BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014213
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 46 QELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
++L++EGN+LF+ D+GG D + L N AAC+++ L +Y +A
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLK--LEDYDKAE 85
Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
E + A+E KAL +R++ E L RLD A D+ ++ EPKN
Sbjct: 86 TEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 44 MSQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
++QE K +GN+ F+K D+ P N I L SN AAC + L E+ R
Sbjct: 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----LYSNRAACLTK--LMEFQR 65
Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE 157
A+ +C+ + + + K +++A C A+ A R L +P N A E
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 47 ELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
+LK GN F ++ P + SN++ACY+ G + + I
Sbjct: 23 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV----FYSNISACYISTG--DLEKVIE 76
Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVKKE 165
ALE+ P +SKALL+RA E+L A D++ + LN + A I +++
Sbjct: 77 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD---FDGASIEPMLERN 133
Query: 166 LEKRGLRV 173
L K+ ++V
Sbjct: 134 LNKQAMKV 141
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 47 ELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
+LK GN F ++ P + SN++ACY+ G + + I
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV----FYSNISACYISTG--DLEKVIE 80
Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVKKE 165
ALE+ P +SKALL+RA E+L A D++ + LN + A I +++
Sbjct: 81 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD---FDGASIEPMLERN 137
Query: 166 LEKRGLRV 173
L K+ ++V
Sbjct: 138 LNKQAMKV 145
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
N+A C+++ L + AI CN ALE+ K L +R + A+N +LA D VL
Sbjct: 201 NLAMCHLK--LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQ 258
Query: 148 KEPKNIMA----AEIAERVKKEL 166
P N A A +R++++L
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQL 281
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
N+ AC ++M S++ A+ C ALE+ P +KAL +RA+ ++ L D A D+
Sbjct: 278 NIGACKLKM--SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 148 KEPKN 152
P++
Sbjct: 336 IAPED 340
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
N+A C+++ L + AI CN ALE+ K L +R + A+N +LA D VL
Sbjct: 201 NLAMCHLK--LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 148 KEPKNIMA----AEIAERVKKEL 166
P N A A +R++++L
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQL 281
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 48 LKEEGNKLF--QKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
LK++GN+ F +K D P V Y SN++ACY+ +G + + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-----VFY--SNLSACYVSVG--DLKKVV 59
Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV 145
ALE+ P YSK LL+RA E L + A D++ +
Sbjct: 60 EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 48 LKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHE 107
+K +GN+ FQK D+ P++ + L SN AACY + L E+ A+ +
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTK--LLEFQLALKD 72
Query: 108 CNLALEVTPLYSKALLKRARCYEAL 132
C +++ P + K ++A EA+
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAM 97
Score = 32.0 bits (71), Expect = 0.74, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI 153
+YP+A+ A++ P +K RA CY L LA +D + EP I
Sbjct: 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI 84
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHI-----DVSYLRSNMAACYMQMGLS 99
++ELK + N F+ +D+ P N I ++YLR+ CY
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CY------ 56
Query: 100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
A+ + A+E+ Y K +RA AL + A RD TV+ +P +
Sbjct: 57 --GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHI-----DVSYLRSNMAACYMQMGLS 99
++ELK + N F+ +D+ P N I ++YLR+ CY
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGY---- 65
Query: 100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
A+ + A+E+ Y K +RA AL + A RD TV+ +P +
Sbjct: 66 ----ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHI-----DVSYLRSNMAACYMQMGLS 99
++ELK + N F+ +D+ P N I ++YLR+
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC---------- 70
Query: 100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
Y A+++ A+E+ Y K +RA AL + A RD TV+ +P +
Sbjct: 71 -YGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 122
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
S +LK EGN ++++ P N I YL SN AA Y G E +A
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---YL-SNRAAAYSASGQHE--KA 64
Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
+ LA V P YSK A +RL LA D+ + E
Sbjct: 65 AEDAELATVVDPKYSK----------AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114
Query: 165 ELEKRGLRVNDTVIELPPEYVEPP 188
+ KRGL IE EPP
Sbjct: 115 DAMKRGLETTKRKIEEANRGAEPP 138
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
+QELKE+GN+LF R + P V+ +N A CY++M E +A
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPE--QA 57
Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDV 142
+ +C ALE+ KA +C + D A ++
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
+QELKE+GN+LF R + P V+ +N A CY++M E +A
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPE--QA 62
Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDV 142
+ +C ALE+ KA +C + D A ++
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
N+AAC ++ L Y AI CN+ L KAL +R + L ++D A D
Sbjct: 235 NIAACLIK--LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 148 KEPKN 152
P +
Sbjct: 293 YAPDD 297
>pdb|2NPT|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2NPT|C Chain C, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2O2V|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 3 (Map3k3b-Phox)
Length = 106
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 288 EVISDRFPSCRAVLIKYRDEEGDLVTITTDEELR 321
+VI P +Y DE+GD +T+ +DEE++
Sbjct: 44 DVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 77
>pdb|1WI0|A Chain A, Solution Structure Of The Pb1 Domain Of Mouse Mitogen
Activated Protein Kinase Kinase 5 (Map2k5)
Length = 113
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 288 EVISDRFPSCRAVLIKYRDEEGDLVTITTDEELR 321
+VI P +Y DE+GD +T+ +DEE++
Sbjct: 46 DVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 79
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
++ LK EGN+ + + P N + N AA Y ++G Y A
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV----YFCNRAAAYSKLG--NYAGA 65
Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
+ +C A+ + P YSKA + +LN+ A L +P N
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
>pdb|2KTR|B Chain B, Nmr Structure Of P62 Pb1 Dimer Determined Based On Pcs
Length = 100
Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 294 FPSCR--AVLIKYRDEEGDLVTITTDEELRWA 323
FP+ R YRDE+GDLV ++DEEL A
Sbjct: 53 FPALRPGGFQAHYRDEDGDLVAFSSDEELTMA 84
>pdb|4IC7|E Chain E, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|B Chain B, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
Length = 126
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 288 EVISDRFPSCRAVLIKYRDEEGDLVTITTDEELR 321
+VI P +Y DE+GD +T+ +DEE++
Sbjct: 33 DVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 66
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTT 144
L +NM+ CY+ +G + A + L+ KAL +RA+ A +LD A D+
Sbjct: 65 LYANMSQCYLNIG--DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122
Query: 145 VLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVI 178
+L P A+ +A +K E+R + D+ +
Sbjct: 123 LLRNHP--AAASVVAREMKIVTERRAEKKADSRV 154
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
++E + EG + F K D P + + SN AA + L +P A
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAK--LMSFPEA 57
Query: 105 IHECNLALEVTPLYSKALLKRA 126
I +CN A+E P + +A +++A
Sbjct: 58 IADCNKAIEKDPNFVRAYIRKA 79
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
++E + EG + F K D P + S N AA + L +P A
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS----NRAAALAK--LMSFPEA 192
Query: 105 IHECNLALEVTPLYSKALLKRA 126
I +CN A+E P + +A +++A
Sbjct: 193 IADCNKAIEKDPNFVRAYIRKA 214
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
N+ Y + G +Y +AI ALE+ P +KA +R Y A D L
Sbjct: 48 NLGNAYYKQG--DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 148 KEPKNIMAAE 157
+P N A +
Sbjct: 106 LDPNNAKAKQ 115
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 311 LVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFENGN 370
TI E + E S +MQG++ ++ N PL E F N K D ++ +
Sbjct: 193 FATIAASGEKKKEEQSGKMQGTLEDQIISAN----PLLEAFGNAKTVRNDNSSRFGKFIR 248
Query: 371 VGNGKEADKGSCCIDDWIIEFAQLIVQL 398
+ G S I+ +++E +++ QL
Sbjct: 249 IHFGATGKLASADIETYLLEKSRVTFQL 276
>pdb|3HDJ|A Chain A, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
pdb|3HDJ|B Chain B, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
Length = 313
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 261 KKTVKLVFGEDIRVAQL--PLNSSLLQLREVISDRFPSCRAVLIKYRD----EEGDLVTI 314
+ T L G+ +R + SSL RE+ + RAV++++R+ E GDLV
Sbjct: 192 RSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDEALRRARAVVVEWREQTLSEAGDLVLA 251
Query: 315 TTDEEL 320
D L
Sbjct: 252 APDTGL 257
>pdb|1WJ6|A Chain A, Solution Structure Of Rsgi Ruh-024, A Pb1 Domain In Human
Cdna, Kiaa0049
Length = 101
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 259 EPKKTVKLVFGEDIR--VAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITT 316
EP+ T+ + F +I+ + P N++ + ++ F + IKY DEE + V+I +
Sbjct: 12 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSF-DLNTIQIKYLDEENEEVSINS 70
Query: 317 DEELRWAEASAEMQGS 332
E A A QG+
Sbjct: 71 QGEYEEALKMAVKQGN 86
>pdb|2BKF|A Chain A, Structure Of The Pb1 Domain Of Nbr1
Length = 87
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 259 EPKKTVKLVFGEDIR--VAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITT 316
EP+ T+ + F +I+ + P N++ + ++ F + IKY DEE + V+I +
Sbjct: 4 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSF-DLNTIQIKYLDEENEEVSINS 62
Query: 317 DEELRWAEASAEMQGS 332
E A A QG+
Sbjct: 63 QGEYEEALKMAVKQGN 78
>pdb|2G4S|A Chain A, Anomalous Substructure Of Nbr1pb1
Length = 86
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 259 EPKKTVKLVFGEDIR--VAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITT 316
EP+ T+ + F +I+ + P N++ + ++ F + IKY DEE + V+I +
Sbjct: 3 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSF-DLNTIQIKYLDEENEEVSINS 61
Query: 317 DEELRWAEASAEMQGS 332
E A A QG+
Sbjct: 62 QGEYEEALKMAVKQGN 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,249,915
Number of Sequences: 62578
Number of extensions: 433248
Number of successful extensions: 962
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 41
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)