E-value=2.4e-07 Score=70.28 Aligned_cols=94 Identities=54% Similarity=0.949 Sum_probs=65.5
Q ss_pred HHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q 014212 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVL 201 (429)
Q Consensus 122 l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~ 201 (429)
+..|.....+..|++|+.. +....+.+.......+.+.+.|.|+++....++.+++..|+++|+.++.++.+++..++.
T Consensus 2 l~ec~k~ir~~~FekAI~~-d~~~~s~~e~~d~~~i~Ve~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~ 80 (95)
T PF08321_consen 2 LKECEKLIRRIAFEKAIAV-DEEKKSVSESIDLESIDVEDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILL 80 (95)
T ss_dssp HHHHHHHHHHHHHSHHHHH-HHHHHSTTTS-TTSTT---SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCcccCHHHhcCccceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3456666777779999998 333444555667788899999999999966799999999999999999999999999999
Q ss_pred HHHHHHhhCCCeeee
Q 014212 202 QTREMLRALPSLVDI 216 (429)
Q Consensus 202 ~a~~~l~~~p~~~~~ 216 (429)
.+.++|+.+|+++++
T Consensus 81 ~~~~llk~~PslVeI 95 (95)
T PF08321_consen 81 EAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHTS-SEEEE
T ss_pred HHHHHHHhCcCccCC
Confidence 999999999999874
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=8e-07 Score=89.55 Aligned_cols=110 Identities=16% Similarity=0.085 Sum_probs=94.5
Q ss_pred CcccHhHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRA--------KKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
...+|+.+.++-.++..+... .+..+|.+...+++.+ +|.++.++..+|..+...|++++|...+++|+.
T Consensus 369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456788888888888877554 2345666667776664 777889999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 449 L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 449 LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999 5899999999999999999999999999999999986
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=8.6e-08 Score=70.99 Aligned_cols=67 Identities=25% Similarity=0.400 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---C----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---P----RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
|+.+.++.++|.+|..+|++++|+++|++++.+. + ..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999999762 1 23568999999999999999999999999986
No 180
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.56 E-value=2.7e-06 Score=83.73 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHhCCCChHH-HHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR-AFAHTKLEEYGSAIQDASKAIEIDPRYPKG-YYRRG 89 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la 89 (429)
..+......|...+..|+|++|.+...++-+..+ ++..++.+ +.+..+.|+++.|..+++++.+.+|++..+ ....+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 4556677889999999999999988777665433 34555544 666699999999999999999999987544 34558
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++...|++++|...++++.+.+|+++.++..++.++...++ +++|+..+.
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~a~~~l~ 211 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSSLLDILP 211 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 999999999999999999999999999999999999988887 788886665
No 181
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.52 E-value=6.3e-07 Score=80.24 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=70.6
Q ss_pred ceEEEccCCCCHHHHH-HHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchh---
Q 014212 223 HFTVCGDVHGQFYDLL-NIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK--- 298 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~-~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~--- 298 (429)
++.++||+||++.... +.++.. ..+.+++.||+++ .+.+++..|.++ |..++.++||||.+....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~----~pD~Vl~~GDi~~---~~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~ 70 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLL----QPDLVLFVGDFGN---ESVQLVRAISSL----PLPKAVILGNHDAWYDATFRK 70 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhcc----CCCEEEECCCCCc---ChHHHHHHHHhC----CCCeEEEcCCCcccccccccc
Confidence 4889999999987642 333332 2357999999986 457777777655 345888999999765320
Q ss_pred -h----------------cc------------------------ch-hhhhccc-chHHHHHHHHHhccCcccceecCeE
Q 014212 299 -I----------------YG------------------------FE-GEVRSKL-SETFVELFAEVFCCLPLAHVLNQKV 335 (429)
Q Consensus 299 -~----------------~~------------------------~~-~~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~~ 335 (429)
. ++ +. .++...| -....+.+...++.++.+......|
T Consensus 71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V 150 (238)
T cd07397 71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI 150 (238)
T ss_pred hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence 0 00 00 0223333 2346677778888887444445589
Q ss_pred EEEecCc
Q 014212 336 FVVHGGL 342 (429)
Q Consensus 336 ~~vH~gi 342 (429)
|+.|+++
T Consensus 151 liaH~~~ 157 (238)
T cd07397 151 LLAHNGP 157 (238)
T ss_pred EEeCcCC
Confidence 9999998
No 182
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.51 E-value=3.6e-07 Score=77.77 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=46.6
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++.+++|+||+...+..+++.....+..+.++++||++ +.+++..+..+. ..++.++||||..
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 48899999999987766655544332445799999999 467777776542 2488999999973
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=1e-06 Score=85.07 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
+++...+|.++...++-.+|++.+.++++.+|.+...+...+..+...++++.|+...++|+.+.|++-.+|+.||.+|.
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 014212 94 AMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~ 111 (429)
.+|++++|+..++.+--.
T Consensus 280 ~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 280 QLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHhcCcCC
Confidence 999999999887755443
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=1.1e-06 Score=80.59 Aligned_cols=104 Identities=27% Similarity=0.198 Sum_probs=87.3
Q ss_pred HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 014212 48 AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQ 120 (429)
Q Consensus 48 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 120 (429)
...++..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 66799999999999999999998 5799999999999999999999999999998875 67888
Q ss_pred HHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 121 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
.++.++..+++ .++|...++ ++++..|+...
T Consensus 222 klg~~~~~~g~--~~~A~~~~~------------~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGD--TAKAKAVYQ------------QVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCC--HHHHHHHHH------------HHHHHCcCCHH
Confidence 88888877776 666666666 67776666543
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.46 E-value=1e-05 Score=68.09 Aligned_cols=119 Identities=23% Similarity=0.301 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR 88 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 88 (429)
.+....+.+|+.+...|++.+|...|++++. +...++..+..++.+.+..+++.+|...+++..+.+|. .++.+..+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4456788999999999999999999999986 46678899999999999999999999999999999885 67889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
|.++..+|++.+|...|+.++...|. +++....+..+..+|+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 99999999999999999999999887 4556666777766665
No 186
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.39 E-value=5.6e-07 Score=76.22 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=44.8
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
++.++||+|+..+.+.++++... ..+.++++||++++ .+++..+... .+++++||||....
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~ 62 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAF 62 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccc
Confidence 58999999999999999999873 24569999999993 7777777554 68999999996553
No 187
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.38 E-value=3.5e-06 Score=83.23 Aligned_cols=119 Identities=10% Similarity=-0.017 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
+...|+.-++....+++.++|++.++++++..|+....|..+|+++.++++.+.|...|...++.-|..+..|..|+.+-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 34555566666666666777777777777777777777777777777777777777777776666677677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
...|+.-.|...++++...+|.+...|...-.+....|.
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 666667777777777777777766666555555555444
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.38 E-value=4.8e-06 Score=66.66 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKV 122 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l 122 (429)
.+++.+|.++-.+|+.++|+..|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975443 568999999999999999999999999999898 77788888
Q ss_pred HHHHHHHHhHHHHHhhcC
Q 014212 123 KECEKAVKKLKFEEAIAV 140 (429)
Q Consensus 123 ~~~~~~~~~~~~~~a~~~ 140 (429)
+.++...++ .++|+..
T Consensus 82 Al~L~~~gr--~~eAl~~ 97 (120)
T PF12688_consen 82 ALALYNLGR--PKEALEW 97 (120)
T ss_pred HHHHHHCCC--HHHHHHH
Confidence 888777777 4555543
No 189
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.37 E-value=2.4e-06 Score=84.34 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=119.3
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...|+..+.+--.|..+...|+-++|..+-+.+++.++.+...|.-+|.++...++|++|+.||+.|+.++|+|...|.-
T Consensus 35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 35678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 141 (429)
++.+..++++++-....-.+.+++.|.....|..++..+...+. +..|....
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~--y~~A~~il 166 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE--YKMALEIL 166 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999999999999999999999999888888887 45555443
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=5e-07 Score=92.76 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
...|..+|-.|...+++.+|+..++.|++.+|.+...|..+|.+|...|++..|++.|.+|..++|.+..+.|..|....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 35677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.+|+|.+|+..+...+........+...+++++.+...
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ak 679 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAK 679 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999887777777777777766554
No 191
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.34 E-value=4.1e-06 Score=82.73 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH---------------------------------HHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR---------------------------------AFAH 58 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------------------------------g~~~ 58 (429)
.....|.-.|..+...|+...|...+.+|++.+|++..+|+.- +...
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 3344455556666666666666666666666666665555444 4444
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
..+++.++|+..++.+++..|++...|..+|+++.++++.+.|.+.|...++..|..+..|..++.+....+
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 445555555555555555555555555555555555555555555555555555555555555555544443
No 192
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.32 E-value=1.7e-05 Score=79.62 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
..+++.+|+.|...|++++|+++.++|++..|..+..|...|.++...|++.+|.++++.|..+|+.+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 014212 94 AMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~ 112 (429)
+.|+.++|.+.+..-.+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999998776655
No 193
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.31 E-value=8.7e-07 Score=81.10 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
.-..|.-|+++|+|++|++||.+++..+|-|+-.+.+.|.+|.++.+|..|...+..|+.++..+..++...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
+ ..+|..-++ .+++++|..
T Consensus 180 ~--~~EAKkD~E------------~vL~LEP~~ 198 (536)
T KOG4648|consen 180 N--NMEAKKDCE------------TVLALEPKN 198 (536)
T ss_pred h--HHHHHHhHH------------HHHhhCccc
Confidence 7 566666666 677777774
No 194
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=1.1e-05 Score=85.02 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=101.9
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----------- 78 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 78 (429)
.+.+-.+++.+|.+|-+.|++++|...|+++++.+|+++.+..++|..|... ++++|++++.+|+...
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3455579999999999999999999999999999999999999999999999 9999999999998652
Q ss_pred ---------CCChHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 79 ---------PRYPKG--------------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 79 ---------p~~~~~--------------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
|++.+. +.-+-..|...+++++++..++.+++++|+|..+...++.++.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 333322 2233377888899999999999999999999999999999987
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.30 E-value=4.1e-05 Score=67.97 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=98.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-----------CHHHHHHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-----------EYGSAIQDASKA 74 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~a 74 (429)
..+-...+.+.+|..+++.|++++|+..+++.++..|++ +.+++.+|.+++.+. ...+|+..|+..
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999886 467889999877654 345899999999
Q ss_pred HHhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhH
Q 014212 75 IEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQKVKECEKAVKKL 132 (429)
Q Consensus 75 l~~~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~ 132 (429)
+...|++..+ -+.+|..|.+.|.+..|+.-++.+++..|+.+. ++..+...+..+|..
T Consensus 117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 9999987532 355789999999999999999999999998864 567777777777764
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.28 E-value=2.7e-05 Score=69.43 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY 86 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 86 (429)
.+..+++.|...++.|+|++|+..|+++....|.+ ..+...++.++++.+++++|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988775 57788999999999999999999999999999865 4677
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccc
Q 014212 87 RRGAAYLAMGK--------FKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ 155 (429)
Q Consensus 87 ~la~~~~~~g~--------~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~ 155 (429)
..|.++...=+ ..+|+..|+..+..-|++ +++...+..+...+...+..=|.-+.+++.+..|......
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 77888765422 367999999999999987 4556666666666666544445555666666666666666
Q ss_pred ccccCCC
Q 014212 156 SIEVEPQ 162 (429)
Q Consensus 156 ~l~~~~~ 162 (429)
+++-.|.
T Consensus 193 v~e~y~~ 199 (254)
T COG4105 193 VLENYPD 199 (254)
T ss_pred HHhcccc
Confidence 6655443
No 197
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.5e-05 Score=67.84 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (429)
+-.-|.-++..|+|++|..-|..||.+-|.-+ -.|.+.|.+..++++.+.|+..+.+|++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34568889999999999999999999988643 3688899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 126 EKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
|..+.+ +++|+.-|. +.++.+|....+
T Consensus 178 yek~ek--~eealeDyK------------ki~E~dPs~~ea 204 (271)
T KOG4234|consen 178 YEKMEK--YEEALEDYK------------KILESDPSRREA 204 (271)
T ss_pred HHhhhh--HHHHHHHHH------------HHHHhCcchHHH
Confidence 988866 777777776 788888875433
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.22 E-value=9.2e-05 Score=67.49 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=100.7
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh------------------CHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE------------------EYGSAI 68 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g------------------~~~~A~ 68 (429)
.+-...+.+.+|.++++.+++++|+..+++.++..|++ +.+++.+|.+++.++ ...+|+
T Consensus 65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 34555678999999999999999999999999998886 567889998865543 135788
Q ss_pred HHHHHHHHhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 014212 69 QDASKAIEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKA 128 (429)
Q Consensus 69 ~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~ 128 (429)
+.|++.++..|+...+ -+..|..|.+.|.+..|+.-++.+++..|+. ++++..+...+..
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 9999999999986421 3456888999999999999999999998875 5677888888877
Q ss_pred HHhH
Q 014212 129 VKKL 132 (429)
Q Consensus 129 ~~~~ 132 (429)
+|..
T Consensus 225 lg~~ 228 (243)
T PRK10866 225 LQLN 228 (243)
T ss_pred cCCh
Confidence 7763
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.20 E-value=4.8e-05 Score=76.45 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=99.1
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHhC----
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEID---- 78 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~---- 78 (429)
..-.+....+-..|..+++.|++++|...|+..++.+|++...+..+..+..... +.+.....|+......
T Consensus 32 ~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 32 KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc
Confidence 3445667788889999999999999999999999999999999888888773222 2222222222211000
Q ss_pred --------------------------------------------C-------------------------------CC--
Q 014212 79 --------------------------------------------P-------------------------------RY-- 81 (429)
Q Consensus 79 --------------------------------------------p-------------------------------~~-- 81 (429)
| ..
T Consensus 112 ~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 112 APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch
Confidence 0 01
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212 82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 82 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 141 (429)
..+++.+|+.|...|++++|+++.++|++..|..++.+...|.++...|+ +.+|....
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--~~~Aa~~~ 251 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--LKEAAEAM 251 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 12568889999999999999999999999999999999999999999998 55555543
No 200
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.20 E-value=5.7e-07 Score=82.44 Aligned_cols=110 Identities=37% Similarity=0.517 Sum_probs=100.9
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
+.+.+.-+.+.-....|..++..|.+++|++.|..+++++|..+..+..++.++.++++...|+..|..|+.++|+....
T Consensus 105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ 184 (377)
T KOG1308|consen 105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG 184 (377)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc
Confidence 34445556666777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
|-..|.+...+|++++|..++..+++++-+
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998754
No 201
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.20 E-value=1.1e-05 Score=75.51 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.+.+.......++.+.++++.|.+.++..-+.+.+..-....-+.+.+..| ++++|...|+......+.++..+..+|
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 456677778889999999999999999988777766555555555655555 599999999998877788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.++..+|++++|.+.+++++..+|++++++.++..+...+|+
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988888776
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.20 E-value=4.6e-06 Score=54.12 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
.+++.+|.+|..+|++++|+..|+++++.+|+++.++..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555555555555555555555555555555555555544
No 203
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.18 E-value=8.7e-06 Score=64.42 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKECE 126 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~l~~~~ 126 (429)
+-.-|.++...|+.+.|++.|.+++.+-|..+.+|.+.+.++.-+|+.++|+..+++|+++..... .++...+.++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445688889999999999999999999999999999999999999999999999999999986543 3567778888
Q ss_pred HHHHhHHHHHhhcCCc
Q 014212 127 KAVKKLKFEEAIAVPE 142 (429)
Q Consensus 127 ~~~~~~~~~~a~~~~~ 142 (429)
+..++ .+.|..-++
T Consensus 126 Rl~g~--dd~AR~DFe 139 (175)
T KOG4555|consen 126 RLLGN--DDAARADFE 139 (175)
T ss_pred HHhCc--hHHHHHhHH
Confidence 88887 455555444
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.17 E-value=1.9e-06 Score=52.29 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=20.6
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.17 E-value=4.2e-06 Score=54.30 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45556666666666666666666666666666666665553
No 206
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.16 E-value=5.8e-06 Score=73.88 Aligned_cols=70 Identities=9% Similarity=0.128 Sum_probs=55.2
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++.+++|+||++..+.++++..... ..+.+|++||++++|+..-++..++..+.. .+..++.++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~-~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPET-GADAIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 5899999999999999998865322 245699999999999877777777766643 235688999999975
No 207
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.14 E-value=8.5e-06 Score=67.26 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=40.5
Q ss_pred eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcH--HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~--e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+.+++|+||+.. .+ . ....+.++++||++++|..+. +.+.++..++ . ..+++++||||..
T Consensus 2 i~~isD~H~~~~----~~---~-~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~ 63 (135)
T cd07379 2 FVCISDTHSRHR----TI---S-IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLT 63 (135)
T ss_pred EEEEeCCCCCCC----cC---c-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCc
Confidence 789999999987 11 1 123456999999999986532 3445554442 2 2367899999954
No 208
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=9.3e-06 Score=76.01 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS--Q----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------ 80 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 80 (429)
.+..+...|+.|...++|++|.+.|.++.+..- . -+..+...+.++.+. ++++|++++++|+.+.-.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 345555666666666777777777777655321 1 134455555555444 677777777777665321
Q ss_pred ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 YPKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSP--ND----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 ~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
-+.++..+|.+|... |++++|+++|++|.++.. +. ......++.++..+++ +++|+..++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~--y~~A~~~~e 179 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR--YEEAIEIYE 179 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 134566667777666 677777777777766521 11 2244555555555554 666666555
No 209
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=3.2e-05 Score=66.76 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
+-...|..+.+...+|..+...|+|+.|.+.|+..++++|....+..|+|..++--|+++-|.+.+.+-.+.||++|
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888887765
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=3.8e-05 Score=68.18 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----C--CChHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----P--RYPKGYY 86 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~ 86 (429)
....+.+++.+...|+|.-.+..+.++++.+ |.++.....+|.+-++.||.+.|..+|+++-+.. . .+.-+.-
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4567788899999999999999999999998 6678888899999999999999999999654332 2 2345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+.+.+|..++++.+|...|.+++..+|.++.+..+.+.|+..+|+ ...|+...+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~--l~DAiK~~e 310 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK--LKDALKQLE 310 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--HHHHHHHHH
Confidence 888999999999999999999999999999999999999999998 677777766
No 211
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=5.1e-06 Score=50.41 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH
Q 014212 36 LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69 (429)
Q Consensus 36 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 69 (429)
+|++|++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=4.8e-05 Score=64.13 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=61.3
Q ss_pred cccHhHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHH
Q 014212 8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGS 66 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~ 66 (429)
..+|.+++.+.+-|.++....+ +++|+.-|++|+.++|+...+++++|.+|..++. |++
T Consensus 19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3578899999999998876643 4668888999999999999999999999988764 778
Q ss_pred HHHHHHHHHHhCCCChHHHHH
Q 014212 67 AIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~ 87 (429)
|.++|++|...+|++...+-.
T Consensus 99 A~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 99 ATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999988654433
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=4.2e-05 Score=68.86 Aligned_cols=102 Identities=29% Similarity=0.336 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKE 124 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~ 124 (429)
.++.|.-+++.|+|..|.+.|..-+...|+. +.++|.||.+++.+|++++|...|..+.+-.|++ |++++.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999985 6799999999999999999999999999988765 678999999
Q ss_pred HHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
+...+++ .++|...++ ++++-.|+...+
T Consensus 224 ~~~~l~~--~d~A~atl~------------qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGN--TDEACATLQ------------QVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcC--HHHHHHHHH------------HHHHHCCCCHHH
Confidence 9999888 566666665 666666665443
No 214
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00018 Score=66.54 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--------------HhCC-
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI--------------EIDP- 79 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------------~~~p- 79 (429)
....-+|.+++..|+|++|+..|+-+.+.+.-++..+.++|.|++-+|.|.+|.....+|- +++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 3444578999999999999999999999877789999999999999999999987766542 2211
Q ss_pred -----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 80 -----------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 80 -----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
+..+-...||.+++..-.|.+|+..|.+.+.-+|+.......++.|+..+.-+
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 22344566777788778889999999999999998888888888888777654
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.3e-05 Score=48.69 Aligned_cols=32 Identities=38% Similarity=0.844 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 216
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=97.98 E-value=2.3e-05 Score=63.55 Aligned_cols=66 Identities=27% Similarity=0.450 Sum_probs=48.3
Q ss_pred EEccCCCCHHHHHHHH--HHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 226 VCGDVHGQFYDLLNIF--ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 226 v~GDihG~~~~l~~~l--~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
++||+|+......... .... ....+.++++||+++.+....+...............++++.||||
T Consensus 2 ~~gD~h~~~~~~~~~~~~~~~~-~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 2 VISDIHGNLEALEAVLEAALAA-AEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred eeecccCCccchHHHHHHHHhc-ccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 6899999988887754 2222 2234569999999999998877666533333445688899999999
No 217
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.96 E-value=6.6e-05 Score=70.22 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 14 AEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
.-.....|.+.+..| .+.+|.-.|++..+..+.++..+..+|.|++++|+|++|.+.+++++..+|.+++++.+++.+
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334444455555556 699999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 014212 92 YLAMGKF-KEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 92 ~~~~g~~-~eA~~~~~~al~~~p~~~~~~ 119 (429)
...+|+. +.+.+++.+.-..+|+++-..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9999998 667778888888999988654
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.95 E-value=1.6e-05 Score=48.24 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
.+|+++|.++..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666677777777777777777777776665
No 219
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.93 E-value=3.4e-05 Score=66.82 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.1
Q ss_pred eEEEccCC-CCHH-----HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 224 FTVCGDVH-GQFY-----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 224 ~~v~GDih-G~~~-----~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+.|++|.| |.-. .+.++++. ..-+.++.+||+++ .+++.++..+. ..++.++||||..
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~ 65 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDEN 65 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCcc
Confidence 78999999 5433 35555543 22356999999987 77777775552 2588999999963
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0001 Score=66.71 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=108.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----------Hh
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----------EI 77 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------~~ 77 (429)
+.+|.+...+..+|.+|+...+|..|.++|++.-.+.|......+..+..+++.+.+..|+....... ++
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45676778888999999999999999999999999999988888888888888888877765443321 11
Q ss_pred --------------------CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Q 014212 78 --------------------DP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE 135 (429)
Q Consensus 78 --------------------~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 135 (429)
-| +.+....+.|.+.++.|++++|++-|+.|++...-++-.-++++.++...++ +.
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q--ya 195 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ--YA 195 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh--HH
Confidence 13 3566788899999999999999999999999999999999999999988887 66
Q ss_pred HhhcCCc
Q 014212 136 EAIAVPE 142 (429)
Q Consensus 136 ~a~~~~~ 142 (429)
.|+.+..
T Consensus 196 sALk~iS 202 (459)
T KOG4340|consen 196 SALKHIS 202 (459)
T ss_pred HHHHHHH
Confidence 6766543
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.93 E-value=0.00024 Score=58.00 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQ 120 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 120 (429)
.+..++.-|...++.|+|++|++.|+......|-. ..+.+.++.+|+..+++++|+..+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46778899999999999999999999999998864 578999999999999999999999999999999875 566
Q ss_pred HHHHHHHHHH
Q 014212 121 KVKECEKAVK 130 (429)
Q Consensus 121 ~l~~~~~~~~ 130 (429)
..|.++....
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 222
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=2.9e-05 Score=47.00 Aligned_cols=33 Identities=33% Similarity=0.780 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
++|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455556666666666666666666666665553
No 223
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.91 E-value=0.00027 Score=75.03 Aligned_cols=126 Identities=11% Similarity=-0.007 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---C---------
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---P--------- 79 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p--------- 79 (429)
...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+..++...|+.++|.+.|+...+.. |
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 445666666666666666666666665542 232 2233334444444444444444444443211 1
Q ss_pred ----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212 80 ----------------------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (429)
Q Consensus 80 ----------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a 137 (429)
.+...|..+..++...|+++.|...+++.+++.|++...+..+..++...|+ +++|
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~--~~~A 547 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR--QAEA 547 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC--HHHH
Confidence 1345577777777778888888888888888888888888888888888887 6777
Q ss_pred hcCCc
Q 014212 138 IAVPE 142 (429)
Q Consensus 138 ~~~~~ 142 (429)
...++
T Consensus 548 ~~v~~ 552 (697)
T PLN03081 548 AKVVE 552 (697)
T ss_pred HHHHH
Confidence 77655
No 224
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=2.7e-05 Score=71.86 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=100.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 100 (429)
..+...++|..|+..++-.+..+.... ..-..+|.|++.+|+|++|+..|..+.+.+..+++.+.+||.++.-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456778999999999988876654433 5667789999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH----------------HHHHhhcCCccccccccccccccccccCCCCC
Q 014212 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL----------------KFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------------~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
|...-.+| |++|--...+-.+.-.+++. ....|-..|-+..+.+|..+|.+++.-+|++.
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 98765554 44443222111111111111 12233334445566677777778888888887
Q ss_pred CC
Q 014212 165 GA 166 (429)
Q Consensus 165 ~~ 166 (429)
+.
T Consensus 186 al 187 (557)
T KOG3785|consen 186 AL 187 (557)
T ss_pred hh
Confidence 65
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.84 E-value=7.4e-05 Score=69.26 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD----- 117 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~----- 117 (429)
..++.+++..+.+..++.+++.+.+..+.+....+ .++..+|.++..++.++++++.|++|++...++.+
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 35678888888888888888888888887754333 56778999999999999999999999998755433
Q ss_pred -HHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHH
Q 014212 118 -AAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYA 196 (429)
Q Consensus 118 -~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~ 196 (429)
+...++.++.++++ +++|..+.. ++.++-..+....+... ...-.+..|.-.++..+.+. ++
T Consensus 163 qvcv~Lgslf~~l~D--~~Kal~f~~------------kA~~lv~s~~l~d~~~k-yr~~~lyhmaValR~~G~Lg--dA 225 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKD--YEKALFFPC------------KAAELVNSYGLKDWSLK-YRAMSLYHMAVALRLLGRLG--DA 225 (518)
T ss_pred ehhhhHHHHHHHHHh--hhHHhhhhH------------hHHHHHHhcCcCchhHH-HHHHHHHHHHHHHHHhcccc--cH
Confidence 45667777777777 777777766 55555444432222221 11112333444455555554 37
Q ss_pred HHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHc
Q 014212 197 FQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELN 244 (429)
Q Consensus 197 ~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~ 244 (429)
.+.|+++.++-....+-.-.. .-+.++||||....++.+.|...
T Consensus 226 ~e~C~Ea~klal~~Gdra~~a----rc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQA----RCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHH----HHHHHHHHHHHhcccHhHHHHHH
Confidence 889999988877655432111 12677899998888888877653
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00019 Score=70.57 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
...++.--+.+...++|++|++...+.+...|++..+....-.|+.+.++|++|+...++-......+ ...+..|.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 36777777888899999999999999999999999999988899999999999985443332222122 22268888999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++++.++|+..++ -+++.+..++...+.+...+++ |++|...|+
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~ 134 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQ 134 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 9999999998888 4566667778888888888887 777777665
No 227
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.83 E-value=0.00032 Score=74.44 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAY 92 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 92 (429)
...+..+...|.+.|++++|.+.|++. .+.+...|..+...|.+.|++++|++.|++..+.. .-+...+..+..++
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555666666677777776666653 23455666666666777777777777666665432 11344566666666
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+.|++++|.+.+..+++.. +.+..++..+...+...|+ +++|...++
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--~~~A~~vf~ 384 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--MEDARNVFD 384 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--HHHHHHHHH
Confidence 66666666666666666654 3344455555555555555 555555544
No 228
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=4.9e-05 Score=46.00 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
.+|+.+|.+++.+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 229
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00014 Score=68.10 Aligned_cols=107 Identities=23% Similarity=0.207 Sum_probs=80.7
Q ss_pred cHhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212 10 SVSRAEELKALANEAFRA-KKYSQAIDLYSQAIELNS--QN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (429)
....+..+..+|..|... |++++|+++|++|++... +. ...+..+|.++.++|+|++|++.|+++....-++
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 344567888899999888 999999999999998622 11 3456788999999999999999999988753221
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 82 ------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 82 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
...++..+.|+...|+...|...+++....+|...
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 13456778899999999999999999999988653
No 230
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=3.4e-05 Score=67.52 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
..-|..++...+|..|+.+|.+||.++|..+..|-+.|.+|.++.+++.+.....+|+++.|+...+++.++.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34577788888999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHhhcCCc
Q 014212 132 LKFEEAIAVPE 142 (429)
Q Consensus 132 ~~~~~a~~~~~ 142 (429)
|.+|+....
T Consensus 94 --~~eaI~~Lq 102 (284)
T KOG4642|consen 94 --YDEAIKVLQ 102 (284)
T ss_pred --ccHHHHHHH
Confidence 666666544
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.80 E-value=0.00083 Score=56.07 Aligned_cols=97 Identities=26% Similarity=0.278 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQDAS 72 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (429)
..+...|......++.+.+++.+++++.+...+ ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 445566777788899999999999999863211 2345667788889999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
+++..+|-+-.+|..+-.+|..+|+..+|+..|+++.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988653
No 232
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.79 E-value=6.8e-05 Score=68.46 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred ceEEEccCCCCH------HHHHHHHHHcCCCCCCCCeEEccccccC-------CCCcHHHHHHHHHhhhhCCCeEEEecC
Q 014212 223 HFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDR-------GSFSVEVILTLFAFKCMCPSAIYLSRG 289 (429)
Q Consensus 223 ~~~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGD~vdr-------G~~s~e~~~~l~~lk~~~p~~~~~lrG 289 (429)
++.+++|+|... ..+.+.++... ...+.++++||++|. .+...+++.++..++. .+-.|++++|
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~--~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-~g~~v~~v~G 78 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEA--RQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-SGVPCYFMHG 78 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 478999999542 23445554322 234569999999985 2335677777777753 3357999999
Q ss_pred Ccccc
Q 014212 290 NHESK 294 (429)
Q Consensus 290 Nhe~~ 294 (429)
|||..
T Consensus 79 NHD~~ 83 (241)
T PRK05340 79 NRDFL 83 (241)
T ss_pred CCchh
Confidence 99974
No 233
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.78 E-value=2.1e-05 Score=67.41 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=46.2
Q ss_pred eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+.+++|+|+........+...-.....+.+++.||+++++..+..+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 35789999988766555422112234556999999999987765544 2222 23456799999999986
No 234
>PLN03077 Protein ECB2; Provisional
Probab=97.75 E-value=0.00074 Score=73.45 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=38.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGK 97 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~ 97 (429)
+-..|.+.|+.++|...|++. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-.++...|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence 334444455555554444443 233444444444455555555555555544432 222 2223333334444455
Q ss_pred HHHHHHHHHHHH
Q 014212 98 FKEALKDFQQVK 109 (429)
Q Consensus 98 ~~eA~~~~~~al 109 (429)
+++|...|+...
T Consensus 605 v~ea~~~f~~M~ 616 (857)
T PLN03077 605 VTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 235
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00028 Score=69.41 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------
Q 014212 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (429)
Q Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 78 (429)
+..|.++++.+..++|+..++ -.++.+..+....|.+++++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999988 4577777788899999999999999999999875322
Q ss_pred --------C---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHHHh
Q 014212 79 --------P---R-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PND--------PDAAQKVKECEKAVKK 131 (429)
Q Consensus 79 --------p---~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~--------~~~~~~l~~~~~~~~~ 131 (429)
| + ..+.+|+.|.++...|+|.+|++.+++|+++. -.+ ..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 2 2 44678999999999999999999999995542 111 2256677778888887
Q ss_pred HHHHHhhcCCc
Q 014212 132 LKFEEAIAVPE 142 (429)
Q Consensus 132 ~~~~~a~~~~~ 142 (429)
-++|...|.
T Consensus 240 --t~ea~~iy~ 248 (652)
T KOG2376|consen 240 --TAEASSIYV 248 (652)
T ss_pred --hHHHHHHHH
Confidence 566666544
No 236
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.73 E-value=6.8e-05 Score=65.49 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=44.9
Q ss_pred eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-HHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-VEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
+.+++|+||.+..+.. ..... ...+.+|+.||++++|... .+.+..+.+ .+..++.++||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~-~~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~~ 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKA-EEADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPEI 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhc-cCCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHHH
Confidence 4678999999988876 22221 2345699999999999763 333333332 24568999999997643
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.71 E-value=0.00093 Score=58.75 Aligned_cols=131 Identities=29% Similarity=0.368 Sum_probs=94.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHhCC---CChHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDP---RYPKGY 85 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~ 85 (429)
.+.....+...+..+...+++..|+..+.+++...+.+.......+. ++...|+++.|...+.+++...| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 45556677777888888888888888888888877776555555555 78888888888888888877666 355566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++..+...+++++|+..+.+++...+. .......++..+...+. +..|+..+.
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~ 226 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK--YEEALEYYE 226 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc--HHHHHHHHH
Confidence 66666777788888888888888888888 57777777777666553 344444433
No 238
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00013 Score=70.07 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQA-IELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIE------ 76 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------ 76 (429)
+.+.++...++.++..|+|.+|.+.+... +...|. ..-+|.++|.++++++.|..+...|.+|++
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999887653 222333 344678999999999999999999999996
Q ss_pred ---hCC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 77 ---IDP---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 77 ---~~p---------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
+.| ..-+..|+.|..|...|+.-.|.++|.++......+|..|..++++.....+.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK 385 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 112 23568999999999999999999999999999999999999999998776543
No 239
>PLN03077 Protein ECB2; Provisional
Probab=97.67 E-value=0.0011 Score=72.06 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR 88 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 88 (429)
+...|..+...|.+.|+.++|++.|++..+. .|+... +..+-.++.+.|++++|.+.|+...+..+- +...|..+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 4556666666666666666666666665542 344332 333334455555555555555555432211 22334444
Q ss_pred HHHH--------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Q 014212 89 GAAY--------------------------------LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136 (429)
Q Consensus 89 a~~~--------------------------------~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 136 (429)
..++ ...++.+.|....+++++++|+++..+..++.++...|+ +++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~--~~~ 709 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK--WDE 709 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC--hHH
Confidence 4444 444555555555556677778888888888888877777 555
Q ss_pred hhcCC
Q 014212 137 AIAVP 141 (429)
Q Consensus 137 a~~~~ 141 (429)
|....
T Consensus 710 a~~vr 714 (857)
T PLN03077 710 VARVR 714 (857)
T ss_pred HHHHH
Confidence 55543
No 240
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.66 E-value=0.00012 Score=67.96 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCceEEEccCCCC----HHHHHHHHHHcCCCCCCCCeEEccccccCC--CCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 221 GKHFTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFVDRG--SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 221 ~~~~~v~GDihG~----~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG--~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+.++..++|+|.. ...+.++++..... ..+-+++.||++|.+ ....++...+..|+... .++.+.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQ-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhc-CCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 3568999999976 45566666654322 335689999999954 33345666777776533 499999999964
No 241
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.66 E-value=0.0028 Score=69.44 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRR 88 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 88 (429)
...+..+...+.+.|++++|.+.+.+..+. .|+ ...|..+..+|.+.|++++|.+.|+...+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 344555555555666666666666555432 232 3444555555555566666666555555544 2344455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~ 111 (429)
...|.+.|++++|+..|.+..+.
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555543
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0033 Score=57.36 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH--------------------
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK-------------------- 73 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------- 73 (429)
.+.-+..+......|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344566777889999999999999999999999999999999999999999877544333
Q ss_pred --------------HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Q 014212 74 --------------AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK 130 (429)
Q Consensus 74 --------------al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~ 130 (429)
.+..+|++.++-+.+|..+...|+.++|.+.+-..++.+- ++..+...+-.+...++
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2344788999999999999999999999999988888754 34556666666665555
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.60 E-value=0.00025 Score=65.89 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----C---
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----Y--- 81 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~--- 81 (429)
+++..+|+++...+.|++++++|++|++...++ ..++..+|..+.++.|+++|+.+..+|.++-.. +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 566779999999999999999999999874432 356889999999999999999999999887432 2
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.-+.+.++.++..+|+..+|.++++.|.++. |-......-++.+|+..++ .+.|+..|+
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd--~e~af~rYe 270 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD--LERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc--HhHHHHHHH
Confidence 2357889999999999999999999998874 2234455667777777776 555666555
No 244
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=3.9e-05 Score=72.16 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----C-
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----R- 80 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~- 80 (429)
..-.++-++|+.|+-.|+|++|+..-+.-+++... .-.++.++|.|+.-+|+++.|+++|++++.+.- .
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 34456778888999999999999887776665433 246788999999999999999999998776532 2
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
-+...|.||..|.-..++.+|+.++++-+.+..+ ...+.+.++..+..++. -++|+.+.+
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--h~kAl~fae 339 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--HRKALYFAE 339 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3456788999999999999999999998877543 23466677777777776 455555444
No 245
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.00027 Score=68.64 Aligned_cols=108 Identities=25% Similarity=0.277 Sum_probs=98.2
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+-|+.++.....|+..+..+.+..|+..|.++++..|.....+.+++.++++. |+.-.|+..+..|++++|....+|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 45778888889999999999999999999999999999999999999999886 577899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
+.|+.++..++++.+|+++...+....|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999999887777777554
No 246
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.58 E-value=0.00027 Score=66.71 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC------
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------ 79 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------ 79 (429)
..-.++.++|+++.-.|+++.|+++|++++.+. ...+...+.+|..|.-+.++++|++++++-+.+..
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344678899999999999999999999987642 22466788999999999999999999999776642
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHHh
Q 014212 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PN-DPDAAQKVKECEKAVKK 131 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~ 131 (429)
....+++.||.+|..+|..++|+.+.++.++.. |. ...+..++......+|.
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 246789999999999999999999988888764 22 22345555555555554
No 247
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.57 E-value=3.1e-05 Score=74.53 Aligned_cols=118 Identities=17% Similarity=0.091 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH
Q 014212 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI 270 (429)
Q Consensus 191 l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~ 270 (429)
+....+..++..+.+++..+|+...+........+.++|.||++.|+.++++.. |.....|++-|++++++.+..+.+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence 445668889999999999999988777666667899999999999999999864 445567999999999999999999
Q ss_pred HHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc
Q 014212 271 LTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310 (429)
Q Consensus 271 ~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~ 310 (429)
..+...+...|+...+.|++||+-.+...++|..+....+
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPE 132 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCc
Confidence 9999999999999999999999999999999987776666
No 248
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.0013 Score=67.92 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=93.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 101 (429)
......++|.+|+....+.++..|+...+...-|..+.++|+.++|..+++..-...+++-..+--+-.+|..++++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 44567789999999999999999999999999999999999999999887777777778888888889999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
...|++++..+|+ .+....+-.++.+.+.+
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 9999999999999 66666666666555554
No 249
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.54 E-value=0.00017 Score=64.90 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=48.9
Q ss_pred ceEEEccCCCCHH----HHHHHHHHcCCCCCCCCeEEccccccCCCCcH-HHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 223 HFTVCGDVHGQFY----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-EVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 223 ~~~v~GDihG~~~----~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~-e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
++.+++|+|.... .+.++++..... ..+.+++.||++|.+.... .+..++..+. .+..++++.||||...
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINAL-KPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYYS 77 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhcc-CCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCccccc
Confidence 5889999998643 556666554322 2346889999999988765 5555555443 3456899999999754
No 250
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.51 E-value=0.00027 Score=60.62 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
.+.++++||++++|..+.. +..+..+ +..+++++||||....
T Consensus 43 ~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 43 DDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred CCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 4679999999999986644 4444333 4568999999997644
No 251
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.49 E-value=0.0052 Score=58.04 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGA 90 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 90 (429)
..+......|..-+..|+|.+|.....++-+..+....++..-+.+--++||++.|-.++.++-+..++ ...+...++.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345566677888888999999999999998888888888888899999999999999999999998443 4567788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 140 (429)
+...+|+++.|.....++++..|.+++++.....++...|. +.....+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~--~~~ll~~ 209 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA--WQALLAI 209 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc--HHHHHHH
Confidence 99999999999999999999999999999999999999887 4444433
No 252
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.49 E-value=0.0023 Score=60.35 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
.++......+..+...|++++|.+..+.+++..-+.. ....++ ..+.++...-++..++.+...|+++..+..||..
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 3466777888999999999999999999999765544 333333 3467888999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
+.+.+.+.+|..+|+.|++..|+. ..+..++.++.++++.
T Consensus 338 ~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~ 377 (400)
T COG3071 338 ALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCCh
Confidence 999999999999999999998875 4467788888888773
No 253
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00099 Score=60.46 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=79.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
.+.+..+|++|++.+.--.+.+|.+...+..+|.||+...+|..|.+||++.-.+.|......+..|..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 014212 103 KDFQQV 108 (429)
Q Consensus 103 ~~~~~a 108 (429)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 765543
No 254
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.45 E-value=0.0029 Score=69.34 Aligned_cols=127 Identities=14% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYR 87 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 87 (429)
+...|..+...|.+.|++++|++.|++..+.. ..+...|..+..++.+.|++++|.+.+.+.... .| +...|..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 34556666666777777777777777665432 123556666777777777777777777776542 33 3456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+-.+|.+.|++++|.+.|++..+.+ +.+...+..+...+...++ +++|+.++.
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~--~deAl~lf~ 638 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD--WDFALSIYD 638 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 6677777777777777777777665 3345556666666666555 556665554
No 255
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.44 E-value=0.00027 Score=42.68 Aligned_cols=32 Identities=34% Similarity=0.774 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34555555555566666666666655555553
No 256
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.43 E-value=0.0077 Score=47.08 Aligned_cols=93 Identities=23% Similarity=0.326 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------CC
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DP 79 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p 79 (429)
..|..-+..|-|++|...+++|++..-. ++..+-.|+.++..+|+|++++....+++.. +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 3455667789999999999999986422 3455677889999999999999888888753 44
Q ss_pred CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 80 RY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 80 ~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
+. ..+-++.|.++..+|+.++|+..|+++-++
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43 345688999999999999999999998775
No 257
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.38 E-value=0.0014 Score=43.90 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
+.+|.+|..++++|+|++|..+.+.+++.+|+|..+......+...+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999998877766654443
No 258
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.37 E-value=0.00048 Score=56.23 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=38.4
Q ss_pred EEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 226 VCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 226 v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
|++|.||..+.+.++.... ...+.++++||+. .+++..+..++ +..++.++||||
T Consensus 2 viSDtH~~~~~~~~~~~~~---~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 2 VISDTESPALYSPEIKVRL---EGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred eeccccCccccchHHHhhC---CCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 6899999977777766642 2345699999973 34555555541 234788999999
No 259
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0011 Score=59.09 Aligned_cols=107 Identities=18% Similarity=0.294 Sum_probs=94.3
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (429)
.|.++.....+|...++.||-+.|..+++++-+.+ ........+.+.++...+++.+|...+.+.+..||.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 46777888999999999999999999999665432 224556778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
+-.+.|.|..-+|+..+|++..+.++...|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999753
No 260
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.35 E-value=0.0004 Score=41.93 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 79 (429)
.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455566666666666666666666666555
No 261
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.34 E-value=0.00095 Score=60.78 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=72.8
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
.......+..-...|....+.|+.++|...|+.|+++.|+++.++..+|......++.-+|-++|-+|+.++|.+.+++.
T Consensus 109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 33444556666777888889999999999999999999999999999999998889999999999999999999999988
Q ss_pred HHHHH
Q 014212 87 RRGAA 91 (429)
Q Consensus 87 ~la~~ 91 (429)
+.+..
T Consensus 189 nR~RT 193 (472)
T KOG3824|consen 189 NRART 193 (472)
T ss_pred hhhcc
Confidence 87643
No 262
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0094 Score=52.46 Aligned_cols=101 Identities=27% Similarity=0.249 Sum_probs=55.0
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C-C-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh--
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN----S-Q-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-- 82 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p-~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 82 (429)
.+.++.+..-|+.|--.++|..|=..|.++.+.. . . -+..|...+.||.+. +.++|++++++++++..+-.
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHH
Confidence 3444555555666666666666666666665431 1 1 133444444444333 66666666666666654432
Q ss_pred ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 014212 83 ----KGYYRRGAAYLAM-GKFKEALKDFQQVKKLS 112 (429)
Q Consensus 83 ----~~~~~la~~~~~~-g~~~eA~~~~~~al~~~ 112 (429)
..+..+|.+|..- .++++|+.+|++|-+..
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2234566666543 66666666666666543
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.31 E-value=0.0072 Score=52.94 Aligned_cols=128 Identities=24% Similarity=0.302 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
........+..+...+++..+...+..++. ..+.....+...+..+...+++..|+..+.+++...+.........+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 356778888999999999999999999997 788889999999999999999999999999999988887666666777
Q ss_pred -HHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 91 -AYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 91 -~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++...|++++|...+.+++...|. ........+..+...++ +..++..+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~ 191 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR--YEEALELLE 191 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC--HHHHHHHHH
Confidence 899999999999999999887773 33334344333223333 444444443
No 264
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.30 E-value=0.00053 Score=62.51 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=46.1
Q ss_pred eEEEccCCCCH------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 224 FTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 224 ~~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+.++.|+|..+ ..+.++++..... ..+.+++.||+++.++.+.+++..+.++ .+..++++.||||..
T Consensus 2 i~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 2 IAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred EEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 67889999653 2244455544322 2456999999999877677766666553 345689999999964
No 265
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.30 E-value=0.0044 Score=52.58 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=87.5
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
..-..++..+..+|+..+..+++..|...+++..+.+|. .+.....+|.++..+|++.+|...|+.++...|+ +.+.
T Consensus 118 G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar 196 (251)
T COG4700 118 GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQAR 196 (251)
T ss_pred cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHH
Confidence 334456778899999999999999999999999999887 4677788999999999999999999999999885 6778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
...+..+.++|+.++|..-+....+
T Consensus 197 ~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 197 IYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8899999999999888776655443
No 266
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.0058 Score=59.01 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
-+...|...|.--..++++..|...+++||..+..+...|...+.+-++.+....|.+.+.+|+.+-|.--..|+..-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34566777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
-..+|+..-|.+.|++-++..|+... |...-. ..+...+.+.|...|+
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqa-W~sfI~--fElRykeieraR~IYe 198 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQA-WLSFIK--FELRYKEIERARSIYE 198 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHH-HHHHHH--HHHHhhHHHHHHHHHH
Confidence 99999999999999999999998643 333322 2333334666666666
No 267
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.26 E-value=0.0011 Score=57.16 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCeEEccccccCCCCcH-HHHHHH-HHhhhhCCCeEEEecCCcccccc
Q 014212 250 ENPYLFNGDFVDRGSFSV-EVILTL-FAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~-e~~~~l-~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
.+.+|++||+++....+. +....+ .......+..+++++||||....
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~~ 90 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGLP 90 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccchh
Confidence 346999999998654332 222111 11122345689999999997543
No 268
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0027 Score=59.25 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
+|..+.+...+.+..+.|...|.+|.+..+....+|...|..-+. .++.+.|.+.|+++++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466667777778889999999999986666678889999988666 5677779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHh
Q 014212 95 MGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKK 131 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~ 131 (429)
.++.+.|...|++++..-|... .+|..........|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998877655 355555555545554
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0056 Score=52.44 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKGYYRRG 89 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la 89 (429)
..+...+|..+...+++++|+..++.++....+. +-+-.++|.+..++|++++|+..+..... +.. +..-...|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 3456788999999999999999999998644332 44567899999999999999998765432 222 23345679
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
.++...|+-++|...|++++...++.+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999999999999999999999885543
No 270
>PRK10941 hypothetical protein; Provisional
Probab=97.20 E-value=0.0053 Score=56.48 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
....++=.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999999999999999999999876665544
No 271
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0016 Score=57.48 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPR----------YPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~g~~~eA~~~~~~al 109 (429)
..++...|+-++..|+|.+|...|+.|+.. .|. ....+.+.++|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999743 243 33578999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 110 ~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
..+|.+..|++..+.++...=+ ..+|..-+.++++++|.-
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn--------------~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWN--------------EAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHhcChhh
Confidence 9999999999998887654322 223444445777777754
No 272
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.11 E-value=0.0016 Score=60.51 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=46.2
Q ss_pred ceEEEccCC-C------------CHHHHHHHHHHcCCCCCCCCeEEccccccCCCC-cHHHHHHHHHhhhhCCCeEEEec
Q 014212 223 HFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSR 288 (429)
Q Consensus 223 ~~~v~GDih-G------------~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~-s~e~~~~l~~lk~~~p~~~~~lr 288 (429)
++.+++|+| + ....+.++++...... .+.+|++||+++.|.. +.+-+..+++.-...+-.++.++
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~-~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRES-LDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCC-CCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 378899999 2 1345566666554332 4469999999998863 33334333333323345689999
Q ss_pred CCcccccc
Q 014212 289 GNHESKSM 296 (429)
Q Consensus 289 GNhe~~~~ 296 (429)
||||....
T Consensus 81 GNHD~~~~ 88 (267)
T cd07396 81 GNHDLYNP 88 (267)
T ss_pred Cccccccc
Confidence 99997644
No 273
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.11 E-value=0.0057 Score=47.49 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=70.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHHHHHHhCCCChHHH
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEE-----------YGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+|..++.+|++-+|++..+..+...+++. ..+..-|.+++++.. +-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888876 344455777766543 2357888888888888887788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
+.+|.-+....-|++++.-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88877776666777777777777764
No 274
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0031 Score=58.15 Aligned_cols=95 Identities=24% Similarity=0.323 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
+.-+-.-|.-|++.++|..|+.+|.+.|..... ++..|.+.|.|...+|+|..|+..+.+|+.++|.+..+++.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445566799999999999999999999988654 4567999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhcCCccc
Q 014212 124 ECEKAVKKLKFEEAIAVPESE 144 (429)
Q Consensus 124 ~~~~~~~~~~~~~a~~~~~~~ 144 (429)
.|+..+.+ |.+|...-+.+
T Consensus 161 kc~~eLe~--~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELER--FAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHH--HHHHHHHHhhh
Confidence 99999988 78887776633
No 275
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.014 Score=52.38 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212 49 VYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (429)
Q Consensus 49 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (429)
..+..+|.++... .++++|.-.|+..-+..|..+......|.|+..+|++++|...++.|+..++++|+++.++-.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3344455555432 357788888888777667778888899999999999999999999999999999999999988
Q ss_pred HHHHHHh
Q 014212 125 CEKAVKK 131 (429)
Q Consensus 125 ~~~~~~~ 131 (429)
+-...|+
T Consensus 250 ~a~~~Gk 256 (299)
T KOG3081|consen 250 LALHLGK 256 (299)
T ss_pred HHHHhCC
Confidence 7777775
No 276
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.08 E-value=0.0091 Score=61.85 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=94.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+|+...+....|..+.+.|+.++|..+++..-...+++...+..+-.||..++++++|+.+|++++..+|. -+..+.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~ 115 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYH 115 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHH
Confidence 4678888999999999999999999998888877788889999999999999999999999999999999999 888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
+-.+|.+.+.|.+=.+.--+..+..|+++-
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 999999999997655554555556676654
No 277
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.07 E-value=0.0016 Score=59.72 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=44.6
Q ss_pred ceEEEccCCC-C-----------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH----HHHHHhhhhCCCeEEE
Q 014212 223 HFTVCGDVHG-Q-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIYL 286 (429)
Q Consensus 223 ~~~v~GDihG-~-----------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~----~~l~~lk~~~p~~~~~ 286 (429)
++..++|+|- . ...+.++++..... ..+.+++.||++|+..-+.+.. .++..|+...|-.|++
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 4778889993 2 12334444433222 2456999999999986665543 3444444333457999
Q ss_pred ecCCcccc
Q 014212 287 SRGNHESK 294 (429)
Q Consensus 287 lrGNhe~~ 294 (429)
+.||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999975
No 278
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.04 E-value=0.0012 Score=59.75 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=42.4
Q ss_pred EEEccCCCCH------HHHHHHHHHcCCCCCCCCeEEccccccCC-----CC--cHHHHHHHHHhhhhCCCeEEEecCCc
Q 014212 225 TVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRG-----SF--SVEVILTLFAFKCMCPSAIYLSRGNH 291 (429)
Q Consensus 225 ~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-----~~--s~e~~~~l~~lk~~~p~~~~~lrGNh 291 (429)
.+++|+|... ..+.+.+..... ..+.++++||++|.. +. ..++...+..|+. .+..|++++|||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~-~~~~v~~v~GNH 78 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSD-QGVPCYFMHGNR 78 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence 5789999543 234444443221 345699999999952 11 2345666666653 346799999999
Q ss_pred ccc
Q 014212 292 ESK 294 (429)
Q Consensus 292 e~~ 294 (429)
|..
T Consensus 79 D~~ 81 (231)
T TIGR01854 79 DFL 81 (231)
T ss_pred chh
Confidence 964
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0079 Score=55.63 Aligned_cols=123 Identities=11% Similarity=-0.044 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY---PKGYYRRGAAY 92 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~ 92 (429)
....+-..+..|++.+|....++.++-.|.+.-++..--.+++-+|+.......+++.+-. +|+- ...+-.++-.+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677889999999999999999999988888888899999999999999998876 5554 44445567788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 141 (429)
.+.|-|++|.+.-+++++++|.+..+...++-++...++ +.++.+..
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--~Keg~eFM 232 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR--HKEGKEFM 232 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch--hhhHHHHH
Confidence 899999999999999999999988888888777776666 55555443
No 280
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.006 Score=50.84 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
..++..++..+...|++++|+..+++++..+|.+..++..+-.++..+|+..+|+..|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999999999988643
No 281
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.01 E-value=0.0025 Score=62.90 Aligned_cols=104 Identities=23% Similarity=0.212 Sum_probs=92.4
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 24 AFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
...+|+...|+.++.+|+...|... ....++|.++...|-...|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3457999999999999999988754 346899999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 103 KDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
+.|++|+.++|+++.....+..+..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998777665543
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.01 E-value=0.0062 Score=59.40 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------CC------------
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DP------------ 79 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p------------ 79 (429)
.+-+...+..+.++-++.-++|++++|+-+.+|..+|.-. ..-..+|.+.++++++. +.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4456678889999999999999999999999999888632 22245566666665543 11
Q ss_pred ----C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 80 ----R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 80 ----~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
. ...+..++|.|..++|+.+||++.++..++..|. +..++.++..++..++. +.++..+..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--Yad~q~lL~ 319 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--YADVQALLA 319 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 0 1345678999999999999999999999998875 56688888888888777 566655554
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.024 Score=49.92 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCC-----
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPR----- 80 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~----- 80 (429)
++..-+..|.-.++..+.++|+.++++++++..+- +..+..+|.+|..- .++++|+.+|++|-+....
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 33344444555566679999999999999987664 33355788888654 8999999999999876432
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212 81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (429)
Q Consensus 81 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~ 159 (429)
-..++...|..-..+++|.+|+..|++.....-+++-..+....-. +..++-.+-..+...+...+.+-.++
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf-------lkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF-------LKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH-------HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 2345666677778899999999999999998888877665554333 44455555555666666667777788
Q ss_pred CCCCCCCcc
Q 014212 160 EPQYSGARI 168 (429)
Q Consensus 160 ~~~~~~~~~ 168 (429)
+|.|...+-
T Consensus 225 dP~F~dsRE 233 (288)
T KOG1586|consen 225 DPAFTDSRE 233 (288)
T ss_pred CCcccccHH
Confidence 898877644
No 284
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.95 E-value=0.0027 Score=57.81 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=42.4
Q ss_pred eEEEccCCCC------------HHHHHHHHHHcCCC-CCCCCeEEccccccCCCC-cH-HHHHHHHHhhhhCCCeEEEec
Q 014212 224 FTVCGDVHGQ------------FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSF-SV-EVILTLFAFKCMCPSAIYLSR 288 (429)
Q Consensus 224 ~~v~GDihG~------------~~~l~~~l~~~~~~-~~~~~~~~lGD~vdrG~~-s~-e~~~~l~~lk~~~p~~~~~lr 288 (429)
+.+++|+|-. ...+.++++..... +..+.+|++||+++.|.. .. .+...+-.+ +-.++.++
T Consensus 2 ~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v~ 77 (240)
T cd07402 2 LAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLLP 77 (240)
T ss_pred EEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEeC
Confidence 6788899943 33556666654322 344569999999998753 22 222333222 45689999
Q ss_pred CCcccc
Q 014212 289 GNHESK 294 (429)
Q Consensus 289 GNhe~~ 294 (429)
||||..
T Consensus 78 GNHD~~ 83 (240)
T cd07402 78 GNHDDR 83 (240)
T ss_pred CCCCCH
Confidence 999974
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.95 E-value=0.0017 Score=38.61 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665554
No 286
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=96.93 E-value=0.0038 Score=51.90 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCCeEEccccccCCCCc--HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 250 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
.+.++++||+++.|... .+...++..+.... ..+++++||||.
T Consensus 36 ~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~ 80 (144)
T cd07400 36 PDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV 80 (144)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE
Confidence 45699999999998742 12334444443221 378999999997
No 287
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.015 Score=56.18 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
..|...|....++.+...|.+.+-.|+-..|.+-. .-..-.+-.++++++.....|++-++..|.+-.+|...|..-..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 34445555555666666666666666666666432 23333444556666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|+.+.|...|+-|+....-+..-+...+.+-......++++|..+|+
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 666666666666666654333333333333333344444555555554
No 288
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.90 E-value=0.0025 Score=54.48 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=56.4
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~ 302 (429)
.+.+++|.|+......+..+..... .-+.+|.+||++...... .+..- ....++.++||.|.....
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~-~~d~vih~GD~~~~~~~~--~l~~~------~~~~i~~V~GN~D~~~~~----- 68 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLE-KVDAVIHAGDSTSPFTLD--ALEGG------LAAKLIAVRGNCDGEVDQ----- 68 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhc-CCCEEEECCCcCCccchH--Hhhcc------cccceEEEEccCCCcccc-----
Confidence 4889999999997655555544333 345699999999865421 11110 247889999999976443
Q ss_pred hhhhhcccchHHHHHHHHHhccCcccce--ec-CeEEEEecCc
Q 014212 303 EGEVRSKLSETFVELFAEVFCCLPLAHV--LN-QKVFVVHGGL 342 (429)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~--~~-~~~~~vH~gi 342 (429)
..+|-..+ ++ -+++++||..
T Consensus 69 --------------------~~~p~~~~~~~~g~ki~l~HGh~ 91 (172)
T COG0622 69 --------------------EELPEELVLEVGGVKIFLTHGHL 91 (172)
T ss_pred --------------------ccCChhHeEEECCEEEEEECCCc
Confidence 33444333 33 5999999965
No 289
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.89 E-value=0.0082 Score=60.27 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHH
Q 014212 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRGAAYLAMGKFKEALKD 104 (429)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~ 104 (429)
+.+.|.+.+....+..|+.+-..+..|.++...|+.++|++.+++++...... .-.++.+|.++..+.++++|..+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44555555555555555555555555555555566666666555555322221 12345555555555666666555
Q ss_pred HHHHHHhC
Q 014212 105 FQQVKKLS 112 (429)
Q Consensus 105 ~~~al~~~ 112 (429)
+.+..+.+
T Consensus 328 f~~L~~~s 335 (468)
T PF10300_consen 328 FLRLLKES 335 (468)
T ss_pred HHHHHhcc
Confidence 55555544
No 290
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.88 E-value=0.016 Score=63.66 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--------
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------- 80 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------- 80 (429)
.+...+|..+...|++++|...+.+++..... ...++.++|.++...|++++|...+++++.+-..
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 34445555555566666666666665543221 0223445555566666666666666665554111
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
....+..+|.++...|++++|...+++++..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 1122344555556666666666666665554
No 291
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.87 E-value=0.0033 Score=58.58 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=44.8
Q ss_pred CceEEEccCCC------------CHHHHHHHHHHcC-CCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEec
Q 014212 222 KHFTVCGDVHG------------QFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 288 (429)
Q Consensus 222 ~~~~v~GDihG------------~~~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lr 288 (429)
.++..+.|+|= ..+.+.++++... ..+..+.+|+.||+++.|. .+-...++..-...+..++.+.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~ 92 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLP 92 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeC
Confidence 35888999992 1355666676542 2233456999999999874 2233333222222345689999
Q ss_pred CCcccc
Q 014212 289 GNHESK 294 (429)
Q Consensus 289 GNhe~~ 294 (429)
||||..
T Consensus 93 GNHD~~ 98 (275)
T PRK11148 93 GNHDFQ 98 (275)
T ss_pred CCCCCh
Confidence 999974
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.055 Score=48.10 Aligned_cols=103 Identities=23% Similarity=0.180 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CCC
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PRY 81 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~ 81 (429)
.+..+..-+..|...++|++|...+.+|.+-..++ +.++-..|.....+..+.+++..+++|..+. |+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34556666777778899999999999999654443 3455667777788899999999999999875 444
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
+..-...|.-..+.-+.++|++.|++++.+-...
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 4444444555556778999999999999875443
No 293
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.87 E-value=0.0037 Score=57.01 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (429)
.+.|.-..+.|+.++|...|+.|+.++|++++++...|.......+.-+|-++|-+|+.++|.+.+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34445567789999999999999999999999999999999999999999999999999999999988777644
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.86 E-value=0.014 Score=64.02 Aligned_cols=128 Identities=13% Similarity=0.008 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------ 81 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 81 (429)
.......+|..+...|++++|...++++++..+.. ..+...+|.++...|++++|...+++++......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34555667889999999999999999999865543 2356778999999999999999999999764321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++..+|.++..+|++++|...+++++.+.... ......++.++...|+ +++|....+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~ 597 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--LDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 2466788999999999999999999999873221 1223345555555555 555555444
No 295
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.02 Score=53.50 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 014212 12 SRAEELKALANEAFR-AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYR 87 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 87 (429)
.....|...|...+. .++.+.|...|+++++..|.+...|......+...++.+.|...|++++..-|... ..|-.
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK 112 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 345678888888777 56777799999999999999999999999999999999999999999998876644 57888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
....-...|+.+......+++.+..|+.....
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 88888899999999999999999999855443
No 296
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.84 E-value=0.054 Score=51.76 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------C-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------------N-----AVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
++-..-|..++++++|..|..-|..|+++..+ + ..+...+..||.++++.+.|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34445677788899999998888888876322 1 23456789999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
++|.+...+...|.++..+.+|.+|...+.-|.-+
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888776654
No 297
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.82 E-value=0.0029 Score=60.86 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=43.8
Q ss_pred ceEEEccCC-CC-----------HHHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHH----hhhhCCCeEE
Q 014212 223 HFTVCGDVH-GQ-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFA----FKCMCPSAIY 285 (429)
Q Consensus 223 ~~~v~GDih-G~-----------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~----lk~~~p~~~~ 285 (429)
++..++|+| |. ...+.++++..... ..+.+++.||+.|+. +.+.+++.++.. .....+-.|+
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 477889999 31 23344444443322 235699999999985 445555444433 2122356799
Q ss_pred EecCCcccc
Q 014212 286 LSRGNHESK 294 (429)
Q Consensus 286 ~lrGNhe~~ 294 (429)
+|.||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999964
No 298
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.051 Score=48.95 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 14 ~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
-..+.++|..+.+ .+++.+|.-+|++.-+..|..+......+.|++++++|++|...++.|+..++++++++.++-
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3445556666553 346889999999988888888999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH-HHHHHHhCCCCHHH
Q 014212 90 AAYLAMGKFKEALKD-FQQVKKLSPNDPDA 118 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~-~~~al~~~p~~~~~ 118 (429)
.+-..+|+-.++.+- +.+....+|+++-.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999988776655 45555667777654
No 299
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.80 E-value=0.041 Score=59.82 Aligned_cols=125 Identities=12% Similarity=-0.051 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
..|..+-+....-|.-+.-.+.|++|-+.+ +....+..|..+|....++++|.+.++..++........|..+|..+..
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 344444444444444444455555554432 2244555556666666666666666666665555555566666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 95 MGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+.+-++|...+.+|++.-|. +.+.....+.+..+.|+ .+.+..+++
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD--aeRGRtlfE 1624 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD--AERGRTLFE 1624 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC--chhhHHHHH
Confidence 66666666666666666655 44555555555555554 344444444
No 300
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.80 E-value=0.0026 Score=58.40 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=43.5
Q ss_pred eEEEccCCCCHHHHHHHHHHcCC--CCCCCCeEEccccccCCCCc-HHHH-------------HHHHHhhhhCCCeEEEe
Q 014212 224 FTVCGDVHGQFYDLLNIFELNGL--PSEENPYLFNGDFVDRGSFS-VEVI-------------LTLFAFKCMCPSAIYLS 287 (429)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~--~~~~~~~~~lGD~vdrG~~s-~e~~-------------~~l~~lk~~~p~~~~~l 287 (429)
+.|+||+||.++.+.+.++.... ....+-+|.+||+-..+..+ .+.+ .++-. ....|--+++|
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g-~~~~p~~t~fi 79 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSG-EKKAPILTIFI 79 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcC-CccCCeeEEEE
Confidence 47899999999988774443211 12345699999996544433 3222 11111 22356668899
Q ss_pred cCCcccc
Q 014212 288 RGNHESK 294 (429)
Q Consensus 288 rGNhe~~ 294 (429)
.||||..
T Consensus 80 ~GNHE~~ 86 (262)
T cd00844 80 GGNHEAS 86 (262)
T ss_pred CCCCCCH
Confidence 9999964
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.77 E-value=0.003 Score=38.73 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
|.+||.+|..+|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.77 E-value=0.0031 Score=37.44 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQ 46 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 46 (429)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555544443
No 303
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.76 E-value=0.018 Score=43.54 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCC
Q 014212 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAYLAMGK 97 (429)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 97 (429)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3556777777788888888888888888888888888888777777654 3344444444444444
No 304
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.76 E-value=0.0023 Score=55.64 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCeEEccccccCCCCc--HHHHHHHHHhhhhCC----CeEEEecCCcccc
Q 014212 250 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHESK 294 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p----~~~~~lrGNhe~~ 294 (429)
.+.++|+||++|.|+.+ .+....+..++..++ -.++.+.||||.-
T Consensus 43 PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 43 PDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 45699999999999964 346666666654332 5678899999975
No 305
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.031 Score=54.50 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 014212 32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKK 110 (429)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~ 110 (429)
+-+..|++|+..-+.|...|........+.+.+.+--..|.+++..+|++++.|..-|.-.++-+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 456779999999999999999998877777779999999999999999999999999987777776 8999999999999
Q ss_pred hCCCCHHHHHHHH
Q 014212 111 LSPNDPDAAQKVK 123 (429)
Q Consensus 111 ~~p~~~~~~~~l~ 123 (429)
.+|+++..+...-
T Consensus 169 ~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 169 FNPDSPKLWKEYF 181 (568)
T ss_pred cCCCChHHHHHHH
Confidence 9999998775443
No 306
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.72 E-value=0.0039 Score=55.77 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=29.0
Q ss_pred CCCCeEEccccccCC-----C--Cc-HHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 249 EENPYLFNGDFVDRG-----S--FS-VEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 249 ~~~~~~~lGD~vdrG-----~--~s-~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
..+.+|++||++|.- . .. .+++..++.+. ..+..|+.+.||||....
T Consensus 30 ~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~v~GNHD~~~~ 84 (217)
T cd07398 30 EADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-DRGTRVYYVPGNHDFLLG 84 (217)
T ss_pred CCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-HCCCeEEEECCCchHHHH
Confidence 345699999999741 1 11 22223333332 345789999999997543
No 307
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.72 E-value=0.0037 Score=55.21 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=42.1
Q ss_pred ceEEEccCCCCHH-----------HHHHHHHHcCCCCCCCCeEEccccccCCCCc---HHHHHHHHHhhhhCCCeEEEec
Q 014212 223 HFTVCGDVHGQFY-----------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYLSR 288 (429)
Q Consensus 223 ~~~v~GDihG~~~-----------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s---~e~~~~l~~lk~~~p~~~~~lr 288 (429)
++.+++|+|-... ...+.+...-.....+.+|++||+++.+... .+.+..+++......-.++++.
T Consensus 4 ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 83 (199)
T cd07383 4 KILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATF 83 (199)
T ss_pred EEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4788899995222 1122222211112335699999999977653 5555555544333445688899
Q ss_pred CCcc
Q 014212 289 GNHE 292 (429)
Q Consensus 289 GNhe 292 (429)
||||
T Consensus 84 GNHD 87 (199)
T cd07383 84 GNHD 87 (199)
T ss_pred ccCC
Confidence 9999
No 308
>PRK10941 hypothetical protein; Provisional
Probab=96.71 E-value=0.027 Score=51.93 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
...+.++=..|.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++.-++.-|+++.+-.-...+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345667788899999999999999999999999999999999999999999999999999999999998876544433
No 309
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.69 E-value=0.0036 Score=56.20 Aligned_cols=73 Identities=25% Similarity=0.224 Sum_probs=44.3
Q ss_pred eEEEccCCCCH---------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhh-hh--CCCeEE
Q 014212 224 FTVCGDVHGQF---------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK-CM--CPSAIY 285 (429)
Q Consensus 224 ~~v~GDihG~~---------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk-~~--~p~~~~ 285 (429)
+..++|+|=.. ..+.++++..... ..+.+++.||+++....+.+.+..+.... .. .+-.++
T Consensus 2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 67788888321 2345555544322 23469999999998875554433333222 11 245689
Q ss_pred EecCCcccccch
Q 014212 286 LSRGNHESKSMN 297 (429)
Q Consensus 286 ~lrGNhe~~~~~ 297 (429)
++.||||.....
T Consensus 81 ~~~GNHD~~~~~ 92 (223)
T cd00840 81 IIAGNHDSPSRL 92 (223)
T ss_pred EecCCCCCcccc
Confidence 999999976543
No 310
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.68 E-value=0.05 Score=43.78 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHhh---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 47 NAVYYANRAFAHTKLE---EYGSAIQDASKAIE-IDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
.....++++.++.... +.++.+..++..+. -.|+ .-+..|.||..+++.++|++|+.+.+..++..|+|+++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3556788888887765 56678889999886 4443 45688999999999999999999999999999999999877
Q ss_pred HHHHHHHHH
Q 014212 122 VKECEKAVK 130 (429)
Q Consensus 122 l~~~~~~~~ 130 (429)
...+...+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 766655544
No 311
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.021 Score=57.38 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=78.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-h
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-P 82 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~ 82 (429)
..-|+.+-.++..|..+..+|+.++|++.|++++..... ..-.++.+|.+++.+.+|++|..++.+..+.+.-. +
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 345777888889999999999999999999988854333 23457788999999999999999999998865432 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
-..|..|.|+...++.+.+...-++|.++
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l 369 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEEL 369 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHH
Confidence 23455678888888886666655555554
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.66 E-value=0.25 Score=41.32 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=92.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
...-...+..........++.+++...+...--+.|..+..-..-|..+...|++.+|+..++.+.+..|..+.+--.++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 44556788889999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 014212 90 AAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~l~~~~ 126 (429)
.|+..+|+.+ -.. -+.+++- +.++.+......+.
T Consensus 86 ~CL~~~~D~~--Wr~~A~evle~-~~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 86 LCLYALGDPS--WRRYADEVLES-GADPDARALVRALL 120 (160)
T ss_pred HHHHHcCChH--HHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 9999999862 222 2234443 44566655554443
No 313
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.64 E-value=0.0049 Score=55.87 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=27.8
Q ss_pred CCCCeEEccccccCCCCc--HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 249 EENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 249 ~~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
..+.+++.||++++++.. .+.+..|.++ |..++++.||||.
T Consensus 41 ~~D~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~V~GNHD~ 83 (232)
T cd07393 41 PEDIVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVLLKGNHDY 83 (232)
T ss_pred CCCEEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEEEeCCccc
Confidence 456688999999887632 2334444333 3348899999997
No 314
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.62 E-value=0.019 Score=51.59 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
.+.-|++-|...++.|++++|.+.|+++....|.. ..+...++.++++.+++++|+...++-+++.|.++++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 46778999999999999999999999999998864 5689999999999999999999999999999998775
No 315
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.60 E-value=0.0047 Score=37.83 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQ 39 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~ 39 (429)
+..+|.+|.+.|+|++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 316
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.56 E-value=0.0057 Score=61.90 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=43.6
Q ss_pred CCceEEEccCC-CCH----HHHHHHHHHc-CC-------CCCCCCeEEccccccC-CCCc---------------HHHHH
Q 014212 221 GKHFTVCGDVH-GQF----YDLLNIFELN-GL-------PSEENPYLFNGDFVDR-GSFS---------------VEVIL 271 (429)
Q Consensus 221 ~~~~~v~GDih-G~~----~~l~~~l~~~-~~-------~~~~~~~~~lGD~vdr-G~~s---------------~e~~~ 271 (429)
...+.++.|+| |.. ..+..+++.. |. ....+.+|++||++|. |+.+ .++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 34688899999 542 2233333322 22 1223569999999994 3221 13445
Q ss_pred HHHHhhhhCCCeEEEecCCcccccc
Q 014212 272 TLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 272 ~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
+|..+. ..-.|++++||||....
T Consensus 323 ~L~~L~--~~i~V~~ipGNHD~~~~ 345 (504)
T PRK04036 323 YLKQIP--EDIKIIISPGNHDAVRQ 345 (504)
T ss_pred HHHhhh--cCCeEEEecCCCcchhh
Confidence 555543 33579999999997543
No 317
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=96.54 E-value=0.0065 Score=54.32 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=53.9
Q ss_pred eEEEccCCCCHH----HHH----HHHHHcCCCCCCCCeEEccccccCCCCcH---HHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 224 FTVCGDVHGQFY----DLL----NIFELNGLPSEENPYLFNGDFVDRGSFSV---EVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 224 ~~v~GDihG~~~----~l~----~~l~~~~~~~~~~~~~~lGD~vdrG~~s~---e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
+.+++|+|-..+ .+. .+.+..... ..+.++++||+++.|.... +....+..|. ..+--++.++||||
T Consensus 3 ~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~~p~~~~~GNHD 80 (214)
T cd07399 3 LAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLD-KAGIPYSVLAGNHD 80 (214)
T ss_pred EEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHH-HcCCcEEEECCCCc
Confidence 788999985222 222 233332211 2346899999999998433 2222222222 12345788999999
Q ss_pred cccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCc
Q 014212 293 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi 342 (429)
..... .+. ...+-.+.+.+.++.-|- ..-++++|-=+
T Consensus 81 ~~~~l-d~~--------~~~~ql~WL~~~L~~~~~----~~~iv~~H~p~ 117 (214)
T cd07399 81 LVLAL-EFG--------PRDEVLQWANEVLKKHPD----RPAILTTHAYL 117 (214)
T ss_pred chhhC-CCC--------CCHHHHHHHHHHHHHCCC----CCEEEEecccc
Confidence 32111 111 123333445555554331 23578888643
No 318
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.042 Score=55.05 Aligned_cols=98 Identities=24% Similarity=0.247 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
..+++.|..+++..+|..|++.|...++--|.| +....+++.||..+.+.+.|+++++.|-+.+|.++-.-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 357888999999999999999999999876654 56677899999999999999999999999999999988888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
-.+....+.-++|+.+..+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888999999999999988777643
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.45 E-value=0.0055 Score=35.42 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 79 (429)
+..+|.+++.++++++|+.+++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444445445555555555544444444
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.43 E-value=0.0044 Score=54.28 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=46.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (429)
....+.++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344566777888888888888888888888888888888888888888888888887764
No 321
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.41 E-value=0.061 Score=52.71 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212 18 KALANEAFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
+.+|.++.+.|+.++|++.++..++..|. +..++.++..++..++.|.++...+.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444444555555555555554444433 233444444555555554444444433
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.36 E-value=0.0064 Score=35.11 Aligned_cols=32 Identities=38% Similarity=0.781 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
.+++.+|.++..++++++|+..++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666654
No 323
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.36 E-value=0.014 Score=47.76 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=31.4
Q ss_pred CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccch
Q 014212 249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297 (429)
Q Consensus 249 ~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~ 297 (429)
+.+.+.+|||+.-.-..--+....+-+| |+++++++||||.--..
T Consensus 45 p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~ 89 (186)
T COG4186 45 PDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPM 89 (186)
T ss_pred ccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCccc
Confidence 4567999999987544444444444333 78999999999975443
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.34 E-value=0.026 Score=42.66 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHh
Q 014212 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKK 131 (429)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 131 (429)
.+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.+...+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667899999999999999999999999999999999999999998766 6677777777777775
No 325
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.32 E-value=0.011 Score=53.15 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCeEEccccccCCCC---cHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 250 ENPYLFNGDFVDRGSF---SVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~---s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
.+.++++||+.+.... ..++..++..+ ...+++++||||...
T Consensus 59 ~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 59 IEALIINGDLKHEFKKGLEWRFIREFIEVT----FRDLILIRGNHDALI 103 (225)
T ss_pred CCEEEEcCccccccCChHHHHHHHHHHHhc----CCcEEEECCCCCCcc
Confidence 3569999999975554 22333344333 247999999999754
No 326
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0082 Score=55.98 Aligned_cols=118 Identities=26% Similarity=0.423 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS-----------Q--------NAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
.+.....|+..++.++|+.|..-|.++++.-. + -...+.+++.+-...+.+..|+.....+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence 34556678889999999999999999886311 1 1234567888999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
++.+++...+++..+..+....++++|.+.+..+....|++..+...+..+.....+
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999988777766655554
No 327
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=96.26 E-value=0.0066 Score=52.14 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCeEEccccccCCCCcH--H---HHHHHHHhhhhC-----CCeEEEecCCccccc
Q 014212 250 ENPYLFNGDFVDRGSFSV--E---VILTLFAFKCMC-----PSAIYLSRGNHESKS 295 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~--e---~~~~l~~lk~~~-----p~~~~~lrGNhe~~~ 295 (429)
.+.+|++||++|.|..+. + .+..+..+.... +..+++++||||...
T Consensus 46 pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 46 PDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 456999999999887532 2 333332322111 456999999999864
No 328
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.25 E-value=0.016 Score=56.67 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=52.1
Q ss_pred CceEEEccCCCC------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhh----------
Q 014212 222 KHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---------- 279 (429)
Q Consensus 222 ~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~---------- 279 (429)
.++.+++|+|-. +..+.++++.+... ..+-+++.||+.|++.-|.+++..++.+..+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~ 82 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCEL 82 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccch
Confidence 458889999943 44566676665433 3456888999999999998888665554322
Q ss_pred --------------------------CCCeEEEecCCccccc
Q 014212 280 --------------------------CPSAIYLSRGNHESKS 295 (429)
Q Consensus 280 --------------------------~p~~~~~lrGNhe~~~ 295 (429)
..--||++-||||...
T Consensus 83 ~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 83 EFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1347999999999875
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.23 E-value=0.026 Score=37.80 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY 51 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 51 (429)
.++.+|..+++.|+|++|..+.+.+++.+|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555555443
No 330
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.18 E-value=0.0096 Score=50.29 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCeEEccccccCCCCcH-H----HHHHHHHhhhhC-CCeEEEecCCccccc
Q 014212 250 ENPYLFNGDFVDRGSFSV-E----VILTLFAFKCMC-PSAIYLSRGNHESKS 295 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~-e----~~~~l~~lk~~~-p~~~~~lrGNhe~~~ 295 (429)
.+.++++||+++.+..+. + .+..+.++.... +-.++++.||||...
T Consensus 39 pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 39 PDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred CCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 456999999999886432 2 222222222111 356899999999753
No 331
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.15 E-value=0.0078 Score=52.78 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=57.2
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
....+.++.+.|.+.|.+++++-|++...|+++|....+.|+++.|...|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567789999999999999999999999999999999999999999999999999998743
No 332
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.14 E-value=0.18 Score=48.56 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=98.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CC-----
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DP----- 79 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p----- 79 (429)
....+..+...+..+.+.|+++.|...+.++...++. .+.+.+..+..+...|+..+|+..++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4456778999999999999999999999999886522 5677788899999999999999999888871 10
Q ss_pred ----------------------------CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212 80 ----------------------------RYPKGYYRRGAAYLAM------GKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (429)
Q Consensus 80 ----------------------------~~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (429)
..+.+++.+|.....+ +..+++...|+++++++|+...+++..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0134677777777777 888999999999999999999999988887
Q ss_pred HHHHH
Q 014212 126 EKAVK 130 (429)
Q Consensus 126 ~~~~~ 130 (429)
+..+-
T Consensus 302 ~~~~~ 306 (352)
T PF02259_consen 302 NDKLL 306 (352)
T ss_pred HHHHH
Confidence 65543
No 333
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.12 E-value=0.031 Score=51.35 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCCeEEccccccCCCCcHH-----HHHHHHHh-hhhC-CCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHh
Q 014212 250 ENPYLFNGDFVDRGSFSVE-----VILTLFAF-KCMC-PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 322 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~e-----~~~~l~~l-k~~~-p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (429)
.+.++|+||++|.|..... -+..+..+ .... ...++.|.||||.- +... .....++.|.++|
T Consensus 46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig-------~~~~----~~~~~~~rf~~~F 114 (257)
T cd08163 46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG-------FGNG----VVLPVRQRFEKYF 114 (257)
T ss_pred CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC-------CCCC----CCHHHHHHHHHHh
Confidence 3469999999999986421 12222222 1110 13588999999962 2211 1123456677777
Q ss_pred ccCcccceecCeEEEE
Q 014212 323 CCLPLAHVLNQKVFVV 338 (429)
Q Consensus 323 ~~lp~~~~~~~~~~~v 338 (429)
........+++--|++
T Consensus 115 g~~~~~~~~~~~~fV~ 130 (257)
T cd08163 115 GPTSRVIDVGNHTFVI 130 (257)
T ss_pred CCCceEEEECCEEEEE
Confidence 6544444445533443
No 334
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.12 E-value=0.012 Score=57.84 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=42.6
Q ss_pred ceEEEccCCCCH--------HH----HHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH----HHHHHhhhhCCCeEEE
Q 014212 223 HFTVCGDVHGQF--------YD----LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIYL 286 (429)
Q Consensus 223 ~~~v~GDihG~~--------~~----l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~----~~l~~lk~~~p~~~~~ 286 (429)
++..++|+|-.. .+ +.++.+..... ..+.+++.||+.|++..+.+.. .++..|+. .+-.|++
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~ 79 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVV 79 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEE
Confidence 467888988321 11 22333332222 3456999999999986655443 33334442 2356899
Q ss_pred ecCCccccc
Q 014212 287 SRGNHESKS 295 (429)
Q Consensus 287 lrGNhe~~~ 295 (429)
+.||||...
T Consensus 80 I~GNHD~~~ 88 (407)
T PRK10966 80 LAGNHDSVA 88 (407)
T ss_pred EcCCCCChh
Confidence 999999653
No 335
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.11 E-value=0.26 Score=47.41 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=78.8
Q ss_pred cHhHHHHHHHHHHHHHH---hcCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFR---AKKYSQAIDLYSQA-IELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIE 76 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~ 76 (429)
-+++....+..|.++-+ .|+.++|+..+..+ ....+.+++.+..+|.+|..+ ...++|+.+|.++.+
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 44556677788888888 89999999999994 455677889999999888653 236789999999998
Q ss_pred hCCCChH---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 77 IDPRYPK---------------------------------------------GYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 77 ~~p~~~~---------------------------------------------~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
++|+.-. .+-.++.+..-.|++++|.+++++++++
T Consensus 255 ~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 255 IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 8764211 1223344555556677777777777777
Q ss_pred CCCCHHHHHHH
Q 014212 112 SPNDPDAAQKV 122 (429)
Q Consensus 112 ~p~~~~~~~~l 122 (429)
.|........+
T Consensus 335 ~~~~W~l~St~ 345 (374)
T PF13281_consen 335 KPPAWELESTL 345 (374)
T ss_pred CCcchhHHHHH
Confidence 66655444333
No 336
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.10 E-value=0.0014 Score=60.72 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=74.5
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (429)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a 137 (429)
.+..|.++.|++.|..++.++|..+..|...|.++.++++...|+..|..|++++|+...-+...+.+++.++. +++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHHH
Confidence 45578899999999999999999999999999999999999999999999999999999989999999999988 5555
Q ss_pred hcCCc
Q 014212 138 IAVPE 142 (429)
Q Consensus 138 ~~~~~ 142 (429)
...++
T Consensus 202 a~dl~ 206 (377)
T KOG1308|consen 202 AHDLA 206 (377)
T ss_pred HHHHH
Confidence 54444
No 337
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=95.98 E-value=0.027 Score=52.07 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=41.1
Q ss_pred eEEEccCCCCH----------------HHHHHHHHHcC-CCCCCCCeEEccccccCCCCcH---HHHHHHHH-hhh-hCC
Q 014212 224 FTVCGDVHGQF----------------YDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV---EVILTLFA-FKC-MCP 281 (429)
Q Consensus 224 ~~v~GDihG~~----------------~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~---e~~~~l~~-lk~-~~p 281 (429)
+.+++|.|-.. ..+..+++... ..+..+.++++||+++.|.... +....+.. ++. ..+
T Consensus 7 f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (262)
T cd07395 7 FIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDPD 86 (262)
T ss_pred EEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccCC
Confidence 67778888553 12344555442 2234456899999999887642 11122211 111 123
Q ss_pred CeEEEecCCcccc
Q 014212 282 SAIYLSRGNHESK 294 (429)
Q Consensus 282 ~~~~~lrGNhe~~ 294 (429)
-.++.+.||||..
T Consensus 87 vp~~~i~GNHD~~ 99 (262)
T cd07395 87 IPLVCVCGNHDVG 99 (262)
T ss_pred CcEEEeCCCCCCC
Confidence 4589999999974
No 338
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.058 Score=50.15 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=84.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQNAV---YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (429)
...|.+.-++..--..++..|+...-...+++++.. +|+-|- ..=.++.++...|-|++|.+..+++++++|.+.-
T Consensus 131 ~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 131 DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW 210 (491)
T ss_pred HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH
Confidence 456777777777788889999999999999998877 666533 3334677788999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVK 109 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al 109 (429)
+....+.++...|+++++.++..+.-
T Consensus 211 a~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999998876543
No 339
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.94 E-value=0.016 Score=50.38 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=42.2
Q ss_pred cCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH-HHHHHHhhhhC---------------------CCeEEE
Q 014212 229 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV-ILTLFAFKCMC---------------------PSAIYL 286 (429)
Q Consensus 229 DihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~-~~~l~~lk~~~---------------------p~~~~~ 286 (429)
|++|+-.=|.++++...+...++.++||||++|.|--+-+- -......+..+ .-.+++
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 55666666677777665555556799999999988533322 23333332222 246788
Q ss_pred ecCCcccc
Q 014212 287 SRGNHESK 294 (429)
Q Consensus 287 lrGNhe~~ 294 (429)
|.||||.-
T Consensus 104 V~GNHDIG 111 (193)
T cd08164 104 IAGNHDVG 111 (193)
T ss_pred ECCcccCC
Confidence 99999984
No 340
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=95.93 E-value=0.029 Score=52.55 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=48.3
Q ss_pred ceEEEccCCCC------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhh--hhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQ------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK--CMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk--~~~p~~~~~lrGNhe~~ 294 (429)
++..+.|+|-. ...+..+++....... +.+|+.||+.+.|. .+-...+..+. ...|..+++++||||.+
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~-D~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~ 78 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKP-DLLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPGNHDAR 78 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCC-CEEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCCCCcCC
Confidence 36788899966 3344556666664433 57999999999963 22222232222 25678899999999988
Q ss_pred cchh
Q 014212 295 SMNK 298 (429)
Q Consensus 295 ~~~~ 298 (429)
....
T Consensus 79 ~~~~ 82 (301)
T COG1409 79 VVNG 82 (301)
T ss_pred chHH
Confidence 6653
No 341
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.92 E-value=0.16 Score=43.74 Aligned_cols=101 Identities=20% Similarity=0.098 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CChH--
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPK-- 83 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~-- 83 (429)
.+-..++..+|..|.+.|+.++|++.|.++.+..... ...++++-.+....+++..+.....++-.+-. .+++
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3445678899999999999999999999987754442 45667777888888899988888888876532 2332
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 84 --GYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 84 --~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
....-|..+...++|.+|-+.|-.+..-
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2344577777888898888888666543
No 342
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.91 E-value=0.02 Score=47.83 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=48.1
Q ss_pred EEEccCCCCHHHHHHHHHHc-CCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 225 TVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
.|+||+||+++.+..-++.. .....=+-++++||+-.-...+-+ +.-.+.=....|--.|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 37899999999998866653 222233468999999986666533 44444445567888999999998
No 343
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.034 Score=49.40 Aligned_cols=101 Identities=22% Similarity=0.343 Sum_probs=56.0
Q ss_pred EEccCCCC-----H-HHHHHHHHHcCCCCCCCCeEEcccccc----CCCC---cHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 226 VCGDVHGQ-----F-YDLLNIFELNGLPSEENPYLFNGDFVD----RGSF---SVEVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 226 v~GDihG~-----~-~~l~~~l~~~~~~~~~~~~~~lGD~vd----rG~~---s~e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
.|.|+|=. . +.+...++. .++..+.++++||++| +.+. -.+|...|..+ .....++|.+.||||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~--~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i~GN~D 78 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLRE--EAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYIHGNHD 78 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHh--ccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEecCchH
Confidence 35677743 3 333444443 2234567999999985 2211 23455555444 345789999999999
Q ss_pred cccchhhccchhhhhcccchHHHHHHHHHhccCccccee---cCeEEEEecCccCC
Q 014212 293 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSV 345 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~ 345 (429)
.. +...++-. .-.+.-+|-..++ +.+++++||....+
T Consensus 79 fl-l~~~f~~~---------------~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t 118 (237)
T COG2908 79 FL-LGKRFAQE---------------AGGMTLLPDPIVLDLYGKRILLAHGDTFCT 118 (237)
T ss_pred HH-HHHHHHhh---------------cCceEEcCcceeeeecCcEEEEEeCCcccc
Confidence 43 33332211 0012224433333 67999999987433
No 344
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.86 E-value=0.16 Score=42.44 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (429)
..+..+..+-...++.+++...+...-.+.|..++.-..-|.++...|++.+|+..++.+.+-.|..+.+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34556666777788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhHHH
Q 014212 129 VKKLKF 134 (429)
Q Consensus 129 ~~~~~~ 134 (429)
+++..+
T Consensus 91 ~~D~~W 96 (160)
T PF09613_consen 91 LGDPSW 96 (160)
T ss_pred cCChHH
Confidence 887543
No 345
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.85 E-value=0.29 Score=49.48 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---------- 80 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------- 80 (429)
..|...|..|-..|+.+.|...++++++.+-.. +..|..-|..-++..+++.|++..++|......
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 567889999999999999999999999875432 678888998888899999999999998865211
Q ss_pred --------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212 81 --------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (429)
Q Consensus 81 --------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 143 (429)
+...|..++......|-++.-...|++.+.+.=-.|..-.+.+..+..- ..|+++...|++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh--~yfeesFk~YEr 536 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH--KYFEESFKAYER 536 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--HHHHHHHHHHHc
Confidence 2346788888888999999999999999999888888887777665433 337777777773
No 346
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.25 Score=49.38 Aligned_cols=117 Identities=15% Similarity=0.003 Sum_probs=92.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHH-HHHHHhCCCChHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA-SKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~l 88 (429)
+|+-.-+.. +...+...++...|......++..+|+++.+..++|.+....|....+...+ +.+....|++......+
T Consensus 64 ~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 64 NPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred CHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 333333333 5666777888888999999999999999999999999988877666555554 44899999988765555
Q ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 89 ------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 89 ------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
+.....+|+..+|....+++..+.|.++.+...+.....
T Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 143 IRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 888889999999999999999999999887766665533
No 347
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.63 E-value=0.032 Score=51.38 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCeEEccccccCCCCc--------H---HHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 251 NPYLFNGDFVDRGSFS--------V---EVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 251 ~~~~~lGD~vdrG~~s--------~---e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
+.+|++||++|++... . +.+..+..+....+..++.++||||...
T Consensus 35 d~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~~ 90 (256)
T cd07401 35 ALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLFN 90 (256)
T ss_pred CEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcCC
Confidence 4699999999987531 1 1222222222223567888999999853
No 348
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.62 E-value=0.15 Score=45.42 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=67.7
Q ss_pred HHhcCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhhCHH-------HHHHHHHHHHHhCCC------ChHH
Q 014212 25 FRAKKYSQAIDLYSQAIEL----NSQ---NAVYYANRAFAHTKLEEYG-------SAIQDASKAIEIDPR------YPKG 84 (429)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~~ 84 (429)
-....+++|++.|.-|+-. ... -+..+..+|.+|..+++-+ .|++.|++|++.... ....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3456788999999988752 222 2567888999999999844 566666666654321 2467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
.+.+|.++...|++++|..+|.+++.....+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 8889999999999999999999999865443
No 349
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=95.59 E-value=0.029 Score=52.71 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=38.4
Q ss_pred ceEEEccCCC----CHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 223 HFTVCGDVHG----QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 223 ~~~v~GDihG----~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
++.++||.|. ....+..+.+. ....+-++++||+++-+... -..+..+-.+.. .--++.++||||.
T Consensus 6 ~f~v~gD~~~~~~~~~~~~~~l~~~---~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~~~GNHD~ 80 (294)
T cd00839 6 KFAVFGDMGQNTNNSTNTLDHLEKE---LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLAS--YVPYMVTPGNHEA 80 (294)
T ss_pred EEEEEEECCCCCCCcHHHHHHHHhc---cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHh--cCCcEEcCccccc
Confidence 5899999995 22333333332 22345689999999544322 222222222222 2347889999996
Q ss_pred cc
Q 014212 294 KS 295 (429)
Q Consensus 294 ~~ 295 (429)
..
T Consensus 81 ~~ 82 (294)
T cd00839 81 DY 82 (294)
T ss_pred cc
Confidence 54
No 350
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.48 E-value=0.24 Score=54.23 Aligned_cols=145 Identities=14% Similarity=0.020 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGA 90 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~ 90 (429)
....+..+..+|.+.+.+++|.++|++.++.--+....|..+|..+++..+-++|...+.+|++.-|. +.+..-.-|+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 34578889999999999999999999999988888999999999999999999999999999999998 7778888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-----HHHhhcCCcccccccccccccccccc
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAVPESERHSVADSIDYQSIEV 159 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~a~~~~~~~~~~~a~~~~~~~l~~ 159 (429)
+-++.|+.+.+...|+-.+.-.|.-.+.|.-+.......+..+ |+.++..-- ....+...+.+.++.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l--~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL--SIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--ChhHhHHHHHHHHHH
Confidence 9999999999999999999999999999988777665544432 455544322 223333344444444
No 351
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.42 E-value=0.044 Score=50.32 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=75.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR-RGAAYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 37 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
|.++....|+++..|...+.-..+.+-|.+.-..|..++..+|.+.+.|.. -+.-+...++++.|...|.++++++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555678899999999888888889999999999999999999999987 4566778899999999999999999999
Q ss_pred HHHHHHHHH
Q 014212 116 PDAAQKVKE 124 (429)
Q Consensus 116 ~~~~~~l~~ 124 (429)
|..|...-.
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 988765543
No 352
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.51 Score=42.62 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=97.5
Q ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 014212 19 ALANEAFRA-KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96 (429)
Q Consensus 19 ~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 96 (429)
....+-+.. ..-..|+..-..++.++|.+.++|..+-.++..+ .+..+-++++...++-+|.|-..|...-.+....|
T Consensus 47 ~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 47 DYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 333333333 4557899999999999999999999888877665 57889999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 97 KFK-EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 97 ~~~-eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
+.. .-++..+.++..+..+--+|....-+.+..+..
T Consensus 127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 888 889999999999999999999999988888873
No 353
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.33 E-value=0.3 Score=46.96 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHHH-HhCCCChHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTK---LEEYGSAIQDASKAI-EIDPRYPKGY 85 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~ 85 (429)
++...++=..|...++|+.-+...+..-.+ -++.....+.+|.++-+ .|+.++|++.+..++ ...+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445566666778888888887777776555 44566777888888888 889999999988844 4456678888
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 014212 86 YRRGAAYLAM---------GKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 86 ~~la~~~~~~---------g~~~eA~~~~~~al~~~p~~ 115 (429)
..+|.+|-.+ ...++|+..|.++.+.+|+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 8888887654 23578999999999988754
No 354
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=95.32 E-value=0.044 Score=51.03 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=48.6
Q ss_pred CCceEEEccCCCCHHH--HHHHHHH-cCCCCCCCCeEEccccccC--CCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 221 GKHFTVCGDVHGQFYD--LLNIFEL-NGLPSEENPYLFNGDFVDR--GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 221 ~~~~~v~GDihG~~~~--l~~~l~~-~~~~~~~~~~~~lGD~vdr--G~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
+.++.-+.|+|-.... ..+.+.. ....+ +-+++.|||+|+ -+....++..|..|+ .|-.+|++-||||...
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~--DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~ 119 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELP--DLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGV 119 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCC--CEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEeccccccc
Confidence 4468888999976544 2222222 22222 668889999995 555666677777776 5678899999998654
Q ss_pred ch
Q 014212 296 MN 297 (429)
Q Consensus 296 ~~ 297 (429)
-.
T Consensus 120 ~~ 121 (284)
T COG1408 120 DR 121 (284)
T ss_pred cc
Confidence 43
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.30 E-value=0.24 Score=35.90 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhhCHHHHHHHHHHHHHh
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA---FAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~ 77 (429)
.+......|..++.+.+.++|+..++++++..++.+..+..+| .+|...|+|++++.+..+-+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888777666555444 5677788888877776655543
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.24 E-value=0.027 Score=54.76 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NS---------QNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
....+.++|.++++.|.|.-+..+|.+|++. .| ....+.++.|..|...|+.-.|.+||.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 3456789999999999999999999999961 11 23578899999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHH
Q 014212 75 IEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~ 94 (429)
+...-.+|..|.++|.|...
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999988764
No 357
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.21 E-value=0.16 Score=52.63 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHhhCHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQA----------IELNS----------QNAVYYANRAFAHTKLEEYGSAIQDA 71 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~ 71 (429)
.--..+++.|..+-..+|.+.|+++|+++ +.-+| .+...|...|..+...|+.+.|+..|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 33457889999999999999999999986 22233 35667778899889999999999999
Q ss_pred HHHHHh---------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 72 SKAIEI---------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 72 ~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
..|-.- ...+..+.|.+|..|...|++.+|+.+|.+|-.+
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 987532 2345668899999999999999999998887654
No 358
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=1 Score=40.33 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------h
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------P 82 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 82 (429)
+.++-..|..+-....+.++..+|++|..+ .|+.+..-...+.-.....+.++|++.|++++.+--.. .
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345555666667778899999999999875 46655555555655677788999999999998764322 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL----SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+.+-..+.++....++.+|-..+.+-... +..+......++.+...+-..++..|...+.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 34555678889999999988887765433 3333444445555555555444555555544
No 359
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=95.08 E-value=0.029 Score=51.24 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCeEEccccccCCCC------------c----HHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 250 ENPYLFNGDFVDRGSF------------S----VEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~------------s----~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
.+.+|++||++|+... . .++..++..|. ..-.|+++.||||...
T Consensus 36 ~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 36 VKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAVR 95 (243)
T ss_pred ccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCccc
Confidence 3579999999997310 1 12333333332 2467999999999753
No 360
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=95.03 E-value=0.042 Score=50.41 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=42.0
Q ss_pred eEEEccCCCCH---------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcH-----HHHHHHHHhhhhCCCeEEEecC
Q 014212 224 FTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRG 289 (429)
Q Consensus 224 ~~v~GDihG~~---------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~-----e~~~~l~~lk~~~p~~~~~lrG 289 (429)
++.++|+||.+ ..+..+++......+..-++..||+++.++.+. .++..+.++ .++ ++..|
T Consensus 3 i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~---g~d--~~~~G 77 (252)
T cd00845 3 ILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNAL---GYD--AVTIG 77 (252)
T ss_pred EEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhc---CCC--EEeec
Confidence 78889999876 555666666543322334577899999888654 455555444 223 23459
Q ss_pred Ccccc
Q 014212 290 NHESK 294 (429)
Q Consensus 290 Nhe~~ 294 (429)
|||.-
T Consensus 78 NHe~d 82 (252)
T cd00845 78 NHEFD 82 (252)
T ss_pred ccccc
Confidence 99953
No 361
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.21 Score=45.52 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
....++=.++.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++.++..++..|+.+.+........
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 334556677888999999999999999999999999999999999999999999999999999999998766555443
No 362
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.97 E-value=0.27 Score=49.66 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------------------NAVYYANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
+-+..|..-|..-++..+++.|++..++|...-.. +...|..++......|-++.-...|.+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34677888888888899999999988888753111 235677777777778888888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH-HHHHHHHHHHhHHHHHhhcCCc
Q 014212 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQ-KVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~-~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+.+.-..|..-.+.|..+.+..-+++|.+.|++.+.+- |.-.++|. .|-..-.+.|..+.+.|..+++
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 888888888888888888888888889999998888876 34444443 2222233334334555555555
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.94 E-value=0.75 Score=43.86 Aligned_cols=105 Identities=7% Similarity=-0.031 Sum_probs=78.1
Q ss_pred CcccHhHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAK------------KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
...+|.+.++|..+...--..- -.+..+..|++|++.+|++...+..+-.+..+.-+.++..+-++++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3567888888887776544332 2456778899999999999988888888888888888888999999
Q ss_pred HHhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 014212 75 IEIDPRYPKGYYRRGAAYLA---MGKFKEALKDFQQVKKL 111 (429)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~ 111 (429)
+..+|.+...|..+-..... .-.+++....|.++++.
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99999988887665433332 23466777777777764
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.92 E-value=0.38 Score=49.56 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHH
Q 014212 12 SRAEELKALANEAFR-----AKKYSQAIDLYSQAIE-------LNSQNAVYYANRAFAHTKLE-----EYGSAIQDASKA 74 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a 74 (429)
....+.+.+|.+++. .+|.+.|+.+|+.+.+ .. .+.+.+.+|.+|.+.. +.+.|+..|.++
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 345666677777764 4689999999999977 32 5567888999998853 678899999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 75 IEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
-.. .++.+.+.+|.++..-. +...|.++|..|... .+..+.+.++.++.
T Consensus 320 A~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 320 AEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred Hhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 877 57889999999998766 567999999988875 56778888888764
No 365
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=94.88 E-value=0.051 Score=52.37 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCCCCCCeEEccccccCCCCc--HHHHHHHHHhhhhCC----CeEEEecCCcccc
Q 014212 235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHESK 294 (429)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p----~~~~~lrGNhe~~ 294 (429)
.-+.+.++...+...++..+||||++|-|.++ -|--.....+|..+| ..++.+.||||.-
T Consensus 79 ~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 79 WYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIG 144 (410)
T ss_pred HHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCccccc
Confidence 33455666666666667899999999999874 444455555555554 4788889999954
No 366
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.76 E-value=0.59 Score=38.51 Aligned_cols=87 Identities=13% Similarity=-0.016 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
.-...+...........+.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+.+.-.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34456666677777788888888888877778888888888888888888999999988888888777778888888888
Q ss_pred HHHcCCH
Q 014212 92 YLAMGKF 98 (429)
Q Consensus 92 ~~~~g~~ 98 (429)
+..+|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 8888875
No 367
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.72 E-value=0.39 Score=41.44 Aligned_cols=88 Identities=19% Similarity=0.050 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECE 126 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~ 126 (429)
-..++..+...+++++|+..++.++....+. +-+-.+||.+...+|++++|+..+...-. ++. +..-...|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 4567888999999999999999998653331 34568899999999999999988764322 111 22245667777
Q ss_pred HHHHhHHHHHhhcCCc
Q 014212 127 KAVKKLKFEEAIAVPE 142 (429)
Q Consensus 127 ~~~~~~~~~~a~~~~~ 142 (429)
...|+ -.+|...|+
T Consensus 170 l~kg~--k~~Ar~ay~ 183 (207)
T COG2976 170 LAKGD--KQEARAAYE 183 (207)
T ss_pred HHcCc--hHHHHHHHH
Confidence 77776 456666666
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.70 E-value=1.1 Score=41.92 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCC
Q 014212 13 RAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 13 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~ 80 (429)
.+.+.+.+|..+.. ..+..+|..+|++|.+..-.. ..+...+|.+|..-. +...|...|.++-...
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 34566677777776 447888888888887764433 344667777766541 2336777777777664
Q ss_pred ChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 81 YPKGYYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 81 ~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
++.+.+.+|.+|..- .++.+|..+|.+|-+... ..+.+.++
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 677778888777542 367788888888888765 66666666
No 369
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.67 E-value=0.085 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
.++.++|.+|..+|++++|...+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888888775
No 370
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.66 E-value=0.08 Score=33.04 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
.++.++|..|..+|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3444555555555555555555555444
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.58 E-value=0.72 Score=43.99 Aligned_cols=91 Identities=8% Similarity=0.035 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 014212 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEE------------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (429)
Q Consensus 34 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 101 (429)
...|++.++.+|.+..+|..+....-..-. .+..+..+++|++.+|++...+..+-.+..+....++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 356889999999999999998766444322 45678899999999999999999888888899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 014212 102 LKDFQQVKKLSPNDPDAAQKVKE 124 (429)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~ 124 (429)
..-+++++..+|+++..|...-.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHH
Confidence 99999999999999988765543
No 372
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.39 E-value=0.44 Score=51.52 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 18 KALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
....+++...+.|++|+..|++.-.--|.- ..+.+..|....... .+.+|+..|++... .|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence 344567888899999999999999888764 567788887766532 47778888776543 3566667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
.|.+|..+|+++|-+++|..|++..|.+|..-.....+..++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 899999999999999999999999999988655544444333
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.41 Score=43.63 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
...++=..+...++++.|...-++.+.++|.++.-+.-.|.+|.++|.+..|++.++..++.-|+.+.+-.-.+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 344556678889999999999999999999999999999999999999999999999999999998877554443
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.11 E-value=0.29 Score=48.91 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=86.0
Q ss_pred HHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 16 ELKALANEAF-RAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 16 ~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+..++..|+ .+|+..+|+.++..++-..|.. -.++..+|.++.++|...+|--.+..|+.-.|.....++-+|.++
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~ 293 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIY 293 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHH
Confidence 3444555554 5789999999999999987774 356788999999999999998888888888787778899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
..++.+.....+|..+.+..|....
T Consensus 294 aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 294 AMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred HHHhhhhhhhhhhhhhhccCcchhH
Confidence 9999999999999999999886543
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.04 E-value=0.69 Score=44.42 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC-------------------------C------CHHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL---NS-------------------------Q------NAVYYANRAFAH 58 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p-------------------------~------~~~~~~~lg~~~ 58 (429)
.+...+..+..+...|+..+|+..++..++. .+ . .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999988871 11 0 134566667766
Q ss_pred HHh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 014212 59 TKL------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF-----------------KEALKDFQQVKKLSPN 114 (429)
Q Consensus 59 ~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~eA~~~~~~al~~~p~ 114 (429)
... ++.++++..|+++++++|....+|+.+|..+...=+. ..|+..|-+|+.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 667 7888999999999999999999999999877755221 3488888888888877
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.92 E-value=0.7 Score=37.35 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 13 RAEELKALANEAFRAK---KYSQAIDLYSQAIE-LNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+..+++|..+.+.. +.++.+..++..++ ..|. .-...+.++..++++++|+.|+.+.+..++.+|+|.++.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566788888888665 45678889999986 4454 34566788999999999999999999999999999888654
Q ss_pred HHHH
Q 014212 88 RGAA 91 (429)
Q Consensus 88 la~~ 91 (429)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4333
No 377
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.92 E-value=0.85 Score=37.61 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.....+-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+-.+..+-..-.++.|+..+++
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33444445588999999999988899999999999999999999999999999999999888889999999999988887
Q ss_pred HHH
Q 014212 132 LKF 134 (429)
Q Consensus 132 ~~~ 134 (429)
..+
T Consensus 94 p~W 96 (153)
T TIGR02561 94 AEW 96 (153)
T ss_pred hHH
Confidence 653
No 378
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.89 E-value=2.7 Score=42.43 Aligned_cols=126 Identities=10% Similarity=0.066 Sum_probs=108.9
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKG 84 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 84 (429)
...-++.+...|......-...|+++...-.|++++--.......|.+.+......|+.+-|-..+.++.++. |+.+..
T Consensus 289 vkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 289 VKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred cCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 3445677778888888889999999999999999999999999999999999999999999998888888765 566777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
+..-+..-...|+++.|...+++..+--|...++-..........++
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence 88888888899999999999999998889988877777666666666
No 379
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=93.82 E-value=0.18 Score=49.62 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=46.7
Q ss_pred eEEEccCCCC-------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhC---CCeEEEe
Q 014212 224 FTVCGDVHGQ-------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMC---PSAIYLS 287 (429)
Q Consensus 224 ~~v~GDihG~-------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~---p~~~~~l 287 (429)
+..+.|.|=. +..+..+++.+... ..+-+|.-||+-|++.-|.+++..+...-..- .-.||+|
T Consensus 3 ilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I 81 (390)
T COG0420 3 ILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI 81 (390)
T ss_pred eEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe
Confidence 5666777743 23333344443322 23568999999999988888887775554332 2479999
Q ss_pred cCCccccc
Q 014212 288 RGNHESKS 295 (429)
Q Consensus 288 rGNhe~~~ 295 (429)
.||||...
T Consensus 82 ~GNHD~~~ 89 (390)
T COG0420 82 AGNHDSPS 89 (390)
T ss_pred cCCCCchh
Confidence 99999654
No 380
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=1.5 Score=43.17 Aligned_cols=131 Identities=16% Similarity=0.060 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhC---CCC-
Q 014212 12 SRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQN---AVYYANRAFAHT-KLEEYGSAIQDASKAIEID---PRY- 81 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~- 81 (429)
.-+.++..+|..+...| +..+++++++..+...|.+ +.....+|.+++ -..+++.|...+++|..+. |.+
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence 34678889999999999 8899999999998887775 455666777654 4688999999999998764 333
Q ss_pred ---hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhHHHHHhhcCCccc
Q 014212 82 ---PKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAVKKLKFEEAIAVPESE 144 (429)
Q Consensus 82 ---~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~----~~~l~~~~~~~~~~~~~~a~~~~~~~ 144 (429)
-.+.-.|+.+|.... .+..|...+++|+++....|-. .+.++.++..-+ ++.-|++..+.+
T Consensus 85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk--D~~sA~elLavg 153 (629)
T KOG2300|consen 85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK--DFPSALELLAVG 153 (629)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc--cchhHHHHHhcc
Confidence 245666888888777 7889999999999998887743 344444444333 366777665533
No 381
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.60 E-value=0.29 Score=50.59 Aligned_cols=119 Identities=32% Similarity=0.456 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHhCCCChHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKL--EEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
...+......++.++..+++..|..-|..++.+-|. .+....+.+.|++++ ++|..++....-|+...|....+
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 345566778899999999999999999999988874 456677888888765 69999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
++..+.+|...++++-|++...-.....|.+..+..-+...+..+
T Consensus 130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999998888888999977766555555444
No 382
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.57 E-value=1.3 Score=45.78 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 16 ELKALANEAFRAK-----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 16 ~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
+.+.+|..|.+.. +++.|+.+|.++.+.. ++.+.+.+|.++.... ++..|.++|..|... .+..+.++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 5667788888743 7889999999998754 4556778888887665 678999999998765 78999999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 88 RGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 88 la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+|.+|..- -+...|..++.++-+.. ++.+.+.++..+
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 99999754 36789999999999987 556666665544
No 383
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=93.55 E-value=0.24 Score=43.63 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=52.0
Q ss_pred CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccc--cCCCCcHHHHHH-HHHhhhhCCCeEEEecCCcccccch
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILT-LFAFKCMCPSAIYLSRGNHESKSMN 297 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~v--drG~~s~e~~~~-l~~lk~~~p~~~~~lrGNhe~~~~~ 297 (429)
.++..+.|+||..+.+.+++...... ..+.+++.||+. ..|+.-...-.. +-.++. .-..|+.++||.|...+.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~~~v~ 80 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDPPEVI 80 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCChHHHH
Confidence 35888999999999999988876543 344688899999 888753322221 333332 347899999999966543
No 384
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.26 Score=44.40 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=72.8
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYS-QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
++++|++-+.|...-.+.-..|++. .-++..++++..+..+..+|..+-.+....++++.-+++..+.++.|-.|-.||
T Consensus 105 ~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 105 IEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred HHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 3455666666666666666666655 556666666666666666666666666666666666666666666666555555
Q ss_pred HHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 86 YRRGAAYLA-MG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 86 ~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
...--+... .| ..+.-+.+..+.+.+.|+|..+|..|..++.
T Consensus 185 N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 185 NQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred heeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 443221111 11 1234556666677777777777777766553
No 385
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.50 E-value=0.28 Score=45.46 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (429)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (429)
|..+|.+|+.+.|++..+|+.+|.++...|+.-+|+-+|-|++...--.+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888886655557777777766544
No 386
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.32 E-value=0.33 Score=29.60 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKD--FQQVKKLSPN 114 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~--~~~al~~~p~ 114 (429)
+.++.+|..+..+|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355555544
No 387
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.30 E-value=1.2 Score=35.12 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=53.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE-------LNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
+--++-.+-.++..+...|+|++++..-.+++. ++.+.. .+-+++|.++..+|+.++|+..|+.+-++
T Consensus 51 ~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 51 DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344667788899999999999999888888875 455543 44578899999999999999999998764
No 388
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.19 E-value=0.25 Score=44.18 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=47.0
Q ss_pred ceEEEccCCCCHHHHH----------------HHHHHcCCCCCCCCeEEccccccCCCC-----cHHHHHHHHHhhhhCC
Q 014212 223 HFTVCGDVHGQFYDLL----------------NIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCP 281 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~----------------~~l~~~~~~~~~~~~~~lGD~vdrG~~-----s~e~~~~l~~lk~~~p 281 (429)
+..|+.|+|=.+.... +.+...=.....+.+|++||+-.-.+. ..++-.++-.++..
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~-- 98 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER-- 98 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC--
Confidence 5899999996655443 222211011123469999999743332 35555555444432
Q ss_pred CeEEEecCCcccccchhhccc
Q 014212 282 SAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 282 ~~~~~lrGNhe~~~~~~~~~~ 302 (429)
.+++++||||...-.-..++
T Consensus 99 -evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 99 -EVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred -cEEEEeccCCCccccccccC
Confidence 48999999998876665554
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.16 E-value=1 Score=40.14 Aligned_cols=81 Identities=16% Similarity=0.033 Sum_probs=58.7
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQ-------AIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~-------A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (429)
.....+..+..+|..|-..++-+. |++.|.++++.... ...+.+.+|.+..+.|++++|..+|.+++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344678888999999999998554 55566666554322 25778899999999999999999999999
Q ss_pred HhCCCCh-HHHHHHH
Q 014212 76 EIDPRYP-KGYYRRG 89 (429)
Q Consensus 76 ~~~p~~~-~~~~~la 89 (429)
.....+. .....+|
T Consensus 193 ~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 193 GSKKASKEPKLKDMA 207 (214)
T ss_pred cCCCCCCcHHHHHHH
Confidence 8643332 2444444
No 390
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.14 E-value=1.1 Score=34.89 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCCHHHH
Q 014212 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKF-----------KEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 54 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~-----------~eA~~~~~~al~~~p~~~~~~ 119 (429)
+|.-+++.|++-+|++..+..+...+++. ..+..-|.++..+... -.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778999999999999999999988766 4556668888766532 469999999999999998888
Q ss_pred HHHHHH
Q 014212 120 QKVKEC 125 (429)
Q Consensus 120 ~~l~~~ 125 (429)
+.++.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 777765
No 391
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.12 E-value=0.17 Score=46.66 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
.+..-+.++..|...+....+.|-|.+--..|.++++..|.++..|.. -+.-+...++++.+...|.++++++|++|..
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 355667888899999999999999999999999999999999999976 4556778899999999999999999999988
Q ss_pred HHHH
Q 014212 85 YYRR 88 (429)
Q Consensus 85 ~~~l 88 (429)
|+..
T Consensus 179 w~ey 182 (435)
T COG5191 179 WIEY 182 (435)
T ss_pred HHHH
Confidence 7654
No 392
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.4 Score=42.37 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=84.7
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----HHH
Q 014212 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK----FKE 100 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~e 100 (429)
+.-.++-+.+...+++.+|++..+|+.+..++.+.+ ++..-++.++++++.||.|-.+|...-.+...... ..+
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 335677788899999999999999999999998775 47888999999999999999998777655554433 467
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
-+++..+++.-++.|-.+|.+...+...+
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 78889999999999999988887776543
No 393
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.93 Score=41.75 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 107 (429)
-+.-+.-....+++.+|...+..++...|++.++...++.+|...|+.++|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344556678899999999999999999999999999999999999999777665543
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.93 E-value=0.6 Score=35.52 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=41.4
Q ss_pred HHhhCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212 59 TKLEEYGSAIQDASKAIEIDPR---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (429)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 113 (429)
.+.|+|.+|++.+.+....... ...+..++|.++...|++++|+..+++|+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4567777777666666554221 245678899999999999999999999998864
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.93 E-value=0.57 Score=35.66 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=47.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 79 (429)
....+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..++.|+++-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456889999999998888764322 245678899999999999999999999998754
No 396
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.80 E-value=3 Score=40.83 Aligned_cols=124 Identities=14% Similarity=0.181 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHH---------hCC--
Q 014212 14 AEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIE---------IDP-- 79 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~---------~~p-- 79 (429)
+..+..-|..+.+.|. -++|+..++.+++..|.+...-. .-. .+-...|.+|+. .+-+.+. +.|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~-~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVF-LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 4556777888899988 88999999999998888764322 111 112222444332 1222222 122
Q ss_pred -CChHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 80 -RYPKGYYRR--GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 80 -~~~~~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+.+.-..| |.-++.+|+|.++.-+-.-..+.+| ++.++..+|.+....+. |++|+.++.
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~--Y~eA~~~l~ 519 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR--YQEAWEYLQ 519 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 233433444 3456688888888888888888888 78888888888766665 788887654
No 397
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.78 E-value=0.25 Score=30.50 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
++|..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888775
No 398
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=92.69 E-value=0.14 Score=45.14 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=42.5
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH--------------------------HHHHHh
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI--------------------------LTLFAF 276 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~--------------------------~~l~~l 276 (429)
++..+.|.||.++.+.++.+...-. ..+-++|+||++-....+.|-. .++..|
T Consensus 7 kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 7 KILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 5889999999999999988765322 2346999999986555544443 333333
Q ss_pred hhhCCCeEEEecCCcccccc
Q 014212 277 KCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 277 k~~~p~~~~~lrGNhe~~~~ 296 (429)
-..+--+++++||||....
T Consensus 86 -~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 86 -GELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp -HCC-SEEEEE--TTS-SHH
T ss_pred -HhcCCcEEEecCCCCchHH
Confidence 3356778889999997543
No 399
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.59 E-value=0.77 Score=45.19 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
+.+...|........+.+.+.+--..|.+++...|+++..|..-|.-.+..+. .+.|...+.++++.+|+++..|..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 34566666666666677779999999999999999999999999988888776 999999999999999999987654
No 400
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.47 E-value=0.79 Score=42.31 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (429)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 109 (429)
|..=+...+++++ .....++..++..+...|+++.+...+++.+.++|-+-..|..+-.+|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 6666666666554 23467888999999999999999999999999999999999999999999999999999999888
Q ss_pred Hh
Q 014212 110 KL 111 (429)
Q Consensus 110 ~~ 111 (429)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 75
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.46 E-value=0.66 Score=45.37 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=89.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 101 (429)
...+..|+...|-+-...+++..|.++..-...+.+...+|+|+.|.+...-+-..-..-..+.-.+-.....+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 44567899999999999999999999999999999999999999999988777665555555666666777889999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...-.-.+...-+++++..--+....+++- ++++...+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~--~d~~~~~wk 415 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQL--FDKSYHYWK 415 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhH--HHHHHHHHH
Confidence 988888877666666655444443344443 455544433
No 402
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=92.39 E-value=0.19 Score=46.82 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=37.1
Q ss_pred eEEEccCCCCH----------------HHHHHHHHHcCCCCCCCCeEE-ccccccCCCCc-----------HHHHHHHHH
Q 014212 224 FTVCGDVHGQF----------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSFS-----------VEVILTLFA 275 (429)
Q Consensus 224 ~~v~GDihG~~----------------~~l~~~l~~~~~~~~~~~~~~-lGD~vdrG~~s-----------~e~~~~l~~ 275 (429)
++..+|+||.+ ..+..++++..... .+.+++ .||+++..+.+ ..++..+..
T Consensus 3 il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~ 81 (277)
T cd07410 3 ILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAEN-PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNA 81 (277)
T ss_pred EEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcC-CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHh
Confidence 67778888876 33555666554322 232333 69999866532 224455544
Q ss_pred hhhhCCCeEEEecCCccc
Q 014212 276 FKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 276 lk~~~p~~~~~lrGNhe~ 293 (429)
+. ++ ++..||||.
T Consensus 82 ~g---~d--~~~lGNHe~ 94 (277)
T cd07410 82 LG---YD--AGTLGNHEF 94 (277)
T ss_pred cC---CC--EEeecccCc
Confidence 43 33 445699995
No 403
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.35 E-value=1.6 Score=37.62 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
..++..+|..|.+.|++++|+++|.++...... ..+.++++-.+....+++.....+..++-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998775433 24567888888899999999999999988764
No 404
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.19 E-value=7.9 Score=36.00 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHHhhCHHH---HHHHHHH
Q 014212 12 SRAEELKALANEAFRAK-KYSQAIDLYSQAIEL----NSQ----------NAVYYANRAFAHTKLEEYGS---AIQDASK 73 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~----~p~----------~~~~~~~lg~~~~~~g~~~~---A~~~~~~ 73 (429)
.-+..+++.|...+..+ +++.|+..++++.++ .+. ....+..++.+|.+.+.++. |.+..+.
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44577899999999999 999999999999887 211 13456778899988887653 4444444
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (429)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 113 (429)
+-...|+.+..++..=.+....++.+++.+.+.+.+..-+
T Consensus 113 l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 113 LESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4455677777764444444458889999999999988654
No 405
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=92.05 E-value=0.26 Score=45.77 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=38.0
Q ss_pred eEEEccCCCC----HHHHHHHHHHcCCCCCCCCeEEccccc-cCCCCcH------HHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 224 FTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 224 ~~v~GDihG~----~~~l~~~l~~~~~~~~~~~~~~lGD~v-drG~~s~------e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
..++||.-.. ...+.+.+...-.....+-+|++||+| +-|..+. +.+.-++... ...--++.+.||||
T Consensus 3 f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~-~~~~P~~~v~GNHD 81 (277)
T cd07378 3 FLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAP-SLQVPWYLVLGNHD 81 (277)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccch-hhcCCeEEecCCcc
Confidence 6788996543 134444433322112345699999997 5554221 2222232211 12346888999999
Q ss_pred cc
Q 014212 293 SK 294 (429)
Q Consensus 293 ~~ 294 (429)
..
T Consensus 82 ~~ 83 (277)
T cd07378 82 YS 83 (277)
T ss_pred cC
Confidence 75
No 406
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=7.2 Score=38.55 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-N--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------- 81 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------- 81 (429)
..+..++.+|......+.|+.|...|..|+++-.. + +.+-.++|..|.+.++-+.-.+. .-.+.|.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~---ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKA---LDLIGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHH---HHhcCCCCCCcchHH
Confidence 35678889999999999999999999999986433 3 34456789999998765533322 22344542
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 82 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
..+++-.|...+.++++.||...+.+.++.. +..+....-+..+..++
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHH
Confidence 2457778888889999999999999999987 44443333333333344
No 407
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=1.3 Score=44.98 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
.+.+-|.-.++..+|..|++.|...+..-|. ++.....++.||..+.+.+.|.++++.|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4566677889999999999999999987664 4567788999999999999999999999999999887665555
Q ss_pred HHHHHHHh
Q 014212 124 ECEKAVKK 131 (429)
Q Consensus 124 ~~~~~~~~ 131 (429)
......+.
T Consensus 436 ~~~~~E~~ 443 (872)
T KOG4814|consen 436 QSFLAEDK 443 (872)
T ss_pred HHHHHhcc
Confidence 54444444
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.74 E-value=2.2 Score=41.28 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=64.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------------CC------------CCh---HHHHHHH
Q 014212 39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------DP------------RYP---KGYYRRG 89 (429)
Q Consensus 39 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la 89 (429)
..++.+|.....+..++.++.++|+++.|.+..++|+-. ++ .|. .+.++..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345678999999999999999999999999988888621 11 121 3566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQK 121 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~ 121 (429)
..+.+.|-+.-|.+..+-.+.++|. +|-.-..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll 143 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL 143 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 8888999999999999999999998 6654333
No 409
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.64 E-value=0.7 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhCHHHHHHH--HHHHHHhCC
Q 014212 51 YANRAFAHTKLEEYGSAIQD--ASKAIEIDP 79 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~--~~~al~~~p 79 (429)
+..+|..+.++|++++|+.. |+-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44445555555555555555 224444443
No 410
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=1.5 Score=44.08 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 014212 32 QAIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ-V 108 (429)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~-a 108 (429)
-|+..+...+.++|.++..+.. +...+...++...|......++..+|++..++.+||.+....|....|...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3666677777788888877544 477778889998999999999999999999999999988888877666666555 9
Q ss_pred HHhCCCCHHHHHHHHHHHH
Q 014212 109 KKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 109 l~~~p~~~~~~~~l~~~~~ 127 (429)
....|++......+-.++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HhcCcchHHHHhhHHHHHH
Confidence 9999999998888755544
No 411
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.57 E-value=0.64 Score=46.00 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=69.6
Q ss_pred hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212 61 LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (429)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a 137 (429)
.+....|+..|.++++..|.....+.+.|.++.+.+ +.-.|+..+..|++++|....+++.++.++..+++ +.+|
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r--~~ea 464 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR--YLEA 464 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh--HHHh
Confidence 445778999999999999999999999999988764 55678889999999999999999999999999998 6777
Q ss_pred hcCCc
Q 014212 138 IAVPE 142 (429)
Q Consensus 138 ~~~~~ 142 (429)
+....
T Consensus 465 l~~~~ 469 (758)
T KOG1310|consen 465 LSCHW 469 (758)
T ss_pred hhhHH
Confidence 77655
No 412
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=2.7 Score=45.06 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
.+.+..|..+|.+-.+.|...+|++.|-+| +++..|...-.+..+.|.|++-+.++.-|.+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 355778999999999999999999999887 78888888888899999999998888777653
No 413
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.45 E-value=0.36 Score=29.82 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (429)
.++..+|.+-+...+|++|++.|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356777888888888888888888887763
No 414
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.42 E-value=2.1 Score=31.10 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR---GAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~eA~~~~~~al~ 110 (429)
....|.-++...+.++|+..++++++..++.+..+..+ ..+|.+.|+|.+++.+-.+=+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788999999999999999988877655554 5678889999888776544433
No 415
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.40 E-value=4.1 Score=37.93 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=72.6
Q ss_pred HHHhcCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHh----CC---CC------
Q 014212 24 AFRAKKYSQAIDLYSQAIELN----SQN----AVYYANRAFAHTKLE-EYGSAIQDASKAIEI----DP---RY------ 81 (429)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~~------ 81 (429)
..++|+++.|..++.|+-... |+. +..+++.|.-....+ ++++|..++++|.++ .. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987654 332 456788888888899 999999999999887 21 11
Q ss_pred -hHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHH
Q 014212 82 -PKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDAAQ 120 (429)
Q Consensus 82 -~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~ 120 (429)
...+..++.+|...+.++ +|....+.+-...|+.+....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~ 125 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFL 125 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 235677899998888764 466666666666788777663
No 416
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.38 E-value=4.2 Score=42.78 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIE---------------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (429)
|.=-|..+-..|+.+.|+.+|..|-. ....+..+.+.+|..|...|++.+|+..|.+|-
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33446677788899999888888743 234567789999999999999999999988875
Q ss_pred Hh
Q 014212 76 EI 77 (429)
Q Consensus 76 ~~ 77 (429)
..
T Consensus 995 af 996 (1416)
T KOG3617|consen 995 AF 996 (1416)
T ss_pred HH
Confidence 44
No 417
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.14 E-value=0.35 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQ 106 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~ 106 (429)
+++.+|.++..+|+.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555555555555555555443
No 418
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.87 E-value=0.77 Score=42.52 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
|..+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++.....++.+.-+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999997766678899999888887
No 419
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.78 E-value=2.9 Score=40.51 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCCC-----ChHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPR-----YPKGYY 86 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~ 86 (429)
-.+++.....+.++|-+..|++..+-.+.++|. |+..-.. +=....+.++|+--++.++........ -|..-+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 356777888899999999999999999999999 7655443 444446678888777777765542111 234667
Q ss_pred HHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q 014212 87 RRGAAYLAMGKF---------------KEALKDFQQVKKLSPND 115 (429)
Q Consensus 87 ~la~~~~~~g~~---------------~eA~~~~~~al~~~p~~ 115 (429)
..|.++..+++- ++|...+++|+...|.-
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888899988888 89999999999987653
No 420
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.69 E-value=2.4 Score=41.40 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (429)
...-|..++.+|+|.++.-+-.=..++.| ++.++..+|.|++..++|++|-.++.
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33445556666666666665555556666 56666666666666666666666553
No 421
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.54 E-value=1.8 Score=40.08 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (429)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 143 (429)
|..-+...+++++- ....++..++..+...|+++.+.+.+++.+..+|.+..++..+-..+...|+ ...|+..|++
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence 66666666666654 4677888899999999999999999999999999999999988888888887 5677766664
Q ss_pred ccc
Q 014212 144 ERH 146 (429)
Q Consensus 144 ~~~ 146 (429)
-..
T Consensus 213 l~~ 215 (280)
T COG3629 213 LKK 215 (280)
T ss_pred HHH
Confidence 333
No 422
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.47 E-value=7.7 Score=37.34 Aligned_cols=120 Identities=15% Similarity=0.005 Sum_probs=72.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CCCh---HHHHHHHHHHHH
Q 014212 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRYP---KGYYRRGAAYLA 94 (429)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~---~~~~~la~~~~~ 94 (429)
-....+.|+.+.|..+-+++.++.|.-++++...-......|+++.|++..+...+.. ++-. .+-..-+.+...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3344567778888888888888888888887777777778888888887776654432 2211 121212222221
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 95 -MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 95 -~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+...|...-.+++++.|+...+-..-+..+..-++ ..++-...+
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~--~rKg~~ilE 287 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN--LRKGSKILE 287 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc--hhhhhhHHH
Confidence 1245667777777777888776665555555554444 444444444
No 423
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=89.99 E-value=1.4 Score=43.31 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=88.2
Q ss_pred ceEEEccCCC-CHHHHHH----HHHHcCCCC----CCCCeEEccccccC-CCC-----cH------HHHHHHHHhhhhCC
Q 014212 223 HFTVCGDVHG-QFYDLLN----IFELNGLPS----EENPYLFNGDFVDR-GSF-----SV------EVILTLFAFKCMCP 281 (429)
Q Consensus 223 ~~~v~GDihG-~~~~l~~----~l~~~~~~~----~~~~~~~lGD~vdr-G~~-----s~------e~~~~l~~lk~~~p 281 (429)
.+..++|+|- ...-+.. .++.++-+. .-.-++..||.||. |-. .+ |-...+..+...-|
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp 306 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVP 306 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCC
Confidence 4788899996 2222222 333322221 11334556799992 211 11 12222322322223
Q ss_pred --CeEEEecCCcccccchhhc-cchhhhhcccchHHHHHHHHHhccCcccceec-CeEEEEecCccCCCCCCcccccccc
Q 014212 282 --SAIYLSRGNHESKSMNKIY-GFEGEVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGVKLSDIKTID 357 (429)
Q Consensus 282 --~~~~~lrGNhe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~~~~~~~i~~~~ 357 (429)
=.|++.+||||.--..... .+..... .++...+-.|-.=|.-.-++ .+++..|| ++++||.+.-
T Consensus 307 ~~I~v~i~PGnhDa~r~a~PQp~~~~~~k-----slf~~~n~~~v~NP~~~~l~G~~vL~~hG-------~sidDii~~v 374 (481)
T COG1311 307 EHIKVFIMPGNHDAVRQALPQPHFPELIK-----SLFSLNNLLFVSNPALVSLHGVDVLIYHG-------RSIDDIIKLV 374 (481)
T ss_pred CCceEEEecCCCCccccccCCCCcchhhc-----ccccccceEecCCCcEEEECCEEEEEecC-------CCHHHHHhhC
Confidence 4578889999976554333 2222222 22322222222224333444 47888886 4666666542
Q ss_pred CC--CCCCCC------------CcccccccCCCCCCCCCCCCCCCCcEEEEEeeccccccCceeecCCeEEEEcCCCCC
Q 014212 358 RF--CEPPEE------------GLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNY 422 (429)
Q Consensus 358 r~--~~~~~~------------~~~~~~lw~dp~~~~~~~~~~~~~~~~~iir~h~~~~~g~~~~~~~~~~t~fs~~~y 422 (429)
.. .+.+.. +..-+-+|.-|.... ...-..-.. .++.||+. ..|+....++++|..+|=+..
T Consensus 375 P~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD-~lVIeevPD--v~~~Ghvh-~~g~~~y~gv~~vns~T~q~q 449 (481)
T COG1311 375 PGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD-YLVIEEVPD--VFHTGHVH-KFGTGVYEGVNLVNSGTWQEQ 449 (481)
T ss_pred CCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC-ceeeccCCc--EEEEcccc-ccceeEEeccceEEeeeecch
Confidence 21 111111 222334555554311 111111111 26789997 488888888777777765543
No 424
>PLN02533 probable purple acid phosphatase
Probab=89.74 E-value=0.52 Score=46.77 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=36.0
Q ss_pred CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcH---HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV---EVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~---e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
.++.++||++-. ......++..... ..+-+++.||++.-+.... +-..++-.+... --++.+.||||..
T Consensus 140 ~~f~v~GDlG~~-~~~~~tl~~i~~~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~--~P~m~~~GNHE~~ 211 (427)
T PLN02533 140 IKFAVSGDLGTS-EWTKSTLEHVSKW-DYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQ--RPWMVTHGNHELE 211 (427)
T ss_pred eEEEEEEeCCCC-cccHHHHHHHHhc-CCCEEEEcCccccccchHHHHHHHHHHhhhHhhc--CceEEeCcccccc
Confidence 358899998532 1111222222222 2345889999997543321 112222222112 3467789999975
No 425
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=18 Score=35.19 Aligned_cols=175 Identities=11% Similarity=0.064 Sum_probs=109.0
Q ss_pred HhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 26 RAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKL------------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 26 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
..|.+ .++++.=.+.+..+|+...+|...-.++... .-+++-+.....+++.+|+...+|+.+..++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 44555 4677778888889999988887654444322 2345667788889999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccC
Q 014212 93 LAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEG 170 (429)
Q Consensus 93 ~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 170 (429)
.+.+. +..-++.++++++.+|.+-.+|.....+....... .. ...+....-.+.+.-++.+..+.+.-
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~-----~~-----~~~~El~ftt~~I~~nfSNYsaWhyR 189 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS-----RN-----LEKEELEFTTKLINDNFSNYSAWHYR 189 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc-----cc-----cchhHHHHHHHHHhccchhhhHHHHH
Confidence 98874 57888999999999999988887776665444331 00 11111222223333333333332211
Q ss_pred CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCee
Q 014212 171 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLV 214 (429)
Q Consensus 171 ~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~ 214 (429)
. -.+..+...-..+..+++..+..=++....++-.+|.-.
T Consensus 190 s----~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 190 S----LLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred H----HHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 1 111111111122334566667777777777777776654
No 426
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.57 E-value=1.7 Score=35.85 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 62 (429)
....|...+..|++..|.+..+.++..+|++..+...++.++.++|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555444444444443
No 427
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=89.48 E-value=0.014 Score=55.07 Aligned_cols=100 Identities=4% Similarity=-0.220 Sum_probs=72.1
Q ss_pred CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc----chHHHHHHHHHhc
Q 014212 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL----SETFVELFAEVFC 323 (429)
Q Consensus 248 ~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 323 (429)
+.....|+++++++++.++++.+.+-+..+..+...-..+++||+.. ++++.++.-.- ...+++..++.+.
T Consensus 46 ~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~-----~~~R~~LVlp~l~S~riyvid~~~ep~~ 120 (476)
T KOG0918|consen 46 PDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDS-----SFKRRYLVLPSLNSGRIYVIDVKTEPRK 120 (476)
T ss_pred CcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCc-----chhhhheeecccccCceEEEEeccCcCc
Confidence 44456899999999999999999999999888777777789999433 33332221111 2346667788888
Q ss_pred cCcccceecCeEEEEecCccCCCCCCccccc
Q 014212 324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIK 354 (429)
Q Consensus 324 ~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~ 354 (429)
.++...+.+ ++++.||++ +|.......+.
T Consensus 121 ~~l~k~i~~-~il~~~~l~-~Pht~hcla~g 149 (476)
T KOG0918|consen 121 PSLEKTIDP-DILEKTGLA-CPHTSHCLASG 149 (476)
T ss_pred cceeeeech-hhHhhcCCc-CCcccccccCC
Confidence 888887756 999999998 77654443333
No 428
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.41 E-value=0.49 Score=26.32 Aligned_cols=21 Identities=14% Similarity=-0.219 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHH
Q 014212 51 YANRAFAHTKLEEYGSAIQDA 71 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~ 71 (429)
...+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554443
No 429
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.34 E-value=1.7 Score=37.92 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCH
Q 014212 24 AFRAKKYSQAIDLYSQAIEL-NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKF 98 (429)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~ 98 (429)
++.+-.-++|...|-++-.. .=+++...+.+|..|. ..|.++|+..+.+++++.+. +++.+..||.++..+|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 33443446777777665432 1246888888887665 67889999999999998654 588999999999999999
Q ss_pred HHHHH
Q 014212 99 KEALK 103 (429)
Q Consensus 99 ~eA~~ 103 (429)
++|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 99863
No 430
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=89.22 E-value=0.54 Score=44.08 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=40.0
Q ss_pred eEEEccCCCCHH--------------HHHHHHHHcCCCCCCCCeEEccccccCCCC-c-----HHHHHHHHHhhhhCCCe
Q 014212 224 FTVCGDVHGQFY--------------DLLNIFELNGLPSEENPYLFNGDFVDRGSF-S-----VEVILTLFAFKCMCPSA 283 (429)
Q Consensus 224 ~~v~GDihG~~~--------------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~-s-----~e~~~~l~~lk~~~p~~ 283 (429)
+....|+||++. .+..++++.....+..-++..||+++..+. | ..++..+-++.. +
T Consensus 3 il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~---D- 78 (288)
T cd07412 3 ILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV---D- 78 (288)
T ss_pred EEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC---e-
Confidence 677789998754 355666665433333346668999986664 2 245555555532 3
Q ss_pred EEEecCCcccc
Q 014212 284 IYLSRGNHESK 294 (429)
Q Consensus 284 ~~~lrGNhe~~ 294 (429)
++..||||.-
T Consensus 79 -a~t~GNHefd 88 (288)
T cd07412 79 -ASAVGNHEFD 88 (288)
T ss_pred -eeeecccccc
Confidence 2445999953
No 431
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.15 E-value=4.4 Score=40.51 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=65.4
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
..+.+|.+..+|+.+-..+..+ -++++.+.|++.+...|..+.+|.......+..++|+.....|.+++..
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3467899999999999988877 9999999999999999999999999999999999999999999999864
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.99 E-value=7.8 Score=36.10 Aligned_cols=108 Identities=22% Similarity=0.173 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC-hHHH
Q 014212 15 EELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY-PKGY 85 (429)
Q Consensus 15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~ 85 (429)
.+...+|..+.. ..+..+|+.+|+.+ .....+.+.+++|.+|.. ..+..+|..+|++|....-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 345555555543 34677788888844 345567777888888776 347888888888887763222 2337
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 86 YRRGAAYLAMG-------KFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 86 ~~la~~~~~~g-------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+.+|.+|..-. ....|...|.++-... ++.+...++.++
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 77777776642 2236788888777765 666666776554
No 433
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=88.97 E-value=3 Score=45.91 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=88.5
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID- 78 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 78 (429)
..+|+.+..+..++..+...+++++|+..-.++.-+ .|+....+.+++...+..+....|+..+.++..+.
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 347888999999999999999999999988777543 35567788899988899999999999999998763
Q ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 79 -------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 79 -------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
|.-+....+++.++...++++.|+.+.+.|++..
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445566788999999999999999999999865
No 434
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.82 E-value=14 Score=31.62 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (429)
.+.-.||.+-.+.|++.+|...|.+... +...|..-.+.+.+
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 3455567777777777777777776655 44444444444433
No 435
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=88.60 E-value=0.85 Score=41.95 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=37.9
Q ss_pred eEEEccCCCCH----------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEec
Q 014212 224 FTVCGDVHGQF----------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSR 288 (429)
Q Consensus 224 ~~v~GDihG~~----------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lr 288 (429)
+..+.|+||++ ..+..++++.... +..-++..||.++..+.+ ..++..+-.+ -.+. +..
T Consensus 3 il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~---g~d~--~~~ 76 (257)
T cd07408 3 ILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAV---GYDA--VTP 76 (257)
T ss_pred EEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhc---CCcE--Ecc
Confidence 67788999874 4455566655433 234466679999876643 2333333333 2232 346
Q ss_pred CCccc
Q 014212 289 GNHES 293 (429)
Q Consensus 289 GNhe~ 293 (429)
||||.
T Consensus 77 GNHef 81 (257)
T cd07408 77 GNHEF 81 (257)
T ss_pred ccccc
Confidence 99995
No 436
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.34 E-value=9 Score=36.91 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
+-.+...++...-.|+++.|.+-|+..+. +|..-. -+..|-..-..+|+.+.|..+.+++-...|.-+.++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34455566667777777777777766542 332111 1111112223567777777777777777777776666666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 014212 93 LAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~ 110 (429)
...|+++.|++..+...+
T Consensus 199 ~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 199 CAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HhcCChHHHHHHHHHHHH
Confidence 777777777777665554
No 437
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.32 E-value=5.3 Score=34.89 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=55.3
Q ss_pred hhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHhHHHH
Q 014212 61 LEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN----DPDAAQKVKECEKAVKKLKFE 135 (429)
Q Consensus 61 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~ 135 (429)
.|+ ++|...|.++-.-. -++++..+.||..|. .-+.++|+..+.+++++.+. ++++...|+.++...++ ++
T Consensus 120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~--~e 195 (203)
T PF11207_consen 120 FGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN--YE 195 (203)
T ss_pred cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc--hh
Confidence 344 56766665443221 147888888888776 66788999999999998754 48899999999999888 66
Q ss_pred Hhhc
Q 014212 136 EAIA 139 (429)
Q Consensus 136 ~a~~ 139 (429)
+|..
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 6643
No 438
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=88.23 E-value=0.96 Score=41.78 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCCCCCe-EEccccccCCCCcH-----HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 234 FYDLLNIFELNGLPSEENPY-LFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 234 ~~~l~~~l~~~~~~~~~~~~-~~lGD~vdrG~~s~-----e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+..+..++++.......+.+ +..||+++..+.+. .++..+-.+ +- -++. ||||..
T Consensus 35 ~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g~-da~~-GNHefd 95 (264)
T cd07411 35 FAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALNAL----GV-DAMV-GHWEFT 95 (264)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHHhh----CC-eEEe-cccccc
Confidence 44455566654322122334 45899998776542 344444443 22 2444 999953
No 439
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.84 E-value=3.3 Score=40.04 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=62.1
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhC--------CCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 55 AFAHTKLEEYGSAIQDASKAIEID--------PRYP----------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--------p~~~----------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
|..++++++|..|..-|..|+++- |..+ ..--.|..||..+++.+-|+..-.+.+-++|.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 445666777777777777766652 2211 1234588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhh
Q 014212 117 DAAQKVKECEKAVKKLKFEEAI 138 (429)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~a~ 138 (429)
.-+...+.+.+.+.+ |.+|-
T Consensus 263 rnHLrqAavfR~LeR--y~eAa 282 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER--YSEAA 282 (569)
T ss_pred hHHHHHHHHHHHHHH--HHHHH
Confidence 999999999999888 44443
No 440
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.82 E-value=3.7 Score=42.25 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=66.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+.....++.++|..+.....|++|.++|.+.= ..-+...|++.+.+|++-.. ....-|++.+.+-.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGELEV----LARTLPEDSELLPVM 858 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHH
Confidence 344556788888888888888888888888742 23456778888877775443 344458899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~a 108 (429)
|..+...|.-++|+++|-+.
T Consensus 859 a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhc
Confidence 99999999999999887553
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.97 E-value=16 Score=34.41 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------ 78 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------ 78 (429)
-+..-+...+..+.++-++....|++++|.-+.+|..++.-- .--..+|.+.+++|++.-
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 345556777888889999999999999999999998887542 233456666666666431
Q ss_pred -----CCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212 79 -----PRYPK--GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (429)
Q Consensus 79 -----p~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~~p 113 (429)
..+.. ...++|.|-.++|+..||++.++...+-.|
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 01222 345689999999999999999998888777
No 442
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.44 E-value=2.8 Score=38.64 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 108 (429)
...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--+|...|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334566677777777777777777777777777777777777777766666666554
No 443
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.29 E-value=25 Score=37.52 Aligned_cols=101 Identities=19% Similarity=0.067 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ--N-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (429)
+++......|.....++++.+|.....++...-+. . +...-..|.+....|++++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34556667788889999999999998888764333 1 3344556888889999999999999999988764
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
..++..+|.+..-.|++++|..+.+++.++.
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999884
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.25 E-value=19 Score=35.22 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=51.0
Q ss_pred ccHhHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH--HHHhhCHHHHHHHHHHHHHh
Q 014212 9 SSVSRA--EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAFA--HTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 9 ~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~--~~~~g~~~~A~~~~~~al~~ 77 (429)
.+|... ......+..+++.++|..|.+.+..+.+.-|... ..+..++.+ ++..-++++|.+.+++.+..
T Consensus 124 ~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 124 ENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445544 3667888999999999999999999998534433 344555444 46778999999999987754
No 445
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=85.87 E-value=0.56 Score=47.58 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=32.1
Q ss_pred CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
-+++-.+||+-||||.+-.+++.|+.. ..|=+-=||||.
T Consensus 185 VDhLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDI 223 (640)
T PF06874_consen 185 VDHLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDI 223 (640)
T ss_pred hhheeecccccCCCCChhHHHHHHhcC-----CCccccccchHH
Confidence 346999999999999999999999865 344555699993
No 446
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=14 Score=35.83 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----CCChH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEID----PRYPK 83 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~ 83 (429)
+..|+.+...|-..++...-...+...++. +.. .+...+.+-.+|...+.|++|-..-.++.--+ .+.+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 445666666666677755444444443332 222 24445566788888899999988777665211 13456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
..|.+|.+..-+++|..|.+++-+|+...|.+.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 778899999999999999999999999999843
No 447
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.79 E-value=11 Score=44.43 Aligned_cols=116 Identities=17% Similarity=0.086 Sum_probs=90.3
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CC-------
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PR------- 80 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~------- 80 (429)
-+...++.|.+.|++....|+++.|-.+.-+|.+.. -+.++..+|..+++.|+-..|+..+++.++.+ |+
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 355667899999999999999999999999988766 57788899999999999999999999999764 22
Q ss_pred ---------ChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 81 ---------YPKGYYRRGAAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 81 ---------~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
...+.+.++.-..+.+++ ++-+..|+.+.+..|....-++.+|..+
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 112344444444455554 4567889999999998777777777443
No 448
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.69 E-value=25 Score=31.22 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=56.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
-...+.+.+..++|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-++.|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678889999999999999999999999988888999999999999999999999999764
No 449
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.68 E-value=2.1 Score=42.01 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|..+......+.+.-..|+|+.|......+-..-.....+...+-.-.+.+|++++|....+-.+.-.-++++..--.|.
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~ 399 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG 399 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence 33444455667778888999999888877766554555555556677889999999999988888776677777766677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
.-..+|-+++|.-.+++.+.++|..
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCChh
Confidence 7778899999999999999998753
No 450
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=85.30 E-value=1.8 Score=36.74 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=43.4
Q ss_pred CceEEEccCCCCHHH-HHHHHHHcCCCCCCCCeEEccccc--cCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 222 KHFTVCGDVHGQFYD-LLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 222 ~~~~v~GDihG~~~~-l~~~l~~~~~~~~~~~~~~lGD~v--drG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
+.+.|+|+-.-.+.. ..+-.. +...+.+.++.-||+- =|=++..+=+.+|-.| |+.-+++|||||.+-
T Consensus 17 KpM~vFGe~W~gh~ekI~k~W~--~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 17 KPMEVFGEPWSGHHEKIKKHWR--SKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred CceeecCCcccCchHHHHHHHH--hcCChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 347777776544443 333222 2233445577779985 4556677777777665 899999999999664
No 451
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.98 E-value=3.5 Score=38.00 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
.+...+..|...|.+.+|+++-++++.++|-+...+..+-..+..+||--.|...|++-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34456788899999999999999999999999999999999999999988888777664
No 452
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.50 E-value=2.8 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=18.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212 28 KKYSQAIDLYSQAIELNSQNAVYYANRAF 56 (429)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 56 (429)
|+++.|...|+++++..|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666665543
No 453
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.12 E-value=7.2 Score=43.17 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=88.9
Q ss_pred CCCCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 3 NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 3 ~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
+.......|++...+.+++...+..++...|+..+.++..+ .|..+....+++.++...++++.|+.+.+.|
T Consensus 1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 44456678999999999999999999999999999999875 4666777789999999999999999999999
Q ss_pred HHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 75 IEIDP--------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 75 l~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
+...- .....+..+|..+..++++..|+...+..+.+
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 98642 24556777888888888887777777666654
No 454
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=83.38 E-value=3.3 Score=38.88 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=39.8
Q ss_pred EEccCCCC--HHHHHHHHHHcCCC-CCCCCeEEccccccCCCCcH--H------HHHHHHHhhhhCC-CeEEEecCCccc
Q 014212 226 VCGDVHGQ--FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--E------VILTLFAFKCMCP-SAIYLSRGNHES 293 (429)
Q Consensus 226 v~GDihG~--~~~l~~~l~~~~~~-~~~~~~~~lGD~vdrG~~s~--e------~~~~l~~lk~~~p-~~~~~lrGNhe~ 293 (429)
-.|+.... ...+..+++..... +..+-+|+.||+|+.+.... + .-.+...++..+| -.|+.+.||||.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~ 121 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS 121 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 34554422 24444555543221 34456899999998886531 1 1122222333333 468999999998
Q ss_pred ccch
Q 014212 294 KSMN 297 (429)
Q Consensus 294 ~~~~ 297 (429)
...+
T Consensus 122 ~p~~ 125 (296)
T cd00842 122 YPVN 125 (296)
T ss_pred Cccc
Confidence 6543
No 455
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.16 E-value=64 Score=33.80 Aligned_cols=110 Identities=20% Similarity=0.102 Sum_probs=77.4
Q ss_pred cHhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--
Q 014212 10 SVSRAEELKALANEAF-RAKKYSQAIDLYSQAIELNSQ--NA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-- 80 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 80 (429)
...++.+.+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+... |...++++++.--.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 3456778899999998 678999999999999887643 22 23445678888887766 99999999887544
Q ss_pred --ChHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q 014212 81 --YPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQ 120 (429)
Q Consensus 81 --~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~ 120 (429)
.+...+++- ..+...+++..|++.++...... ..++.+..
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 222233332 22223379999999999998876 45555433
No 456
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.15 E-value=10 Score=35.73 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (429)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 106 (429)
+|..-..+|.-.....|+ +.+-.|++.+..+..-.+.++...+..... -..+-..+--.|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 556666666666666665 334466676666666667777766655543 12344456677999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 014212 107 QVKKLSPNDPDAAQKVKE 124 (429)
Q Consensus 107 ~al~~~p~~~~~~~~l~~ 124 (429)
+++.+.++..+..+....
T Consensus 390 rAi~La~~~aer~~l~~r 407 (415)
T COG4941 390 RAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 999999998877665544
No 457
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.14 E-value=9.7 Score=27.53 Aligned_cols=31 Identities=29% Similarity=0.242 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
..+..+...|..+-+.|++++|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456677778888888888888888777765
No 458
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=82.82 E-value=2.5 Score=38.86 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 231 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 231 hG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
.|.+..+..++++.....+..-++..||+++.++.+ ..++..+-.+.. -+...||||.
T Consensus 20 ~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-----d~~~~GNHef 82 (257)
T cd07406 20 VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-----DLACFGNHEF 82 (257)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-----cEEeeccccc
Confidence 456777878887765433333466679999877532 455565555532 2456799995
No 459
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.79 E-value=12 Score=33.20 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
..+.+.+...+|+...+.-++.+|.+......+-.++.-.|++++|...++-+-++.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34677888999999999999999999999999999999999999999999999999998754
No 460
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=82.74 E-value=2.8 Score=39.13 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 234 FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 234 ~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
+..+..++++.....+..-++..||.++..+.+ ...+..+-.+ -.+. +..||||.-
T Consensus 34 ~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~---g~D~--~~lGNHefd 94 (281)
T cd07409 34 FARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL---GYDA--MTLGNHEFD 94 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc---CCCE--EEecccccc
Confidence 445555666554322222344479999876643 3344444333 2343 335999953
No 461
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=82.33 E-value=1 Score=42.49 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
....+++....+.+.+..|+..-..+++.++....+++.++..++.+.++++|++.++.+....|++......+..+-..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 34556778888889999999988888888899999999999999999999999999999999999988776665555444
Q ss_pred cCC
Q 014212 95 MGK 97 (429)
Q Consensus 95 ~g~ 97 (429)
..+
T Consensus 356 ~~~ 358 (372)
T KOG0546|consen 356 KKQ 358 (372)
T ss_pred HHH
Confidence 433
No 462
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.09 E-value=7.7 Score=35.38 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~a 108 (429)
......+|..|+..|++++|++.|+.+...... .......+..|+..+|+.++.+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 566778999999999999999999999765332 2356777889999999998887765544
No 463
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=81.89 E-value=9 Score=38.45 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=65.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 38 SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 38 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
++-++.+|.|..+|+.+-.-+..+ -++++...|++.+...|..+.+|-..........+|+.-...|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667889999999999987765544 8999999999999999999999999999999999999988889888864
No 464
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.09 E-value=2.2 Score=43.80 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHhhCHHHHHHHHHHHHHh----
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY----------ANRAFAHTKLEEYGSAIQDASKAIEI---- 77 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~lg~~~~~~g~~~~A~~~~~~al~~---- 77 (429)
..++.|..+|......-+++.|...|-++-.. |. ...- ...|.+-.--|+|++|.+.|-.+=+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAi 767 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAI 767 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhH
Confidence 45678888888888888888887777665211 00 0011 12233333345666665555332111
Q ss_pred ---------------------CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------
Q 014212 78 ---------------------DPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL---------------------- 111 (429)
Q Consensus 78 ---------------------~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------------------- 111 (429)
+.+ .-.++.++|..+..+.++++|.++|.++-..
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~ 847 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLART 847 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh
Confidence 111 1357888888888888888888887765332
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 112 SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 112 ~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
-|++.+.+..++......|. .++|...+-
T Consensus 848 Lpe~s~llp~~a~mf~svGM--C~qAV~a~L 876 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGM--CDQAVEAYL 876 (1189)
T ss_pred cCcccchHHHHHHHHHhhch--HHHHHHHHH
Confidence 26677777777777766665 556665544
No 465
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.71 E-value=24 Score=35.30 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCHHHHHHH-------HHHHHHh-----------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDL-------YSQAIEL-----------NSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~-------~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
....+..+.++|-.+.|+.. |+-|++. ..+++..|..+|...+.+|+++-|..+|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44555666666776766654 2223321 2234555666666666666666666666554
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.61 E-value=8.7 Score=37.59 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELN---------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
++..+.+++.-.|||..|++.++-. +++ +-....++..|-+|+.+++|.+|+..|...+..--.....+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3445667778899999999987653 222 224567899999999999999999999998754221111111
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Q 014212 87 RRGAAY-LAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 87 ~la~~~-~~~g~~~eA~~~~~~al~~~p~ 114 (429)
....-+ .-.+..++....+--++.+.|.
T Consensus 203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 111111 1124456666667777777785
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.58 E-value=36 Score=34.60 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHhhCHHHHHHHHHHH-----HHhCCCChHHHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYANRAFAH-TKLEEYGSAIQDASKA-----IEIDPRYPKGYYRR 88 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~-~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~l 88 (429)
+++..-..+.+.|-+..|.++.+-.+.++|. ++.+...+-..| .+..+|+--++.++.. +..-|+.+.. ..+
T Consensus 344 ~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS-~Al 422 (665)
T KOG2422|consen 344 ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS-LAL 422 (665)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH-HHH
Confidence 4445556667889999999999999999999 876655555555 4556777666666655 2333544322 345
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 014212 89 GAAYLAMGK---FKEALKDFQQVKKLSPN 114 (429)
Q Consensus 89 a~~~~~~g~---~~eA~~~~~~al~~~p~ 114 (429)
|..|..... -..|...+.+|+.+.|.
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 556665555 46799999999998875
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.58 E-value=17 Score=33.08 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhH
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKL 132 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~ 132 (429)
.....+|.-|...|++++|...|+.+....... ..++..+..|...+++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 456788999999999999999999997653321 34667777777777764
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.15 E-value=24 Score=36.95 Aligned_cols=208 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhhCHHHHHHHHHH-----------HHHhC
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQN------------AVYYANRAFAHTKLEEYGSAIQDASK-----------AIEID 78 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~-----------al~~~ 78 (429)
..|.+.|...+|......--.+..+. ...|-.-|.++.+..++++|+++|++ -+...
T Consensus 623 qlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp 702 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP 702 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc-ccccccccccccccc
Q 014212 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE-SERHSVADSIDYQSI 157 (429)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~l 157 (429)
..-...--..|.-+...|+++.|+.+| .++.-...-+...++..++.+|+...+ ......+..+|....
T Consensus 703 ~evv~lee~wg~hl~~~~q~daainhf----------iea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~ia 772 (1636)
T KOG3616|consen 703 EEVVKLEEAWGDHLEQIGQLDAAINHF----------IEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIA 772 (1636)
T ss_pred HHHhhHHHHHhHHHHHHHhHHHHHHHH----------HHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHH
Q ss_pred ccCCCCCCCcccCCC-CCHHHHHHHHHHhhcccC-----------CcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceE
Q 014212 158 EVEPQYSGARIEGDV-ITLDFVKKMMDDFKNQKC-----------LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFT 225 (429)
Q Consensus 158 ~~~~~~~~~~~~~~~-l~~~~l~~li~~l~~~~~-----------l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~ 225 (429)
.-...-..-...... ..-+..+..+..+.+..+ ..++....+...-.+-+.++....+...- ++
T Consensus 773 dhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql----yi 848 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL----YI 848 (1636)
T ss_pred HHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe----eE
Q ss_pred EEc---------cCCCCHHHHHHHHHH
Q 014212 226 VCG---------DVHGQFYDLLNIFEL 243 (429)
Q Consensus 226 v~G---------DihG~~~~l~~~l~~ 243 (429)
-+| |-||..+++.++.++
T Consensus 849 ti~~p~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 849 TIGEPDKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred EccCchHHHHHHHhhCcchHHHHHHHH
No 470
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.06 E-value=6.8 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 97 KFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 97 ~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
+.+.|...|++++...|.++..|....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445566666666666665555554443
No 471
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.89 E-value=18 Score=36.35 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC----ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEID---PR----YPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~ 116 (429)
-++.+|.++..+|+...|..+|..+++.. .. .|.++|.+|..|.+++. ..+|.+++.+|-....++.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 35678999999999999999999998432 11 46799999999999999 9999999999999876654
No 472
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.77 E-value=17 Score=35.27 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--------CChH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--------RYPK 83 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~ 83 (429)
.++..+|.-|..-|+++.|++.|.++-.-.... ...|.++-.+-..+++|.....+-.+|.+-.. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 445555666666666666666666643332221 23344444444555555555554444443310 0122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~a 108 (429)
..+.-|.+...+++|+.|..+|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444445555555555555555433
No 473
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.71 E-value=13 Score=26.81 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.+|++.+.+++...|+++........+...+.+
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 345555555666678887766656555555444
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=78.49 E-value=50 Score=32.15 Aligned_cols=66 Identities=15% Similarity=-0.090 Sum_probs=48.9
Q ss_pred cccHhHHHHHHH--HHHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH--HHhhCHHHHHHHHHH
Q 014212 8 NSSVSRAEELKA--LANEAFRAKKYSQAIDLYSQAIELNSQ-----NAVYYANRAFAH--TKLEEYGSAIQDASK 73 (429)
Q Consensus 8 ~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~--~~~g~~~~A~~~~~~ 73 (429)
.++|-.+..... .+..+++.++|..|...|.++++..+. ....+..++.+| +..-++++|.+.+++
T Consensus 122 ~~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 122 PSDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 456777766655 555899999999999999999987542 234455555554 567789999999984
No 475
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=78.40 E-value=4.7 Score=37.14 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=45.9
Q ss_pred ceEEEccCCCC--HHHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 223 HFTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 223 ~~~v~GDihG~--~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
++..+||+-|. ...+...|.........+-.|..||...-| .-+-++...|+++.+ .++- .|||+.
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT-~GNH~~ 70 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGV----NYIT-MGNHTW 70 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEE-ccchhc
Confidence 48899999998 455566666554333345566689999766 467888888887754 3444 399984
No 476
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.20 E-value=13 Score=30.64 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
-.+.....+......|++.-|.+....++..+|++.++...++.++.+++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777777777777777777765
No 477
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.18 E-value=5 Score=25.66 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
+.+|.+|..+|+.+.|.+.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888884
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.81 E-value=3.7 Score=40.10 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 51 YANRAFAHTKLEEYGSAIQDASKAI--------EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
...+..++..+|||..|++.++..- ...+.+...+|..|-+|.-+++|.+|+..|...+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888999999999876431 112345667899999999999999999999988764
No 479
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=77.70 E-value=3.2 Score=46.99 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=39.3
Q ss_pred CceEEEccCCCCH---HHHHHHHHHcCCCCCCCCeEE-ccccccCCCCcH-----HHHHHHHHhhhhCCCeEEEecCCcc
Q 014212 222 KHFTVCGDVHGQF---YDLLNIFELNGLPSEENPYLF-NGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRGNHE 292 (429)
Q Consensus 222 ~~~~v~GDihG~~---~~l~~~l~~~~~~~~~~~~~~-lGD~vdrG~~s~-----e~~~~l~~lk~~~p~~~~~lrGNhe 292 (429)
..+..+.|+||.+ ..+..++++..... .+.+++ .||+++..+.+. .++..+-.+. .+ ++..||||
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg---~d--~~~~GNHE 734 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEEN-PNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG---YD--ASTFGNHE 734 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhC-CCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC---CC--EEEecccc
Confidence 3578889999875 44444555443222 233434 799999776542 4555554442 22 44679999
Q ss_pred c
Q 014212 293 S 293 (429)
Q Consensus 293 ~ 293 (429)
.
T Consensus 735 f 735 (1163)
T PRK09419 735 F 735 (1163)
T ss_pred c
Confidence 5
No 480
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=76.42 E-value=11 Score=34.43 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=59.3
Q ss_pred CeEEEecCCcccccchhhc-cchhhhhcccchHHHHHHHHHhccC--cccceecC-eEEEEecCccCCCCCCcccccccc
Q 014212 282 SAIYLSRGNHESKSMNKIY-GFEGEVRSKLSETFVELFAEVFCCL--PLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTID 357 (429)
Q Consensus 282 ~~~~~lrGNhe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~~~~~-~~~~vH~gi~~~~~~~~~~i~~~~ 357 (429)
=.|.+++||||-....... -++..+..+-. .+ .-|... |....+++ +++..|| ++++||.+.-
T Consensus 95 i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~--~~----~~~~~vtNP~~~~i~g~~vLgtsG-------qni~Di~ky~ 161 (257)
T cd07387 95 VPVDLMPGEFDPANHSLPQQPLHRCLFPKSS--NY----STLNLVTNPYEFSIDGVRVLGTSG-------QNVDDILKYS 161 (257)
T ss_pred CeEEECCCCCCcccccCCCCCCCHHHhhccc--cc----CCcEEeCCCeEEEECCEEEEEECC-------CCHHHHHHhC
Confidence 4688999999976655432 23322211100 00 112222 55555665 6777776 3455555432
Q ss_pred CCCCC-----------CCCCcccccccCCCCC-CCCCCCCCCCCcEEEEEeeccccccCceeec--CCeEEEEcCCCCCC
Q 014212 358 RFCEP-----------PEEGLMCELLWSDPQP-LPGRGPSKRGVGLSFVVRSHEVKDEGYEIEH--DGKLITVFSAPNYC 423 (429)
Q Consensus 358 r~~~~-----------~~~~~~~~~lw~dp~~-~~~~~~~~~~~~~~~iir~h~~~~~g~~~~~--~~~~~t~fs~~~y~ 423 (429)
...++ .-.+..-|-||.=|-. ...+- -..-..+ ++-|||.. -|.+... +++-+.+.|.|.|.
T Consensus 162 ~~~~~l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfv-i~~~PhV--yf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs 237 (257)
T cd07387 162 SLESRLDILERTLKWRHIAPTAPDTLWCYPFTDRDPFI-LEECPHV--YFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFS 237 (257)
T ss_pred CCCCHHHHHHHHHHhcccCCCCCCccccccCCCCCcee-ecCCCCE--EEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcC
Confidence 11000 0112334456665532 12111 1111111 56788864 4444432 25667777778875
Q ss_pred C
Q 014212 424 D 424 (429)
Q Consensus 424 ~ 424 (429)
.
T Consensus 238 ~ 238 (257)
T cd07387 238 K 238 (257)
T ss_pred c
Confidence 4
No 481
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.54 E-value=24 Score=34.52 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhhCHH----------HHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQNAVYYANRAFAHTKLEEYG----------SAIQDASK 73 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~ 73 (429)
--++..|.+++....|++|+..+-.|-+. -.+.+..-..+-.||+.+.+.. .|...|.+
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 34678899999999999999887776542 2333444445677888776532 34444444
Q ss_pred HHHhC---------CCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 74 AIEID---------PRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 74 al~~~---------p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
+..-+ ++.+ ..+..-|.+.+.+|+-++|.++++.|...
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 33211 2233 24555699999999999999999988764
No 482
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=74.11 E-value=8.3 Score=35.34 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred ceEEEccCCCCH--HHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++..+||+-|.. ..+...+.........+-.|-.||...-| .-+.++...|..+.. +-+.+ ||||.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~---D~iTl--GNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGV---DVITM--GNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCC---CEEEe--cccccC
Confidence 378899999976 33455555543322334466679998766 467888888888754 33333 999743
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.68 E-value=61 Score=29.77 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=64.3
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHH-HHHHHHHHHHHh----
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYG-SAIQDASKAIEI---- 77 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~---- 77 (429)
++..+..+.++.=|..+++.+++..|.+...-.++. .+.+.....+++.+......-+ +-.+..++|++-
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~ 83 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFG 83 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccC
Confidence 445667788899999999999999988876655543 3445555577777776664322 233333344332
Q ss_pred --CCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014212 78 --DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (429)
Q Consensus 78 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 107 (429)
.-.+++.+..+|..+.+.|++.+|..+|-.
T Consensus 84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 124788999999999999999999988753
No 484
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.60 E-value=88 Score=32.00 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred cCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----C------------
Q 014212 28 KKYSQAIDLYSQAIEL------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----D------------ 78 (429)
Q Consensus 28 g~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~------------ 78 (429)
..|++|...|.-|.+. .|.....+..++.+...+|+.+-|....+++|-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4567777777777653 4667788899999999999999888877777631 1
Q ss_pred ----CCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 014212 79 ----PRYPK---GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAV 129 (429)
Q Consensus 79 ----p~~~~---~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 129 (429)
|.|-. +.+..-..+.+.|-+.-|.++++-.++++|. +|-+-..+-..+...
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 23322 2334445566779999999999999999998 887666555555433
No 485
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.50 E-value=7.7 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 18 KALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
+.+|..|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3556666666666666666666663
No 486
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=73.49 E-value=5.7 Score=37.47 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCCCeEEccccccCCCCcHH---HHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 249 EENPYLFNGDFVDRGSFSVE---VILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 249 ~~~~~~~lGD~vdrG~~s~e---~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
..+-+||.||.|+. ..... ++.-..+--+.+.=--.++.||||...
T Consensus 100 ~PDlVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 100 KPDLVVFTGDNIFG-HSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred CCCEEEEeCCcccc-cccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 45679999999995 43333 333333333333222345579998654
No 487
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=72.81 E-value=46 Score=30.88 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=73.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHhhCH----HHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFA---HTKLEEY----GSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
....++..++|++=-+.+.+..+...+ .....+..+.. .+.+... ....+.++.=++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456778899999988888888754332 11111111111 1122111 13455556667889999999888887
Q ss_pred HHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 91 AYLAMG----------------------KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 91 ~~~~~g----------------------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.+.... -.+.|..++.+|++++|....+...+-.+-..+|.
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 776552 13789999999999999999888887766655554
No 488
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.51 E-value=33 Score=37.45 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC-----------------
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----------------- 79 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------------- 79 (429)
....|..++..+.|+.|.-.|.. ..-|..++..+..+|+|+.|++..++|-....
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 45678888999999988887765 44677888889999999999999888754321
Q ss_pred --------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 80 --------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 80 --------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
-+++-+-.+-..|...|-|+|-+..++.++-+...+......++.+|...+
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 022334556677888899999999999999988777777777777775544
No 489
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.20 E-value=36 Score=34.99 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=69.9
Q ss_pred HHHHHHHHH---HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 16 ELKALANEA---FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 16 ~~~~~a~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+..+|..+ .+++..+.|....+.-+......+...+..+..+-..++.++|-.+|++.+..+|+ ..++..|.-+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (578)
T PRK15490 7 KLAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRL 84 (578)
T ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHH
Confidence 344444443 45566677777766666556666777788888899999999999999999999998 6888999999
Q ss_pred HHcCCHHHHHHHHH
Q 014212 93 LAMGKFKEALKDFQ 106 (429)
Q Consensus 93 ~~~g~~~eA~~~~~ 106 (429)
.+.|-..+|...++
T Consensus 85 ~~~~~~~~~~~~~~ 98 (578)
T PRK15490 85 YNTGLAKDAQLILK 98 (578)
T ss_pred HhhhhhhHHHHHHH
Confidence 99999888888877
No 490
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=72.00 E-value=33 Score=37.65 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH--
Q 014212 14 AEELKALANEAFRA-------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG-- 84 (429)
Q Consensus 14 ~~~~~~~a~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-- 84 (429)
-++.+..|..+..+ ..+++|+..|++. .-.|.-+-=|...|.+|..+|++++-++++.-|++..|..|..
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 34556666655532 2466777777664 3356667778899999999999999999999999999988764
Q ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 85 -----YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 85 -----~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
-+++-.+.+.. ...|....--++...|......
T Consensus 591 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 591 LRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccch
Confidence 33343333332 3467778888888889875543
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.57 E-value=11 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
.+..+...|..+-+.|+|++|+.+|..+++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455667777778888888888888887765
No 492
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.55 E-value=25 Score=28.60 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
.+..+|+-++-.+.++....-...+|+.++.+|.+|.+.|+..+|-+.+.+|.+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455666665555565555444457888888999999999999998888888875
No 493
>PF12854 PPR_1: PPR repeat
Probab=71.11 E-value=10 Score=22.43 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~ 107 (429)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
No 494
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.06 E-value=2.2e+02 Score=34.48 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 30 YSQAIDLYSQAIE---LN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 30 ~~~A~~~~~~al~---~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
..+-+-.+++++- .+ ..-...|...|.+....|+++.|..+.-+|.+.. -++++...|...-..|+...|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4444444555442 23 3347889999999999999999999999998876 6789999999999999999999
Q ss_pred HHHHHHHHhC-CCC-------HHH--HHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCC
Q 014212 103 KDFQQVKKLS-PND-------PDA--AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV 172 (429)
Q Consensus 103 ~~~~~al~~~-p~~-------~~~--~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 172 (429)
..+++.++.+ |+. |.. ....+.+....+. |.+...-.+ ...-...|..+.+..|.|...+.-.+
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~--~~~es~n~~---s~~ilk~Y~~~~ail~ewe~~hy~l~- 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITK--YLEESGNFE---SKDILKYYHDAKAILPEWEDKHYHLG- 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHH--HHHHhcchh---HHHHHHHHHHHHHHcccccCceeeHH-
Confidence 9999999765 331 111 1111112222322 222111122 22234455677888887777655432
Q ss_pred CCHHHHHHHHHHhhcccC
Q 014212 173 ITLDFVKKMMDDFKNQKC 190 (429)
Q Consensus 173 l~~~~l~~li~~l~~~~~ 190 (429)
...+++.+..+....
T Consensus 1797 ---~yy~kll~~~~~~~~ 1811 (2382)
T KOG0890|consen 1797 ---KYYDKLLEDYKSNKM 1811 (2382)
T ss_pred ---HHHHHHhhhhhcccc
Confidence 345555555554443
No 495
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=70.97 E-value=6.6 Score=37.20 Aligned_cols=73 Identities=25% Similarity=0.359 Sum_probs=44.2
Q ss_pred ceEEEccCCCCHHHHHHH---HHHcCCCCCCCCeEEcccccc-CCC---CcHHHHHHHHHh---------hhhCCCeEEE
Q 014212 223 HFTVCGDVHGQFYDLLNI---FELNGLPSEENPYLFNGDFVD-RGS---FSVEVILTLFAF---------KCMCPSAIYL 286 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~---l~~~~~~~~~~~~~~lGD~vd-rG~---~s~e~~~~l~~l---------k~~~p~~~~~ 286 (429)
++.|-|-.||.++.+-+- .++.|- ..-+-+++.||+=. |.. +|+.|=---..+ ....|=-.++
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~-tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGN-TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCC-CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 478889999999988753 344442 23456899999842 211 222221111111 2455766778
Q ss_pred ecCCcccccc
Q 014212 287 SRGNHESKSM 296 (429)
Q Consensus 287 lrGNhe~~~~ 296 (429)
|=||||.+..
T Consensus 81 IGGNHEAsny 90 (456)
T KOG2863|consen 81 IGGNHEASNY 90 (456)
T ss_pred ecCchHHHHH
Confidence 8999997754
No 496
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.79 E-value=12 Score=26.29 Aligned_cols=30 Identities=47% Similarity=0.565 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
.+..+...|..+-..|++++|+.+|.++++
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666777777778888888888777764
No 497
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.58 E-value=11 Score=36.96 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=52.0
Q ss_pred CceEEEccCCCCHHHHHHHHHHcCCCCC-CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCc
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELNGLPSE-ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH 291 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~-~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNh 291 (429)
.++.++||..|.++.+.+-.+....... =+-++++|++.+--..+.|++.+.-.- ...|--+|++-+|-
T Consensus 6 ~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 6 AKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred ceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 4699999999999999887766543322 345889999998767788888877554 34677788877766
No 498
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=70.49 E-value=24 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 014212 53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96 (429)
Q Consensus 53 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 96 (429)
..|..-+..||++.|.+...++-+..+..+-.+..-|.+-..+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34444555566666666666664443333333333344444443
No 499
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.04 E-value=80 Score=34.00 Aligned_cols=87 Identities=17% Similarity=0.007 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----CCh
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----RYP 82 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~ 82 (429)
..++..-..|.+...+|++++|++..+.++..-|.+ ..++...|.+.+-.|++.+|..+...+.++.. -.-
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH
Confidence 345566677889999999999999999999987764 45678899999999999999999999888732 222
Q ss_pred H--HHHHHHHHHHHcCCH
Q 014212 83 K--GYYRRGAAYLAMGKF 98 (429)
Q Consensus 83 ~--~~~~la~~~~~~g~~ 98 (429)
. +.+..+.++..+|+.
T Consensus 536 ~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 536 ALWSLLQQSEILEAQGQV 553 (894)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 2 344557888899943
No 500
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.65 E-value=72 Score=27.40 Aligned_cols=124 Identities=9% Similarity=0.019 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--C--hHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--Y--PKGYYRRGA 90 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~ 90 (429)
-+.-|..+.+.+..++|+..|...-+..-.. ..+....|.+..+.|+...|+..|..+-.-.|. - --+..+-|.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3455667778888999999998877655443 455677889999999999999999987654432 1 135666788
Q ss_pred HHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 91 AYLAMGKFKEALKDFQQVK-KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++...|.|++-..-.+..- .-+|--..+...|+....+.|+ +.+|...+.
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd--~a~A~~~F~ 191 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD--FAKAKSWFV 191 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc--hHHHHHHHH
Confidence 8899999977554443211 1223334556666666555555 666666655
Done!