Query 014212
Match_columns 429
No_of_seqs 455 out of 4452
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wao_1 Serine/threonine protei 100.0 5.2E-81 1.8E-85 626.8 34.5 419 10-429 2-436 (477)
2 3h63_A Serine/threonine-protei 100.0 1.7E-70 5.7E-75 508.5 23.4 267 163-429 1-283 (315)
3 3icf_A PPT, serine/threonine-p 100.0 1.1E-69 3.6E-74 506.6 20.1 267 161-429 2-287 (335)
4 3e7a_A PP-1A, serine/threonine 100.0 4.2E-67 1.5E-71 482.2 22.6 246 178-429 8-278 (299)
5 3ll8_A Serine/threonine-protei 100.0 3.7E-66 1.3E-70 483.8 23.1 246 178-429 30-305 (357)
6 1aui_A Calcineurin, serine/thr 100.0 2.6E-62 9E-67 474.1 22.2 247 177-429 42-318 (521)
7 2ie4_C PP2A-alpha;, serine/thr 100.0 7.5E-62 2.6E-66 453.0 22.4 251 173-429 5-272 (309)
8 1fjm_A Protein serine/threonin 100.0 5.8E-61 2E-65 449.3 22.8 246 178-429 9-279 (330)
9 2z72_A Protein-tyrosine-phosph 100.0 1.3E-36 4.5E-41 289.8 2.7 212 207-425 60-312 (342)
10 2dfj_A Diadenosinetetraphospha 100.0 1.6E-31 5.6E-36 246.9 6.9 179 223-409 2-211 (280)
11 2qjc_A Diadenosine tetraphosph 99.9 4.9E-24 1.7E-28 195.7 5.4 169 223-402 20-208 (262)
12 4gco_A Protein STI-1; structur 99.9 1E-20 3.5E-25 154.1 18.4 122 5-126 4-125 (126)
13 1g5b_A Serine/threonine protei 99.8 1E-20 3.4E-25 169.7 10.9 168 214-402 5-190 (221)
14 4gyw_A UDP-N-acetylglucosamine 99.8 1.5E-18 5.2E-23 180.9 20.9 145 8-166 3-147 (723)
15 3gyz_A Chaperone protein IPGC; 99.8 6.4E-18 2.2E-22 141.8 17.3 112 5-116 27-138 (151)
16 4ga2_A E3 SUMO-protein ligase 99.8 1.7E-18 5.7E-23 145.4 13.7 124 7-130 24-148 (150)
17 2pl2_A Hypothetical conserved 99.8 9.3E-18 3.2E-22 149.8 16.0 142 9-165 34-186 (217)
18 3upv_A Heat shock protein STI1 99.8 1.7E-17 5.9E-22 134.3 16.2 118 11-128 1-124 (126)
19 3urz_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 150.9 13.3 130 13-142 3-148 (208)
20 2pl2_A Hypothetical conserved 99.8 9.7E-19 3.3E-23 156.2 8.9 130 11-142 2-142 (217)
21 3vtx_A MAMA; tetratricopeptide 99.8 5E-18 1.7E-22 146.8 12.5 140 12-165 3-142 (184)
22 2vgx_A Chaperone SYCD; alterna 99.8 4.5E-17 1.5E-21 136.3 17.4 124 7-130 14-137 (148)
23 2xcb_A PCRH, regulatory protei 99.7 6.4E-17 2.2E-21 134.1 18.0 127 5-131 9-135 (142)
24 3sz7_A HSC70 cochaperone (SGT) 99.7 8.6E-17 3E-21 136.6 17.8 122 7-128 4-125 (164)
25 4gcn_A Protein STI-1; structur 99.7 6.8E-17 2.3E-21 131.4 15.7 114 9-123 3-123 (127)
26 2h6f_A Protein farnesyltransfe 99.7 8.1E-17 2.8E-21 156.0 19.0 149 6-168 89-238 (382)
27 4ga2_A E3 SUMO-protein ligase 99.7 1.3E-18 4.4E-23 146.0 5.1 133 19-164 2-134 (150)
28 3vtx_A MAMA; tetratricopeptide 99.7 8.5E-17 2.9E-21 139.0 15.6 142 8-163 33-174 (184)
29 3rkv_A Putative peptidylprolyl 99.7 1E-16 3.5E-21 135.9 15.7 124 8-131 5-147 (162)
30 4i17_A Hypothetical protein; T 99.7 7E-17 2.4E-21 144.6 15.5 136 13-162 6-149 (228)
31 2hr2_A Hypothetical protein; a 99.7 2.6E-17 9E-22 137.1 11.4 120 11-130 8-150 (159)
32 4gyw_A UDP-N-acetylglucosamine 99.7 2.7E-17 9.4E-22 171.5 12.6 133 8-142 37-169 (723)
33 2vyi_A SGTA protein; chaperone 99.7 1.3E-15 4.3E-20 122.7 18.9 126 6-131 4-129 (131)
34 2lni_A Stress-induced-phosphop 99.7 4.5E-16 1.5E-20 126.1 15.8 126 5-130 7-132 (133)
35 1a17_A Serine/threonine protei 99.7 1.1E-15 3.9E-20 128.9 18.3 135 8-142 7-141 (166)
36 1p5q_A FKBP52, FK506-binding p 99.7 1.1E-15 3.9E-20 145.6 19.4 125 8-132 141-280 (336)
37 2h6f_A Protein farnesyltransfe 99.7 1.1E-16 3.8E-21 155.0 12.1 151 8-166 125-276 (382)
38 3gyz_A Chaperone protein IPGC; 99.7 1.9E-17 6.6E-22 138.8 5.4 120 29-162 17-136 (151)
39 3q49_B STIP1 homology and U bo 99.7 1.6E-15 5.6E-20 124.0 15.6 122 9-130 4-130 (137)
40 4i17_A Hypothetical protein; T 99.7 5.4E-16 1.8E-20 138.8 13.6 152 12-163 40-213 (228)
41 2fbn_A 70 kDa peptidylprolyl i 99.7 3.2E-15 1.1E-19 130.9 17.4 124 8-131 32-171 (198)
42 1elw_A TPR1-domain of HOP; HOP 99.7 6.2E-15 2.1E-19 116.4 17.3 115 12-126 2-116 (118)
43 4gco_A Protein STI-1; structur 99.7 2.6E-16 8.8E-21 127.8 9.3 114 39-166 4-117 (126)
44 2pzi_A Probable serine/threoni 99.7 3.1E-16 1.1E-20 163.7 12.2 146 8-168 427-572 (681)
45 1hxi_A PEX5, peroxisome target 99.7 9.4E-16 3.2E-20 123.5 12.4 104 14-117 17-120 (121)
46 4abn_A Tetratricopeptide repea 99.6 5E-16 1.7E-20 155.2 12.3 131 9-142 97-245 (474)
47 2dba_A Smooth muscle cell asso 99.6 7.1E-15 2.4E-19 121.4 16.3 120 7-126 21-143 (148)
48 1na0_A Designed protein CTPR3; 99.6 1.6E-14 5.6E-19 115.0 17.6 117 13-129 8-124 (125)
49 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4.3E-15 1.5E-19 147.7 17.0 125 8-132 262-401 (457)
50 3as5_A MAMA; tetratricopeptide 99.6 7.3E-15 2.5E-19 125.6 15.5 133 8-142 36-168 (186)
51 2fo7_A Synthetic consensus TPR 99.6 1.2E-14 4E-19 117.3 14.9 126 15-142 2-127 (136)
52 1elr_A TPR2A-domain of HOP; HO 99.6 2.2E-14 7.7E-19 115.4 16.3 120 11-131 1-127 (131)
53 2vsy_A XCC0866; transferase, g 99.6 7.9E-15 2.7E-19 149.8 15.8 147 6-166 15-164 (568)
54 4abn_A Tetratricopeptide repea 99.6 6.8E-16 2.3E-20 154.2 7.3 132 27-161 81-252 (474)
55 3qky_A Outer membrane assembly 99.6 4.9E-15 1.7E-19 135.5 12.4 156 8-163 9-181 (261)
56 3as5_A MAMA; tetratricopeptide 99.6 4.4E-14 1.5E-18 120.7 17.6 174 10-210 4-177 (186)
57 2q7f_A YRRB protein; TPR, prot 99.6 9.3E-14 3.2E-18 124.6 20.5 132 9-142 52-183 (243)
58 2xev_A YBGF; tetratricopeptide 99.6 2.5E-14 8.6E-19 115.5 15.1 113 15-127 3-121 (129)
59 1ihg_A Cyclophilin 40; ppiase 99.6 1.7E-14 5.8E-19 139.3 16.2 122 10-131 219-356 (370)
60 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.4E-14 4.8E-19 127.8 14.4 136 11-163 3-154 (213)
61 1zu2_A Mitochondrial import re 99.6 8.6E-15 2.9E-19 121.7 12.1 102 25-126 13-135 (158)
62 2vgx_A Chaperone SYCD; alterna 99.6 1.1E-15 3.6E-20 127.8 6.6 119 31-163 4-122 (148)
63 2vq2_A PILW, putative fimbrial 99.6 2.7E-14 9.2E-19 126.3 15.1 133 8-142 2-137 (225)
64 4eqf_A PEX5-related protein; a 99.6 6.2E-14 2.1E-18 134.3 18.8 129 12-142 63-237 (365)
65 1w3b_A UDP-N-acetylglucosamine 99.6 7.7E-15 2.6E-19 142.0 12.5 121 11-131 132-252 (388)
66 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-14 7.4E-19 128.8 14.1 143 10-166 87-229 (243)
67 2c2l_A CHIP, carboxy terminus 99.6 3.3E-14 1.1E-18 131.9 15.8 105 11-115 1-105 (281)
68 1w3b_A UDP-N-acetylglucosamine 99.6 1.6E-14 5.5E-19 139.7 14.0 140 10-163 63-202 (388)
69 3qky_A Outer membrane assembly 99.6 2.6E-14 8.8E-19 130.7 14.6 141 11-163 49-228 (261)
70 3urz_A Uncharacterized protein 99.6 7.3E-14 2.5E-18 123.5 16.8 132 8-142 32-181 (208)
71 2if4_A ATFKBP42; FKBP-like, al 99.6 2.4E-15 8.3E-20 143.5 7.7 143 8-163 173-332 (338)
72 3uq3_A Heat shock protein STI1 99.6 3.4E-14 1.1E-18 128.5 14.3 128 13-142 78-231 (258)
73 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.8E-18 126.5 17.7 131 9-142 38-168 (275)
74 1fch_A Peroxisomal targeting s 99.6 1.3E-13 4.6E-18 131.7 18.4 131 10-142 94-275 (368)
75 2y4t_A DNAJ homolog subfamily 99.5 8.4E-14 2.9E-18 137.0 17.1 157 5-163 17-176 (450)
76 3hym_B Cell division cycle pro 99.5 1E-13 3.5E-18 130.1 16.9 131 10-142 86-217 (330)
77 2vq2_A PILW, putative fimbrial 99.5 6.6E-14 2.2E-18 123.8 14.7 132 9-142 37-171 (225)
78 3u4t_A TPR repeat-containing p 99.5 2.7E-14 9.3E-19 130.7 12.4 135 14-163 3-141 (272)
79 2ho1_A Type 4 fimbrial biogene 99.5 4.3E-14 1.5E-18 127.9 13.6 134 7-142 29-165 (252)
80 4eqf_A PEX5-related protein; a 99.5 3.7E-14 1.3E-18 135.9 13.5 155 10-166 95-317 (365)
81 2kck_A TPR repeat; tetratricop 99.5 1.7E-14 5.7E-19 112.8 9.1 107 10-116 2-111 (112)
82 2ho1_A Type 4 fimbrial biogene 99.5 7.4E-14 2.5E-18 126.3 14.7 131 10-142 67-199 (252)
83 2e2e_A Formate-dependent nitri 99.5 1.2E-13 4E-18 118.4 15.2 118 9-126 39-159 (177)
84 3hym_B Cell division cycle pro 99.5 8.1E-14 2.8E-18 130.8 15.2 138 12-163 157-303 (330)
85 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.8E-14 1.3E-18 126.8 12.3 151 13-163 3-180 (225)
86 2pzi_A Probable serine/threoni 99.5 1.3E-14 4.5E-19 151.3 10.6 176 9-202 389-574 (681)
87 1qqe_A Vesicular transport pro 99.5 8.9E-14 3.1E-18 129.7 14.5 184 10-208 73-285 (292)
88 3ieg_A DNAJ homolog subfamily 99.5 6.3E-14 2.1E-18 132.9 13.6 149 13-163 2-153 (359)
89 2r5s_A Uncharacterized protein 99.5 2.8E-14 9.7E-19 122.5 9.8 140 10-164 2-142 (176)
90 2xcb_A PCRH, regulatory protei 99.5 9.9E-15 3.4E-19 120.7 6.6 115 35-163 5-119 (142)
91 2e2e_A Formate-dependent nitri 99.5 2E-14 7E-19 123.2 8.6 128 22-163 18-148 (177)
92 3qou_A Protein YBBN; thioredox 99.5 2.5E-14 8.5E-19 133.2 9.8 139 11-163 114-252 (287)
93 3k9i_A BH0479 protein; putativ 99.5 3E-14 1E-18 113.6 8.6 98 26-123 2-102 (117)
94 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.9E-13 6.4E-18 122.3 14.6 131 10-142 37-208 (225)
95 1fch_A Peroxisomal targeting s 99.5 1.6E-13 5.6E-18 131.1 14.9 128 13-142 216-354 (368)
96 3cv0_A Peroxisome targeting si 99.5 2.1E-13 7.1E-18 127.8 15.2 131 10-142 168-310 (327)
97 3mkr_A Coatomer subunit epsilo 99.5 1.7E-13 5.8E-18 127.8 13.7 140 11-164 127-269 (291)
98 3uq3_A Heat shock protein STI1 99.5 5.5E-13 1.9E-17 120.4 15.9 117 9-125 134-256 (258)
99 3rqz_A Metallophosphoesterase; 99.5 2.8E-14 9.6E-19 129.7 6.9 113 222-343 4-121 (246)
100 3u4t_A TPR repeat-containing p 99.5 1.9E-13 6.6E-18 124.9 12.4 118 14-131 74-191 (272)
101 3ieg_A DNAJ homolog subfamily 99.5 3.9E-13 1.3E-17 127.4 14.4 132 9-142 32-178 (359)
102 2r5s_A Uncharacterized protein 99.5 1.8E-13 6E-18 117.5 10.1 134 6-142 32-168 (176)
103 1hxi_A PEX5, peroxisome target 99.5 5.7E-13 1.9E-17 107.0 11.6 100 50-163 19-118 (121)
104 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.1E-12 7.3E-17 113.7 16.0 105 13-117 36-156 (213)
105 2y4t_A DNAJ homolog subfamily 99.4 1.4E-12 4.7E-17 128.3 15.6 140 10-163 207-362 (450)
106 3upv_A Heat shock protein STI1 99.4 4.6E-13 1.6E-17 107.9 9.8 104 45-162 1-104 (126)
107 3fp2_A TPR repeat-containing p 99.4 1.2E-12 4.2E-17 131.6 15.0 124 14-140 243-366 (537)
108 3qou_A Protein YBBN; thioredox 99.4 3.9E-13 1.3E-17 125.1 10.4 132 8-141 145-278 (287)
109 4gcn_A Protein STI-1; structur 99.4 5E-13 1.7E-17 108.3 9.1 94 47-142 7-107 (127)
110 2xpi_A Anaphase-promoting comp 99.4 4.5E-13 1.5E-17 136.9 10.7 130 11-142 302-431 (597)
111 2hr2_A Hypothetical protein; a 99.4 4.4E-13 1.5E-17 111.6 8.4 107 48-168 11-140 (159)
112 2xpi_A Anaphase-promoting comp 99.4 1.9E-12 6.3E-17 132.3 14.9 138 13-164 440-584 (597)
113 2fo7_A Synthetic consensus TPR 99.4 6.1E-12 2.1E-16 101.0 15.0 106 10-115 31-136 (136)
114 1nnw_A Hypothetical protein; s 99.4 3.2E-13 1.1E-17 123.2 7.9 118 223-342 3-141 (252)
115 3edt_B KLC 2, kinesin light ch 99.4 1E-12 3.5E-17 120.1 11.3 132 9-142 38-193 (283)
116 3mkr_A Coatomer subunit epsilo 99.4 1.8E-12 6.1E-17 120.8 13.0 138 10-166 97-236 (291)
117 3qfm_A SAPH, putative uncharac 99.4 1.5E-13 5.2E-18 126.3 5.6 114 223-342 13-139 (270)
118 2ond_A Cleavage stimulation fa 99.4 5.1E-12 1.7E-16 118.5 16.1 131 10-142 95-227 (308)
119 3sz7_A HSC70 cochaperone (SGT) 99.4 1.1E-12 3.9E-17 110.9 10.3 109 44-166 7-115 (164)
120 1xnf_A Lipoprotein NLPI; TPR, 99.4 8.1E-13 2.8E-17 120.7 10.0 127 23-163 14-144 (275)
121 2vsy_A XCC0866; transferase, g 99.4 8.3E-13 2.9E-17 134.8 11.0 124 27-164 2-125 (568)
122 3cv0_A Peroxisome targeting si 99.4 7.5E-13 2.6E-17 123.9 9.4 127 23-163 147-273 (327)
123 3fp2_A TPR repeat-containing p 99.4 1E-11 3.4E-16 124.9 17.6 130 10-142 273-402 (537)
124 2kat_A Uncharacterized protein 99.4 9E-12 3.1E-16 98.6 13.6 101 31-131 2-104 (115)
125 4g1t_A Interferon-induced prot 99.4 1E-11 3.5E-16 123.0 17.2 144 10-164 47-209 (472)
126 2l6j_A TPR repeat-containing p 99.4 4E-13 1.4E-17 105.1 5.5 91 14-104 4-100 (111)
127 2ond_A Cleavage stimulation fa 99.4 7.4E-12 2.5E-16 117.5 14.6 141 9-163 45-202 (308)
128 1p5q_A FKBP52, FK506-binding p 99.4 1.6E-13 5.5E-18 130.7 3.2 126 26-165 125-265 (336)
129 3q49_B STIP1 homology and U bo 99.4 3.7E-12 1.3E-16 103.7 10.5 107 42-162 3-109 (137)
130 3edt_B KLC 2, kinesin light ch 99.4 2E-12 7E-17 118.1 9.9 133 8-142 79-276 (283)
131 1qqe_A Vesicular transport pro 99.3 2.8E-12 9.5E-17 119.5 10.6 137 14-164 37-192 (292)
132 2gw1_A Mitochondrial precursor 99.3 1.9E-12 6.6E-17 129.2 9.7 119 10-128 300-424 (514)
133 1na3_A Designed protein CTPR2; 99.3 2.1E-11 7E-16 91.6 12.7 86 11-96 6-91 (91)
134 1ouv_A Conserved hypothetical 99.3 1.7E-11 5.8E-16 112.5 14.7 125 10-142 2-138 (273)
135 2gw1_A Mitochondrial precursor 99.3 8.6E-12 2.9E-16 124.5 13.7 175 10-212 233-407 (514)
136 2fbn_A 70 kDa peptidylprolyl i 99.3 1.1E-12 3.8E-17 114.6 5.7 134 16-163 6-155 (198)
137 2kck_A TPR repeat; tetratricop 99.3 2.7E-12 9.2E-17 100.0 7.2 98 43-142 1-101 (112)
138 3nf1_A KLC 1, kinesin light ch 99.3 3.5E-12 1.2E-16 118.4 9.2 133 8-142 105-302 (311)
139 1dce_A Protein (RAB geranylger 99.3 1.2E-11 4.1E-16 125.7 13.8 158 8-167 57-229 (567)
140 2l6j_A TPR repeat-containing p 99.3 1.8E-11 6.3E-16 95.5 10.3 93 47-141 3-101 (111)
141 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 6.5E-13 2.2E-17 131.9 2.2 127 27-167 247-388 (457)
142 3ulq_A Response regulator aspa 99.3 1.3E-11 4.3E-16 119.3 11.0 133 8-142 137-288 (383)
143 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.1E-16 118.9 12.1 122 10-131 44-181 (411)
144 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-11 4.9E-16 114.3 10.6 132 9-142 64-219 (311)
145 2kc7_A BFR218_protein; tetratr 99.3 1.1E-11 3.7E-16 95.1 8.0 92 17-116 3-95 (99)
146 3ro3_A PINS homolog, G-protein 99.3 2.1E-11 7E-16 101.3 10.3 132 9-142 4-153 (164)
147 3rkv_A Putative peptidylprolyl 99.3 1E-11 3.4E-16 104.8 8.4 102 48-163 11-130 (162)
148 1na3_A Designed protein CTPR2; 99.3 5.5E-11 1.9E-15 89.2 11.7 84 46-129 7-90 (91)
149 2ifu_A Gamma-SNAP; membrane fu 99.3 9.3E-12 3.2E-16 116.8 8.8 139 11-165 73-229 (307)
150 1a17_A Serine/threonine protei 99.3 6.8E-11 2.3E-15 99.1 13.3 103 9-111 42-146 (166)
151 4g1t_A Interferon-induced prot 99.3 3.6E-11 1.2E-15 119.1 13.3 109 9-117 242-369 (472)
152 2lni_A Stress-induced-phosphop 99.2 2E-11 6.8E-16 98.3 8.5 106 44-163 12-117 (133)
153 3ma5_A Tetratricopeptide repea 99.2 1.1E-10 3.7E-15 90.1 11.9 84 43-126 2-87 (100)
154 1elw_A TPR1-domain of HOP; HOP 99.2 6.8E-11 2.3E-15 92.7 11.0 94 47-142 3-96 (118)
155 2qfc_A PLCR protein; TPR, HTH, 99.2 6.2E-10 2.1E-14 103.4 19.0 131 10-142 71-220 (293)
156 3dra_A Protein farnesyltransfe 99.2 9.3E-11 3.2E-15 109.4 13.2 122 9-130 62-194 (306)
157 3dss_A Geranylgeranyl transfer 99.2 2.6E-10 9E-15 107.1 16.3 161 7-167 57-230 (331)
158 2dba_A Smooth muscle cell asso 99.2 6.8E-11 2.3E-15 97.1 11.0 107 43-163 23-132 (148)
159 3ulq_A Response regulator aspa 99.2 2.3E-11 7.8E-16 117.5 8.8 125 16-142 105-248 (383)
160 3dss_A Geranylgeranyl transfer 99.2 1.7E-10 5.8E-15 108.4 14.1 121 8-128 102-239 (331)
161 2vyi_A SGTA protein; chaperone 99.2 5.4E-11 1.8E-15 95.1 9.3 108 42-163 6-113 (131)
162 1ouv_A Conserved hypothetical 99.2 2.5E-10 8.4E-15 104.6 14.8 124 11-142 35-174 (273)
163 1zu2_A Mitochondrial import re 99.2 3.3E-11 1.1E-15 100.1 7.7 93 59-163 13-124 (158)
164 2qfc_A PLCR protein; TPR, HTH, 99.2 1.3E-10 4.4E-15 108.0 12.8 129 12-142 113-261 (293)
165 3rjv_A Putative SEL1 repeat pr 99.2 1.6E-11 5.4E-16 108.7 6.2 124 12-142 16-153 (212)
166 3q15_A PSP28, response regulat 99.2 4.4E-11 1.5E-15 115.4 9.8 133 8-142 135-285 (378)
167 2xev_A YBGF; tetratricopeptide 99.2 6.9E-11 2.3E-15 95.0 9.4 101 49-163 3-109 (129)
168 1dce_A Protein (RAB geranylger 99.2 8.4E-10 2.9E-14 112.1 19.4 145 10-168 21-182 (567)
169 1na0_A Designed protein CTPR3; 99.2 1.7E-10 5.9E-15 91.2 11.5 98 43-142 3-101 (125)
170 3u3w_A Transcriptional activat 99.2 3.6E-11 1.2E-15 111.8 7.7 128 14-142 115-261 (293)
171 3gw4_A Uncharacterized protein 99.2 6.6E-11 2.2E-15 102.9 8.9 129 12-142 24-171 (203)
172 3k9i_A BH0479 protein; putativ 99.2 2.2E-10 7.4E-15 90.9 10.8 80 10-89 23-102 (117)
173 2c2l_A CHIP, carboxy terminus 99.2 6.8E-11 2.3E-15 109.5 8.9 105 45-163 1-105 (281)
174 1wao_1 Serine/threonine protei 99.1 3.3E-11 1.1E-15 120.2 6.9 109 9-117 35-156 (477)
175 3sf4_A G-protein-signaling mod 99.1 1E-10 3.4E-15 112.9 10.0 132 9-142 182-331 (406)
176 3q7a_A Farnesyltransferase alp 99.1 3E-09 1E-13 100.4 18.8 152 10-167 50-204 (349)
177 3ma5_A Tetratricopeptide repea 99.1 1.7E-10 5.7E-15 89.0 8.6 86 9-94 2-89 (100)
178 2ooe_A Cleavage stimulation fa 99.1 4.1E-10 1.4E-14 113.7 13.8 178 9-209 316-495 (530)
179 3dra_A Protein farnesyltransfe 99.1 6.1E-10 2.1E-14 103.9 13.9 124 8-131 97-235 (306)
180 2ifu_A Gamma-SNAP; membrane fu 99.1 8.7E-11 3E-15 110.1 8.0 129 11-142 33-179 (307)
181 3ro2_A PINS homolog, G-protein 99.1 1E-10 3.6E-15 109.1 8.3 131 10-142 179-327 (338)
182 1elr_A TPR2A-domain of HOP; HO 99.1 1.4E-10 4.6E-15 92.8 7.8 95 46-142 2-103 (131)
183 3sf4_A G-protein-signaling mod 99.1 1.6E-10 5.6E-15 111.3 9.5 130 11-142 124-291 (406)
184 4a1s_A PINS, partner of inscut 99.1 6.3E-11 2.2E-15 115.0 6.6 131 10-142 219-367 (411)
185 3q7a_A Farnesyltransferase alp 99.1 2.7E-10 9.3E-15 107.5 10.6 123 8-130 82-215 (349)
186 3u3w_A Transcriptional activat 99.1 1.1E-09 3.9E-14 101.6 14.4 183 10-212 71-272 (293)
187 3ro2_A PINS homolog, G-protein 99.1 7.8E-10 2.7E-14 103.1 12.9 120 12-131 3-138 (338)
188 4f3v_A ESX-1 secretion system 99.1 1.5E-10 5E-15 105.9 6.7 125 15-142 103-232 (282)
189 4f3v_A ESX-1 secretion system 99.1 1.4E-09 4.6E-14 99.5 12.7 115 7-123 129-248 (282)
190 2if4_A ATFKBP42; FKBP-like, al 99.0 1.6E-10 5.5E-15 109.9 6.5 103 15-117 231-334 (338)
191 3rjv_A Putative SEL1 repeat pr 99.0 9E-10 3.1E-14 97.3 10.5 127 12-142 48-192 (212)
192 1ihg_A Cyclophilin 40; ppiase 99.0 1.4E-09 4.9E-14 104.7 12.4 96 9-104 268-363 (370)
193 3q15_A PSP28, response regulat 99.0 4.2E-10 1.4E-14 108.5 8.3 105 10-114 178-293 (378)
194 2kc7_A BFR218_protein; tetratr 99.0 3.5E-09 1.2E-13 80.8 11.1 70 52-121 4-74 (99)
195 2ooe_A Cleavage stimulation fa 99.0 1.2E-09 4.2E-14 110.2 10.7 140 10-163 268-424 (530)
196 1pc2_A Mitochondria fission pr 99.0 6.9E-09 2.4E-13 85.1 12.9 102 29-130 13-119 (152)
197 2kat_A Uncharacterized protein 99.0 2.8E-09 9.6E-14 83.9 9.9 89 8-96 13-103 (115)
198 3n71_A Histone lysine methyltr 99.0 2.4E-09 8.1E-14 106.5 11.6 125 16-142 311-459 (490)
199 3ro3_A PINS homolog, G-protein 99.0 4.3E-09 1.5E-13 87.0 11.4 104 11-114 46-161 (164)
200 3gw4_A Uncharacterized protein 98.9 3.5E-09 1.2E-13 91.8 9.8 116 24-142 2-131 (203)
201 3bee_A Putative YFRE protein; 98.9 2.5E-08 8.7E-13 75.5 11.0 74 44-117 2-78 (93)
202 1hz4_A MALT regulatory protein 98.8 1.8E-08 6.1E-13 96.5 12.3 128 13-142 52-198 (373)
203 1hz4_A MALT regulatory protein 98.8 1.2E-08 4E-13 97.7 10.7 129 12-142 12-159 (373)
204 2v5f_A Prolyl 4-hydroxylase su 98.8 8.7E-08 3E-12 74.2 12.7 81 47-127 4-91 (104)
205 2xm6_A Protein corresponding t 98.8 2.4E-08 8.1E-13 99.7 11.9 109 14-128 291-411 (490)
206 1su1_A Hypothetical protein YF 98.8 8.3E-09 2.8E-13 90.8 7.5 68 223-295 27-102 (208)
207 3e4b_A ALGK; tetratricopeptide 98.8 2.7E-08 9.4E-13 98.3 11.5 122 15-142 177-311 (452)
208 3qww_A SET and MYND domain-con 98.8 4.4E-08 1.5E-12 95.8 12.4 101 21-121 305-426 (433)
209 2xm6_A Protein corresponding t 98.7 1E-07 3.5E-12 95.1 14.6 125 10-142 35-175 (490)
210 3qwp_A SET and MYND domain-con 98.7 5.6E-08 1.9E-12 95.1 11.9 108 14-121 287-415 (429)
211 1klx_A Cysteine rich protein B 98.7 1.5E-07 5E-12 77.0 12.5 88 20-111 31-126 (138)
212 2v5f_A Prolyl 4-hydroxylase su 98.7 1.1E-07 3.9E-12 73.5 11.2 76 14-89 5-87 (104)
213 1klx_A Cysteine rich protein B 98.7 9.5E-08 3.2E-12 78.1 10.2 106 27-142 8-121 (138)
214 3n71_A Histone lysine methyltr 98.7 6.4E-08 2.2E-12 96.2 10.5 107 6-112 343-465 (490)
215 3bee_A Putative YFRE protein; 98.7 6.7E-08 2.3E-12 73.1 8.2 73 10-82 2-77 (93)
216 3ly7_A Transcriptional activat 98.7 1.9E-07 6.5E-12 88.0 12.6 136 13-163 195-343 (372)
217 1xi4_A Clathrin heavy chain; a 98.6 1.1E-07 3.7E-12 102.6 11.2 119 11-144 1102-1247(1630)
218 2kkn_A Uncharacterized protein 98.6 4.4E-08 1.5E-12 83.8 4.7 84 223-342 24-112 (178)
219 3e4b_A ALGK; tetratricopeptide 98.5 3.1E-07 1E-11 90.8 10.8 123 10-142 209-346 (452)
220 1s3l_A Hypothetical protein MJ 98.5 2.3E-07 7.8E-12 80.2 8.4 65 222-296 26-90 (190)
221 3mv2_B Coatomer subunit epsilo 98.5 1.2E-06 4.2E-11 81.0 12.7 126 14-142 100-235 (310)
222 1xi4_A Clathrin heavy chain; a 98.5 1.2E-06 4.1E-11 94.8 13.6 140 12-166 1132-1316(1630)
223 3u64_A Protein TP_0956; tetrat 98.5 1.3E-06 4.4E-11 79.2 11.9 109 7-115 145-273 (301)
224 1nzn_A CGI-135 protein, fissio 98.5 3.3E-06 1.1E-10 66.7 12.6 106 25-130 12-122 (126)
225 3mv2_B Coatomer subunit epsilo 98.4 8.8E-07 3E-11 82.0 9.5 118 11-131 133-270 (310)
226 1b89_A Protein (clathrin heavy 98.4 2.4E-07 8.3E-12 89.6 5.4 108 16-142 124-231 (449)
227 4b4t_Q 26S proteasome regulato 98.4 1.5E-06 5E-11 84.6 11.1 127 14-142 4-159 (434)
228 1pc2_A Mitochondria fission pr 98.3 1.5E-06 5.3E-11 71.1 8.0 82 10-91 28-114 (152)
229 2a22_A Vacuolar protein sortin 98.3 2.9E-07 9.8E-12 81.4 3.9 89 222-342 26-123 (215)
230 4b4t_Q 26S proteasome regulato 98.3 2E-06 7E-11 83.6 9.6 131 10-142 51-199 (434)
231 1b89_A Protein (clathrin heavy 98.3 4.5E-06 1.5E-10 80.8 11.6 121 13-142 147-267 (449)
232 3ly7_A Transcriptional activat 98.3 6.9E-06 2.4E-10 77.4 12.6 109 8-117 227-345 (372)
233 3u64_A Protein TP_0956; tetrat 98.3 2.4E-06 8.1E-11 77.4 8.5 107 43-163 147-273 (301)
234 1uf3_A Hypothetical protein TT 98.3 1E-06 3.5E-11 78.2 6.1 71 223-295 7-77 (228)
235 1z2w_A Vacuolar protein sortin 98.2 1.6E-06 5.5E-11 75.0 6.6 64 223-295 12-77 (192)
236 3ck2_A Conserved uncharacteriz 98.1 1.2E-06 4.2E-11 74.6 3.8 58 223-295 8-65 (176)
237 3qwp_A SET and MYND domain-con 98.1 1E-05 3.6E-10 79.0 9.7 90 5-94 320-425 (429)
238 3qww_A SET and MYND domain-con 98.0 1.3E-05 4.6E-10 78.2 9.1 80 5-84 331-423 (433)
239 2yvt_A Hypothetical protein AQ 98.0 2.7E-06 9.1E-11 77.2 3.7 73 222-296 6-104 (260)
240 3ffl_A Anaphase-promoting comp 98.0 3E-05 1E-09 63.9 9.5 111 15-126 21-165 (167)
241 4e6h_A MRNA 3'-END-processing 97.9 0.00018 6E-09 74.3 16.1 131 10-142 374-528 (679)
242 1xm7_A Hypothetical protein AQ 97.9 1.3E-05 4.4E-10 69.4 6.0 69 223-295 3-85 (195)
243 1y8m_A FIS1; mitochondria, unk 97.9 0.0007 2.4E-08 54.2 14.6 86 45-130 36-125 (144)
244 3o48_A Mitochondria fission 1 97.8 0.00022 7.7E-09 56.3 11.0 86 46-131 38-127 (134)
245 4h7y_A Dual specificity protei 97.8 0.00039 1.3E-08 56.1 12.0 111 8-119 7-131 (161)
246 4e6h_A MRNA 3'-END-processing 97.8 5.4E-05 1.8E-09 78.1 8.9 80 32-111 327-407 (679)
247 3rl5_A Metallophosphoesterase 97.5 8.6E-05 3E-09 68.1 5.1 65 221-296 59-125 (296)
248 3d03_A Phosphohydrolase; glyce 97.5 0.00019 6.5E-09 65.2 7.5 68 223-294 2-84 (274)
249 1nzn_A CGI-135 protein, fissio 97.5 0.00033 1.1E-08 55.2 7.4 81 11-91 32-117 (126)
250 3ib7_A ICC protein; metallopho 97.4 0.00014 4.7E-09 68.2 6.0 74 221-294 25-113 (330)
251 2uy1_A Cleavage stimulation fa 97.3 0.0029 9.9E-08 62.8 13.7 128 11-142 210-378 (493)
252 2nxf_A Putative dimetal phosph 97.3 0.00015 5.3E-09 67.4 4.0 71 223-294 7-100 (322)
253 3av0_A DNA double-strand break 97.2 0.00053 1.8E-08 65.9 7.4 73 221-295 20-109 (386)
254 2q8u_A Exonuclease, putative; 97.2 0.00024 8.4E-09 66.9 4.6 72 221-295 18-110 (336)
255 3o48_A Mitochondria fission 1 97.1 0.0032 1.1E-07 49.7 9.5 81 12-92 38-122 (134)
256 1y8m_A FIS1; mitochondria, unk 97.1 0.0066 2.3E-07 48.5 11.2 81 11-91 36-120 (144)
257 1ii7_A MRE11 nuclease; RAD50, 97.1 0.00063 2.1E-08 64.0 6.2 70 223-294 2-88 (333)
258 3ffl_A Anaphase-promoting comp 96.8 0.0036 1.2E-07 51.5 7.2 92 49-142 21-146 (167)
259 2xmo_A LMO2642 protein; phosph 96.7 0.0015 5E-08 64.0 5.9 72 222-295 40-139 (443)
260 2ff4_A Probable regulatory pro 96.5 0.042 1.5E-06 52.5 14.4 98 13-110 114-233 (388)
261 3kae_A CDC27, possible protein 96.5 0.052 1.8E-06 44.5 12.0 100 15-119 34-151 (242)
262 2uy1_A Cleavage stimulation fa 96.4 0.05 1.7E-06 53.8 14.4 114 13-131 285-399 (493)
263 4h7y_A Dual specificity protei 96.3 0.017 5.9E-07 46.5 8.5 98 42-142 7-118 (161)
264 3tho_B Exonuclease, putative; 96.3 0.002 6.9E-08 61.6 3.5 70 223-295 2-92 (379)
265 4fbk_A DNA repair and telomere 96.2 0.0065 2.2E-07 59.1 6.5 53 222-275 77-141 (472)
266 3t1i_A Double-strand break rep 96.2 0.0049 1.7E-07 59.5 5.6 73 222-295 33-153 (431)
267 4fbw_A DNA repair protein RAD3 96.2 0.0062 2.1E-07 58.5 6.1 54 221-275 13-78 (417)
268 1zbp_A Hypothetical protein VP 96.1 0.074 2.5E-06 47.4 12.2 62 22-83 5-66 (273)
269 4g26_A Pentatricopeptide repea 96.1 0.12 4E-06 51.2 15.1 100 13-112 104-205 (501)
270 1ya0_A SMG-7 transcript varian 96.0 0.042 1.5E-06 54.1 11.2 78 50-127 154-231 (497)
271 4g26_A Pentatricopeptide repea 95.8 0.37 1.3E-05 47.6 17.5 124 16-142 28-164 (501)
272 4gns_B Protein CSD3, chitin bi 95.7 0.033 1.1E-06 57.6 9.3 57 16-72 339-395 (754)
273 2qfp_A Purple acid phosphatase 95.4 0.021 7.2E-07 55.4 6.6 70 222-294 120-197 (424)
274 1ya0_A SMG-7 transcript varian 95.4 0.082 2.8E-06 52.1 10.5 81 15-95 153-233 (497)
275 4gns_B Protein CSD3, chitin bi 95.1 0.14 4.6E-06 53.1 11.6 108 30-140 265-393 (754)
276 1xzw_A Purple acid phosphatase 94.8 0.035 1.2E-06 53.8 6.1 71 222-295 127-205 (426)
277 1ute_A Protein (II purple acid 94.5 0.017 5.8E-07 53.1 2.9 72 222-294 7-95 (313)
278 4b4t_R RPN7, 26S proteasome re 94.0 0.35 1.2E-05 46.7 11.2 100 15-114 132-240 (429)
279 2ff4_A Probable regulatory pro 93.8 0.28 9.7E-06 46.7 9.8 63 15-77 172-234 (388)
280 3txn_A 26S proteasome regulato 93.6 1.3 4.5E-05 42.0 14.0 93 19-111 104-210 (394)
281 3mkq_A Coatomer beta'-subunit; 93.4 0.64 2.2E-05 48.4 12.8 49 21-74 659-707 (814)
282 1zbp_A Hypothetical protein VP 93.3 0.51 1.7E-05 42.0 9.7 63 57-119 6-68 (273)
283 3kae_A CDC27, possible protein 92.7 3.6 0.00012 33.9 13.3 68 12-79 60-145 (242)
284 4b4t_P 26S proteasome regulato 91.9 3.5 0.00012 39.9 14.8 100 12-111 135-247 (445)
285 3tgh_A Glideosome-associated p 91.9 0.046 1.6E-06 51.2 1.3 72 223-294 5-86 (342)
286 3mkq_A Coatomer beta'-subunit; 91.7 0.85 2.9E-05 47.4 11.0 121 18-156 633-762 (814)
287 3mkq_B Coatomer subunit alpha; 91.4 1.2 4.1E-05 37.0 9.2 49 22-75 13-61 (177)
288 3qfk_A Uncharacterized protein 91.3 0.098 3.4E-06 52.2 3.1 66 223-293 21-112 (527)
289 3spa_A Mtrpol, DNA-directed RN 90.9 4.8 0.00016 43.0 15.2 101 12-112 125-231 (1134)
290 3txn_A 26S proteasome regulato 89.6 1.7 5.8E-05 41.3 9.8 100 13-112 18-169 (394)
291 2z1a_A 5'-nucleotidase; metal- 89.0 0.29 1E-05 49.0 4.3 67 223-294 31-119 (552)
292 1hp1_A 5'-nucleotidase; metall 88.9 0.15 5E-06 50.7 2.0 67 223-294 10-95 (516)
293 4fhn_B Nucleoporin NUP120; pro 88.4 2.1 7.2E-05 46.9 10.9 93 19-115 817-932 (1139)
294 4h2g_A 5'-nucleotidase; dimer, 88.3 0.28 9.7E-06 49.0 3.7 66 223-293 27-117 (546)
295 4fhn_B Nucleoporin NUP120; pro 88.0 1 3.4E-05 49.4 8.0 95 14-108 842-964 (1139)
296 4b4t_S RPN3, 26S proteasome re 84.8 1.4 4.6E-05 43.3 6.2 67 48-116 231-304 (523)
297 3ztv_A NAD nucleotidase, NADN; 84.0 0.74 2.5E-05 46.4 4.1 66 223-293 14-105 (579)
298 1t71_A Phosphatase, conserved 81.7 0.69 2.4E-05 41.7 2.5 69 222-295 5-76 (281)
299 3mkq_B Coatomer subunit alpha; 80.8 4.7 0.00016 33.4 7.1 55 46-108 6-60 (177)
300 1qsa_A Protein (soluble lytic 79.0 5 0.00017 40.6 8.1 85 25-110 263-347 (618)
301 4gq2_M Nucleoporin NUP120; bet 78.3 14 0.00048 39.4 11.7 95 20-118 816-934 (950)
302 3ive_A Nucleotidase; structura 77.3 0.96 3.3E-05 44.7 2.2 65 223-293 8-96 (509)
303 3gve_A YFKN protein; alpha-bet 76.4 2.1 7.2E-05 39.8 4.2 42 224-265 14-71 (341)
304 1wy6_A Hypothetical protein ST 75.2 12 0.0004 29.7 7.3 80 28-112 75-155 (172)
305 3jyf_A 2',3'-cyclic nucleotide 75.0 2.3 7.7E-05 39.6 3.9 42 224-265 11-68 (339)
306 1wy6_A Hypothetical protein ST 74.5 14 0.00049 29.2 7.6 108 20-132 13-141 (172)
307 2w2u_A Hypothetical P60 katani 72.1 4 0.00014 29.2 3.8 33 10-42 15-47 (83)
308 3c9f_A 5'-nucleotidase; 2',3'- 71.7 1.4 4.6E-05 44.1 1.7 67 223-295 17-108 (557)
309 2cfu_A SDSA1; SDS-hydrolase, l 70.1 9.5 0.00033 38.9 7.6 48 15-62 450-497 (658)
310 3ax2_A Mitochondrial import re 69.1 17 0.00059 25.1 6.3 36 86-121 21-56 (73)
311 3lpz_A GET4 (YOR164C homolog); 69.0 70 0.0024 29.3 12.5 26 80-105 134-159 (336)
312 4b4t_S RPN3, 26S proteasome re 67.0 9.4 0.00032 37.4 6.4 70 10-81 227-303 (523)
313 2crb_A Nuclear receptor bindin 66.4 18 0.0006 26.2 6.0 33 9-41 10-42 (97)
314 3t5v_B Nuclear mRNA export pro 65.6 15 0.00053 35.4 7.6 87 29-115 141-254 (455)
315 2wpv_A GET4, UPF0363 protein Y 65.4 79 0.0027 28.6 11.9 27 80-106 132-158 (312)
316 3ax2_A Mitochondrial import re 65.3 18 0.00061 25.0 5.8 32 19-50 22-53 (73)
317 1t70_A Phosphatase; crystal, X 64.9 8.2 0.00028 34.1 5.1 65 223-294 2-69 (255)
318 2wdc_A SOXB, sulfur oxidation 64.9 3.5 0.00012 41.2 3.1 36 252-293 126-166 (562)
319 4a5x_A MITD1, MIT domain-conta 64.9 12 0.00041 26.8 5.1 32 11-42 13-44 (86)
320 4gq2_M Nucleoporin NUP120; bet 64.8 16 0.00053 39.1 8.2 81 14-94 840-948 (950)
321 2v6y_A AAA family ATPase, P60 64.6 12 0.00041 26.6 5.1 31 12-42 9-39 (83)
322 4b4t_R RPN7, 26S proteasome re 63.1 8.1 0.00028 37.0 5.2 66 47-112 130-198 (429)
323 2crb_A Nuclear receptor bindin 62.2 14 0.00048 26.7 4.8 26 84-109 17-42 (97)
324 3t5x_A PCI domain-containing p 61.6 21 0.00071 30.2 6.9 56 10-65 10-70 (203)
325 1qsa_A Protein (soluble lytic 60.8 33 0.0011 34.5 9.3 115 17-132 217-335 (618)
326 2z06_A Putative uncharacterize 60.3 9.5 0.00033 33.6 4.7 65 223-294 2-69 (252)
327 2ijq_A Hypothetical protein; s 57.9 72 0.0025 25.7 9.1 29 17-45 35-63 (161)
328 3esl_A Checkpoint serine/threo 56.7 84 0.0029 26.4 9.6 84 31-115 61-148 (202)
329 2v6x_A Vacuolar protein sortin 56.0 23 0.00078 25.1 5.3 33 10-42 9-41 (85)
330 2cpt_A SKD1 protein, vacuolar 56.0 24 0.00081 26.9 5.7 31 11-41 15-45 (117)
331 3spa_A Mtrpol, DNA-directed RN 54.6 1.1E+02 0.0036 33.0 11.9 81 49-130 128-214 (1134)
332 1wfd_A Hypothetical protein 15 53.9 23 0.00078 25.7 5.1 32 11-42 12-43 (93)
333 3t5x_A PCI domain-containing p 53.8 34 0.0012 28.9 6.9 31 50-80 16-46 (203)
334 4h1s_A 5'-nucleotidase; hydrol 53.8 11 0.00036 37.3 4.3 65 224-293 6-95 (530)
335 3u84_A Menin; MLL, JUND, ledgf 53.5 1E+02 0.0034 29.1 10.2 102 7-123 250-365 (550)
336 3esl_A Checkpoint serine/threo 52.7 1E+02 0.0035 25.9 11.6 69 10-79 76-146 (202)
337 2rpa_A Katanin P60 ATPase-cont 52.6 20 0.00068 25.1 4.3 32 12-43 10-41 (78)
338 1om2_A Protein (mitochondrial 49.5 28 0.00095 25.4 4.8 33 86-118 24-56 (95)
339 3re2_A Predicted protein; meni 48.6 85 0.0029 29.1 8.8 87 10-111 231-325 (472)
340 1om2_A Protein (mitochondrial 48.3 27 0.00094 25.4 4.6 30 19-48 25-54 (95)
341 2cfu_A SDSA1; SDS-hydrolase, l 47.5 31 0.0011 35.0 6.7 50 82-131 449-498 (658)
342 2vkj_A TM1634; membrane protei 46.4 78 0.0027 22.6 7.1 32 12-43 51-82 (106)
343 4b4t_P 26S proteasome regulato 45.1 2.1E+02 0.0071 27.2 17.2 69 49-117 138-215 (445)
344 4gq4_A Menin; tumor suppressor 42.1 1.5E+02 0.005 28.1 9.5 100 11-125 239-352 (489)
345 2w2u_A Hypothetical P60 katani 38.7 52 0.0018 23.2 4.8 18 93-110 30-47 (83)
346 2yhe_A SEC-alkyl sulfatase; hy 43.7 7 0.00024 39.9 0.0 47 16-62 463-509 (668)
347 2v6y_A AAA family ATPase, P60 36.2 50 0.0017 23.3 4.4 13 65-77 9-21 (83)
348 3re2_A Predicted protein; meni 35.1 1E+02 0.0035 28.5 7.1 44 33-76 276-324 (472)
349 2ijq_A Hypothetical protein; s 34.7 1.8E+02 0.0061 23.4 8.1 60 52-111 36-104 (161)
350 3t5v_B Nuclear mRNA export pro 33.6 74 0.0025 30.6 6.5 63 19-81 181-254 (455)
351 2rpa_A Katanin P60 ATPase-cont 33.4 39 0.0013 23.6 3.3 25 52-76 16-40 (78)
352 2yeq_A Apased, PHOD, alkaline 33.3 67 0.0023 31.5 6.4 34 222-260 117-153 (527)
353 4a5x_A MITD1, MIT domain-conta 33.1 72 0.0024 22.6 4.8 24 88-111 22-45 (86)
354 2wpv_A GET4, UPF0363 protein Y 31.9 2.9E+02 0.0098 24.9 11.4 119 21-141 20-157 (312)
355 4b4t_O 26S proteasome regulato 29.5 3.4E+02 0.012 25.1 10.6 89 23-111 85-198 (393)
356 2v6x_A Vacuolar protein sortin 28.2 95 0.0032 21.8 4.8 20 91-110 22-41 (85)
357 3mv2_A Coatomer subunit alpha; 28.2 3.4E+02 0.012 24.6 14.7 110 10-119 110-244 (325)
358 1wfd_A Hypothetical protein 15 28.1 94 0.0032 22.3 4.8 13 65-77 13-25 (93)
359 2cwy_A Hypothetical protein TT 27.9 1.6E+02 0.0055 21.2 6.1 27 19-45 6-32 (94)
360 4aez_C MAD3, mitotic spindle c 27.6 1.4E+02 0.0047 25.6 6.4 65 8-78 114-180 (223)
361 4a1g_A Mitotic checkpoint seri 26.9 2.4E+02 0.0081 22.4 8.4 81 8-94 65-147 (152)
362 2e2a_A Protein (enzyme IIA); h 26.5 96 0.0033 23.0 4.6 31 11-41 17-47 (105)
363 1wcr_A PTS system, N, N'-diace 25.9 1E+02 0.0034 22.8 4.6 31 11-41 15-45 (103)
364 2wvi_A Mitotic checkpoint seri 25.6 2.6E+02 0.009 22.5 9.7 81 8-94 60-142 (164)
365 2cpt_A SKD1 protein, vacuolar 25.3 96 0.0033 23.5 4.6 14 64-77 15-28 (117)
366 3mkr_B Coatomer subunit alpha; 24.8 3.9E+02 0.013 24.1 14.7 108 10-117 98-233 (320)
367 3k1s_A PTS system, cellobiose- 23.3 1.2E+02 0.0041 22.7 4.6 32 10-41 18-49 (109)
368 4gq4_A Menin; tumor suppressor 22.8 2.2E+02 0.0074 26.9 7.1 57 32-88 282-349 (489)
369 3u84_A Menin; MLL, JUND, ledgf 22.0 1.5E+02 0.0051 28.0 5.9 45 32-76 297-346 (550)
370 3flo_A DNA polymerase alpha su 21.7 1.6E+02 0.0054 28.3 6.3 63 232-294 163-247 (460)
371 3l8r_A PTCA, putative PTS syst 21.7 1.3E+02 0.0045 22.9 4.6 29 12-40 35-63 (120)
372 3myv_A SUSD superfamily protei 21.5 2.1E+02 0.0072 27.2 7.4 31 81-111 189-219 (454)
373 3lew_A SUSD-like carbohydrate 21.0 2.2E+02 0.0074 27.5 7.5 32 81-112 202-233 (495)
374 2dl1_A Spartin; SPG20, MIT, st 20.9 1.7E+02 0.0058 22.1 5.0 45 28-80 17-61 (116)
375 2vy8_A Polymerase basic protei 20.8 65 0.0022 24.5 2.7 31 384-417 102-132 (157)
376 3myv_A SUSD superfamily protei 20.3 1.9E+02 0.0064 27.5 6.8 15 117-131 191-205 (454)
377 3kez_A Putative sugar binding 20.0 2.4E+02 0.0081 26.9 7.4 30 82-111 196-225 (461)
378 2yhe_A SEC-alkyl sulfatase; hy 24.9 23 0.00078 36.1 0.0 47 85-131 464-510 (668)
No 1
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=100.00 E-value=5.2e-81 Score=626.76 Aligned_cols=419 Identities=57% Similarity=0.983 Sum_probs=389.7
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.++.+.++..+|..++.+|++++|++.|+++++++|+++.++.++|.++.++|++++|+..+++|++++|+++.+++++|
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 169 (429)
.+|..+|++++|++.|+++++++|+++.++..++.+.......++++|+..+++.. ........++++++|.+.++.+.
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC-STTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc-hhHhhhhhhhccccccccccccc
Confidence 99999999999999999999999999999999999955555555899998887433 23345556889999999999888
Q ss_pred CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC
Q 014212 170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (429)
Q Consensus 170 ~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~ 249 (429)
...++...++.+++.++....+++.++..++..+.+++..+|+++++..|.+.++.|+||+||++.+|.++|+..+.++.
T Consensus 161 ~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiHG~~~~l~~~l~~~~~~~~ 240 (477)
T 1wao_1 161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSE 240 (477)
T ss_dssp GGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCTTCHHHHHHHHHHHCCCBT
T ss_pred cccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCCCCHHHHHHHHHHcCCCCC
Confidence 86789999999999999999999999999999999999999999999988888999999999999999999999998877
Q ss_pred CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccc
Q 014212 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 329 (429)
.+.+||+|||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||.+++.++|+..+++.+.++|++||+++
T Consensus 241 ~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 320 (477)
T 1wao_1 241 TNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQ 320 (477)
T ss_dssp TBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCTTHHHHHHHHHTTSCSEE
T ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChHHHHHHHhhHHHHHHHHHHhccCCcEE
Confidence 76799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------
Q 014212 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF---------------- 393 (429)
Q Consensus 330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~---------------- 393 (429)
++++++||||||+|||...++++|+.+.|+.++++.+.++|+|||||....++.+++||.|+.|
T Consensus 321 ~~~~~~~~vHgg~~~~~~~~l~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ 400 (477)
T 1wao_1 321 CINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDY 400 (477)
T ss_dssp EETTTEEECSSCCCSSSCCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSCEECTTSSSEEECHHHHHHHHHHTTCCE
T ss_pred EEcCcEEEECCCCCccccCCHHHHHhccCCCCCchhhhhhhhccCCCCccCCcCcCCCCCceeECHHHHHHHHHHcCCeE
Confidence 9999999999999888889999999999999999999999999999998889999999999988
Q ss_pred EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||+++++|+|||||||||||+.++|+
T Consensus 401 iir~H~~~~~g~~~~~~~~~~tvfsa~~y~~~~~n~ 436 (477)
T 1wao_1 401 IIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNK 436 (477)
T ss_dssp EEECCSCCTEEEEEEGGGTEEEEBCCTTTTSSSCCE
T ss_pred EEECCCCCcCCeEEecCCeEEEEeCCcccccCCCcc
Confidence 999999999999999999999999999999999984
No 2
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=100.00 E-value=1.7e-70 Score=508.51 Aligned_cols=267 Identities=60% Similarity=1.065 Sum_probs=256.8
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHH
Q 014212 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 242 (429)
Q Consensus 163 ~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~ 242 (429)
|.++++....++.+.++.+++.+++++.++++++..+|.+++++|.++|+++++..|.+.+++|+|||||++.+|.++|+
T Consensus 1 y~gp~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~l~~p~~~ri~viGDIHG~~~~L~~ll~ 80 (315)
T 3h63_A 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE 80 (315)
T ss_dssp CCSCCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecCCCceEEEEecCCCCHHHHHHHHH
Confidence 45667776669999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHh
Q 014212 243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 322 (429)
Q Consensus 243 ~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (429)
..++++.+++++|||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.++|
T Consensus 81 ~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~~e~~~k~~~~l~~~~~~~f 160 (315)
T 3h63_A 81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF 160 (315)
T ss_dssp HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccccHHHHHHhhhHHHHHHHHHH
Confidence 99998877779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE---------
Q 014212 323 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393 (429)
Q Consensus 323 ~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~--------- 393 (429)
++||+++++++++||||||++||...++++|+.++|+.+++++++++|+|||||....||.+++||.|+.|
T Consensus 161 ~~LPla~ii~~~il~vHGGl~sp~~~~l~~i~~i~R~~~~p~~g~~~dllWsDP~~~~g~~~s~RG~g~~fg~~~~~~fl 240 (315)
T 3h63_A 161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240 (315)
T ss_dssp TTSCSEEEETTTEEECSSCCCSSTTCCHHHHHHCCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred hcCCcEEEEcCCEEEeCCCCCCcccCCHHHHHhCcccccccccchhhhheecCCCCCCCcCcCCCCceEEECHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999998889999999999998
Q ss_pred -------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 -------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||+++++++|||||||||||+.++|+
T Consensus 241 ~~n~l~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~ 283 (315)
T 3h63_A 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNK 283 (315)
T ss_dssp HHHTCSEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCC
T ss_pred HHcCCcEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCcc
Confidence 999999999999999999999999999999999996
No 3
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-69 Score=506.60 Aligned_cols=267 Identities=48% Similarity=0.873 Sum_probs=247.0
Q ss_pred CCCCCCcccCCCCCHHHHHHHH-HHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCC--CCCceEEEccCCCCHHHH
Q 014212 161 PQYSGARIEGDVITLDFVKKMM-DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--DGKHFTVCGDVHGQFYDL 237 (429)
Q Consensus 161 ~~~~~~~~~~~~l~~~~l~~li-~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~--~~~~~~v~GDihG~~~~l 237 (429)
+.|.++++.. ++.+.++.++ +.+++++.++++++..+|.+++++|.++|+++++..| .+.+++|||||||++.+|
T Consensus 2 ~~y~g~~~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~~~~l~~p~~~~~ri~viGDIHG~~~~L 79 (335)
T 3icf_A 2 NAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDV 79 (335)
T ss_dssp ------------CCHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCSSSTTCEEEEECCCTTCHHHH
T ss_pred CCCCCCccCC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEecCCcccCceEEEEecCCCCHHHH
Confidence 4567777766 5999999999 9999999999999999999999999999999999988 778899999999999999
Q ss_pred HHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHH
Q 014212 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 317 (429)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (429)
.++|+..++++..++|||||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.
T Consensus 80 ~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~e~~~k~~~~l~~~ 159 (335)
T 3icf_A 80 LNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNM 159 (335)
T ss_dssp HHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccchHhHhhccHHHHHH
Confidence 99999999987766799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----
Q 014212 318 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF---- 393 (429)
Q Consensus 318 ~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~---- 393 (429)
+.+||++||+++++++++|||||||+||...++++|+.+.|+.+++++++++|+|||||....+|.+++||.|+.|
T Consensus 160 ~~~~f~~LPlaaii~~~il~vHGGl~sp~~~~ld~i~~i~R~~~~p~~g~~~dlLWSDP~~~~g~~~s~RG~g~~FG~~~ 239 (335)
T 3icf_A 160 FAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDI 239 (335)
T ss_dssp HHHHHTTSCSEEEETTTEEECSSCCCSCTTCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSEEECCCC--EEECHHH
T ss_pred HHHHHhhcceeEEEcCcEEEecCCcCCCccCCHHHHHhCccccccccccchhhhhccCCCCcCCcccCCCCCceeeCHHH
Confidence 9999999999999999999999999888999999999999999999999999999999998889999999999998
Q ss_pred ------------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 ------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 ------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||+++++++|||||||||||+.++|+
T Consensus 240 ~~~fl~~n~l~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N~ 287 (335)
T 3icf_A 240 TDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNL 287 (335)
T ss_dssp HHHHHHHTTCSEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCCE
T ss_pred HHHHHHHCCCeEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCCc
Confidence 999999999999999999999999999999999995
No 4
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=100.00 E-value=4.2e-67 Score=482.24 Aligned_cols=246 Identities=40% Similarity=0.837 Sum_probs=232.1
Q ss_pred HHHHHHHhhccc--------CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC
Q 014212 178 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (429)
Q Consensus 178 l~~li~~l~~~~--------~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~ 249 (429)
++.+++.+.+.. .++++++..+|.+++++|.++|+++++..+ +.|+||+||++.+|.++|+..++++.
T Consensus 8 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 83 (299)
T 3e7a_A 8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 83 (299)
T ss_dssp HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCCcccCCCHHHHHHHHHHHHHHHHhCCCeeecCCC----EEEEecCCCCHHHHHHHHHHhCCCCC
Confidence 566666664332 588999999999999999999999999876 99999999999999999999998876
Q ss_pred CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccc
Q 014212 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 329 (429)
+ .|+|||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.++|++||+++
T Consensus 84 ~-~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~e~~~ky~~~l~~~~~~~f~~LPlaa 162 (299)
T 3e7a_A 84 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 162 (299)
T ss_dssp S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred c-cEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchHHHHHHhhHHHHHHHHHHHhhCCceE
Confidence 5 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCC-CCCCCCCCCCCcEEE---------------
Q 014212 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSF--------------- 393 (429)
Q Consensus 330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~-~~~~~~~~~~~~~~~--------------- 393 (429)
++++++||||||| ||+..++++|+.++||.++|++++++|+|||||.. ..+|.+|+||.|+.|
T Consensus 163 ii~~~il~vHGGl-sp~~~~l~~i~~i~R~~~~p~~~~~~dllWsDP~~~~~~~~~~~RG~~~~fG~~~~~~fl~~n~l~ 241 (299)
T 3e7a_A 163 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 241 (299)
T ss_dssp EETTTEEEESSCC-CTTCCCTHHHHTCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred EECCeEEEEcCcc-CcccCCHHHHHhccCCCcCCcchhhhhhhcCCccccccCcccCCCCcceeeCHHHHHHHHHHCCCe
Confidence 9999999999999 89999999999999999999999999999999986 478999999999998
Q ss_pred -EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 -VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 -iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||+++++++||||||||||||.++|+
T Consensus 242 ~IiR~Hq~v~~Gy~~~~~~~~iTvfSapnY~~~~~N~ 278 (299)
T 3e7a_A 242 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNA 278 (299)
T ss_dssp EEEECCSCCTTSEEEETTTTEEEEBCCSSGGGTCCCC
T ss_pred EEEEcCeeeecceEEecCCeEEEEECCcccCCCCCcc
Confidence 999999999999999999999999999999999995
No 5
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=100.00 E-value=3.7e-66 Score=483.77 Aligned_cols=246 Identities=42% Similarity=0.794 Sum_probs=233.3
Q ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (429)
Q Consensus 178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (429)
++.+++++++.+.++++++..+|.+++++|.++|+++++..+ +.|+|||||++.+|.++|+..+.++.+ .|+|||
T Consensus 30 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~p----i~ViGDIHG~~~dL~~ll~~~g~~~~~-~~vfLG 104 (357)
T 3ll8_A 30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT-RYLFLG 104 (357)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTC-CEEECS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEEeccc----ceeeccCCCCHHHHHHHHHhcCCCCCc-EEEECC
Confidence 778899999999999999999999999999999999999876 999999999999999999998887654 699999
Q ss_pred ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEE
Q 014212 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (429)
Q Consensus 258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 337 (429)
||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.++|++||+++++++++||
T Consensus 105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~ 184 (357)
T 3ll8_A 105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 184 (357)
T ss_dssp CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEE
T ss_pred CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchhhhhhccchhHHHHHHHHHHhCCcceEEcccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCC-------CC-CCCCCCcEEE----------------
Q 014212 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------RG-PSKRGVGLSF---------------- 393 (429)
Q Consensus 338 vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~-------~~-~~~~~~~~~~---------------- 393 (429)
||||| ||+..++++|+.++|+.++++.+.++|+|||||....+ |. +++||.|+.|
T Consensus 185 vHGGl-sp~l~~ld~I~~i~R~~e~p~~g~~~DlLWSDP~~~~~~~~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~ 263 (357)
T 3ll8_A 185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263 (357)
T ss_dssp CSSCC-CTTCCSHHHHHTCCCSSCCCSSSHHHHHHHCEECTTTTSCSCCCSEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred EecCc-CcccCCHHHHhhccccccCCccCchhHhhccCccccccccccccccccCCCCCCceEEChHHHHHHHHHCCCeE
Confidence 99999 89999999999999999999999999999999987644 33 5789999999
Q ss_pred EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212 394 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||++++++ +||||||||||||.++|+
T Consensus 264 IiRaHq~~~~Gy~~~~~~~~~g~~~liTvFSApnYc~~~~N~ 305 (357)
T 3ll8_A 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK 305 (357)
T ss_dssp EEECCSCCTTSEEECCBCTTTSSBSEEEECCCTTGGGTSCCC
T ss_pred EEEeccccccceEEecCCcCCCCCcEEEEECCCccCCCCCcc
Confidence 999999999999999886 799999999999999996
No 6
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=100.00 E-value=2.6e-62 Score=474.08 Aligned_cols=247 Identities=42% Similarity=0.776 Sum_probs=231.9
Q ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 014212 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (429)
Q Consensus 177 ~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l 256 (429)
.++.+++++.+...++++++..+|.+++++|.++|+++++..+ ++|||||||++.+|.++|+..+.++. +.||||
T Consensus 42 ~~d~l~~~~~~~~~l~~~~i~~L~~~a~~il~~Ep~ll~l~~p----I~VIGDIHGq~~dL~~LL~~~g~p~~-d~yVFL 116 (521)
T 1aui_A 42 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFL 116 (521)
T ss_dssp CHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEEC
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEeeccc----eeeccCCCCCHHHHHHHHHhcCCCCc-ceEEEc
Confidence 3778899999999999999999999999999999999999866 99999999999999999998887654 569999
Q ss_pred cccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEE
Q 014212 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 336 (429)
Q Consensus 257 GD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 336 (429)
|||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+||..+|+..+|+.+.+||++||+++++++++|
T Consensus 117 GDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il 196 (521)
T 1aui_A 117 GDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFL 196 (521)
T ss_dssp SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEE
T ss_pred CCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccHHHHHhhhhHHHHHHHHHHHhCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCC-------CCCCC-CCCCcEEE---------------
Q 014212 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGPS-KRGVGLSF--------------- 393 (429)
Q Consensus 337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~-------~~~~~-~~~~~~~~--------------- 393 (429)
|||||+ +|...++++|+.++|+.+++..++++|+|||||.... +|.++ .||.|+.|
T Consensus 197 ~VHGGl-sP~~~sld~I~~I~R~~e~p~~g~~~DLLWSDP~~~~g~~~~~~~f~~ns~RG~g~~FG~d~v~~FL~~n~l~ 275 (521)
T 1aui_A 197 CVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLL 275 (521)
T ss_dssp EESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCS
T ss_pred EECCCc-CcccCCHHHhhhccCCcCCCccchhhhheecCccccccccccCcceecccCCCcccccCHHHHHHHHHHcCCc
Confidence 999999 8999999999999999999999999999999998753 34444 79999998
Q ss_pred -EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212 394 -VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 -iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||++++++ +||||||||||||.++|+
T Consensus 276 lIIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~ 318 (521)
T 1aui_A 276 SILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK 318 (521)
T ss_dssp EEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCC
T ss_pred EEEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCce
Confidence 999999999999999987 599999999999999995
No 7
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=100.00 E-value=7.5e-62 Score=452.97 Aligned_cols=251 Identities=38% Similarity=0.714 Sum_probs=237.7
Q ss_pred CCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCC
Q 014212 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252 (429)
Q Consensus 173 l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~ 252 (429)
++...++.+++.+.....++++++..+|.+++++|.++|+++++..+ ++|+||+||++.+|.++|+..+.++.. .
T Consensus 5 ~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~----i~viGDIHG~~~~L~~ll~~~~~~~~~-~ 79 (309)
T 2ie4_C 5 VFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDT-N 79 (309)
T ss_dssp -CHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHSCTTEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTS-C
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEeccCC----EEEEecCCCCHHHHHHHHHHcCCCCCC-E
Confidence 34567899999999999999999999999999999999999999766 999999999999999999999987655 5
Q ss_pred eEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCccccee
Q 014212 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVL 331 (429)
Q Consensus 253 ~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~ 331 (429)
++|+|||||||++|+||+.+|+++|..+|+++++||||||.+.++..|||.+|+.++|+ ..+|+.+.++|++||+++++
T Consensus 80 ~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 80 YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp EEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHHHHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred EEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhhHHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999995 57999999999999999999
Q ss_pred cCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EE
Q 014212 332 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VV 395 (429)
Q Consensus 332 ~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------ii 395 (429)
+++++|||||| +|...++++|+.++|+.+++..+.++|+|||||....+|.+++||.|+.| ||
T Consensus 160 ~~~il~vHgGl-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsdp~~~~~~~~s~RG~g~~fG~~~~~~fl~~n~l~~ii 238 (309)
T 2ie4_C 160 DGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS 238 (309)
T ss_dssp TTTEEECSSCC-CTTCCSHHHHHTSCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEE
T ss_pred cCcEEEECCCC-CCcccCHHHHHhhcccccCChhHHHHHHhhCCCccccccccCCCCcccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999 89999999999999999999999999999999998889999999999988 99
Q ss_pred eeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 396 RSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 396 r~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||++.+||++.++++|||||||||||+.++|+
T Consensus 239 r~Hq~~~~G~~~~~~~~~iTvfSa~ny~~~~~N~ 272 (309)
T 2ie4_C 239 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQ 272 (309)
T ss_dssp ECCSCCTEEEEEETTTTEEEECCCSSGGGTSCCE
T ss_pred ecCcceeCCEEEecCCeEEEEECCcccccCCCCe
Confidence 9999999999999999999999999999999984
No 8
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=100.00 E-value=5.8e-61 Score=449.34 Aligned_cols=246 Identities=40% Similarity=0.828 Sum_probs=229.5
Q ss_pred HHHHHHHhhc--------ccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC
Q 014212 178 VKKMMDDFKN--------QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (429)
Q Consensus 178 l~~li~~l~~--------~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~ 249 (429)
++.+++.+.. ...++++++..+|.+++++|.++|+++++..+ ++|+|||||++++|.++|+..++++.
T Consensus 9 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~l~~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 84 (330)
T 1fjm_A 9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 84 (330)
T ss_dssp HHHHHHHHHHTTTTCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEeecCc----eEEecCCCCCHHHHHHHHHHhCCCCc
Confidence 4555655544 24689999999999999999999999999876 99999999999999999999998765
Q ss_pred CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccc
Q 014212 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (429)
Q Consensus 250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 329 (429)
. .+||+|||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.+||++||+++
T Consensus 85 ~-~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPl~~ 163 (330)
T 1fjm_A 85 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 163 (330)
T ss_dssp S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred c-eEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCceE
Confidence 5 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE---------------
Q 014212 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF--------------- 393 (429)
Q Consensus 330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~--------------- 393 (429)
+++++++|||||+ +|...++++|+.+.|+.++++.++++|+|||||... .+|.++.||.|+.|
T Consensus 164 ~i~~~i~~vHgGl-~p~~~~l~qi~~i~r~~e~~~~g~~~dlLWsdp~~~~~~w~~~~rG~~~~fG~~~~~~fl~~~~l~ 242 (330)
T 1fjm_A 164 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 242 (330)
T ss_dssp EETTTEEEESSCC-CTTCSCHHHHHHCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred EEcCcEEEEccCC-CcccCCHHHHhhhhcCccCcccchHHHHHhcCCccccCCcCcccCCCceeeChHHHHHHHHhCCCc
Confidence 9999999999999 889899999999999999999999999999999865 68889999999888
Q ss_pred -EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212 394 -VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429 (429)
Q Consensus 394 -iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~ 429 (429)
||||||++++||+++++++|||||||||||+.++|+
T Consensus 243 liir~Hq~v~~Gy~~~~~~~lvTvfSapnY~~~~~N~ 279 (330)
T 1fjm_A 243 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNA 279 (330)
T ss_dssp EEEECCSCCTTSEEEETTTTEEEEBCCTTCCSSSCCC
T ss_pred eEecccccccCCeEEccCCeEEEEeCCcccccCCCCc
Confidence 999999999999999999999999999999999985
No 9
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=100.00 E-value=1.3e-36 Score=289.78 Aligned_cols=212 Identities=19% Similarity=0.238 Sum_probs=159.0
Q ss_pred HhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCC-------CCCCeEEccccccCCCCcHHHHHHHHHhhh-
Q 014212 207 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS-------EENPYLFNGDFVDRGSFSVEVILTLFAFKC- 278 (429)
Q Consensus 207 l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~-------~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~- 278 (429)
+..+|.++... .+++++||+||++++|.++|+..+.++ ..+.+||+|||||||++|.||+.+|++++.
T Consensus 60 ~~~~~~~~~~~----~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~ 135 (342)
T 2z72_A 60 KQIMPDTYLGI----KKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQ 135 (342)
T ss_dssp TSCCCSEECCC----CEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHH
T ss_pred cccCcceecCC----CCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence 55667776543 459999999999999999999988654 346799999999999999999999999986
Q ss_pred --hCCCeEEEecCCcccccchh-------hccchhhhhcccchHHHH---HHHHHhccCcccceecCeEEEEecCccCCC
Q 014212 279 --MCPSAIYLSRGNHESKSMNK-------IYGFEGEVRSKLSETFVE---LFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 346 (429)
Q Consensus 279 --~~p~~~~~lrGNhe~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~ 346 (429)
.+|.++++||||||.+.++. .|++..++.......+|+ ...+||+.||++++++ +++|||||+ +|.
T Consensus 136 ~~~~~~~v~~v~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~-~~~~vHgGl-~p~ 213 (342)
T 2z72_A 136 ARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN-DVLYMHGGI-SSE 213 (342)
T ss_dssp HHHTTCEEEECCCHHHHHHHHTCCTTSCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEET-TEEEESSCC-CHH
T ss_pred HhhCCCeEEEEecCCcHHHhhCcccccccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEEC-CEEEEECCC-Chh
Confidence 78999999999999988763 233333332222233433 5678999999999987 799999999 665
Q ss_pred C----CCccccccccCCC-----CCCCCCcccccccCCCCCCCCCCC--CCCC----------CcEEEEEeeccccccCc
Q 014212 347 G----VKLSDIKTIDRFC-----EPPEEGLMCELLWSDPQPLPGRGP--SKRG----------VGLSFVVRSHEVKDEGY 405 (429)
Q Consensus 347 ~----~~~~~i~~~~r~~-----~~~~~~~~~~~lw~dp~~~~~~~~--~~~~----------~~~~~iir~h~~~~~g~ 405 (429)
. .++++|+.+.|+. +++..+..+++|||||........ ..-| .+...|||||+++.+ +
T Consensus 214 ~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~lwsd~~~~w~R~~~~~~fg~~~~~~fl~~~~~~~IV~GHt~~~~-~ 292 (342)
T 2z72_A 214 WISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTSQER-V 292 (342)
T ss_dssp HHHTTCCHHHHHHHHHHHTTSCHHHHHHSHHHHHHHSTTSTTTCCGGGSTTCCHHHHHHHHHHHTCSEEEECSSCCSS-C
T ss_pred hcccCCCHHHHHHHhhhhccccccccccCHHHHhccCCCCCCCcCCcccccCChHHHHHHHHHCCCcEEEECCCcccc-h
Confidence 4 3899999988862 112235678999999865321111 0011 133459999999866 6
Q ss_pred eeecCCeEEEEcCCCCCCCc
Q 014212 406 EIEHDGKLITVFSAPNYCDQ 425 (429)
Q Consensus 406 ~~~~~~~~~t~fs~~~y~~~ 425 (429)
...+++++|||||+++|.|.
T Consensus 293 ~~~~~~~~i~Idsg~~~gg~ 312 (342)
T 2z72_A 293 LGLFHNKVIAVDSSIKVGKS 312 (342)
T ss_dssp EEETTTTEEECCCCGGGSSC
T ss_pred hhhcCCCEEEEECCCCCCCc
Confidence 67789999999999999654
No 10
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=99.97 E-value=1.6e-31 Score=246.88 Aligned_cols=179 Identities=19% Similarity=0.297 Sum_probs=145.6
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~ 302 (429)
+++++||+||++.+|.++++..+.++..+.+||+|||||||++|.||+.+|+++ |..+++|+||||.+.++..+||
T Consensus 2 ~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l----~~~~~~v~GNHe~~~l~~~~g~ 77 (280)
T 2dfj_A 2 ATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLVLGNHDLHLLAVFAGI 77 (280)
T ss_dssp CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHT----GGGEEECCCHHHHHHHHHHTTS
T ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhC----CCceEEEECCCcHHHHhHhcCC
Confidence 489999999999999999999988656678999999999999999999999987 4589999999999999998988
Q ss_pred hhhhhccc-----chHHHHHHHHHhccCcccceecC-eEEEEecCccCCCCCCccccccccCCCC----CCCCCcccccc
Q 014212 303 EGEVRSKL-----SETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE----PPEEGLMCELL 372 (429)
Q Consensus 303 ~~~~~~~~-----~~~~~~~~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~~~~~~~i~~~~r~~~----~~~~~~~~~~l 372 (429)
........ .......+.+||+.||+++.+++ +++|||||+ +|.. ++++++.+.|+.+ .++.+.++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi-~p~~-~l~~~~~~~r~~e~~l~~~~~~~~~~~l 155 (280)
T 2dfj_A 78 SRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGI-TPQW-DLQTAKECARDVEAVLSSDSYPFFLDAM 155 (280)
T ss_dssp SCCCGGGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCC-CTTC-CHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred cccchhhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCC-CcCc-CHHHHHHHHHHHHHhhcCCcHHHHHHHh
Confidence 64321111 12245667899999999988887 999999999 6665 7888888877642 44556788999
Q ss_pred cCCCCCCCCCCCCCCCCc--------------------EEEEEeec-cccccCceeec
Q 014212 373 WSDPQPLPGRGPSKRGVG--------------------LSFVVRSH-EVKDEGYEIEH 409 (429)
Q Consensus 373 w~dp~~~~~~~~~~~~~~--------------------~~~iir~h-~~~~~g~~~~~ 409 (429)
||||. .+|.++.||.+ +.|++|+| +.+++||...+
T Consensus 156 ~~d~~--~~w~~~~~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~~~~~g~~~w~ 211 (280)
T 2dfj_A 156 YGDMP--NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWF 211 (280)
T ss_dssp TCSCC--CSCCTTCCHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGGGCCSSCEEGG
T ss_pred cCCCC--CCcCCCCCCceeEEEeccHHHHHHHhhcCCcEeEEeccChhhcCccccchh
Confidence 99985 56788888866 45688888 77788887665
No 11
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.89 E-value=4.9e-24 Score=195.70 Aligned_cols=169 Identities=18% Similarity=0.253 Sum_probs=115.5
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~ 302 (429)
++.++||+||++..|.++++..+..+..+.+||+||+||||++|.+++.+|..+ .+++|+||||.+.++..+++
T Consensus 20 ~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~------~~~~v~GNHd~~~~~~~~~~ 93 (262)
T 2qjc_A 20 RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAYSVLGNHDAKLLKLVKKL 93 (262)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH------TCEECCCHHHHHHHHHHHCC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC------CCEEEeCcChHHHHhhhcCC
Confidence 599999999999999999999887655467999999999999999999999864 37899999999988877776
Q ss_pred hhh-hhcccc---------hHHHHHHHHHhccCcccceec-CeEEEEecCccCCCCC----Cccc---cccccCCCCCCC
Q 014212 303 EGE-VRSKLS---------ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGV----KLSD---IKTIDRFCEPPE 364 (429)
Q Consensus 303 ~~~-~~~~~~---------~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~~~----~~~~---i~~~~r~~~~~~ 364 (429)
..+ |..+++ ..+.....+||+.||+++.++ .+++|||||+ +|... +.++ ++.+.++.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~-~p~~~~~~~~~~~l~~ir~~~~~~~~~~ 172 (262)
T 2qjc_A 94 GKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGL-HPQRPVDRQYEDEVTTMRNLIEKEQEAT 172 (262)
T ss_dssp -------------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCC-CTTSCGGGCCHHHHHHCCEEEEC-----
T ss_pred CccccccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCC-CCCCCcccCCHHHHhhhhhcccccccCC
Confidence 543 333332 223456779999999999886 5999999999 55431 1222 233322212122
Q ss_pred CCcccccccCCCCCC--CCCCCCCCCCcEEEEEeeccccc
Q 014212 365 EGLMCELLWSDPQPL--PGRGPSKRGVGLSFVVRSHEVKD 402 (429)
Q Consensus 365 ~~~~~~~lw~dp~~~--~~~~~~~~~~~~~~iir~h~~~~ 402 (429)
.+. .++|+||... ..|..+.+|. .+||-||+.+.
T Consensus 173 ~G~--~~~~~d~~~~~~~~w~~~~~g~--~~vvfGHt~~~ 208 (262)
T 2qjc_A 173 GGV--TLTATEETNDGGKPWASMWRGP--ETVVFGHDARR 208 (262)
T ss_dssp --C--CEEEESCSTTCCEEGGGGCCCS--SEEEECCCGGG
T ss_pred CCc--cccccCCCCcCCCChhhccCCC--CEEEECCCccc
Confidence 222 4789998432 2444555554 34789999763
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=1e-20 Score=154.07 Aligned_cols=122 Identities=30% Similarity=0.544 Sum_probs=116.0
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
..+..+|+.++++..+|+.++++|+|++|++.|+++++++|.++.+|.++|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
|+++|.++..+|++++|+..|+++++++|++++++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888763
No 13
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.83 E-value=1e-20 Score=169.67 Aligned_cols=168 Identities=22% Similarity=0.284 Sum_probs=117.2
Q ss_pred eeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 214 VDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 214 ~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
..+..+...++.++||+||++.+|.++++..+.++..+.++|+||+||||++|.+++.+|.. ..+++++||||.
T Consensus 5 ~~~~~~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~------~~~~~v~GNhd~ 78 (221)
T 1g5b_A 5 EKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFRAVRGNHEQ 78 (221)
T ss_dssp EEEEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS------TTEEECCCHHHH
T ss_pred eecCCCCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc------CCEEEEccCcHH
Confidence 34444555679999999999999999999988765566799999999999999999988643 368999999998
Q ss_pred ccchhhccchh---------hhhccc---chHHHHHHHHHhccCccccee---cCeEEEEecCccCCCCCCccccccccC
Q 014212 294 KSMNKIYGFEG---------EVRSKL---SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDR 358 (429)
Q Consensus 294 ~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~~~~~~~~i~~~~r 358 (429)
+.++..+++.. .+...+ ...+.+.+.+||+.||.++.+ +.+++|||||+| +... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~-~~~~------~~~~ 151 (221)
T 1g5b_A 79 MMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYP-FDEY------EFGK 151 (221)
T ss_dssp HHHHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCC-SSBC------CTTC
T ss_pred HHHhhhccCCcHHHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCC-hhhc------ccCC
Confidence 87764433211 111111 235678889999999999876 569999999984 3211 1112
Q ss_pred CCCCCCCCcccccccCCCCCC---CCCCCCCCCCcEEEEEeeccccc
Q 014212 359 FCEPPEEGLMCELLWSDPQPL---PGRGPSKRGVGLSFVVRSHEVKD 402 (429)
Q Consensus 359 ~~~~~~~~~~~~~lw~dp~~~---~~~~~~~~~~~~~~iir~h~~~~ 402 (429)
+. ...+++|++|... .++.++.++.. .+|-||+.+.
T Consensus 152 ~~------~~~~~lw~~~~~~~~~~~~~~~~~~~~--~vv~GHth~~ 190 (221)
T 1g5b_A 152 PV------DHQQVIWNRERISNSQNGIVKEIKGAD--TFIFGHTPAV 190 (221)
T ss_dssp CC------CHHHHHHCCHHHHHHHTTCCCCCBTSS--EEEECSSCCS
T ss_pred Cc------cccccccCchhhhhhccccCCcccCCC--EEEECCCCCc
Confidence 21 1357899986421 23333334443 4788999865
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=1.5e-18 Score=180.94 Aligned_cols=145 Identities=23% Similarity=0.334 Sum_probs=136.1
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...|+.++++.++|.++.++|++++|++.|++|++++|+++.++.++|.++.++|++++|+.+|++|++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
+|.++..+|++++|+++|++|++++|+++.++.++|.++..+|+ +++|+..++ ++++++|++..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~------------~Al~l~P~~~~a 147 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYR------------TALKLKPDFPDA 147 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHH
Confidence 99999999999999999999999999999999999999999888 788887777 889999886444
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=6.4e-18 Score=141.79 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=108.7
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
+....+|+++.+++.+|..++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999876
No 16
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=1.7e-18 Score=145.36 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=115.5
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
...+|+.+..++.+|.+|+..|+|++|++.|+++++++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 87 RRGAAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
++|.+|..+|++++|... +++|++++|+++.++..++.++...|
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999999887765 59999999999999988887765443
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=9.3e-18 Score=149.77 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=81.2
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHHh
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-----------EEYGSAIQDASKAIEI 77 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~ 77 (429)
.+|..+.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+ |++++|+..+++++++
T Consensus 34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555555555555 5555555555555555
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccc
Q 014212 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSI 157 (429)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l 157 (429)
+|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...|+ +++|+..++ +++
T Consensus 114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al 178 (217)
T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR--LDEALAQYA------------KAL 178 (217)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HHH
T ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC--HHHHHHHHH------------HHH
Confidence 55555555555555555555555555555555555 555555555555555554 444444444 788
Q ss_pred ccCCCCCC
Q 014212 158 EVEPQYSG 165 (429)
Q Consensus 158 ~~~~~~~~ 165 (429)
+.+|....
T Consensus 179 ~~~P~~~~ 186 (217)
T 2pl2_A 179 EQAPKDLD 186 (217)
T ss_dssp HHSTTCHH
T ss_pred HhCCCChH
Confidence 88776543
No 18
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.7e-17 Score=134.25 Aligned_cols=118 Identities=27% Similarity=0.433 Sum_probs=112.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|..+..+..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 014212 91 AYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKA 128 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~ 128 (429)
++..+|++++|+..|+++++++ |+++.++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999998888876543
No 19
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.76 E-value=4.4e-18 Score=150.85 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCHHHHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------RAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
.++.+...|..++..|++++|+..|+++++.+|+++.+++. +|.++..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++...+..+...+...+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998777655454444333
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=9.7e-19 Score=156.18 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=124.0
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|.++.+++.+|..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 91 AYLAM-----------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 91 ~~~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++..+ |++++|+..|+++++++|+++.++..++.++...++ +++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 142 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLK 142 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 99999 999999999999999999999999999999999888 778887777
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=5e-18 Score=146.79 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
+++.+++.+|..+..+|++++|++.|+++++++|+++.++..+|.++..+|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
+...+++++|...+.++++++|+++.++..+|.++..+++ +++|+..++ ++++++|....
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~~ 142 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYE------------KTISIKPGFIR 142 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHH------------HHHHhcchhhh
Confidence 9999999999999999999999999999999999998887 788887777 78888886543
No 22
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=4.5e-17 Score=136.25 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=115.2
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
...+|.++.+++.+|..++..|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+.+|++++.++|+++.+++
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
++|.+|..+|++++|+..|+++++++|+++........+...+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999998877655555554444
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=6.4e-17 Score=134.08 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=119.0
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
+....+|..+..++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+.+|++++.++|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
++.+|.++..+|++++|+..|+++++++|+++........+...+..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777666665554
No 24
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.74 E-value=8.6e-17 Score=136.59 Aligned_cols=122 Identities=30% Similarity=0.425 Sum_probs=114.5
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
....+..+..++.+|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (429)
++|.+|..+|++++|+.+|+++++++|+++.++...+.....
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999876666555443
No 25
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.74 E-value=6.8e-17 Score=131.40 Aligned_cols=114 Identities=26% Similarity=0.380 Sum_probs=104.0
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh------
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP------ 82 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------ 82 (429)
..++.+.++.++|+.++++|+|++|+..|++|++++|+++.+|.++|.+|..+|++++|+..|+++++++|++.
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 83 -~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
.+++++|.++..+|++++|+++|+++++..|+ ++....+.
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 58999999999999999999999999999885 55544443
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=8.1e-17 Score=155.99 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=137.1
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 84 (429)
....+|..+.++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3456899999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+++ +++|+..++ ++++++|.+.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl~~~~------------~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD------------QLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH------------HHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHHHHHH------------HHHHhCCCCH
Confidence 99999999999999999999999999999999999999999998886 445555554 9999999876
Q ss_pred CCcc
Q 014212 165 GARI 168 (429)
Q Consensus 165 ~~~~ 168 (429)
.+..
T Consensus 235 ~a~~ 238 (382)
T 2h6f_A 235 SVWN 238 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 27
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=1.3e-18 Score=146.03 Aligned_cols=133 Identities=15% Similarity=0.066 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 98 (429)
.+|..+..+|++++|++.+++++..+|+++.+++.+|.+|+++|++++|+++|+++++++|+++.+|+.+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
++|+.+|+++++++|+++.++..++.++...++ +.+|... .+.++++++|.+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~-----------~~~~al~l~P~~~ 134 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKY-----------WVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHH-----------HHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHH-----------HHHHHHHhCcCCH
Confidence 999999999999999999999999999988775 2222221 2247888888753
No 28
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=8.5e-17 Score=138.96 Aligned_cols=142 Identities=20% Similarity=0.284 Sum_probs=134.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+|+.+.++..+|.++...|++++|+..+++++...|+++.++..+|.++...++++.|...+.+++.++|.+..++..
T Consensus 33 ~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 112 (184)
T 3vtx_A 33 KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYK 112 (184)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
+|.++..+|++++|++.|+++++++|+++.++..+|.++..+++ +++|+..++ ++++++|..
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 174 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--RDEAVKYFK------------KALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTTHHH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhCCccC
Confidence 99999999999999999999999999999999999999999988 788888777 677777653
No 29
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.72 E-value=1e-16 Score=135.87 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=114.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------------------NSQNAVYYANRAFAHTKLEEYGSAIQ 69 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~ 69 (429)
.+....+..+..+|+.+++.|+|++|+..|++++++ +|.+..++.++|.|+..+|++++|+.
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455678899999999999999999999999999999 77778999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHh
Q 014212 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECEKAVKK 131 (429)
Q Consensus 70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~ 131 (429)
++++++.++|+++.+|+++|.+|..+|++++|+..|+++++++|+++ .+...++.+...+..
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 678888887766664
No 30
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=7e-17 Score=144.63 Aligned_cols=136 Identities=22% Similarity=0.279 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
++..++.+|..++..|++++|+..|+++++++| .+..+++++|.++..+|++++|+..|++++..+|+++.+++.+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 458999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~-------~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
|..+|++++|+..|+++++++|+++.. +..+|.++...++ +++|+..++ ++++.+|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~------------~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYK------------HATDVTSK 149 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHTTSSCH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHH------------HHHhcCCC
Confidence 999999999999999999999999944 6666666555554 555555555 88888776
No 31
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.72 E-value=2.6e-17 Score=137.10 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=110.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHHh-
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAV-----YYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~- 77 (429)
...+..+...|+.+++.|+|++|+..|++|++++|+ +.. +|.++|.++..+|+|++|+.+|++|+++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 457888999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 78 ------DPRYPKGY----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 78 ------~p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999877766666655444
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.71 E-value=2.7e-17 Score=171.48 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=124.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
+.+|+.+.++.++|.++.++|++++|++.|++|++++|+++.+|+++|.++..+|++++|+++|++|++++|+++.+|++
T Consensus 37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~ 116 (723)
T 4gyw_A 37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116 (723)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.+|..+|++++|++.|++|++++|+++.++.+++.++..+++ +++|...++
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~--~~~A~~~~~ 169 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD--WTDYDERMK 169 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--CTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc--HHHHHHHHH
Confidence 99999999999999999999999999999999999999988887 445544443
No 33
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.70 E-value=1.3e-15 Score=122.70 Aligned_cols=126 Identities=36% Similarity=0.578 Sum_probs=119.5
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
....+|..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
+.+|.++..+|++++|+..|+++++++|+++.++..++.++..+++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999887764
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-16 Score=126.11 Aligned_cols=126 Identities=32% Similarity=0.482 Sum_probs=120.1
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
......|..+.+++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
++.+|.++..+|++++|+..|+++++++|++..++..++.++...+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998886654
No 35
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.69 E-value=1.1e-15 Score=128.85 Aligned_cols=135 Identities=53% Similarity=0.854 Sum_probs=124.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
......+..++.+|..++..|++++|+..|+++++.+|.+..++.++|.++...|++++|+..+++++..+|.++.+++.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.++..+|++++|+..|+++++++|+++.++..++.+........+++|+..++
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999977777755555555888888776
No 36
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=1.1e-15 Score=145.64 Aligned_cols=125 Identities=30% Similarity=0.471 Sum_probs=120.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDAS 72 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (429)
...|..+.++..+|..++..|+|++|+..|+++++++|++ ..++.++|.++..+|++++|+.+|+
T Consensus 141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4478899999999999999999999999999999999999 6999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.++..+++.
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998873
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.1e-16 Score=155.05 Aligned_cols=151 Identities=10% Similarity=0.054 Sum_probs=132.0
Q ss_pred cccHhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
..+|..+.+|..+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus 125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence 4578899999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
++|.++..+|++++|+.+|+++++++|++..++.+++.++..++.. .++|+ ...+...+.++++++|.+..+
T Consensus 205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~-~~eA~-------~~~el~~~~~Al~l~P~~~~a 276 (382)
T 2h6f_A 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY-NDRAV-------LEREVQYTLEMIKLVPHNESA 276 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS-CSHHH-------HHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-chHHH-------HHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999999999999999998774331 12231 011124455888888886544
No 38
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=1.9e-17 Score=138.83 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 108 (429)
++-.+-..++++++++|+++.+++.+|.+++++|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33344466788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 109 KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 109 l~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
++++|+++.+++.+|.++..+|+ +++|+..++ +++++.|+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~------------~al~l~~~ 136 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKA--PLKAKECFE------------LVIQHSND 136 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCCC
T ss_pred HhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCC
Confidence 99999999999999999999998 788888777 77777664
No 39
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.67 E-value=1.6e-15 Score=123.95 Aligned_cols=122 Identities=30% Similarity=0.430 Sum_probs=112.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.++..+..++.+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVK 130 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 130 (429)
|.++..+|++++|+..|+++++++|+ +..+...+..+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 7777777777665443
No 40
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=5.4e-16 Score=138.84 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------HH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG 84 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~ 84 (429)
.+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++ .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 55678888999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhHHHHHhhcCCc-------------ccccccc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE-------------SERHSVA 149 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~a~~~~~-------------~~~~~~a 149 (429)
|+.+|.++..+|++++|+..|+++++++|+ ++.++..++.++...++..++++..... .+.+.+|
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 199 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKA 199 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999888864455444321 1122445
Q ss_pred ccccccccccCCCC
Q 014212 150 DSIDYQSIEVEPQY 163 (429)
Q Consensus 150 ~~~~~~~l~~~~~~ 163 (429)
...+.++++++|+.
T Consensus 200 ~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 200 VDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCCCC
Confidence 55555777776654
No 41
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.66 E-value=3.2e-15 Score=130.93 Aligned_cols=124 Identities=27% Similarity=0.400 Sum_probs=118.5
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFAHTKLEEYGSAIQDA 71 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~ 71 (429)
...+..+..+..+|..++..|+|++|+..|++++++.|.++ .++.++|.++..+|++++|+.++
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34567888999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 72 SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++..+++
T Consensus 112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988876
No 42
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=6.2e-15 Score=116.37 Aligned_cols=115 Identities=31% Similarity=0.544 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
+.+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998887764
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.66 E-value=2.6e-16 Score=127.82 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=104.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 39 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
++..++|+.+.++.++|.++++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 119 AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
+..+|.++..+++ +++|+..++ ++++++|.+..+
T Consensus 84 ~~~lg~~~~~~~~--~~~A~~~~~------------~al~l~P~~~~a 117 (126)
T 4gco_A 84 YIRKAACLVAMRE--WSKAQRAYE------------DALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCcCCHHH
Confidence 9999999999988 788887777 888888876443
No 44
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=3.1e-16 Score=163.66 Aligned_cols=146 Identities=15% Similarity=0.026 Sum_probs=136.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+|+.+.+++.+|..+...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (429)
+|.++..+|++++ +..|+++++++|+++.++++++.++..+++ +++|+..++ ++++++|.+..++
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~ 571 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLD------------EVPPTSRHFTTAR 571 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------TSCTTSTTHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHH------------hhcccCcccHHHH
Confidence 9999999999999 999999999999999999999999999888 778888777 8888888776554
Q ss_pred c
Q 014212 168 I 168 (429)
Q Consensus 168 ~ 168 (429)
.
T Consensus 572 ~ 572 (681)
T 2pzi_A 572 L 572 (681)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.65 E-value=9.4e-16 Score=123.49 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
.+|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998754
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=5e-16 Score=155.21 Aligned_cols=131 Identities=13% Similarity=0.034 Sum_probs=100.1
Q ss_pred ccHhHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..|..+.+++.+|..+...|++ ++|++.|+++++++|+++.+|..+|.+|..+|++++|+.+|+++++++|+ ..++.+
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 3556677777788888878887 88888888888888887777888888888888888888888888877777 677777
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HhHHHHHhhcCCc
Q 014212 88 RGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--------KKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~--------~~~~~~~a~~~~~ 142 (429)
+|.++..+ |++++|+..|+++++++|+++.++..++.++... ++ +++|+..++
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~--~~~A~~~~~ 245 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI--SQQALSAYA 245 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch--HHHHHHHHH
Confidence 78777777 7777888888888888887777777777777776 55 555555554
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.1e-15 Score=121.38 Aligned_cols=120 Identities=34% Similarity=0.498 Sum_probs=113.4
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (429)
....+..+..++.+|..++..|++++|+..|+++++.+|++ ..++.++|.++...|++++|+..+++++.++|+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 44567889999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+++.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776653
No 48
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=1.6e-14 Score=115.04 Aligned_cols=117 Identities=32% Similarity=0.536 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+..++.+|..+...|++++|++.|+++++..|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998877543
No 49
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=4.3e-15 Score=147.71 Aligned_cols=125 Identities=30% Similarity=0.468 Sum_probs=116.5
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDAS 72 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (429)
...|..+.+++.+|..+++.|+|++|+..|++|++++|.+ ..+|+++|.|+.++|++++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567889999999999999999999999999999999998 7999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++.
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998874
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=7.3e-15 Score=125.63 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=115.6
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...|..+.++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (186)
T 3as5_A 36 DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115 (186)
T ss_dssp CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 116 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 168 (186)
T 3as5_A 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR--HEEALPHFK 168 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999988888888888888776 667766666
No 51
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=1.2e-14 Score=117.30 Aligned_cols=126 Identities=29% Similarity=0.482 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
.+++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.|++++|+..++++++..|+++.++..++.++...++ +++|...++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence 9999999999999999999999999999999887776 667766655
No 52
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.61 E-value=2.2e-14 Score=115.36 Aligned_cols=120 Identities=28% Similarity=0.443 Sum_probs=112.6
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 83 (429)
|..+..++.+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+.++++++...|.+ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999998877 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
+++.+|.++..+|++++|+..|+++++..| ++.....++.+...+++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68888888888776654
No 53
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.60 E-value=7.9e-15 Score=149.82 Aligned_cols=147 Identities=11% Similarity=0.071 Sum_probs=131.7
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
....+|..+.++..+|..+...|++++|++.|+++++++|+++.++.++|.++..+|++++|++.|+++++++|+++.++
T Consensus 15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 94 (568)
T 2vsy_A 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94 (568)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
+++|.+|..+|++++|++.|+++++++|+++.++..++.++..+ ++ +++|...++ ++++.+|.
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~------------~al~~~p~ 160 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVR------------AAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHH------------HHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHH------------HHHhcCCc
Confidence 99999999999999999999999999999999999999999888 66 667766666 77777776
Q ss_pred CCCC
Q 014212 163 YSGA 166 (429)
Q Consensus 163 ~~~~ 166 (429)
...+
T Consensus 161 ~~~~ 164 (568)
T 2vsy_A 161 AVEP 164 (568)
T ss_dssp CSCH
T ss_pred ccCh
Confidence 6544
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=6.8e-16 Score=154.22 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=116.3
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 014212 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 105 (429)
.+++++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45578999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHH---------HhHHHHHhhcCCcc------------------------------ccc
Q 014212 106 QQVKKLSPNDPDAAQKVKECEKAV---------KKLKFEEAIAVPES------------------------------ERH 146 (429)
Q Consensus 106 ~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~~~a~~~~~~------------------------------~~~ 146 (429)
+++++++|+ ..++..++.++..+ ++ +++|+..+++ +++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH--VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999999999 79999999999887 76 4555543332 556
Q ss_pred cccccccccccccCC
Q 014212 147 SVADSIDYQSIEVEP 161 (429)
Q Consensus 147 ~~a~~~~~~~l~~~~ 161 (429)
.+|...+.++++++|
T Consensus 238 ~~A~~~~~~al~~~p 252 (474)
T 4abn_A 238 QQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhCC
Confidence 777777777777766
No 55
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.60 E-value=4.9e-15 Score=135.54 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=121.7
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 81 (429)
...|..+..++.+|..++..|+|++|+..|+++++..|++ +.+++.+|.+++.+|++++|+..|++++...|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3467788999999999999999999999999999999999 9999999999999999999999999999998854
Q ss_pred hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHhHHHHHhhcCCccccccccc
Q 014212 82 PKGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAAQKVKEC---EKAVKKLKFEEAIAVPESERHSVAD 150 (429)
Q Consensus 82 ~~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~a~ 150 (429)
+.+++.+|.++.. +|++++|+..|+++++..|+++.+...+..+ ........+..|..++..+++.+|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6789999999999 9999999999999999999987666222111 1111111122333333334444444
Q ss_pred cccccccccCCCC
Q 014212 151 SIDYQSIEVEPQY 163 (429)
Q Consensus 151 ~~~~~~l~~~~~~ 163 (429)
..+.++++..|..
T Consensus 169 ~~~~~~l~~~p~~ 181 (261)
T 3qky_A 169 VTYEAVFDAYPDT 181 (261)
T ss_dssp HHHHHHHHHCTTS
T ss_pred HHHHHHHHHCCCC
Confidence 4444888887764
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.60 E-value=4.4e-14 Score=120.71 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=143.7
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
....+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 169 (429)
.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++ ++++..|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~------------~~~~~~~~~------ 143 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFK------------IALGLRPNE------ 143 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC------
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHH------------HHHhcCccc------
Confidence 999999999999999999999999999999999999988887 777777776 566555543
Q ss_pred CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhC
Q 014212 170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL 210 (429)
Q Consensus 170 ~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~ 210 (429)
......+...+...+. ...+...+..+.+.....
T Consensus 144 -----~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 144 -----GKVHRAIAFSYEQMGR--HEEALPHFKKANELDEGA 177 (186)
T ss_dssp -----HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHCC
T ss_pred -----hHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCc
Confidence 1122233333333332 344666666666655443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=9.3e-14 Score=124.59 Aligned_cols=132 Identities=22% Similarity=0.226 Sum_probs=106.3
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
..|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+
T Consensus 52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35666778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|.++..+|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 183 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFA 183 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 8888888888888888888888888888888888888777776 556655555
No 58
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.60 E-value=2.5e-14 Score=115.49 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 88 (429)
.+++.+|..++..|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999988 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
|.++..+|++++|+..|+++++..|+++.+......+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999988766655443
No 59
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.59 E-value=1.7e-14 Score=139.28 Aligned_cols=122 Identities=22% Similarity=0.462 Sum_probs=116.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE----------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
....+..+..+|..+++.|+|++|+..|+++++ .+|.+..++.++|.++.++|++++|+.++++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 455678899999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
+++++|+++.+++++|.+|..+|++++|+..|++|++++|+++.++..++.++..+++
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887
No 60
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=1.4e-14 Score=127.78 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=123.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
...+..++.+|..++..|++++|+..|++++ +| ++.+++++|.++..+|++++|+..|++++.++|+++.+++++|.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4567788999999999999999999999995 44 78999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccc
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDP----------------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 154 (429)
++..+|++++|+..|++++++.|++. .++..++.++..+++ +++|+..++
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------ 145 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA------------ 145 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH------------
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHH------------
Confidence 99999999999999999999998877 999999999998887 777777776
Q ss_pred cccccCCCC
Q 014212 155 QSIEVEPQY 163 (429)
Q Consensus 155 ~~l~~~~~~ 163 (429)
+++++.|..
T Consensus 146 ~al~~~p~~ 154 (213)
T 1hh8_A 146 LATSMKSEP 154 (213)
T ss_dssp HHHTTCCSG
T ss_pred HHHHcCccc
Confidence 666666654
No 61
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.59 E-value=8.6e-15 Score=121.65 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=93.5
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
-+.+.|++|++.|+++++++|+++.+|+++|.++..++++ ++|+..|++|++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999999999876 499999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 95 MG-----------KFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 95 ~g-----------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+| ++++|+++|++|++++|++......+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 85 899999999999999999988777665543
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=1.1e-15 Score=127.83 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
-.+-..|+++++++|++..+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++..+|++++|+..|+++++
T Consensus 4 ~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp --CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 111 LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 111 ~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++|+++.+++.+|.++..+|+ +++|+..++ +++++.|..
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 122 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGE--LAEAESGLF------------LAQELIANX 122 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTTC
T ss_pred cCCCCchHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHCcCC
Confidence 999999999999999999998 778877777 777777653
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=2.7e-14 Score=126.30 Aligned_cols=133 Identities=19% Similarity=0.144 Sum_probs=123.4
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
...|..+.++..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAM-GKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~-g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.++... |++++|+..++++++ ..|.+..++..++.++...++ +++|+..++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 137 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLK 137 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999 999999999999999 667778999999999988887 777777766
No 64
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.58 E-value=6.2e-14 Score=134.31 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44566888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--------------------------------------------C--CHHHHHHHHHH
Q 014212 92 YLAMGKFKEALKDFQQVKKLSP--------------------------------------------N--DPDAAQKVKEC 125 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p--------------------------------------------~--~~~~~~~l~~~ 125 (429)
|..+|++++|+..|++++++.| + ++.++..++.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888887777777777766544 3 77888888888
Q ss_pred HHHHHhHHHHHhhcCCc
Q 014212 126 EKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 126 ~~~~~~~~~~~a~~~~~ 142 (429)
+...++ +++|+..++
T Consensus 223 ~~~~g~--~~~A~~~~~ 237 (365)
T 4eqf_A 223 FHLSGE--FNRAIDAFN 237 (365)
T ss_dssp HHHHTC--HHHHHHHHH
T ss_pred HHHCCC--HHHHHHHHH
Confidence 888887 777777766
No 65
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=7.7e-15 Score=142.00 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=61.2
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|+...++..+|..+...|++++|++.|+++++.+|+++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
++...|++++|+..|++++.++|+++.++..++.++...++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 55555555555555555555555544444444444444444
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.2e-14 Score=128.77 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=130.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|....++..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++ ++++..|....+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~------------~~~~~~p~~~~~ 229 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--REKALEMLD------------KAIDIQPDHMLA 229 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--TTHHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHccCcchHHH
Confidence 999999999999999999999999999999999999988776 555655555 777777765443
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.57 E-value=3.3e-14 Score=131.92 Aligned_cols=105 Identities=32% Similarity=0.493 Sum_probs=101.7
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|..+.+++.+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
+|..+|++++|+..|+++++++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999876
No 68
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=1.6e-14 Score=139.74 Aligned_cols=140 Identities=21% Similarity=0.173 Sum_probs=80.9
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|..+.++..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34455555555555555566666666666655555555555555555555555555666656555555555555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
.++..+|++++|+..|+++++.+|++..++..++.++...++ +++|+. .+.++++.+|..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~------------~~~~al~~~p~~ 202 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIH------------HFEKAVTLDPNF 202 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHH------------HHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHH------------HHHHHHhcCCCc
Confidence 666556666666666666666666665555555555555444 344443 334666666654
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=2.6e-14 Score=130.72 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=123.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------hhCHHHHHHHHHHHHHhCC
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTK--------LEEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p 79 (429)
+..+.+++.+|.+++..|++++|+..|+++++..|++ +.+++.+|.+++. +|++++|+..|++++..+|
T Consensus 49 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 49 EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 3448999999999999999999999999999998854 6789999999999 9999999999999999999
Q ss_pred CChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHh--------
Q 014212 80 RYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKK-------- 131 (429)
Q Consensus 80 ~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~-------- 131 (429)
+++.+. +.+|.+|..+|++++|+..|+++++..|+ .+.+++.++.++..+|.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 987766 88999999999999999999999999998 56799999999988743
Q ss_pred HHHHHhhcCCccccccccccccccccccCCCC
Q 014212 132 LKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 132 ~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
.++++|+..++ ++++..|+.
T Consensus 209 ~~~~~A~~~~~------------~~~~~~p~~ 228 (261)
T 3qky_A 209 ERYRRAVELYE------------RLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHH------------HHHHHCTTC
T ss_pred chHHHHHHHHH------------HHHHHCCCC
Confidence 22566666665 788877765
No 70
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.57 E-value=7.3e-14 Score=123.46 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=104.3
Q ss_pred cccHhHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 014212 8 NSSVSRAEELKA----------------LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71 (429)
Q Consensus 8 ~~~p~~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 71 (429)
..+|+++.+++. +|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+.+|
T Consensus 32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 111 (208)
T 3urz_A 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY 111 (208)
T ss_dssp HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346788888888 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 72 SKAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+++++++|+++.+|+++|.+|..+|+ .++|...+++++...|. ..+++.++.++...++ +++|+..++
T Consensus 112 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~--~~~A~~~~~ 181 (208)
T 3urz_A 112 EKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR--YEKARNSLQ 181 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT--HHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 99999999999999999999876654 34455666665432221 2245566666666665 555555444
No 71
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.57 E-value=2.4e-15 Score=143.48 Aligned_cols=143 Identities=21% Similarity=0.311 Sum_probs=98.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQD 70 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~ 70 (429)
...+..+..++.+|+.++..|+|++|+..|+++++..|++. .+++++|.++..+|++++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34577899999999999999999999999999999999987 4899999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccc
Q 014212 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (429)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 150 (429)
|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+...... ....+.
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-------------~~~~a~ 319 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-------------LYQKQK 319 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-------------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877544332 223334
Q ss_pred cccccccccCCCC
Q 014212 151 SIDYQSIEVEPQY 163 (429)
Q Consensus 151 ~~~~~~l~~~~~~ 163 (429)
..+.+++...|..
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 4444666666654
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.4e-14 Score=128.48 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--------------------------LNSQNAVYYANRAFAHTKLEEYGS 66 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~ 66 (429)
.+.++..+|..+...|++++|+..|+++++ .+|.++.++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 378999999999999999999999999999 677778899999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 231 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--YASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888 677777776
No 73
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.1e-13 Score=126.53 Aligned_cols=131 Identities=20% Similarity=0.154 Sum_probs=119.5
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
..|..+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.++.+++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|.++..+|++++|+..|++++++.|+++......+.+ ...++ +++|+..+.
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~ 168 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD--EKQAKEVLK 168 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC--HHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC--HHHHHHHHH
Confidence 9999999999999999999999999999777666554 33344 667776665
No 74
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.55 E-value=1.3e-13 Score=131.71 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=85.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----------
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---------- 79 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------- 79 (429)
+|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4556666667777777777777777777777777777666666666666666666665555555444333
Q ss_pred ---------------------------------------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 80 ---------------------------------------R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 80 ---------------------------------------~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
+ ++.++..+|.++...|++++|+..|+++++++|+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 3 45566667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+..++.++...++ +++|+..++
T Consensus 254 ~~~l~~~~~~~g~--~~~A~~~~~ 275 (368)
T 1fch_A 254 WNKLGATLANGNQ--SEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 7777766666665 455554444
No 75
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.55 E-value=8.4e-14 Score=137.04 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=130.1
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
+.-..+|.++..+..+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCC
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP 161 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~ 161 (429)
++.+|.+|..+|++++|+..|+++++.+|+++ .++..++.++..... +..|..+...+...+|...+.++++..|
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL--RSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999998 888777665443333 4444444445555555555556666655
Q ss_pred CC
Q 014212 162 QY 163 (429)
Q Consensus 162 ~~ 163 (429)
..
T Consensus 175 ~~ 176 (450)
T 2y4t_A 175 WD 176 (450)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 76
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.55 E-value=1e-13 Score=130.06 Aligned_cols=131 Identities=16% Similarity=0.039 Sum_probs=98.2
Q ss_pred cHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
+|..+.++..+|..+...| ++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4556667777777777777 777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 217 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFL 217 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 7777777777777777777777777777777777777776666 566665555
No 77
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=6.6e-14 Score=123.78 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=123.9
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHH--hCCCChHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIE--IDPRYPKGY 85 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~ 85 (429)
..|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++... |++++|+..++++++ .+|.+..++
T Consensus 37 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (225)
T 2vq2_A 37 SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116 (225)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence 35667889999999999999999999999999999999999999999999999 999999999999999 667778999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+.+|.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 171 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888 778877777
No 78
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.7e-14 Score=130.67 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG 89 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 89 (429)
++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999 4444 44599999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
.++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++ ++++.+|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~al~~~~~~ 141 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYME------------KQIRPTTTD 141 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHG------------GGCCSSCCC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHhhcCCCc
Confidence 999999999999999999999999999999999999999888 788888777 666665543
No 79
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=4.3e-14 Score=127.88 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=124.4
Q ss_pred CcccHhH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 7 ENSSVSR-AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 7 ~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
...+|.. +.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++
T Consensus 29 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 4456776 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+|.++..+|++++|+..|+++++ ..|.++.++..++.++...++ +++|+..++
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 165 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFE 165 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999 888999999999999988887 777777766
No 80
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.54 E-value=3.7e-14 Score=135.88 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=82.3
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----------
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---------- 79 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------- 79 (429)
+|..+.++..+|..+...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++++|
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 174 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence 3444555555555555555555555555555555555555555555555555555555554444444332
Q ss_pred ----------------------------------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 80 ----------------------------------R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 80 ----------------------------------~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
+ ++.+++.+|.++..+|++++|+..|+++++..|+++.++..++
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 254 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 4555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhHHHHHhhcCC----------------------ccccccccccccccccccCCCCCCC
Q 014212 124 ECEKAVKKLKFEEAIAVP----------------------ESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 124 ~~~~~~~~~~~~~a~~~~----------------------~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
.++...++ +++|+..+ ..++..+|...+.+++++.|.....
T Consensus 255 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 255 ATLANGDR--SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 55555554 22332222 2234445555555777777765543
No 81
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=1.7e-14 Score=112.83 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=102.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYR 87 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 87 (429)
+|..+..+..+|..++..|++++|+..|+++++.+|.+..++.++|.++..+|++++|+..++++++.+|. +..+++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 014212 88 RGAAYLAM-GKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 88 la~~~~~~-g~~~eA~~~~~~al~~~p~~~ 116 (429)
+|.++..+ |++++|++++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999764
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=7.4e-14 Score=126.31 Aligned_cols=131 Identities=21% Similarity=0.172 Sum_probs=124.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCCCChHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDPRYPKGYYR 87 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 87 (429)
.|..+.++..+|..+...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++. ..|.++.+++.
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999 88889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|.++..+|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 199 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYD 199 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999988887 777777776
No 83
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=1.2e-13 Score=118.38 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=107.2
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHHhCCCChHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA-HTKLEEY--GSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~ 85 (429)
.+|..+.+++.+|..+...|++++|+..|+++++++|+++.++..+|.+ +...|++ ++|+..+++++..+|+++.++
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 118 (177)
T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118 (177)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence 4577788999999999999999999999999999999999999999999 8899998 999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
+.+|.++..+|++++|+..|+++++++|+++.....+..+.
T Consensus 119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 119 MLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999876655554443
No 84
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.54 E-value=8.1e-14 Score=130.79 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---------CCCh
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---------PRYP 82 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~ 82 (429)
.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++... |..+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 3344555566666666666666666666666666666666666666666666666666666666654 4455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
.++..+|.++..+|++++|+..|+++++++|+++.++..++.++...++ +++|+..++ ++++++|.
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~ 302 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN--FENAVDYFH------------TALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--HHHHHHHHH------------TTTTTCSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHccCCC
Confidence 6666666666666666666666666666666666666666666666665 555555555 77777665
Q ss_pred C
Q 014212 163 Y 163 (429)
Q Consensus 163 ~ 163 (429)
.
T Consensus 303 ~ 303 (330)
T 3hym_B 303 D 303 (330)
T ss_dssp C
T ss_pred c
Confidence 4
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.54 E-value=3.8e-14 Score=126.83 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH---HHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYY 86 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 86 (429)
.+..++.+|..++..|+|++|+..|+++++..|++ ..+++.+|.+++.+|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46789999999999999999999999999999886 478999999999999999999999999999999875 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHhHHHHHhhcCCcccc
Q 014212 87 RRGAAYLA------------------MGKFKEALKDFQQVKKLSPNDPDAA---QKVKECEKAVKKLKFEEAIAVPESER 145 (429)
Q Consensus 87 ~la~~~~~------------------~g~~~eA~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~a~~~~~~~~ 145 (429)
.+|.++.. +|++++|+..|+++++..|+++.+. ..++.+...+....+..|..++..++
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999886 5789999999999999999997554 34444444444444556666667777
Q ss_pred ccccccccccccccCCCC
Q 014212 146 HSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 146 ~~~a~~~~~~~l~~~~~~ 163 (429)
+.+|...+.++++..|+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 777777777999888864
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.54 E-value=1.3e-14 Score=151.34 Aligned_cols=176 Identities=11% Similarity=-0.024 Sum_probs=143.0
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAI--------ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
.+|.++.+++..| ...|++++|++.|++++ +.+|++..+++.+|.++..+|++++|+..|+++++++|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4556666666666 88999999999999999 999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccC
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~ 160 (429)
++.+|+.+|.++..+|++++|+..|++|++++|+++.++..++.++..+++ +.+ ...+.++++++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--------------~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN--------------TDE-HKFYQTVWSTN 530 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--------------CCT-TCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------hHH-HHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988875 444 56666999999
Q ss_pred CCCCCCcccCCC--CCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q 014212 161 PQYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQ 202 (429)
Q Consensus 161 ~~~~~~~~~~~~--l~~~~l~~li~~l~~~~~l~~~~~~~ll~~ 202 (429)
|.+..+....+. ...+..+..+..+.+...+.+.........
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHH
Confidence 988766544331 122335556666666665555444444333
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.53 E-value=8.9e-14 Score=129.67 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=135.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCC-
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRY- 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~- 81 (429)
.+..+.++.++|.+|...|++++|+.+|++++++.|.. +.++.++|.+|... |++++|+.+|++|+++.|..
T Consensus 73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 34557899999999999999999999999999987653 56889999999996 99999999999999998754
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHhHHHHHhhcCCcccccccc
Q 014212 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPESERHSVA 149 (429)
Q Consensus 82 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a 149 (429)
..++.++|.++..+|++++|+..|++++++.|++.. ++..++.++..+++ +++|+..++
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------- 223 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ------- 223 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH-------
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHH-------
Confidence 567899999999999999999999999999988754 56778888887777 677777776
Q ss_pred ccccccccccCCCCCCCcccCC---------CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHh
Q 014212 150 DSIDYQSIEVEPQYSGARIEGD---------VITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLR 208 (429)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~---------~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~ 208 (429)
++++++|.+........ .-..+.....+..+.....+++.. ..++..++..+.
T Consensus 224 -----~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~~~ 285 (292)
T 1qqe_A 224 -----EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKESIQ 285 (292)
T ss_dssp -----GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHHHH
T ss_pred -----HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHHhh
Confidence 77777887654321100 002233555666666666666654 345555555553
No 88
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=6.3e-14 Score=132.90 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 93 LAMGKFKEALKDFQQVKKLSP---NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
..+|++++|+..|+++++.+| +++.++..++.+...... +..|..+...++..+|...+.++++..|..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL--RSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999 999998888655443333 444555555556666666666777776654
No 89
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=2.8e-14 Score=122.49 Aligned_cols=140 Identities=14% Similarity=0.012 Sum_probs=117.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|...+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4555667889999999999999999999999999999999999999999999999999999999999999 887766666
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 90 AAYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 90 ~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
.+.. ..++..+|+..++++++.+|+++.++..++.++...|+ +++|+..++ ++++.+|.+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~ 142 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLW------------NILKVNLGAQ 142 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTCTTTT
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHhCcccC
Confidence 5433 33344568999999999999999999999999988887 777777777 7788877653
No 90
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=9.9e-15 Score=120.75 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=104.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
..|+++++++|++...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++.+++.++.++..+++ +++|+..++ +++++.|..
T Consensus 85 ~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 119 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD--LDGAESGFY------------SARALAAAQ 119 (142)
T ss_dssp CTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCC
Confidence 99999999999999998 778887777 777776643
No 91
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=2e-14 Score=123.19 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=114.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCH--
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YLAMGKF-- 98 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 98 (429)
..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++.++|+++.+++.+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++|+..|+++++.+|+++.++..++.++...++ +++|+..++ ++++..|..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQ------------KVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhhCCCC
Confidence 999999999999999999999999999988887 777777777 778777764
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.52 E-value=2.5e-14 Score=133.20 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=128.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999987777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
.+...++.++|+..|+++++.+|+++++++.++.++...|+ +++|+..+. +++..+|.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~------------~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLF------------GHLRXDLTA 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTG
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhccccc
Confidence 89899999999999999999999999999999999988887 777777777 888888876
No 93
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.52 E-value=3e-14 Score=113.62 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=88.4
Q ss_pred HhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 26 RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 26 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
..|++++|+..|++++++ +|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 014212 103 KDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~ 123 (429)
..|+++++..|+++.+.....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999998764433
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.51 E-value=1.9e-13 Score=122.29 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=117.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------hhCHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTK------------------LEEYGSAI 68 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~------------------~g~~~~A~ 68 (429)
++....+++.+|.+++..|++++|+..|+++++..|+++. +++.+|.++.. .|++++|+
T Consensus 37 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 37 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence 3445689999999999999999999999999999999864 78999999886 57999999
Q ss_pred HHHHHHHHhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 014212 69 QDASKAIEIDPRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKA 128 (429)
Q Consensus 69 ~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~ 128 (429)
..|+++++.+|+++.++ +.+|.+|...|++++|+..|+++++..|+++ +++..++.++..
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 99999999999987665 6789999999999999999999999999986 679999999999
Q ss_pred HHhHHHHHhhcCCc
Q 014212 129 VKKLKFEEAIAVPE 142 (429)
Q Consensus 129 ~~~~~~~~a~~~~~ 142 (429)
+|+ +++|+..++
T Consensus 197 ~g~--~~~A~~~~~ 208 (225)
T 2yhc_A 197 MQM--NAQAEKVAK 208 (225)
T ss_dssp TTC--HHHHHHHHH
T ss_pred cCC--cHHHHHHHH
Confidence 998 677776665
No 95
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.51 E-value=1.6e-13 Score=131.09 Aligned_cols=128 Identities=13% Similarity=0.239 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 93 LAMGKFKEALKDFQQVKKLSPND-----------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+|++++|+..|++++++.|++ ..++..++.++..+|+ +++|...+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ--SDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC--GGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC--hHhHHHhHH
Confidence 99999999999999999999988 8899999999998887 455554444
No 96
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=2.1e-13 Score=127.80 Aligned_cols=131 Identities=14% Similarity=0.152 Sum_probs=124.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|..+.++..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++..+|++++|+..|+++++..|+ ++.++..++.++..+++ +++|...++
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 310 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR--PDLVELTYA 310 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 9999999999999999999999999 78999999999999888 777777776
No 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.50 E-value=1.7e-13 Score=127.82 Aligned_cols=140 Identities=10% Similarity=-0.008 Sum_probs=114.7
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA--FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
|..+.++..+|.++.+.|++++|++.|+++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+++++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 566778889999999999999999999999999998865444333 333445889999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH-hhcCCccccccccccccccccccCCCCC
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE-AIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
|.++..+|++++|+..|+++++++|++++++.+++.++...|+ ..+ +..+++ ++++++|++.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~--~~eaa~~~~~------------~~~~~~P~~~ 269 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK--PPEVTNRYLS------------QLKDAHRSHP 269 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHH------------HHHHHCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHH------------HHHHhCCCCh
Confidence 9999999999999999999999999999999999988888776 322 233333 7777887753
No 98
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.5e-13 Score=120.42 Aligned_cols=117 Identities=27% Similarity=0.435 Sum_probs=112.1
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKEC 125 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~ 125 (429)
|.++..+|++++|+..|+++++++ |++..++..++.+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 9988888777654
No 99
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.48 E-value=2.8e-14 Score=129.70 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=85.8
Q ss_pred CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhcc
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~ 301 (429)
.++.++||+||++..+..+++... ..+.++++||++|+|+++.+++.++.+++. +++++||||.........
T Consensus 4 mri~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~~-----~~~v~GNhD~~~~~~~~~ 75 (246)
T 3rqz_A 4 MRILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLAP-----NISVIGNHDWACIGRLSL 75 (246)
T ss_dssp CCEEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHCS-----SEECCCHHHHHHTCCCCC
T ss_pred cEEEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcCC-----CEEEeCchHHHHhccCCc
Confidence 468999999999999999999877 345699999999999999999999988852 688999999887653221
Q ss_pred --chh---hhhcccchHHHHHHHHHhccCcccceecCeEEEEecCcc
Q 014212 302 --FEG---EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLF 343 (429)
Q Consensus 302 --~~~---~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~ 343 (429)
+.. .........+.....+|+..+|.....+ +++++||++.
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~-~i~~~Hg~p~ 121 (246)
T 3rqz_A 76 DEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDG-DWTVVHGSPR 121 (246)
T ss_dssp C--CGGGGCHHHHHHHHCCHHHHHHHHHCCSEEEET-TEEEESSCSS
T ss_pred cccCHHHHHHHHHHHHHcCHHHHHHHHhCCcEEEEC-CEEEEECCcC
Confidence 111 1111112334456678999999987754 8999999873
No 100
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.9e-13 Score=124.94 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|.++.+++.+|....
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777773333
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
..+++++|+..|+++++++|+++.++..++.++..+++
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 34477777777777777777777777777666665553
No 101
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.47 E-value=3.9e-13 Score=127.36 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=121.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---CChHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGY 85 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~ 85 (429)
.+|..+.++..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| +++.++
T Consensus 32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 111 (359)
T 3ieg_A 32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999 888888
Q ss_pred HHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 86 YRR------------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 86 ~~l------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+ |.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 178 (359)
T 3ieg_A 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 877 7899999999999999999999999999999999999988887 677776666
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.46 E-value=1.8e-13 Score=117.50 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=115.6
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
....+|..+.+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|+++.+
T Consensus 32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~ 110 (176)
T 2r5s_A 32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFEL 110 (176)
T ss_dssp SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHH
Confidence 3456899999999999999999999999999999999999 8877766665533 3345557899999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++.+|.++..+|++++|+..|+++++.+|+. +.++..++.++..+|+ .++|+..++
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~A~~~y~ 168 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ--GNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS--SCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC--CCcHHHHHH
Confidence 9999999999999999999999999999986 5699999999988887 455554443
No 103
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.45 E-value=5.7e-13 Score=107.05 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
.++.+|.++.+.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++ +++|+..++ ++++.+|.+
T Consensus 99 g~--~~~A~~~~~------------~al~~~P~~ 118 (121)
T 1hxi_A 99 HN--ANAALASLR------------AWLLSQPQY 118 (121)
T ss_dssp HH--HHHHHHHHH------------HHHC-----
T ss_pred CC--HHHHHHHHH------------HHHHhCcCC
Confidence 88 788888777 667766665
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.44 E-value=2.1e-12 Score=113.65 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----------
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------- 82 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------- 82 (429)
.+.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++++.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 83 ------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 83 ------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
.+++++|.++..+|++++|+..|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998754
No 105
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.44 E-value=1.4e-12 Score=128.32 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=99.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCHHHHHHHHHHHHHh
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~ 77 (429)
.|..+.++..+|..+...|++++|+..|+++++.+|++...+..+ |.++...|++++|+..|++++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344566777777777777777777777777777777777666555 77777777777777777777777
Q ss_pred CCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccc
Q 014212 78 DPRYP----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID 153 (429)
Q Consensus 78 ~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~ 153 (429)
.|+++ .++..+|.++..+|++++|+..++++++++|+++.++..++.++...++ +++|+..++
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~----------- 353 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYE----------- 353 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH-----------
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--HHHHHHHHH-----------
Confidence 77764 3667777777777777777777777777777777777777777776666 566665555
Q ss_pred ccccccCCCC
Q 014212 154 YQSIEVEPQY 163 (429)
Q Consensus 154 ~~~l~~~~~~ 163 (429)
++++++|..
T Consensus 354 -~al~~~p~~ 362 (450)
T 2y4t_A 354 -TAQEHNEND 362 (450)
T ss_dssp -HHHTTSSSC
T ss_pred -HHHHhCcch
Confidence 677776664
No 106
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.6e-13 Score=107.90 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (429)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (429)
|..+..+..+|..++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
++..+++ +++|+..++ ++++++|.
T Consensus 81 ~~~~~~~--~~~A~~~~~------------~al~~~p~ 104 (126)
T 3upv_A 81 AQIAVKE--YASALETLD------------AARTKDAE 104 (126)
T ss_dssp HHHHTTC--HHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHH------------HHHHhCcc
Confidence 9999888 778877777 77777643
No 107
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.43 E-value=1.2e-12 Score=131.63 Aligned_cols=124 Identities=25% Similarity=0.330 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (429)
+.++..+|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666666666555 5555555555555555666666666555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 140 (429)
..|++++|+..|+++++.+|+++.++..++.++...++ +++|+..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 366 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAF 366 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Confidence 55555556655655555555555555555555555555 3444433
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.43 E-value=3.9e-13 Score=125.08 Aligned_cols=132 Identities=11% Similarity=-0.021 Sum_probs=120.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..+|+++.+++.+|.++...|++++|+..|+++++.+|+........+..+...++.++|+..+++++..+|+++.+++.
T Consensus 145 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~ 224 (287)
T 3qou_A 145 QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQ 224 (287)
T ss_dssp HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHH
Confidence 35788899999999999999999999999999999999888778888888999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~a~~~~ 141 (429)
+|.++..+|++++|+..|+++++.+|++ ..++..++.++..+|+ .++|...+
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~a~~~~ 278 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT--GDALASXY 278 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC--CCcHHHHH
Confidence 9999999999999999999999999999 8899999999998886 34444433
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.42 E-value=5e-13 Score=108.34 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AA 119 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~ 119 (429)
.+.++.++|.++++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|++++|+..|+++++++|++.. ++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999988754 45
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCc
Q 014212 120 QKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 120 ~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+|.++..+++ +++|+..++
T Consensus 87 ~~lg~~~~~~~~--~~~A~~~~~ 107 (127)
T 4gcn_A 87 SRAGNAFQKQND--LSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHcCC--HHHHHHHHH
Confidence 555555555555 566666555
No 110
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.41 E-value=4.5e-13 Score=136.85 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=104.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
|.++..+..+|..+.+.|++++|++.|+++++.+|++..++..++.++...|++++|+..+++++...|+++.++..+|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 67788899999999999999999999999998888887777777777777888888888888777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|...|++++|+..|+++++++|++..++..++.++...++ +++|+..++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 431 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--HDQAISAYT 431 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 88888888888888888777777777777777777777776 566665554
No 111
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.41 E-value=4.4e-13 Score=111.56 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK-----GYYRRGAAYLAMGKFKEALKDFQQVKKL---- 111 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~---- 111 (429)
+..+.++|..++..|+|++|+..|++|++++|+ +.. +|.++|.++..+|++++|+.+|++|+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcc
Q 014212 112 ---SPNDPDAA----QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168 (429)
Q Consensus 112 ---~p~~~~~~----~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 168 (429)
+|++..+| +++|.++..+++ +++|+..++ ++++++|+..+..-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~------------kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFK------------KVVEMIEERKGETP 140 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHHCCSCCT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCcHHHHH
Confidence 99999999 999999999998 788888888 89999888665433
No 112
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.41 E-value=1.9e-12 Score=132.28 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCC-hHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY-PKGY 85 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~ 85 (429)
+...+..+|..+.+.|++++|++.|+++++..|.++.+|..+|.++.+.|++++|++.|+++++. +|++ ..+|
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555555555444 3332 3445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
..+|.++...|++++|+..|+++++++|+++.++..++.++...|+ +++|...+ .++++++|...
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~------------~~~l~~~p~~~ 584 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI--PGLAITHL------------HESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC--HHHHHHHH------------HHHHHHCTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHH------------HHHHhcCCCCh
Confidence 5555555555555555555555555555555555555555444444 34444433 36777776653
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=6.1e-12 Score=101.04 Aligned_cols=106 Identities=32% Similarity=0.540 Sum_probs=101.3
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|.....+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.+++.+|
T Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 110 (136)
T 2fo7_A 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
.++...|++++|...++++++.+|++
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999863
No 114
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.40 E-value=3.2e-13 Score=123.20 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=84.7
Q ss_pred ceEEEccCCCCHHHHHHHHHHcC---CCC-CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchh
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNG---LPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK 298 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~---~~~-~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~ 298 (429)
++.++||+||++..+.++++... ..+ ..+.++++||++|+|+.+.+++.+|..++... .+++++||||......
T Consensus 3 ~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~--~~~~v~GNhD~~~~~~ 80 (252)
T 1nnw_A 3 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKE--NVKIIRGKYDQIIAMS 80 (252)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHS--CEEEECCHHHHHHHHS
T ss_pred EEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhc--CeeEEecchHHHhhcc
Confidence 48899999999999999887654 321 34579999999999999999999999886433 4899999999876542
Q ss_pred hccch--hh------------hhcccchHHHHHHHHHhccCccccee--cC-eEEEEecCc
Q 014212 299 IYGFE--GE------------VRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGL 342 (429)
Q Consensus 299 ~~~~~--~~------------~~~~~~~~~~~~~~~~~~~lp~~~~~--~~-~~~~vH~gi 342 (429)
...+. .. ........+.....+|+..+|....+ ++ +++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p 141 (252)
T 1nnw_A 81 DPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP 141 (252)
T ss_dssp CTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS
T ss_pred ccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCC
Confidence 21110 00 00001223455567899999987654 34 899999976
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=1e-12 Score=120.06 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=120.4
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 77 (429)
.+|..+.++..+|..+...|++++|+..|+++++.. |....++.++|.++..+|++++|+..+++++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999873 566788999999999999999999999999998
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 78 -----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+|....++.++|.++..+|++++|+..|++++++ .|....++..++.++...++ +++|+..++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 193 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYK 193 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 4677889999999999999999999999999999 67778889999999999988 777777776
No 116
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=1.8e-12 Score=120.82 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=84.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|+++.+++.+|..+...|++++|++.|++ |.+..++..+|.++.++|++++|+..++++++.+|++.......+
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 355556666666666666666666666665 566666666666666666666666666666666666543322222
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 90 --AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 90 --~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
..+...|++++|+..|+++++..|+++.++..++.++..+|+ +++|...++ ++++.+|.+..+
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~------------~al~~~p~~~~~ 236 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQ------------EALDKDSGHPET 236 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCHHH
Confidence 222233566666666666666666666666666666666665 455555555 889888876443
No 117
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.40 E-value=1.5e-13 Score=126.32 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=85.7
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhc--
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY-- 300 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~-- 300 (429)
++.+++|+||++..|.++++...... .+.++++||+|++|+.+.+|+.+|.+++ .+++++||||........
T Consensus 13 ~i~~iSDiHg~~~~l~~vl~~~~~~~-~D~ii~~GDlv~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~~ 86 (270)
T 3qfm_A 13 KIALLSDIHGNTTALEAVLADARQLG-VDEYWLLGDILMPGTGRRRILDLLDQLP-----ITARVLGNWEDSLWHGVRKE 86 (270)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHTT-CCEEEECSCCSSSSSCSHHHHHHHHTSC-----EEEECCCHHHHHHHHHHTTC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCHHHHHHHHHccC-----CEEEEcCChHHHHHHhhccc
Confidence 58999999999999999998775433 4569999999999999999999998773 478899999998776432
Q ss_pred -cchhhhhc------cc-chHHHHHHHHHhccCccccee--cC-eEEEEecCc
Q 014212 301 -GFEGEVRS------KL-SETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGL 342 (429)
Q Consensus 301 -~~~~~~~~------~~-~~~~~~~~~~~~~~lp~~~~~--~~-~~~~vH~gi 342 (429)
+|...... .+ ...+.....+|++.||....+ ++ ++++|||..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~p 139 (270)
T 3qfm_A 87 LDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLP 139 (270)
T ss_dssp SCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSBT
T ss_pred cCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECCC
Confidence 23221110 11 123445667999999998755 44 899999643
No 118
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=5.1e-12 Score=118.55 Aligned_cols=131 Identities=14% Similarity=0.007 Sum_probs=119.4
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
+|....+|..+|..+...|++++|.+.|++++++.|.++. +|.++|.++.+.|++++|...|+++++.+|.+..+|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6788899999999999999999999999999999999987 999999999999999999999999999999999888877
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 89 a~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+..... +|++++|...|+++++..|+++.++..++..+...|+ +++|...++
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 227 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE 227 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 766543 7999999999999999999999999999988877776 677777776
No 119
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.39 E-value=1.1e-12 Score=110.90 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
++.++..++.+|.+++..|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+++.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 124 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
.++..+++ +++|+..++ ++++++|.+..+
T Consensus 87 ~~~~~~g~--~~~A~~~~~------------~al~~~p~~~~~ 115 (164)
T 3sz7_A 87 LARFDMAD--YKGAKEAYE------------KGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHTTC--HHHHHHHHH------------HHHHHHSSSCCH
T ss_pred HHHHHccC--HHHHHHHHH------------HHHHhCCCchHH
Confidence 99999887 778877777 888888877553
No 120
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=8.1e-13 Score=120.74 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=114.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 014212 23 EAFRAKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (429)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 98 (429)
.+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445689999999999999973 557889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++|+..|+++++++|+++.++..++.++...++ +++|+..++ ++++..|..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~a~~~~~~~ 144 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL------------AFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCCC
Confidence 999999999999999999999999999998887 777877777 667666654
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.39 E-value=8.3e-13 Score=134.77 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=98.3
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 106 (429)
.|++++|++.|+++++.+|+++.++..+|.++..+|++++|++.|+++++++|+++.+++.+|.+|..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212 107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (429)
Q Consensus 107 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (429)
++++++|+++.++..++.++...++ +++|+..++ ++++.+|...
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~~ 125 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYT------------RAHQLLPEEP 125 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCH
Confidence 9999999999999999999999888 778877777 7777777653
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.39 E-value=7.5e-13 Score=123.94 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=118.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (429)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 102 (429)
.+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
..|+++++..|+++.++..++.++...++ +++|+..++ +++...|..
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------~a~~~~~~~ 273 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ--YDLAAKQLV------------RAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCcc
Confidence 99999999999999999999999988887 778877777 667766664
No 123
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.38 E-value=1e-11 Score=124.93 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=122.9
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|. ..++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 273 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 351 (537)
T 3fp2_A 273 HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351 (537)
T ss_dssp CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++..+|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 402 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYD 402 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999988887 677776666
No 124
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=9e-12 Score=98.58 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHHh
Q 014212 111 LSPN--DPDAAQKVKECEKAVKK 131 (429)
Q Consensus 111 ~~p~--~~~~~~~l~~~~~~~~~ 131 (429)
+.|+ +..+...+......+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 45556666666655554
No 125
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=1e-11 Score=123.03 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=117.4
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 78 (429)
.+..+..+..+|.++..+|++++|++.|++|+++ +|....+|.++|.+|..+|++++|+.++++++++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445677888999999999999999999999986 67788899999999999999999999999999873
Q ss_pred ------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccc
Q 014212 79 ------PRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (429)
Q Consensus 79 ------p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 150 (429)
+..+.++.++|.++...| ++++|+.+|++|++++|++++++..++.+...++.. +...+|.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----------~~~~~al 195 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-----------PPSQNAI 195 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS-----------CCCCCTH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-----------hHHHHHH
Confidence 356788999998887654 699999999999999999999999999887766541 2334445
Q ss_pred cccccccccCCCCC
Q 014212 151 SIDYQSIEVEPQYS 164 (429)
Q Consensus 151 ~~~~~~l~~~~~~~ 164 (429)
..+.++++++|...
T Consensus 196 ~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 196 DPLRQAIRLNPDNQ 209 (472)
T ss_dssp HHHHHHHHHCSSCH
T ss_pred HHHHHHhhcCCcch
Confidence 55556666666543
No 126
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=4e-13 Score=105.14 Aligned_cols=91 Identities=32% Similarity=0.389 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYR 87 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 87 (429)
+.++..+|..++..|++++|++.|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666655 555555
Q ss_pred HHHHHHHcCCHHHHHHH
Q 014212 88 RGAAYLAMGKFKEALKD 104 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~ 104 (429)
+|.++..+|++++|+..
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 55555555555444443
No 127
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=7.4e-12 Score=117.45 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=119.4
Q ss_pred ccHhHHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212 9 SSVSRAEELKALANEAFR-------AKKY-------SQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
.+|..+.+|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|...|++
T Consensus 45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 124 (308)
T 2ond_A 45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 124 (308)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 368889999999999874 4885 999999999999 7999999999999999999999999999999
Q ss_pred HHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHhHHHHHhhcCCcccccccccc
Q 014212 74 AIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA-VKKLKFEEAIAVPESERHSVADS 151 (429)
Q Consensus 74 al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~a~~~~~~~~~~~a~~ 151 (429)
+++++|.++. +|..+|.++..+|++++|...|++|++..|.+..++...+.+... .++ +++|...++
T Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~--~~~A~~~~~--------- 193 (308)
T 2ond_A 125 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE--------- 193 (308)
T ss_dssp HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC--HHHHHHHHH---------
T ss_pred HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH---------
Confidence 9999999987 999999999999999999999999999999988777655443321 233 445554444
Q ss_pred ccccccccCCCC
Q 014212 152 IDYQSIEVEPQY 163 (429)
Q Consensus 152 ~~~~~l~~~~~~ 163 (429)
++++..|..
T Consensus 194 ---~al~~~p~~ 202 (308)
T 2ond_A 194 ---LGLKKYGDI 202 (308)
T ss_dssp ---HHHHHHTTC
T ss_pred ---HHHHhCCCc
Confidence 788877753
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.36 E-value=1.6e-13 Score=130.68 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=116.4
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 014212 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (429)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 90 (429)
..+++++|++.|+++++.+|.++.++.++|.+++..|++++|+..|++++.++|.+ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (429)
+|..+|++++|+.+|+++++++|+++.+++.++.++..+++ +++|+..++ ++++++|.+..
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~ 265 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQ------------KVLQLYPNNKA 265 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCCCCHH
Confidence 99999999999999999999999999999999999999888 788887777 88888887643
No 129
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.35 E-value=3.7e-12 Score=103.73 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=97.6
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
..+|.++..++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (429)
Q Consensus 122 l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (429)
++.++..+++ +++|+..++ +++++.|.
T Consensus 83 l~~~~~~~~~--~~~A~~~~~------------~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMES--YDEAIANLQ------------RAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTC--HHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHhh--HHHHHHHHH------------HHHHHChh
Confidence 9999999887 777777777 77777665
No 130
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=2e-12 Score=118.05 Aligned_cols=133 Identities=21% Similarity=0.235 Sum_probs=116.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 77 (429)
..+|..+.++..+|.++...|++++|+.+|+++++. +|....++.++|.++..+|++++|+..+++++.+
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999999998 4667889999999999999999999999999998
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------
Q 014212 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------------------------------------- 112 (429)
Q Consensus 78 ------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------------------------------------- 112 (429)
.|....++..+|.++..+|++++|+..+++++++.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 77778899999999999999999999999999872
Q ss_pred ----------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 113 ----------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 113 ----------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|....++..++.++...|+ +++|...++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 276 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGK--LEAAHTLED 276 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 3445577778888877777 667766655
No 131
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=2.8e-12 Score=119.49 Aligned_cols=137 Identities=13% Similarity=0.061 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------ 81 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 81 (429)
+..+...|..+...|++++|++.|++++++.+. .+.++.++|.+|..+|++++|+.+|++|+.+.|..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345667788899999999999999999998532 26789999999999999999999999999998754
Q ss_pred hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccc
Q 014212 82 PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154 (429)
Q Consensus 82 ~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 154 (429)
+.++.++|.+|..+ |++++|+.+|++|+++.|.. ..++..++.++..+++ +++|+..++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------ 182 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIEASDIYS------------ 182 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--HHHHHHHHH------------
Confidence 46899999999996 99999999999999998864 4568888888888887 778887777
Q ss_pred cccccCCCCC
Q 014212 155 QSIEVEPQYS 164 (429)
Q Consensus 155 ~~l~~~~~~~ 164 (429)
+++++.|...
T Consensus 183 ~al~~~~~~~ 192 (292)
T 1qqe_A 183 KLIKSSMGNR 192 (292)
T ss_dssp HHHHTTSSCT
T ss_pred HHHHHHhcCC
Confidence 7777766653
No 132
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.9e-12 Score=129.19 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=72.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|....++..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|+++.+++.+|
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 34445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKA 128 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~l~~~~~~ 128 (429)
.++...|++++|+..|+++++..|+++. ++..++.++..
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666666555543 55555555555
No 133
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.33 E-value=2.1e-11 Score=91.59 Aligned_cols=86 Identities=31% Similarity=0.415 Sum_probs=61.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (429)
+..+..++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcC
Q 014212 91 AYLAMG 96 (429)
Q Consensus 91 ~~~~~g 96 (429)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 766543
No 134
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.33 E-value=1.7e-11 Score=112.46 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=112.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+|.++.+++.+|..+...|++++|+.+|+++++ |.++.+++++|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467789999999999999999999999999998 8889999999999999 999999999999999985 89999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212 86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (429)
Q Consensus 86 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~ 142 (429)
+.+|.+|.. .+++++|+..|+++++. +++.++..++.++.. .++ +++|+..++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~ 138 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD--FKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC--HHHHHHHHH
Confidence 999999999 99999999999999997 489999999999877 665 667776666
No 135
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.33 E-value=8.6e-12 Score=124.46 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=144.9
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
.|..+.++..+|..+...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 3888999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (429)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 169 (429)
.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++ ++++..|.....
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~~~~~~~~~~~~--- 374 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFS------------EAKRKFPEAPEV--- 374 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHH------------HHHHHSTTCSHH---
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHcccCHHH---
Confidence 999999999999999999999999999999999988877776 667766666 666666653221
Q ss_pred CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCC
Q 014212 170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS 212 (429)
Q Consensus 170 ~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~ 212 (429)
...+...+...+. ...+...+..+.+.....+.
T Consensus 375 --------~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 375 --------PNFFAEILTDKND--FDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp --------HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSS
T ss_pred --------HHHHHHHHHHCCC--HHHHHHHHHHHHHhhhccch
Confidence 2222333333332 34466777777666665544
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.32 E-value=1.1e-12 Score=114.62 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------------
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP------------- 82 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------------- 82 (429)
.....+......|++++|.+.+....+..+..+..+..+|.+++..|++++|+..|++++.+.|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3444556667788999999988888887788889999999999999999999999999999999987
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212 83 ---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (429)
Q Consensus 83 ---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~ 159 (429)
.+++++|.++..+|++++|+.+++++++++|+++.+++.++.++..+++ +++|+..++ +++++
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~------------~al~~ 151 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLY------------KAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHH
Confidence 8999999999999999999999999999999999999999999999988 778877777 77777
Q ss_pred CCCC
Q 014212 160 EPQY 163 (429)
Q Consensus 160 ~~~~ 163 (429)
+|..
T Consensus 152 ~p~~ 155 (198)
T 2fbn_A 152 NPNN 155 (198)
T ss_dssp STTC
T ss_pred CCCc
Confidence 7765
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.31 E-value=2.7e-12 Score=100.02 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=90.4
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 014212 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ 120 (429)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~ 120 (429)
++|+++.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++..|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-HhHHHHHhhcCCc
Q 014212 121 KVKECEKAV-KKLKFEEAIAVPE 142 (429)
Q Consensus 121 ~l~~~~~~~-~~~~~~~a~~~~~ 142 (429)
.++.++..+ ++ +++|+..++
T Consensus 81 ~l~~~~~~~~~~--~~~A~~~~~ 101 (112)
T 2kck_A 81 AKADALRYIEGK--EVEAEIAEA 101 (112)
T ss_dssp HHHHHHTTCSSC--SHHHHHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHH
Confidence 999988777 76 566666555
No 138
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.5e-12 Score=118.44 Aligned_cols=133 Identities=26% Similarity=0.286 Sum_probs=118.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 77 (429)
...+..+.++..+|..+...|++++|+..|++++++. |....++.++|.++...|++++|+..+++++.+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999999999999874 556788999999999999999999999999998
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------
Q 014212 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL---------------------------------------- 111 (429)
Q Consensus 78 ------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------------------------------------- 111 (429)
.|....++..+|.++..+|++++|+..|+++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6777889999999999999999999999999985
Q ss_pred ---------CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 112 ---------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 112 ---------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.|....++..++.++...|+ +++|+..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 302 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGK--FEAAETLEE 302 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 35667788889999888887 677777666
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=1.2e-11 Score=125.75 Aligned_cols=158 Identities=8% Similarity=0.003 Sum_probs=130.9
Q ss_pred cccHhHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAI 75 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al 75 (429)
..+|+...+|..++.++...++ +++|++.++++++.+|++..+|+.++.++.+++ ++++|++++.+++
T Consensus 57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l 136 (567)
T 1dce_A 57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 136 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 4578889999999999999998 999999999999999999999999999999999 7799999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhc--CCccccccccccc
Q 014212 76 EIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA--VPESERHSVADSI 152 (429)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~--~~~~~~~~~a~~~ 152 (429)
+++|.+..+|...+.+...+| .+++|++++.++++.+|++..+|..++.++..+... ..+.. ....+...++...
T Consensus 137 ~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~--~~~~~~~~~~~~~~~eel~~ 214 (567)
T 1dce_A 137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ--PDSGPQGRLPENVLLKELEL 214 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC--CCSSSCCSSCHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc--ccccccccccHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999998776210 00000 0001122333333
Q ss_pred cccccccCCCCCCCc
Q 014212 153 DYQSIEVEPQYSGAR 167 (429)
Q Consensus 153 ~~~~l~~~~~~~~~~ 167 (429)
+.+++..+|....+.
T Consensus 215 ~~~ai~~~P~~~saW 229 (567)
T 1dce_A 215 VQNAFFTDPNDQSAW 229 (567)
T ss_dssp HHHHHHHCSSCSHHH
T ss_pred HHHHHhhCCCCccHH
Confidence 447888888765543
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.8e-11 Score=95.52 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQ 120 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~ 120 (429)
++.++..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHHHHHHHHHhHHHHHhhcCC
Q 014212 121 KVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 121 ~l~~~~~~~~~~~~~~a~~~~ 141 (429)
.++.++..+++ ++.|+..+
T Consensus 83 ~~~~~~~~~~~--~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGS--VQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHC--CCCCSSSS
T ss_pred HHHHHHHHHHh--HhhhHhHH
Confidence 88888877775 34444333
No 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.28 E-value=6.5e-13 Score=131.95 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=113.3
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHH
Q 014212 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGAA 91 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 91 (429)
.+++++|+..|+++++.+|..+.++.++|.++++.|+|++|+..|++|++++|.+ ..+|+++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999999999999999999998 6899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (429)
|..+|++++|+.+|+++++++|+++.+++.++.++..+++ +++|+..++ ++++++|.+..+.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~ 388 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFE------------KVLEVNPQNKAAR 388 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTC----CHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999887 778877777 8888888776543
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.3e-11 Score=119.31 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=116.1
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
...+..+.++..+|..+...|++++|+.++++|+++.+. .+.++.++|.++..+|++++|+..+++++.+.+.
T Consensus 137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445668899999999999999999999999999997443 3568899999999999999999999999988654
Q ss_pred Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 YP------KGYYRRGAAYLAMGKFKEALKDFQQVKK-----LS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 ~~------~~~~~la~~~~~~g~~~eA~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.. .++.++|.+|..+|++++|+.+|+++++ .+ |....++..+|.++..+++ +++|+..++
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 288 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHS 288 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 33 5899999999999999999999999999 46 7788899999999998887 777877776
No 143
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=1.8e-11 Score=118.89 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=112.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CC
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DP 79 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 79 (429)
++..+..+..+|..++..|++++|+..|+++++..|++. .++..+|.++...|++++|+..+++++.+ .|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 477888999999999999999999999999999999986 58999999999999999999999999998 56
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHh
Q 014212 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~ 131 (429)
....++..+|.+|..+|++++|+..|++++++ .|....++..++.++...++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 77889999999999999999999999999998 56667789999999988887
No 144
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=114.26 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=119.1
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 78 (429)
..+..+.++..+|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.+.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999987 35567889999999999999999999999999884
Q ss_pred ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 79 ------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|....++..+|.++..+|++++|+..|++++++ .|....++..++.++...++ +++|+..++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 219 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYK 219 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 556788999999999999999999999999998 67777889999999999888 677777666
No 145
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.26 E-value=1.1e-11 Score=95.11 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (429)
.+.+|..++..|++++|+..|+++++.+|+++. +++++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357888999999999999999999999999998 99999999999999999999999999999999888754
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 014212 96 GKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~ 116 (429)
+.+.+|+..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888877664
No 146
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=2.1e-11 Score=101.31 Aligned_cols=132 Identities=15% Similarity=0.219 Sum_probs=111.4
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (429)
..+..+.++..+|..++..|++++|+.+++++++..+.. ..++..+|.++..+|++++|+..+++++.+.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 345678899999999999999999999999999876542 2578999999999999999999999999886543
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++..+|.++..+|++++|+..+++++++.+.. ..++..++.++...++ +++|+..++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 153 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 153 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 5689999999999999999999999999874322 4567788888888887 667766655
No 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.26 E-value=1e-11 Score=104.76 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 109 (429)
+..+..+|..++..|+|++|+..|++++.+ +|.+..+|+++|.+|..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 77778999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 110 ~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
+++|+++.+++.+|.++..+++ +++|+..++ ++++++|..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~------------~al~l~p~~ 130 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWK--LDEAEEDLK------------LLLRNHPAA 130 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCGGG
T ss_pred hcCCcchHHHHHHHHHHHHHhc--HHHHHHHHH------------HHHhcCCCC
Confidence 9999999999999999999988 778887777 788888764
No 148
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.26 E-value=5.5e-11 Score=89.18 Aligned_cols=84 Identities=30% Similarity=0.497 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (429)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (429)
.++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 014212 126 EKAV 129 (429)
Q Consensus 126 ~~~~ 129 (429)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.26 E-value=9.3e-12 Score=116.79 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=104.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 81 (429)
...+.++..+|.+|...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+.+|++|+.+.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 345677888888888888899999999888887432 24677888888888 88999999999988887643
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhHHHHHhhcCCccccccccccc
Q 014212 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSI 152 (429)
Q Consensus 82 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 152 (429)
..++.++|.+|..+|++++|+.+|++++++.|++. .++..++.++..+++ +++|+..++
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~A~~~~~---------- 219 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD--YVAAQKCVR---------- 219 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH----------
Confidence 56788889999999999999999999988866542 245555555555555 566666655
Q ss_pred cccccccCCCCCC
Q 014212 153 DYQSIEVEPQYSG 165 (429)
Q Consensus 153 ~~~~l~~~~~~~~ 165 (429)
+++ +.|.+..
T Consensus 220 --~al-~~p~~~~ 229 (307)
T 2ifu_A 220 --ESY-SIPGFSG 229 (307)
T ss_dssp --HHT-TSTTSTT
T ss_pred --HHh-CCCCCCC
Confidence 777 7777654
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=6.8e-11 Score=99.14 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=93.9
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
..|..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+.++++++.++|.+..++..+
T Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 121 (166)
T 1a17_A 42 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121 (166)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999988555
Q ss_pred HH--HHHHcCCHHHHHHHHHHHHHh
Q 014212 89 GA--AYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 89 a~--~~~~~g~~~eA~~~~~~al~~ 111 (429)
+. .+...|++++|+..+.++..+
T Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 122 QECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccchHHH
Confidence 54 488899999999999877654
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.6e-11 Score=119.06 Aligned_cols=109 Identities=18% Similarity=0.095 Sum_probs=90.0
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------hCHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-------------------EEYGSAIQ 69 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------------------g~~~~A~~ 69 (429)
.+|..+.++..+|..+...|++++|+..|+++++.+|+++.++.++|.+|... +.+++|+.
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 45677888999999999999999999999999999999999998888887543 33667788
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
.+++++.++|.+..++..+|.++..+|++++|+.+|+++++++|++..
T Consensus 322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 888888888888888888888888888888888888888887776543
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.24 E-value=2e-11 Score=98.29 Aligned_cols=106 Identities=23% Similarity=0.356 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
.|.+..+++.+|.++...|++++|+..|++++..+|.+..+++.+|.++..+|++++|+..++++++.+|+++.++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 124 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
.++...++ +++|+..++ ++++.+|..
T Consensus 92 ~~~~~~~~--~~~A~~~~~------------~~~~~~p~~ 117 (133)
T 2lni_A 92 AALEAMKD--YTKAMDVYQ------------KALDLDSSC 117 (133)
T ss_dssp HHHHHTTC--HHHHHHHHH------------HHHHHCGGG
T ss_pred HHHHHHhh--HHHHHHHHH------------HHHHhCCCc
Confidence 99988887 777777777 666666543
No 153
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.23 E-value=1.1e-10 Score=90.10 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=67.4
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 014212 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQ 120 (429)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~ 120 (429)
.+|+++.+++.+|.+++.+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.. ..+..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4788899999999999999999999999999999999999999999999999999999999999999887643 33344
Q ss_pred HHHHHH
Q 014212 121 KVKECE 126 (429)
Q Consensus 121 ~l~~~~ 126 (429)
.+..++
T Consensus 82 ~l~~~l 87 (100)
T 3ma5_A 82 ELQDAK 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.23 E-value=6.8e-11 Score=92.72 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
.+..++.+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|+++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhhcCCc
Q 014212 127 KAVKKLKFEEAIAVPE 142 (429)
Q Consensus 127 ~~~~~~~~~~a~~~~~ 142 (429)
...++ +++|...++
T Consensus 83 ~~~~~--~~~A~~~~~ 96 (118)
T 1elw_A 83 EFLNR--FEEAKRTYE 96 (118)
T ss_dssp HHTTC--HHHHHHHHH
T ss_pred HHHhh--HHHHHHHHH
Confidence 88887 777777666
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.22 E-value=6.2e-10 Score=103.37 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=112.7
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (429)
+|.....+...+..++..|+|++|++.++++++..+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 456677888999999999999999999999999887754 346678999999999999999999999876543
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVK---KLSPNDP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+++++|.+|..+|++++|+.+|++|+ +..|++. .++.++|.++..+++ +++|+.+++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~ 220 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN 220 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHH
Confidence 5689999999999999999999999999 5566654 578899999988887 788888877
No 156
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=9.3e-11 Score=109.41 Aligned_cols=122 Identities=11% Similarity=-0.078 Sum_probs=81.8
Q ss_pred ccHhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---hCHHHHHHHHHHHHHhCC
Q 014212 9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAH----TKL---EEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~p 79 (429)
.+|+...+|..++.++...+ ++++|++.+.+++..+|.+..+|..++.++ ... +++++++..+.++++.+|
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence 35666666666666666666 667777777777777777766776666666 444 566666777777777777
Q ss_pred CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 80 RYPKGYYRRGAAYLAMGKFK--EALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
.+..+|+..+.+...+|+++ ++++++.++++.+|.|..+|.+.+.+...++
T Consensus 142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 77777777776666666666 6666777777777776666666666654443
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.22 E-value=2.6e-10 Score=107.11 Aligned_cols=161 Identities=8% Similarity=-0.012 Sum_probs=130.3
Q ss_pred CcccHhHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHH
Q 014212 7 ENSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKA 74 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a 74 (429)
...+|+...+|...+.++...+. +++++..+.+++..+|.+..+|..++.++..+++ +++++.++.++
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 136 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 136 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 35688999999999999988776 7899999999999999999999999999999994 99999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccc
Q 014212 75 IEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID 153 (429)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~ 153 (429)
++++|.|..+|...+.+....|. ++++++++.++++.+|.|..+|.+++.+...+..............+...++....
T Consensus 137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~ 216 (331)
T 3dss_A 137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV 216 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHH
Confidence 99999999999999999999999 69999999999999999999999999998777210000000000001223333444
Q ss_pred ccccccCCCCCCCc
Q 014212 154 YQSIEVEPQYSGAR 167 (429)
Q Consensus 154 ~~~l~~~~~~~~~~ 167 (429)
.+++..+|....+.
T Consensus 217 ~~ai~~~P~d~SaW 230 (331)
T 3dss_A 217 QNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHSTTCHHHH
T ss_pred HHHHHhCCCCHHHH
Confidence 48888888876664
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.8e-11 Score=97.11 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=98.0
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
.+|.+...++.+|.+++..|++++|+..|+++++.+|++ ..+++.+|.++..+|++++|+..++++++++|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 120 QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 120 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
..++.++..+++ +++|+..++ ++++++|..
T Consensus 103 ~~~a~~~~~~~~--~~~A~~~~~------------~al~~~p~~ 132 (148)
T 2dba_A 103 YRRSQALEKLGR--LDQAVLDLQ------------RCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHTC--HHHHHHHHH------------HHHHHCSSC
T ss_pred HHHHHHHHHcCC--HHHHHHHHH------------HHHHcCCCc
Confidence 999999999888 777777776 677776654
No 159
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=2.3e-11 Score=117.52 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------h
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIEL---NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------P 82 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 82 (429)
.++.+|..++..|++++|+..|++++++ .++ .+.++.++|.++..+|++++|+.++++|+.+.+.. +
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445999999999999999999999987 233 56889999999999999999999999999985443 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++.++|.+|..+|++++|+.+|++|+++.+... .++.++|.++..+++ +++|+..++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~ 248 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 5899999999999999999999999999866443 478889999988887 777777777
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.20 E-value=1.7e-10 Score=108.40 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=111.7
Q ss_pred cccHhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHH
Q 014212 8 NSSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 84 (429)
..+|....+|...+.++...+ +++++++.+.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.|..+
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA 181 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 181 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence 458899999999999999999 49999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (429)
Q Consensus 85 ~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (429)
|+.++.++..+ +.++++++++.+++..+|++..+|+.+..+...
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999887 568999999999999999999999876655543
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.20 E-value=5.4e-11 Score=95.10 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=96.9
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
+.+|.++..+..+|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..++++++..|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 122 l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++.++...++ +++|+..++ ++++..|..
T Consensus 86 ~~~~~~~~~~--~~~A~~~~~------------~~~~~~p~~ 113 (131)
T 2vyi_A 86 MGLALSSLNK--HVEAVAYYK------------KALELDPDN 113 (131)
T ss_dssp HHHHHHHTTC--HHHHHHHHH------------HHHHHSTTC
T ss_pred HHHHHHHhCC--HHHHHHHHH------------HHHhcCccc
Confidence 9999988887 777777776 666666643
No 162
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.20 E-value=2.5e-10 Score=104.63 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCh
Q 014212 11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~ 82 (429)
+..+.+++.+|..+.. .+++++|+.+|+++++.+ ++.+++++|.++.. .+++++|+..|+++++. .++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence 4566889999999999 999999999999999885 89999999999999 99999999999999998 489
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212 83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (429)
Q Consensus 83 ~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~ 142 (429)
.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..++.++.. .++ +++|+..++
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~ 174 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD--LKKALASYD 174 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence 999999999999 999999999999999976 68889999988876 555 666666665
No 163
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.19 E-value=3.3e-11 Score=100.06 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=83.4
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212 59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF----------KEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (429)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (429)
.+.+.|++|+..++++++++|+++++|+++|.++..++++ ++|+..|++|++++|++.++++++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred HHh---------HHHHHhhcCCccccccccccccccccccCCCC
Q 014212 129 VKK---------LKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 129 ~~~---------~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++. .++++|+.+++ ++++++|++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~------------kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ------------QAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH------------HHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHH------------HHHHhCCCC
Confidence 873 24777777666 999999975
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.19 E-value=1.3e-10 Score=108.03 Aligned_cols=129 Identities=12% Similarity=0.008 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCCCCh
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI---EIDPRYP 82 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~ 82 (429)
.....++.+|..+...|++++|+..|+++++..+.. ..++.++|.+|..+|++++|+.+|++|+ +..|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 345667789999999999999999999999875543 6689999999999999999999999999 5556543
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhHHHHHh-hcCCc
Q 014212 83 ----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEA-IAVPE 142 (429)
Q Consensus 83 ----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~a-~~~~~ 142 (429)
.+++++|.+|..+|++++|+.++++++++.++ ...++..+|.++..+++ +++| ..+++
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~ 261 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 68999999999999999999999999998643 26788899999888887 5566 44344
No 165
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=1.6e-11 Score=108.74 Aligned_cols=124 Identities=17% Similarity=0.041 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----EYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
.++.+++.+|..+...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+++.+ +.++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 56889999999999999999999999999875 689999999999998 7 89999999999965 579999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212 88 RGAAYLA----MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (429)
Q Consensus 88 la~~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~ 142 (429)
+|.+|.. .+++++|+.+|+++.+..| +++.+...++.++.. .++ +++|+.+++
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d--~~~A~~~~~ 153 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED--DVKASEYFK 153 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC--HHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence 9999998 8999999999999999988 458999999999866 333 556666655
No 166
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=4.4e-11 Score=115.39 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=116.0
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
...+..+.++..+|.++...|++++|+.++++|+++.+. .+.++.++|.++..+|++++|+..|++|+.+.+.
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999999999987443 2567889999999999999999999999987432
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 ------YPKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 ------~~~~~~~la~~~~~~g~~~eA~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...++.++|.+|..+|++++|+.+|+++++ .+|....++..+|.++...++ +++|+..++
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 285 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIE 285 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 346889999999999999999999999999 778888899999999998888 777777776
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.19 E-value=6.9e-11 Score=94.98 Aligned_cols=101 Identities=23% Similarity=0.180 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKV 122 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 122 (429)
.+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++..+|++++|+..|+++++..|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3568899999999999999999999999999998 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 123 ~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
+.++..+++ +++|+..++ +++...|..
T Consensus 83 a~~~~~~g~--~~~A~~~~~------------~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGK--NTEAQQTLQ------------QVATQYPGS 109 (129)
T ss_dssp HHHHHHTTC--HHHHHHHHH------------HHHHHSTTS
T ss_pred HHHHHHcCC--HHHHHHHHH------------HHHHHCCCC
Confidence 999998887 777777776 677666653
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=8.4e-10 Score=112.14 Aligned_cols=145 Identities=10% Similarity=0.059 Sum_probs=121.5
Q ss_pred cHhHHHHHHH---HHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------HHHHHHHHHHHH
Q 014212 10 SVSRAEELKA---LANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAI 75 (429)
Q Consensus 10 ~p~~~~~~~~---~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al 75 (429)
....+..+.. ......+.|++ ++|++.+.++++.+|++..+|+.++.++..+++ +++|+..+.+++
T Consensus 21 ~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 21 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 4445544443 33344456665 578999999999999999999999999999998 999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-hHHHHHhhcCCccccccccccc
Q 014212 76 EIDPRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK-KLKFEEAIAVPESERHSVADSI 152 (429)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~a~~~ 152 (429)
+.+|++..+|+..+.++..++ ++++|++++.++++++|.+..+|...+.+...++ . +++++.++.
T Consensus 101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~--~~~el~~~~---------- 168 (567)
T 1dce_A 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTD---------- 168 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHH----------
T ss_pred HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC--hHHHHHHHH----------
Confidence 999999999999999999999 7799999999999999999999999999988877 4 455555555
Q ss_pred cccccccCCCCCCCcc
Q 014212 153 DYQSIEVEPQYSGARI 168 (429)
Q Consensus 153 ~~~~l~~~~~~~~~~~ 168 (429)
++++.+|.+..+..
T Consensus 169 --~~I~~~p~n~saW~ 182 (567)
T 1dce_A 169 --SLITRNFSNYSSWH 182 (567)
T ss_dssp --TTTTTTCCCHHHHH
T ss_pred --HHHHHCCCCccHHH
Confidence 77777777665543
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=1.7e-10 Score=91.23 Aligned_cols=98 Identities=29% Similarity=0.447 Sum_probs=88.3
Q ss_pred hCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 43 LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 43 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
.+|.. ..+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..++++++..|+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCc
Q 014212 122 VKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 122 l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++.++...++ +++|+..++
T Consensus 83 la~~~~~~~~--~~~A~~~~~ 101 (125)
T 1na0_A 83 LGNAYYKQGD--YDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhcC--HHHHHHHHH
Confidence 9999988887 677777666
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.17 E-value=3.6e-11 Score=111.79 Aligned_cols=128 Identities=11% Similarity=-0.015 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CC
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PR 80 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~ 80 (429)
...+..+|..+...+++++|+.+|+++++..+.. ..++.++|.+|..+|++++|+.+|+++++.. +.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 3345568999999999999999999999864432 4478999999999999999999999999532 22
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...+++++|.+|..+|++++|+.++++++++.+.. ..++..+|.++..+++. +++|+..++
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~ 261 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHH
Confidence 34588999999999999999999999999987544 77899999999888841 355555554
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.17 E-value=6.6e-11 Score=102.87 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCC--
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPR-- 80 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-- 80 (429)
..+.++..+|..+...|++++|+..++++++ ..|....++.++|.++..+|++++|+..+++++.+ .++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 6788999999999999999999999999998 44556788999999999999999999999999998 443
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~----~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...++.++|.++..+|++++|+..+++++++.+ .++ .++..++.++...++ +++|...++
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 171 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence 356799999999999999999999999998743 222 235677777777776 566665555
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.16 E-value=2.2e-10 Score=90.91 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=75.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (429)
+|..+.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..+++++...|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987754333
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=6.8e-11 Score=109.46 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (429)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (429)
|.++..+..+|.+++..|++++|+..|++++..+|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
++..+++ +++|+..++ ++++++|+.
T Consensus 81 ~~~~~g~--~~~A~~~~~------------~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMES--YDEAIANLQ------------RAYSLAKEQ 105 (281)
T ss_dssp HHHHTTC--HHHHHHHHH------------HHHHHHHHT
T ss_pred HHHHcCC--HHHHHHHHH------------HHHHhCccc
Confidence 9999887 778877777 677777654
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.15 E-value=3.3e-11 Score=120.22 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=97.7
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+|..+.++..+|.++..+|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++..++..+
T Consensus 35 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 114 (477)
T 1wao_1 35 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114 (477)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--HHHcCCHHHHHHHHH-----------HHHHhCCCCHH
Q 014212 89 GAA--YLAMGKFKEALKDFQ-----------QVKKLSPNDPD 117 (429)
Q Consensus 89 a~~--~~~~g~~~eA~~~~~-----------~al~~~p~~~~ 117 (429)
+.+ +..+|++++|++.++ ++++++|+...
T Consensus 115 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 115 QECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 998 889999999999999 88888876533
No 175
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.15 E-value=1e-10 Score=112.86 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=116.1
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (429)
..+..+.++..+|..+...|++++|+..+++++++.|... .++.++|.++..+|++++|+..+++++.+.|..
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 4567778999999999999999999999999998865543 389999999999999999999999999987765
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++..+|.++..+|++++|+..|++++++.+.. ..++..++.++...|+ +++|+..++
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 331 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 331 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 7789999999999999999999999999986654 5678889999988887 777777766
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.13 E-value=3e-09 Score=100.38 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=121.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.++-..++-.........+..++|++.+.+++.++|++..+|+.++.++..++ .+++++..+.+++..+|++..+|+.+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34445555555555555566689999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 89 GAAYLAM-G-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 89 a~~~~~~-g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
+.++..+ + +++++++++.++++.+|.+..+|...+.+...++. ++. .......++.....+.++.+|.+..+
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~--~~~----~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST--LGR----ISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH--TTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--ccc----cchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 9999998 8 89999999999999999999999999999988876 220 00000112333334778888877665
Q ss_pred c
Q 014212 167 R 167 (429)
Q Consensus 167 ~ 167 (429)
.
T Consensus 204 W 204 (349)
T 3q7a_A 204 W 204 (349)
T ss_dssp H
T ss_pred H
Confidence 3
No 177
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=1.7e-10 Score=88.99 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=73.0
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY 86 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 86 (429)
.+|.++.+++.+|.+++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 468889999999999999999999999999999999999999999999999999999999999999998764 334444
Q ss_pred HHHHHHHH
Q 014212 87 RRGAAYLA 94 (429)
Q Consensus 87 ~la~~~~~ 94 (429)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 178
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.12 E-value=4.1e-10 Score=113.73 Aligned_cols=178 Identities=12% Similarity=0.017 Sum_probs=139.3
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
..|.....+..+|..+...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|...|++|++..|.....+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 3678899999999999999999999999999999999986 699999999999999999999999999999988888877
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212 88 RGAA-YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 88 la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
.+.+ +...|++++|...|+++++..|+++.++..++.++...|+ .++|...++ +++...|....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~--~~~Ar~~~~------------~al~~~~~~~~- 460 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE------------RVLTSGSLPPE- 460 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC--HHHHHHHHH------------HHHHSCCSCGG-
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC--HhhHHHHHH------------HHHhccCCCHH-
Confidence 7765 4569999999999999999999999999999988877666 666666666 66655443211
Q ss_pred cccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhh
Q 014212 167 RIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA 209 (429)
Q Consensus 167 ~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~ 209 (429)
.........+......+ +.+.+..+...+.+.+..
T Consensus 461 ------~~~~lw~~~~~~e~~~G--~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 ------KSGEIWARFLAFESNIG--DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp ------GCHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHTHH
T ss_pred ------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCch
Confidence 01112222233222222 345577777777777764
No 179
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=6.1e-10 Score=103.86 Aligned_cols=124 Identities=9% Similarity=0.061 Sum_probs=116.6
Q ss_pred cccHhHHHHHHHHHHHH----HHh---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHhC
Q 014212 8 NSSVSRAEELKALANEA----FRA---KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--SAIQDASKAIEID 78 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~ 78 (429)
..+|+...+|..++.++ ... ++++++++.+.++++.+|.+..+|..++.++..++.++ ++++.+.++++.+
T Consensus 97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 45788889999999999 666 79999999999999999999999999999999999999 9999999999999
Q ss_pred CCChHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 79 PRYPKGYYRRGAAYLAMGK------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 79 p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
|.|..+|..++.+....++ ++++++++.+++..+|++..+|..++.++...++
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999998 9999999999999999999999999998877664
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=8.7e-11 Score=110.12 Aligned_cols=129 Identities=24% Similarity=0.192 Sum_probs=108.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---- 80 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---- 80 (429)
...+..+...|..|...|++++|+..|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3344556666889999999999999999999986542 568899999999999999999999999998543
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...++.++|.+|.. |++++|+.+|++|+++.|.. ..++..++.++..+++ +++|+..++
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 179 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQ 179 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 24688999999999 99999999999999998754 4678888888888887 778877777
No 181
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=1e-10 Score=109.11 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=113.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (429)
.+..+.++..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 46667789999999999999999999999999875542 3489999999999999999999999999987665
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++..+|.++..+|++++|+..+++++++.+.. ..++..++.++...|+ +++|...++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 327 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 6789999999999999999999999999986543 4478889999988887 677777666
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.11 E-value=1.4e-10 Score=92.80 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 014212 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-------PDA 118 (429)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~ 118 (429)
..+..+..+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..+++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999887 888
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+..++.++...++ +++|+..++
T Consensus 82 ~~~la~~~~~~~~--~~~A~~~~~ 103 (131)
T 1elr_A 82 YARIGNSYFKEEK--YKDAIHFYN 103 (131)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999988887 777777766
No 183
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=111.34 Aligned_cols=130 Identities=20% Similarity=0.321 Sum_probs=113.5
Q ss_pred HhHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhCH
Q 014212 11 VSRAEELKALANEAFRAKK--------------------YSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEY 64 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~ 64 (429)
+..+.++..+|..+...|+ +++|+..|++++++ .|....++.++|.++..+|++
T Consensus 124 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 203 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 203 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH
Confidence 4457799999999999999 99999999999987 344567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhH
Q 014212 65 GSAIQDASKAIEIDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKL 132 (429)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~ 132 (429)
++|+..+++++.+.+.... ++..+|.++..+|++++|+..+++++++.|.. ..++..++.++...++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~- 282 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD- 282 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-
Confidence 9999999999998766544 89999999999999999999999999988766 6678888888888777
Q ss_pred HHHHhhcCCc
Q 014212 133 KFEEAIAVPE 142 (429)
Q Consensus 133 ~~~~a~~~~~ 142 (429)
+++|+..++
T Consensus 283 -~~~A~~~~~ 291 (406)
T 3sf4_A 283 -YEKAIDYHL 291 (406)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 677777766
No 184
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=6.3e-11 Score=114.97 Aligned_cols=131 Identities=14% Similarity=0.217 Sum_probs=113.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (429)
.+..+.++..+|..+...|++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..+++++.+.+..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 46667899999999999999999999999999987653 3388999999999999999999999999987754
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..++..+|.++..+|++++|+.+|++++++.++. ..++..++.++...|+ +++|+..++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 367 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG--HERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 6789999999999999999999999999986543 4578888888888887 667766666
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=2.7e-10 Score=107.52 Aligned_cols=123 Identities=8% Similarity=-0.014 Sum_probs=115.9
Q ss_pred cccHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h-CHHHHHHHHHHHHHhCCCChHH
Q 014212 8 NSSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-E-EYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~ 84 (429)
..+|+...+|..++.++...+ .++++++.++++++.+|++..+|..++.++..+ + +++++++.+.++++.+|.|..+
T Consensus 82 ~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A 161 (349)
T 3q7a_A 82 RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT 161 (349)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence 457888999999999999999 599999999999999999999999999999998 7 8999999999999999999999
Q ss_pred HHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 85 YYRRGAAYLAMGKFK--------EALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 85 ~~~la~~~~~~g~~~--------eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
|...+.+....|+++ ++++++.++++.+|.|..+|...+.+...++
T Consensus 162 W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 162 WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 999999999999888 9999999999999999999999998876654
No 186
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=1.1e-09 Score=101.61 Aligned_cols=183 Identities=11% Similarity=0.072 Sum_probs=132.0
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV------YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (429)
.......+...+..++..|++++|+..++++++..+..+. .+..+|.++...+++++|+.++++++.+.+..
T Consensus 71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 3555666777899999999999999999999998877654 33458999999999999999999999975543
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccc
Q 014212 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (429)
Q Consensus 82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 150 (429)
..++.++|.+|..+|++++|+.+|+++++.. +....++.++|.++..+++ +++|+.+++
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~-------- 220 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN-------- 220 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHH--------
Confidence 3379999999999999999999999999632 2224578899999988887 788888777
Q ss_pred cccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCC
Q 014212 151 SIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS 212 (429)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~ 212 (429)
+++++.+....... .......+...+...+. ..+.+...+.++..++....+
T Consensus 221 ----~al~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 221 ----KAIEISCRINSMAL-----IGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp ----HHHHHHHHTTBCTT-----HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHcCcHHH-----HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCC
Confidence 66665443321111 11122222223332221 124577888888888876543
No 187
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.08 E-value=7.8e-10 Score=103.10 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCC
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY 81 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~ 81 (429)
.....+...|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++.+ .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 356788999999999999999999999999999998 467889999999999999999999999987 4456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHh
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKK 131 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~ 131 (429)
..++..+|.++..+|++++|+..+++++++.|... .++..++.++...++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 78899999999999999999999999999876542 377888888877776
No 188
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=1.5e-10 Score=105.94 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAY 92 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 92 (429)
.....+|..+...|+|++|.+.|..++...|.+. +.+.+|.++++.+++++|+..|+++....+.. ..+++.+|.++
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 4455567777777777777777777777777666 77777777777777777777777665542111 34677777777
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 93 LAMGKFKEALKDFQQVKKLS--PN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+|++++|+..|++++.-. |. .+++.+.++.++..+|+ .++|...++
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~ 232 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLE 232 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 77777777777777776433 43 45577777777777776 556665555
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.4e-09 Score=99.54 Aligned_cols=115 Identities=14% Similarity=0.051 Sum_probs=99.3
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CC-C
Q 014212 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID--PR-Y 81 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~ 81 (429)
....|... +.+.+|..+++.++|++|+.+|+++.+..+.. ..+++++|.++..+|++++|+.+|++++.-. |. .
T Consensus 129 ~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~ 207 (282)
T 4f3v_A 129 PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA 207 (282)
T ss_dssp CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence 34567778 99999999999999999999999887643221 4589999999999999999999999998654 55 6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (429)
+++++++|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 689999999999999999999999999999999 77765553
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=1.6e-10 Score=109.94 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-H
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-L 93 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 93 (429)
.++.++|.++.+.|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999884 4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
..+..++|...|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 566778899999999999998764
No 191
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=9e-10 Score=97.32 Aligned_cols=127 Identities=16% Similarity=0.038 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCC--CC
Q 014212 12 SRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDP--RY 81 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~ 81 (429)
..+.+++.+|..|.. + ++++|+.+|+++. ++.++.+++++|.+|.. .+++++|+.+|+++.+..| .+
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 457889999999998 7 9999999999996 46789999999999998 8899999999999999887 35
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----hHHHHHhhcCCc
Q 014212 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK----KLKFEEAIAVPE 142 (429)
Q Consensus 82 ~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~~~a~~~~~ 142 (429)
+.++++||.+|.. .+++++|+.+|+++.++ |.++.+.+.++.++..-. ..++++|+.+++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 9999999999999 88999999999999998 778889999999875421 112455555544
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.03 E-value=1.4e-09 Score=104.66 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=91.8
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (429)
.+|..+.++.++|.++++.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++|++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 014212 89 GAAYLAMGKFKEALKD 104 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~ 104 (429)
+.++..++++++|...
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 193
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.02 E-value=4.2e-10 Score=108.45 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=95.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-----hC
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIE-----ID 78 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~ 78 (429)
.+..+.++..+|.++...|++++|+++|++++++.+. ...++.++|.++..+|++++|+.++++++. .+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 4567889999999999999999999999999986431 356789999999999999999999999999 77
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
|..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999998653
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.00 E-value=3.5e-09 Score=80.79 Aligned_cols=70 Identities=21% Similarity=0.427 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 57899999999999999999999999999999 99999999999999999999999999999999988743
No 195
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.99 E-value=1.2e-09 Score=110.18 Aligned_cols=140 Identities=14% Similarity=0.047 Sum_probs=117.9
Q ss_pred cHhHHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFR-------AKKYS-------QAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
.|..+..|+.+|..+.. .|+++ +|+..|++|++ ..|++..+|..+|.++...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56778999999999987 79987 99999999997 89999999999999999999999999999999
Q ss_pred HHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHhHHHHHhhcCCccccccccccc
Q 014212 75 IEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK-AVKKLKFEEAIAVPESERHSVADSI 152 (429)
Q Consensus 75 l~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~ 152 (429)
++++|.++ .+|..+|.++..+|++++|...|++|++..|.....+...+.+.. ..++ .++|...++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~--~~~A~~~~e---------- 415 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE---------- 415 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC--HHHHHHHHH----------
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC--hhHHHHHHH----------
Confidence 99999986 699999999999999999999999999998887776655444321 2333 455555555
Q ss_pred cccccccCCCC
Q 014212 153 DYQSIEVEPQY 163 (429)
Q Consensus 153 ~~~~l~~~~~~ 163 (429)
++++..|+.
T Consensus 416 --~al~~~p~~ 424 (530)
T 2ooe_A 416 --LGLKKYGDI 424 (530)
T ss_dssp --HHHHHHTTC
T ss_pred --HHHHHCCCC
Confidence 777777754
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=6.9e-09 Score=85.11 Aligned_cols=102 Identities=11% Similarity=0.093 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 014212 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFKEALK 103 (429)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 103 (429)
....+.+.|.+.++.+|.+..+.+++|.++.+.. +.++++..++.+++.+ | ++.+++|++|..|+++|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456778889988989999999999999999988 7789999999999998 7 578999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 104 DFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
+++++++.+|++..+......+...+.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999888877665554
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.97 E-value=2.8e-09 Score=83.95 Aligned_cols=89 Identities=7% Similarity=-0.018 Sum_probs=76.8
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGY 85 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 85 (429)
..+|..+.+++.+|..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|++++++.|. +..+.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV 92 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999885 34444
Q ss_pred HHHHHHHHHcC
Q 014212 86 YRRGAAYLAMG 96 (429)
Q Consensus 86 ~~la~~~~~~g 96 (429)
..+...+..++
T Consensus 93 ~~l~~~l~~l~ 103 (115)
T 2kat_A 93 KELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55554444433
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=2.4e-09 Score=106.52 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CC--
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIEL-----NS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PR-- 80 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-- 80 (429)
.....+..+..+|+|++|+..|++++++ .| +.+..+.++|.+|..+|+|++|+..+++++++. |+
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3445666788899999999999999985 33 346778999999999999999999999999762 44
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDA---AQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 81 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~---~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+..+.+||.+|..+|++++|+..|++|+++ .|++|.. ...++.++..+++ +++|...+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~--~~~ae~~~~ 459 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM--FRQNEFMYH 459 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4567999999999999999999999999985 5777764 4566666666665 555555544
No 199
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=4.3e-09 Score=86.97 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=90.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---- 80 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---- 80 (429)
...+.++..+|..+...|++++|+.+++++++..+.. ..++.++|.++...|++++|+..+++++.+.+.
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 3445789999999999999999999999999876543 668899999999999999999999999987432
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 81 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
...++..+|.++..+|++++|+..+++++++...
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2567899999999999999999999999987654
No 200
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.93 E-value=3.5e-09 Score=91.76 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=93.7
Q ss_pred HHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcC
Q 014212 24 AFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMG 96 (429)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g 96 (429)
++..|++++|.+.++.... +| ..+.++..+|.++...|++++|+..+++++.+ .|....++.++|.++..+|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4678999999996655544 45 67889999999999999999999999999984 4456778999999999999
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 97 KFKEALKDFQQVKKL---SPND----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 97 ~~~eA~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
++++|+..+++++++ .+++ ..++..++.++...++ +++|...++
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 131 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYE 131 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 999999999999998 4533 4568888888888887 777777766
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.85 E-value=2.5e-08 Score=75.49 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 44 NSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.++...|+|++|+..++++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 57888888888888876655 688888888888888888888888888888888888888888888888888544
No 202
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=1.8e-08 Score=96.49 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------- 78 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 78 (429)
.+.++..+|..+...|++++|+..+++++++.|.. ..++.++|.++...|++++|+..+++++.+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 44567778888888888888888888888765432 2346778888888888888888888888764
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|....++.++|.++..+|++++|...+++++...+.. ..++..++.++...|+ +++|...++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 198 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQLN 198 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 2234567778888888888888888888888877642 3456677777777666 566665555
No 203
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.83 E-value=1.2e-08 Score=97.75 Aligned_cols=129 Identities=14% Similarity=-0.018 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---- 82 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 82 (429)
-.+..+..+|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|+..+++++.+.|...
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3467788999999999999999999999999887653 2678899999999999999999999999866432
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--------NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 83 --~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.++..+|.++..+|++++|+..+++++++.+ ....++..++.++...|+ +++|...++
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 159 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 3478899999999999999999999999752 334566778888877776 677766666
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.80 E-value=8.7e-08 Score=74.19 Aligned_cols=81 Identities=15% Similarity=-0.013 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
++.-++.+|..+++.++|+.|+.+|++|++.. +..+.++..+|.++.++|++++|+..++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556677777777777777777777777653 23466778888888888888888888888888888888877
Q ss_pred HHHHHHHH
Q 014212 120 QKVKECEK 127 (429)
Q Consensus 120 ~~l~~~~~ 127 (429)
.+++....
T Consensus 84 ~n~~~~~~ 91 (104)
T 2v5f_A 84 GNLKYFEY 91 (104)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 77764433
No 205
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.80 E-value=2.4e-08 Score=99.68 Aligned_cols=109 Identities=20% Similarity=0.087 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHHH
Q 014212 14 AEELKALANEAFRA-----KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 14 ~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+.+++.+|..+... +++++|+.+|+++++. .++.+++++|.+|...| ++++|+.+|+++++. .++.++
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 366 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQ 366 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHH
Confidence 34445555555554 5555555555555543 34455555665555533 555666666666554 455566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212 86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (429)
Q Consensus 86 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (429)
+++|.+|.. .+++++|+.+|+++.+. .++.++..++.++..
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 666666665 55666666666666554 245555555555543
No 206
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.79 E-value=8.3e-09 Score=90.80 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=55.5
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCC--------CcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGS--------FSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~--------~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++.+++|+||++..+.++++..... ..+.++++||++|+|+ .+.+++.+|..++ ..+++++||||..
T Consensus 27 ki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~ 101 (208)
T 1su1_A 27 KLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVA----HKVIAVRGNCDSE 101 (208)
T ss_dssp EEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTG----GGEEECCCTTCCH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcC----CceEEEECCCchH
Confidence 5899999999999998888765322 2356999999999998 4688999988774 3689999999986
Q ss_pred c
Q 014212 295 S 295 (429)
Q Consensus 295 ~ 295 (429)
.
T Consensus 102 ~ 102 (208)
T 1su1_A 102 V 102 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 207
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.78 E-value=2.7e-08 Score=98.34 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 15 EELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 15 ~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
.+++.+|..|...| ++++|+..|+++.+..|..+..++++|.+|... +++++|+.+|+++. |.++.++++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 48899999999999 999999999999999999999999999999766 79999999999998 899999999
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---HHHHHhhcCCc
Q 014212 88 RGAA-Y--LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPE 142 (429)
Q Consensus 88 la~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~a~~~~~ 142 (429)
+|.+ + ...+++++|+.+|+++.+. .++.+.+.++.++. .|. .++++|+.+++
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9998 4 5789999999999999975 58999999999886 441 12566666655
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.77 E-value=4.4e-08 Score=95.80 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=84.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCC---ChHH
Q 014212 21 ANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPR---YPKG 84 (429)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~ 84 (429)
+......|+|++|+..|++++++ .|++ +..+.++|.+|..+|+|++|+.++++++++ -|+ -+..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 33334568899999999999985 3444 567899999999999999999999999976 234 4567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK 121 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~ 121 (429)
+.+||.+|..+|++++|+..|++|+++ .|++|.....
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999999999986 5888876543
No 209
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.75 E-value=1e-07 Score=95.09 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=100.1
Q ss_pred cHhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC
Q 014212 10 SVSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~ 81 (429)
.+.++.+++.+|..|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 34567888889999888 88999999999998875 678888999999988 88999999999998875 57
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (429)
Q Consensus 82 ~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~ 142 (429)
+.+++.+|.+|.. .+++++|+..|+++.+. .++.+...++.++.. .++ +++|+..++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d--~~~A~~~~~ 175 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD--YVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence 8888899998888 78899999999988775 578888888888764 223 445554444
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.73 E-value=5.6e-08 Score=95.15 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CC
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PR 80 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 80 (429)
+.........+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+..+++++.+. |+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 445556667788999999999999999975 3444 5678999999999999999999999999762 44
Q ss_pred C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 014212 81 Y---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK 121 (429)
Q Consensus 81 ~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~ 121 (429)
+ +..+++||.+|..+|++++|+..|++|+++ .|++|.....
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4 457999999999999999999999999986 5888766544
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.73 E-value=1.5e-07 Score=76.97 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=57.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA- 94 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 94 (429)
+|..|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+|++|.+. .++.++++||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 556666666666666666666654 556666666666666 56666666666666655 556666666666666
Q ss_pred ---cCCHHHHHHHHHHHHHh
Q 014212 95 ---MGKFKEALKDFQQVKKL 111 (429)
Q Consensus 95 ---~g~~~eA~~~~~~al~~ 111 (429)
.+++++|+.+|++|.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 66666666666666665
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.72 E-value=1.1e-07 Score=73.50 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
+.-.+.+|..++..++|..|+..|++|++.. +..+.++..+|.+++++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5678899999999999999999999999863 345788999999999999999999999999999999999988
Q ss_pred HHH
Q 014212 87 RRG 89 (429)
Q Consensus 87 ~la 89 (429)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 887
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=9.5e-08 Score=78.11 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=91.8
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 014212 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEAL 102 (429)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~ 102 (429)
.+++++|+.+|+++.+.....+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35789999999999998755554 999999999999999999999987 789999999999999 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212 103 KDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (429)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~ 142 (429)
.+|++|.+. .++.+...++.++.. .++ +++|+.+++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~~~~ 121 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKN--EKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC--HHHHHHHHH
Confidence 999999987 789999999999876 444 566666555
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.67 E-value=6.4e-08 Score=96.17 Aligned_cols=107 Identities=10% Similarity=0.056 Sum_probs=93.4
Q ss_pred CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
....+|..+..+.++|.+|..+|+|++|+.++++++++ .|+.+..+.++|.+|..+|++++|+..|++|+++
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999975 3445677999999999999999999999999976
Q ss_pred -----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 78 -----DPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 78 -----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
-|++ .+....++.++.+++++++|...|+++.+-.
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 4567889999999999999999999986543
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=6.7e-08 Score=73.13 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=68.1
Q ss_pred cHhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
+|+++..+..+|..++..++ .++|...++++++++|+++.++..+|..+++.|+|++|+..|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57789999999999987766 79999999999999999999999999999999999999999999999999843
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.66 E-value=1.9e-07 Score=88.03 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-------HHHH-HHH--HHHHhCC
Q 014212 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-------SAIQ-DAS--KAIEIDP 79 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-------~A~~-~~~--~al~~~p 79 (429)
.+..++..|..++..++ +.+|+.+|++|++++|+++.++-.++.+|.....+. +++. .++ .++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 45667778888887654 578999999999999999999999988886432211 1111 222 1235678
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~ 159 (429)
.++.++..+|.++...|++++|+..+++|++++|+ ..++..+|.++...|+ +++|++.++ +++.+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~------------~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYL------------TAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhc
Confidence 89999999999999999999999999999999975 6778889999988888 778887777 78888
Q ss_pred CCCC
Q 014212 160 EPQY 163 (429)
Q Consensus 160 ~~~~ 163 (429)
+|..
T Consensus 340 ~P~~ 343 (372)
T 3ly7_A 340 RPGA 343 (372)
T ss_dssp SCSH
T ss_pred CCCc
Confidence 8764
No 217
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.63 E-value=1.1e-07 Score=102.65 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=97.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---------- 80 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------- 80 (429)
.+.+.+|+.+|.++.+.|++++|+..|.+| +++..|..+|.++.++|++++|+++|..|.+..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 456789999999999999999999999886 88999999999999999999999999888765532
Q ss_pred -----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212 81 -----------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (429)
Q Consensus 81 -----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 143 (429)
+...+..+|..+...|+|++|..+|.+| ..+..++.++..+++ +++|++.+.+
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--~q~AIEaarK 1246 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE--YQAAVDGARK 1246 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC--HHHHHHHHHH
Confidence 2345677888888888888888888886 357778888888877 7788777764
Q ss_pred c
Q 014212 144 E 144 (429)
Q Consensus 144 ~ 144 (429)
.
T Consensus 1247 A 1247 (1630)
T 1xi4_A 1247 A 1247 (1630)
T ss_pred h
Confidence 3
No 218
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.55 E-value=4.4e-08 Score=83.84 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=60.8
Q ss_pred ceEEEccCCC--CHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhc
Q 014212 223 HFTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300 (429)
Q Consensus 223 ~~~v~GDihG--~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~ 300 (429)
++.+++|+|| +...+.++++... ...+.++++||++|+ +++.+|..+. ..+++++||||...
T Consensus 24 ri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~----~~v~~V~GNhD~~~----- 87 (178)
T 2kkn_A 24 RFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFS----KEFYGVHGNMDYPD----- 87 (178)
T ss_dssp EEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHT----SSEEECCCSSSCGG-----
T ss_pred EEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcC----CCEEEEECCCCcHH-----
Confidence 5899999997 6666777777643 234569999999984 7888887763 35899999999753
Q ss_pred cchhhhhcccchHHHHHHHHHhccCccccee---cCeEEEEecCc
Q 014212 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 342 (429)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi 342 (429)
|+..+|....+ +.+++++||..
T Consensus 88 --------------------~~~~lp~~~~~~~~g~~i~l~HG~~ 112 (178)
T 2kkn_A 88 --------------------VKEHLPFSKVLLVEGVTIGMCHGWG 112 (178)
T ss_dssp --------------------GGGTSCSCEEEEETTEEEEECCSCC
T ss_pred --------------------HHhhCCcceEEEECCEEEEEECCCC
Confidence 23346654433 35899999864
No 219
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.53 E-value=3.1e-07 Score=90.77 Aligned_cols=123 Identities=13% Similarity=0.074 Sum_probs=99.8
Q ss_pred cHhHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHhhCHHHHHHHHHHHHHhCCCCh
Q 014212 10 SVSRAEELKALANEAFRA----KKYSQAIDLYSQAIELNSQNAVYYANRAFA-H--TKLEEYGSAIQDASKAIEIDPRYP 82 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~ 82 (429)
.+..+..++.+|..|... +++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|+++.+. .++
T Consensus 209 g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~ 283 (452)
T 3e4b_A 209 GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQP 283 (452)
T ss_dssp TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 344555668889888765 79999999999987 8999999999998 4 4678999999999999865 589
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---HHHHHhhcCCc
Q 014212 83 KGYYRRGAAYLAMG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPE 142 (429)
Q Consensus 83 ~~~~~la~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~a~~~~~ 142 (429)
.+++++|.+|. .| ++++|+.+|+++. |.++.+.+.++.++.. |. .++++|+.+++
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-GYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-TTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHH
Confidence 99999999998 55 9999999999999 8999999999988755 21 12455555554
No 220
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.52 E-value=2.3e-07 Score=80.23 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=50.0
Q ss_pred CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
.++.+++|+||+...+.++++..... ..+.++++||++|. +++..|.++ +..+++++||||....
T Consensus 26 m~i~~iSD~Hg~~~~l~~~l~~~~~~-~~D~ii~~GDl~~~-----~~~~~l~~l----~~~~~~V~GNhD~~~~ 90 (190)
T 1s3l_A 26 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGERC 90 (190)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHHHHS-CCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCHH
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCH-----HHHHHHHhc----CCCEEEEeCCCcchHH
Confidence 45899999999999999988876422 24569999999984 566666443 3579999999998654
No 221
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.48 E-value=1.2e-06 Score=81.03 Aligned_cols=126 Identities=9% Similarity=-0.019 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYR 87 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~ 87 (429)
..++..+|.++...|++++|++.+.+.+..+| .+..++..++.++.++|+.+.|.+.+++..+.+|+ +-.....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 45567999999999999999999999999887 78999999999999999999999999999999883 2334444
Q ss_pred H--HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 88 R--GAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 88 l--a~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
+ |.+....| ++.+|...|+++....|+.......+. ++..+|+ +++|....+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~--~~eAe~~L~ 235 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN--IAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC--HHHHHHHHH
Confidence 5 44466666 999999999999888887333233333 6777776 666655554
No 222
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.46 E-value=1.2e-06 Score=94.78 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHhhCH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------------------------NAVYYANRAFAHTKLEEY 64 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------------------~~~~~~~lg~~~~~~g~~ 64 (429)
+++..+...|..+.+.|+|++|+++|.+|.+..++ +...+..+|..++..|+|
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 56778899999999999999999999887765433 234567899999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhc-----
Q 014212 65 GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA----- 139 (429)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~----- 139 (429)
++|..+|.+| ..|..+|.++..+|++++|++.+++| .++.+|...+.+....++ |..|..
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~E--f~LA~~cgl~I 1276 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE--FRLAQMCGLHI 1276 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhH--HHHHHHHHHhh
Confidence 9999999986 58999999999999999999999999 445666655544433222 222221
Q ss_pred -------------CCccccccccccccccccccCCCCCCC
Q 014212 140 -------------VPESERHSVADSIDYQSIEVEPQYSGA 166 (429)
Q Consensus 140 -------------~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (429)
+...+.+.++...+.+++.+++.+.+.
T Consensus 1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1277 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 223456666666666787777665544
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.46 E-value=1.3e-06 Score=79.16 Aligned_cols=109 Identities=7% Similarity=-0.013 Sum_probs=93.0
Q ss_pred CcccHhHHHHHHHHHHHHHH-----hc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----hCHHHHH
Q 014212 7 ENSSVSRAEELKALANEAFR-----AK------KYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKL-----EEYGSAI 68 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~ 68 (429)
...+|++++.++=.|..... .| ...+|...++++++++|+ +..+|..+|..|.+. |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34467777777766666543 13 357899999999999999 677999999999995 9999999
Q ss_pred HHHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 014212 69 QDASKAIEIDPRY-PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 69 ~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~ 115 (429)
++|++|++++|+. ..+++.+|..+.. +|++++|...+++++...|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999975 9999999999988 599999999999999988773
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.45 E-value=3.3e-06 Score=66.65 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=90.0
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHH
Q 014212 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFK 99 (429)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~ 99 (429)
........+.+.|.+.+..++.+..+.+++|.++....+... ++..++..+..+ | ..-+++|.||..++++|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344456677888888888889999999999999998876665 999999888876 4 46689999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (429)
Q Consensus 100 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (429)
+|..+++.+++..|+|..+......+...+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777655443
No 225
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.40 E-value=8.8e-07 Score=81.97 Aligned_cols=118 Identities=11% Similarity=-0.024 Sum_probs=95.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHhh--CHHHHHHHHHHHHHhCCC--
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANR--AFAHTKLE--EYGSAIQDASKAIEIDPR-- 80 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--g~~~~~~g--~~~~A~~~~~~al~~~p~-- 80 (429)
+...+++...+.++.+.|+.+.|.+.+++..+.+|+ +......+ |.+.+..| ++++|...|+++....|+
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 478899999999999999999999999999999983 23344445 44466666 999999999999888776
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHh
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------SPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~ 131 (429)
.+..+++ ++..+|++++|...++++++. +|++++++.++..+...+|+
T Consensus 213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 3334444 899999999999999988876 58899999888777666653
No 226
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.38 E-value=2.4e-07 Score=89.63 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (429)
++..+|..++..|+|++|+.+|.++ ..|..+|.|+.++|+|++|+++++++ .++.+|-....++...
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 6667777777777777777777765 35666777777777777777777766 3556666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|+++.|..+... +...| +-...+..++...|+ +++|+.+++
T Consensus 191 ~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~--~eEai~lLe 231 (449)
T 1b89_A 191 KEFRLAQMCGLH-IVVHA---DELEELINYYQDRGY--FEELITMLE 231 (449)
T ss_dssp TCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCC--HHHHHHHHH
Confidence 666666554443 22222 223334444544444 555555555
No 227
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.5e-06 Score=84.63 Aligned_cols=127 Identities=9% Similarity=0.049 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
+.+....|..+.+.|+|++|++.|.++++..|... .++.++|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567789999999999999999999999887742 4688999999999999999999999998
Q ss_pred hCCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 77 IDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 77 ~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
..+.... +...++.++...|++++|+..+++++...+. ...++..++.++...|+ +.+|...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 159 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ--YKDSLALIN 159 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 8765443 3556788888999999999999999987432 35678889999988887 778877766
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=1.5e-06 Score=71.13 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=73.1
Q ss_pred cHhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212 10 SVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (429)
++.+.++.+++|..+.+.+ +.++++..++.+++.+ | +...+++++|..++++|+|++|.++++++++.+|++..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4467899999999999988 7779999999999998 7 568999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 014212 85 YYRRGAA 91 (429)
Q Consensus 85 ~~~la~~ 91 (429)
......+
T Consensus 108 ~~Lk~~i 114 (152)
T 1pc2_A 108 KELERLI 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655443
No 229
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.31 E-value=2.9e-07 Score=81.35 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=60.7
Q ss_pred CceEEEccCCCCHH------HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 222 KHFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 222 ~~~~v~GDihG~~~------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
.++.+++|+|++.. .+.++++ ....+.++++||+++ .+++..|..+. ..+++++||||...
T Consensus 26 m~i~~iSD~H~~~~~~~l~~~l~~~~~----~~~~D~vi~~GDl~~-----~~~l~~l~~~~----~~v~~V~GNHD~~~ 92 (215)
T 2a22_A 26 DLVLLIGDLKIPYGAKELPSNFRELLA----TDKINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAI 92 (215)
T ss_dssp EEEEEECCCCTTTTCSSCCGGGHHHHH----CTTCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSC
T ss_pred cEEEEEecCCCCCChHHHHHHHHHHHh----cCCCCEEEECCCCCC-----HHHHHHHHHcC----CCEEEecCCCcCcc
Confidence 35899999999752 3333333 123456999999997 57888877663 36899999999875
Q ss_pred chhhccchhhhhcccchHHHHHHHHHhccCccccee--c-CeEEEEecCc
Q 014212 296 MNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGL 342 (429)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~-~~~~~vH~gi 342 (429)
... . .+|+..+|....+ + .+++++||..
T Consensus 93 ~~~----~---------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~ 123 (215)
T 2a22_A 93 FNP----D---------------PESNGVFPEYVVVQIGEFKIGLMHGNQ 123 (215)
T ss_dssp CBC----C---------------GGGTBCCCSEEEEEETTEEEEEECSTT
T ss_pred ccc----C---------------hhhHhhCCceEEEecCCeEEEEEcCCc
Confidence 441 0 0256677755433 3 3899999876
No 230
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2e-06 Score=83.58 Aligned_cols=131 Identities=10% Similarity=0.012 Sum_probs=105.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---- 79 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---- 79 (429)
......++..+|..|...|++++|++.+.++++..+.. ..+...+|.++...|++++|+..+++++...+
T Consensus 51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (434)
T 4b4t_Q 51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR 130 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 34556789999999999999999999999999876553 23456788888889999999999999987643
Q ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 80 --RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 80 --~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
....++.++|.+|..+|++++|...+++++... +...+++..++.++..+++ +.+|...+.
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 199 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLT 199 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence 235788999999999999999999999998763 3335677788888877777 677766665
No 231
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.28 E-value=4.5e-06 Score=80.76 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
.+..+..+|.++.+.|+|++|++.|+++ .++..|...+.++...|+++.|..+..+ +..+| +-...+..+|
T Consensus 147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Y 217 (449)
T 1b89_A 147 NVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELINYY 217 (449)
T ss_dssp HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHHHHH
Confidence 3456789999999999999999999999 5799999999999999999999887775 33444 4455788999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+.|++++|+..+++++.+++.+..++..++.++..-+-.+..+.+..+.
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987776666667766665
No 232
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.28 E-value=6.9e-06 Score=77.41 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=86.2
Q ss_pred cccHhHHHHHHHHHHHHHHhcCH-------HHHHH-HHH--HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 8 NSSVSRAEELKALANEAFRAKKY-------SQAID-LYS--QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~-------~~A~~-~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
..+|+.+.++-.++.++.....+ ..++. .++ .++..+|.++.++..+|.++...|++++|+..+++|+.+
T Consensus 227 ~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 227 QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 45788788888777777532111 11111 122 123567999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
+| +..+|..+|.++...|++++|++.|.+|+.++|..+.
T Consensus 307 n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 307 EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 97 4778899999999999999999999999999998764
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.26 E-value=2.4e-06 Score=77.44 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=83.2
Q ss_pred hCCCCHHHHHHHHHHHHH-----------hhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHH
Q 014212 43 LNSQNAVYYANRAFAHTK-----------LEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAM-----GKFKEALKD 104 (429)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eA~~~ 104 (429)
.+|+++.+++..|.+... ++...+|...+++|++++|+ +..+|..+|.+|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 467778877777766533 22367899999999999999 677999999999995 999999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHH-HhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212 105 FQQVKKLSPND-PDAAQKVKECEKAV-KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (429)
Q Consensus 105 ~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (429)
|++|++++|+. ..++...+..+... ++ .+++..+++ +++...|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~~a~~~L~------------kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNN--RAGFDEALD------------RALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HHHHHHHHH------------HHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCC--HHHHHHHHH------------HHHcCCCCC
Confidence 99999999975 99998888876553 43 344444444 777776654
No 234
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.25 E-value=1e-06 Score=78.18 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=52.6
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
++.+++|+|+....+.++++..... ..+.++++||++++|+.+.++..++..|+.. +..+++++||||...
T Consensus 7 ri~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~pv~~v~GNHD~~~ 77 (228)
T 1uf3_A 7 YILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVPGPQDAPI 77 (228)
T ss_dssp EEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CSCEEEECCTTSCSH
T ss_pred EEEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEECCCCCchh
Confidence 5899999999999888877654321 2346999999999997666555555555432 345899999999764
No 235
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.22 E-value=1.6e-06 Score=75.03 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=44.1
Q ss_pred ceEEEccCCCCHH--HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 223 HFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 223 ~~~v~GDihG~~~--~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
++.+++|+|++.. .+...+...-.....+.++++||+++ .+++..|..+. ..+++++||||...
T Consensus 12 ~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~----~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 12 LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDENL 77 (192)
T ss_dssp EEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCCT
T ss_pred EEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcC----CCEEEEcCCcCccc
Confidence 4899999999642 23333333211233467999999997 57888777653 36899999999764
No 236
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=98.13 E-value=1.2e-06 Score=74.62 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=42.8
Q ss_pred ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
++.+++|+||+...+.++++.... ..+.++++||+.. +++ ..+. ..+++++||||...
T Consensus 8 ~i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~~------~~l---~~l~----~~~~~v~GNhD~~~ 65 (176)
T 3ck2_A 8 TIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSEL------RPD---SPLW----EGIRVVKGNMDFYA 65 (176)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCS------CTT---CGGG----TTEEECCCTTCCST
T ss_pred EEEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCch------HHH---Hhhh----CCeEEecCcccchh
Confidence 489999999999999999988753 3457999999721 222 2222 25899999999753
No 237
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.08 E-value=1e-05 Score=78.98 Aligned_cols=90 Identities=8% Similarity=0.018 Sum_probs=74.7
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
.....+|..+..+.++|.+|..+|+|++|+.++++++++ .|+.+..++++|.+|..+|++++|+..+++|++
T Consensus 320 ~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 320 RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999975 344466799999999999999999999999997
Q ss_pred h-----CCCCh---HHHHHHHHHHHH
Q 014212 77 I-----DPRYP---KGYYRRGAAYLA 94 (429)
Q Consensus 77 ~-----~p~~~---~~~~~la~~~~~ 94 (429)
+ -|+++ +.+.+|+.+..+
T Consensus 400 i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 400 IMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 6 35554 345556666544
No 238
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.02 E-value=1.3e-05 Score=78.20 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=69.4
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
.....+|..+..+.++|.+|..+|+|++|+.+|++++++ .|+.+..+.++|.+|..+|++++|+..|++|++
T Consensus 331 ~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 331 VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999975 344567799999999999999999999999998
Q ss_pred h-----CCCChHH
Q 014212 77 I-----DPRYPKG 84 (429)
Q Consensus 77 ~-----~p~~~~~ 84 (429)
+ -|+++..
T Consensus 411 i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 411 IMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTCTTCHHH
T ss_pred HHHHHcCCCChHH
Confidence 6 3566543
No 239
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=98.01 E-value=2.7e-06 Score=77.23 Aligned_cols=73 Identities=5% Similarity=0.058 Sum_probs=51.5
Q ss_pred CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc--------------------------HHHHHHHHH
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--------------------------VEVILTLFA 275 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--------------------------~e~~~~l~~ 275 (429)
.++.+++|+|+....+.++++..... ..+.+|++||++|+|+.+ .+...++..
T Consensus 6 mri~~iSDlH~~~~~~~~~l~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 84 (260)
T 2yvt_A 6 RKVLAIKNFKERFDLLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE 84 (260)
T ss_dssp CEEEEEECCTTCGGGHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCCChHHHHHHHHHHHhc-CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence 35899999999998888887765322 235699999999999753 123344444
Q ss_pred hhhhCCCeEEEecCCcccccc
Q 014212 276 FKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 276 lk~~~p~~~~~lrGNhe~~~~ 296 (429)
|+. .+..+++++||||....
T Consensus 85 l~~-~~~pv~~v~GNHD~~~~ 104 (260)
T 2yvt_A 85 IGE-LGVKTFVVPGKNDAPLK 104 (260)
T ss_dssp HHT-TCSEEEEECCTTSCCHH
T ss_pred HHh-cCCcEEEEcCCCCchhh
Confidence 432 24568999999998653
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.01 E-value=3e-05 Score=63.89 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC--
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PR-- 80 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-- 80 (429)
.+++.....++..+.|+.|+.....++.+..++ ..++..+|.+++..++|..|...|++|+... +.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467788899999999999999999977654322 3478899999999999999999999997642 11
Q ss_pred --------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212 81 --------------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (429)
Q Consensus 81 --------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (429)
..+..|.+|.||.+++++++|+..++..-. .-..+.....+|.++
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 126889999999999999999998764322 235667777776654
No 241
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.94 E-value=0.00018 Score=74.30 Aligned_cols=131 Identities=13% Similarity=0.019 Sum_probs=107.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQ-----------NAVYYANRAFAHTKLEEYGSA 67 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~~A 67 (429)
.|.....+...+......|++++|...|+++++. .|. ...+|...+....+.|+.+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 4566677888999999999999999999999975 253 345788899988899999999
Q ss_pred HHHHHHHHHh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 68 IQDASKAIEI-DPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 68 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
...|.+|++. .+.....|...|.+....++ .+.|...|+++++..|+++..+...+......++ .+.|..+++
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~--~~~AR~lfe 528 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE--ESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 9999999998 55567788888877777654 8999999999999999999988777776666665 566666666
No 242
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=97.90 E-value=1.3e-05 Score=69.43 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=48.5
Q ss_pred ceEEEccCCCCHHHH-------------HHHHHHcC-CCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEec
Q 014212 223 HFTVCGDVHGQFYDL-------------LNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 288 (429)
Q Consensus 223 ~~~v~GDihG~~~~l-------------~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lr 288 (429)
++.+++|+|+....+ ..+++... .....+.++++||++++|++..+++.++..+. ..+++++
T Consensus 3 ~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v~ 78 (195)
T 1xm7_A 3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILVM 78 (195)
T ss_dssp CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEEC
T ss_pred EEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEEe
Confidence 488999999644322 12222221 11234579999999999988888888887763 4699999
Q ss_pred CCccccc
Q 014212 289 GNHESKS 295 (429)
Q Consensus 289 GNhe~~~ 295 (429)
||||...
T Consensus 79 GNhD~~~ 85 (195)
T 1xm7_A 79 GNHDKDK 85 (195)
T ss_dssp CTTCCCH
T ss_pred CCCCCch
Confidence 9999864
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.0007 Score=54.20 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014212 45 SQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (429)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (429)
..+..+.+++|.++....+ ..+++..++..+...|. .-+.+|.||..++++|+|++|..+.+..++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4578889999999988764 55799999999998884 5679999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 014212 121 KVKECEKAVK 130 (429)
Q Consensus 121 ~l~~~~~~~~ 130 (429)
....+...+.
T Consensus 116 Lk~~Ie~~i~ 125 (144)
T 1y8m_A 116 LKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.81 E-value=0.00022 Score=56.31 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 46 QNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
-++.+.+++|.++.+..+ ..+++..++..+...|. .-+.+|.+|..++++|+|++|..+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 367888999999988764 55799999999998884 57899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHh
Q 014212 122 VKECEKAVKK 131 (429)
Q Consensus 122 l~~~~~~~~~ 131 (429)
...+...+.+
T Consensus 118 k~~Ie~ki~k 127 (134)
T 3o48_A 118 KSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777666553
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.78 E-value=0.00039 Score=56.07 Aligned_cols=111 Identities=16% Similarity=0.025 Sum_probs=95.3
Q ss_pred cccHhHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKY------SQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
-..|.+.+.|+......-+.|+. ++-++.|++|+..-|.. ...|...|.. ...+|.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 34678889999999999999999 89999999999877663 4567777754 677999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
++.+...++..|...|.--.++|+...|...+.+|+.+.|...+.+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999888999999999999999999999999999999999876543
No 246
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.77 E-value=5.4e-05 Score=78.11 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI-QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
.....|++++...|.++..|+..+..+...|+.++|. +.|++|+...|.+...|+.++......|++++|...|++++.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666666664 666666666666666666666666666666666666666665
Q ss_pred h
Q 014212 111 L 111 (429)
Q Consensus 111 ~ 111 (429)
.
T Consensus 407 ~ 407 (679)
T 4e6h_A 407 R 407 (679)
T ss_dssp H
T ss_pred H
Confidence 3
No 247
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=97.50 E-value=8.6e-05 Score=68.08 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=45.5
Q ss_pred CCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc--HHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212 221 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (429)
Q Consensus 221 ~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~ 296 (429)
+.++.+++|+|+....+ .. +..+.+|+.||++++|... .+++.+|.++. ...++++.||||...-
T Consensus 59 ~mri~~iSD~H~~~~~l-------~i-~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~---~~~v~~V~GNHD~~~d 125 (296)
T 3rl5_A 59 HTRFVCISDTRSRTDGI-------QM-PYGDILLHTGDFTELGLPSEVKKFNDWLGNLP---YEYKIVIAGNHELTFD 125 (296)
T ss_dssp EEEEEEEBCCTTCCTTC-------CC-CSCSEEEECSCCSSSCCHHHHHHHHHHHHTSC---CSEEEECCCTTCGGGC
T ss_pred CeEEEEEeeCCCCcchh-------cc-CCCCEEEECCcccCCCCHHHHHHHHHHHHhCC---CCeEEEEcCCcccccc
Confidence 35799999999987643 22 3456799999999999742 33445554442 1358999999998643
No 248
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=97.50 E-value=0.00019 Score=65.21 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=46.5
Q ss_pred ceEEEccCCCCH------------HHHHHHHHHcCCC-CCCCCeEEccccccCCCCcH--HHHHHHHHhhhhCCCeEEEe
Q 014212 223 HFTVCGDVHGQF------------YDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLS 287 (429)
Q Consensus 223 ~~~v~GDihG~~------------~~l~~~l~~~~~~-~~~~~~~~lGD~vdrG~~s~--e~~~~l~~lk~~~p~~~~~l 287 (429)
++.+++|+|+.. ..+.++++..... +..+.++++||+++.|..+. ++...+..+ +-.++.+
T Consensus 2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l----~~p~~~v 77 (274)
T 3d03_A 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL----NYPLYLI 77 (274)
T ss_dssp EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTC----SSCEEEE
T ss_pred EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhc----CCCEEEE
Confidence 478999999984 6677777765322 23456999999999887432 223333222 3358999
Q ss_pred cCCcccc
Q 014212 288 RGNHESK 294 (429)
Q Consensus 288 rGNhe~~ 294 (429)
+||||..
T Consensus 78 ~GNHD~~ 84 (274)
T 3d03_A 78 PGNHDDK 84 (274)
T ss_dssp CCTTSCH
T ss_pred CCCCCCH
Confidence 9999975
No 249
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.46 E-value=0.00033 Score=55.17 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQ---AIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
+...++.+++|..+.+..+... ++..++..++.+ | ..-..++.+|..++++|+|++|..+++.+++.+|+|..+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3567889999999998887766 999999999877 5 4678899999999999999999999999999999999887
Q ss_pred HHHHHH
Q 014212 86 YRRGAA 91 (429)
Q Consensus 86 ~~la~~ 91 (429)
-....+
T Consensus 112 ~Lk~~i 117 (126)
T 1nzn_A 112 ELERLI 117 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 250
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=97.44 E-value=0.00014 Score=68.17 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred CCceEEEccCCCC------------HHHHHHHHHHcCC-CCCCCCeEEccccccCCCCc-H-HHHHHHHHhhhhCCCeEE
Q 014212 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-V-EVILTLFAFKCMCPSAIY 285 (429)
Q Consensus 221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~-~~~~~~~~~lGD~vdrG~~s-~-e~~~~l~~lk~~~p~~~~ 285 (429)
..++.+++|+|.. ...+.++++.... ....+.+|++||+++.|... . .+...+..+....+-.++
T Consensus 25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~ 104 (330)
T 3ib7_A 25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV 104 (330)
T ss_dssp SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence 3468999999962 5667777765532 12345699999999998642 2 223333333222234699
Q ss_pred EecCCcccc
Q 014212 286 LSRGNHESK 294 (429)
Q Consensus 286 ~lrGNhe~~ 294 (429)
+++||||..
T Consensus 105 ~v~GNHD~~ 113 (330)
T 3ib7_A 105 WVMGNHDDR 113 (330)
T ss_dssp ECCCTTSCH
T ss_pred EeCCCCCCH
Confidence 999999964
No 251
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.28 E-value=0.0029 Score=62.84 Aligned_cols=128 Identities=9% Similarity=-0.088 Sum_probs=91.8
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA--------------------------------- 57 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~--------------------------------- 57 (429)
|..+..|...+..+...|+.++|...|++|+.. |.+...|...+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 455778888888899999999999999999999 9876555444332
Q ss_pred -------HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212 58 -------HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (429)
Q Consensus 58 -------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (429)
..+.++.+.|...|.+| ...+.....|...|......+ +.+.|...|+++++..|+.+..+..........
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 22456778888888888 433335566766676666655 588899999999998888887766665555555
Q ss_pred HhHHHHHhhcCCc
Q 014212 130 KKLKFEEAIAVPE 142 (429)
Q Consensus 130 ~~~~~~~a~~~~~ 142 (429)
++ .+.|..+++
T Consensus 368 ~~--~~~aR~l~e 378 (493)
T 2uy1_A 368 GD--EENARALFK 378 (493)
T ss_dssp TC--HHHHHHHHH
T ss_pred CC--HHHHHHHHH
Confidence 54 455555555
No 252
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=97.26 E-value=0.00015 Score=67.38 Aligned_cols=71 Identities=21% Similarity=0.086 Sum_probs=46.7
Q ss_pred ceEEEccCCCCH-------------------HHHHHHHHHcCCCCCCCCeEEccccccCCCC----cHHHHHHHHHhhhh
Q 014212 223 HFTVCGDVHGQF-------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF----SVEVILTLFAFKCM 279 (429)
Q Consensus 223 ~~~v~GDihG~~-------------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~----s~e~~~~l~~lk~~ 279 (429)
++.+++|+|... ..+.++++..... ..+.+|++||+++.|.. +.+.+..+..+...
T Consensus 7 ~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (322)
T 2nxf_A 7 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA 85 (322)
T ss_dssp EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred EEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHh
Confidence 488999999765 4566666554322 33569999999998852 23443333333223
Q ss_pred CCCeEEEecCCcccc
Q 014212 280 CPSAIYLSRGNHESK 294 (429)
Q Consensus 280 ~p~~~~~lrGNhe~~ 294 (429)
.+..+++++||||..
T Consensus 86 ~~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 86 CSVDVHHVWGNHEFY 100 (322)
T ss_dssp TCSEEEECCCHHHHH
T ss_pred cCCcEEEecCCCCcc
Confidence 456799999999984
No 253
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=97.23 E-value=0.00053 Score=65.94 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=48.5
Q ss_pred CCceEEEccCCCCH-------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH----HHHHHHhhhhCCCe
Q 014212 221 GKHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV----ILTLFAFKCMCPSA 283 (429)
Q Consensus 221 ~~~~~v~GDihG~~-------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~----~~~l~~lk~~~p~~ 283 (429)
..++.+++|+|+.. ..+.++++..... ..+.+|+.||++|++.-+.+. ...+..|+. .+-.
T Consensus 20 ~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~p 97 (386)
T 3av0_A 20 HMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIK 97 (386)
T ss_dssp CCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred CeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence 34689999999762 3456666654322 235689999999999544433 444444432 2357
Q ss_pred EEEecCCccccc
Q 014212 284 IYLSRGNHESKS 295 (429)
Q Consensus 284 ~~~lrGNhe~~~ 295 (429)
|+++.||||...
T Consensus 98 v~~v~GNHD~~~ 109 (386)
T 3av0_A 98 VYIVAGNHEMPR 109 (386)
T ss_dssp EEECCCGGGSCS
T ss_pred EEEEcCCCCCCc
Confidence 999999999764
No 254
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=97.19 E-value=0.00024 Score=66.90 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=43.7
Q ss_pred CCceEEEccCC-C----C-----------HHHHHHHHHHcCCCCCCCCeEEccc-cccCCCCcHHH----HHHHHHhhhh
Q 014212 221 GKHFTVCGDVH-G----Q-----------FYDLLNIFELNGLPSEENPYLFNGD-FVDRGSFSVEV----ILTLFAFKCM 279 (429)
Q Consensus 221 ~~~~~v~GDih-G----~-----------~~~l~~~l~~~~~~~~~~~~~~lGD-~vdrG~~s~e~----~~~l~~lk~~ 279 (429)
..++..++|+| | . ...+.++++..... ..+.+++.|| ++|++..+.+. ..++..|+..
T Consensus 18 ~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~ 96 (336)
T 2q8u_A 18 ELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT 96 (336)
T ss_dssp EEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 34689999999 7 3 33455555543222 2346899999 99999887764 4455555432
Q ss_pred CCCeEEEecCCccccc
Q 014212 280 CPSAIYLSRGNHESKS 295 (429)
Q Consensus 280 ~p~~~~~lrGNhe~~~ 295 (429)
-.++++.||||...
T Consensus 97 --~pv~~i~GNHD~~~ 110 (336)
T 2q8u_A 97 --APVVVLPGNHDWKG 110 (336)
T ss_dssp --SCEEECCC------
T ss_pred --CCEEEECCCCCccc
Confidence 35899999999765
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.12 E-value=0.0032 Score=49.73 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212 12 SRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (429)
-.+++.++.|..+.+..+. .+++..++..++.+|. .-..++.+|..++++|+|++|..+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3568889999999987754 5799999999998885 57889999999999999999999999999999999888665
Q ss_pred HHHHH
Q 014212 88 RGAAY 92 (429)
Q Consensus 88 la~~~ 92 (429)
...+-
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.10 E-value=0.0066 Score=48.54 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212 11 VSRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (429)
...+++.++.|..+.+..+. .+++..++..++..|. .-..++.+|..++++|+|++|..+.+..++.+|+|..+.-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999988755 4799999999998885 5678889999999999999999999999999999988765
Q ss_pred HHHHH
Q 014212 87 RRGAA 91 (429)
Q Consensus 87 ~la~~ 91 (429)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 257
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=97.08 E-value=0.00063 Score=64.00 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=44.6
Q ss_pred ceEEEccCCCCH-------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHH----HHHHhhhhCCCeEE
Q 014212 223 HFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAIY 285 (429)
Q Consensus 223 ~~~v~GDihG~~-------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~----~l~~lk~~~p~~~~ 285 (429)
++..++|+|... ..+.++++..... ..+.+++.||++|++..+.+.+. .+..|+. .+-.|+
T Consensus 2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~-~~~~v~ 79 (333)
T 1ii7_A 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE-HSIPVF 79 (333)
T ss_dssp EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT-TTCCEE
T ss_pred EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH-CCCcEE
Confidence 478899999864 3344455543222 23469999999998855544443 3333332 234699
Q ss_pred EecCCcccc
Q 014212 286 LSRGNHESK 294 (429)
Q Consensus 286 ~lrGNhe~~ 294 (429)
++.||||..
T Consensus 80 ~v~GNHD~~ 88 (333)
T 1ii7_A 80 AIEGNHDRT 88 (333)
T ss_dssp EECCTTTCC
T ss_pred EeCCcCCCc
Confidence 999999975
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.75 E-value=0.0036 Score=51.53 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------KGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PND- 115 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~- 115 (429)
+++..-...++..+.|+.|+-....++.+..+++ ++++.+|.+++..++|..|...|++|+.+. +.+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455556778889999999999999877653333 378899999999999999999999998753 111
Q ss_pred ---------------------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 116 ---------------------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 116 ---------------------~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
.+..+.++.|+..+++ +++|+...+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~--~~~Ai~~Le 146 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ--DKDAIAILD 146 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCC--HHHHHHHHh
Confidence 2688999999999998 788887766
No 259
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=96.75 E-value=0.0015 Score=63.98 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=46.1
Q ss_pred CceEEEccCCCC--------------------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCc--HHHHHHH
Q 014212 222 KHFTVCGDVHGQ--------------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTL 273 (429)
Q Consensus 222 ~~~~v~GDihG~--------------------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--~e~~~~l 273 (429)
.++.+++|+|.. ...+..+++..... ..+.+|++||+++.|... .++...+
T Consensus 40 ~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~l 118 (443)
T 2xmo_A 40 LSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK-KTDVLIISGDLTNNGEKTSHEELAKKL 118 (443)
T ss_dssp EEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH-TCSEEEEESCCBSSCCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCHHHHHHHHHHH
Confidence 458999999973 33455555543211 224699999999988743 3334444
Q ss_pred HHhhhhCCCeEEEecCCccccc
Q 014212 274 FAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 274 ~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
..+.. .+-.++.++||||...
T Consensus 119 ~~l~~-~~~~~~~v~GNHD~~~ 139 (443)
T 2xmo_A 119 TQVEK-NGTQVFVVPGNHDINN 139 (443)
T ss_dssp HHHHH-TTCEEEEECCTTTSSC
T ss_pred HHHHh-CCCeEEEECCcCCCCC
Confidence 44431 2456899999999753
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.54 E-value=0.042 Score=52.53 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHhhCHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ--------N--------------AVYYANRAFAHTKLEEYGSAIQD 70 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~lg~~~~~~g~~~~A~~~ 70 (429)
..+.+...|......|+.+.|.+.+.+|+.+-.. . ..+...++.++...|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445556666677789999999999999986311 1 12334567778889999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 110 (429)
+.+++..+|-+-.+|..+-.++...|+..+|+..|+++-+
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988755
No 261
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.47 E-value=0.052 Score=44.53 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----C------------
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----D------------ 78 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~------------ 78 (429)
+.-..++..++-.|+|..|+..+.+ -+...+.+.-+.||..+++|..|+.++++.++- +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 4455678888999999998877653 366788888899999999999999999999832 2
Q ss_pred -CCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 79 -PRYPKG-YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 79 -p~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
|.+-+. +..+|.++.+.|.-+||+.+|.......|=.+.+.
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 334444 45579999999999999999999999998766544
No 262
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.40 E-value=0.05 Score=53.82 Aligned_cols=114 Identities=11% Similarity=-0.025 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (429)
....|...+....+.++.+.|...|.+| +..+.....|...|..-+..+ +.+.|...|+++++..|+.+..|...+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3466778888888889999999999999 443346677877787777777 69999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
....|+.+.|...|+++ +.....+..........|+
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 89999999999999998 3456666666665555555
No 263
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.35 E-value=0.017 Score=46.54 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=71.0
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014212 42 ELNSQNAVYYANRAFAHTKLEEY------GSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (429)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~ 107 (429)
-+.|++++.|........+.|+. ++-++.|++|+..-|. ....|.+.|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35899999999999999988998 8889999999987764 23456667755 567999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 108 al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|+++....+.+|...+......++ ..+|.....
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgn--l~kARkILg 118 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGN--VKKSKQLLQ 118 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 999977775555555544444333 444444444
No 264
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=96.29 E-value=0.002 Score=61.62 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=44.5
Q ss_pred ceEEEccCCCCHH----------------HHHHHHHHcCCCCCCCCeEEccccc-cCCCCcHHHHHH----HHHhhhhCC
Q 014212 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVILT----LFAFKCMCP 281 (429)
Q Consensus 223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGD~v-drG~~s~e~~~~----l~~lk~~~p 281 (429)
++..++|+|.... .+.++++..... ..+.+++.||++ |++..+.+.+.. +..|+..
T Consensus 2 rilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-- 78 (379)
T 3tho_B 2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-- 78 (379)
T ss_dssp EEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--
T ss_pred eEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--
Confidence 4778889996443 344444433211 234689999999 988777654443 3334333
Q ss_pred CeEEEecCCccccc
Q 014212 282 SAIYLSRGNHESKS 295 (429)
Q Consensus 282 ~~~~~lrGNhe~~~ 295 (429)
-.|+++.||||...
T Consensus 79 ~~v~~i~GNHD~~~ 92 (379)
T 3tho_B 79 APVVVLPGNQDWKG 92 (379)
T ss_dssp SCEEECCCTTSCTT
T ss_pred CCEEEEcCCCcccc
Confidence 46999999999543
No 265
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=96.21 E-value=0.0065 Score=59.06 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=36.9
Q ss_pred CceEEEccCCCC------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHH
Q 014212 222 KHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 275 (429)
Q Consensus 222 ~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~ 275 (429)
.++..+.|+|-. ...+.++++.+... ..+.+++.||++|++.-+.+++..++.
T Consensus 77 mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~ps~~a~~~~~~ 141 (472)
T 4fbk_A 77 IRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQALR 141 (472)
T ss_dssp EEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCSBSSSSCCHHHHHHHHH
T ss_pred eEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHHH
Confidence 358889999964 23455666554322 235699999999999999887765543
No 266
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=96.21 E-value=0.0049 Score=59.54 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=50.2
Q ss_pred CceEEEccCCCCH------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhh----------
Q 014212 222 KHFTVCGDVHGQF------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---------- 279 (429)
Q Consensus 222 ~~~~v~GDihG~~------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~---------- 279 (429)
.++..++|+|-.. ..+.++++..... ..+.+++.||+.|++..+.+++..++.....
T Consensus 33 mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~-~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~~~ 111 (431)
T 3t1i_A 33 FKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN-EVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQF 111 (431)
T ss_dssp EEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCCCC
T ss_pred EEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc-CCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 4588999999532 2445555544322 2356999999999999888877766554321
Q ss_pred --------------------------CCCeEEEecCCccccc
Q 014212 280 --------------------------CPSAIYLSRGNHESKS 295 (429)
Q Consensus 280 --------------------------~p~~~~~lrGNhe~~~ 295 (429)
..-.|+++.||||...
T Consensus 112 ~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~ 153 (431)
T 3t1i_A 112 EILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPT 153 (431)
T ss_dssp EECSCC------------------CCBCSCEEECCCSSSCCB
T ss_pred eeccchhhccccccccccccccccccCCCcEEEEccCCCCcc
Confidence 1356999999999763
No 267
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=96.17 E-value=0.0062 Score=58.54 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=37.8
Q ss_pred CCceEEEccCCCC------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHH
Q 014212 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 275 (429)
Q Consensus 221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~ 275 (429)
..++..+.|+|-. ...+.++++..... ..+.+++.||++|++.-+.+++..++.
T Consensus 13 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~p~~~~~~~~~~ 78 (417)
T 4fbw_A 13 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQALR 78 (417)
T ss_dssp CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHHH
Confidence 3468999999965 23455666554322 335699999999999999887766544
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.11 E-value=0.074 Score=47.41 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=57.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (429)
..+++.|+.++|++.....++.+|.|+.....+-..+.-.|+++.|.+.++.+.+++|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 45778899999999999999999999999999999999999999999999999999997643
No 269
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.07 E-value=0.12 Score=51.25 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP-RYPKGYYRRGA 90 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 90 (429)
+...+..+-..|.+.|++++|.+.+++..+.. ..+...|..+-..|.+.|+.++|.+.|++..+..- -+...|..+-.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45567788889999999999999999987753 33577888888999999999999999999887642 26678888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 014212 91 AYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~ 112 (429)
++.+.|+.++|.+.+++.-+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 270
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.98 E-value=0.042 Score=54.12 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (429)
.+..+|.+..-...+..|..+|.+|..+.|++..+|+.||.+....|+.-+|+-+|.+++....-.+.+..++.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 345677777777788999999999999999999999999999999999999999999999988788999988877643
No 271
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.83 E-value=0.37 Score=47.60 Aligned_cols=124 Identities=12% Similarity=0.020 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCC-CChHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDP-RYPKG 84 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p-~~~~~ 84 (429)
.+...-..+.+.|+.++|++.|++..+.. +-+...|..+-.++... ++.++|.+.|++.....- -+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 35555677889999999999999988753 22455666665555443 347889999988876532 26778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 142 (429)
|..+-.+|.+.|+.++|...|++..+.. |+ ...+..+-..+...|+ .++|..+++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~--~~~A~~l~~ 164 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGD--ADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCC--HHHHHHHHH
Confidence 8889999999999999999999888753 43 4455566566666665 677777665
No 272
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.033 Score=57.61 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (429)
.+...+..+..+|+|+-|++..++|+...|.....|..|+.||..+|+|+.|+-.++
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 444455555566666666666666666666666666666666666666666654443
No 273
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=95.44 E-value=0.021 Score=55.35 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=41.8
Q ss_pred CceEEEccCCCCHHHHHHHHHHc-CCCCCCCCeEEccccccCCCCc-------HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGD~vdrG~~s-------~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
.++.++||+|....... .++.. ..+...+.++++||+++.+... .+...++-.+.. .--++.+.||||.
T Consensus 120 ~~f~~igD~~~~~~~~~-~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~--~~P~~~v~GNHD~ 196 (424)
T 2qfp_A 120 YTFGLIGDLGQSFDSNT-TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVA--YQPWIWTAGNHEI 196 (424)
T ss_dssp EEEEEECSCTTBHHHHH-HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHT--TSCEEECCCHHHH
T ss_pred eEEEEEEeCCCCCChHH-HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHh--cCCeEeecCCccc
Confidence 46889999998765432 33332 2222345699999999764211 122233333332 2347889999997
Q ss_pred c
Q 014212 294 K 294 (429)
Q Consensus 294 ~ 294 (429)
.
T Consensus 197 ~ 197 (424)
T 2qfp_A 197 E 197 (424)
T ss_dssp C
T ss_pred c
Confidence 5
No 274
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.36 E-value=0.082 Score=52.09 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (429)
..+..+|........+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++.....++.+.-++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999888899999999888765
Q ss_pred c
Q 014212 95 M 95 (429)
Q Consensus 95 ~ 95 (429)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.14 Score=53.08 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHh-hCHHHHHHHHHHHHHh--------CCCC----------hHHHHHH
Q 014212 30 YSQAIDLYSQAIELNSQNAVYYANRAFAH--TKL-EEYGSAIQDASKAIEI--------DPRY----------PKGYYRR 88 (429)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l 88 (429)
++.|+..+++..+.+|.....+. .+.+. ... .+=-+|++...++++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 57788888888888887654332 22221 112 2233566666666531 2222 2234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (429)
Q Consensus 89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 140 (429)
+.-+...|+++-|++.-++|+...|+....|+.|+.+|..+++ |+.|+..
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d--~e~ALLt 393 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE--YEKALFA 393 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc--HHHHHHH
Confidence 6667778888888888888888888888888888888888888 6777653
No 276
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=94.82 E-value=0.035 Score=53.82 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=40.3
Q ss_pred CceEEEccCCCCHHHHHHHHHHc-CCCCCCCCeEEccccccCCCC-----c-H-HHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSF-----S-V-EVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGD~vdrG~~-----s-~-e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
.++.++||+|...... ..++.. ..+...+-++++||++..+.. . . +....+-.+.. .--++.+.||||.
T Consensus 127 ~~f~~~gD~~~~~~~~-~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~--~~P~~~v~GNHD~ 203 (426)
T 1xzw_A 127 YVFGLIGDIGQTHDSN-TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVA--YQPWIWTAGNHEI 203 (426)
T ss_dssp EEEEEECSCTTBHHHH-HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHT--TSCEECCCCGGGC
T ss_pred eEEEEEEeCCCCCchH-HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHh--cCCEEEecccccc
Confidence 4688999999875322 222222 111234569999999965321 1 1 12233333332 3347889999997
Q ss_pred cc
Q 014212 294 KS 295 (429)
Q Consensus 294 ~~ 295 (429)
..
T Consensus 204 ~~ 205 (426)
T 1xzw_A 204 DY 205 (426)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 277
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=94.50 E-value=0.017 Score=53.06 Aligned_cols=72 Identities=17% Similarity=0.025 Sum_probs=39.5
Q ss_pred CceEEEccCCCCH---------HHHHHHHHH-cCCCCCCCCeEEccccccC-CC---CcHHHHHHHHHhh---hhCCCeE
Q 014212 222 KHFTVCGDVHGQF---------YDLLNIFEL-NGLPSEENPYLFNGDFVDR-GS---FSVEVILTLFAFK---CMCPSAI 284 (429)
Q Consensus 222 ~~~~v~GDihG~~---------~~l~~~l~~-~~~~~~~~~~~~lGD~vdr-G~---~s~e~~~~l~~lk---~~~p~~~ 284 (429)
.++.++||+|... ..+.+.+.. ... ...+.+|++||++.. |. ...+....+..+. ...+-.+
T Consensus 7 ~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~-~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p~ 85 (313)
T 1ute_A 7 LRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKT-LGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPW 85 (313)
T ss_dssp EEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHH-HCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCE
T ss_pred eEEEEEcccCCCCCccccCchHHHHHHHHHHHHHh-cCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCCE
Confidence 3589999999863 234444432 111 123469999999643 11 1123333322211 1114568
Q ss_pred EEecCCcccc
Q 014212 285 YLSRGNHESK 294 (429)
Q Consensus 285 ~~lrGNhe~~ 294 (429)
+.+.||||..
T Consensus 86 ~~v~GNHD~~ 95 (313)
T 1ute_A 86 HVLAGNHDHL 95 (313)
T ss_dssp EECCCHHHHH
T ss_pred EEECCCCccC
Confidence 9999999974
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.35 Score=46.73 Aligned_cols=100 Identities=11% Similarity=-0.083 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CCh----HHH
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYP----KGY 85 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~ 85 (429)
.++..+|..+++.|++++|.+.|.++...... -...+.....++...+++..|...+.++..... .++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46778999999999999999999998876443 367788888999999999999999999976532 233 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~ 114 (429)
...|.++...++|.+|...|..++.-...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 55678888999999999999988876443
No 279
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.76 E-value=0.28 Score=46.73 Aligned_cols=63 Identities=10% Similarity=-0.049 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (429)
.+...++..+...|++++|+..+.+++..+|.+..++..+-.++...|+..+|+..|+++.+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999987553
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.57 E-value=1.3 Score=42.02 Aligned_cols=93 Identities=16% Similarity=0.056 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CCCh----HHH
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQ--N----AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRYP----KGY 85 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~----~~~ 85 (429)
.+|..|+..|+|.+|++.+.+..+.... + ...+..-..+|..++++.++...+.+|.... +.+| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999999998874222 2 3456667888999999999999999987653 1223 345
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 014212 86 YRRGAAYL-AMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 86 ~~la~~~~-~~g~~~eA~~~~~~al~~ 111 (429)
..-|..+. ..++|.+|...|-.+++-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 66688999 899999999999999754
No 281
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.45 E-value=0.64 Score=48.40 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (429)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (429)
...+...|++++|.+..+.. ++...|..+|..+.+.++++.|+.+|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34557788888888887753 56788888888888888888888888875
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.25 E-value=0.51 Score=42.04 Aligned_cols=63 Identities=19% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
.+++.|++++|++.....++.+|.++.....+...+.-.|+++.|...++.+.+++|+....-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999986544
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.75 E-value=3.6 Score=33.86 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h---------------CCCCHHH-HHHHHHHHHHhhCHHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE--L---------------NSQNAVY-YANRAFAHTKLEEYGSAIQDASK 73 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~ 73 (429)
+++.+.+-.+.+|.+.++|..|+..++..++ . +|.+... +..+|..+.+.|+-++|+.++..
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 4566778889999999999999999999993 2 3444444 55689999999999999999999
Q ss_pred HHHhCC
Q 014212 74 AIEIDP 79 (429)
Q Consensus 74 al~~~p 79 (429)
....+|
T Consensus 140 Sf~~~~ 145 (242)
T 3kae_A 140 SFGKSF 145 (242)
T ss_dssp HHHHCC
T ss_pred hcCCcc
Confidence 887765
No 284
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=3.5 Score=39.89 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHH---hCCCCh
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQN----AVYYANRAFAHTKLEEYGSAIQDASKAIE---IDPRYP 82 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~ 82 (429)
..+.....+|..+...|++.+|...+.....-. ..+ ...+......+...+++.+|...++++.. -.+..+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 456777889999999999999999999876421 122 45677788899999999999999998742 233333
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 83 ----KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 83 ----~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
..+...|..+...++|.+|..+|..++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35667789999999999999999999874
No 285
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=91.85 E-value=0.046 Score=51.21 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=40.1
Q ss_pred ceEEEccCCCCHHHHHH---HHHHcCCCCCCCCeEEccccccCCCCcH------HHHHHHHHhh-hhCCCeEEEecCCcc
Q 014212 223 HFTVCGDVHGQFYDLLN---IFELNGLPSEENPYLFNGDFVDRGSFSV------EVILTLFAFK-CMCPSAIYLSRGNHE 292 (429)
Q Consensus 223 ~~~v~GDihG~~~~l~~---~l~~~~~~~~~~~~~~lGD~vdrG~~s~------e~~~~l~~lk-~~~p~~~~~lrGNhe 292 (429)
++.++||.|.....-.. .+.........+-++++||+++.|..+. +.+.-++... ....--++.+.||||
T Consensus 5 ~f~~igD~g~g~~~q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlGNHD 84 (342)
T 3tgh_A 5 RFASLGDWGKDTKGQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRD 84 (342)
T ss_dssp EEEECCSCBSCCHHHHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCCHHH
T ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCCCCc
Confidence 48999999975432222 2211110122346999999998887532 2222222111 122345799999999
Q ss_pred cc
Q 014212 293 SK 294 (429)
Q Consensus 293 ~~ 294 (429)
..
T Consensus 85 ~~ 86 (342)
T 3tgh_A 85 WT 86 (342)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 286
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.70 E-value=0.85 Score=47.41 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 014212 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (429)
Q Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 97 (429)
...+..+.+.|.+++|++..+ ++...+ ....+.|++++|.+..+ ..++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 555666777788888776553 333333 34567899999998753 44778999999999999999
Q ss_pred HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC-ccccccccccccccc
Q 014212 98 FKEALKDFQQVK--------KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP-ESERHSVADSIDYQS 156 (429)
Q Consensus 98 ~~eA~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~a~~~~~~~ 156 (429)
++.|+.+|.++- .....+.+.+..++......++ ++.|...+ ..++.++|.+++.+.
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK--FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 999999999862 2235677777777766666555 55555433 245666665555444
No 287
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.39 E-value=1.2 Score=37.04 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=41.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (429)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (429)
......|+++.|.+..++. ++...|..+|...+..|+++-|..+|+++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4556789999999887765 778899999999999999999999998863
No 288
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=91.31 E-value=0.098 Score=52.18 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=41.1
Q ss_pred ceEEEccCCCCHH----------------HHHHHHHHcCCCCCCCCeEEccccccCCCCc----------HHHHHHHHHh
Q 014212 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS----------VEVILTLFAF 276 (429)
Q Consensus 223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s----------~e~~~~l~~l 276 (429)
++..+.|+||.+. .+..++++.....+..-++..||.++.++.+ ..++..+-.+
T Consensus 21 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ln~l 100 (527)
T 3qfk_A 21 AFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRM 100 (527)
T ss_dssp EEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHHHHT
T ss_pred EEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHHHhc
Confidence 4788899999762 5556666554322222345579999987553 3455555555
Q ss_pred hhhCCCeEEEecCCccc
Q 014212 277 KCMCPSAIYLSRGNHES 293 (429)
Q Consensus 277 k~~~p~~~~~lrGNhe~ 293 (429)
. ++ ++..||||.
T Consensus 101 g---~D--~~t~GNHef 112 (527)
T 3qfk_A 101 A---FD--FGTLGNHEF 112 (527)
T ss_dssp C---CC--EECCCGGGG
T ss_pred C---Cc--EEecccccc
Confidence 3 33 445799993
No 289
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.91 E-value=4.8 Score=42.98 Aligned_cols=101 Identities=7% Similarity=-0.036 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYY 86 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 86 (429)
.....+..+-+.|.+.|+.++|.+.+.+.-+. ..-+...|..+-..|.+.|++++|.+.|++..+.. .-+...|.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 33456888889999999999999999764432 34467788999999999999999999999998753 12667788
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 014212 87 RRGAAYLAMGK-FKEALKDFQQVKKLS 112 (429)
Q Consensus 87 ~la~~~~~~g~-~~eA~~~~~~al~~~ 112 (429)
.+-.++.+.|+ .++|...|++..+..
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888999998 478899999988864
No 290
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.58 E-value=1.7 Score=41.26 Aligned_cols=100 Identities=9% Similarity=0.004 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------h---CCCCHH---------------------
Q 014212 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-------------------L---NSQNAV--------------------- 49 (429)
Q Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------~---~p~~~~--------------------- 49 (429)
...+.+.+|..|.+.|++++-.+.+..... . -|+...
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999987777655421 1 233211
Q ss_pred ---HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 50 ---YYANRAFAHTKLEEYGSAIQDASKAIEIDP--RY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 50 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
.-..+|..|+..|+|.+|.+.+.+.++--. ++ .+.+.....+|..++++.++...+.+|....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 113789999999999999999998876321 12 3567777889999999999999999997654
No 291
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=88.99 E-value=0.29 Score=49.03 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=41.0
Q ss_pred ceEEEccCCCCH-----------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhC
Q 014212 223 HFTVCGDVHGQF-----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMC 280 (429)
Q Consensus 223 ~~~v~GDihG~~-----------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~ 280 (429)
++..++|+||.+ ..+..++++.....+..-++..||++++.+.+ ..++..+-.+ .
T Consensus 31 ~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~l---g 107 (552)
T 2z1a_A 31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRL---R 107 (552)
T ss_dssp EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHT---T
T ss_pred EEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhc---C
Confidence 378899999753 45555665443211222466789999977642 3455555444 3
Q ss_pred CCeEEEecCCcccc
Q 014212 281 PSAIYLSRGNHESK 294 (429)
Q Consensus 281 p~~~~~lrGNhe~~ 294 (429)
++ ++..||||..
T Consensus 108 ~d--~~~lGNHEfd 119 (552)
T 2z1a_A 108 YR--AMALGNHEFD 119 (552)
T ss_dssp CC--EEECCGGGGT
T ss_pred CC--cccccccccc
Confidence 34 5567999963
No 292
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=88.93 E-value=0.15 Score=50.75 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=40.3
Q ss_pred ceEEEccCCCCHH----------HHHHHHHHcCCC----CCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCe
Q 014212 223 HFTVCGDVHGQFY----------DLLNIFELNGLP----SEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSA 283 (429)
Q Consensus 223 ~~~v~GDihG~~~----------~l~~~l~~~~~~----~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~ 283 (429)
++..++|+||.+. .+..+++..... ....-++..||+++..+.+ ..++..+-.+. ++
T Consensus 10 ~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg---~d- 85 (516)
T 1hp1_A 10 TVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG---YD- 85 (516)
T ss_dssp EEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHT---CC-
T ss_pred EEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccC---CC-
Confidence 4788999999743 344444433211 1123477789999765532 34555555553 33
Q ss_pred EEEecCCcccc
Q 014212 284 IYLSRGNHESK 294 (429)
Q Consensus 284 ~~~lrGNhe~~ 294 (429)
++..||||..
T Consensus 86 -~~~~GNHEfd 95 (516)
T 1hp1_A 86 -AMAIGNHEFD 95 (516)
T ss_dssp -EEECCGGGGS
T ss_pred -EEeecccccc
Confidence 5668999963
No 293
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.37 E-value=2.1 Score=46.86 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---C-----------------
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---D----------------- 78 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~----------------- 78 (429)
.+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|++|-.- +
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455667777765543 44567888888899999999999999999999887311 0
Q ss_pred ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212 79 ---PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (429)
Q Consensus 79 ---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (429)
...+..|+.+..++.+.+.++.+++.-+.|++..+.+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~ 932 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 932 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence 1123456777888999999999999999999887543
No 294
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=88.34 E-value=0.28 Score=49.05 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=41.2
Q ss_pred ceEEEccCCCCH--------------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhh
Q 014212 223 HFTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFK 277 (429)
Q Consensus 223 ~~~v~GDihG~~--------------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk 277 (429)
++..+.|+||.+ ..+..++++.....+..-++..||.++..+.+ ..++..+-.+.
T Consensus 27 ~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln~lg 106 (546)
T 4h2g_A 27 TILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR 106 (546)
T ss_dssp EEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHT
T ss_pred EEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHHHhcC
Confidence 378889999753 44555655543222223467789999977643 44555555553
Q ss_pred hhCCCeEEEecCCccc
Q 014212 278 CMCPSAIYLSRGNHES 293 (429)
Q Consensus 278 ~~~p~~~~~lrGNhe~ 293 (429)
++ ++..||||.
T Consensus 107 ---~d--~~~~GNHEf 117 (546)
T 4h2g_A 107 ---YD--AMALGNHEF 117 (546)
T ss_dssp ---CS--EEECCGGGG
T ss_pred ---Cc--EEeccCccc
Confidence 34 456799994
No 295
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.00 E-value=1 Score=49.42 Aligned_cols=95 Identities=14% Similarity=0.022 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHhhCHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----------------------NSQNAVYYANRAFAHTKLEEYGSAIQD 70 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~ 70 (429)
+..-+-+|.+++..|++++|.++|++|..- ....+..|......+.+.+.++.+++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334588999999999999999999987421 111245677888888999999999999
Q ss_pred HHHHHHhCCCC-h----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212 71 ASKAIEIDPRY-P----KGYYRRGAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 71 ~~~al~~~p~~-~----~~~~~la~~~~~~g~~~eA~~~~~~a 108 (429)
.+.|++..+.+ . ..|.++-..+..+|+|++|...+...
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 99999876543 2 25788889999999999999887544
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.82 E-value=1.4 Score=43.30 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (429)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (429)
+..+..+-..|...+.+++|.....++. .|.+ ...+|.+|.++.-+++|.+|.+++..|++..|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 5667778889999999999999999885 4432 35678889999999999999999999999988654
No 297
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=84.04 E-value=0.74 Score=46.36 Aligned_cols=66 Identities=15% Similarity=0.005 Sum_probs=39.3
Q ss_pred ceEEEccCCCCHH---------------------HHHHHHHHcCCCCCCCCeEEccccccCCC-----CcHHHHHHHHHh
Q 014212 223 HFTVCGDVHGQFY---------------------DLLNIFELNGLPSEENPYLFNGDFVDRGS-----FSVEVILTLFAF 276 (429)
Q Consensus 223 ~~~v~GDihG~~~---------------------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~-----~s~e~~~~l~~l 276 (429)
++..+.|+||.+. .+..++++........-++..||.++..+ ....++..+-.+
T Consensus 14 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~l 93 (579)
T 3ztv_A 14 SILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAG 93 (579)
T ss_dssp EEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHHHHH
T ss_pred EEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHHHhc
Confidence 3788899998743 34445554432212224666799998664 234455555555
Q ss_pred hhhCCCeEEEecCCccc
Q 014212 277 KCMCPSAIYLSRGNHES 293 (429)
Q Consensus 277 k~~~p~~~~~lrGNhe~ 293 (429)
. ++- +..||||.
T Consensus 94 g---~D~--~tlGNHEf 105 (579)
T 3ztv_A 94 N---FHY--FTLGNHEF 105 (579)
T ss_dssp T---CSE--EECCSGGG
T ss_pred C---cCe--eecccccc
Confidence 3 343 45799994
No 298
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=81.72 E-value=0.69 Score=41.73 Aligned_cols=69 Identities=20% Similarity=0.150 Sum_probs=41.4
Q ss_pred CceEEEccCCCCH--HHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212 222 KHFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 222 ~~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~ 295 (429)
.++..+||+||.. ..+...+++.......+.++..||-.-.| +.+..+...+..+.. +-+. .||||.-.
T Consensus 5 m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G~---Da~T--lGNHefD~ 76 (281)
T 1t71_A 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV---NYIT--MGNHTWFQ 76 (281)
T ss_dssp CEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTC---CEEE--CCTTTTCC
T ss_pred EEEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcCC---CEEE--EccCcccC
Confidence 3589999999875 22333444332111124567777666545 557788888877753 4333 49999653
No 299
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.79 E-value=4.7 Score=33.44 Aligned_cols=55 Identities=20% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (429)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 108 (429)
.|+...+.++ .+.|+++.|.+..+.. ++...|..||......|+++-|..+|+++
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3556666554 5799999999987654 67889999999999999999999999876
No 300
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.96 E-value=5 Score=40.56 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=48.4
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 014212 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKD 104 (429)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 104 (429)
+..+...++...+.++.....++.. ...++...++.|+++.|...+++.-......+...|-+|.++..+|+.++|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~ 341 (618)
T 1qsa_A 263 MGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (618)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHH
Confidence 3334234455555554433333222 222333344567777777777654432234566677777777778888888877
Q ss_pred HHHHHH
Q 014212 105 FQQVKK 110 (429)
Q Consensus 105 ~~~al~ 110 (429)
|+++..
T Consensus 342 ~~~~a~ 347 (618)
T 1qsa_A 342 LHQLMQ 347 (618)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 777764
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.32 E-value=14 Score=39.44 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=72.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hC--------------------
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-ID-------------------- 78 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-------------------- 78 (429)
+...+...+.++-|. +.+.-.|.++..-+-+|.++...|++++|..+|++|-. +.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556677778777543 45567788888889999999999999999999998641 10
Q ss_pred CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q 014212 79 PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPDA 118 (429)
Q Consensus 79 p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~ 118 (429)
+. ....|.....++...+-++-++...+.|++.. ++++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 01 12366778899999999999999999999864 455543
No 302
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=77.32 E-value=0.96 Score=44.72 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=36.2
Q ss_pred ceEEEccCCCCH------------------HHHHHHHHHcCCCCCCCCeEE-ccccccCCCCc-----HHHHHHHHHhhh
Q 014212 223 HFTVCGDVHGQF------------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSFS-----VEVILTLFAFKC 278 (429)
Q Consensus 223 ~~~v~GDihG~~------------------~~l~~~l~~~~~~~~~~~~~~-lGD~vdrG~~s-----~e~~~~l~~lk~ 278 (429)
++..+.|+||++ ..+..++++..... .+.+++ .||.++..+.+ ..++..+-.+
T Consensus 8 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~-~~~llldaGD~~~g~~~~~~~~g~~~~~~ln~l-- 84 (509)
T 3ive_A 8 TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKN-KATWFFDAGDYFTGPYISSLTKGKAIIDIMNTM-- 84 (509)
T ss_dssp EEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHC-SSEEEEECSCCSSSSHHHHTTTTHHHHHHHTTS--
T ss_pred EEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcC-CCeEEEECCCCCCCchhhhhcCChHHHHHHHhc--
Confidence 378889999864 34555555443222 233555 89999843222 3344444333
Q ss_pred hCCCeEEEecCCccc
Q 014212 279 MCPSAIYLSRGNHES 293 (429)
Q Consensus 279 ~~p~~~~~lrGNhe~ 293 (429)
-++ ++..||||.
T Consensus 85 -g~D--~~tlGNHEf 96 (509)
T 3ive_A 85 -PFD--AVTIGNHEF 96 (509)
T ss_dssp -CCS--EECCCGGGG
T ss_pred -CCc--EEeeccccc
Confidence 334 445699993
No 303
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=76.42 E-value=2.1 Score=39.81 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=25.1
Q ss_pred eEEEccCCCCH----------------HHHHHHHHHcCCCCCCCCeEEccccccCCCC
Q 014212 224 FTVCGDVHGQF----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF 265 (429)
Q Consensus 224 ~~v~GDihG~~----------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~ 265 (429)
++...|+||++ ..+..++++.....+..-++..||.+...|.
T Consensus 14 Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs~~ 71 (341)
T 3gve_A 14 ILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPL 71 (341)
T ss_dssp EEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHH
T ss_pred EEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCcHH
Confidence 78889999976 3344455443222122234567999976543
No 304
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.22 E-value=12 Score=29.72 Aligned_cols=80 Identities=10% Similarity=-0.017 Sum_probs=53.7
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212 28 KKYSQAIDLYSQAIELNSQNAVYYANRA-FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (429)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 106 (429)
|+...-+.+|-+. +.++. +..+| ..+..+|+-++-.+.+...+.-.+-+++.++.+|.+|.+.|+..+|.+.+.
T Consensus 75 ~NlKrVi~C~~~~---n~~se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLNE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp SCTHHHHHHHHHT---TCCCH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchHH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4555555555442 22222 22232 445667777777777766656566678999999999999999999999999
Q ss_pred HHHHhC
Q 014212 107 QVKKLS 112 (429)
Q Consensus 107 ~al~~~ 112 (429)
+|.+..
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998753
No 305
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=74.96 E-value=2.3 Score=39.58 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=25.0
Q ss_pred eEEEccCCCCH----------------HHHHHHHHHcCCCCCCCCeEEccccccCCCC
Q 014212 224 FTVCGDVHGQF----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF 265 (429)
Q Consensus 224 ~~v~GDihG~~----------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~ 265 (429)
++...|+||++ ..+..++++.....+..-++..||.+...+.
T Consensus 11 Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs~~ 68 (339)
T 3jyf_A 11 IMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGSPL 68 (339)
T ss_dssp EEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSSHH
T ss_pred EEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCchh
Confidence 77788999875 3344455544322222235668999975443
No 306
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.45 E-value=14 Score=29.22 Aligned_cols=108 Identities=6% Similarity=-0.008 Sum_probs=70.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCH--------------H----HHHHHHHHH--HHhhCHHHHHHHHHHHHHhCC
Q 014212 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA--------------V----YYANRAFAH--TKLEEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~----~~~~lg~~~--~~~g~~~~A~~~~~~al~~~p 79 (429)
.|..+.-.|..++.++...+...-.+-.. . .+-.+|..+ ...|+....+.+|-+. .
T Consensus 13 eAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~----n 88 (172)
T 1wy6_A 13 DAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN----N 88 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT----T
T ss_pred HHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh----c
Confidence 46667778889999999888877554321 1 122333332 2345677777777543 2
Q ss_pred CChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 80 RYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 80 ~~~~~~~~la-~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
.+.+ |+.+| .....+|+-++-.+.+...+...+-+|+.+..++.++..+|..
T Consensus 89 ~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~ 141 (172)
T 1wy6_A 89 TLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE 141 (172)
T ss_dssp CCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH
T ss_pred chHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcch
Confidence 2333 45555 4667888888777777776676777799999999999988884
No 307
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.09 E-value=4 Score=29.16 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=22.6
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
....+..+...|...-+.|+|++|+.+|.++++
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344556666777777777777777777777664
No 308
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=71.70 E-value=1.4 Score=44.14 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=38.0
Q ss_pred ceEEEccCCCCH----------------HHHHHHHHHcC--CCCCCCCeEEccccccCCCCc-------HHHHHHHHHhh
Q 014212 223 HFTVCGDVHGQF----------------YDLLNIFELNG--LPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFK 277 (429)
Q Consensus 223 ~~~v~GDihG~~----------------~~l~~~l~~~~--~~~~~~~~~~lGD~vdrG~~s-------~e~~~~l~~lk 277 (429)
++..++|+||.+ ..+...+++.. ..+ ..-++..||.++..+.+ ..++..+-.+.
T Consensus 17 ~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~-~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~ln~lg 95 (557)
T 3c9f_A 17 NFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQ-DLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQD 95 (557)
T ss_dssp EEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTC-EEEEEECSCCCSSCHHHHSSSSTTTTTHHHHTTSC
T ss_pred EEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCccchhhcccCCHHHHHHHHhcC
Confidence 488899999974 23333444311 111 22357789999765422 23455554443
Q ss_pred hhCCCeEEEecCCccccc
Q 014212 278 CMCPSAIYLSRGNHESKS 295 (429)
Q Consensus 278 ~~~p~~~~~lrGNhe~~~ 295 (429)
.+ ++..||||.-.
T Consensus 96 ---~D--a~tlGNHEfD~ 108 (557)
T 3c9f_A 96 ---YD--LLTIGNHELYL 108 (557)
T ss_dssp ---CS--EECCCGGGSSS
T ss_pred ---CC--EEeecchhccc
Confidence 34 44569999753
No 309
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=70.13 E-value=9.5 Score=38.86 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 014212 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62 (429)
Q Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 62 (429)
+.....|..++..|+|..|.+..+.++..+|++..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666666666665555
No 310
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=69.13 E-value=17 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (429)
..+|..+...|++++|..+|-+|+...|.-.+.+.-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456777778888888888888888888776655433
No 311
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.02 E-value=70 Score=29.31 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHH
Q 014212 80 RYPKGYYRRGAAYLAMGKFKEALKDF 105 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~eA~~~~ 105 (429)
.+++.+..+|..|.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566666677777777776666665
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.99 E-value=9.4 Score=37.40 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=58.2
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (429)
....+..+..+-..|...+.|++|.....++. .|.. ...++.+|.++.-.++|.+|.+++..|+..-|.+
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 34566777888889999999999999999984 4432 5667788999999999999999999999887754
No 313
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.37 E-value=18 Score=26.20 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=22.3
Q ss_pred ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014212 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (429)
Q Consensus 9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 41 (429)
..-+.+..+-.+|..+.+.|+|++|+++.++|.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344456666677777777777777777666654
No 314
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=65.62 E-value=15 Score=35.35 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhCCCC------------H----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--C--------Ch
Q 014212 29 KYSQAIDLYSQAIELNSQN------------A----VYYANRAFAHTKLEEYGSAIQDASKAIEIDP--R--------YP 82 (429)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~------------~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~--------~~ 82 (429)
..++|.....++....-++ - ..-.++-.+|+++++...+...++..-...+ . -.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4567777788877752211 0 1123456789999999988887755443322 1 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL-SPND 115 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~ 115 (429)
..+|.+|..+...++|.+|.+++..|++. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56888999999999999999999999999 7765
No 315
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.38 E-value=79 Score=28.64 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212 80 RYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (429)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~eA~~~~~ 106 (429)
.+++.|..+|..|.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 366778888888888888888887764
No 316
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=65.25 E-value=18 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVY 50 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 50 (429)
.+|..+...|++++|+.+|-+|+...|.-...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 56667777777777777777777776665443
No 317
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=64.93 E-value=8.2 Score=34.10 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=41.9
Q ss_pred ceEEEccCCCCH--HHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++..+||+-|.. ..+...+++..... +.++..|+-.--| +.+......+..+.. +-+. .||||.-
T Consensus 2 ~ilf~GDv~g~~G~~~~~~~l~~lr~~~--d~vi~nge~~~~G~g~~~~~~~~l~~~G~---Da~T--lGNHefD 69 (255)
T 1t70_A 2 RVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAGA---GCLT--LGNHAWH 69 (255)
T ss_dssp EEEEECCBBHHHHHHHHHHHHHHHGGGC--SEEEEECTBTTTTSSCCHHHHHHHHHHTC---SEEE--CCTTTTS
T ss_pred EEEEEeccCChHHHHHHHHHHHHHHhhC--CEEEECCCCccCCcCCCHHHHHHHHhCCC---CEEE--ecccccc
Confidence 478899997755 45556666654332 4566666555445 567778888777753 3333 4999965
No 318
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=64.92 E-value=3.5 Score=41.17 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=23.7
Q ss_pred CeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212 252 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (429)
Q Consensus 252 ~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~ 293 (429)
-++..||++++.+.+ ..++.++-.+. + + + +. ||||.
T Consensus 126 Lll~~GD~~~gs~~~~~~~g~~~~~~ln~lg--~-d-~-~~-GNHEf 166 (562)
T 2wdc_A 126 LVLDGGDTWTNSGLSLLTRGEAVVRWQNLVG--V-D-H-MV-SHWEW 166 (562)
T ss_dssp EEEECSCCSSSSHHHHHHTTHHHHHHHHHHT--C-C-E-EC-CSGGG
T ss_pred EEEeCCCCCCcchhhhhhCCHHHHHHHHhhC--C-c-E-Ee-cchhc
Confidence 466789999976643 35566665554 2 3 3 47 99995
No 319
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=64.91 E-value=12 Score=26.83 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
...+..+...|...-..|+|++|+.+|..+++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556677777777888888888888777765
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.80 E-value=16 Score=39.08 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--------------------CC--CHHHHHHHHHHHHHhhCHHHHHHH
Q 014212 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-N--------------------SQ--NAVYYANRAFAHTKLEEYGSAIQD 70 (429)
Q Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~--------------------p~--~~~~~~~lg~~~~~~g~~~~A~~~ 70 (429)
+..-|-+|.++...|++++|..+|++|-.- . +. ....|.....++.+.+-++-+++.
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 444588999999999999999999987521 0 11 124677888999999999999999
Q ss_pred HHHHHHhC-CCChH----HHHHHHHHHHH
Q 014212 71 ASKAIEID-PRYPK----GYYRRGAAYLA 94 (429)
Q Consensus 71 ~~~al~~~-p~~~~----~~~~la~~~~~ 94 (429)
.+.|++.- +++.. .|.++-.+...
T Consensus 920 A~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 920 SLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 99999754 44443 44444444433
No 321
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.64 E-value=12 Score=26.57 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
..+..+...|...-+.|+|++|+.+|.++++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666777777777776666654
No 322
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.13 E-value=8.1 Score=37.03 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
-..++..+|..|.+.|++++|.+.|.++...-.. ..+.+..+..++...+++..|...+.++-.+-
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999876432 35778888899999999999999999997763
No 323
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=62.22 E-value=14 Score=26.72 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212 84 GYYRRGAAYLAMGKFKEALKDFQQVK 109 (429)
Q Consensus 84 ~~~~la~~~~~~g~~~eA~~~~~~al 109 (429)
.+-+.|..+...|+|++|+++.++|.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455666666666666666555554
No 324
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=61.60 E-value=21 Score=30.22 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=40.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHhhCHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-----YANRAFAHTKLEEYG 65 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~~g~~~ 65 (429)
....+...+.+|..++.+++|.+|.+.+..|++..|..... +..+--+-+-+|+..
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44566788899999999999999999999999998876432 222333345566644
No 325
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.84 E-value=33 Score=34.52 Aligned_cols=115 Identities=9% Similarity=-0.097 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY----ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (429)
....+.......+.+.|...+.+..+...-+.... ..+|.-.+..+...++...+.++.....++...-...+.++
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH
Confidence 34455666677789999999988765444433322 22333333344355777778777665444433444445554
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (429)
..|+++.|...|.+.-.-....+.+.+.++..+..+|+.
T Consensus 297 -r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~ 335 (618)
T 1qsa_A 297 -GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE 335 (618)
T ss_dssp -HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred -HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence 569999999999776554445677889999988887773
No 326
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=60.33 E-value=9.5 Score=33.58 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=41.6
Q ss_pred ceEEEccCCCCH--HHHHHHHHHcCCCCCCCCeEEcc-ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212 223 HFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNG-DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (429)
Q Consensus 223 ~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~lG-D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~ 294 (429)
++..+||+-|.- ..+...+.+..... +.+++.| |....-..+.+....+..+.. +-+ -.||||.-
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~~~--d~vi~ngen~~~G~g~~~~~~~~l~~~G~---D~~--T~GNHefD 69 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRDRY--DLVIANGENAARGKGLDRRSYRLLREAGV---DLV--SLGNHAWD 69 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGGGC--SEEEEECTTTTTTSSCCHHHHHHHHHHTC---CEE--ECCTTTTS
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHhhC--CEEEEeCCCccCCCCcCHHHHHHHHhCCC---CEE--EeccEeeE
Confidence 478899997644 55666776665433 4455555 655433467788888877753 333 35999943
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.95 E-value=72 Score=25.75 Aligned_cols=29 Identities=3% Similarity=0.069 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 014212 17 LKALANEAFRAKKYSQAIDLYSQAIELNS 45 (429)
Q Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p 45 (429)
-+..|..++..|+|=+|=+.++.+....+
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~ 63 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYG 63 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence 34455555555666666555555555443
No 328
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.66 E-value=84 Score=26.40 Aligned_cols=84 Identities=5% Similarity=-0.129 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212 31 SQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (429)
Q Consensus 31 ~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~ 106 (429)
++++..|...-. .+|.....|..++..+ ..+...++.+.|....... -..+..|...|..+...|++.+|.+.|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555544321 2333455666666654 2333668888888777654 3467778888999999999999999999
Q ss_pred HHHHhCCCC
Q 014212 107 QVKKLSPND 115 (429)
Q Consensus 107 ~al~~~p~~ 115 (429)
.+++....-
T Consensus 140 ~GI~~~A~P 148 (202)
T 3esl_A 140 LGAENNCRP 148 (202)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 999987554
No 329
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=56.03 E-value=23 Score=25.13 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=24.9
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
....+..+...|...-..|+|++|+.+|..+++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777778778888888888888877765
No 330
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=55.99 E-value=24 Score=26.94 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 41 (429)
...+..+...|...-..|+|++|+.+|..++
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4455556666666666666666666665554
No 331
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=54.59 E-value=1.1e+02 Score=33.01 Aligned_cols=81 Identities=12% Similarity=-0.048 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKV 122 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l 122 (429)
..+..+-.+|.+.|+.++|...|....+. -.-+...|..+-..|.+.|+.++|.+.|++..+.. |+.. .+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv-TYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL-SYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-HHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH-HHHHH
Confidence 34777888999999999999999765432 13367889999999999999999999999998753 5533 33333
Q ss_pred HHHHHHHH
Q 014212 123 KECEKAVK 130 (429)
Q Consensus 123 ~~~~~~~~ 130 (429)
-.++...+
T Consensus 207 I~glcK~G 214 (1134)
T 3spa_A 207 LQCMGRQD 214 (1134)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhCC
Confidence 33444444
No 332
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=53.93 E-value=23 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 42 (429)
...+..+...|...-..|+|++|+.+|..+++
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555667777777777777777777776654
No 333
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=53.76 E-value=34 Score=28.87 Aligned_cols=31 Identities=19% Similarity=-0.031 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
..+.+|..++..++|.+|.+++..|+..-|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3444555555555555555555555555443
No 334
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=53.75 E-value=11 Score=37.32 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=36.5
Q ss_pred eEEEccCCCCH--------------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhh
Q 014212 224 FTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKC 278 (429)
Q Consensus 224 ~~v~GDihG~~--------------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~ 278 (429)
+...-|+||.+ ..+..++++.....+..-++..||.+...+.+ ..++.++-.+.
T Consensus 6 ILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~n~llldaGD~~qGs~~~~~~~g~~~i~~mN~lg- 84 (530)
T 4h1s_A 6 ILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR- 84 (530)
T ss_dssp EEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHTTHHHHHHHHHTT-
T ss_pred EEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhCcCeEEEEeCCcccchHHHHHhCChHHHHHHhccC-
Confidence 56677999754 34444555432222222355579999865532 34455554443
Q ss_pred hCCCeEEEecCCccc
Q 014212 279 MCPSAIYLSRGNHES 293 (429)
Q Consensus 279 ~~p~~~~~lrGNhe~ 293 (429)
.+ .+..||||.
T Consensus 85 --yD--a~~lGNHEF 95 (530)
T 4h1s_A 85 --YD--AMALGNHEF 95 (530)
T ss_dssp --CC--EEECCGGGG
T ss_pred --CC--EEEEchhhh
Confidence 23 345699995
No 335
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=53.45 E-value=1e+02 Score=29.15 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=63.5
Q ss_pred CcccHhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----C
Q 014212 7 ENSSVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----D 78 (429)
Q Consensus 7 ~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~ 78 (429)
.....+-+.....+-..++..| +|.-|+..+-..-++.|.... ..++..|.+|+.. .
T Consensus 250 ~tds~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~~~L~~~AI~sa~~~Y~ 314 (550)
T 3u84_A 250 HTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYR 314 (550)
T ss_dssp SCBCHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTC---------------CCHHHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCC---------------CCHHHHHHHHHHHHHHHhc
Confidence 3444555555566666777766 455566666665555554211 1244445555432 3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 014212 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVK 123 (429)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~ 123 (429)
..+...|-.+|-.+++.+++.+|+.++..|-.. ..++.+++..+-
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~ 365 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 365 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 457788889999999999999999998877653 234455554443
No 336
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.67 E-value=1e+02 Score=25.86 Aligned_cols=69 Identities=6% Similarity=-0.016 Sum_probs=40.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 79 (429)
+|.-...|...+..+ ..+...++.+.|.-... +....+..|...|..+...|++++|...|+..++...
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444455555555443 12224556666655554 3445566666777777777777777777777776543
No 337
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=52.61 E-value=20 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 43 (429)
........+|+.+...|+|+.|+.+|+.+++.
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34556678899999999999999999998863
No 338
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.50 E-value=28 Score=25.42 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (429)
Q Consensus 86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (429)
..+|..+...|+++.|+.+|-+|+...|.-.+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 346667777777777777777777776664443
No 339
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=48.63 E-value=85 Score=29.06 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=54.1
Q ss_pred cHhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC
Q 014212 10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRY 81 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~ 81 (429)
..+-+.....+-..++..|. |.-|+..+-..-++.|... ...++..|.+|+.. ...+
T Consensus 231 s~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~g---------------r~~~l~L~~~AI~sa~~yY~n~H 295 (472)
T 3re2_A 231 SIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPG---------------RPPAEELFKEAITVAKREYSDHH 295 (472)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT---------------SCCHHHHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCC---------------CCCHHHHHHHHHHHHHHHhccCC
Confidence 33444444555566666653 4445555555544444421 11255555555543 3457
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
...|-.+|-.+++.+++.+|+.++..|-..
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 788889999999999999999998877653
No 340
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=48.31 E-value=27 Score=25.44 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNA 48 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 48 (429)
.+|..+..+|+++.|+.+|-+|+...|.-.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 578888888888888888888887776643
No 341
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=47.54 E-value=31 Score=35.05 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
.+.....|......|+|.-|.+....++..+|++.++...++.++.+++.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666666666666654
No 342
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=46.35 E-value=78 Score=22.62 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 43 (429)
.++..+...|..+++.++|.+|...++++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 55666777777777777777777777777654
No 343
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.13 E-value=2.1e+02 Score=27.18 Aligned_cols=69 Identities=7% Similarity=-0.100 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CC-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH
Q 014212 49 VYYANRAFAHTKLEEYGSAIQDASKAIEI-DP-R----YPKGYYRRGAAYLAMGKFKEALKDFQQVKK---LSPNDPD 117 (429)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p-~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~p~~~~ 117 (429)
.....++.++...|++.+|...+.....- .- . -.+.+.....+|...+++.+|...+.++.. -.+.++.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 34467899999999999999988887532 11 1 245777888899999999999999998743 2345554
No 344
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=42.12 E-value=1.5e+02 Score=28.08 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCCh
Q 014212 11 VSRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRYP 82 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 82 (429)
.+-+.....+=..++..| +|.-|+..+-..-++.|.... ..++..|++|+.. .....
T Consensus 239 ~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hv 303 (489)
T 4gq4_A 239 LELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHI 303 (489)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCS
T ss_pred HHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcc
Confidence 334444555555566555 455666666666666655411 1334555555543 34567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 014212 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKEC 125 (429)
Q Consensus 83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~ 125 (429)
..|..+|-.++..+++.+|+..+..|-.. ..++.+.+..+..+
T Consensus 304 YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 88889999999999999999999888653 34555665544433
No 345
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=38.67 E-value=52 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=9.3
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 014212 93 LAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 93 ~~~g~~~eA~~~~~~al~ 110 (429)
-+.|++++|+..|.++++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 455555555555554444
No 346
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=43.68 E-value=7 Score=39.87 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 014212 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62 (429)
Q Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 62 (429)
.....|..++..|+|..|.+..+.++..+|++..+...++.+|.++|
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~ 509 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLG 509 (668)
Confidence 33444455555555555555555555555555555555555555544
No 347
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.20 E-value=50 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.049 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 014212 65 GSAIQDASKAIEI 77 (429)
Q Consensus 65 ~~A~~~~~~al~~ 77 (429)
++|++...+|++.
T Consensus 9 ~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 9 DMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566666666554
No 348
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.09 E-value=1e+02 Score=28.51 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 33 AIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 33 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
++..|.+|+.. +-.....|..+|-++++.+++.+|+.++..|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 78888888874 334566788899999999999999999988754
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.68 E-value=1.8e+02 Score=23.40 Aligned_cols=60 Identities=7% Similarity=-0.094 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHHH-HH--HHHHHcCCHHHHHHHHHHHHHh
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYR-RG--AAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~-la--~~~~~~g~~~eA~~~~~~al~~ 111 (429)
+.-|..++..|+|=+|-+.++.+-...+.. ...+.+ +| ..+...|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556777888999999999999998776544 233444 43 3455679999999999999874
No 350
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.56 E-value=74 Score=30.56 Aligned_cols=63 Identities=11% Similarity=-0.037 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC--C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCC
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNS--Q--------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY 81 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 81 (429)
.+-..|++.++...+...++..-...+ . -...++.+|..++..++|.+|.+++..|+.. -|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 444678899999888887765433322 1 2567888999999999999999999999998 6654
No 351
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=33.41 E-value=39 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 52 ANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
..+|.=|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4456666677777777777777664
No 352
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=33.31 E-value=67 Score=31.53 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=22.2
Q ss_pred CceEEEccCC---CCHHHHHHHHHHcCCCCCCCCeEEccccc
Q 014212 222 KHFTVCGDVH---GQFYDLLNIFELNGLPSEENPYLFNGDFV 260 (429)
Q Consensus 222 ~~~~v~GDih---G~~~~l~~~l~~~~~~~~~~~~~~lGD~v 260 (429)
.++.++||.+ |.+..+..+.+ ...+-+|++||+|
T Consensus 117 ~rfa~~sc~~~~~g~~~~~~~ia~-----~~~D~vlhlGD~i 153 (527)
T 2yeq_A 117 MTFAFASCQQYEHGYYTAYKHMAK-----EKLDLVFHLGDYI 153 (527)
T ss_dssp EEEEEECCCCGGGCCCHHHHHHTT-----SCCSEEEECSCSS
T ss_pred eEEEEEecCCCCCCccHHHHHHHh-----cCCCEEEecCCcc
Confidence 3578888876 44555444432 1345699999999
No 353
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.07 E-value=72 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 88 RGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 88 la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
.|.-.-..|++++|+..|..+++.
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445667777766666666653
No 354
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.86 E-value=2.9e+02 Score=24.90 Aligned_cols=119 Identities=13% Similarity=-0.014 Sum_probs=61.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Q 014212 21 ANEAFRAKKYSQAIDLYSQAIEL----NS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRYPKGYYRRG 89 (429)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la 89 (429)
-......|+|-+|-+.|+-.... .. +-...++.-+..+.+.|++..|.+...-.++. .|-+.+..-++.
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445556666666665554432 11 11234445556667777777766654333332 223444555566
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212 90 AAYLAMGKFK-EALKDFQQVKKLS-------PNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (429)
Q Consensus 90 ~~~~~~g~~~-eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 141 (429)
.++.....-+ +=....++|++.. -.+|+.+..+|..+...++ +.+|...+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~--~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF--VYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC--HHHHHHHH
Confidence 6655543211 1123334444322 2478888888888766554 44554433
No 355
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.55 E-value=3.4e+02 Score=25.13 Aligned_cols=89 Identities=7% Similarity=-0.072 Sum_probs=61.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHhC---------------CCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------C
Q 014212 23 EAFRAKKYSQAIDLYSQAIELN---------------SQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEI-------D 78 (429)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~---------------p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~ 78 (429)
+.....+.++|++.+++....- -.. ..+...++..|...++.++|....+++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678999999988764321 011 344567788899999999999999888643 1
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 79 PR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 79 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
|. ....|...+..|...+++.++....-.++..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 11 1234445567778889998888887777763
No 356
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.20 E-value=95 Score=21.75 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=11.0
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 014212 91 AYLAMGKFKEALKDFQQVKK 110 (429)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~ 110 (429)
-.-..|++++|+..|..+++
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33455666666555555554
No 357
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.17 E-value=3.4e+02 Score=24.59 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=62.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----C----HHH--HHHHHHHHHHhhCHHHHH-----HHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----N----AVY--YANRAFAHTKLEEYGSAI-----QDASKA 74 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~----~~~--~~~lg~~~~~~g~~~~A~-----~~~~~a 74 (429)
..+........|..++..|++++|+..|+.++..-|- + ..+ +..++.-|...=..+.+. +.-.+.
T Consensus 110 ~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~ 189 (325)
T 3mv2_A 110 GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRM 189 (325)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3455666788999999999999999999999875331 1 111 111111111100011100 011122
Q ss_pred HHh---------CCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212 75 IEI---------DPRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (429)
Q Consensus 75 l~~---------~p~~~~~~~~la-~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (429)
+++ .|.+...-.+.| ....+.++|..|....++.+++.|....+.
T Consensus 190 lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~ 244 (325)
T 3mv2_A 190 LELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE 244 (325)
T ss_dssp HHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence 221 121111122223 356688999999999999999999765543
No 358
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=28.07 E-value=94 Score=22.35 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHh
Q 014212 65 GSAIQDASKAIEI 77 (429)
Q Consensus 65 ~~A~~~~~~al~~ 77 (429)
+.|+....+|++.
T Consensus 13 ~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 13 TAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 359
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.91 E-value=1.6e+02 Score=21.16 Aligned_cols=27 Identities=11% Similarity=0.088 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 014212 19 ALANEAFRAKKYSQAIDLYSQAIELNS 45 (429)
Q Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~p 45 (429)
..|..++..|+|=+|=+.++.+....|
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345555666666666666666555553
No 360
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.60 E-value=1.4e+02 Score=25.56 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (429)
.++|.-...|...+... +.+...|.-... +.-..+..|...|..+...|++++|...|+..++..
T Consensus 114 knD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
No 361
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.95 E-value=2.4e+02 Score=22.41 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=0.0
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
.++|.-...|...+... +++.+.|.-... +....+..|...|..+...|++++|.+.|+..++....-.+-+
T Consensus 65 knD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp TTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Q ss_pred HHHHHHHHH
Q 014212 86 YRRGAAYLA 94 (429)
Q Consensus 86 ~~la~~~~~ 94 (429)
...-..+..
T Consensus 139 ~~~~~~F~~ 147 (152)
T 4a1g_A 139 QQQYRLFQT 147 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 362
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=26.49 E-value=96 Score=22.99 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 41 (429)
..++......|....+.|+|++|.+.++++-
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566777777888888888888888777763
No 363
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=25.88 E-value=1e+02 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014212 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (429)
Q Consensus 11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 41 (429)
..++......|....+.|+|++|.+.++++-
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566777778888888888888888877763
No 364
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.61 E-value=2.6e+02 Score=22.46 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (429)
Q Consensus 8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (429)
.++|.-...|...+... +.+.+.|..... +....+..|...|..+...|++.+|.+.|+.+++....-.+-+
T Consensus 60 knD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp TTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q ss_pred HHHHHHHHH
Q 014212 86 YRRGAAYLA 94 (429)
Q Consensus 86 ~~la~~~~~ 94 (429)
...-..+..
T Consensus 134 ~~~~~~F~~ 142 (164)
T 2wvi_A 134 QSQHRQFQA 142 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 365
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.34 E-value=96 Score=23.47 Aligned_cols=14 Identities=43% Similarity=0.259 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHh
Q 014212 64 YGSAIQDASKAIEI 77 (429)
Q Consensus 64 ~~~A~~~~~~al~~ 77 (429)
.+.|+....+|++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666543
No 366
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.84 E-value=3.9e+02 Score=24.15 Aligned_cols=108 Identities=10% Similarity=0.122 Sum_probs=62.1
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CH----HH--HHHHHHHHH-----Hh--hCHHH-HHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NA----VY--YANRAFAHT-----KL--EEYGS-AIQDA 71 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~----~~--~~~lg~~~~-----~~--g~~~~-A~~~~ 71 (429)
..+........|..++..|++++|+..|+.++..-|- +. .+ +..++.-|. ++ .+... ..+..
T Consensus 98 ~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~ 177 (320)
T 3mkr_B 98 KLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQ 177 (320)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhH
Confidence 4455666789999999999999999999999986542 21 11 111111111 11 11000 00112
Q ss_pred HHHHHh---------CCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212 72 SKAIEI---------DPRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (429)
Q Consensus 72 ~~al~~---------~p~~~~~~~~la-~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (429)
.+.+++ .|.+...-.+.| ....+.++|..|...-++.+++.|....
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 222322 222222222223 3566889999999999999999886443
No 367
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=23.33 E-value=1.2e+02 Score=22.67 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=24.8
Q ss_pred cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014212 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (429)
Q Consensus 10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 41 (429)
+..++......|....+.|+|++|.+.++++-
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777788888888889988888887763
No 368
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.76 E-value=2.2e+02 Score=26.95 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCChHHHHHH
Q 014212 32 QAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRR 88 (429)
Q Consensus 32 ~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 88 (429)
.++..|++|+.. .-.....|..+|-.+++.+++.+|+.++..|-.. ..++.+.|-.+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~ 349 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEF 349 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHH
Confidence 367788888874 3345667888899999999999999999888543 23455555444
No 369
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.03 E-value=1.5e+02 Score=28.02 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212 32 QAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (429)
Q Consensus 32 ~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (429)
.++..|.+|+.. +-.....|..+|-++++.+++.+|+.++..|-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 378888888864 334567788899999999999999999887754
No 370
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=21.75 E-value=1.6e+02 Score=28.28 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHcCCCCCCCCeEEccccccCCCC------------------c-HHHHHHHHH--hh-hhCCCeEEEecC
Q 014212 232 GQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF------------------S-VEVILTLFA--FK-CMCPSAIYLSRG 289 (429)
Q Consensus 232 G~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~------------------s-~e~~~~l~~--lk-~~~p~~~~~lrG 289 (429)
=.++-|..+++........+.+|++|.+||.-.. + .+++..+++ +. +...-+|++++|
T Consensus 163 l~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~~il~~l~~~t~VVlVPS 242 (460)
T 3flo_A 163 FSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPS 242 (460)
T ss_dssp CCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTHHHHTTSCTTSEEEEECC
T ss_pred cChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 3478888888877543224569999999986522 1 133333321 11 123478999999
Q ss_pred Ccccc
Q 014212 290 NHESK 294 (429)
Q Consensus 290 Nhe~~ 294 (429)
+||..
T Consensus 243 ~rD~~ 247 (460)
T 3flo_A 243 TKDAI 247 (460)
T ss_dssp TTBTT
T ss_pred ccccc
Confidence 99975
No 371
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=21.70 E-value=1.3e+02 Score=22.87 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014212 12 SRAEELKALANEAFRAKKYSQAIDLYSQA 40 (429)
Q Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 40 (429)
.++......|....+.|+|++|.+.++++
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666667777777777766665
No 372
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.52 E-value=2.1e+02 Score=27.15 Aligned_cols=31 Identities=16% Similarity=-0.036 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
...++..+|.+|..+|++++|.+..++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3457888999999999999999999999974
No 373
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.00 E-value=2.2e+02 Score=27.47 Aligned_cols=32 Identities=9% Similarity=-0.115 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (429)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 112 (429)
...++..+|.+|..++++++|....++++...
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34578889999999999999999999999763
No 374
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.88 E-value=1.7e+02 Score=22.09 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (429)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (429)
..+++|..+..++|+++.. |.-...+.-|.+.+..+++++.+..+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3456777777777776541 22222233345555566666666543
No 375
>2vy8_A Polymerase basic protein 2; viral protein, transcription, mRNA capping, mitochondrion, mRNA processing; 1.2A {Influenza a virus} PDB: 2vy7_A*
Probab=20.78 E-value=65 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCCCCCcEEEEEeeccccccCceeecCCeEEEEc
Q 014212 384 PSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVF 417 (429)
Q Consensus 384 ~~~~~~~~~~iir~h~~~~~g~~~~~~~~~~t~f 417 (429)
-+.||.|.-|||||..++ |.++.-.+++||-
T Consensus 102 l~vrGsGmrilVRgnSPv---FnYNk~Tkrlti~ 132 (157)
T 2vy8_A 102 VNVRGSGMRILVRGNSPV---FNYNKTTKRLTIL 132 (157)
T ss_dssp ECC---CEEEESSSCCSS---EEEETTTTEEEET
T ss_pred EEeccCceEEEEeCCCcc---cccCccceeeeee
Confidence 368999999999999986 4555567788874
No 376
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.34 E-value=1.9e+02 Score=27.53 Aligned_cols=15 Identities=7% Similarity=-0.177 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHh
Q 014212 117 DAAQKVKECEKAVKK 131 (429)
Q Consensus 117 ~~~~~l~~~~~~~~~ 131 (429)
.++..++.++...++
T Consensus 191 aa~allarvyL~~~~ 205 (454)
T 3myv_A 191 AARALLARIYLYHDD 205 (454)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccc
Confidence 355555666655555
No 377
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.01 E-value=2.4e+02 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (429)
Q Consensus 82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 111 (429)
..++..+|.+|.-+|++++|....++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 457888999999999999999999999874
No 378
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=24.95 E-value=23 Score=36.09 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (429)
Q Consensus 85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (429)
....|......|+|.-|.+....++..+|++.++...++.++.+++.
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 33444444455555555555555555555555555555555555553
Done!