Query 014213
Match_columns 429
No_of_seqs 313 out of 1967
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4151 Myosin assembly protei 100.0 7.6E-31 1.6E-35 280.1 12.2 372 1-376 1-406 (748)
2 KOG0553 TPR repeat-containing 99.9 3.7E-21 8E-26 187.8 13.9 125 40-170 76-200 (304)
3 cd06408 PB1_NoxR The PB1 domai 99.9 3.1E-21 6.7E-26 157.0 9.7 77 260-337 1-85 (86)
4 cd06401 PB1_TFG The PB1 domain 99.8 1.3E-20 2.9E-25 150.8 9.1 66 263-328 2-72 (81)
5 cd06402 PB1_p62 The PB1 domain 99.8 1E-19 2.3E-24 148.8 10.8 77 262-339 1-86 (87)
6 KOG4234 TPR repeat-containing 99.8 1E-17 2.2E-22 155.7 14.1 132 41-174 91-223 (271)
7 cd06407 PB1_NLP A PB1 domain i 99.7 1.4E-17 3E-22 135.5 10.6 77 262-338 1-81 (82)
8 smart00666 PB1 PB1 domain. Pho 99.7 1.9E-17 4.2E-22 133.6 10.4 78 261-338 1-81 (81)
9 PF00564 PB1: PB1 domain; Int 99.7 3.8E-17 8.3E-22 132.4 10.6 79 261-339 1-83 (84)
10 KOG0543 FKBP-type peptidyl-pro 99.7 1.7E-16 3.6E-21 160.7 16.8 141 27-171 192-343 (397)
11 KOG0547 Translocase of outer m 99.7 1.4E-16 3.1E-21 163.4 16.4 130 31-169 103-234 (606)
12 cd06396 PB1_NBR1 The PB1 domai 99.7 1.5E-16 3.2E-21 128.3 10.4 77 262-339 1-80 (81)
13 cd05992 PB1 The PB1 domain is 99.7 2.8E-16 6E-21 126.5 10.0 77 262-338 1-81 (81)
14 cd06404 PB1_aPKC PB1 domain is 99.7 3.6E-16 7.8E-21 125.7 10.0 68 262-329 1-70 (83)
15 cd06398 PB1_Joka2 The PB1 doma 99.7 5.7E-16 1.2E-20 128.4 11.5 77 263-339 2-88 (91)
16 KOG0548 Molecular co-chaperone 99.7 8.7E-16 1.9E-20 159.2 13.7 118 43-166 356-473 (539)
17 KOG4648 Uncharacterized conser 99.6 1E-15 2.2E-20 151.9 12.2 125 36-166 88-212 (536)
18 PLN03088 SGT1, suppressor of 99.6 9.2E-15 2E-19 149.2 16.4 118 45-168 2-119 (356)
19 PRK15359 type III secretion sy 99.6 1.9E-14 4.1E-19 128.6 15.8 115 47-167 26-140 (144)
20 KOG0548 Molecular co-chaperone 99.6 5.2E-15 1.1E-19 153.5 11.7 113 45-163 2-114 (539)
21 KOG0550 Molecular chaperone (D 99.5 5.1E-14 1.1E-18 142.5 11.5 124 41-167 245-368 (486)
22 TIGR02552 LcrH_SycD type III s 99.5 1.9E-12 4.2E-17 112.1 15.4 115 46-166 18-132 (135)
23 KOG0545 Aryl-hydrocarbon recep 99.5 1.1E-12 2.4E-17 125.5 14.4 143 24-170 159-316 (329)
24 TIGR00990 3a0801s09 mitochondr 99.4 2.5E-12 5.3E-17 139.7 18.1 105 42-153 124-228 (615)
25 KOG4626 O-linked N-acetylgluco 99.4 4.4E-13 9.5E-18 141.0 8.8 151 44-203 251-404 (966)
26 PRK15363 pathogenicity island 99.4 8.9E-12 1.9E-16 112.9 15.6 116 43-164 33-148 (157)
27 PRK11189 lipoprotein NlpI; Pro 99.4 5.7E-12 1.2E-16 125.3 15.6 105 44-154 63-167 (296)
28 KOG0551 Hsp90 co-chaperone CNS 99.4 1.6E-12 3.4E-17 128.9 11.0 111 43-155 79-189 (390)
29 KOG4626 O-linked N-acetylgluco 99.4 2.4E-12 5.2E-17 135.5 10.7 133 44-182 353-487 (966)
30 cd06397 PB1_UP1 Uncharacterize 99.4 4.5E-12 9.8E-17 101.1 9.6 66 263-328 2-68 (82)
31 TIGR00990 3a0801s09 mitochondr 99.4 8.9E-12 1.9E-16 135.3 15.0 128 44-177 330-457 (615)
32 PRK10370 formate-dependent nit 99.3 2.8E-11 6E-16 114.0 15.4 112 44-161 72-186 (198)
33 KOG0376 Serine-threonine phosp 99.3 2.1E-12 4.6E-17 133.2 7.9 122 43-170 2-123 (476)
34 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.1E-10 2.4E-15 97.7 14.8 113 46-161 3-118 (119)
35 cd06409 PB1_MUG70 The MUG70 pr 99.2 3.9E-11 8.6E-16 98.2 9.2 70 269-338 9-84 (86)
36 KOG1126 DNA-binding cell divis 99.2 1.3E-11 2.9E-16 130.9 7.5 132 45-182 421-554 (638)
37 PRK15359 type III secretion sy 99.2 4.9E-11 1.1E-15 106.6 9.8 106 66-180 14-119 (144)
38 KOG1155 Anaphase-promoting com 99.2 6.7E-11 1.4E-15 121.5 11.8 118 51-174 336-453 (559)
39 cd06403 PB1_Par6 The PB1 domai 99.2 8E-11 1.7E-15 93.8 9.1 74 263-338 2-78 (80)
40 PRK12370 invasion protein regu 99.2 2.3E-10 4.9E-15 123.3 14.6 118 49-172 342-460 (553)
41 KOG4642 Chaperone-dependent E3 99.2 8.3E-11 1.8E-15 112.4 9.8 100 43-148 8-107 (284)
42 TIGR02521 type_IV_pilW type IV 99.2 5.5E-10 1.2E-14 102.0 14.8 125 44-174 30-156 (234)
43 cd00189 TPR Tetratricopeptide 99.2 3.3E-10 7E-15 87.2 11.2 99 47-151 2-100 (100)
44 PF13414 TPR_11: TPR repeat; P 99.2 1.3E-10 2.7E-15 89.8 8.2 65 84-150 4-69 (69)
45 PRK02603 photosystem I assembl 99.2 1.2E-09 2.7E-14 99.7 16.2 107 43-152 33-153 (172)
46 PRK10370 formate-dependent nit 99.2 2.7E-10 5.8E-15 107.3 12.1 117 58-180 52-171 (198)
47 TIGR02521 type_IV_pilW type IV 99.2 1E-09 2.2E-14 100.2 15.2 124 45-174 65-190 (234)
48 PRK15179 Vi polysaccharide bio 99.2 3E-10 6.5E-15 125.0 13.6 130 45-180 86-215 (694)
49 PF13414 TPR_11: TPR repeat; P 99.1 1.3E-10 2.9E-15 89.7 7.1 67 44-116 2-69 (69)
50 PRK09782 bacteriophage N4 rece 99.1 7.1E-10 1.5E-14 126.4 15.8 125 50-181 581-707 (987)
51 PRK11189 lipoprotein NlpI; Pro 99.1 5.6E-10 1.2E-14 111.0 12.6 117 59-177 40-156 (296)
52 PRK12370 invasion protein regu 99.1 7.1E-10 1.5E-14 119.4 14.3 111 58-174 317-427 (553)
53 TIGR03302 OM_YfiO outer membra 99.1 1E-09 2.2E-14 104.1 13.6 113 44-159 32-155 (235)
54 KOG1126 DNA-binding cell divis 99.1 3.9E-10 8.5E-15 119.9 11.5 131 44-180 488-618 (638)
55 CHL00033 ycf3 photosystem I as 99.1 2.3E-09 5E-14 97.4 14.9 108 43-153 33-154 (168)
56 PRK09782 bacteriophage N4 rece 99.1 1.1E-09 2.5E-14 124.7 15.7 113 48-166 612-724 (987)
57 COG3063 PilF Tfp pilus assembl 99.1 1.1E-09 2.4E-14 104.3 12.7 134 43-182 33-170 (250)
58 KOG0547 Translocase of outer m 99.1 7.9E-10 1.7E-14 114.4 12.2 123 42-170 323-445 (606)
59 KOG0624 dsRNA-activated protei 99.1 7.9E-10 1.7E-14 110.4 11.0 107 45-157 38-144 (504)
60 KOG1125 TPR repeat-containing 99.1 3.2E-10 7E-15 119.1 8.5 127 38-170 414-559 (579)
61 PRK15174 Vi polysaccharide exp 99.0 2E-09 4.4E-14 118.3 14.2 122 50-177 217-342 (656)
62 PF13429 TPR_15: Tetratricopep 99.0 8.7E-10 1.9E-14 107.9 10.2 123 46-174 147-269 (280)
63 PRK15174 Vi polysaccharide exp 99.0 2.4E-09 5.2E-14 117.7 14.1 131 46-182 247-383 (656)
64 PF12895 Apc3: Anaphase-promot 99.0 7.3E-10 1.6E-14 89.4 7.4 84 57-145 1-84 (84)
65 TIGR02552 LcrH_SycD type III s 99.0 1.2E-09 2.7E-14 94.5 9.4 110 66-181 4-115 (135)
66 COG5010 TadD Flp pilus assembl 99.0 4.4E-09 9.6E-14 101.7 13.9 127 48-180 103-229 (257)
67 PLN02789 farnesyltranstransfer 99.0 6.5E-09 1.4E-13 105.0 15.2 116 45-166 71-189 (320)
68 PRK10803 tol-pal system protei 99.0 3.6E-08 7.8E-13 97.0 19.3 114 46-162 143-260 (263)
69 KOG1155 Anaphase-promoting com 99.0 6E-09 1.3E-13 107.4 14.0 123 46-174 365-487 (559)
70 PRK15331 chaperone protein Sic 99.0 1.1E-08 2.5E-13 93.3 13.5 116 44-166 36-151 (165)
71 cd06406 PB1_P67 A PB1 domain i 98.9 6.2E-09 1.3E-13 83.9 8.7 75 262-339 3-79 (80)
72 PLN02789 farnesyltranstransfer 98.9 7.7E-09 1.7E-13 104.4 11.7 132 55-195 47-181 (320)
73 KOG2076 RNA polymerase III tra 98.9 3E-08 6.4E-13 108.7 16.8 131 45-181 139-269 (895)
74 PRK11447 cellulose synthase su 98.9 8.9E-09 1.9E-13 119.8 13.4 125 50-180 274-412 (1157)
75 PF13432 TPR_16: Tetratricopep 98.9 4.8E-09 1E-13 80.2 7.5 64 88-153 2-65 (65)
76 TIGR02917 PEP_TPR_lipo putativ 98.9 2.6E-08 5.7E-13 108.7 16.3 124 45-174 125-248 (899)
77 PRK11447 cellulose synthase su 98.9 1.5E-08 3.3E-13 117.9 15.1 123 48-176 354-518 (1157)
78 PRK10049 pgaA outer membrane p 98.9 2.1E-08 4.5E-13 112.1 15.6 118 46-170 50-167 (765)
79 TIGR03302 OM_YfiO outer membra 98.9 3.6E-08 7.8E-13 93.5 15.1 128 46-174 71-224 (235)
80 KOG0624 dsRNA-activated protei 98.9 9E-09 2E-13 102.9 10.9 128 42-171 266-393 (504)
81 PRK11788 tetratricopeptide rep 98.8 5E-08 1.1E-12 98.8 14.9 129 44-174 140-270 (389)
82 TIGR02917 PEP_TPR_lipo putativ 98.8 3.9E-08 8.4E-13 107.3 14.8 122 45-174 703-824 (899)
83 PRK11788 tetratricopeptide rep 98.8 5E-08 1.1E-12 98.8 14.1 103 47-151 71-173 (389)
84 COG3063 PilF Tfp pilus assembl 98.8 7.2E-08 1.6E-12 92.1 13.0 121 48-174 72-194 (250)
85 PF13512 TPR_18: Tetratricopep 98.8 1.2E-07 2.6E-12 84.8 13.7 113 45-160 10-140 (142)
86 KOG1173 Anaphase-promoting com 98.8 4.3E-08 9.3E-13 103.1 11.9 117 47-165 416-535 (611)
87 COG4235 Cytochrome c biogenesi 98.8 1.4E-07 3E-12 93.3 14.8 118 44-165 155-273 (287)
88 PRK15179 Vi polysaccharide bio 98.8 7.9E-08 1.7E-12 106.1 14.6 105 43-153 118-222 (694)
89 PF13371 TPR_9: Tetratricopept 98.8 3.9E-08 8.5E-13 76.5 8.8 69 91-161 3-71 (73)
90 KOG0553 TPR repeat-containing 98.8 1.8E-08 3.9E-13 99.3 7.8 101 85-190 83-183 (304)
91 KOG4555 TPR repeat-containing 98.8 2.4E-07 5.1E-12 81.8 13.8 104 41-150 39-146 (175)
92 PF13432 TPR_16: Tetratricopep 98.8 2.2E-08 4.8E-13 76.5 6.6 64 50-119 2-65 (65)
93 KOG0550 Molecular chaperone (D 98.7 3.1E-08 6.8E-13 101.0 8.3 136 43-180 201-348 (486)
94 PRK10866 outer membrane biogen 98.7 4.2E-07 9.2E-12 88.4 15.9 127 45-174 32-182 (243)
95 PRK10049 pgaA outer membrane p 98.7 2.4E-07 5.2E-12 103.6 15.3 108 47-160 361-468 (765)
96 KOG4162 Predicted calmodulin-b 98.7 1.3E-07 2.7E-12 102.5 12.2 129 47-181 652-784 (799)
97 cd00189 TPR Tetratricopeptide 98.7 1.9E-07 4.2E-12 71.5 10.1 88 85-174 2-89 (100)
98 PF06552 TOM20_plant: Plant sp 98.7 1.4E-07 2.9E-12 87.3 10.5 100 61-164 7-125 (186)
99 KOG1125 TPR repeat-containing 98.7 5.8E-08 1.3E-12 102.3 9.1 133 43-177 317-522 (579)
100 PF13525 YfiO: Outer membrane 98.7 9.1E-07 2E-11 83.4 16.4 128 44-174 4-148 (203)
101 cd06410 PB1_UP2 Uncharacterize 98.7 1.5E-07 3.3E-12 79.1 9.7 75 263-337 14-96 (97)
102 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.5E-07 7.6E-12 95.2 14.5 68 45-115 75-142 (453)
103 PF14559 TPR_19: Tetratricopep 98.7 8.3E-08 1.8E-12 73.6 7.2 64 99-162 5-68 (68)
104 PLN03088 SGT1, suppressor of 98.7 1.1E-07 2.4E-12 97.3 10.2 94 86-181 5-100 (356)
105 PF13371 TPR_9: Tetratricopept 98.6 2.3E-07 5E-12 72.1 9.3 70 52-127 2-71 (73)
106 CHL00033 ycf3 photosystem I as 98.6 2.2E-07 4.7E-12 84.4 10.3 112 52-167 6-120 (168)
107 PRK14574 hmsH outer membrane p 98.6 4E-07 8.8E-12 102.3 14.6 125 44-174 33-157 (822)
108 PRK15363 pathogenicity island 98.6 2.1E-07 4.5E-12 84.6 9.9 90 85-176 37-126 (157)
109 COG4783 Putative Zn-dependent 98.6 7.2E-07 1.6E-11 92.8 14.3 125 45-175 306-430 (484)
110 COG1729 Uncharacterized protei 98.6 1.5E-06 3.2E-11 85.0 15.3 114 46-162 142-258 (262)
111 KOG1308 Hsp70-interacting prot 98.6 2.9E-08 6.2E-13 99.3 3.3 107 39-151 108-214 (377)
112 KOG2003 TPR repeat-containing 98.6 1.1E-07 2.4E-12 97.9 7.5 132 59-199 470-601 (840)
113 PF12688 TPR_5: Tetratrico pep 98.6 1.6E-06 3.5E-11 75.7 13.5 99 46-147 2-103 (120)
114 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.2E-07 4.8E-12 96.6 9.4 64 83-148 75-141 (453)
115 PF14559 TPR_19: Tetratricopep 98.5 1.6E-07 3.4E-12 72.0 6.1 67 55-127 1-67 (68)
116 PF13429 TPR_15: Tetratricopep 98.5 1.5E-07 3.3E-12 92.0 6.5 124 48-177 113-238 (280)
117 KOG2003 TPR repeat-containing 98.5 2.2E-07 4.8E-12 95.7 7.5 124 45-174 490-613 (840)
118 PF09976 TPR_21: Tetratricopep 98.5 1.4E-06 3E-11 77.5 11.7 129 43-175 9-140 (145)
119 COG4785 NlpI Lipoprotein NlpI, 98.5 2.7E-07 5.8E-12 87.7 7.4 106 43-154 63-168 (297)
120 PRK10153 DNA-binding transcrip 98.5 1.7E-06 3.6E-11 92.9 14.3 134 44-182 338-484 (517)
121 PRK11906 transcriptional regul 98.5 1.6E-06 3.4E-11 90.5 12.9 130 48-181 258-402 (458)
122 PF09976 TPR_21: Tetratricopep 98.5 5.4E-06 1.2E-10 73.7 14.6 98 45-146 48-145 (145)
123 COG4783 Putative Zn-dependent 98.5 3.3E-06 7.1E-11 88.0 14.6 113 48-166 343-455 (484)
124 PF13424 TPR_12: Tetratricopep 98.5 4.1E-07 8.9E-12 71.8 6.3 65 82-148 4-75 (78)
125 PRK02603 photosystem I assembl 98.5 2.5E-06 5.4E-11 77.9 12.4 85 82-168 34-121 (172)
126 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.4E-06 2.9E-11 72.8 9.8 88 85-174 4-97 (119)
127 COG5010 TadD Flp pilus assembl 98.4 1.3E-06 2.9E-11 84.7 10.8 120 49-174 70-189 (257)
128 KOG0546 HSP90 co-chaperone CPR 98.4 5.8E-07 1.2E-11 90.5 8.1 126 41-168 218-358 (372)
129 cd05804 StaR_like StaR_like; a 98.4 2.2E-06 4.7E-11 85.9 12.4 103 46-150 44-179 (355)
130 cd06395 PB1_Map2k5 PB1 domain 98.4 4.9E-07 1.1E-11 72.3 6.1 67 261-327 2-69 (91)
131 PF13424 TPR_12: Tetratricopep 98.4 1.4E-06 3.1E-11 68.7 8.4 70 43-114 3-75 (78)
132 KOG1310 WD40 repeat protein [G 98.4 1.2E-06 2.7E-11 91.8 9.9 114 39-156 368-482 (758)
133 KOG2002 TPR-containing nuclear 98.4 2.4E-06 5.2E-11 94.7 12.6 119 46-167 271-390 (1018)
134 KOG1173 Anaphase-promoting com 98.4 4.7E-06 1E-10 88.1 13.5 124 51-180 386-516 (611)
135 KOG4162 Predicted calmodulin-b 98.4 3.6E-06 7.7E-11 91.5 12.7 105 44-154 683-789 (799)
136 cd05804 StaR_like StaR_like; a 98.3 3.8E-06 8.1E-11 84.2 11.8 99 47-151 116-218 (355)
137 KOG1840 Kinesin light chain [C 98.3 4.7E-06 1E-10 88.9 12.9 128 45-174 241-388 (508)
138 COG2956 Predicted N-acetylgluc 98.3 8.2E-06 1.8E-10 81.6 13.6 124 47-172 143-268 (389)
139 KOG1128 Uncharacterized conser 98.3 1.2E-06 2.6E-11 94.7 7.5 120 50-175 490-609 (777)
140 TIGR00540 hemY_coli hemY prote 98.3 2E-05 4.2E-10 81.9 16.4 126 43-174 82-208 (409)
141 COG4235 Cytochrome c biogenesi 98.3 8.4E-06 1.8E-10 80.7 12.7 116 60-181 137-255 (287)
142 PRK14574 hmsH outer membrane p 98.3 7.8E-06 1.7E-10 92.1 14.1 114 48-168 105-218 (822)
143 KOG2076 RNA polymerase III tra 98.3 1.4E-05 3E-10 88.2 15.4 100 45-150 173-272 (895)
144 KOG2002 TPR-containing nuclear 98.3 8E-06 1.7E-10 90.7 13.5 119 43-166 305-427 (1018)
145 PRK14720 transcript cleavage f 98.3 1.1E-05 2.3E-10 91.0 14.1 115 44-166 30-163 (906)
146 KOG1840 Kinesin light chain [C 98.3 1E-05 2.2E-10 86.4 13.0 128 44-173 282-429 (508)
147 TIGR00540 hemY_coli hemY prote 98.3 1.6E-05 3.5E-10 82.5 14.4 126 44-174 262-391 (409)
148 PRK10747 putative protoheme IX 98.2 3.3E-05 7.1E-10 80.1 16.4 125 43-174 82-208 (398)
149 KOG1129 TPR repeat-containing 98.2 2E-06 4.3E-11 86.0 6.9 117 51-169 296-445 (478)
150 KOG1156 N-terminal acetyltrans 98.2 6.5E-06 1.4E-10 88.1 10.5 139 47-194 9-147 (700)
151 KOG3060 Uncharacterized conser 98.2 2.9E-05 6.3E-10 75.4 13.8 114 49-168 90-203 (289)
152 KOG0695 Serine/threonine prote 98.2 8.7E-06 1.9E-10 81.8 9.3 94 256-350 10-107 (593)
153 cd06399 PB1_P40 The PB1 domain 98.1 1.1E-05 2.3E-10 65.8 7.9 57 270-327 13-73 (92)
154 PF12895 Apc3: Anaphase-promot 98.1 4.6E-06 9.9E-11 67.1 4.3 75 99-174 3-79 (84)
155 COG2956 Predicted N-acetylgluc 98.0 7.1E-05 1.5E-09 75.0 13.3 122 42-170 177-299 (389)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 4.2E-05 9.1E-10 79.5 12.1 108 58-174 182-289 (395)
157 KOG1174 Anaphase-promoting com 98.0 2.5E-05 5.3E-10 80.3 10.1 112 43-160 298-409 (564)
158 PRK11906 transcriptional regul 98.0 5E-05 1.1E-09 79.5 12.3 92 58-155 317-408 (458)
159 PRK10747 putative protoheme IX 98.0 6.8E-05 1.5E-09 77.7 13.0 122 46-177 264-385 (398)
160 PF12688 TPR_5: Tetratrico pep 98.0 6.5E-05 1.4E-09 65.6 10.6 91 85-177 3-99 (120)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.5E-09 76.3 14.0 94 48-147 203-296 (395)
162 PF12968 DUF3856: Domain of Un 98.0 0.00027 5.8E-09 61.6 13.7 99 48-148 12-129 (144)
163 PRK10153 DNA-binding transcrip 98.0 8.6E-05 1.9E-09 79.9 13.3 87 61-154 400-488 (517)
164 KOG0543 FKBP-type peptidyl-pro 97.9 7.2E-05 1.6E-09 76.8 11.6 97 46-148 258-355 (397)
165 KOG1129 TPR repeat-containing 97.9 3E-05 6.6E-10 77.7 8.1 123 48-176 259-381 (478)
166 KOG3060 Uncharacterized conser 97.9 0.00022 4.7E-09 69.5 13.6 114 49-168 124-240 (289)
167 KOG1156 N-terminal acetyltrans 97.9 6.7E-05 1.5E-09 80.6 11.1 125 44-174 40-164 (700)
168 KOG1174 Anaphase-promoting com 97.9 0.00014 3E-09 75.0 12.5 142 44-195 333-510 (564)
169 KOG1128 Uncharacterized conser 97.9 2.5E-05 5.5E-10 84.7 7.6 76 99-174 499-574 (777)
170 COG4105 ComL DNA uptake lipopr 97.9 0.00058 1.2E-08 66.7 15.8 125 45-172 34-172 (254)
171 PF13428 TPR_14: Tetratricopep 97.8 3.9E-05 8.5E-10 54.6 5.3 42 120-161 2-43 (44)
172 PF04733 Coatomer_E: Coatomer 97.8 9E-05 1.9E-09 74.0 9.7 124 51-180 137-262 (290)
173 PF00515 TPR_1: Tetratricopept 97.8 3.5E-05 7.5E-10 51.3 4.5 32 120-151 2-33 (34)
174 KOG1127 TPR repeat-containing 97.8 6E-05 1.3E-09 84.1 8.6 129 44-174 491-651 (1238)
175 PF03704 BTAD: Bacterial trans 97.8 0.00096 2.1E-08 58.8 14.8 101 45-147 6-124 (146)
176 PRK10803 tol-pal system protei 97.8 0.0002 4.3E-09 70.6 11.2 90 84-175 143-239 (263)
177 cd06405 PB1_Mekk2_3 The PB1 do 97.8 0.00026 5.6E-09 56.2 9.3 74 262-338 1-77 (79)
178 PF13525 YfiO: Outer membrane 97.8 0.00096 2.1E-08 62.9 15.0 124 46-170 43-195 (203)
179 PRK14720 transcript cleavage f 97.7 0.00017 3.7E-09 81.5 11.4 97 47-148 67-178 (906)
180 PF12569 NARP1: NMDA receptor- 97.7 0.00057 1.2E-08 73.5 15.0 37 43-79 36-72 (517)
181 KOG4234 TPR repeat-containing 97.7 9.7E-05 2.1E-09 69.8 7.8 90 90-181 102-196 (271)
182 PF14938 SNAP: Soluble NSF att 97.7 0.00033 7.1E-09 69.3 11.5 124 43-168 112-247 (282)
183 PRK10866 outer membrane biogen 97.7 0.0023 5E-08 62.3 17.0 122 48-170 72-229 (243)
184 PF07719 TPR_2: Tetratricopept 97.7 9.8E-05 2.1E-09 48.7 5.2 33 120-152 2-34 (34)
185 KOG1127 TPR repeat-containing 97.7 0.00011 2.5E-09 81.9 8.5 116 46-167 563-678 (1238)
186 KOG0495 HAT repeat protein [RN 97.7 0.00019 4E-09 77.4 9.7 149 48-205 654-804 (913)
187 PF00515 TPR_1: Tetratricopept 97.7 7.8E-05 1.7E-09 49.6 4.5 33 84-118 2-34 (34)
188 PF13431 TPR_17: Tetratricopep 97.6 6.3E-05 1.4E-09 50.9 3.8 32 108-139 2-33 (34)
189 KOG4648 Uncharacterized conser 97.6 5.9E-05 1.3E-09 76.1 5.1 93 87-181 101-195 (536)
190 KOG4642 Chaperone-dependent E3 97.6 7.4E-05 1.6E-09 72.1 5.1 76 99-174 24-99 (284)
191 PF04733 Coatomer_E: Coatomer 97.6 0.00026 5.5E-09 70.8 8.3 93 60-158 182-275 (290)
192 PRK15331 chaperone protein Sic 97.5 0.00031 6.8E-09 64.4 8.0 88 86-175 40-127 (165)
193 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00051 1.1E-08 51.4 7.7 50 120-169 2-51 (53)
194 PF13428 TPR_14: Tetratricopep 97.5 0.00024 5.2E-09 50.5 5.6 41 85-127 3-43 (44)
195 KOG3785 Uncharacterized conser 97.5 0.00081 1.7E-08 68.3 11.2 113 51-166 63-232 (557)
196 KOG4555 TPR repeat-containing 97.5 0.00054 1.2E-08 60.9 8.6 86 87-174 47-136 (175)
197 COG0457 NrfG FOG: TPR repeat [ 97.5 0.0049 1.1E-07 53.1 14.5 117 45-167 95-216 (291)
198 cd06411 PB1_p51 The PB1 domain 97.5 0.0014 3E-08 52.9 9.6 66 273-339 9-77 (78)
199 KOG0495 HAT repeat protein [RN 97.4 0.0011 2.4E-08 71.6 11.6 115 52-168 591-734 (913)
200 PRK10941 hypothetical protein; 97.4 0.0015 3.3E-08 64.7 11.9 81 82-164 180-260 (269)
201 KOG1130 Predicted G-alpha GTPa 97.4 0.00046 9.9E-09 71.2 7.5 123 50-174 200-336 (639)
202 PF07719 TPR_2: Tetratricopept 97.3 0.00053 1.1E-08 45.1 5.2 32 85-118 3-34 (34)
203 COG4700 Uncharacterized protei 97.3 0.0049 1.1E-07 58.0 13.2 116 45-167 89-207 (251)
204 PF14938 SNAP: Soluble NSF att 97.3 0.0009 1.9E-08 66.2 8.9 130 42-174 32-176 (282)
205 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00048 1E-08 66.0 6.3 107 68-176 50-156 (297)
206 PF13431 TPR_17: Tetratricopep 97.2 0.00025 5.3E-09 48.0 2.7 34 67-106 1-34 (34)
207 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0096 2.1E-07 51.2 13.2 108 54-164 139-247 (291)
208 PF13181 TPR_8: Tetratricopept 97.2 0.00071 1.5E-08 44.7 4.3 33 120-152 2-34 (34)
209 KOG3785 Uncharacterized conser 97.2 0.002 4.3E-08 65.6 9.2 106 53-167 30-135 (557)
210 KOG1130 Predicted G-alpha GTPa 97.1 0.0025 5.5E-08 65.9 9.9 125 48-174 238-376 (639)
211 PF15015 NYD-SP12_N: Spermatog 97.1 0.014 3.1E-07 60.6 14.8 98 49-148 180-291 (569)
212 PF12569 NARP1: NMDA receptor- 97.0 0.011 2.4E-07 63.7 14.3 98 46-149 195-292 (517)
213 PF13512 TPR_18: Tetratricopep 97.0 0.0045 9.7E-08 55.6 9.3 71 48-121 50-135 (142)
214 KOG2376 Signal recognition par 97.0 0.0042 9E-08 66.6 10.2 104 46-154 13-145 (652)
215 PF10300 DUF3808: Protein of u 97.0 0.0053 1.2E-07 65.4 11.1 98 48-148 270-376 (468)
216 COG3118 Thioredoxin domain-con 97.0 0.017 3.6E-07 57.7 13.6 115 47-167 136-286 (304)
217 COG3071 HemY Uncharacterized e 96.8 0.039 8.5E-07 56.9 14.7 123 43-171 82-205 (400)
218 KOG0551 Hsp90 co-chaperone CNS 96.7 0.0082 1.8E-07 60.7 9.6 113 57-172 54-172 (390)
219 KOG4507 Uncharacterized conser 96.7 0.0029 6.3E-08 67.8 6.6 110 50-164 612-721 (886)
220 PRK04841 transcriptional regul 96.7 0.032 7E-07 63.2 15.5 124 48-173 455-593 (903)
221 PRK04841 transcriptional regul 96.7 0.025 5.5E-07 64.0 14.4 125 46-172 492-631 (903)
222 COG1729 Uncharacterized protei 96.7 0.013 2.8E-07 57.7 10.4 87 86-174 144-236 (262)
223 KOG1941 Acetylcholine receptor 96.6 0.0051 1.1E-07 62.8 7.2 131 48-180 125-273 (518)
224 KOG2376 Signal recognition par 96.6 0.03 6.6E-07 60.2 13.1 107 47-155 112-260 (652)
225 PF13181 TPR_8: Tetratricopept 96.6 0.0039 8.5E-08 41.1 4.3 31 85-117 3-33 (34)
226 KOG3606 Cell polarity protein 96.6 0.0027 5.8E-08 62.1 4.6 81 258-340 15-98 (358)
227 KOG3364 Membrane protein invol 96.5 0.016 3.5E-07 51.7 9.0 86 85-170 34-122 (149)
228 COG4700 Uncharacterized protei 96.5 0.018 3.8E-07 54.3 9.6 124 51-181 62-188 (251)
229 PF13174 TPR_6: Tetratricopept 96.5 0.0045 9.7E-08 40.2 4.2 33 120-152 1-33 (33)
230 KOG0545 Aryl-hydrocarbon recep 96.4 0.0074 1.6E-07 58.9 6.7 95 84-180 179-291 (329)
231 KOG0376 Serine-threonine phosp 96.4 0.0017 3.6E-08 68.2 2.4 86 87-174 8-93 (476)
232 KOG2796 Uncharacterized conser 96.4 0.034 7.3E-07 54.9 10.9 116 50-170 182-303 (366)
233 KOG3081 Vesicle coat complex C 96.4 0.085 1.8E-06 52.1 13.5 105 41-154 172-277 (299)
234 COG3071 HemY Uncharacterized e 96.3 0.059 1.3E-06 55.6 12.8 115 50-174 268-382 (400)
235 smart00028 TPR Tetratricopepti 96.3 0.0062 1.3E-07 37.3 3.7 31 121-151 3-33 (34)
236 PF10579 Rapsyn_N: Rapsyn N-te 96.3 0.031 6.6E-07 45.3 8.3 68 44-114 5-72 (80)
237 KOG2471 TPR repeat-containing 96.3 0.016 3.5E-07 61.2 8.5 123 46-170 241-386 (696)
238 PF06552 TOM20_plant: Plant sp 96.2 0.023 5.1E-07 53.0 8.6 69 100-168 6-84 (186)
239 KOG2796 Uncharacterized conser 96.2 0.04 8.6E-07 54.5 10.5 105 46-154 213-321 (366)
240 COG2976 Uncharacterized protei 96.2 0.1 2.3E-06 49.3 12.6 102 46-152 90-192 (207)
241 PRK10941 hypothetical protein; 96.2 0.043 9.4E-07 54.4 10.8 78 47-130 183-260 (269)
242 PLN03081 pentatricopeptide (PP 96.2 0.04 8.7E-07 61.1 11.7 115 48-168 429-543 (697)
243 KOG4814 Uncharacterized conser 96.1 0.042 9.1E-07 59.7 10.8 100 47-148 356-457 (872)
244 KOG4340 Uncharacterized conser 96.0 0.06 1.3E-06 54.1 10.7 103 54-166 19-121 (459)
245 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.029 6.3E-07 42.0 6.4 42 85-128 3-44 (53)
246 KOG3824 Huntingtin interacting 95.9 0.075 1.6E-06 53.6 10.8 116 42-163 113-233 (472)
247 PLN03077 Protein ECB2; Provisi 95.9 0.12 2.6E-06 58.7 13.9 108 46-163 555-667 (857)
248 PF14561 TPR_20: Tetratricopep 95.8 0.03 6.5E-07 46.4 6.7 67 104-170 7-75 (90)
249 PF04781 DUF627: Protein of un 95.8 0.076 1.6E-06 45.8 9.3 97 51-148 2-107 (111)
250 smart00028 TPR Tetratricopepti 95.8 0.014 3E-07 35.7 3.7 31 85-117 3-33 (34)
251 KOG3824 Huntingtin interacting 95.8 0.029 6.2E-07 56.4 7.6 77 87-165 120-196 (472)
252 PLN03218 maturation of RBCL 1; 95.8 0.22 4.7E-06 58.3 15.8 93 48-148 510-608 (1060)
253 PF13176 TPR_7: Tetratricopept 95.8 0.017 3.7E-07 39.2 4.2 28 121-148 1-28 (36)
254 KOG4340 Uncharacterized conser 95.7 0.026 5.6E-07 56.6 6.9 92 45-142 144-264 (459)
255 COG2912 Uncharacterized conser 95.7 0.066 1.4E-06 52.9 9.6 81 82-164 180-260 (269)
256 PLN03218 maturation of RBCL 1; 95.7 0.25 5.4E-06 57.8 15.9 114 49-168 583-699 (1060)
257 COG4976 Predicted methyltransf 95.7 0.017 3.6E-07 55.9 5.2 56 98-153 8-63 (287)
258 PLN03081 pentatricopeptide (PP 95.7 0.095 2.1E-06 58.2 12.0 115 45-168 391-509 (697)
259 PF04184 ST7: ST7 protein; In 95.6 0.067 1.5E-06 56.8 9.8 114 52-173 175-315 (539)
260 PF03704 BTAD: Bacterial trans 95.6 0.081 1.8E-06 46.5 8.9 64 43-112 60-123 (146)
261 PF09613 HrpB1_HrpK: Bacterial 95.6 0.83 1.8E-05 41.9 15.5 113 45-165 10-122 (160)
262 PF09986 DUF2225: Uncharacteri 95.5 0.18 3.9E-06 48.3 11.7 96 54-151 86-197 (214)
263 KOG2610 Uncharacterized conser 95.5 0.073 1.6E-06 54.2 9.1 95 47-143 105-233 (491)
264 KOG1308 Hsp70-interacting prot 95.5 0.0038 8.3E-08 63.2 -0.0 77 99-175 128-204 (377)
265 COG4105 ComL DNA uptake lipopr 95.4 0.52 1.1E-05 46.3 14.6 118 48-166 74-214 (254)
266 KOG2053 Mitochondrial inherita 95.4 0.17 3.7E-06 56.9 12.5 92 54-151 18-109 (932)
267 KOG2610 Uncharacterized conser 95.2 0.23 5E-06 50.7 11.5 69 99-167 151-223 (491)
268 PLN03077 Protein ECB2; Provisi 95.1 0.35 7.6E-06 55.0 14.3 115 48-168 592-706 (857)
269 PF13176 TPR_7: Tetratricopept 95.0 0.044 9.6E-07 37.1 4.2 25 86-112 2-26 (36)
270 KOG1586 Protein required for f 94.8 0.8 1.7E-05 44.7 13.6 124 48-173 116-251 (288)
271 KOG3081 Vesicle coat complex C 94.8 0.15 3.2E-06 50.5 8.6 123 50-174 113-262 (299)
272 PF13174 TPR_6: Tetratricopept 94.7 0.058 1.3E-06 34.8 4.1 31 85-117 2-32 (33)
273 PF10602 RPN7: 26S proteasome 94.6 0.57 1.2E-05 43.5 12.0 100 45-147 36-141 (177)
274 PF14561 TPR_20: Tetratricopep 94.5 0.24 5.3E-06 40.9 8.3 66 64-135 7-74 (90)
275 KOG1941 Acetylcholine receptor 94.5 0.16 3.5E-06 52.2 8.5 99 48-148 165-275 (518)
276 PF05843 Suf: Suppressor of fo 94.4 0.45 9.7E-06 47.2 11.4 101 48-153 4-104 (280)
277 PF10300 DUF3808: Protein of u 94.4 0.4 8.6E-06 51.2 11.7 104 58-167 246-354 (468)
278 PF02259 FAT: FAT domain; Int 94.1 1.6 3.5E-05 43.3 14.9 124 43-168 144-307 (352)
279 KOG2471 TPR repeat-containing 94.1 0.069 1.5E-06 56.6 5.0 86 45-132 283-382 (696)
280 COG4976 Predicted methyltransf 94.1 0.068 1.5E-06 51.8 4.6 60 54-119 4-63 (287)
281 KOG4507 Uncharacterized conser 94.1 0.16 3.5E-06 54.9 7.7 101 50-154 217-318 (886)
282 KOG1585 Protein required for f 94.0 1.9 4.1E-05 42.5 14.1 116 45-162 31-156 (308)
283 PF12862 Apc5: Anaphase-promot 93.9 0.29 6.2E-06 40.4 7.6 58 55-114 8-70 (94)
284 KOG0530 Protein farnesyltransf 93.8 0.73 1.6E-05 45.7 11.2 114 55-173 53-167 (318)
285 PF02259 FAT: FAT domain; Int 93.6 1 2.2E-05 44.8 12.3 106 46-151 185-341 (352)
286 PF13374 TPR_10: Tetratricopep 93.6 0.16 3.6E-06 34.2 4.7 29 84-114 3-31 (42)
287 COG3914 Spy Predicted O-linked 93.6 1.1 2.4E-05 48.7 12.9 106 51-162 73-185 (620)
288 KOG1915 Cell cycle control pro 93.3 1 2.2E-05 47.9 11.8 119 57-180 378-498 (677)
289 PF08631 SPO22: Meiosis protei 93.1 4.1 8.9E-05 40.2 15.5 106 42-150 32-152 (278)
290 PF13374 TPR_10: Tetratricopep 93.0 0.23 5E-06 33.5 4.7 30 119-148 2-31 (42)
291 KOG1915 Cell cycle control pro 93.0 0.97 2.1E-05 48.1 11.2 99 49-153 77-175 (677)
292 PF09986 DUF2225: Uncharacteri 92.9 0.67 1.5E-05 44.4 9.4 89 40-130 120-211 (214)
293 KOG2053 Mitochondrial inherita 92.8 1.5 3.3E-05 49.6 12.9 108 48-162 46-153 (932)
294 KOG1586 Protein required for f 92.6 1.2 2.5E-05 43.7 10.3 104 43-149 32-144 (288)
295 PF12862 Apc5: Anaphase-promot 92.5 1.4 3.1E-05 36.2 9.7 51 99-149 12-71 (94)
296 PF05843 Suf: Suppressor of fo 92.5 1.9 4.1E-05 42.7 12.2 105 48-158 38-146 (280)
297 PRK13184 pknD serine/threonine 92.4 0.86 1.9E-05 52.6 10.8 116 51-168 481-601 (932)
298 TIGR02561 HrpB1_HrpK type III 92.4 4.9 0.00011 36.6 13.5 109 46-162 11-119 (153)
299 PF14560 Ubiquitin_2: Ubiquiti 92.3 0.69 1.5E-05 37.6 7.4 66 275-342 18-85 (87)
300 KOG2396 HAT (Half-A-TPR) repea 92.1 1.7 3.7E-05 46.5 11.7 94 62-161 88-182 (568)
301 COG3898 Uncharacterized membra 92.1 1.7 3.6E-05 45.4 11.3 94 48-147 123-216 (531)
302 PF04184 ST7: ST7 protein; In 91.8 1.7 3.6E-05 46.6 11.3 60 84-145 260-321 (539)
303 COG3898 Uncharacterized membra 91.4 2.4 5.1E-05 44.4 11.6 96 54-152 197-296 (531)
304 COG2912 Uncharacterized conser 91.3 1.1 2.4E-05 44.5 8.8 75 49-129 185-259 (269)
305 KOG3364 Membrane protein invol 91.0 0.8 1.7E-05 41.1 6.8 77 48-128 35-114 (149)
306 PF13281 DUF4071: Domain of un 90.9 5.3 0.00011 41.6 13.7 66 50-118 184-259 (374)
307 PF12968 DUF3856: Domain of Un 90.7 1.1 2.4E-05 39.5 7.1 66 83-148 7-84 (144)
308 PF09613 HrpB1_HrpK: Bacterial 90.3 3.9 8.4E-05 37.6 10.8 86 84-171 11-96 (160)
309 COG3118 Thioredoxin domain-con 90.2 1.6 3.5E-05 43.9 8.9 53 89-143 140-192 (304)
310 KOG0529 Protein geranylgeranyl 89.9 2.9 6.3E-05 43.7 10.8 106 59-168 89-198 (421)
311 KOG1550 Extracellular protein 89.8 8.2 0.00018 42.1 14.8 106 48-163 291-406 (552)
312 COG0790 FOG: TPR repeat, SEL1 89.6 11 0.00024 36.7 14.4 108 46-160 110-230 (292)
313 PF07079 DUF1347: Protein of u 89.1 13 0.00027 39.8 14.7 98 43-143 377-519 (549)
314 cd01789 Alp11_N Ubiquitin-like 88.9 2.3 5.1E-05 34.5 7.6 70 271-342 11-83 (84)
315 KOG1070 rRNA processing protei 88.8 3.4 7.5E-05 49.0 11.3 115 48-169 1500-1616(1710)
316 COG3914 Spy Predicted O-linked 88.7 2.3 5E-05 46.3 9.3 122 56-182 41-173 (620)
317 PF10373 EST1_DNA_bind: Est1 D 88.5 1.6 3.6E-05 42.0 7.6 62 104-165 1-62 (278)
318 PF08424 NRDE-2: NRDE-2, neces 88.0 7.7 0.00017 39.2 12.3 91 66-160 6-106 (321)
319 KOG1585 Protein required for f 87.8 5.4 0.00012 39.4 10.4 96 51-148 116-219 (308)
320 PF08631 SPO22: Meiosis protei 87.7 5.4 0.00012 39.4 10.8 100 55-156 3-124 (278)
321 COG2976 Uncharacterized protei 87.3 9.1 0.0002 36.5 11.3 127 51-181 37-187 (207)
322 KOG4814 Uncharacterized conser 87.2 3.1 6.8E-05 45.8 9.2 74 84-159 355-434 (872)
323 PF10516 SHNi-TPR: SHNi-TPR; 87.0 0.99 2.2E-05 31.5 3.6 29 120-148 2-30 (38)
324 KOG1310 WD40 repeat protein [G 86.5 1.4 3.1E-05 47.4 6.1 76 99-174 388-466 (758)
325 KOG1550 Extracellular protein 85.9 15 0.00032 40.2 13.9 110 45-164 244-371 (552)
326 KOG1070 rRNA processing protei 85.9 10 0.00022 45.4 12.8 113 43-161 1456-1572(1710)
327 COG3629 DnrI DNA-binding trans 85.9 3.5 7.7E-05 41.2 8.3 64 83-148 153-216 (280)
328 PF10373 EST1_DNA_bind: Est1 D 85.8 3 6.4E-05 40.2 7.7 62 64-131 1-62 (278)
329 PF14863 Alkyl_sulf_dimr: Alky 85.5 4.1 8.9E-05 36.6 7.8 55 118-172 69-123 (141)
330 KOG0529 Protein geranylgeranyl 85.3 24 0.00051 37.2 14.1 114 52-169 35-161 (421)
331 PF04910 Tcf25: Transcriptiona 85.0 8.2 0.00018 39.9 10.8 101 47-151 105-225 (360)
332 PF07720 TPR_3: Tetratricopept 84.9 3 6.4E-05 28.6 5.1 33 120-152 2-36 (36)
333 COG4649 Uncharacterized protei 84.8 24 0.00052 33.4 12.5 115 47-164 96-211 (221)
334 KOG2300 Uncharacterized conser 84.7 15 0.00033 39.5 12.5 98 45-149 367-475 (629)
335 KOG2047 mRNA splicing factor [ 84.5 19 0.00041 40.0 13.4 143 47-194 389-551 (835)
336 PF12739 TRAPPC-Trs85: ER-Golg 84.3 31 0.00068 36.2 15.0 116 28-148 196-329 (414)
337 PF04910 Tcf25: Transcriptiona 84.0 8.9 0.00019 39.6 10.6 78 72-155 33-140 (360)
338 PHA02537 M terminase endonucle 83.9 6.9 0.00015 38.1 9.1 109 56-167 94-225 (230)
339 TIGR02561 HrpB1_HrpK type III 83.8 12 0.00025 34.2 9.8 81 88-170 15-95 (153)
340 COG5191 Uncharacterized conser 83.4 2.3 5E-05 43.2 5.7 90 67-162 95-185 (435)
341 PF07721 TPR_4: Tetratricopept 83.3 1.5 3.2E-05 27.5 2.8 24 120-143 2-25 (26)
342 PF04212 MIT: MIT (microtubule 82.6 3.4 7.4E-05 31.9 5.3 34 42-75 2-35 (69)
343 PRK15180 Vi polysaccharide bio 82.4 8.5 0.00018 41.4 9.6 98 53-156 297-394 (831)
344 cd02678 MIT_VPS4 MIT: domain c 81.9 3.4 7.4E-05 32.7 5.2 35 41-75 2-36 (75)
345 PF02309 AUX_IAA: AUX/IAA fami 81.9 0.44 9.5E-06 45.6 0.0 58 260-317 108-188 (215)
346 KOG1839 Uncharacterized protei 81.8 4.2 9.1E-05 47.9 7.7 128 43-173 930-1077(1236)
347 TIGR03504 FimV_Cterm FimV C-te 80.7 5.3 0.00012 28.7 5.3 25 123-147 3-27 (44)
348 PF10255 Paf67: RNA polymerase 80.2 9.9 0.00021 40.0 9.2 99 50-151 127-231 (404)
349 PF10255 Paf67: RNA polymerase 80.1 2.6 5.7E-05 44.2 5.0 60 87-148 126-193 (404)
350 PF09670 Cas_Cas02710: CRISPR- 79.5 33 0.00072 35.6 12.9 69 44-114 130-198 (379)
351 KOG3617 WD40 and TPR repeat-co 79.0 14 0.0003 42.2 10.2 100 47-148 860-996 (1416)
352 KOG0530 Protein farnesyltransf 78.9 13 0.00029 37.1 9.0 93 60-158 93-186 (318)
353 COG4941 Predicted RNA polymera 78.3 16 0.00035 37.6 9.7 95 61-163 312-409 (415)
354 cd02682 MIT_AAA_Arch MIT: doma 77.5 5.9 0.00013 31.9 5.2 33 43-75 4-36 (75)
355 PF10516 SHNi-TPR: SHNi-TPR; 77.3 4 8.8E-05 28.4 3.7 28 85-114 3-30 (38)
356 PF10579 Rapsyn_N: Rapsyn N-te 76.6 21 0.00046 29.1 8.1 59 88-148 11-72 (80)
357 PF11817 Foie-gras_1: Foie gra 76.5 16 0.00035 35.5 9.0 84 61-146 154-245 (247)
358 COG3014 Uncharacterized protei 76.1 35 0.00076 35.3 11.3 116 49-167 62-241 (449)
359 cd02656 MIT MIT: domain contai 75.9 7 0.00015 30.7 5.2 35 41-75 2-36 (75)
360 smart00745 MIT Microtubule Int 75.7 7.1 0.00015 30.7 5.3 35 41-75 4-38 (77)
361 PF08424 NRDE-2: NRDE-2, neces 75.0 38 0.00083 34.2 11.6 82 61-148 47-131 (321)
362 PF07720 TPR_3: Tetratricopept 75.0 10 0.00022 25.9 5.1 31 47-77 3-35 (36)
363 cd02677 MIT_SNX15 MIT: domain 74.9 6.3 0.00014 31.5 4.7 35 41-75 2-36 (75)
364 cd02681 MIT_calpain7_1 MIT: do 74.5 7.7 0.00017 31.2 5.2 34 42-75 3-36 (76)
365 COG3947 Response regulator con 74.0 10 0.00023 38.3 7.0 51 118-168 278-328 (361)
366 PF11207 DUF2989: Protein of u 74.0 24 0.00052 33.7 9.1 51 85-138 143-197 (203)
367 KOG3617 WD40 and TPR repeat-co 73.5 39 0.00084 38.8 11.7 89 84-174 859-988 (1416)
368 PF13281 DUF4071: Domain of un 73.4 26 0.00057 36.5 10.1 81 85-167 143-231 (374)
369 COG2909 MalT ATP-dependent tra 73.3 44 0.00095 38.4 12.3 98 45-144 458-564 (894)
370 COG3629 DnrI DNA-binding trans 73.1 16 0.00035 36.6 8.2 63 45-113 153-215 (280)
371 PF02017 CIDE-N: CIDE-N domain 73.1 8.6 0.00019 31.2 5.1 54 261-320 2-57 (78)
372 PF11817 Foie-gras_1: Foie gra 73.0 22 0.00047 34.5 9.0 61 50-112 183-245 (247)
373 cd02683 MIT_1 MIT: domain cont 72.5 8 0.00017 31.0 4.8 33 43-75 4-36 (77)
374 cd02680 MIT_calpain7_2 MIT: do 72.5 7 0.00015 31.4 4.4 35 42-76 3-37 (75)
375 COG3947 Response regulator con 72.2 7 0.00015 39.5 5.3 59 85-145 281-339 (361)
376 PF14863 Alkyl_sulf_dimr: Alky 71.9 9.4 0.0002 34.3 5.7 47 46-96 71-117 (141)
377 cd02684 MIT_2 MIT: domain cont 71.7 8.8 0.00019 30.6 4.9 34 42-75 3-36 (75)
378 PF10345 Cohesin_load: Cohesin 71.1 1.3E+02 0.0028 33.2 15.5 116 45-163 59-185 (608)
379 PF15015 NYD-SP12_N: Spermatog 71.0 20 0.00043 38.0 8.4 87 85-174 179-283 (569)
380 COG0790 FOG: TPR repeat, SEL1 70.8 67 0.0014 31.2 12.0 109 47-163 75-197 (292)
381 TIGR02710 CRISPR-associated pr 70.3 87 0.0019 32.8 13.0 64 46-109 131-195 (380)
382 PF07721 TPR_4: Tetratricopept 69.7 6 0.00013 24.7 2.8 23 85-109 3-25 (26)
383 PF10602 RPN7: 26S proteasome 69.4 53 0.0011 30.3 10.3 66 81-148 34-102 (177)
384 KOG0686 COP9 signalosome, subu 69.2 28 0.0006 36.8 8.9 97 47-146 152-256 (466)
385 COG4455 ImpE Protein of avirul 67.2 45 0.00097 32.7 9.3 63 52-120 8-70 (273)
386 KOG2047 mRNA splicing factor [ 67.2 78 0.0017 35.5 12.2 112 43-157 423-551 (835)
387 PF06957 COPI_C: Coatomer (COP 66.9 16 0.00035 38.6 7.0 112 44-155 203-336 (422)
388 KOG1839 Uncharacterized protei 66.6 37 0.00079 40.5 10.2 127 43-171 971-1117(1236)
389 PF08626 TRAPPC9-Trs120: Trans 66.4 77 0.0017 38.0 13.2 125 43-167 240-459 (1185)
390 PF13226 DUF4034: Domain of un 66.3 63 0.0014 32.4 10.6 117 51-170 6-150 (277)
391 KOG0292 Vesicle coat complex C 66.1 1E+02 0.0023 35.7 13.1 117 42-158 988-1123(1202)
392 PF07079 DUF1347: Protein of u 65.9 29 0.00062 37.2 8.4 58 46-110 463-520 (549)
393 KOG2396 HAT (Half-A-TPR) repea 65.7 34 0.00074 37.0 9.0 61 57-122 117-177 (568)
394 KOG0546 HSP90 co-chaperone CPR 65.5 5 0.00011 41.3 2.8 75 50-130 280-354 (372)
395 PF11207 DUF2989: Protein of u 65.4 16 0.00036 34.8 6.0 57 46-105 142-198 (203)
396 PF04781 DUF627: Protein of un 65.2 39 0.00084 29.3 7.7 72 89-162 2-87 (111)
397 PF10345 Cohesin_load: Cohesin 64.9 1.1E+02 0.0024 33.7 13.4 96 46-143 302-428 (608)
398 cd01812 BAG1_N Ubiquitin-like 63.6 22 0.00048 27.0 5.6 45 262-306 1-46 (71)
399 KOG2561 Adaptor protein NUB1, 62.2 75 0.0016 34.0 10.5 114 35-148 153-296 (568)
400 KOG3807 Predicted membrane pro 61.5 1.2E+02 0.0025 31.7 11.5 92 51-150 190-306 (556)
401 PF03745 DUF309: Domain of unk 60.8 29 0.00062 26.7 5.6 59 49-107 3-61 (62)
402 PF11976 Rad60-SLD: Ubiquitin- 60.7 30 0.00066 26.4 5.9 49 262-313 1-52 (72)
403 PRK15180 Vi polysaccharide bio 60.2 17 0.00037 39.1 5.6 96 52-153 330-425 (831)
404 PF04010 DUF357: Protein of un 59.6 26 0.00057 28.1 5.4 43 29-71 19-61 (75)
405 COG5159 RPN6 26S proteasome re 59.1 81 0.0018 32.1 9.8 52 49-102 7-62 (421)
406 PF07315 DUF1462: Protein of u 59.1 12 0.00027 31.1 3.5 58 266-327 1-62 (93)
407 TIGR03504 FimV_Cterm FimV C-te 57.1 19 0.00041 25.9 3.8 25 87-113 3-27 (44)
408 cd02682 MIT_AAA_Arch MIT: doma 57.0 36 0.00077 27.4 5.7 27 136-162 30-56 (75)
409 COG5191 Uncharacterized conser 56.2 16 0.00034 37.4 4.4 71 48-124 110-181 (435)
410 COG2909 MalT ATP-dependent tra 55.9 3.2E+02 0.007 31.7 14.9 104 43-148 413-526 (894)
411 KOG0985 Vesicle coat protein c 55.7 55 0.0012 38.5 8.8 106 47-166 1196-1326(1666)
412 KOG2422 Uncharacterized conser 55.1 1.5E+02 0.0032 32.9 11.6 111 50-163 240-387 (665)
413 COG4837 Uncharacterized protei 54.7 29 0.00063 29.2 5.0 69 266-338 8-80 (106)
414 cd01615 CIDE_N CIDE_N domain, 53.2 37 0.00079 27.6 5.2 55 261-320 2-57 (78)
415 KOG2300 Uncharacterized conser 52.7 1.7E+02 0.0038 31.8 11.4 97 43-143 443-551 (629)
416 KOG2581 26S proteasome regulat 52.4 1.9E+02 0.0042 30.7 11.6 79 83-164 209-291 (493)
417 cd02679 MIT_spastin MIT: domai 52.4 32 0.00069 27.9 4.8 34 42-75 5-38 (79)
418 PF11846 DUF3366: Domain of un 52.0 71 0.0015 29.4 7.9 50 101-151 127-176 (193)
419 smart00386 HAT HAT (Half-A-TPR 51.6 38 0.00083 20.7 4.3 15 103-117 5-19 (33)
420 KOG2581 26S proteasome regulat 50.7 1.4E+02 0.003 31.8 10.2 115 43-160 245-361 (493)
421 KOG2041 WD40 repeat protein [G 50.6 64 0.0014 36.5 8.1 83 44-144 795-877 (1189)
422 KOG2422 Uncharacterized conser 50.4 86 0.0019 34.6 9.0 94 53-151 350-451 (665)
423 smart00386 HAT HAT (Half-A-TPR 49.8 49 0.0011 20.2 4.6 30 133-162 1-30 (33)
424 PF15297 CKAP2_C: Cytoskeleton 48.8 2E+02 0.0043 29.9 10.9 74 40-116 97-171 (353)
425 PF07929 PRiA4_ORF3: Plasmid p 48.5 33 0.0007 31.5 5.0 39 261-299 4-46 (179)
426 KOG0276 Vesicle coat complex C 48.1 75 0.0016 35.3 8.1 88 66-168 628-723 (794)
427 COG4455 ImpE Protein of avirul 47.4 1.7E+02 0.0036 28.9 9.5 61 92-154 10-70 (273)
428 PF03671 Ufm1: Ubiquitin fold 46.8 1.4E+02 0.003 24.0 7.4 51 261-314 2-58 (76)
429 PF09379 FERM_N: FERM N-termin 46.7 1E+02 0.0022 23.9 6.9 55 266-320 1-59 (80)
430 PF05198 IF3_N: Translation in 46.3 20 0.00043 28.8 2.7 45 301-352 14-59 (76)
431 PF10407 Cytokin_check_N: Cdc1 45.6 44 0.00095 26.7 4.6 33 277-309 9-46 (73)
432 smart00266 CAD Domains present 45.4 41 0.0009 27.0 4.4 36 281-320 19-55 (74)
433 cd06538 CIDE_N_FSP27 CIDE_N do 45.0 48 0.001 27.0 4.7 54 261-320 2-56 (79)
434 KOG4459 Membrane-associated pr 44.4 52 0.0011 35.1 6.2 122 46-168 32-182 (471)
435 PRK13184 pknD serine/threonine 43.3 2.1E+02 0.0046 33.6 11.4 89 59-156 533-628 (932)
436 PF01239 PPTA: Protein prenylt 42.9 73 0.0016 20.4 4.6 25 105-129 3-27 (31)
437 KOG1463 26S proteasome regulat 42.4 2.3E+02 0.005 29.5 10.2 118 48-170 212-335 (411)
438 COG2250 Uncharacterized conser 42.2 2.4E+02 0.0052 24.8 9.3 39 37-75 5-43 (132)
439 KOG1258 mRNA processing protei 41.4 5E+02 0.011 28.8 13.1 114 48-167 300-414 (577)
440 PF14544 DUF4443: Domain of un 40.9 18 0.00038 31.2 1.7 21 307-327 76-96 (108)
441 KOG4563 Cell cycle-regulated h 40.6 56 0.0012 34.0 5.5 35 43-77 39-73 (400)
442 PF10952 DUF2753: Protein of u 40.5 1.5E+02 0.0032 26.5 7.3 97 47-151 3-115 (140)
443 cd06535 CIDE_N_CAD CIDE_N doma 40.4 43 0.00093 27.1 3.8 48 262-312 3-52 (77)
444 smart00213 UBQ Ubiquitin homol 40.4 94 0.002 22.5 5.6 43 264-306 3-46 (64)
445 smart00299 CLH Clathrin heavy 40.3 2.4E+02 0.0051 24.1 9.0 79 57-143 19-106 (140)
446 COG5091 SGT1 Suppressor of G2 39.9 79 0.0017 31.8 6.2 96 53-151 3-111 (368)
447 PF08969 USP8_dimer: USP8 dime 39.0 74 0.0016 27.1 5.4 38 38-75 31-68 (115)
448 KOG0890 Protein kinase of the 38.8 1.1E+02 0.0025 38.9 8.5 110 50-160 1388-1524(2382)
449 PF09797 NatB_MDM20: N-acetylt 38.8 2E+02 0.0043 29.4 9.4 45 99-143 197-241 (365)
450 PF12854 PPR_1: PPR repeat 38.7 76 0.0016 20.9 4.3 26 119-144 7-32 (34)
451 KOG3783 Uncharacterized conser 38.5 1.2E+02 0.0025 33.3 7.7 72 49-125 271-342 (546)
452 cd02680 MIT_calpain7_2 MIT: do 37.9 55 0.0012 26.3 4.0 16 99-114 20-35 (75)
453 PF04212 MIT: MIT (microtubule 37.8 67 0.0014 24.6 4.5 18 129-146 15-32 (69)
454 PF04053 Coatomer_WDAD: Coatom 37.3 1.3E+02 0.0028 32.1 7.9 25 85-111 349-373 (443)
455 PF11543 UN_NPL4: Nuclear pore 37.0 78 0.0017 25.5 4.9 46 262-308 5-51 (80)
456 PF09205 DUF1955: Domain of un 36.7 2.3E+02 0.0051 25.8 8.2 32 116-147 117-148 (161)
457 smart00745 MIT Microtubule Int 36.7 88 0.0019 24.3 5.1 15 137-151 33-47 (77)
458 PF04053 Coatomer_WDAD: Coatom 36.2 2.3E+02 0.005 30.2 9.6 29 117-145 345-373 (443)
459 PF00244 14-3-3: 14-3-3 protei 36.1 87 0.0019 30.4 6.0 49 62-112 143-196 (236)
460 PF02991 Atg8: Autophagy prote 35.7 34 0.00075 29.1 2.7 24 272-295 34-57 (104)
461 PF07219 HemY_N: HemY protein 35.5 1.4E+02 0.003 25.2 6.4 33 43-75 57-89 (108)
462 cd02683 MIT_1 MIT: domain cont 34.8 1.3E+02 0.0027 24.1 5.7 18 136-153 30-47 (77)
463 KOG1464 COP9 signalosome, subu 34.1 1.1E+02 0.0025 30.9 6.4 55 57-113 39-93 (440)
464 cd02679 MIT_spastin MIT: domai 34.1 1.9E+02 0.004 23.5 6.6 23 126-148 15-37 (79)
465 PF01239 PPTA: Protein prenylt 33.9 1.2E+02 0.0025 19.4 4.5 29 138-166 2-30 (31)
466 PF12583 TPPII_N: Tripeptidyl 33.7 1.7E+02 0.0037 26.3 6.8 40 41-80 72-111 (139)
467 KOG0739 AAA+-type ATPase [Post 33.5 58 0.0013 33.4 4.3 35 41-75 6-40 (439)
468 cd02656 MIT MIT: domain contai 33.0 1.1E+02 0.0025 23.7 5.2 15 137-151 31-45 (75)
469 PF02064 MAS20: MAS20 protein 32.9 1.4E+02 0.0029 26.3 6.1 35 45-79 63-97 (121)
470 PF00076 RRM_1: RNA recognitio 32.9 1.7E+02 0.0036 21.2 6.0 48 277-326 6-58 (70)
471 KOG3783 Uncharacterized conser 32.6 3.2E+02 0.007 30.0 9.9 82 83-166 449-538 (546)
472 PF04348 LppC: LppC putative l 32.6 15 0.00032 40.1 0.0 103 43-150 22-129 (536)
473 KOG3616 Selective LIM binding 32.5 2.5E+02 0.0055 32.3 9.2 93 50-144 666-790 (1636)
474 PLN03090 auxin-responsive fami 32.5 88 0.0019 26.8 4.6 47 264-320 45-95 (104)
475 KOG2114 Vacuolar assembly/sort 32.3 1.7E+02 0.0036 33.8 8.0 32 45-76 368-399 (933)
476 smart00101 14_3_3 14-3-3 homol 31.9 1.4E+02 0.0031 29.3 6.7 50 61-112 144-198 (244)
477 smart00295 B41 Band 4.1 homolo 31.9 1.8E+02 0.0039 26.4 7.2 61 260-320 2-66 (207)
478 TIGR01659 sex-lethal sex-letha 31.2 2.9E+02 0.0062 28.4 9.1 50 277-327 201-255 (346)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 31.0 3.5E+02 0.0076 23.4 9.3 84 59-146 40-126 (126)
480 cd02677 MIT_SNX15 MIT: domain 30.8 69 0.0015 25.5 3.6 14 102-115 4-17 (75)
481 KOG0985 Vesicle coat protein c 30.8 6E+02 0.013 30.6 11.9 58 84-148 1105-1162(1666)
482 cd06539 CIDE_N_A CIDE_N domain 30.3 1.7E+02 0.0037 23.7 5.8 53 262-320 3-57 (78)
483 PF15469 Sec5: Exocyst complex 30.3 4.2E+02 0.0091 24.1 11.8 17 99-115 100-116 (182)
484 KOG2908 26S proteasome regulat 29.7 6.7E+02 0.014 26.2 11.4 91 57-149 87-187 (380)
485 COG5560 UBP12 Ubiquitin C-term 29.6 77 0.0017 35.4 4.7 56 267-322 153-209 (823)
486 KOG1464 COP9 signalosome, subu 29.3 1.6E+02 0.0036 29.8 6.6 49 99-147 41-93 (440)
487 KOG2582 COP9 signalosome, subu 29.2 1.3E+02 0.0029 31.4 6.1 110 48-160 105-223 (422)
488 cd02678 MIT_VPS4 MIT: domain c 28.9 1.7E+02 0.0037 22.9 5.6 15 137-151 31-45 (75)
489 PF10475 DUF2450: Protein of u 28.3 5.1E+02 0.011 25.7 10.2 97 42-145 124-223 (291)
490 cd01763 Sumo Small ubiquitin-r 28.3 2.3E+02 0.0051 22.7 6.4 56 258-316 8-65 (87)
491 COG4941 Predicted RNA polymera 27.7 3.1E+02 0.0067 28.6 8.3 41 84-126 366-406 (415)
492 PF08675 RNA_bind: RNA binding 27.2 1.7E+02 0.0037 24.3 5.3 63 270-336 9-71 (87)
493 PLN02560 enoyl-CoA reductase 27.1 1.8E+02 0.0039 29.5 6.7 77 262-342 3-85 (308)
494 smart00774 WRKY DNA binding do 26.7 40 0.00086 25.9 1.4 22 405-428 12-33 (59)
495 KOG1258 mRNA processing protei 26.6 7E+02 0.015 27.7 11.3 114 57-171 267-384 (577)
496 cd01811 OASL_repeat1 2'-5' oli 26.6 2.5E+02 0.0053 22.8 5.9 73 262-339 3-75 (80)
497 PF05168 HEPN: HEPN domain; I 26.3 1.6E+02 0.0036 23.9 5.4 36 40-75 3-38 (118)
498 COG5159 RPN6 26S proteasome re 25.8 4.8E+02 0.01 26.8 9.2 108 38-148 119-235 (421)
499 cd08977 SusD starch binding ou 25.8 2E+02 0.0044 28.9 6.9 30 119-148 176-210 (359)
500 PF01535 PPR: PPR repeat; Int 25.5 1.1E+02 0.0024 18.5 3.2 20 126-145 7-26 (31)
No 1
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.97 E-value=7.6e-31 Score=280.11 Aligned_cols=372 Identities=47% Similarity=0.636 Sum_probs=282.9
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCC-----C-C-CCCCCCCCCc-hhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014213 1 MGRNSGKTKKQIGGQSVGGSPKQI-----K-V-GEHSPKSYDK-DTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKAL 72 (429)
Q Consensus 1 mgk~~~kkk~~~~~~~~~~~~~~~-----~-s-~~~~~~~~d~-d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kAL 72 (429)
||++++|+++....-+...++... . + ..+-....+. +..+++.++..++.+||.+|++++|.+|...|..++
T Consensus 1 ~~d~~~k~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~ 80 (748)
T KOG4151|consen 1 MGDKTLKSKNNLDVLNDAENGAELVGEKSKKPKVLSIVKSLDDEDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAI 80 (748)
T ss_pred CCccccccCCcccccccccccccccccccccchhhhhhhcccccchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhh
Confidence 899999998885532222221111 1 1 2222333334 778899999999999999999999999999999999
Q ss_pred HhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213 73 KLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 73 el~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n 152 (429)
.+.|.++.+.+++++|++.|||++++++|..++.+|+.|+...|...++++.++.+|..+++++-|++++.-...++|.+
T Consensus 81 ~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 81 KLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred eeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccc--cchhhhhhhhcccccC---cccccccc-----cchhhc
Q 014213 153 IMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSI--APKVVKEKTKKKKKSN---KVEQKKTG-----VKVEEK 222 (429)
Q Consensus 153 ~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~--~a~v~k~~~~~k~~~~---~~~~~~~~-----~~~~~~ 222 (429)
.++...+.+++..+...+.+..+ .+++...+.|..+++ ++.+.+++..++++.. .+-.+... .+.+.
T Consensus 161 ~~~~eif~elk~ll~~~d~~s~~--~~~~~~~~~~vg~~~~~~~~i~l~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 237 (748)
T KOG4151|consen 161 VSASEIFEELKGLLELKDLASDE--SELPLEAVAPVGASPALIAKICLQRLYKSKKTDCVEAFLTKDGERLFKERVFED- 237 (748)
T ss_pred chHHHHHHHHHHHHhhcCCcccc--ccCChhhhccccCchHHHHHHHHHHHhhhccchhHHhhcCCcHHhhhhhhhccC-
Confidence 99999999999999777777765 334444577776666 7788888887776332 11111111 11111
Q ss_pred cccccccccccc--chhHHHhhhhhh------hhhhhc-----ccccCCCCceeEEEEeCCceEEEEccCCccHHHHHHH
Q 014213 223 EVDEKIEDKRVD--GRIEEKMAEDKV------VVEEKI-----SSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREV 289 (429)
Q Consensus 223 ~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~ 289 (429)
+++.+..+.... ++.......... .+.+.+ ...+...+++++|+++++|||+.++|.+|++..|+++
T Consensus 238 ~~d~~~~~~~~~~l~a~~~~~v~~~~~~~~~e~l~~~~l~~~~~~~e~~~~~~~~~~v~~~~i~laql~~~~~~~~lR~i 317 (748)
T KOG4151|consen 238 PSDLKFKKKSKCKLKAAQEDPVSDTVKVMDKEQLLEEILAVGGSQDELAQVWRTLKLVYGDDIRLAQLPLNCTVKILREI 317 (748)
T ss_pred cccchhhhhhhhhhhhhcCCcccchhhhhhHHHHHHHhhcccccchHHhhhhhhhhhhhccHHHHHhcchhhchHHHHHH
Confidence 111111111000 111111111100 011100 0124567999999999999999999999999999999
Q ss_pred HHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCC-cEEEEEEeeCCCCchhhhhhhhh-hccchhhhh-hhc
Q 014213 290 ISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQG-SVRLFVVGVNPLQDPLYERFKNE-KVNSLDIEQ-KYF 366 (429)
Q Consensus 290 v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~-~~rl~v~e~~~~~e~~~~~~~~~-~~~~~~~~~-~~~ 366 (429)
|.+ ||.+..|+|||+|.+||+|||++.++|+|+.+.+...+ .+|+|+++++|+|+|.|...+.+ +....+.+- +..
T Consensus 318 i~~-~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~r~~~ve~s~~qd~ry~s~~a~~ke~~i~d~~s~~a 396 (748)
T KOG4151|consen 318 IHS-FPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTLRFYVVEVSPEQDPRYLSIDAELKELKIEDSSSSKA 396 (748)
T ss_pred Hhc-ccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHhhhheeecCccccchhhccccchhhhhccccchHHH
Confidence 999 99999999999999999999999999999999988777 79999999999999999887766 666677766 777
Q ss_pred ccCCCCCCCC
Q 014213 367 ENGNVGNGKE 376 (429)
Q Consensus 367 ~~g~~~~~~~ 376 (429)
.||..+.+.+
T Consensus 397 ln~l~~~~~~ 406 (748)
T KOG4151|consen 397 LNGLKGDAVE 406 (748)
T ss_pred HHhhhccccc
Confidence 7777754443
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.7e-21 Score=187.77 Aligned_cols=125 Identities=30% Similarity=0.454 Sum_probs=119.5
Q ss_pred HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213 40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS 119 (429)
Q Consensus 40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~ 119 (429)
.....|+.|+.+||.+++.++|++|+..|++||+++|+++. +|+|||++|++| |+|+.|+.+|..||.+||.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV----yycNRAAAy~~L--g~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV----YYCNRAAAYSKL--GEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch----HHHHHHHHHHHh--cchHHHHHHHHHHHhcChHHH
Confidence 34588999999999999999999999999999999999995 999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
++|.|+|.+|..+|+|.+|++.|++||.++|+|...+..|..+...+.+..
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999998886644
No 3
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=99.85 E-value=3.1e-21 Score=157.03 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=73.3
Q ss_pred CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhc--------cCC
Q 014213 260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAE--------MQG 331 (429)
Q Consensus 260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~--------~~~ 331 (429)
++++|||||++|+|.++||++++|.+|.++|+++|+...+|+|||+|| ||+|||+|++||++|+++|+ .+|
T Consensus 1 ~~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~ 79 (86)
T cd06408 1 RKIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-GDMITMGDQDDLDMAIDTARSEARKQGSDMG 79 (86)
T ss_pred CcEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-CCCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 478999999999999999999999999999999999999999999998 99999999999999999984 478
Q ss_pred cEEEEE
Q 014213 332 SVRLFV 337 (429)
Q Consensus 332 ~~rl~v 337 (429)
++++||
T Consensus 80 ~~e~w~ 85 (86)
T cd06408 80 KLEIWV 85 (86)
T ss_pred ceeeec
Confidence 999998
No 4
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=99.83 E-value=1.3e-20 Score=150.75 Aligned_cols=66 Identities=33% Similarity=0.502 Sum_probs=60.3
Q ss_pred eEEEEeCCceEEEEccCC-ccHHHHHHHHHhhC----CCCCceEEEEECCCCCEEEecChHHHHHHHHhhc
Q 014213 263 TVKLVFGEDIRVAQLPLN-SSLLQLREVISDRF----PSCRAVLIKYRDEEGDLVTITTDEELRWAEASAE 328 (429)
Q Consensus 263 ~vK~~~~~DiR~~~i~~~-~~~~~L~~~v~~kf----~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~ 328 (429)
-||++||+|||++.+|.+ |+|.+|+++|++.| |+.+.|.|||+|+|||||||||++||++|++++.
T Consensus 2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~ 72 (81)
T cd06401 2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR 72 (81)
T ss_pred eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence 589999999999999985 89999999997555 5668999999999999999999999999999864
No 5
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.81 E-value=1e-19 Score=148.77 Aligned_cols=77 Identities=34% Similarity=0.495 Sum_probs=70.3
Q ss_pred eeEEEEe-----CCceEEEEc--cCCccHHHHHHHHHhhCCCCC--ceEEEEECCCCCEEEecChHHHHHHHHhhccCCc
Q 014213 262 KTVKLVF-----GEDIRVAQL--PLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRWAEASAEMQGS 332 (429)
Q Consensus 262 ~~vK~~~-----~~DiR~~~i--~~~~~~~~L~~~v~~kf~~~~--~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~ 332 (429)
++||+.. ..|||||.| +.+++|.+|+++|+++||.++ +|+|||+|+|||+|||+|++||+||++++. .+.
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~-~~~ 79 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN-DDT 79 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC-CCc
Confidence 3678876 368999998 777899999999999999887 899999999999999999999999999976 789
Q ss_pred EEEEEEe
Q 014213 333 VRLFVVG 339 (429)
Q Consensus 333 ~rl~v~e 339 (429)
+||||++
T Consensus 80 ~RlyI~~ 86 (87)
T cd06402 80 FRIYIKE 86 (87)
T ss_pred EEEEEEe
Confidence 9999997
No 6
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1e-17 Score=155.69 Aligned_cols=132 Identities=33% Similarity=0.535 Sum_probs=122.4
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS 119 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~ 119 (429)
.+..+..++.+||.+|.+|+|++|...|..||++.|.-+. .++.+|.|+|+|++++ +.++.||.+|.+||+++|.|.
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl--~k~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL--RKWESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh--hhHHHHHHHHHhhHhcCchhH
Confidence 4678899999999999999999999999999999997554 5789999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+|+.|||.+|..+..|++|+.+|++.+.++|.+..+...+.++-..+.++...+.
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888876555544
No 7
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=99.74 E-value=1.4e-17 Score=135.52 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=71.0
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC--CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEEEEE
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC--RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVRLFV 337 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~--~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~rl~v 337 (429)
++||++||+|++++.||++++|.+|++.|+++|+.. .+|.|||.|+|||+|+|+||+||+.|+..+.. ...++|+|
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v 80 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLV 80 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEe
Confidence 489999999999999999999999999999999765 58999999999999999999999999998754 45699998
Q ss_pred E
Q 014213 338 V 338 (429)
Q Consensus 338 ~ 338 (429)
.
T Consensus 81 ~ 81 (82)
T cd06407 81 H 81 (82)
T ss_pred e
Confidence 6
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.73 E-value=1.9e-17 Score=133.57 Aligned_cols=78 Identities=35% Similarity=0.540 Sum_probs=71.5
Q ss_pred ceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEEEEE
Q 014213 261 KKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVRLFV 337 (429)
Q Consensus 261 ~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~rl~v 337 (429)
+++||++|++|+|++.+|.+++|.+|+.+|.++|+.. ..|.|+|+|+|||+|||+|++||.+|++.+.. ...++|||
T Consensus 1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v 80 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRLHV 80 (81)
T ss_pred CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEEEe
Confidence 4689999999999999999999999999999999865 58999999999999999999999999999865 46799988
Q ss_pred E
Q 014213 338 V 338 (429)
Q Consensus 338 ~ 338 (429)
.
T Consensus 81 ~ 81 (81)
T smart00666 81 F 81 (81)
T ss_pred C
Confidence 4
No 9
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.72 E-value=3.8e-17 Score=132.39 Aligned_cols=79 Identities=41% Similarity=0.610 Sum_probs=73.3
Q ss_pred ceeEEEEeCCceEE-EEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEEEE
Q 014213 261 KKTVKLVFGEDIRV-AQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVRLF 336 (429)
Q Consensus 261 ~~~vK~~~~~DiR~-~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~rl~ 336 (429)
|++||++|++|+|+ +.++.+++|.+|+..|+.+|+.. ..|.|+|+|+|||+|||+||+||.+|++.+.. .+.+|||
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~~~~lrl~ 80 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESGSKTLRLF 80 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 68999999999999 99999999999999999999876 88999999999999999999999999999854 3579999
Q ss_pred EEe
Q 014213 337 VVG 339 (429)
Q Consensus 337 v~e 339 (429)
|++
T Consensus 81 v~~ 83 (84)
T PF00564_consen 81 VQD 83 (84)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-16 Score=160.66 Aligned_cols=141 Identities=30% Similarity=0.389 Sum_probs=123.8
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHH
Q 014213 27 GEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----------DVSYLRSNMAACYMQ 95 (429)
Q Consensus 27 ~~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----------~~a~l~~nrA~~y~k 95 (429)
...++|.+... .-+..|...++.||.||+.|+|..|+..|.+|+........ .+..+|.|+|+||++
T Consensus 192 ~~~~s~~~~~~--e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 192 KEDESWKMFAE--ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK 269 (397)
T ss_pred CcccccccchH--HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34455555554 45699999999999999999999999999999998874321 135789999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213 96 MGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL 171 (429)
Q Consensus 96 l~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~ 171 (429)
| ++|..|+..|+++|+++|+|.+|+||+|.||..+|+|+.|..+|++|++++|+|..+...+..+...+.+...
T Consensus 270 l--~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 270 L--KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred h--hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999999999998887765443
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-16 Score=163.41 Aligned_cols=130 Identities=37% Similarity=0.562 Sum_probs=112.3
Q ss_pred CCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213 31 PKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110 (429)
Q Consensus 31 ~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ 110 (429)
...+..+.. ++.|..++++||.+|..|.|++||.+|++||++.|+.+. +|+||++||..+ |+|++.+++|++
T Consensus 103 ~~a~~~e~~--~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi----FYsNraAcY~~l--gd~~~Vied~Tk 174 (606)
T KOG0547|consen 103 KKAMLKEER--LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI----FYSNRAACYESL--GDWEKVIEDCTK 174 (606)
T ss_pred hhccChHHH--HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch----hhhhHHHHHHHH--hhHHHHHHHHHH
Confidence 333444444 599999999999999999999999999999999999874 999999999999 999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhh
Q 014213 111 ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP--KNIMAAEIAERVKKELEKR 169 (429)
Q Consensus 111 ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P--~n~~a~~~La~l~~~l~e~ 169 (429)
||+++|++++||+|||.+++.+|++++|+.++. ++.+.- .|.+..-.+.++++.++.+
T Consensus 175 ALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~Lkk~a~~ 234 (606)
T KOG0547|consen 175 ALELNPDYVKALLRRASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERVLKKQAMK 234 (606)
T ss_pred HhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 444432 4666777777777777543
No 12
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=99.69 E-value=1.5e-16 Score=128.33 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=70.9
Q ss_pred eeEEEEeCCceEEEEccC--CccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhcc-CCcEEEEEE
Q 014213 262 KTVKLVFGEDIRVAQLPL--NSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEM-QGSVRLFVV 338 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~--~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~-~~~~rl~v~ 338 (429)
++|||+|++|+++|.+++ +++|.+|...|+++|... +|.|||.|+|||+|||+||.||+.|+.++.. +..+|++|.
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v~ 79 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNVY 79 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEEe
Confidence 589999999999999999 889999999999999766 9999999999999999999999999999854 455899887
Q ss_pred e
Q 014213 339 G 339 (429)
Q Consensus 339 e 339 (429)
|
T Consensus 80 ~ 80 (81)
T cd06396 80 E 80 (81)
T ss_pred c
Confidence 5
No 13
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.67 E-value=2.8e-16 Score=126.47 Aligned_cols=77 Identities=38% Similarity=0.512 Sum_probs=70.9
Q ss_pred eeEEEEeCCceEEEEcc-CCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhc--cCCcEEEEE
Q 014213 262 KTVKLVFGEDIRVAQLP-LNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAE--MQGSVRLFV 337 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~-~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~--~~~~~rl~v 337 (429)
++||++|++|+|++.+| .+++|.+|+.+|+++|+.. ..|.|+|+|+|||+|||+|++||++|++.+. ..+.++|||
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v 80 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLFV 80 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEEe
Confidence 46999999999999999 9999999999999999765 7899999999999999999999999999986 467899987
Q ss_pred E
Q 014213 338 V 338 (429)
Q Consensus 338 ~ 338 (429)
.
T Consensus 81 ~ 81 (81)
T cd05992 81 F 81 (81)
T ss_pred C
Confidence 3
No 14
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=99.67 E-value=3.6e-16 Score=125.74 Aligned_cols=68 Identities=29% Similarity=0.316 Sum_probs=63.5
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCC--ceEEEEECCCCCEEEecChHHHHHHHHhhcc
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRWAEASAEM 329 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~--~~~iky~DedgDliti~~~~dl~~a~~~~~~ 329 (429)
++||++|++||+++.++.+++|.+|.++|++.|+... +|+|||+|||||.|||+||+||.||+.+...
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYEL 70 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999997665 7999999999999999999999999988643
No 15
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.67 E-value=5.7e-16 Score=128.36 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=69.7
Q ss_pred eEEEEeCCceEEEEccC-----CccHHHHHHHHHhhCCCC--CceEEEEECCCCCEEEecChHHHHHHHHhh---ccCCc
Q 014213 263 TVKLVFGEDIRVAQLPL-----NSSLLQLREVISDRFPSC--RAVLIKYRDEEGDLVTITTDEELRWAEASA---EMQGS 332 (429)
Q Consensus 263 ~vK~~~~~DiR~~~i~~-----~~~~~~L~~~v~~kf~~~--~~~~iky~DedgDliti~~~~dl~~a~~~~---~~~~~ 332 (429)
.|||.|++|+|||.+|. +++|.+|.++|++.|... ..|.|+|+|+|||+|||+|++||.+|+++. ....+
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~ 81 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNP 81 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCce
Confidence 69999999999999996 699999999999999655 589999999999999999999999999985 23567
Q ss_pred EEEEEEe
Q 014213 333 VRLFVVG 339 (429)
Q Consensus 333 ~rl~v~e 339 (429)
+||.|+-
T Consensus 82 lrl~v~~ 88 (91)
T cd06398 82 LRIDVTV 88 (91)
T ss_pred EEEEEEE
Confidence 9999984
No 16
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.7e-16 Score=159.24 Aligned_cols=118 Identities=31% Similarity=0.497 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
+.+.+.++.||.+|+.|+|..|+..|++||..+|+++. +|+|||.||.+| +.|..|+.+|+.+++++|++.++|
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL--~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKL--GEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCchHHHHH
Confidence 44788899999999999999999999999999999984 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
+|.|.|+..+.+|+.|++.|.+++.++|++..+...+.++..++
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876
No 17
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.64 E-value=1e-15 Score=151.87 Aligned_cols=125 Identities=28% Similarity=0.413 Sum_probs=117.2
Q ss_pred chhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 014213 36 KDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT 115 (429)
Q Consensus 36 ~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld 115 (429)
.=...+|+.+.+++++||.||++|.|++|+.||.+++.++|.++. +|.|||.+|+++ ..|..|..+|+.|+.++
T Consensus 88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV----~~~NRA~AYlk~--K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV----YHINRALAYLKQ--KSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc----chhhHHHHHHHH--HHHHHHHHhHHHHHHhh
Confidence 334567899999999999999999999999999999999999995 999999999999 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 116 PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 116 P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
-.|.+||.||+.+-..||...+|..+|+.+|.|+|++.+....++.+...+
T Consensus 162 ~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 162 KLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 999999999999999999999999999999999999999888888876644
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.62 E-value=9.2e-15 Score=149.20 Aligned_cols=118 Identities=19% Similarity=0.330 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
+..|+.+|+.+|..|+|++|+..|.+||+++|.+.. +|+++|.||+++ |+|++|+.+|++|+.++|++..+|++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~----a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE----LYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 456899999999999999999999999999999885 999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
+|.+|..+|+|++|+.+|++++.++|++..+...+..+...+..
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888854
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=1.9e-14 Score=128.59 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.+...|..+++.|+|++|+..|++++.++|.+.. +|.++|.++..+ |+|++|+..|++++.++|+++.+++++|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR----AHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3667899999999999999999999999999885 999999999999 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
.||..+|++++|+..|++++.+.|+++.++..++.++..+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887664
No 20
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.2e-15 Score=153.53 Aligned_cols=113 Identities=26% Similarity=0.390 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
|.++++.||.+|..|+|+.|+.+|.+||.++|.++. +|+|+++||..+ ++|.+|+.+..++++++|+|+++|.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv----lySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r 75 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV----LYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSR 75 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc----hhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHH
Confidence 578999999999999999999999999999999996 999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~ 163 (429)
+|.++..+|+|++|+..|.+.|+.+|+|...+..+..++
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999988
No 21
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.1e-14 Score=142.51 Aligned_cols=124 Identities=27% Similarity=0.356 Sum_probs=114.5
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k 120 (429)
..+....+++.||.+|++|+|..|.++|.+||.++|.+....+.+|.|||.++.++ |+..+||.+|+.|+.|||.+.+
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL--grl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL--GRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc--CCchhhhhhhhhhhhcCHHHHH
Confidence 34777889999999999999999999999999999998877889999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
||+++|.||..+++|++|+++|++|++++-+ ...+..+.++...|.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 9999999999999999999999999999876 667777777766665
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.46 E-value=1.9e-12 Score=112.15 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..+...|..+++.|+|++|+..|+.++.++|.+.. ++.++|.+|+.+ +++++|+..+++++.++|+++..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR----YWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 45788999999999999999999999999999875 999999999999 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
|.+|..+|+++.|+..|++++.++|++.........+...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777776654
No 23
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-12 Score=125.52 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=121.9
Q ss_pred CCCCCCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCc------cHHHHHHHH
Q 014213 24 IKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL--------PRNHI------DVSYLRSNM 89 (429)
Q Consensus 24 ~~s~~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~--------P~~~~------~~a~l~~nr 89 (429)
|......+|.++.|+.+ +....+.++||.+|..|+|.+|..+|..||-.. |.+++ ....++.|.
T Consensus 159 P~qYq~e~WqlsddeKm--kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy 236 (329)
T KOG0545|consen 159 PSQYQRETWQLSDDEKM--KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNY 236 (329)
T ss_pred chhhccccccCCchHhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhH
Confidence 44467789999999887 888999999999999999999999999998654 44443 135689999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHh
Q 014213 90 AACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM-AAEIAERVKKELEK 168 (429)
Q Consensus 90 A~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~-a~~~La~l~~~l~e 168 (429)
+.|++.. |+|-+++..|...|...|.+.+|||+||.|+...-+.++|..+|.++|.++|.-.. +...+..+..++.+
T Consensus 237 ~QC~L~~--~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 237 CQCLLKK--EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAE 314 (329)
T ss_pred HHHHhhH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999997543 44555555555544
Q ss_pred hc
Q 014213 169 RG 170 (429)
Q Consensus 169 ~~ 170 (429)
+.
T Consensus 315 k~ 316 (329)
T KOG0545|consen 315 KQ 316 (329)
T ss_pred hh
Confidence 43
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=2.5e-12 Score=139.66 Aligned_cols=105 Identities=31% Similarity=0.461 Sum_probs=98.1
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
...|..+++.|+.+|+.|+|++|+..|++||.+.|. + .+|+|+|.||+++ |+|++|+.+|++||+++|++.++
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l~p~~~~a 196 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNAL--GDWEKVVEDTTAALELDPDYSKA 196 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCCHHH
Confidence 377889999999999999999999999999999995 3 3899999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998888876543
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.41 E-value=4.4e-13 Score=140.96 Aligned_cols=151 Identities=20% Similarity=0.177 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
-+.+|.++||+|-..+.|+.|+.+|.+|+.+.|++.. +|.|+|-.|... |..+-||..|++||+++|+++.||.
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~----a~gNla~iYyeq--G~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV----AHGNLACIYYEQ--GLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh----hccceEEEEecc--ccHHHHHHHHHHHHhcCCCchHHHh
Confidence 3467899999999999999999999999999999886 999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcc---cccchhhhhh
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVT---SIAPKVVKEK 200 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~---~~~a~v~k~~ 200 (429)
++|.++..+|+..+|+++|.+||.+.|+++++..+|+.++..++.-+.+..-+...|. +.|.-+ .-++.+.+++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988888776665664 444433 3455666655
Q ss_pred hhc
Q 014213 201 TKK 203 (429)
Q Consensus 201 ~~~ 203 (429)
++-
T Consensus 402 gnl 404 (966)
T KOG4626|consen 402 GNL 404 (966)
T ss_pred ccH
Confidence 543
No 26
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=8.9e-12 Score=112.90 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
+.-+.+...|..+++.|++++|...|+-.+.++|.+.. .|.|+|.|+-.+ |+|++||..|.+|+.++|+++.++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~--g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQ--KHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHH
Confidence 34467899999999999999999999999999999985 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
++.|.||..+|+.+.|...|+.|+.+.-.++.......++..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 999999999999999999999999987555444444444443
No 27
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=5.7e-12 Score=125.31 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.+..+.++|..+...|++++|+..|++|++++|+++. +|+++|.+|..+ |+|++|+..|+++++++|++..+|+
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~ 136 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD----AYNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAYL 136 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3566889999999999999999999999999999885 999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
++|.+|...|++++|+.+|++++.++|+++.
T Consensus 137 ~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 137 NRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999974
No 28
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-12 Score=128.87 Aligned_cols=111 Identities=26% Similarity=0.356 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
+.|..+++.||.||+..+|..|+.+|.++|...-.++...+++|+|||+|.+-+ |+|..||.+|.+|+.++|++.+||
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l--~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL--GNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHhcCcchhhhh
Confidence 578999999999999999999999999999998888877789999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a 155 (429)
+|-|.|+..|.++++|+.+++..+.++-....+
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999999999988776544433
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.36 E-value=2.4e-12 Score=135.49 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.|..+.++||.+...|.+++|...|.+|++..|.-. .+++|+|..|-+. |++++|+..|.+||+++|.+..+|.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a----aa~nNLa~i~kqq--gnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA----AAHNNLASIYKQQ--GNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh----hhhhhHHHHHHhc--ccHHHHHHHHHHHHhcCchHHHHHH
Confidence 455566666666666666666666666666666554 3778888888777 8888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCCC
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELPP 182 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~p 182 (429)
++|..|..+|+...|+++|.+|+.++|..+++..+|+.+++.-+.-..++..+ +.+|.|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 88888888888888888888888888888888888888877777666665533 444444
No 30
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=99.36 E-value=4.5e-12 Score=101.07 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=60.6
Q ss_pred eEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhc
Q 014213 263 TVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAE 328 (429)
Q Consensus 263 ~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~ 328 (429)
++|+.|++|+|||.+|...+|..|.+++...|... ..|.|+|-|+|||.|||+|++||+.++..+.
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~~ 68 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLSH 68 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhcc
Confidence 68999999999999999999999999999999433 2599999999999999999999999998753
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.35 E-value=8.9e-12 Score=135.33 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.+..+...|..++..|++++|+..|+++|+++|.+.. .|.++|.+|+.+ |+|++|+..++++++++|+++.+|+
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~----~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ----SYIKRASMNLEL--GDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3456788899999999999999999999999998774 899999999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~ 177 (429)
.+|.+|..+|++++|+.+|++++.++|++..++..++.++..+++...+.....
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887777766433
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=2.8e-11 Score=113.96 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH-HHcCCCC--HHHHHHHHHHHHHhCCCCHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACY-MQMGLSE--YPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y-~kl~~g~--y~eAi~~~~~ALeldP~~~k 120 (429)
.+..|...|..|...|+|++|+..|.+|+++.|++.. ++.++|.++ ... |+ +++|+..++++++++|++..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~----~~~~lA~aL~~~~--g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE----LYAALATVLYYQA--GQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCCChh
Confidence 3455788888888999999999999999999988875 888888874 666 66 58899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
+++.+|.++..+|+|++|+.+|++++.++|.+..-...+..
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 99999999999999999999999999888866544444443
No 33
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.33 E-value=2.1e-12 Score=133.24 Aligned_cols=122 Identities=25% Similarity=0.353 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..|..++++++.+|...+|+.|+..|.+||+++|+... ++.||+.+|++. ++|..|+.++.+|++++|.+.++|
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~----~~anRa~a~lK~--e~~~~Al~Da~kaie~dP~~~K~Y 75 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI----YFANRALAHLKV--ESFGGALHDALKAIELDPTYIKAY 75 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee----eechhhhhheee--chhhhHHHHHHhhhhcCchhhhee
Confidence 35788999999999999999999999999999999986 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
+++|.++..++++.+|+.+|+....+.|+.+.+...+.++.....+++
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998886543
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.29 E-value=1.1e-10 Score=97.67 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKAL 122 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl 122 (429)
..+...|..++..|+|++|+..|.+++...|.+.. ...+++.+|.++++. ++|++|+..|..++...|++ ..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQ--GKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 46889999999999999999999999999987642 235788899999999 99999999999999999885 6789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
+.+|.+|..+|++++|+..+++++...|++..+.....+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 999999999999999999999999999999887665543
No 35
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=99.24 E-value=3.9e-11 Score=98.19 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=63.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHhhCCCC----CceEEEEECCCCCEEEecChHHHHHHHHhhccCC--cEEEEEE
Q 014213 269 GEDIRVAQLPLNSSLLQLREVISDRFPSC----RAVLIKYRDEEGDLVTITTDEELRWAEASAEMQG--SVRLFVV 338 (429)
Q Consensus 269 ~~DiR~~~i~~~~~~~~L~~~v~~kf~~~----~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~--~~rl~v~ 338 (429)
.+++.|+.+.++.++.+|++.|.+||+.. ..|.|+|.|+|||+|.||||+||..|+..++..| .++|+|.
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~v~ 84 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLHLH 84 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEEEEe
Confidence 67899999999999999999999999755 5799999999999999999999999999986654 4888886
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=1.3e-11 Score=130.92 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
.+.|...||-|--+++|+.|+.+|++||.++|+.. ++|..+|.-+... .+|+.|...|+.||.++|++..|||.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~--ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIAT--EEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhh--HHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 45789999999999999999999999999999877 6888899998888 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP 182 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p 182 (429)
+|.+|...++++.|.-.|++|+.++|.|......++.++.+++....++. +++.-|+|
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998887777 56666664
No 37
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=4.9e-11 Score=106.57 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
..|++|++++|.+ +.++|.++.++ |+|++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++
T Consensus 14 ~~~~~al~~~p~~-------~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSVDPET-------VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHcCHHH-------HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5689999999974 35689999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 146 LNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
+.++|+++.++..++.++..+++...+.......+
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999998888877444433
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.7e-11 Score=121.54 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=113.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYE 130 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~ 130 (429)
.||-|--+++++.|+.+|++||+++|.... +|..+|.-|+.| .+...|+..|++|++++|.+.+|||.+|++|.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~----aWTLmGHEyvEm--KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLS----AWTLMGHEYVEM--KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhH----HHHHhhHHHHHh--cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 489999999999999999999999999884 999999999999 99999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 131 ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 131 ~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
-|+-+.=|+-+|++|+.+-|+++..|..++.++..+.....|..
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999988888777
No 39
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=99.21 E-value=8e-11 Score=93.83 Aligned_cols=74 Identities=27% Similarity=0.386 Sum_probs=66.9
Q ss_pred eEEEEeCCceEEEEccCC--ccHHHHHHHHHhhCC-CCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEE
Q 014213 263 TVKLVFGEDIRVAQLPLN--SSLLQLREVISDRFP-SCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVV 338 (429)
Q Consensus 263 ~vK~~~~~DiR~~~i~~~--~~~~~L~~~v~~kf~-~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~ 338 (429)
.||..|+.|.||+.++.+ .+|.+|...|...+. ..-+|.|+|-|.+|||++|++|+.+..|++++. -.+||+|+
T Consensus 2 eVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~--plLRl~iq 78 (80)
T cd06403 2 EVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSAN--PLLRIFIQ 78 (80)
T ss_pred ceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcCC--CceEEEEE
Confidence 589999999999999998 899999999999993 235799999999999999999999999999873 46999997
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=2.3e-10 Score=123.26 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
...|..+...|++++|+..|++|++++|++.. +|+++|.+|..+ |++++|+..++++++++|.+..+++.++.+
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~--G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMA--GQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 34444455555555555555555555554442 444455555554 555555555555555555544444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhhccc
Q 014213 129 YEALNRLDLAFRDVTTVLNKE-PKNIMAAEIAERVKKELEKRGLR 172 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~-P~n~~a~~~La~l~~~l~e~~~a 172 (429)
++.+|++++|+..+++++... |+++.++..++.++..+++...|
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 444555555555555554442 44444444455444444443333
No 41
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.3e-11 Score=112.38 Aligned_cols=100 Identities=22% Similarity=0.306 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..++++++.||.+|....|..|+.+|.+||.++|..+. +|.|+|.||+++ .+|+.+..+|.+|++++|+.++++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~----Y~tnralchlk~--~~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS----YYTNRALCHLKL--KHWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch----hhhhHHHHHHHh--hhhhhhhhhHHHHHhcChHHHHHH
Confidence 45688999999999999999999999999999998874 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
|-+|.++.....|++|+..+.+|+.+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999776
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=5.5e-10 Score=101.97 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.+..+...|..++..|+|++|+..|++++...|.+.. ++..+|.+|+.+ |++++|+..+++++++.|.+..+++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL----AYLALALYYQQL--GELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3567888999999999999999999999999998764 888899999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhhccccc
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKE--PKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~--P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
.+|.+|...|++++|+..|++++... |.....+..++.++...++...+..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999864 4556677778888877776665555
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=3.3e-10 Score=87.16 Aligned_cols=99 Identities=31% Similarity=0.428 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.+...|..++..|++++|+..|.++++..|.+. .++.++|.+|... +++++|+..+++++.+.|.+..+++.+|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 367899999999999999999999999999876 4889999999999 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
.++..+|+++.|...+.+++.+.|.
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999998874
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.16 E-value=1.3e-10 Score=89.81 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN-RLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG-~~deAl~~~~kAL~l~P 150 (429)
.+|.++|.+++.+ ++|++|+..|+++++++|+++.+|+++|.||..+| ++++|+.+|+++++++|
T Consensus 4 ~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4666777777777 77777777777777777777777777777777777 57777777777777766
No 45
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.16 E-value=1.2e-09 Score=99.72 Aligned_cols=107 Identities=27% Similarity=0.276 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..+..+...|..++..|+|++|+.+|.+++.+.|... ..+.++.++|.+|..+ |+|++|+..+.+++.+.|.+..++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASN--GEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHH
Confidence 5567789999999999999999999999999987643 2346899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 014213 123 LKRARCYEALNR--------------LDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 123 ~~rA~ay~~LG~--------------~deAl~~~~kAL~l~P~n 152 (429)
+.+|.+|..+|+ +++|++.+++++.++|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999988 678888889999999887
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.16 E-value=2.7e-10 Score=107.31 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--
Q 014213 58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY-EALNR-- 134 (429)
Q Consensus 58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay-~~LG~-- 134 (429)
.++.++++..|.++|+.+|++.. +|.++|.+|+.+ |++++|+..|++|+.++|++..+++.+|.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~----~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE----QWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence 56779999999999999999986 999999999999 9999999999999999999999999999985 67787
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
+++|...++++++++|++..++..++.+...+++...++......|
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999998888887443333
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1e-09 Score=100.16 Aligned_cols=124 Identities=17% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLYSKAL 122 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~~kAl 122 (429)
+..+...|..++..|++++|+..|.+++++.|.+.. ++.++|.+|+.+ |++++|+..+.+++... |.....+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD----VLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPARSL 138 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHc--ccHHHHHHHHHHHHhccccccchHHH
Confidence 445678899999999999999999999999998774 889999999999 99999999999999864 5667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+.+|.+|..+|++++|...|.+++..+|++..++..++.++...++...+..
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999988887666655
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=3e-10 Score=125.04 Aligned_cols=130 Identities=8% Similarity=-0.071 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
+..++..|....+.|.|++|+..++.++++.|.+.. ++.+++.++.++ +++++|+..+++++..+|++..+++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~--~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQ--QGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHh--ccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 566788999999999999999999999999999885 999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
+|.++..+|+|++|+..|++++..+|+++.++..++.+++.+++...|...+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877777444443
No 49
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=1.3e-10 Score=89.67 Aligned_cols=67 Identities=30% Similarity=0.460 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCC
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTP 116 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP 116 (429)
.|..|...|..++..|+|++|+..|++||+++|.+.. +|+++|.||+.+ | +|.+|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~----~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE----AYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH----HHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 4678999999999999999999999999999999885 999999999999 9 79999999999999998
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.13 E-value=7.1e-10 Score=126.36 Aligned_cols=125 Identities=15% Similarity=0.081 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
..+..++..|++++|+..|.+|++++|. . .++.++|.++.++ |++++|+..+++++.++|+++.+++++|.++
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~----~a~~~LA~~l~~l--G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-A----NAYVARATIYRQR--HNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-H----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555568888888888888888884 4 3778888888888 8888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213 130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP 181 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~ 181 (429)
..+|++++|+..|++++.++|+++.++..++.++..+++...+.. +++..+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888877666665 3344444
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=5.6e-10 Score=111.05 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213 59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138 (429)
Q Consensus 59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA 138 (429)
+..+.++..+.++|...|-+++..+.+|+++|.+|..+ |++.+|+.+|+++++++|+++.+|+.+|.+|..+|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46788999999999877766666678999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213 139 FRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 139 l~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~ 177 (429)
+..|+++++++|++..++..++.++...++...+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999988888777777443
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=7.1e-10 Score=119.44 Aligned_cols=111 Identities=14% Similarity=-0.019 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213 58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL 137 (429)
Q Consensus 58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de 137 (429)
.+++++|+..|++|++++|+++. +|..+|.++..+ |++++|+..|++|++++|+++.+|+.+|.+|..+|++++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQ----ALGLLGLINTIH--SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 35589999999999999999985 899999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 138 AFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 138 Al~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|+..|++++.++|.++.+...+..+...+++...+..
T Consensus 391 Ai~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 391 ALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999999998776665555555565554444
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=1e-09 Score=104.13 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK--- 120 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k--- 120 (429)
.+..+...|..++..|+|++|+..|++++...|.++ ....+++++|.+|+.+ ++|++|+..++++++..|++..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKS--GDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCchHH
Confidence 346789999999999999999999999999999875 2234788999999999 9999999999999999998776
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 121 ALLKRARCYEAL--------NRLDLAFRDVTTVLNKEPKNIMAAEIA 159 (429)
Q Consensus 121 Al~~rA~ay~~L--------G~~deAl~~~~kAL~l~P~n~~a~~~L 159 (429)
+++.+|.++..+ |+++.|+..|++++..+|++..+...+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 799999999987 889999999999999999997665444
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=3.9e-10 Score=119.95 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.-.+|+-.|..|+++++|+.|.-.|++|++++|.+.. +.+..|..|.++ |+.++|+..+++|+.++|.++-.-|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~--k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQL--KRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHh--hhhhHHHHHHHHHHhcCCCCchhHH
Confidence 3455777777777777777777777777777777774 677777777777 7777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
.+|.++..+++|++|+..+++.-.+.|++..++..++++++.++....|+......+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 777777777777777777777777777777777777777777777777766554444
No 55
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=2.3e-09 Score=97.36 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..+..+...|..++..|+|++|+..|.+|+.+.|... ..+.+|.++|.+|..+ |++++|+..|.+|+.++|.+..++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~--g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSN--GEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHH
Confidence 5678899999999999999999999999999987533 3456899999999999 999999999999999999999999
Q ss_pred HHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 014213 123 LKRARCYE-------ALNRLD-------LAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 123 ~~rA~ay~-------~LG~~d-------eAl~~~~kAL~l~P~n~ 153 (429)
+.+|.+|. .+|+++ +|+..|++++.++|.+.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999 777766 55666667777888654
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.10 E-value=1.1e-09 Score=124.70 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+...|..+.+.|++++|+..|.+|+.++|++.. ++.++|.++..+ |++++|+..|++|++++|+++.+++++|.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~----a~~nLG~aL~~~--G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSN----YQAALGYALWDS--GDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344444444444444444444444444444442 444444444444 44444444444444444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
+|..+|++++|+.+|++++.++|++..+....+.+....
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 444444444444444444444444444444444444433
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.1e-09 Score=104.33 Aligned_cols=134 Identities=18% Similarity=0.091 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..+....++|..|++.|++..|...+++||+.+|.+.. +|..||..|.++ |+.+.|-+.|++|+.++|++...+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~----a~~~~A~~Yq~~--Ge~~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL----AHLVRAHYYQKL--GENDLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHc--CChhhHHHHHHHHHhcCCCccchh
Confidence 45677889999999999999999999999999999885 899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNK--EPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP 182 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l--~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p 182 (429)
.+.|--++..|+|++|...|++|+.. -|.....+.+++.|-...++.+.+.. .+..+++|
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 99999999999999999999999985 35667889999999988887776666 34444554
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=7.9e-10 Score=114.36 Aligned_cols=123 Identities=22% Similarity=0.198 Sum_probs=113.2
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
-.+|..|.-.|..+|-.|++-+|...++.+|.++|.+.. +|..||.+|+.. .+-.+-..+|++|..+||.++..
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~----lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS----LYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch----HHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCch
Confidence 577899999999999999999999999999999999884 799999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
||.||+.+.-+++|++|+.+|+++++|+|+|.-++..+.-+..+++.-.
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888887777766665433
No 59
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=7.9e-10 Score=110.38 Aligned_cols=107 Identities=25% Similarity=0.312 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
++...+.|+.++.+|+|.+|+..|..|++.+|++.. +++.||.+|+.| |+-..|+.+++++|++.|++.-|-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~----aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ----AIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH----HHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHH
Confidence 466889999999999999999999999999999884 889999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE 157 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~ 157 (429)
||.++..+|.++.|..+|+.+|..+|++....+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 999999999999999999999999997654433
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.2e-10 Score=119.08 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=108.5
Q ss_pred hHHHHhHHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 014213 38 TEVFIGMSQELK---------EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHEC 108 (429)
Q Consensus 38 ~~~~l~~A~~lk---------~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~ 108 (429)
...||+.|..+- -+|..|+-.|+|+.|+.+|+.||...|++.. +|+.+|+.+..- .++.+||..|
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~----lWNRLGAtLAN~--~~s~EAIsAY 487 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL----LWNRLGATLANG--NRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH----HHHHhhHHhcCC--cccHHHHHHH
Confidence 344555555443 5799999999999999999999999999984 999999999988 8999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHhhc
Q 014213 109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN----------IMAAEIAERVKKELEKRG 170 (429)
Q Consensus 109 ~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n----------~~a~~~La~l~~~l~e~~ 170 (429)
++||++.|.|+++.|++|.+|..+|.|++|+.+|-.||.+.+.+ ..+|..|..+...++...
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999999999997651 246677766665554433
No 61
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.04 E-value=2e-09 Score=118.29 Aligned_cols=122 Identities=15% Similarity=0.072 Sum_probs=107.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHhCCCCHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR----AIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~e----Ai~~~~~ALeldP~~~kAl~~r 125 (429)
..|..++..|++++|+..|.+++.+.|.+.. ++.++|.+|..+ |++++ |+..|+++++++|++..++..+
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~----~~~~Lg~~l~~~--G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l 290 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAA----LRRSLGLAYYQS--GRSREAKLQAAEHWRHALQFNSDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHc--CCchhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3477888899999999999999999988764 888899999998 99885 8999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~ 177 (429)
|.+|..+|++++|+..+++++.++|+++.++..++.++..+++...+.....
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887777766443
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.04 E-value=8.7e-10 Score=107.89 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..|...|..+.+.|++++|+..|++||+++|++.. ++..++.++..+ |+++++...+.......|.++..+..+
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDM--GDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTT--CHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHC--CChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 45778899999999999999999999999999885 788888888888 999998888888888888888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|.+|..+|++++|+..|++++..+|+|+..+..++.++...++...|+.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999998877765
No 63
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.03 E-value=2.4e-09 Score=117.69 Aligned_cols=131 Identities=13% Similarity=0.056 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 46 QELKEEGNKLFQKRDHGG----ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyee----Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
..+...|..|+..|++++ |+..|++|+.++|.+.. ++.++|.+++.. |++++|+..++++++++|++..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~--g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR----IVTLYADALIRT--GQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHH
Confidence 446678999999999986 89999999999998874 899999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCCC
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELPP 182 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~p 182 (429)
++.+|.+|..+|++++|+..|++++..+|++..+...++.++..+++...+.... +..+.|
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999999999877777788888888777766633 344444
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=7.3e-10 Score=89.40 Aligned_cols=84 Identities=29% Similarity=0.403 Sum_probs=73.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLD 136 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~d 136 (429)
..|+|+.|+..|++++...|.+. ...++.++|.||+++ |+|++|+..+++ +..+|.+...++.+|.||..+|+|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 36899999999999999999643 124677799999999 999999999999 8899999999999999999999999
Q ss_pred HHHHHHHHH
Q 014213 137 LAFRDVTTV 145 (429)
Q Consensus 137 eAl~~~~kA 145 (429)
+|+..|+++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 65
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=1.2e-09 Score=94.45 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=99.5
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
+.|++++.+.|.+.. +...+|.++... |++++|+..+++++.++|.+..+++++|.+|..+|++++|+..|+++
T Consensus 4 ~~~~~~l~~~p~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE----QIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhhHH----HHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999998874 788999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213 146 LNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP 181 (429)
Q Consensus 146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~ 181 (429)
+.++|.+...+..++.++..+++...+.. .....+.
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988777766 3344444
No 66
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=4.4e-09 Score=101.70 Aligned_cols=127 Identities=17% Similarity=0.083 Sum_probs=116.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+...|..++..|+|.+|+..+.+|..+.|+++. +|+.+|.+|.++ |++++|...|.+|+++.|..+..+.++|.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----~~~~lgaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE----AWNLLGAALDQL--GRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChh----hhhHHHHHHHHc--cChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 555899999999999999999999999999997 999999999999 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
.|...|+++.|...+..+....+.+..+..+++.+....++...+-.--.+++
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999999999999999999999999988887666544333334
No 67
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=6.5e-09 Score=105.00 Aligned_cols=116 Identities=12% Similarity=-0.040 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCCCHHH
Q 014213 45 SQELKEEGNKLFQKR-DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE--YPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 45 A~~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~--y~eAi~~~~~ALeldP~~~kA 121 (429)
...|..+|..+...+ ++++|+..+++++..+|++.. +|.+++.++.++ +. +.+++..++++|+++|++..|
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq----aW~~R~~~l~~l--~~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ----IWHHRRWLAEKL--GPDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH----HhHHHHHHHHHc--CchhhHHHHHHHHHHHHhCcccHHH
Confidence 345667777777777 578888888888888887774 788888888777 55 367788888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
|..|+.++..+|+|++|+.++.++|+++|.|..++..+..+...+
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888776654
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=3.6e-08 Score=96.99 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=98.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHH
Q 014213 46 QELKEEGNKL-FQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKA 121 (429)
Q Consensus 46 ~~lk~~Gn~l-f~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kA 121 (429)
...++.+..+ +..|+|++|+..|+..|...|++. ....+++.+|.+|+.. |+|++|+..|..++...|+ .+.+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~--g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNK--GKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3456666665 667999999999999999999874 2235788999999999 9999999999999998887 5779
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
++++|.+|..+|+++.|+..|++++...|++..+.....++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999998877666554
No 69
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6e-09 Score=107.39 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..|-..|..|....+-..|+..|++||+++|.+.. +|+.+|.+|--| +...=|+-+|++|+++.|.+++.|..+
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR----AWYGLGQaYeim--~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR----AWYGLGQAYEIM--KMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH----HHhhhhHHHHHh--cchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 34567899999999999999999999999999984 999999999999 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|.||..+++.++|+.+|.+|+...-.+..++..++.+++.+++...+..
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999988899999999999999987666554
No 70
>PRK15331 chaperone protein SicA; Provisional
Probab=98.96 E-value=1.1e-08 Score=93.30 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.-+.+...|-.+|+.|+|++|...|.-...++|.++. .+..+|.|+..+ ++|++|+..|..|..++++++...|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~--k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLK--KQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHcccCCCCccc
Confidence 3467888999999999999999999999999999985 889999999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
..|.||..+|+...|+..|..++. .|.+..........+..+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL 151 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999 566665555544444444
No 71
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=98.92 E-value=6.2e-09 Score=83.88 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=66.9
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCC-CCceEEEEECCCC-CEEEecChHHHHHHHHhhccCCcEEEEEEe
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPS-CRAVLIKYRDEEG-DLVTITTDEELRWAEASAEMQGSVRLFVVG 339 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~Dedg-Dliti~~~~dl~~a~~~~~~~~~~rl~v~e 339 (429)
-.|||||.. +..|.+|..++|.+|.++|++|+.. ...+.+.|+|++. ++|.+ +++||+.|.+.+. .|.+.||+..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~-~~~lTLwC~~ 79 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDVWSQAK-DGCLTLWCTL 79 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHHHHhhc-CCeEEEEEec
Confidence 479999975 9999999999999999999999965 5679999999885 89888 9999999999965 6889999874
No 72
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=7.7e-09 Score=104.44 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=113.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213 55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTPLYSKALLKRARCYEALN 133 (429)
Q Consensus 55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG 133 (429)
+...+.+++|+..+.++|.++|.+. ++|.+++.++..+ + .+++++..++++++.+|++..+|+.|+.++..+|
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L--~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEAL--DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHc--chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 5667899999999999999999988 4999999999999 7 6899999999999999999999999999999999
Q ss_pred CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccch
Q 014213 134 RL--DLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPK 195 (429)
Q Consensus 134 ~~--deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~ 195 (429)
+. ++++.++++++.++|.|-.++...+.+...++....++......|. ..|.....|..
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~ 181 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQ 181 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHH
Confidence 74 7899999999999999999999999999999877777664333333 23444555543
No 73
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.92 E-value=3e-08 Score=108.69 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
+..+..+||.+|..|++++|+..+.++|+.+|.+.. +|..+|.+|-++ |+.++|+..+..|-.++|.+...|.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 467889999999999999999999999999999996 999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELP 181 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~ 181 (429)
+|.-...+|.+..|.-+|.+|++++|.+.........++..+|+...|+..+..-++
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988886655554
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.91 E-value=8.9e-09 Score=119.80 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=105.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---------
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK--------- 120 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k--------- 120 (429)
..|..++..|++++|+..|+++++++|.+.. ++..+|.+|+++ |++++|+..|+++++++|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~----a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE----ALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 4588899999999999999999999998875 888999999999 9999999999999999987643
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 121 -----ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 121 -----Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
.+..+|.++...|++++|+..|++++.++|++..++..++.++..+++...+.......|
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 224557888899999999999999999999999999999999888887777766443333
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.91 E-value=4.8e-09 Score=80.20 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 88 nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
.+|..+++. |+|++|+..|+++++.+|++..+++.+|.++..+|++++|+..|++++.++|+++
T Consensus 2 ~~a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 467788888 8888888888888888888888888888888888888888888888888888875
No 76
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.91 E-value=2.6e-08 Score=108.68 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
+..+...|..++..|+|++|+..|++++..+|.+.. ++..+|.+++.. |+|++|+..+++++..+|.+..+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY----AKLGLAQLALAE--NRFDEARALIDEVLTADPGNVDALLL 198 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 456788999999999999999999999999998774 888999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+|.++...|++++|+..|++++.++|++..++..+..++...++...+..
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999888888877765554443
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.90 E-value=1.5e-08 Score=117.92 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+...|..++..|++++|+..|++++.++|.+.. ++.++|.+|+.+ |++++|+..|+++++++|++..++..++.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~----a~~~Lg~~~~~~--g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSY----AVLGLGDVAMAR--KDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456789999999999999999999999998874 888999999999 99999999999999999999887665544
Q ss_pred ------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 128 ------------------------------------------CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 128 ------------------------------------------ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
++...|++++|+..|++++.++|+++.++..++.++..
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999
Q ss_pred HHhhccccccc
Q 014213 166 LEKRGLRVNDT 176 (429)
Q Consensus 166 l~e~~~a~~e~ 176 (429)
+++...+....
T Consensus 508 ~G~~~~A~~~l 518 (1157)
T PRK11447 508 AGQRSQADALM 518 (1157)
T ss_pred cCCHHHHHHHH
Confidence 88877776633
No 78
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.90 E-value=2.1e-08 Score=112.10 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..+...|..+...|++++|+..|+++|.++|.+.. ++.+++.++... |++++|+..+++++..+|++.. ++.+
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l~~~--g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTLADA--GQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 34788999999999999999999999999999875 788999999999 9999999999999999999999 9999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
|.+|...|++++|+..|++++.+.|++..++..++.++...+...
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 999999999999999999999999999999998888776544433
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=3.6e-08 Score=93.54 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCCCH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM------GLSEYPRAIHECNLALEVTPLYS 119 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl------~~g~y~eAi~~~~~ALeldP~~~ 119 (429)
..+...|..+++.|++++|+..|+++++..|++.. ...+++++|.+|+.+ .++++++|+..+++++..+|++.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 35678899999999999999999999999998773 334688899999874 22689999999999999999986
Q ss_pred HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhccccc
Q 014213 120 KAL-----------------LKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 120 kAl-----------------~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~La~l~~~l~e~~~a~~ 174 (429)
.++ +.+|.+|...|++.+|+..|++++...|++ +.++..++.++..+++...+..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 542 467889999999999999999999997765 5789999999999988776655
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=9e-09 Score=102.94 Aligned_cols=128 Identities=23% Similarity=0.260 Sum_probs=112.6
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
+++.....+-+......++|.++++.+++.++.+|.....+...+--++.||..- +++.+||..|.++|+++|+++.+
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d--~~~~eAiqqC~evL~~d~~dv~~ 343 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED--EQFGEAIQQCKEVLDIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc--CCHHHHHHHHHHHHhcCchHHHH
Confidence 3556666677888999999999999999999999986553333455678899888 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL 171 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~ 171 (429)
|--||.+|..-..|+.|+.+|++|+.++|+|..++..+.+++....+.+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k 393 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK 393 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999887765443
No 81
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.85 E-value=5e-08 Score=98.78 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
....+...+..+...|+|++|+..|.+++...|.+.. ..+.++.++|.++... +++++|+..|+++++.+|++..++
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR--GDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhHCcCCHHHH
Confidence 3456777888888889999999999988888876543 2344677888888888 889999999999988888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhccccc
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKN-IMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n-~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+.+|.+|...|++++|+..|++++..+|.+ ..++..+..++..+++...+..
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888999988999999999999988888876 3456677777777666555544
No 82
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.84 E-value=3.9e-08 Score=107.34 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
...+...|..++..|+|++|+..|.+++...|.+. .+.+++.+|.++ |++++|+..+++++..+|++..+++.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-----NAIKLHRALLAS--GNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45577789999999999999999999999988763 667788899888 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+|.+|..+|++++|+..|++++...|+++.++..++.++..+++ ..+..
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 99999999999999999999999999999998888888877766 33444
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.83 E-value=5e-08 Score=98.77 Aligned_cols=103 Identities=11% Similarity=-0.009 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.+...|..++..|++++|+..|+.++...+........++.++|.+|+.+ |+|++|+..+.++++.+|.+..++..++
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~la 148 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA--GLLDRAEELFLQLVDEGDFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34444555555555555555555444432211111122344445555544 5555555555555544444444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
.+|...|++++|+..+++++...|.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCC
Confidence 5555555555555555554444443
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=7.2e-08 Score=92.11 Aligned_cols=121 Identities=18% Similarity=0.067 Sum_probs=108.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLYSKALLKR 125 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~~kAl~~r 125 (429)
+-.++..|-..|+.+.|-+.|++|+.+.|++.. +++|-|.-+... |+|++|...|++|+..- |..+..|-++
T Consensus 72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd----VLNNYG~FLC~q--g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 72 HLVRAHYYQKLGENDLADESYRKALSLAPNNGD----VLNNYGAFLCAQ--GRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----hhhhhhHHHHhC--CChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 556788889999999999999999999999996 999999999998 99999999999998742 4567899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|.|....|+++.|..+|+++|.++|+++.+...+.+.+..-++...+..
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999999999999999999999999888877776665544
No 85
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.80 E-value=1.2e-07 Score=84.79 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---A 121 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---A 121 (429)
+..+...|...++.|+|.+|+..|+......|... ....+...++.+|++. ++|++|+..+++-|+++|.++. |
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-YAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 36799999999999999999999999999999754 2335778899999999 9999999999999999998855 8
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 122 LLKRARCYEALNR---------------LDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 122 l~~rA~ay~~LG~---------------~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
||.+|.+++.+.. ...|+.+|+.++..-|++.-+.....
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 9999999999987 88999999999999999887655443
No 86
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.3e-08 Score=103.11 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~---~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.+.+.|-.+|..+.|.+|+..|+.++...+.... -+..+++|+|.+|.++ +.|++||..+++||.+.|.++.+|-
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl--~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL--NKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH--hhHHHHHHHHHHHHHcCCCchhHHH
Confidence 3678899999999999999999999854433221 1345799999999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
..|.+|..+|+++.|+.+|.++|.+.|+|..+...|..+...
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888866554
No 87
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.4e-07 Score=93.26 Aligned_cols=118 Identities=19% Similarity=0.108 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM-GLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl-~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
.++.|.-.|..|+..|++..|+..|.+|+++.|++++ ++..+|.+++.. +...-.++...++++|.+||.+++++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~----~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE----ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 4556889999999999999999999999999999996 777777776654 23457889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
+.+|..++..|+|.+|+..+++.|.+.|.+..-...+++....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999887666665554433
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=7.9e-08 Score=106.12 Aligned_cols=105 Identities=9% Similarity=-0.092 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
+.+..+.+.++.+++.+++++|+..+++++..+|++.. .++++|.|+.++ |+|++|+..|++++..+|++..++
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~----~~~~~a~~l~~~--g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR----EILLEAKSWDEI--GQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHh--cchHHHHHHHHHHHhcCCCcHHHH
Confidence 34456778999999999999999999999999999985 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
+.+|.++..+|+.++|...|++|+.+...-.
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999999999999865443
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=3.9e-08 Score=76.50 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=52.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 91 ACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 91 ~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
..|++. ++|++|+..+++++.++|+++.+|+.+|.+|..+|++.+|+.+|++++++.|+++.+....+.
T Consensus 3 ~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 3 QIYLQQ--EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHhC--CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 456666 778888888888888888888888888888888888888888888888888877776655543
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=99.25 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
-+-+-|.-+|+- ++|.+|+..|++||+++|.++-.|-+||.+|..||.|+.|+++++.||.++|+...+|..++.++.
T Consensus 83 ~LK~eGN~~m~~--~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKN--KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 345667778887 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccCCCCCCCCCcc
Q 014213 165 ELEKRGLRVNDTVIELPPEYVEPPVT 190 (429)
Q Consensus 165 ~l~e~~~a~~e~~~~L~p~~~~P~~~ 190 (429)
.+++...++..+.+.|+ ..|..+
T Consensus 161 ~~gk~~~A~~aykKaLe---ldP~Ne 183 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE---LDPDNE 183 (304)
T ss_pred ccCcHHHHHHHHHhhhc---cCCCcH
Confidence 99998888886555554 445544
No 91
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.76 E-value=2.4e-07 Score=81.85 Aligned_cols=104 Identities=26% Similarity=0.248 Sum_probs=95.0
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k 120 (429)
.++...++-.+|..+...|+.++|++.|.+||.+.|..+ ++|+|+|.+|.-. |+.++|+.++++|+++..+-.+
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra----SayNNRAQa~RLq--~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA----SAYNNRAQALRLQ--GDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch----HhhccHHHHHHHc--CChHHHHHHHHHHHHhcCccch
Confidence 468888899999999999999999999999999999887 5999999999888 9999999999999999865443
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 121 ----ALLKRARCYEALNRLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 121 ----Al~~rA~ay~~LG~~deAl~~~~kAL~l~P 150 (429)
+|..||..|..+|+-+.|..+|+.|-.+-.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 789999999999999999999999988754
No 92
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=2.2e-08 Score=76.45 Aligned_cols=64 Identities=27% Similarity=0.287 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS 119 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~ 119 (429)
.+|..+++.|+|++|+..|+++++..|.+.. ++..+|.|++.+ |++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE----AWYLLGRILYQQ--GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH----HHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence 5799999999999999999999999999875 999999999999 999999999999999999875
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.1e-08 Score=101.02 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--------VSYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
..+..++.+|..++-..+.+.|+..|+++|+++|..... .--.+-++|.-.++- |.|..|...|..||.+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~--G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN--GNYRKAYECYTEALNI 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc--cchhHHHHHHHHhhcC
Confidence 456778899999999999999999999999999986541 122456677777777 9999999999999999
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 115 TPLY----SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 115 dP~~----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
+|.+ .+.|++||.++..+|+.++|+.+++.|++|+|.-..++...++++..+++.+.++.+....+
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 55799999999999999999999999999999999999999999999999999998554443
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.72 E-value=4.2e-07 Score=88.37 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKA 121 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kA 121 (429)
+..+...|..++..|+|++|+..|++++...|..+ ....+..++|.+|+++ ++|++|+..+++.++..|++ ..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~--~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 45688999999999999999999999999999875 3445568899999999 99999999999999999987 457
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhccccc
Q 014213 122 LLKRARCYEALNR------------------LDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 122 l~~rA~ay~~LG~------------------~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~~~a~~ 174 (429)
+|.+|.++..+++ ...|+..|+..+..-|++. .+...+..+...|.++...+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866651 3578999999999999875 566666777777776665544
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.69 E-value=2.4e-07 Score=103.63 Aligned_cols=108 Identities=16% Similarity=0.012 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.+..+|..+...|++++|+..|++++...|.+.. ++.++|.+++.+ |++++|+..+++++.++|++..+++.+|
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQAR--GWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 4567888999999999999999999999999975 999999999999 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
.++..+|++++|+..++++++..|+++.+...-.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999997655433
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=1.3e-07 Score=102.48 Aligned_cols=129 Identities=16% Similarity=0.039 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.|...+..+...+.-++|..+..+|-.++|-.+ ..|+.+|.++... |.+.+|...|..|+.++|+++.....+|
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~----~~~~~~G~~~~~~--~~~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSA----SVYYLRGLLLEVK--GQLEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH----HHHHHhhHHHHHH--HhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 344555556666666777778888877777655 4777778888777 8888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213 127 RCYEALNRLDLAFR--DVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP 181 (429)
Q Consensus 127 ~ay~~LG~~deAl~--~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~ 181 (429)
.+|...|+...|.. .+..++.++|.|..+|..++.+.+.+|+-..+.+ ..+..|+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 88888887777777 7788888888888888888888888877666665 3345553
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.69 E-value=1.9e-07 Score=71.46 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
+++++|.+++.. |++++|+..+.+++...|.+..+++.+|.+|...+++++|+..|++++.+.|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL--GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578899999999 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhccccc
Q 014213 165 ELEKRGLRVN 174 (429)
Q Consensus 165 ~l~e~~~a~~ 174 (429)
.+++...+..
T Consensus 80 ~~~~~~~a~~ 89 (100)
T cd00189 80 KLGKYEEALE 89 (100)
T ss_pred HHHhHHHHHH
Confidence 8877665544
No 98
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.68 E-value=1.4e-07 Score=87.30 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213 61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--------LSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL 132 (429)
Q Consensus 61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--------~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L 132 (429)
|+.|...|+.++..+|.++. .+++=|.+++.|- ...+++|+.-+++||.++|+...|++.+|.||..+
T Consensus 7 FE~ark~aea~y~~nP~Dad----nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD----NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH----HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 67899999999999999886 5666666665540 02467899999999999999999999999999988
Q ss_pred CC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 133 NR-----------LDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 133 G~-----------~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
+. |+.|..+|++|+..+|+|...+..|....+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 75 788999999999999999999988887654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=5.8e-08 Score=102.34 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH----------------------------------------
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV---------------------------------------- 82 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~---------------------------------------- 82 (429)
+.++.|.-+|......++-..|+..+.+|++++|++-..+
T Consensus 317 ~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 317 QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 6788899999999999999999999999999998875411
Q ss_pred ---------------------------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 83 ---------------------------------SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 83 ---------------------------------a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
+.+++.+|..|.-. ++|++|+.+|+.||+.+|.+...|.++|-.+
T Consensus 397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls--~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS--GEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc--hHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 23667778887777 8999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213 130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~ 177 (429)
..-.+..+|+..|.+||+|-|+-..++.+++..+..++....|+....
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999988888877776443
No 100
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.67 E-value=9.1e-07 Score=83.38 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---H
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS---K 120 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~---k 120 (429)
.+..+...|..+++.|+|.+|+..|+..+...|.+. ....+...+|.+|++. ++|..|+..+++.+...|++. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~--~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQ--GDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCcchhh
Confidence 357899999999999999999999999999999865 4456778899999999 999999999999999999864 5
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhccccc
Q 014213 121 ALLKRARCYEALN-----------RLDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 121 Al~~rA~ay~~LG-----------~~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~~~a~~ 174 (429)
|+|.+|.+++.+. ....|+..|+..+..-|++. .+...+..+...|.++...+.
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999987764 24589999999999999985 566667778887776665544
No 101
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=98.67 E-value=1.5e-07 Score=79.06 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=63.2
Q ss_pred eEEEEe-CCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEE--CCCCC-EEEecChHHHHHHHHhhc----cCCcEE
Q 014213 263 TVKLVF-GEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYR--DEEGD-LVTITTDEELRWAEASAE----MQGSVR 334 (429)
Q Consensus 263 ~vK~~~-~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~--DedgD-liti~~~~dl~~a~~~~~----~~~~~r 334 (429)
.-|+.| |+|+|.+.|+.+++|.+|+.++.+.|.....+.|||. ++|-| ||+|+||+||..-++... ....+|
T Consensus 14 dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~~~~~~rir 93 (97)
T cd06410 14 DGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRLSGGSARLR 93 (97)
T ss_pred CCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHHhhccccCCCceEE
Confidence 345655 9999999999999999999999999977766999998 88888 999999999988877654 445566
Q ss_pred EEE
Q 014213 335 LFV 337 (429)
Q Consensus 335 l~v 337 (429)
+|+
T Consensus 94 vfl 96 (97)
T cd06410 94 VFL 96 (97)
T ss_pred EEE
Confidence 665
No 102
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=3.5e-07 Score=95.17 Aligned_cols=68 Identities=26% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT 115 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld 115 (429)
+..+.++|+.|+..|+|++|+..|++||+++|++.+ ...+|+|+|.||..+ |++++|+.++++|+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~L--Gr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYR--EEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999999874 113699999999999 99999999999999983
No 103
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.66 E-value=8.3e-08 Score=73.60 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.++..++.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 7888888888888888888888888888888888888888888888888888877777666553
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.65 E-value=1.1e-07 Score=97.30 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
+...|..++.. ++|++|+..|++||+++|++..+|+.+|.+|..+|++++|+.++++|+.++|++..++..++.++..
T Consensus 5 l~~~a~~a~~~--~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVD--DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45678888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccc--cccccCC
Q 014213 166 LEKRGLRVN--DTVIELP 181 (429)
Q Consensus 166 l~e~~~a~~--e~~~~L~ 181 (429)
+++...|.. +.+..+.
T Consensus 83 lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA 100 (356)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 998777776 4445555
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.64 E-value=2.3e-07 Score=72.11 Aligned_cols=70 Identities=31% Similarity=0.370 Sum_probs=64.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
.+.|++.++|+.|+..+++++.++|.++. +|..+|.||+++ |+|.+|+.+++++++.+|++..+..-++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46899999999999999999999999885 999999999999 99999999999999999999888766654
No 106
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.63 E-value=2.2e-07 Score=84.40 Aligned_cols=112 Identities=12% Similarity=-0.030 Sum_probs=95.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 014213 52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARC 128 (429)
Q Consensus 52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~a 128 (429)
.+.+|-...|..+...+...++..+.+. .+.+|+++|.++..+ |+|++|+..|.+|+.+.|+. ..+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 3556666778888888866666555433 467899999999999 99999999999999997763 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
|..+|++++|+..|++++.++|.+...+..++.++..++
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988555
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.63 E-value=4e-07 Score=102.28 Aligned_cols=125 Identities=15% Similarity=0.055 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
.+...++.+...++.|+|..|+..|.++++.+|.+.. .++ .++.++..+ |++++|+..|++++.-+|.+..++.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~---av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG---QVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh---hHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHH
Confidence 3456889999999999999999999999999999863 123 666777777 8888888888888844444555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
.+|.+|..+|+|+.|+..|++++..+|+++.++..+..++..+++...++.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 557788888888888888888888888888888777666666655555444
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.62 E-value=2.1e-07 Score=84.59 Aligned_cols=90 Identities=11% Similarity=0.009 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
..+.+|..++.. |++++|...|+.++.++|.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++.+...++.++-
T Consensus 37 ~lY~~A~~ly~~--G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEV--KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445588888888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccc
Q 014213 165 ELEKRGLRVNDT 176 (429)
Q Consensus 165 ~l~e~~~a~~e~ 176 (429)
.+++...+....
T Consensus 115 ~lG~~~~A~~aF 126 (157)
T PRK15363 115 ACDNVCYAIKAL 126 (157)
T ss_pred HcCCHHHHHHHH
Confidence 998877766633
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=7.2e-07 Score=92.82 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
....+-.+..+|..|++++|+..++..+...|+|+ +++..++..++.. +++++|++.+.+++.++|...-..++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~--nk~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEA--NKAKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCccHHHHH
Confidence 34567788899999999999999999999999998 5888899999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND 175 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e 175 (429)
+|.+|...|++.+|+..++..+.-+|+++..|..|++.+..++....+...
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 999999999999999999999999999999999999999999876666553
No 110
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=1.5e-06 Score=85.02 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKAL 122 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl 122 (429)
..+++.+..+++.|+|.+|...|..-|...|++. ..+.+++-+|.|++.+ |+|++|...|..++.-.|++ +.++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~q--g~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQ--GDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhc--ccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 4489999999999999999999999999999865 3345677789999999 99999999999999988776 5679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
+.+|.|...+|+.++|...|+.+++--|+...+......+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999887665554
No 111
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.58 E-value=2.9e-08 Score=99.33 Aligned_cols=107 Identities=19% Similarity=0.304 Sum_probs=100.6
Q ss_pred HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213 39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY 118 (429)
Q Consensus 39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~ 118 (429)
....++|...+-.+..++..|.++.|++.|..||.++|.... +|.+++.++++| +.+..||.+|..|++++|+.
T Consensus 108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~----l~~kr~sv~lkl--~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI----LYAKRASVFLKL--KKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh----hcccccceeeec--cCCchhhhhhhhhhccCccc
Confidence 344588899999999999999999999999999999998875 999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
.+.|--++.+...+|+|++|-.++..|.+++-+
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999753
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=97.94 Aligned_cols=132 Identities=17% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213 59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138 (429)
Q Consensus 59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA 138 (429)
.+|.+|-.+-+.|+.++..++. ++.|.|..-+.- |+|++|...|..||.-+..+..|+|+.|..+..+|++++|
T Consensus 470 k~~~~aqqyad~aln~dryn~~----a~~nkgn~~f~n--gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldea 543 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAA----ALTNKGNIAFAN--GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEA 543 (840)
T ss_pred cchhHHHHHHHHHhcccccCHH----HhhcCCceeeec--CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHH
Confidence 3566666666666666665553 556666554444 6777777777777766666667777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhhh
Q 014213 139 FRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKE 199 (429)
Q Consensus 139 l~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k~ 199 (429)
+.+|-+...+--++.+++..++.++..|+....+++...+... +.|++++.+.+++-=
T Consensus 544 ld~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~dl 601 (840)
T KOG2003|consen 544 LDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHHH
Confidence 7777666666666667777777777766666666654443333 556666666665553
No 113
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.56 E-value=1.6e-06 Score=75.65 Aligned_cols=99 Identities=19% Similarity=0.060 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKAL 122 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kAl 122 (429)
..+++.|..+-..|+.++|+..|++|+...+... .+..++.++|.+|..+ |++++|+..++.++...|+ +....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~L--G~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNL--GRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 3578899999999999999999999999766544 4567889999999999 9999999999999999888 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
.-++.++..+|++++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999988886
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=2.2e-07 Score=96.64 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA---LLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA---l~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
+.+|+|+|.+|+++ |+|++|+..|++||+++|++..+ ||++|.||..+|++++|+.+|++|+.+
T Consensus 75 a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35999999999999 99999999999999999999865 999999999999999999999999998
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=1.6e-07 Score=72.02 Aligned_cols=67 Identities=27% Similarity=0.288 Sum_probs=60.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+++.|+|++|+..|++++..+|.+.. ++..+|.||++. |++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQ--GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHT--T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 57899999999999999999999886 889999999999 99999999999999999998777776664
No 116
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.52 E-value=1.5e-07 Score=92.03 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
+......++..++++++...+.++.... +.++ .+|..+|.+|.+. |++++|+..+++||+++|++..++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~a~~~~~~--G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA----RFWLALAEIYEQL--GDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-H----HHHHHHHHHHHHC--CHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4445566778888888888888877644 2232 4777888888888 888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~ 177 (429)
+.++...|+++++...+.......|+++..+..++.++..+++...|.....
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 8888888888888888888777778888888888888888887777766433
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.2e-07 Score=95.70 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
+..+.+.||..|.+|+++.|++.|.+||.-+..-. .+++|+|..+-.+ |+.++|+..|-+.-.+--++...++.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~--~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEAL--GNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHh--cCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 56678999999999999999999999998665433 4889999999999 99999999999887777789999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+|.+|..+.+...|++.+..+.++-|+++.++..|+.++..-+++..+..
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 99999999999999999999999999999999999999998888877765
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.50 E-value=1.4e-06 Score=77.51 Aligned_cols=129 Identities=19% Similarity=0.118 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---H
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---S 119 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~ 119 (429)
..+...+......+..+++..+...++..+.-.|... ....++..+|.+++.. |+|++|+..++.++...|+. .
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~--g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQ--GDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCHHHHH
Confidence 4567777788888888888888888888888888763 2234667788888888 88888888888888877654 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND 175 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e 175 (429)
.+.+++|.++...|+|++|+..++. +.-.+-.+.+...++.++...++...+...
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888888888888888865 333444567888888888888777666553
No 119
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=2.7e-07 Score=87.71 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
.+|.-++++|+.|=..|-+.-|-..|+++|.+.|.-+. +++.+|..+..- |+|+.|.+.|+..+++||.+--|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~----vfNyLG~Yl~~a--~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE----VFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH----HHHHHHHHHHhc--ccchHHHHHhhhHhccCCcchHHH
Confidence 56677889999999999999999999999999998885 899999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
.+||.+++--|+|..|.+++.+...-+|+++-
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999999999873
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.49 E-value=1.7e-06 Score=92.88 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHh
Q 014213 44 MSQELKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGL------SEYPRAIHECNLALEV 114 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~------g~y~eAi~~~~~ALel 114 (429)
.|-.+..+|..++..++ +..|+.+|++|++++|+++. +|..++.||..... .++..+.....+++.+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34567888888887666 88999999999999999874 77777777755410 1234556666666664
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213 115 --TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP 182 (429)
Q Consensus 115 --dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p 182 (429)
+|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++.++...|+...+.. +++..|+|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 777888999999999999999999999999999999 57899999999999988777777 45666664
No 121
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=1.6e-06 Score=90.48 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=108.4
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCCccHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHh
Q 014213 48 LKEEGNKLFQKRD---HGGALLKYEKAL---KLLPRNHIDVSYLRSNMAACYMQMG-------LSEYPRAIHECNLALEV 114 (429)
Q Consensus 48 lk~~Gn~lf~~gd---yeeAl~~Y~kAL---el~P~~~~~~a~l~~nrA~~y~kl~-------~g~y~eAi~~~~~ALel 114 (429)
+.-+|...+..+. .+.|+.+|.+|+ .++|.... +|+.+|.||+.+. .....+|+..+.+|+++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~----a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE----CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 4556666655554 467899999999 88887774 8999999998751 23456788899999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213 115 TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP 181 (429)
Q Consensus 115 dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~ 181 (429)
+|.++.|++.+|.++...++++.|+..|++|+.++|+.+.++...+.+...-++...+.. +++..|+
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999888877666655 5555665
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=5.4e-06 Score=73.67 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
.......|..++..|+|++|+..|+.++...|.. .....++..+|.+++.. |+|++|+..++. +.-.+-.+.++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~--~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLARILLQQ--GQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHc--CCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 4456678999999999999999999999987543 34556788899999999 999999999966 3333445668889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 014213 125 RARCYEALNRLDLAFRDVTTVL 146 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL 146 (429)
+|.+|...|++++|...|++||
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999885
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=3.3e-06 Score=88.03 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+-..|..++..+++.+|++.|++++.++|.... +..|+|.+|+++ |++.+|+..++..+.-+|+++..|..+|+
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~--g~~~eai~~L~~~~~~~p~dp~~w~~LAq 416 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKG--GKPQEAIRILNRYLFNDPEDPNGWDLLAQ 416 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhc--CChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 445688999999999999999999999999874 999999999999 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
+|..+|+-.+|+..+-..+.+..+-..+...+.++...+
T Consensus 417 ay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 417 AYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988888888877776655
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=4.1e-07 Score=71.84 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-------PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-------P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
.+.++.++|.+|..+ |+|++|+..|++++++. |....+++++|.+|..+|++++|+.++++|+++
T Consensus 4 ~a~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYREL--GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456777777777777 77777777777777552 122456777777777777777777777777765
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.45 E-value=2.5e-06 Score=77.91 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI 158 (429)
Q Consensus 82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~ 158 (429)
.+.+++++|.+|+.+ |+|++|+..|++++.+.|+. ..+++.+|.+|..+|++++|+..|++++.+.|++..++..
T Consensus 34 ~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 456889999999999 99999999999999988764 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 014213 159 AERVKKELEK 168 (429)
Q Consensus 159 La~l~~~l~e 168 (429)
++.++..+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 9988877655
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.45 E-value=1.4e-06 Score=72.75 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEI 158 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~ 158 (429)
.++++|..++.. |+|++|+..|..++..+|++ ..+++.+|.+|...|++++|+..|+.++...|++ ..++..
T Consensus 4 ~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 678899999999 99999999999999999887 5799999999999999999999999999999986 578888
Q ss_pred HHHHHHHHHhhccccc
Q 014213 159 AERVKKELEKRGLRVN 174 (429)
Q Consensus 159 La~l~~~l~e~~~a~~ 174 (429)
++.++..+++...+..
T Consensus 82 ~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHhCChHHHHH
Confidence 8999888877666555
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=1.3e-06 Score=84.72 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=106.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
....+.++..|+-+.++....+++...|.+.. ++.-.|..+.+. |+|.+|+..+++|..++|+++++|..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~--g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRN--GNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHh--cchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34677788888888888888888887887764 555588888888 999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|..+|++++|-..|.+++++.|+++.+..+++-.+..-++...+..
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999888887766655
No 128
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.8e-07 Score=90.46 Aligned_cols=126 Identities=29% Similarity=0.334 Sum_probs=111.1
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC------------CccHHHHHHHHHHHHHHcCCCCHHHHH
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP---RN------------HIDVSYLRSNMAACYMQMGLSEYPRAI 105 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P---~~------------~~~~a~l~~nrA~~y~kl~~g~y~eAi 105 (429)
.+..+...++.|+..|++++|..|+..|.++++... .+ ...+..++.|++.|-+++ +.|..|+
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~--~~~~~a~ 295 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKV--KGRGGAR 295 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccc--cCCCcce
Confidence 357888899999999999999999999999998753 11 112356788899999999 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 106 ~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
..+..+++.++...++||+++.+|..+.++++|+++++.+....|++......+..+...+.+
T Consensus 296 ~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 296 FRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred eccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999988888887776644
No 129
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=2.2e-06 Score=85.88 Aligned_cols=103 Identities=21% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH---------------------------------HHHHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV---------------------------------SYLRSNMAAC 92 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~---------------------------------a~l~~nrA~~ 92 (429)
+....+|..++..|++++|+..|+++++..|.+.... ..++.++|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 3455689999999999999999999999999876300 1222334444
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 93 YMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 93 y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P 150 (429)
++.+ |++++|+..|+++++++|++..+++.+|.+|+..|++++|+..+++++.+.|
T Consensus 124 ~~~~--G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 124 LEEA--GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHc--CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 4444 4555555555555555555544455555555555555555555555554444
No 130
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=98.43 E-value=4.9e-07 Score=72.27 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=59.8
Q ss_pred ceeEEEEeCCceEEEEc-cCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh
Q 014213 261 KKTVKLVFGEDIRVAQL-PLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA 327 (429)
Q Consensus 261 ~~~vK~~~~~DiR~~~i-~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~ 327 (429)
-++||..-|+|+-|.+- |..++|.++.+.|++..|....-..-|.|||||.||+-||+||+--+++.
T Consensus 2 VIRIk~p~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRITVRSDeEm~AMlsyy 69 (91)
T cd06395 2 VIRIKIPNGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYY 69 (91)
T ss_pred eEEEeCCCCCcccccccCcccccHHHHHHHHHHhcccccccceeeccccCCeeEecchHHHHHHHHHH
Confidence 36899999999999885 46699999999999999999999999999999999999999998666543
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.41 E-value=1.4e-06 Score=68.68 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL---PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~---P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
..+..+.+.|..|+..|+|++|+..|++|+.+. +.+.+..+.++.|+|.||..+ |++++|+..+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL--GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999873 333345688999999999999 9999999999999986
No 132
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=91.76 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=100.0
Q ss_pred HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCC
Q 014213 39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPL 117 (429)
Q Consensus 39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~ 117 (429)
-.+...++.++.+||..|-.+....|+..|.+++...|... .+|.|+|+++|+-+ .|+.-.|+.+|..|++++|.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~----~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI----YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS 443 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh----HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence 34456778899999999999999999999999999999877 49999999999853 35777899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA 156 (429)
Q Consensus 118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~ 156 (429)
..+|+|+++.|+..++++.+|+.+...+....|.+....
T Consensus 444 ~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 444 IQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 999999999999999999999999887777788665433
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.40 E-value=2.4e-06 Score=94.68 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-SKALLK 124 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-~kAl~~ 124 (429)
..+.-.++-+|-.|+|..+...+..|+...-..+ ..+-.++.+|.+|..+ |+|++|..+|.+++..+|++ .-+++.
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~--Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQ--GDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccCCCCccccccc
Confidence 4466778889999999999999999998774433 3455688899999999 99999999999999999998 888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
+|+.|...|+++.|..+|++++...|++......++.++...+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 9999999999999999999999999999999999999988774
No 134
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.7e-06 Score=88.07 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=86.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-------PLYSKALL 123 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-------P~~~kAl~ 123 (429)
.|..|.+.+++.-|-..|.+|+.+.|.++- ++.-+|.+.+.. +.|.+|+.+|..+++.- +.|...+.
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl----v~~Elgvvay~~--~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPL----VLHELGVVAYTY--EEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcch----hhhhhhheeehH--hhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 344444444445555555555555554442 445555555555 56666666666666221 23556689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
++|.+|+.++++++|+..|+++|.+.|.++.++..++-++..++....|+...-..|
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888887443333
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.36 E-value=3.6e-06 Score=91.50 Aligned_cols=105 Identities=19% Similarity=0.091 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCCCCHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH--ECNLALEVTPLYSKA 121 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~--~~~~ALeldP~~~kA 121 (429)
-+..|+..|..+..+|.+.+|...|..|+.++|++.+ ....+|.||++. |+-.-|.. ....|+++||.+.+|
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~----s~~Ala~~lle~--G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP----SMTALAELLLEL--GSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHh--CCcchHHHHHHHHHHHhhCCCCHHH
Confidence 3455788999999999999999999999999999986 778899999999 65555555 999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
||.+|.++..+|+.+.|.++|..|+.+++.+|.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999998863
No 136
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.35 E-value=3.8e-06 Score=84.15 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----SKAL 122 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----~kAl 122 (429)
.+...|..+...|++++|+..|++++++.|.+.. ++..+|.+|... |++++|+..+.+++...|.. ...|
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~----~~~~la~i~~~~--g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW----AVHAVAHVLEMQ--GRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHc--CCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 3456788999999999999999999999999874 889999999999 99999999999999998743 2457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
+.+|.++..+|++++|+..|++++...|.
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 78999999999999999999999888774
No 137
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.34 E-value=4.7e-06 Score=88.89 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLP----RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT----- 115 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P----~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld----- 115 (429)
+..++..|..|...++|.+|+..|++||.+.- .+++..+.++.|+|.+|... |+|.+|...|++|+++-
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~ 318 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLG 318 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhc
Confidence 44456799999999999999999999999764 45667889999999999999 99999999999999873
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhhccccc
Q 014213 116 ---PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKE-----PKN---IMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 116 ---P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~-----P~n---~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|.-...+..++..+..++++++|+..+.+++++- +.| +.....+++++..+++...+.+
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 3345578899999999999999999999999872 233 5678888999988887666555
No 138
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=8.2e-06 Score=81.56 Aligned_cols=124 Identities=19% Similarity=0.132 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH-IDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~-~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
++...-+.|-+.++|+.|++.-.+.+.+.+... ..++.+||-+|..++.- .+.+.|+..+.+|++.+|++++|-.-+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~--~~~d~A~~~l~kAlqa~~~cvRAsi~l 220 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS--SDVDRARELLKKALQADKKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhCccceehhhhh
Confidence 345566778888889999988888888877543 36889999999999988 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKN-IMAAEIAERVKKELEKRGLR 172 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n-~~a~~~La~l~~~l~e~~~a 172 (429)
|.++...|+|+.|++.++++++.+|.- +++...+..++..+++.+..
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999985 57888899999998875543
No 139
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=94.69 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
..|+..+.+++|++|...++..++++|-... .|+++|.|++++ +++..|..+|.+++.++|++..+|.+++.+|
T Consensus 490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~----~wf~~G~~ALql--ek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 490 SLALLILSNKDFSEADKHLERSLEINPLQLG----TWFGLGCAALQL--EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCccchh----HHHhccHHHHHH--hhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 3445556779999999999999999998775 889999999999 9999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213 130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND 175 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e 175 (429)
..+++-.+|...+.+|++.+-.+..+|++..-+...+++...+...
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 9999999999999999999988889999888888888776666553
No 140
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=2e-05 Score=81.93 Aligned_cols=126 Identities=18% Similarity=0.051 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-HH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS-KA 121 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~-kA 121 (429)
+++.....+|...+..|+|+.|.....++.+..|... ..+...|.++.++ |+++.|...+.++.+..|++. .+
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHH
Confidence 4677778899999999999999999999999888654 3556678888888 999999999999999999985 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
...++..+...|+++.|+..+++.++..|+++.++..+..++...++...+..
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 66679999999999999999999999999999999999999999988776655
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=8.4e-06 Score=80.72 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HH
Q 014213 60 DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR---LD 136 (429)
Q Consensus 60 dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~---~d 136 (429)
..+..+...+.-|..+|+|.+ -|..+|.+||.+ +++..|...|.+|+++.|+++..+..+|.+++.... -.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~e----gW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAE----GWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccH
Confidence 366777888999999999997 888999999999 999999999999999999999999999998876653 56
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213 137 LAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELP 181 (429)
Q Consensus 137 eAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~ 181 (429)
+|...|++++.++|+|..++..++......++...+...-..-|+
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 899999999999999999999999999999888887774343443
No 142
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.30 E-value=7.8e-06 Score=92.09 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+...|..+...|+|++|+..|+++++.+|.++. ++..++.+|..+ +++++|+..+.+++..+|.+... ..++.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~----~l~gLa~~y~~~--~q~~eAl~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPD----LISGMIMTQADA--GRGGVVLKQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhhc--CCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 444577888899999999999999999999875 667788899998 99999999999999999985554 55566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
++..++++.+|+..|++++.++|++..++..+-.+...++-
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 66667888779999999999999999988887777666643
No 143
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.29 E-value=1.4e-05 Score=88.17 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
...|...|..|=++|+.+.|+..+-.|-.++|.+.+ .|..++....++ |++.+|+-+|.+||+++|.+.+.+++
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ladls~~~--~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKRLADLSEQL--GNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhc--ccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 455778899999999999999999999999999997 888889988898 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P 150 (429)
++..|..+|++..|+..|.+++.+.|
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.29 E-value=8e-06 Score=90.66 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
-+|+.++..|..|+..|+|++|..+|.+++..+|++.. ..++.+|..|+.. |+++.|+..|++++...|++..++
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~---l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV---LPLVGLGQMYIKR--GDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc---ccccchhHHHHHh--chHHHHHHHHHHHHHhCcchHHHH
Confidence 45777999999999999999999999999999999853 4577788888888 999999999999999999999999
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 123 LKRARCYEALN----RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 123 ~~rA~ay~~LG----~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
.-+|..|...+ ..+.|...+.+++...|.+..++..++.++..-
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 99999999987 678999999999999999999999999987654
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=1.1e-05 Score=91.01 Aligned_cols=115 Identities=12% Similarity=-0.076 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS---- 119 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~---- 119 (429)
....+....+.+...+++++|+..+..+++..|+... +|+.+|..|++. +++.+|... .++.+-+.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~----~yy~~G~l~~q~--~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS----ALYISGILSLSR--RPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee----hHHHHHHHHHhh--cchhhhhhh--hhhhhcccccchhH
Confidence 3456778888888999999999999999999999885 888889899888 888877766 6777666665
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 120 ---------------KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 120 ---------------kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
.||+.+|.||..+|++++|...|+++|.++|+|+.++..++-.+...
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999877666
No 146
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.25 E-value=1e-05 Score=86.36 Aligned_cols=128 Identities=18% Similarity=0.118 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR----NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---- 115 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~----~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---- 115 (429)
-|..+.++|..|+..|+|++|..+|++|+++.-. ++++.+..+++++..+..+ ++|++|+..+.+++.+-
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~--~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM--NEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999999999999998643 4556788999999999999 99999999999998763
Q ss_pred -C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHhhcccc
Q 014213 116 -P---LYSKALLKRARCYEALNRLDLAFRDVTTVLNKE--------PKNIMAAEIAERVKKELEKRGLRV 173 (429)
Q Consensus 116 -P---~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~--------P~n~~a~~~La~l~~~l~e~~~a~ 173 (429)
+ .-.+.+-++|.+|..+|+|.+|.+.|++|+.+. +.....+..++..+..++.+..+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 2 336789999999999999999999999999874 334567778888887776655443
No 147
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.25 E-value=1.6e-05 Score=82.55 Aligned_cols=126 Identities=8% Similarity=-0.110 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--HH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS--KA 121 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~--kA 121 (429)
....+...|..+...|++++|+..++++++..|++.... +..-+...+ +.+++...++..++++++..|+++ ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHH
Confidence 345567788999999999999999999999999877311 012222233 334899999999999999999999 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 122 LLKRARCYEALNRLDLAFRDVT--TVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~--kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+..+|.++..+|+|++|.++|+ .+++..|++..+ ..++.++..+++...+..
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHHHH
Confidence 8899999999999999999999 588888987764 489999998887666655
No 148
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.24 E-value=3.3e-05 Score=80.10 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNM-AACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nr-A~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
+++.....+|...+..|+|+.|.....++-+..+ ++ .++..+ +.+..+. |+++.|...+.++.+.+|++.-+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p----~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~~~~~~~~ 154 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QP----VVNYLLAAEAAQQR--GDEARANQHLERAAELADNDQLP 154 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-ch----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCcchHH
Confidence 5777888999999999999999966666544322 22 244444 4444777 99999999999999999998544
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 122 -LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 122 -l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
....+..+...|+++.|+..+++++..+|+++.++..+..++...++...+..
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 45569999999999999999999999999999999999999999988776653
No 149
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=2e-06 Score=86.00 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=91.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH------------------------------HHHHHHHHHHHHHcCCCC
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDV------------------------------SYLRSNMAACYMQMGLSE 100 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~------------------------------a~l~~nrA~~y~kl~~g~ 100 (429)
.+..+-..+++++|+++|..++++.|.+.+.+ .-+++|+|.|-+-- ++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya--qQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA--QQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh--cc
Confidence 34444445556666666666666665543311 24899999999888 99
Q ss_pred HHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213 101 YPRAIHECNLALEVTP--L-YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR 169 (429)
Q Consensus 101 y~eAi~~~~~ALeldP--~-~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~ 169 (429)
|+-++..+.+|+...- . -...||++|.+....|++..|.++|+-||..+|+|.+++.+++-+..+-++-
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 9999999999998753 2 4678999999999999999999999999999999999999999988766543
No 150
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.21 E-value=6.5e-06 Score=88.12 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.++.+....|..++|...+...+.+|.-.|.+++ .+...|..+..| |+-++|...+..++..|+...-.|.-+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHH
Confidence 4677788888899999999999999999998887 556678888888 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccc
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAP 194 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a 194 (429)
..+..-.+|++|+.+|+.||.++|+|.+.+.-++-++..|++........-.-|. ..|.--+.|-
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq---l~~~~ra~w~ 147 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ---LRPSQRASWI 147 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHHHH
Confidence 9999999999999999999999999999999999998888876655554433443 3344444443
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=2.9e-05 Score=75.43 Aligned_cols=114 Identities=19% Similarity=0.071 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
+-.|..+=..|+|++|+++|+..|+-+|.+.. +|-..-+..-.+ |.--+||...+.-++.-+.+..||..++..
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~--GK~l~aIk~ln~YL~~F~~D~EAW~eLaei 163 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQ--GKNLEAIKELNEYLDKFMNDQEAWHELAEI 163 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34577778899999999999999999998874 555554555556 888999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
|..+|+|+.|.-+++.++-+.|.++.....++.++.-++.
T Consensus 164 Y~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 164 YLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888864
No 152
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.15 E-value=8.7e-06 Score=81.83 Aligned_cols=94 Identities=23% Similarity=0.299 Sum_probs=74.5
Q ss_pred cCCCCceeEEEEeCCceEEEEccCCccHHHHHHHHHhhC--CCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCc-
Q 014213 256 EDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRF--PSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGS- 332 (429)
Q Consensus 256 ~~~~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf--~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~- 332 (429)
++....+++|++|+.||....+.+.++|.+|...|++-- -....|++||.|||||-+||+|+.||..|+.++.....
T Consensus 10 ~g~~~~vrlka~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d~ 89 (593)
T KOG0695|consen 10 EGSGGRVRLKAHYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRDE 89 (593)
T ss_pred CCCCccEEEEEeecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhcccc
Confidence 344568999999999999999999999999999999854 45567999999999999999999999999998755444
Q ss_pred -EEEEEEeeCCCCchhhhh
Q 014213 333 -VRLFVVGVNPLQDPLYER 350 (429)
Q Consensus 333 -~rl~v~e~~~~~e~~~~~ 350 (429)
+-++|....| .-|.++.
T Consensus 90 el~ihvf~~~p-e~pglpc 107 (593)
T KOG0695|consen 90 ELIIHVFPSTP-EQPGLPC 107 (593)
T ss_pred ceEEEEccCCC-CCCCCCC
Confidence 4444443333 3454443
No 153
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=98.14 E-value=1.1e-05 Score=65.76 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=46.9
Q ss_pred CceEEEEcc----CCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh
Q 014213 270 EDIRVAQLP----LNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA 327 (429)
Q Consensus 270 ~DiR~~~i~----~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~ 327 (429)
-+||-+.|. ...+|.+|...+++.|+ ...+.+-|+|.|||||-|-||+|+.+-+.-+
T Consensus 13 ~~~rdi~vee~l~~~P~~kdLl~lmr~~f~-~~dIaLNYrD~EGDLIRllddeDv~LMV~~~ 73 (92)
T cd06399 13 STIRDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLIRLLSDEDVALMVRQS 73 (92)
T ss_pred ccccceEeecccccCccHHHHHHHHHHHhc-hhheeeeeecCCCCEEEEcchhhHHHHHHHH
Confidence 345555543 44699999999999995 6699999999999999999999997776655
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.06 E-value=4.6e-06 Score=67.09 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 99 SEYPRAIHECNLALEVTPL--YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~--~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
++|+.|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ +..+|.+......+++++..+++...++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8999999999999999995 466788899999999999999999999 88999999999999999999988776654
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=7.1e-05 Score=74.98 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=103.3
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-HH
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-SK 120 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-~k 120 (429)
+..|+-+-+.+..+....+++.|+..+.+|+..+|+..- +-..+|..++.. |+|+.|+..++.+++.||++ +.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~--g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----ASIILGRVELAK--GDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hhhhhhHHHHhc--cchHHHHHHHHHHHHhChHHHHH
Confidence 367888999999999999999999999999999998874 666789999999 99999999999999999998 55
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
.+-.+..||..+|+.++.+..+.++....++. .+...+..+...+....
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGID 299 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChH
Confidence 78888999999999999999999999988764 34444444444443333
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=4.2e-05 Score=79.50 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=96.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213 58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL 137 (429)
Q Consensus 58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de 137 (429)
.++|+.|+..|++..+.+|. +..-+|.+|+.+ ++..+|+....++|..+|.+...+..-|..|...++++.
T Consensus 182 t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~--~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE-------VAVLLARVYLLM--NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 56799999999998888774 334578888888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 138 AFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 138 Al~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
|+..+++|+.+.|++...|..|+.++..+++...|+.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999988777654
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.5e-05 Score=80.32 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..+..|+--|..+|...+|..|+.+-.++|+.+|++.+ ++...|.++.++ ++.++|+-.|+.|..+.|.....|
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~----alilKG~lL~~~--~R~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE----ALILKGRLLIAL--ERHTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch----HHHhccHHHHhc--cchHHHHHHHHHHHhcchhhHHHH
Confidence 34667788888888889999999999999999998886 778888888888 899999999999999999888889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
-.+-.||.+.|++.+|+-..+.++..-|+++.++..++
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 88889999999999999888888888888888877775
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=98.02 E-value=5e-05 Score=79.45 Aligned_cols=92 Identities=12% Similarity=-0.069 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213 58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL 137 (429)
Q Consensus 58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de 137 (429)
..+-.+|+..-.+|++++|.|+ .++..+|.++... ++++.|+..+++|+.++|++..+||.+|..+...|+.++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da----~a~~~~g~~~~~~--~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDG----KILAIMGLITGLS--GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhh--cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 3456789999999999999998 4888899988888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 014213 138 AFRDVTTVLNKEPKNIMA 155 (429)
Q Consensus 138 Al~~~~kAL~l~P~n~~a 155 (429)
|+..+++|+.++|.-..+
T Consensus 391 a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHhccCchhhHH
Confidence 999999999999976544
No 159
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.01 E-value=6.8e-05 Score=77.71 Aligned_cols=122 Identities=9% Similarity=-0.071 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
......+..+...|++++|.....++++..| ++. +...|..+..+++++++..++..++..|+++..++.+
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~--------l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER--------LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH--------HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455678999999999999999999999444 442 2223333333899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~ 177 (429)
|..+...++|++|..+|++++++.|++.. ...++.++..+++...+...+.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998765 4578999999988777766443
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=6.5e-05 Score=65.60 Aligned_cols=91 Identities=18% Similarity=0.075 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK---NIMAAEI 158 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~---n~~a~~~ 158 (429)
+++++|.+|-.+ |+.++|+..|++|+..... -..+++.+|.+|..+|++++|+..+++++...|+ +......
T Consensus 3 ~~~~~A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 678999999999 9999999999999997644 3679999999999999999999999999999898 7778878
Q ss_pred HHHHHHHHHhhcccccccc
Q 014213 159 AERVKKELEKRGLRVNDTV 177 (429)
Q Consensus 159 La~l~~~l~e~~~a~~e~~ 177 (429)
++.+...+++...++....
T Consensus 81 ~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 8888888887777766443
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00011 Score=76.28 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
..-.+..++..++..+|+..+.++|...|.+.. ++...|..+++. ++|+.|+..+++|+.+.|+...+|+.+|.
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~----LL~~Qa~fLl~k--~~~~lAL~iAk~av~lsP~~f~~W~~La~ 276 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE----LLNLQAEFLLSK--KKYELALEIAKKAVELSPSEFETWYQLAE 276 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 445688888899999999999999999998874 888889999998 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 014213 128 CYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~ 147 (429)
||..+|+|++|+..++.+--
T Consensus 277 ~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 277 CYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHhcCcC
Confidence 99999999999977664433
No 162
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.97 E-value=0.00027 Score=61.63 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--------VSYLRSNMAACYMQMGLSEYPRAIHECNLALE------ 113 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe------ 113 (429)
....|...++.|.|++|...|.+|++..-.-++. -+.+|..++.++..| |+|++++....+||.
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L--gry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL--GRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcc
Confidence 3456778889999999999999999987544331 367889999999999 999999999999984
Q ss_pred -hCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 114 -VTPL----YSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 114 -ldP~----~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
++.+ |+.+.+++|.++..+|+.++|+..|+++-.+
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4444 6778899999999999999999999988765
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=8.6e-05 Score=79.85 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213 61 HGGALLKYEKALKL--LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138 (429)
Q Consensus 61 yeeAl~~Y~kALel--~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA 138 (429)
...|.....+++.+ +|.++ .+|.-+|..++.. |++++|...+++|+.++| +..+|..+|.+|...|++++|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~----~~~~ala~~~~~~--g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLP----RIYEILAVQALVK--GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred HHHHHHHHHHhhhcccCcCCh----HHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666664 44444 4777788888877 999999999999999999 578999999999999999999
Q ss_pred HHHHHHHHHhCCCCHH
Q 014213 139 FRDVTTVLNKEPKNIM 154 (429)
Q Consensus 139 l~~~~kAL~l~P~n~~ 154 (429)
+..|++|+.++|.++.
T Consensus 473 ~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 473 ADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHhcCCCCch
Confidence 9999999999999875
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.2e-05 Score=76.78 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..+.+.+..+.+.++|..|+..++++|+++|+|.- +++.+|.||+.+ ++|+.|+.+|++|++++|.|-.+..-+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----ALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----ALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44678899999999999999999999999999995 999999999999 999999999999999999998888888
Q ss_pred HHHHHHcCCHHHH-HHHHHHHHHh
Q 014213 126 ARCYEALNRLDLA-FRDVTTVLNK 148 (429)
Q Consensus 126 A~ay~~LG~~deA-l~~~~kAL~l 148 (429)
..|.....++.+. -+.|.+.+..
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777776666544 5556655554
No 165
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=3e-05 Score=77.72 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+......|-.-.+...|+..|.+.|+..|.+. ++++..|..|-.| +++++|++.|..++.++|.++.++--.|.
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam--~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAM--EQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHH--HhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 33444445555555555555555555555544 3556666666666 66666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT 176 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~ 176 (429)
-|+.-++.+.|+.+|++.|++--.+++...+++.|...-++........
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6666666666666666666666666666666666665555555555433
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00022 Score=69.49 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
+.+-..+-..|+--+|+.....-++..+++++ +|..+|..|+.+ ++|+.|.-++++.+-++|-++..+.++|..
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E----AW~eLaeiY~~~--~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQE----AWHELAEIYLSE--GDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHhH--hHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 33444455667777999999999999999997 999999999999 999999999999999999999999999999
Q ss_pred HHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 129 YEALN---RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 129 y~~LG---~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
++-+| ++..|..+|.++++++|.+..++..+-.+..++.+
T Consensus 198 ~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 198 LYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 99888 57789999999999999888888877777666643
No 167
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.91 E-value=6.7e-05 Score=80.56 Aligned_cols=125 Identities=12% Similarity=0.013 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
+.+.+--.|..+...|+-++|..+...+++.++.++. +|--+|..+-.- .+|++||.+|+.||.++|+|...|+
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----CwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----CWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccch----hHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3344556789999999999999999999999999995 999999999888 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
-++....++++|+.....-.+.|++.|++...|..++.....++++..+..
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777665
No 168
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00014 Score=74.98 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHH-------------------
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA------------------- 104 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eA------------------- 104 (429)
....|.-+|+.+.+.+++++|+-.|..|+.+.|..-. +|-.+-.||+.. +.+.+|
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----~Y~GL~hsYLA~--~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----IYRGLFHSYLAQ--KRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----HHHHHHHHHHhh--chHHHHHHHHHHHHHHhhcchhhhh
Confidence 3456888999999999999999999999999997764 666677777766 555554
Q ss_pred -----------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 105 -----------------IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 105 -----------------i~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
...++++|.++|.|.+|...+|..+..-|++.+++..++++|..-|+. ..+..++.+..+..
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~N 485 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQN 485 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhh
Confidence 445555566788999999999999999999999999999999988865 57788899999999
Q ss_pred hhccccccccccCCCCCCCCCcccccch
Q 014213 168 KRGLRVNDTVIELPPEYVEPPVTSIAPK 195 (429)
Q Consensus 168 e~~~a~~e~~~~L~p~~~~P~~~~~~a~ 195 (429)
+.+.++..+...|. .+|.....+.+
T Consensus 486 e~Q~am~~y~~ALr---~dP~~~~sl~G 510 (564)
T KOG1174|consen 486 EPQKAMEYYYKALR---QDPKSKRTLRG 510 (564)
T ss_pred hHHHHHHHHHHHHh---cCccchHHHHH
Confidence 98888887777775 55666544433
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=2.5e-05 Score=84.67 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
++|.++...++..++++|-....||++|.|..+++++..|..+|.+++.++|+|..+|.++..++..++++..+..
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998887776
No 170
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.87 E-value=0.00058 Score=66.66 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---A 121 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---A 121 (429)
+..|.++|...++.|+|.+|+..|+......|.++-. -.+...++.++++- ++|+.|+...++-+.+.|.++. +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~--~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKN--GEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4689999999999999999999999999999976632 45667889999998 9999999999999999998755 6
Q ss_pred HHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhccc
Q 014213 122 LLKRARCYEALNR--------LDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKRGLR 172 (429)
Q Consensus 122 l~~rA~ay~~LG~--------~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~~~a 172 (429)
+|.+|.++...=+ ..+|+..|+.++.--|++. .+...+..+...|.+...+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~ 172 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA 172 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8888988764432 4589999999999999975 4555555555666544433
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.83 E-value=3.9e-05 Score=54.58 Aligned_cols=42 Identities=29% Similarity=0.262 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666777777777777777777777777777666666554
No 172
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=9e-05 Score=74.04 Aligned_cols=124 Identities=14% Similarity=0.058 Sum_probs=78.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
.-..|+..++++.|...+..+-+.+.+ . +..+++.+|..+. -..+.+|...|+...+..+..+..+..+|.|
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~-----~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDED-S-----ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCC-H-----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-H-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344667777888887777776665432 2 3445555444432 2357788888887666666777777778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
+..+|+|++|...+..|+..+|+++.++.++..+...++....+.......|
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8888888888888888888888888777777777666666644444333334
No 173
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=3.5e-05 Score=51.33 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
++|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
No 174
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.79 E-value=6e-05 Score=84.05 Aligned_cols=129 Identities=15% Similarity=0.089 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH--------------------------------HHHHHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV--------------------------------SYLRSNMAA 91 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~--------------------------------a~l~~nrA~ 91 (429)
.|..+--.|..|..--|...|..+|++|.++++.+.+.. ..-|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 345566778888877788899999999999998765421 112344777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213 92 CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL 171 (429)
Q Consensus 92 ~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~ 171 (429)
.|+.- +++..|+.+++-|++.+|.+..+|..+|.+|-..|+|.-|++.|.+|..++|.+.-+..-.+.+...+++...
T Consensus 571 yyLea--~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEA--HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCc--cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 77776 8999999999999999999999999999999999999999999999999999998888888888888887666
Q ss_pred ccc
Q 014213 172 RVN 174 (429)
Q Consensus 172 a~~ 174 (429)
++.
T Consensus 649 ald 651 (1238)
T KOG1127|consen 649 ALD 651 (1238)
T ss_pred HHH
Confidence 655
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.79 E-value=0.00096 Score=58.83 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc------c------------HHHHHHHHHHHHHHcCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------D------------VSYLRSNMAACYMQMGLSEYPRAIH 106 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~------~------------~a~l~~nrA~~y~kl~~g~y~eAi~ 106 (429)
-..+...|......++...++..|.+|+.+...+.- . ...+...++..+... |++++|+.
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~--~~~~~a~~ 83 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEA--GDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence 345666788888999999999999999998754321 1 134566677778888 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 107 ~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
.|.+++.++|.+-.+|..+-.+|..+|++.+|+..|+++..
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.78 E-value=0.0002 Score=70.63 Aligned_cols=90 Identities=14% Similarity=-0.041 Sum_probs=76.9
Q ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213 84 YLRSNMAACY-MQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAA 156 (429)
Q Consensus 84 ~l~~nrA~~y-~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~ 156 (429)
..+++.|..+ ++. ++|++|+..|+..+...|+. +.++|.+|.+|+..|+|++|+..|++++...|++ +.++
T Consensus 143 ~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4566777776 556 89999999999999999998 5899999999999999999999999999998875 6777
Q ss_pred HHHHHHHHHHHhhcccccc
Q 014213 157 EIAERVKKELEKRGLRVND 175 (429)
Q Consensus 157 ~~La~l~~~l~e~~~a~~e 175 (429)
..++.++..+++...+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 7778888888776666653
No 177
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=97.76 E-value=0.00026 Score=56.19 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=64.7
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh---ccCCcEEEEEE
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA---EMQGSVRLFVV 338 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~---~~~~~~rl~v~ 338 (429)
++||+-|.++-|.+++|.-+-|.||..++...|+ -.+.+.|.. ..=+|.|.+++||+-|+... ..++++||.+.
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afG--q~mdl~ytn-~eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~ 77 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFG--QPMDLHYTN-NELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS 77 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeEEEec-ccEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence 4899999999999999999999999999999994 578999998 44889999999999998765 44567888765
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.00096 Score=62.85 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhCC
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG---------LSEYPRAIHECNLALEVTP 116 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~---------~g~y~eAi~~~~~ALeldP 116 (429)
..+...|..+|+.|+|..|+..|++-++..|+++ ....+++.+|.|++.+. .....+|+..|+..+..-|
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 4467889999999999999999999999999877 45677888999987761 1224589999999999999
Q ss_pred CCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHhhc
Q 014213 117 LYSKA-----------------LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA---EIAERVKKELEKRG 170 (429)
Q Consensus 117 ~~~kA-----------------l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~---~~La~l~~~l~e~~ 170 (429)
+...+ -+..|.-|...|.|..|+.-|+.++.--|+...+. ..+...+..++...
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 85432 25568889999999999999999999999987654 44445555554433
No 179
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.75 E-value=0.00017 Score=81.50 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----cH----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----DV----------SYLRSNMAACYMQMGLSEYPRAIHECNLA 111 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----~~----------a~l~~nrA~~y~kl~~g~y~eAi~~~~~A 111 (429)
.+.-.|..+++.+++.+|... .++...+.+.. .. -.+++.+|.||-+| |++++|+..|+++
T Consensus 67 ~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~--g~~~ka~~~yer~ 142 (906)
T PRK14720 67 ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL--NENKKLKGVWERL 142 (906)
T ss_pred hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 366778888888888888776 77777766551 00 14888999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 112 LeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
|+++|+++.++.++|..|... ++++|+.++.+|+..
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999875
No 180
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.75 E-value=0.00057 Score=73.47 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH 79 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~ 79 (429)
++...+-.+|..+++.|++++|...|...|..+|.+.
T Consensus 36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 5555677789999999999999999999999998876
No 181
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=9.7e-05 Score=69.83 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=78.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 90 AACYMQMGLSEYPRAIHECNLALEVTPLYS-----KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 90 A~~y~kl~~g~y~eAi~~~~~ALeldP~~~-----kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
|.-++.- |+|++|..-|..||++.|..+ -.|.++|.|+..++.++.|+.++.+|+.|+|.+..++...+.++.
T Consensus 102 GN~~F~n--gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKN--GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhc--ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 4455555 999999999999999998754 368999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccCC
Q 014213 165 ELEKRGLRVNDTVIELP 181 (429)
Q Consensus 165 ~l~e~~~a~~e~~~~L~ 181 (429)
.+.....++.++-.-|.
T Consensus 180 k~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE 196 (271)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 99888888886654443
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.00033 Score=69.28 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--
Q 014213 43 GMSQELKEEGNKLFQK-RDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-- 117 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~-gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-- 117 (429)
..|..+.+.|..|... |+++.|+..|.+|+++...+.. ....++.+.|.++.++ ++|++|+..|+++....-.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l--~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL--GRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhhccc
Confidence 4566788889988888 9999999999999998654332 3466888999999999 9999999999999875321
Q ss_pred ----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHh
Q 014213 118 ----YS-KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI--MAAEIAERVKKELEK 168 (429)
Q Consensus 118 ----~~-kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~--~a~~~La~l~~~l~e 168 (429)
.. ..+++.+.|+..+|++-.|...|++....+|... .=...+..+......
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 12 3467888999999999999999999999999543 223455666666654
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.0023 Score=62.27 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-------------C---HHHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-------------E---YPRAIHECNLA 111 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-------------~---y~eAi~~~~~A 111 (429)
....|..+|+.++|.+|+..|++.+++.|+++ ....+++.+|.|++.+..+ + ..+|+..++..
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999887 4667888899997666211 1 35788999999
Q ss_pred HHhCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhhc
Q 014213 112 LEVTPLYSK---A--------------LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM---AAEIAERVKKELEKRG 170 (429)
Q Consensus 112 LeldP~~~k---A--------------l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~---a~~~La~l~~~l~e~~ 170 (429)
++.-|+..- | -+..|.-|...|.|..|+.-++.++.--|+.+. ++..+...+..++...
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence 999997533 2 244577799999999999999999999988765 4455555555554433
No 184
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.69 E-value=9.8e-05 Score=48.73 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n 152 (429)
.+|+.+|.+|..+|++++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777764
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.68 E-value=0.00011 Score=81.92 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..|..+|-.|...+++.+|+..|+.|++.+|++.. +|..+|.+|..- |.|..|+..|++|..++|.+.-+-|..
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n----~W~gLGeAY~~s--Gry~~AlKvF~kAs~LrP~s~y~~fk~ 636 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN----LWLGLGEAYPES--GRYSHALKVFTKASLLRPLSKYGRFKE 636 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHH----HHHHHHHHHHhc--CceehHHHhhhhhHhcCcHhHHHHHHH
Confidence 44667899999999999999999999999999986 999999999999 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
|.....+|+|.+|+..+.+.+.--.....+...++.+..++.
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999999999877777777777777766653
No 186
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.68 E-value=0.00019 Score=77.43 Aligned_cols=149 Identities=18% Similarity=0.033 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
|..-++...-.++.++|+.++++||+..|..+. +|..+|..+.++ ++.+.|...|...+...|..+..|+.++.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K----l~lmlGQi~e~~--~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHK----LWLMLGQIEEQM--ENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH----HHHHHhHHHHHH--HHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 333444445556667777777777777776663 677777777777 77777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhh--hhhhccc
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVK--EKTKKKK 205 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k--~~~~~k~ 205 (429)
.-...|..-.|...++++.--+|.|...|...-+...+.+....+-...+..|. --|..+..|+.-+. .++++|-
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ---ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ---ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccchhHHHHHHhccCcccch
Confidence 777777777777777777777777766665555555555555544444445554 34556666663322 4455444
No 187
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.67 E-value=7.8e-05 Score=49.59 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY 118 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~ 118 (429)
.+|+++|.+|+.+ ++|++|+..|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQL--GDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCcCC
Confidence 4678888888888 88888888888888888863
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.64 E-value=6.3e-05 Score=50.95 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014213 108 CNLALEVTPLYSKALLKRARCYEALNRLDLAF 139 (429)
Q Consensus 108 ~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl 139 (429)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67788888888888888888888888888875
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.64 E-value=5.9e-05 Score=76.07 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
--+|.-|++. |.|++||.+|.+++.++|-++-.+.+||.+|..+.+|..|..+|..|+.|+-.-.-++...+.++..|
T Consensus 101 KE~GN~yFKQ--gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQ--GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhc--cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4578899999 99999999999999999999999999999999999999999999999999877777777777777777
Q ss_pred Hhhccccc--cccccCC
Q 014213 167 EKRGLRVN--DTVIELP 181 (429)
Q Consensus 167 ~e~~~a~~--e~~~~L~ 181 (429)
+.-..+-. +....|+
T Consensus 179 g~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALE 195 (536)
T ss_pred hhHHHHHHhHHHHHhhC
Confidence 65444444 3344454
No 190
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=7.4e-05 Score=72.13 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
..|..||..|.+||-++|..+..|.++|.||..+.+|+....++++|+.++||...+...++...........++.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999998888776666555
No 191
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.55 E-value=0.00026 Score=70.79 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHH
Q 014213 60 DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRL-DLA 138 (429)
Q Consensus 60 dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~-deA 138 (429)
.+.+|...|++.....+.++ .+++.+|.|++.+ |+|++|...+..|+..+|.++.++.++..|...+|+. +.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~----~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTP----KLLNGLAVCHLQL--GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SH----HHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 47777777777555444443 3667777777777 7777777777777777777777777777777777777 445
Q ss_pred HHHHHHHHHhCCCCHHHHHH
Q 014213 139 FRDVTTVLNKEPKNIMAAEI 158 (429)
Q Consensus 139 l~~~~kAL~l~P~n~~a~~~ 158 (429)
-+++......+|+++.....
T Consensus 256 ~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHH
Confidence 56666666677777655443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.00031 Score=64.42 Aligned_cols=88 Identities=6% Similarity=-0.109 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
.+..|.-+++. |+|++|...|+.....+|-+++.++.+|-|+..+++|+.|+..|-.|..++++++......+.++-.
T Consensus 40 iY~~Ay~~y~~--Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQ--GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 34567777888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccc
Q 014213 166 LEKRGLRVND 175 (429)
Q Consensus 166 l~e~~~a~~e 175 (429)
+++...|..-
T Consensus 118 l~~~~~A~~~ 127 (165)
T PRK15331 118 MRKAAKARQC 127 (165)
T ss_pred hCCHHHHHHH
Confidence 9988777663
No 193
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.53 E-value=0.00051 Score=51.44 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR 169 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~ 169 (429)
..+|.+|.+++.+|+|+.|+.+++.+|+++|+|..+......+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999999999999999999988877553
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.52 E-value=0.00024 Score=50.46 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
++..+|.+|..+ |++++|+..|+++++.+|+++.+++.+|.
T Consensus 3 ~~~~la~~~~~~--G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRL--GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 678899999999 99999999999999999999999998875
No 195
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00081 Score=68.35 Aligned_cols=113 Identities=21% Similarity=0.201 Sum_probs=80.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc---H-------------------------------------------HH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHID---V-------------------------------------------SY 84 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~---~-------------------------------------------a~ 84 (429)
.|.-+|..|+|++|+..|.-+...+..+.+. + .+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 4778899999999999999888754333320 0 11
Q ss_pred HH-----------HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 85 LR-----------SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 85 l~-----------~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
++ +.-+.-||++ +|++||+.|.+.|.-+|.+...-..+|.||+.+.-|+-+-+.+.-.|..-|+.+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~---HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRM---HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHH---HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 11 1122335554 778888888888888888777777788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 014213 154 MAAEIAERVKKEL 166 (429)
Q Consensus 154 ~a~~~La~l~~~l 166 (429)
.+....+-...++
T Consensus 220 iA~NLkacn~fRl 232 (557)
T KOG3785|consen 220 IAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHhhh
Confidence 8777777655555
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.51 E-value=0.00054 Score=60.92 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 014213 87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI----MAAEIAERV 162 (429)
Q Consensus 87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~----~a~~~La~l 162 (429)
-.-|.+...- |+.+.|++-|.++|.+.|..+.+|.+||++|...|+.++|+.++++|+++..+.. .++...+.+
T Consensus 47 El~~valaE~--g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 47 ELKAIALAEA--GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHhc--cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3345566666 9999999999999999999999999999999999999999999999999965432 355566677
Q ss_pred HHHHHhhccccc
Q 014213 163 KKELEKRGLRVN 174 (429)
Q Consensus 163 ~~~l~e~~~a~~ 174 (429)
+..++....+..
T Consensus 125 yRl~g~dd~AR~ 136 (175)
T KOG4555|consen 125 YRLLGNDDAARA 136 (175)
T ss_pred HHHhCchHHHHH
Confidence 777765444433
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.48 E-value=0.0049 Score=53.07 Aligned_cols=117 Identities=26% Similarity=0.250 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHhCC---CCHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA-CYMQMGLSEYPRAIHECNLALEVTP---LYSK 120 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~-~y~kl~~g~y~eAi~~~~~ALeldP---~~~k 120 (429)
...+...|..+...+++..|+..+..++...+.+.. .....+. +|..+ +++..|+..+.+++..+| ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----AEALLALGALYEL--GDYEEALELYEKALELDPELNELAE 168 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCccchHH
Confidence 344666777777777777888888887777666532 3333444 67777 788888888888877666 3566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMAAEIAERVKKELE 167 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a~~~La~l~~~l~ 167 (429)
.++.++..+...++++.|+..+.+++...|. ...+...+..++...+
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 6666677777777888888888888888777 5666666666666555
No 198
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=97.45 E-value=0.0014 Score=52.85 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=55.4
Q ss_pred EEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCC--CEEEecChHHHHHHHHhhccCCcEEEEEEe
Q 014213 273 RVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEG--DLVTITTDEELRWAEASAEMQGSVRLFVVG 339 (429)
Q Consensus 273 R~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~Dedg--Dliti~~~~dl~~a~~~~~~~~~~rl~v~e 339 (429)
.-+.+|...+|.+|++.|.+||+.. ...++-|+++++ .||.|+-+++++-|-+.+. .|.+.||+++
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~-~~~ltLwcq~ 77 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDVA-DGPRGLQLQC 77 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhcc-CCceEEEEec
Confidence 3455899999999999999999644 448999998877 5888888999999999854 7889999975
No 199
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.43 E-value=0.0011 Score=71.61 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=90.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCccH-----------------------------HHHHHHHHHHHHHcCCCCHH
Q 014213 52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDV-----------------------------SYLRSNMAACYMQMGLSEYP 102 (429)
Q Consensus 52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~-----------------------------a~l~~nrA~~y~kl~~g~y~ 102 (429)
+..++..||...|...+..|++.+|++.+-+ ..+|..-+...--+ ++.+
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l--d~~e 668 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL--DNVE 668 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh--hhHH
Confidence 4466677777777777777777777654310 12344444444445 8899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
+|+..|+++|+.-|++.+.|+.+|+++..+++.+.|...|...++.-|+....|..++.+....+.
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998877754
No 200
>PRK10941 hypothetical protein; Provisional
Probab=97.43 E-value=0.0015 Score=64.65 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
+...+.|+-.+|++. ++|+.|+.++++.+.++|+++.-+.-||.+|.++|.+..|+.+++..+...|+++.+......
T Consensus 180 l~Rml~nLK~~~~~~--~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 180 IRKLLDTLKAALMEE--KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 456788999999999 999999999999999999999999999999999999999999999999999999987766665
Q ss_pred HHH
Q 014213 162 VKK 164 (429)
Q Consensus 162 l~~ 164 (429)
+..
T Consensus 258 l~~ 260 (269)
T PRK10941 258 IHS 260 (269)
T ss_pred HHH
Confidence 543
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.00046 Score=71.22 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHH--H
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----TPLYSK--A 121 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----dP~~~k--A 121 (429)
+.||.||-.|+|++|+..-+.-|++...... ..-.+|+|+|.||.-+ |+|+.|++.|.+++.+ .-.-.. .
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl--g~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL--GNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh--cccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 5689999999999999998888887654332 1235889999999999 9999999999876543 333333 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHhhccccc
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEP------KNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P------~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
-|.+|..|.-+.++..|+.++.+-|.+.- ....+.+.++..+.++++...++.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 57788888888888888888888776632 234566667777777766555543
No 202
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.34 E-value=0.00053 Score=45.13 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY 118 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~ 118 (429)
+++.+|.+|+.+ |+|++|+..|+++++++|++
T Consensus 3 ~~~~lg~~~~~~--~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQL--GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCcCC
Confidence 556666666666 66666666666666666653
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.0049 Score=57.96 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLL-PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKA 121 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~-P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kA 121 (429)
.+.....|+.+...|+|.+|...|++++.-. ..++ .++..++.+.+.+ +++..|...++...+.+|.. +..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~--~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAI--QEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhh--ccHHHHHHHHHHHhhcCCccCCCCc
Confidence 3445678999999999999999999998743 2333 4778899999999 99999999999999999874 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
.+.+|.+|..+|++..|...|+-+++..|+- .+..........++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg 207 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG 207 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence 8888999999999999999999999998864 44444444444444
No 204
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.0009 Score=66.18 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=95.2
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PL 117 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~ 117 (429)
...+..+...|+.|-..++|.+|..+|.+|.++.-. +....+..|.+.+.||.+ .++.+|+..+++|+++- -.
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~---~~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK---GDPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHhcC
Confidence 356677888899999999999999999999887643 333456788888888877 49999999999999873 11
Q ss_pred ----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHHhhccccc
Q 014213 118 ----YSKALLKRARCYEAL-NRLDLAFRDVTTVLNKEP--KN----IMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 118 ----~~kAl~~rA~ay~~L-G~~deAl~~~~kAL~l~P--~n----~~a~~~La~l~~~l~e~~~a~~ 174 (429)
-.+++.++|.+|... |+++.|+..|++|+.+-- +. ..++..++.++..+++...++.
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 256799999999998 999999999999998722 11 2344555566666665555544
No 205
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.30 E-value=0.00048 Score=65.99 Aligned_cols=107 Identities=14% Similarity=0.059 Sum_probs=86.7
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 68 YEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 68 Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
..+.|....-..+.++.+++-||..|-.+ |-+.-|.-+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|+-+++
T Consensus 50 lsqlL~~~~l~~eeRA~l~fERGvlYDSl--GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 50 MSQILASRALTDEERAQLLFERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHhccCChHHHHHHHHHhcchhhhh--hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 34444433334446788999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213 148 KEPKNIMAAEIAERVKKELEKRGLRVNDT 176 (429)
Q Consensus 148 l~P~n~~a~~~La~l~~~l~e~~~a~~e~ 176 (429)
++|...-+..+.+....--++...+..+.
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 99998877776665444444555555543
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.24 E-value=0.00025 Score=48.04 Aligned_cols=34 Identities=35% Similarity=0.557 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHH
Q 014213 67 KYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106 (429)
Q Consensus 67 ~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~ 106 (429)
+|++||+++|+++. +|+|+|.+|... |++++|++
T Consensus 1 ~y~kAie~~P~n~~----a~~nla~~~~~~--g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE----AYNNLANLYLNQ--GDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH----HHHHHHHHHHHC--cCHHhhcC
Confidence 48999999999996 999999999999 99999873
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.21 E-value=0.0096 Score=51.24 Aligned_cols=108 Identities=25% Similarity=0.262 Sum_probs=88.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 014213 54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-YSKALLKRARCYEAL 132 (429)
Q Consensus 54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-~~kAl~~rA~ay~~L 132 (429)
.++..|+++.|+..|.+++...|... .....+..++..+... +++..|+..+.+++...+. ...++..++.++...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELN-ELAEALLALGALLEAL--GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcc-chHHHHHHhhhHHHHh--cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 88999999999999999998777301 1123555566667777 8999999999999999999 799999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 133 G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
+.++.|+..+..++...|........+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 99999999999999999986666666666555
No 208
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.16 E-value=0.00071 Score=44.71 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n 152 (429)
++|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467777777777777777777777777777743
No 209
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.002 Score=65.59 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=82.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213 53 NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL 132 (429)
Q Consensus 53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L 132 (429)
..+..++||..|+..++-.+.++.... ..+-.-+|.||+.+ |+|++|+..|+.+.+-+-.+.+.+.++|.|+.-+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE---~~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEE---DSLQLWIAHCYFHL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhh---HHHHHHHHHHHHhh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 356678999999999998886654333 13444569999999 9999999999999998877899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 133 G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
|.|.+|.....+| |.++-....+-.+-..++
T Consensus 105 g~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 105 GQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 9999998766554 556655555555444443
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.0025 Score=65.91 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CCH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLP--RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP------LYS 119 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P--~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP------~~~ 119 (429)
+-+.||.+.-.|+|+.|++.|..++.+.- .+...-+...+.+|..|.-+ .+|+.||.+..+-|.+.. --.
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll--~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL--KEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45789999999999999999998877653 22222344556699999999 999999999998776542 357
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHHHhhccccc
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNK-----EPK-NIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l-----~P~-n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
++++.+|.+|-.+|..+.|+.+.+..+.+ +|. ...++.++..+...++.....+.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~ 376 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVD 376 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCC
Confidence 89999999999999999999999988876 333 44577788888887877665554
No 211
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.09 E-value=0.014 Score=60.59 Aligned_cols=98 Identities=18% Similarity=0.389 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------C--ccH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRN--------H--IDV----SYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--------~--~~~----a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
...|..+|++++|..|+..|..||++.... + .++ +.+-..+..||++| ++.+-|+....+.|-+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~--rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRM--RKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhc--CCCchHHHHHhhhhhc
Confidence 346667777777877777777777776431 1 122 34567789999999 9999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 115 TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 115 dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
+|.+..-+++.|.|+..|.+|.+|-+.+.-|.-+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887665543
No 212
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.04 E-value=0.011 Score=63.68 Aligned_cols=98 Identities=16% Similarity=0.011 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..+.-.+.-|-..|+|++|+.+.++||+..|...+ +|...|.+|-.+ |++.+|...++.|-.+|+.+--.-..-
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e----ly~~KarilKh~--G~~~~Aa~~~~~Ar~LD~~DRyiNsK~ 268 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE----LYMTKARILKHA--GDLKEAAEAMDEARELDLADRYINSKC 268 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 45667788888889999999999999999998876 888899999998 999999999999999998877777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKE 149 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~ 149 (429)
+..+...|+.++|...+.....-+
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCC
Confidence 888888899999988887766544
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.02 E-value=0.0045 Score=55.62 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE---------------YPRAIHECNLAL 112 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~---------------y~eAi~~~~~AL 112 (429)
...+|..||+.++|++|+..|++-|++.|.++ ....+++.+|.+++.+ .. ...|+.+|...+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~~~--~~~~~~~~~~~drD~~~~~~A~~~f~~lv 126 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYYEQ--DEGSLQSFFRSDRDPTPARQAFRDFEQLV 126 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHHHH--hhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999877 4667888899999998 55 889999999999
Q ss_pred HhCCCCHHH
Q 014213 113 EVTPLYSKA 121 (429)
Q Consensus 113 eldP~~~kA 121 (429)
..-|+..-|
T Consensus 127 ~~yP~S~ya 135 (142)
T PF13512_consen 127 RRYPNSEYA 135 (142)
T ss_pred HHCcCChhH
Confidence 999987543
No 214
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0042 Score=66.61 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH-----------------------------HHHHHHHHHHHHHc
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV-----------------------------SYLRSNMAACYMQM 96 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~-----------------------------a~l~~nrA~~y~kl 96 (429)
..++..-|.+.+.++|++|+....+.|...|++...+ .+..+-.|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3466667777788888888888888888777654321 12335678888888
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 97 GLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 97 ~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
+..++|+..++ .+++...+++..+|++++.+|+|++|+..|+..++-+-++.+
T Consensus 93 --nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 93 --NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred --ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 88888888887 567777788888888888999999999888888876555443
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.98 E-value=0.0053 Score=65.35 Aligned_cols=98 Identities=21% Similarity=0.112 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH--HH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL--KR 125 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~--~r 125 (429)
+..+|..+...|+.++|+..|++|+.....-..-...+++.++.||+-+ .+|++|...+.+.++.+ +|.+++| -.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~--~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ--HDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH--chHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5677888888999999999999888533322222245788899999988 89999998888888744 5667654 44
Q ss_pred HHHHHHcCCH-------HHHHHHHHHHHHh
Q 014213 126 ARCYEALNRL-------DLAFRDVTTVLNK 148 (429)
Q Consensus 126 A~ay~~LG~~-------deAl~~~~kAL~l 148 (429)
|.||..+++. ++|...|.++-.+
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 7888888888 5555555554443
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.017 Score=57.68 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH----------------
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL---------------- 110 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~---------------- 110 (429)
....++..++..|++.+|...|..++...|.+.. +...++.||..+ |+++.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~----~~~~la~~~l~~--g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSE----AKLLLAECLLAA--GDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccch----HHHHHHHHHHHc--CChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3566788999999999999999999999999975 777899999999 888766554443
Q ss_pred ------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Q 014213 111 ------------------ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP--KNIMAAEIAERVKKELE 167 (429)
Q Consensus 111 ------------------ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P--~n~~a~~~La~l~~~l~ 167 (429)
.+..+|++..+-+.+|..|...|++++|++.+-..+..+- .+..++..+-.+...++
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 1234789999999999999999999999999888887754 34567777777666654
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.75 E-value=0.039 Score=56.85 Aligned_cols=123 Identities=17% Similarity=0.016 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-YSKA 121 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-~~kA 121 (429)
.+|...-++|..-+..|+|..|.....++-+..+.. ...|.--|.+--++ |+++.|-.+..+|-+..++ ....
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p----~l~~l~aA~AA~qr--gd~~~an~yL~eaae~~~~~~l~v 155 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP----VLAYLLAAEAAQQR--GDEDRANRYLAEAAELAGDDTLAV 155 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch----HHHHHHHHHHHHhc--ccHHHHHHHHHHHhccCCCchHHH
Confidence 567778889999999999999999988866554432 24555555566667 9999999999999999544 4677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL 171 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~ 171 (429)
+..++..+...|+++.|...+..++.+.|.++.++....+++-.++....
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 89999999999999999999999999999999999999999988876543
No 218
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0082 Score=60.67 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=87.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 014213 57 QKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL----YSKALLKRARCYE 130 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~----~~kAl~~rA~ay~ 130 (429)
..|++..-...+ ++|..+|. .+...|--|---|.-|++- .+|..|+..|+.+|..... +.-.|.+||-|..
T Consensus 54 ~~gd~~~~~~~L-qslK~da~E~ep~E~Aen~KeeGN~~fK~--Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~ 130 (390)
T KOG0551|consen 54 SEGDPNPDNVCL-QSLKADAEEGEPHEQAENYKEEGNEYFKE--KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL 130 (390)
T ss_pred CCCCCCccHHHH-HHhhhccccCChHHHHHHHHHHhHHHHHh--hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH
Confidence 345554444433 44555543 2324566677789999998 9999999999999988644 3557999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccc
Q 014213 131 ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLR 172 (429)
Q Consensus 131 ~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a 172 (429)
.+|+|..|+.++.+|+.++|.+.-++..-+.+.-.|..-..+
T Consensus 131 ~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 131 YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEA 172 (390)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999998888888887777664433
No 219
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.74 E-value=0.0029 Score=67.75 Aligned_cols=110 Identities=17% Similarity=0.090 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
+.|.-.-..|+...|+.++..|+.+.|.... .-..|+|...++- +-.-.|-..+.++|.++...+-.+|-+|.+|
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~--~~~~da~~~l~q~l~~~~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHY--GLHLDATKLLLQALAINSSEPLTFLSLGNAY 686 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHh--hhhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence 3344444689999999999999999997553 4568899999888 8889999999999999988888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
..+.+.+.|++.|+.|+.++|+++...+.+..+..
T Consensus 687 l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999888877655
No 220
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.72 E-value=0.032 Score=63.24 Aligned_cols=124 Identities=15% Similarity=0.018 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------CHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL------YSK 120 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~------~~k 120 (429)
....|..++..|+|++|...+.+++...+.... ....+++++|.++..+ |++++|+..+.+++.+... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~--G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK--GELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 445788899999999999999999997665432 1345678899999988 9999999999999976432 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHhhcccc
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPK--------NIMAAEIAERVKKELEKRGLRV 173 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~--------n~~a~~~La~l~~~l~e~~~a~ 173 (429)
++..+|.++...|++++|...+++++.+... .......++.+....++...+.
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6788899999999999999999999986221 1223344555555555554443
No 221
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.69 E-value=0.025 Score=64.04 Aligned_cols=125 Identities=11% Similarity=0.003 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL------ 117 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~------ 117 (429)
..+...|..++..|++++|...|.+++........ ....++.++|.+++.. |++++|...+.+++.+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~--G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ--GFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhccccc
Confidence 34567888899999999999999999987654322 2345678899999998 9999999999999986321
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhhccc
Q 014213 118 --YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK-----NIMAAEIAERVKKELEKRGLR 172 (429)
Q Consensus 118 --~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~-----n~~a~~~La~l~~~l~e~~~a 172 (429)
....+..+|.++...|++++|...+.+++.+... ...++..++.+....++...+
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 2334667899999999999999999999886332 123344455555555544433
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.013 Score=57.69 Aligned_cols=87 Identities=15% Similarity=-0.004 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 014213 86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEIA 159 (429)
Q Consensus 86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~L 159 (429)
.++.|.-+++. |+|..|...|..-+..-|+. +.|+|-+|.+++.+|+|++|...|..+++-.|.+ ++++.-+
T Consensus 144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 67889999999 99999999999999998875 6799999999999999999999999999998865 5778888
Q ss_pred HHHHHHHHhhccccc
Q 014213 160 ERVKKELEKRGLRVN 174 (429)
Q Consensus 160 a~l~~~l~e~~~a~~ 174 (429)
+.+...+++...|-.
T Consensus 222 g~~~~~l~~~d~A~a 236 (262)
T COG1729 222 GVSLGRLGNTDEACA 236 (262)
T ss_pred HHHHHHhcCHHHHHH
Confidence 888888877666544
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.63 E-value=0.0051 Score=62.85 Aligned_cols=131 Identities=16% Similarity=0.110 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-------
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY------- 118 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~------- 118 (429)
+...|+.+...+.|+.+++.|+.|+++.-++... --.++..++..|.++ .+|++|+-...+|+++.-.+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l--~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL--KDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH--HhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 4458999999999999999999999987654431 134678899999999 99999999999999875321
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHHhhccccccccccC
Q 014213 119 ---SKALLKRARCYEALNRLDLAFRDVTTVLNKE--PKN----IMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 119 ---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~--P~n----~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
.-++|+++.+|..+|++..|.+++++|.++. -.| .....-++.++...++...++..+....
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2368999999999999999999999998763 233 3455667778877777666666554443
No 224
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.03 Score=60.21 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------CccHHHHHHHHHHHHHHcCCC
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRN---------------------------HIDVSYLRSNMAACYMQMGLS 99 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~---------------------------~~~~a~l~~nrA~~y~kl~~g 99 (429)
.+-.+|..+|+.++|++|+..|+..++-+..+ +++....++|.|-.+... |
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~--g 189 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN--G 189 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc--c
Confidence 35568999999999999999999986654322 222245778898888888 9
Q ss_pred CHHHHHHHHHHHHHhC-------CCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 100 EYPRAIHECNLALEVT-------PLY---S-----KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155 (429)
Q Consensus 100 ~y~eAi~~~~~ALeld-------P~~---~-----kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a 155 (429)
+|.+|++.+..|+.+. -.+ + .....++.+|..+|+..+|...|...++.+|.+...
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 9999999999995442 111 1 245677899999999999999999999988766543
No 225
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.60 E-value=0.0039 Score=41.07 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL 117 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~ 117 (429)
+|..+|.+|..+ |++++|+..++++++++|+
T Consensus 3 ~~~~lg~~y~~~--~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQL--GDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHT--TSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Confidence 566667777776 7777777777777776664
No 226
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=96.57 E-value=0.0027 Score=62.13 Aligned_cols=81 Identities=28% Similarity=0.379 Sum_probs=69.4
Q ss_pred CCCceeEEEEeCCceEEEEccCC--ccHHHHHHHHHhhCCC-CCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEE
Q 014213 258 NEPKKTVKLVFGEDIRVAQLPLN--SSLLQLREVISDRFPS-CRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVR 334 (429)
Q Consensus 258 ~~~~~~vK~~~~~DiR~~~i~~~--~~~~~L~~~v~~kf~~-~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~r 334 (429)
..-++.||--|+.+-|+|.+|.+ .+|.+|...|+..--. .-.|+|-|-|.-|||..|+.||-|.-|++++++ -+|
T Consensus 15 ~~~~veVKSKFdaEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~P--lLR 92 (358)
T KOG3606|consen 15 DSSTVEVKSKFDAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGDLLPINNDDNLHKALSSARP--LLR 92 (358)
T ss_pred CcceEEeeccccchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCceecccCchhHHHHhhccCc--hhh
Confidence 35588899999999999999887 5899998888877632 345999999999999999999999999998764 589
Q ss_pred EEEEee
Q 014213 335 LFVVGV 340 (429)
Q Consensus 335 l~v~e~ 340 (429)
|+|+.-
T Consensus 93 ~~iQkr 98 (358)
T KOG3606|consen 93 LLIQKR 98 (358)
T ss_pred hhhhhh
Confidence 998854
No 227
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.55 E-value=0.016 Score=51.68 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 85 LRSNMAACYMQMG-LSEYPRAIHECNLALE-VTPL-YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 85 l~~nrA~~y~kl~-~g~y~eAi~~~~~ALe-ldP~-~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
..+|+|.|+.+.. ..+..+.|..++..+. -.|. ....+|.+|..++.+++|+.|+.+++..|..+|+|.++...-..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 5577888877651 1246678888888886 4554 35678999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 014213 162 VKKELEKRG 170 (429)
Q Consensus 162 l~~~l~e~~ 170 (429)
++..+...+
T Consensus 114 ied~itkeg 122 (149)
T KOG3364|consen 114 IEDKITKEG 122 (149)
T ss_pred HHHHHhhcc
Confidence 999886544
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.54 E-value=0.018 Score=54.34 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE-VTPLYSKALLKRARCY 129 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-ldP~~~kAl~~rA~ay 129 (429)
.+..+-+.=|.+.++....+.+...|... -++.+|.+...+ |+|.+|...|.+++. +-..+...++.+|.+.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-----nr~rLa~al~el--Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq 134 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQ-----NRYRLANALAEL--GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ 134 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHH-----HHHHHHHHHHHh--hhhhhhHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 34455566778888888888888888765 456789999999 999999999999986 6678899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213 130 EALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKRGLRVNDTVIELP 181 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~~~a~~e~~~~L~ 181 (429)
..++++.+|...+++..+.+|. .+.....+++++..++..+.+-......++
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999999985 567788889999988877766554444443
No 229
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.53 E-value=0.0045 Score=40.22 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n 152 (429)
.|+|++|.||..+|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888864
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0074 Score=58.89 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEV-----------TPL-------YSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----------dP~-------~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
.++...|.-++++ |+|.+|...|..|+.. +|. ....|++.++|+...|+|-++++.+...
T Consensus 179 ~~l~q~GN~lfk~--~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 179 PVLHQEGNRLFKL--GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred HHHHHhhhhhhhh--ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4566788899999 9999999999998743 222 3347899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 146 LNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
|..+|.|.-|+...+.+..+.=..+.|..+....|
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 99999999999888888776655555555444444
No 231
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.42 E-value=0.0017 Score=68.16 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
-+-+.-++.- .+|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|...-++...+.+..++
T Consensus 8 k~ean~~l~~--~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 8 KNEANEALKD--KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhHHhhhccc--chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 3455666666 89999999999999999999999999999999999999999999999999999888888887888888
Q ss_pred Hhhccccc
Q 014213 167 EKRGLRVN 174 (429)
Q Consensus 167 ~e~~~a~~ 174 (429)
++...+..
T Consensus 86 ~~~~~A~~ 93 (476)
T KOG0376|consen 86 GEFKKALL 93 (476)
T ss_pred HHHHHHHH
Confidence 77666655
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.034 Score=54.94 Aligned_cols=116 Identities=19% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HhCC--CCHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL----EVTP--LYSKALL 123 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL----eldP--~~~kAl~ 123 (429)
-..+.+...+.|.-.+..|.+.++.+|...+ .+.+.++...|+. |+.+.|-..++++- .++- ...-.+.
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p---~L~s~Lgr~~MQ~--GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEP---QLLSGLGRISMQI--GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccH---HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3444555555555555555555555533322 2444444444544 55555555444221 1221 1122333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
+.+.+|...++|.+|...|.+++..+|.++.+....+-|..-+++..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 33444444444445555555555555544444444444444444333
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.085 Score=52.12 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=67.6
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k 120 (429)
+.+.|+.|...+. ..+.+.+|.-.|++--+..|..+. +.+..|.|++.+ ++|++|......||.-++.++.
T Consensus 172 LtQLA~awv~la~---ggek~qdAfyifeE~s~k~~~T~~----llnG~Av~~l~~--~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 172 LTQLAQAWVKLAT---GGEKIQDAFYIFEELSEKTPPTPL----LLNGQAVCHLQL--GRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHHHHHHhc---cchhhhhHHHHHHHHhcccCCChH----HHccHHHHHHHh--cCHHHHHHHHHHHHhccCCCHH
Confidence 3455555554433 344567777777776664444442 667777777777 7777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHH
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTT-VLNKEPKNIM 154 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~k-AL~l~P~n~~ 154 (429)
++.++-.+-..+|.-.++...+-. ....+|.++-
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 777777777777766655544433 3344565553
No 234
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.32 E-value=0.059 Score=55.56 Aligned_cols=115 Identities=15% Similarity=0.022 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
..+..+.+.|++++|.....++++..-+.. +...+-+++++++..=+...++.+...|+++..++.+|..|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR---------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChh---------HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 456677889999999999999998755322 44555666779999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
...+.|.+|-.+|+.|++.-|+ ...+..++.+...+++...+..
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999875 5677888888888887655544
No 235
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.30 E-value=0.0062 Score=37.32 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
+|+++|.+|..+++++.|+..|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555543
No 236
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.27 E-value=0.031 Score=45.31 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
.+....++|..+|...+.++|+..+.+||+..++.+ ++..++-.+..+|+.+ |+|.+++....+=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~--Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEW--GKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999998744 6888888899999999 9999999887665554
No 237
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.016 Score=61.21 Aligned_cols=123 Identities=15% Similarity=0.052 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCCc--c--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-h-----
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKA-LKLLPRNHI--D--VSYLRSNMAACYMQMGLSEYPRAIHECNLALE-V----- 114 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kA-Lel~P~~~~--~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-l----- 114 (429)
..+..+.+.+|-.|+|..|+..+... |...|.... . .-.+|+|+|-.++++ +.|.-++-.|.+||+ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~--~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL--GCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh--hhHHHHHHHHHHHHHHHHHHHh
Confidence 34567788889999999999876543 333443111 1 123568999999999 999999999999996 1
Q ss_pred ---CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 115 ---TP---------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 115 ---dP---------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
.| .....+|+.|..|...|+.-+|.++|.+++..--.|+..|..++++...-.+..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~ 386 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKG 386 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh
Confidence 12 345679999999999999999999999999999999999999999886554443
No 238
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.24 E-value=0.023 Score=52.98 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNR----------LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 100 ~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~----------~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
-|+.|...++.+...+|.+..++++=|.++..|.+ +++|+.-|++||.++|+...++..++.++..++.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999998855 4678888999999999999999999999988864
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.04 Score=54.46 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKA----LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kA----Lel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
.-....|...++-||-+.|-.+|+.. -.++.... -..++-|.+..|+-. ++|..|...+++.++.||.++.+
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~--~~~V~~n~a~i~lg~--nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG--KIMVLMNSAFLHLGQ--NNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch--hHHHHhhhhhheecc--cchHHHHHHHhhccccCCCchhh
Confidence 34557899999999999999999843 33333222 135677788888776 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
..+.|.|+..+|+..+|++..+.++...|....
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 999999999999999999999999999997543
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.1 Score=49.31 Aligned_cols=102 Identities=11% Similarity=0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK-ALLK 124 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k-Al~~ 124 (429)
......+-.++..+++++|+..++.++.. |.+...-+.+-.++|.+.+++ +.+++|+..++.. .++.|.. .--.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~--~k~D~AL~~L~t~--~~~~w~~~~~el 164 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQ--KKADAALKTLDTI--KEESWAAIVAEL 164 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhcc--ccccHHHHHHHH
Confidence 34567788999999999999999999975 444444456778889999999 9999999877543 2233322 3567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n 152 (429)
+|.+|...|+-++|...|.+++..+++.
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7999999999999999999999998543
No 241
>PRK10941 hypothetical protein; Provisional
Probab=96.18 E-value=0.043 Score=54.42 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
-+.+.-..|.+.++|+.|+.+.+..+.+.|.++. -+.-||.+|.++ +.+..|+.+++..++..|+.+.+..-+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~----e~RDRGll~~qL--~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY----EIRDRGLIYAQL--DCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3556677899999999999999999999999984 778899999999 9999999999999999999998877665
Q ss_pred HHHH
Q 014213 127 RCYE 130 (429)
Q Consensus 127 ~ay~ 130 (429)
++..
T Consensus 257 ql~~ 260 (269)
T PRK10941 257 QIHS 260 (269)
T ss_pred HHHH
Confidence 5543
No 242
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.17 E-value=0.04 Score=61.13 Aligned_cols=115 Identities=6% Similarity=-0.087 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+...-..+...|++++|...|+...+..+-.+. ...|..+..+|.+. |++++|...+++. ...| +...|..+..
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~--G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~ 502 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGRE--GLLDEAYAMIRRA-PFKP-TVNMWAALLT 502 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhc--CCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence 666677788888899999988888764322221 12566677888888 8888888877653 2334 3556888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
++...|+++.|...+++++.++|++...+..+..++...++
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 88888888888888888888888877766666666655543
No 243
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.042 Score=59.71 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
.|++.+..+|+..+|..+++.|...+...|.+.. +.+.+..+++.||+.+ .+.++|.+.+.+|=+.+|..+-.-+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L--~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL--EQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3678899999999999999999999999997655 3577889999999999 99999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
.-.+...-|.-++|+....+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888999999999999998877655
No 244
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.06 Score=54.08 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213 54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN 133 (429)
Q Consensus 54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG 133 (429)
.+.+..+|++|+.+...-.+..|.+.. .++.+|.||+.. .+|..|..+|++.-.+.|...+.-+.-|+.++..+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rA----gLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRA----GLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999998774 788999999999 99999999999999999999998888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 134 RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 134 ~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
.+..|+...... -++...+...-.+..++
T Consensus 93 i~ADALrV~~~~----~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 93 IYADALRVAFLL----LDNPALHSRVLQLQAAI 121 (459)
T ss_pred ccHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 999998765433 33444444444444444
No 245
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.97 E-value=0.029 Score=42.00 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
+++.+|..++++ |+|.+|+..++.+|+++|++..|......+
T Consensus 3 ~lY~lAig~ykl--~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKL--GEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHh--hhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 567799999999 999999999999999999998876555443
No 246
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.89 E-value=0.075 Score=53.56 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
.+.|......+......|+.+.|...|..|+.++|.++. ++..+|...-.- .+.-+|-.+|.+||.++|.+.+|
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~----~L~e~G~f~E~~--~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ----ILIEMGQFREMH--NEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH----HHHHHhHHHHhh--hhhHhhhhhhheeeeeCCCchHH
Confidence 355555566777788899999999999999999999985 777777765544 77888999999999999999999
Q ss_pred HHHHHHHH---HHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 014213 122 LLKRARCY---EAL-NRLDLAFRDVTTVLNKEPK-NIMAAEIAERVK 163 (429)
Q Consensus 122 l~~rA~ay---~~L-G~~deAl~~~~kAL~l~P~-n~~a~~~La~l~ 163 (429)
+.+|+... ..+ .++=..+......+..-|. |...+....+.+
T Consensus 187 LvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtY 233 (472)
T KOG3824|consen 187 LVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETY 233 (472)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 99987533 222 2344455555555544443 344444444433
No 247
>PLN03077 Protein ECB2; Provisional
Probab=95.85 E-value=0.12 Score=58.73 Aligned_cols=108 Identities=8% Similarity=-0.031 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCCCHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKL--LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV---TPLYSK 120 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel--~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel---dP~~~k 120 (429)
..|......|.+.|+.++|+..|++.++. .|+.. .|..+-.++.+. |.+++|+..++...+. .| +..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-----T~~~ll~a~~~~--g~v~ea~~~f~~M~~~~gi~P-~~~ 626 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-----TFISLLCACSRS--GMVTQGLEYFHSMEEKYSITP-NLK 626 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHhhc--ChHHHHHHHHHHHHHHhCCCC-chH
Confidence 45888899999999999999999998874 45443 445555567777 9999999999998843 34 457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~ 163 (429)
.|..+..+|...|++++|.+.+++. .+.|+ ..+|..+-..+
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence 8899999999999999999999875 35665 45555555544
No 248
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.84 E-value=0.03 Score=46.36 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhhc
Q 014213 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERVKKELEKRG 170 (429)
Q Consensus 104 Ai~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n--~~a~~~La~l~~~l~e~~ 170 (429)
.+..++.+++.+|++..+.|.+|.++...|++++|++.+-.++..+|+. ..++..+-.+...++...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3567778888888888888888888888888888888888888887754 667777777777776533
No 249
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.83 E-value=0.076 Score=45.77 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG---------LSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~---------~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
.+..+|.+|+|-.|++..+..+...+++.. .+.++.-.|..++++. .--.-.++..+.++..+.|.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 567899999999999999999999887663 2245666666665541 012445888889999999998888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
+|.+|.-+...-.|++++.-.+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888877777888888888888876
No 250
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.83 E-value=0.014 Score=35.66 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL 117 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~ 117 (429)
++.++|.+|+.+ ++++.|+..+++++.++|.
T Consensus 3 ~~~~~a~~~~~~--~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKL--GDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHccCCC
Confidence 567788888888 8888888888888887775
No 251
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.82 E-value=0.029 Score=56.44 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
.+.|.-..+. |+.++|...|+.|+.++|+++.++...|...+.-.+.-+|-++|-+||.++|.|..++.+.++....
T Consensus 120 l~~A~~~~~~--Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~pl 196 (472)
T KOG3824|consen 120 LKAAGRSRKD--GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPL 196 (472)
T ss_pred HHHHHHHHhc--cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchH
Confidence 3444444455 9999999999999999999999999999999999999999999999999999999999888874433
No 252
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.80 E-value=0.22 Score=58.34 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCCCHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE----VTPLYSKA 121 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe----ldP~~~kA 121 (429)
|...-..|.+.|++++|+..|....... |+. ..|+.+..+|.+. |++++|...+.+... +.|+ ...
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-----vTYnsLI~a~~k~--G~~deA~~lf~eM~~~~~gi~PD-~vT 581 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-----VVFNALISACGQS--GAVDRAFDVLAEMKAETHPIDPD-HIT 581 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhcCCCCCc-HHH
Confidence 3344445555666666666665554432 221 2444455555555 555555555555543 2232 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 122 LLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 122 l~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
|..+-.+|...|++++|++.|+.....
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 444445555555555555555555544
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.80 E-value=0.017 Score=39.19 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
+|.++|.+|..+|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566666666666666666666664443
No 254
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.026 Score=56.61 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----CC---
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT----PL--- 117 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld----P~--- 117 (429)
|..+++.|-.+|+.|+|+.|+..|+.|++...-++- +-+|+|.|+++- ++|..|+....+.++.. |.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~--~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSS--RQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhh--hhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 455778888999999999999999999998877774 667899999988 99999998887776542 21
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014213 118 ----------------------YSKALLKRARCYEALNRLDLAFRDV 142 (429)
Q Consensus 118 ----------------------~~kAl~~rA~ay~~LG~~deAl~~~ 142 (429)
-..|+...+-+++..++++.|.+.+
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 1235666677888888888876554
No 255
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.066 Score=52.91 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
...+..|+=..|++. ++++.|.....+.+.++|.++.-+.-+|.+|.++|.+.-|+.++...+..-|+.+.+.....+
T Consensus 180 l~rll~~lk~~~~~e--~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 180 LSRLLRNLKAALLRE--LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHh--hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 456778888889998 999999999999999999999999999999999999999999999999999999887666555
Q ss_pred HHH
Q 014213 162 VKK 164 (429)
Q Consensus 162 l~~ 164 (429)
+..
T Consensus 258 l~~ 260 (269)
T COG2912 258 LLE 260 (269)
T ss_pred HHH
Confidence 443
No 256
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.72 E-value=0.25 Score=57.84 Aligned_cols=114 Identities=8% Similarity=-0.062 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV--TPLYSKALLKRA 126 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel--dP~~~kAl~~rA 126 (429)
...-..|.+.|++++|+..|+...+...... ...|+.+..+|.+. |++++|+..|....+. .|+ ...|..+.
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~---~~tynsLI~ay~k~--G~~deAl~lf~eM~~~Gv~PD-~~TynsLI 656 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGT---PEVYTIAVNSCSQK--GDWDFALSIYDDMKKKGVKPD-EVFFSALV 656 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 3344456666666666666666665542111 13555566666666 6666666666665554 333 44555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHh
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKE-PKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~-P~n~~a~~~La~l~~~l~e 168 (429)
.+|...|++++|++.++.+.+.. +.+...+..+-..+...++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 66666666666666666666542 1233444444444444443
No 257
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.68 E-value=0.017 Score=55.95 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 98 LSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 98 ~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
.++++.|.+.|++|+++.|.|...|+++|.-....|+++.|.+.|++.|+++|.+-
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 37777777777888888888877888888777778888888888888888777653
No 258
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.68 E-value=0.095 Score=58.20 Aligned_cols=115 Identities=7% Similarity=-0.118 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--LYSK 120 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--~~~k 120 (429)
...|......|.+.|++++|+..|++.++.. |+. ..|..+-.++.+. |.+++|...++...+..+ .+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~-----~T~~~ll~a~~~~--g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH-----VTFLAVLSACRYS--GLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHhcC--CcHHHHHHHHHHHHHhcCCCCCcc
Confidence 3458888999999999999999999988753 332 3566666777777 999999999999886432 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
.|..+..+|...|++++|++.+++. ...|+ ...|..+-..+...+.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKN 509 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence 7888899999999999999998864 23454 4556666666555543
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.61 E-value=0.067 Score=56.82 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=83.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---------------
Q 014213 52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--------------- 116 (429)
Q Consensus 52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--------------- 116 (429)
-..+.+..+++.-+.+-.+||+++|+-+. +|.-+|.-.. ....+|...+.+|++...
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAd----AYILLAEEeA----~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCAD----AYILLAEEEA----STIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhH----HHhhcccccc----cCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 34567899999999999999999997663 6665654321 235666666666664421
Q ss_pred ------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhhcccc
Q 014213 117 ------L----YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKRGLRV 173 (429)
Q Consensus 117 ------~----~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~~~a~ 173 (429)
. ...+-+++|.|...+|+.++|++.++..++..|. +..++.++-.++-.++..+.+.
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 0 1335578899999999999999999999998885 5667777777777666555443
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.58 E-value=0.081 Score=46.48 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL 112 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL 112 (429)
.....+...+..+...|++++|+..+.+++.++|.+.. +|..+-.+|..+ |++.+|+..|++..
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~----~~~~lm~~~~~~--g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEE----AYRLLMRALAAQ--GRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH----HHHHHHHHHHHT--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 44455667788899999999999999999999999885 889999999999 99999999998764
No 261
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.57 E-value=0.83 Score=41.93 Aligned_cols=113 Identities=16% Similarity=0.011 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
...|.+........++.+++...+...-.+.|+..+ +...-|..|+.. |+|.+|+..++.+.+-.|.++-+--.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e----~~~~~~~l~i~r--~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE----LDLFDGWLHIVR--GDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHh--CCHHHHHHHHHHHhccCCCChHHHHH
Confidence 456888888999999999999999998889999886 666678888887 99999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
++.|++.+|+..-=. +...++...+ ++.+......+...
T Consensus 84 lA~CL~~~~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 84 LALCLYALGDPSWRR-YADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHcCChHHHH-HHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 899999999887654 3445666544 66666666655543
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.53 E-value=0.18 Score=48.31 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=73.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCCccHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhCCC------
Q 014213 54 KLFQKRDHGGALLKYEKALKLLP---RNHIDVSYLRSNMAACYMQMGLSE-------YPRAIHECNLALEVTPL------ 117 (429)
Q Consensus 54 ~lf~~gdyeeAl~~Y~kALel~P---~~~~~~a~l~~nrA~~y~kl~~g~-------y~eAi~~~~~ALeldP~------ 117 (429)
.+-..+.+++|+..|.-||-..- ..+...+.++..+|.+|-.+ ++ +..|+..|.+|++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~--~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL--GDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 56667889999999998876532 23334678888899999888 77 45566667777665432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
....+|.+|..++.+|++++|++.|.+++..--.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 2578899999999999999999999999987433
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.073 Score=54.18 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc----------------------------------HHHHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID----------------------------------VSYLRSNMAAC 92 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~----------------------------------~a~l~~nrA~~ 92 (429)
..-..+..++.+|++.+|...+++.|.-.|.+-.. ..+++-..|.+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34455778889999999999999999888875420 02344445555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213 93 YMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 93 y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~ 143 (429)
++.. |-|++|...+++|++++|.+..|...++.++...|++.+++++..
T Consensus 185 L~E~--g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 185 LEEC--GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHh--ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555 566666666666666666666666666666666666665555544
No 264
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=0.0038 Score=63.20 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213 99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND 175 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e 175 (429)
|.++.||..|..||.++|.....|-.|+.+|..|++...|+.+|..|+.++|+...-+...+.+...++....+...
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999988888888888888776655553
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.44 E-value=0.52 Score=46.29 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCCCCHH-
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG------LSEYPRAIHECNLALEVTPLYSK- 120 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~------~g~y~eAi~~~~~ALeldP~~~k- 120 (429)
....+-.+++.++|++|+...++-+.+.|+++ ....+++.+|.+++..- +.-..+|+..+...|+.-|+..-
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 56788999999999999999999999999887 46677778888877641 12246788899999999887421
Q ss_pred --------------HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 121 --------------AL--LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 121 --------------Al--~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
|. +..|.-|...|.|-.|..-++.+++--|+...+...|..+....
T Consensus 153 ~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY 214 (254)
T COG4105 153 PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAY 214 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 12 33477888999999999999999999888776666665554444
No 266
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.43 E-value=0.17 Score=56.85 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=75.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213 54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN 133 (429)
Q Consensus 54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG 133 (429)
.....++|..|+....+.++..|+.. ++...-|..+.++ |.+++|...++..-...+++-..+--+-.||..++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~--gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRL--GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHh--cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 45677889999999999999999866 4666678888888 99999994444444455677788888889999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 014213 134 RLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 134 ~~deAl~~~~kAL~l~P~ 151 (429)
++++|+..|++++.-+|+
T Consensus 92 ~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhhHHHHHHHHHHhhCCc
Confidence 999999999999999998
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.23 Score=50.68 Aligned_cols=69 Identities=13% Similarity=-0.060 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHh-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 99 SEYPRAIHECNLALEV-TPL---YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 99 g~y~eAi~~~~~ALel-dP~---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
|+.......+++.+.. +|+ ++-..-..|.++...|-|++|.+..+++++++|.+..+....+-+...-+
T Consensus 151 G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~ 223 (491)
T KOG2610|consen 151 GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNG 223 (491)
T ss_pred cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Confidence 5555555555555544 433 24444455677778888888888888888888877776666666654433
No 268
>PLN03077 Protein ECB2; Provisional
Probab=95.10 E-value=0.35 Score=55.00 Aligned_cols=115 Identities=7% Similarity=-0.065 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
+...-..+.+.|++++|...|+...+..+-.+. ...|..+..+|.+. |++++|...++.. .+.|+ ...|..+-.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~--G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ 665 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRA--GKLTEAYNFINKM-PITPD-PAVWGALLN 665 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhC--CCHHHHHHHHHHC-CCCCC-HHHHHHHHH
Confidence 333345677889999999999998854332221 13678888999998 9999999988764 45665 556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
++..-++.+.|....+++++++|++...+..+..++...++
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 78888999999999999999999999988888877765543
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.03 E-value=0.044 Score=37.11 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213 86 RSNMAACYMQMGLSEYPRAIHECNLAL 112 (429)
Q Consensus 86 ~~nrA~~y~kl~~g~y~eAi~~~~~AL 112 (429)
|.++|.+|.++ |+|++|+..|+++|
T Consensus 2 l~~Lg~~~~~~--g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQ--GDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHC--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 34455555555 55555555555533
No 270
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.8 Score=44.74 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=87.4
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----
Q 014213 48 LKEEGNKLFQK-RDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS----- 119 (429)
Q Consensus 48 lk~~Gn~lf~~-gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~----- 119 (429)
+++.|..|=.. .+++.|+.+|++|-+....+... ...++...|..-.++ ++|.+||..|++.....-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l--eqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL--EQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHHHhH
Confidence 44666666555 78999999999999987754421 123445555555566 899999999998876654432
Q ss_pred -H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHhhcccc
Q 014213 120 -K-ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA--EIAERVKKELEKRGLRV 173 (429)
Q Consensus 120 -k-Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~--~~La~l~~~l~e~~~a~ 173 (429)
+ -++..|.|+....+.-.+-..+++...++|+....+ ..+..+...+.+...+.
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~ 251 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEK 251 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHH
Confidence 2 356668899998999999999999999999765443 45566666666554443
No 271
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.15 Score=50.45 Aligned_cols=123 Identities=17% Similarity=0.080 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCCccHHHHHHHHHHHHHHc--CCCCHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLL-------------------------PRNHIDVSYLRSNMAACYMQM--GLSEYP 102 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~-------------------------P~~~~~~a~l~~nrA~~y~kl--~~g~y~ 102 (429)
.-|..+...++|++|+........+. -.-.+ -..+..+|.+|.++ +-+.+.
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhh
Confidence 34677888888888886654422211 10000 12344456555554 124688
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
.|.-.|+..-+.-|..+..+...|.|+..+|+|++|...++.||.-++++++++.++-.+-..++.......
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 888888888887777888999999999999999999999999999999999999988877776665544444
No 272
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.72 E-value=0.058 Score=34.79 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL 117 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~ 117 (429)
+++++|.||.++ |++++|+..+++++...|+
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 456677777776 7777777777777776665
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.64 E-value=0.57 Score=43.46 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHHH-
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--LYSKA- 121 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--~~~kA- 121 (429)
...+.++|+-|++-|+++.|+..|.++.+...... ....++.++-.+.+-+ ++|..+.....+|-.+-. .++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-~~id~~l~~irv~i~~--~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-HKIDMCLNVIRVAIFF--GDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhccchHHHH
Confidence 45688999999999999999999999888754332 3445556666666667 999999999998876532 22222
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 122 ---LLKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 122 ---l~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
.-..|.++...++|..|-..|-.++.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22336777788899999877766553
No 274
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.55 E-value=0.24 Score=40.92 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH
Q 014213 64 ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKALLKRARCYEALNRL 135 (429)
Q Consensus 64 Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kAl~~rA~ay~~LG~~ 135 (429)
.+..+++++..+|++.. +.+.+|.+++.. |+|++|+..+-.+++.+++| ..+--.+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~~----ar~~lA~~~~~~--g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD----ARYALADALLAA--GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HH----HHHHHHHHHHHT--T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 46678999999999985 888999999999 99999999999999999887 34444444555555543
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.51 E-value=0.16 Score=52.22 Aligned_cols=99 Identities=22% Similarity=0.229 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT------ 115 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~------~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld------ 115 (429)
+...|..+-+.+||+.|+.+..+|+++...... .+...++.++.+|-.+ |+...|.+.|++|.++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~--G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL--GRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHhCCh
Confidence 456788888999999999999999998654331 2345667788888888 99999999999998774
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 116 PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 116 P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
|.+...+.-+|.+|..+|+.+.|..-|+.|...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 456677888899999999999999999999875
No 276
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.40 E-value=0.45 Score=47.16 Aligned_cols=101 Identities=14% Similarity=-0.032 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
|....+..-+.+..+.|-..|.+|+...+... .+|...|..-++. .++...|...|++++..-|.+...|+....
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~----~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTY----HVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T----HHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44455555555568889999999985433334 3666666665553 166666999999999999999999999889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
-+..+++.+.|...|++++..-|...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 99999999999999999998877655
No 277
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.37 E-value=0.4 Score=51.18 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcC
Q 014213 58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS----KALLKRARCYEALN 133 (429)
Q Consensus 58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~----kAl~~rA~ay~~LG 133 (429)
..+.+.|.......+...|+.. ..+...|..+... |+.++|+..+++++.....+. -.++.+|.|+..+.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~----lfl~~~gR~~~~~--g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA----LFLFFEGRLERLK--GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHh--cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 4456778888888888889876 3677788888888 999999999999996554443 36899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHH
Q 014213 134 RLDLAFRDVTTVLNKEPKNIMAAEIAER-VKKELE 167 (429)
Q Consensus 134 ~~deAl~~~~kAL~l~P~n~~a~~~La~-l~~~l~ 167 (429)
+|++|..+|.+.++.+.-....+..+.- ++..++
T Consensus 320 ~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 9999999999999976655554444444 444343
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.11 E-value=1.6 Score=43.32 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--C-C---
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV--T-P--- 116 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel--d-P--- 116 (429)
..+..+...+..+.+.|.++.|...+.++....+........+..-.+..+... |+..+|+..+...+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~--g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ--GEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhcccc
Confidence 445678888999999999999999999999877433221223555567777777 9999999988887771 1 0
Q ss_pred ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 117 ----------------------------LYSKALLKRARCYEAL------NRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 117 ----------------------------~~~kAl~~rA~ay~~L------G~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
...++++.+|.-...+ +.+++++..|..++.++|+...++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1235677777777777 888999999999999999999999998888
Q ss_pred HHHHHh
Q 014213 163 KKELEK 168 (429)
Q Consensus 163 ~~~l~e 168 (429)
...+-+
T Consensus 302 ~~~~~~ 307 (352)
T PF02259_consen 302 NDKLLE 307 (352)
T ss_pred HHHHHH
Confidence 776643
No 279
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.08 E-value=0.069 Score=56.62 Aligned_cols=86 Identities=16% Similarity=0.070 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CCCCC-----ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALK-L--------LPRNH-----IDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALe-l--------~P~~~-----~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ 110 (429)
...+++.|-.+|+.|.|.-+..+|.+||+ . .|.-. .-.--+++|.|..|+.+ |+.-.|.++|.+
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~--grPl~AfqCf~~ 360 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS--GRPLLAFQCFQK 360 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc--CCcHHHHHHHHH
Confidence 34467889999999999999999999996 1 11100 01124788999999999 999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 014213 111 ALEVTPLYSKALLKRARCYEAL 132 (429)
Q Consensus 111 ALeldP~~~kAl~~rA~ay~~L 132 (429)
+...--.+++.|+|+|.|+..-
T Consensus 361 av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 280
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.08 E-value=0.068 Score=51.84 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=54.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213 54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS 119 (429)
Q Consensus 54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~ 119 (429)
.+++.+|++.|.+.|.+|+++.|.... .|+.+|....+. |+++.|...|++.|+++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~----gwfR~g~~~eka--g~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAA----GWFRLGEYTEKA--GEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhh----hhhhcchhhhhc--ccHHHHHHHHHHHHcCCcccc
Confidence 467889999999999999999998774 899999999998 999999999999999999764
No 281
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.07 E-value=0.16 Score=54.93 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=86.8
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 50 EEGNKLF-QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 50 ~~Gn~lf-~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
..+..|+ .+|+..+|+.+|..|+.+.|....++ ++..+|..+.++ |...+|--.+..|+.-.|....-+|.++.+
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi--~lLSlaTiL~Ra--G~sadA~iILhAA~~dA~~~t~n~y~l~~i 292 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDI--ALLSLATVLHRA--GFSADAAVILHAALDDADFFTSNYYTLGNI 292 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccc--hhhhHHHHHHHc--ccccchhheeehhccCCccccccceeHHHH
Confidence 4444444 48999999999999999999866544 566799999999 999999988899998888887789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 129 YEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
|.+++.|...+..|..+++..|....
T Consensus 293 ~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 293 YAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred HHHHhhhhhhhhhhhhhhccCcchhH
Confidence 99999999999999999999997644
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=1.9 Score=42.51 Aligned_cols=116 Identities=16% Similarity=0.045 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCC
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-----TPL 117 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----dP~ 117 (429)
|..+...++.|-...+|+.|-.++.+|++...++.. +.+..|-..+...-.+ ..+.++...+++|..+ .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~--~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKEL--SKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhCCcc
Confidence 455666677777889999999999999977665543 2344555555556666 8899999999999876 355
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Q 014213 118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEP---KNIMAAEIAERV 162 (429)
Q Consensus 118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P---~n~~a~~~La~l 162 (429)
-.-.-+.+|--....-+.++|++.|++++.+-- ....+...++.+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 444444444444556789999999999987733 334444444443
No 283
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.94 E-value=0.29 Score=40.44 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 55 LFQKRDHGGALLKYEKALKLLPRNHI-----DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 55 lf~~gdyeeAl~~Y~kALel~P~~~~-----~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
....|+|.+|++.+.+.+........ ....+..++|.++..+ |++++|+..+++|+++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~--G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF--GHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 34556666666665555555443221 1123334444444444 4444444444444443
No 284
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.73 Score=45.66 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=97.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 014213 55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR 134 (429)
Q Consensus 55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~ 134 (429)
+++...-..|+.+-..+|.++|.+.. +|..|-.|+-.| ..+..+-+.+.++.++-+|.+...|..|-.+...+|+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYT----VW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYT----VWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccch----HHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC
Confidence 34455567899999999999999984 777777777666 2577888999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccc
Q 014213 135 LD-LAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRV 173 (429)
Q Consensus 135 ~d-eAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~ 173 (429)
+. .-+...+.++..+..|--+|...+.+....+....+.
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 88 8899999999999999999999999998887644433
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.63 E-value=1 Score=44.85 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----------------------------CccHHHHHHHHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALK-LLPRN-----------------------------HIDVSYLRSNMAACYMQ 95 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALe-l~P~~-----------------------------~~~~a~l~~nrA~~y~k 95 (429)
....+.+..++..|+..+|+......+. ..... ....+.++..+|.....
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3456778888899999999999988888 22111 01234555666655555
Q ss_pred c----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 014213 96 M----GLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRL-----------------DLAFRDVTTVLNKEPK 151 (429)
Q Consensus 96 l----~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~-----------------deAl~~~~kAL~l~P~ 151 (429)
+ ..+.+++++..|..|+.++|.+.++|+..|..+..+=.. ..|+..|-+++.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 4 457889999999999999999999999999877655221 3488888888888776
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.61 E-value=0.16 Score=34.25 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
.++.|+|.+|..+ |+|++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQ--GRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHC--T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--hhcchhhHHHHHHHHH
Confidence 3455555555555 5555555555555543
No 287
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=1.1 Score=48.70 Aligned_cols=106 Identities=18% Similarity=0.038 Sum_probs=82.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCCCHHHHHHH----
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE-YPRAIHECNLALEVTPLYSKALLKR---- 125 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~-y~eAi~~~~~ALeldP~~~kAl~~r---- 125 (429)
....+...++...|+.....++..+|.+.. ++.|++.+.+.. +. +.-++..+..+....|++..++..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~L~~ale~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCP----AVQNLAAALELD--GLQFLALADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccch----HHHHHHHHHHHh--hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 445556677777888888888888888886 888888887776 54 4445555556889999988876666
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 126 --ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 126 --A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
+..+..+++..++..++.+++.+.|.++.+...+...
T Consensus 147 ~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 147 QLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888888899999999999999999887766666555
No 288
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.25 E-value=1 Score=47.94 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=96.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKALLKRARCYEALNR 134 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kAl~~rA~ay~~LG~ 134 (429)
...|.+.+-..|+.+|++.|.-.-..+.+|...|.-..+. -+...|...+-.||...|.+ .+.|. ..-..|++
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq--~~l~~ARkiLG~AIG~cPK~KlFk~YI---elElqL~e 452 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ--LNLTGARKILGNAIGKCPKDKLFKGYI---ELELQLRE 452 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH--cccHHHHHHHHHHhccCCchhHHHHHH---HHHHHHhh
Confidence 5678889999999999999987766777888777777776 89999999999999999974 23333 23457789
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213 135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180 (429)
Q Consensus 135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L 180 (429)
++.....|++.|...|.|-.+|...+.+...|++...+-.-....+
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987665554333334
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.06 E-value=4.1 Score=40.21 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----C---C---ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213 42 IGMSQELKEEGNKLFQKR-DHGGALLKYEKALKLLPR----N---H---IDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~----~---~---~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ 110 (429)
...+..+++-|..++.++ +|+.|+..+++|+++... . + +.+..++..++.+|+.. +.++... -|..
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~--~~~~~~~-ka~~ 108 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEW--DTYESVE-KALN 108 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcC--CChHHHH-HHHH
Confidence 388899999999999999 999999999999998421 1 1 13567888899999998 6655333 3444
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 111 ALEV----TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 111 ALel----dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P 150 (429)
+++. -|+.+..++..=.++...++.+++.+.+.+.+..-+
T Consensus 109 ~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 109 ALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4433 477666664444444458899999999999888654
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.01 E-value=0.23 Score=33.48 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 119 SKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999976
No 291
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.00 E-value=0.97 Score=48.13 Aligned_cols=99 Identities=18% Similarity=0.082 Sum_probs=87.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
..-|.---.++++..|-..|++||..+-.+.+ +|...+.+-|+- .....|...+++|+.+-|.--+.||..-..
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~it----LWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNIT----LWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccch----HHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344444678899999999999999988885 999999998887 999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213 129 YEALNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL~l~P~n~ 153 (429)
-..||+...|.+.|++=+...|+..
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999999999753
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.94 E-value=0.67 Score=44.39 Aligned_cols=89 Identities=17% Similarity=0.070 Sum_probs=66.4
Q ss_pred HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213 40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL 117 (429)
Q Consensus 40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~ 117 (429)
..|+.|--++..|+......=+..|+..|.+|++.... ...+...+.+.+|..+.++ |++++|+.++.+++...-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl--g~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL--GNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHcCCCC
Confidence 45566777777777666666688999999999987654 3334567888899999999 9999999999999976533
Q ss_pred C-HHHHHHHHHHHH
Q 014213 118 Y-SKALLKRARCYE 130 (429)
Q Consensus 118 ~-~kAl~~rA~ay~ 130 (429)
. ...+..+|+-+.
T Consensus 198 s~~~~l~~~AR~~w 211 (214)
T PF09986_consen 198 SKEPKLKDMARDQW 211 (214)
T ss_pred CCcHHHHHHHHHHH
Confidence 3 246666665443
No 293
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.80 E-value=1.5 Score=49.59 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
....|..+++.|++++|+.+. +++...+.+.. ..+.-+-.||-.+ +++++|...|++++..+|. -.-++.+-.
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~---~tLq~l~~~y~d~--~~~d~~~~~Ye~~~~~~P~-eell~~lFm 118 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLL-EALYGLKGTDD---LTLQFLQNVYRDL--GKLDEAVHLYERANQKYPS-EELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHH-hhhccCCCCch---HHHHHHHHHHHHH--hhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence 345788999999999999544 55555554432 3566788999999 9999999999999999999 888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
||.+-+.|..=-+.--+..+.-|+++-.....-.+
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 99999999876666666666788887654444443
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=1.2 Score=43.66 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP--RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P--~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k 120 (429)
+.+.-+...||.|-...+|..|=..|-+|-++-- .+..+.++.|.-.+.||-+ .+..+|+..+++|+++--+-.+
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk---~~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK---VDPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc---cChHHHHHHHHHHHHHHHhhhH
Confidence 3345566667777778889999888988876543 2333567889999999977 6999999999999999755333
Q ss_pred ------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 014213 121 ------ALLKRARCYEAL-NRLDLAFRDVTTVLNKE 149 (429)
Q Consensus 121 ------Al~~rA~ay~~L-G~~deAl~~~~kAL~l~ 149 (429)
-+..+|..|+.- .+++.|+.+|+.|-..-
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 355778888755 89999999999988763
No 295
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.54 E-value=1.4 Score=36.19 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 99 SEYPRAIHECNLALEVTPL---------YSKALLKRARCYEALNRLDLAFRDVTTVLNKE 149 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~---------~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~ 149 (429)
++|..|++.+.+.++.... ..-+++++|.++..+|++++|+..+++|+.+.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999988888765421 34688999999999999999999999999884
No 296
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.50 E-value=1.9 Score=42.74 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--H-HHH
Q 014213 48 LKEEGNKLFQ-KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS--K-ALL 123 (429)
Q Consensus 48 lk~~Gn~lf~-~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~--k-Al~ 123 (429)
|..-|..-+. .++.+.|...|+.+++..|.+.. +|..-...+..+ ++...|...|++++..-|... + .|-
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~~~--~d~~~aR~lfer~i~~l~~~~~~~~iw~ 111 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLIKL--NDINNARALFERAISSLPKEKQSKKIWK 111 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHHHT--T-HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHh--CcHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 5555665455 77888899999999999999875 555555667777 999999999999998876654 3 444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI 158 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~ 158 (429)
+...-=...|+++......+++..+-|.+......
T Consensus 112 ~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 112 KFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44555567889999999999999999986554443
No 297
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.39 E-value=0.86 Score=52.60 Aligned_cols=116 Identities=10% Similarity=0.159 Sum_probs=87.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-----LSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-----~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
-.+.++....|+.|+..|.+...-.|.-.+-+ -+.+..|.+.+..- +..+.+|+..|++. .-.|.-+--|+..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGY-EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 35677788999999999999999999755421 13344555544320 12477777777654 3345666779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
|.+|..+|+|++-+++|.-|++.-|+++..-.....+..+|.+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888777777754
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.37 E-value=4.9 Score=36.59 Aligned_cols=109 Identities=15% Similarity=0.035 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..+.+.........++.++.......--+-|+..+ +...-+..|+.. |+|.+|+..++...+-.+.++-+--.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e----~d~~dg~l~i~r--g~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE----LDMFDGWLLIAR--GNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc----cchhHHHHHHHc--CCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 44556666666799999999998888888899886 666677888887 999999999999999998888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
+.|++.+|+.+-=. +...++...+ ++++......+
T Consensus 85 A~CL~al~Dp~Wr~-~A~~~le~~~-~~~a~~Lv~al 119 (153)
T TIGR02561 85 ALCLNAKGDAEWHV-HADEVLARDA-DADAVALVRAL 119 (153)
T ss_pred HHHHHhcCChHHHH-HHHHHHHhCC-CHhHHHHHHHH
Confidence 99999999977643 3344554433 44544444443
No 299
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=92.32 E-value=0.69 Score=37.60 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=47.3
Q ss_pred EEccCCccHHHHHHHHHhhCCC-CCceEEEEE-CCCCCEEEecChHHHHHHHHhhccCCcEEEEEEeeCC
Q 014213 275 AQLPLNSSLLQLREVISDRFPS-CRAVLIKYR-DEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNP 342 (429)
Q Consensus 275 ~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~-DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~e~~~ 342 (429)
..+|.++++.+|..++...|+. ...++|.|+ |.+|..+...++|+-. +.......-++|+|.+.+|
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~--L~~y~~~dg~~i~V~D~~p 85 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDAT--LGSYGIKDGMRIHVVDTNP 85 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSB--CCHHT-STTEEEEEEE-T-
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccE--eecCCCCCCCEEEEEeCCC
Confidence 4489999999999999999964 466999999 6777777777665531 2222333449999998876
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.11 E-value=1.7 Score=46.51 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 014213 62 GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR-LDLAFR 140 (429)
Q Consensus 62 eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~-~deAl~ 140 (429)
..-+..|..|+...+.+.. +|++-.. |++. .+.|.+.-..|.++|...|+++..|..-|.-.+..+. .+.|..
T Consensus 88 ~rIv~lyr~at~rf~~D~~----lW~~yi~-f~kk-~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVK----LWLSYIA-FCKK-KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHHhcCCCHH----HHHHHHH-HHHH-hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence 3456789999998888774 6665433 3333 1569999999999999999999999999988877776 899999
Q ss_pred HHHHHHHhCCCCHHHHHHHHH
Q 014213 141 DVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 141 ~~~kAL~l~P~n~~a~~~La~ 161 (429)
.|.++|..+|+++..+...=+
T Consensus 162 lflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 162 LFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHHHHhhcCCCChHHHHHHHH
Confidence 999999999999987765544
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.08 E-value=1.7 Score=45.41 Aligned_cols=94 Identities=20% Similarity=0.064 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
...++....-.|+|++|-..|+..+. +|... ++-.+|..+...+.|.++.|+++..+|-+..|.-..++...-.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-----llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETR-----LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-----HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 45678888889999999999987665 45432 3344454444444599999999999999999999999999889
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 014213 128 CYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~ 147 (429)
.....|+|+.|++.++....
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHhcCChHHHHHHHHHHHH
Confidence 99999999999999977654
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.85 E-value=1.7 Score=46.59 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL--YSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~--~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
.+...+|.|.-++ |+.++||..+...++..|. +....+++-.||..++.|.++-..+.+.
T Consensus 260 y~KrRLAmCarkl--Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKL--GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHh--CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4556677777777 7777777777777766654 4556777777777777777776666654
No 303
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.44 E-value=2.4 Score=44.36 Aligned_cols=96 Identities=17% Similarity=0.069 Sum_probs=73.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 54 KLFQKRDHGGALLKYEKALKLL---PRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 54 ~lf~~gdyeeAl~~Y~kALel~---P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
.....|+|+.|+.+.+...... +...+ .++.++...+...+. .+...|..+...++.+.|++..+-.--+.+|
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld---adp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD---ADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 4557788888888877554432 22111 245666666666555 4888999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 014213 130 EALNRLDLAFRDVTTVLNKEPKN 152 (429)
Q Consensus 130 ~~LG~~deAl~~~~kAL~l~P~n 152 (429)
...|+...+-..++.+-+.+|+-
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCCh
Confidence 99999999999999999998853
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=1.1 Score=44.49 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC 128 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a 128 (429)
.+.=+.|...++++.|+.+-++.|.++|.++. -+.-+|.+|.++ |.+.-|+.++...++..|+.+.+-.-++..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~----eirDrGliY~ql--~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPY----EIRDRGLIYAQL--GCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChh----hccCcHHHHHhc--CCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34446788999999999999999999999984 567799999999 999999999999999999998877666554
Q ss_pred H
Q 014213 129 Y 129 (429)
Q Consensus 129 y 129 (429)
.
T Consensus 259 ~ 259 (269)
T COG2912 259 L 259 (269)
T ss_pred H
Confidence 3
No 305
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.99 E-value=0.8 Score=41.11 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 48 LKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 48 lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
.++.+-.+....+ -.+.+..++..++- .+++.+-.+.+.+|..|.++ ++|+.++.+++..|+.+|+|..|.-.
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRl--keY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRL--KEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHH--hhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4555666665444 56688888888872 22222234566699999999 99999999999999999999887655
Q ss_pred HHHH
Q 014213 125 RARC 128 (429)
Q Consensus 125 rA~a 128 (429)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
No 306
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.85 E-value=5.3 Score=41.60 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCCCC
Q 014213 50 EEGNKLFQ---KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-------LSEYPRAIHECNLALEVTPLY 118 (429)
Q Consensus 50 ~~Gn~lf~---~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-------~g~y~eAi~~~~~ALeldP~~ 118 (429)
..|..+-+ .|+.+.|+..+..++.......+ -.++-+|..|-.+- ....++||..|.++.+++|++
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~---d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDP---DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 34555555 78999999998886665443332 25555555553321 134778999999998888743
No 307
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.65 E-value=1.1 Score=39.52 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL------------YSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~------------~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
+..|..++....++.-|.|++|...|.+|+++.-. +.-.+-.++.++..||+|++++...+++|..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 34555566555555458999999999999987522 2335778899999999999999988888864
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.29 E-value=3.9 Score=37.61 Aligned_cols=86 Identities=10% Similarity=-0.026 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~ 163 (429)
..+..+..+-++. ++.+++...+...--+.|.+...-.--|..+...|+|.+|+..|+.+..-.|..+.+...++.|+
T Consensus 11 ~gLie~~~~al~~--~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRL--GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3445555555666 89999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 014213 164 KELEKRGL 171 (429)
Q Consensus 164 ~~l~e~~~ 171 (429)
..+++...
T Consensus 89 ~~~~D~~W 96 (160)
T PF09613_consen 89 YALGDPSW 96 (160)
T ss_pred HHcCChHH
Confidence 88876543
No 309
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=1.6 Score=43.86 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213 89 MAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 89 rA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~ 143 (429)
-+.-.+.. |++.+|...+..+++.+|.+..+.+.++.||...|+.+.|...+.
T Consensus 140 ~~~~~~~~--e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 140 EAKELIEA--EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred Hhhhhhhc--cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 45556666 999999999999999999999999999999999999988876554
No 310
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=2.9 Score=43.75 Aligned_cols=106 Identities=18% Similarity=0.078 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----C
Q 014213 59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN----R 134 (429)
Q Consensus 59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG----~ 134 (429)
.-.++-+.+-..||+.+|+.. .+|.-|..++.+...-++..=+..|+++|++||.+.-+|..|-.++.... .
T Consensus 89 ~~ld~eL~~~~~~L~~npksY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 356777888889999999887 48999999998874445899999999999999999888766655554333 2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
..+-+++..+++.-++.|-.+|.....+...+-.
T Consensus 165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~ 198 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHP 198 (421)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHHHHHHhcc
Confidence 6788999999999999999999999998887643
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.77 E-value=8.2 Score=42.10 Aligned_cols=106 Identities=26% Similarity=0.204 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 48 LKEEGNKLFQKR-----DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPLYSKA 121 (429)
Q Consensus 48 lk~~Gn~lf~~g-----dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~~~kA 121 (429)
....|..|++.. ++..|+.+|.+|-.+...+ +.+++|.||+.-. ..++..|..+|..|... .+..|
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD------AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch------HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHH
Confidence 446788888743 7899999999999986544 5578999998841 13578999999888655 47899
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 122 LLKRARCYEAL----NRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163 (429)
Q Consensus 122 l~~rA~ay~~L----G~~deAl~~~~kAL~l~P~n~~a~~~La~l~ 163 (429)
.+++|.||..= -+...|..+|.+|.... ++.+...+....
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 99999999743 37899999999999987 455555555443
No 312
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.55 E-value=11 Score=36.73 Aligned_cols=108 Identities=23% Similarity=0.105 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc---CCC--CHHHHHHHHHHHHHhCC
Q 014213 46 QELKEEGNKLFQ----KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM---GLS--EYPRAIHECNLALEVTP 116 (429)
Q Consensus 46 ~~lk~~Gn~lf~----~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl---~~g--~y~eAi~~~~~ALeldP 116 (429)
......|..|+. ..|+.+|+..|.+|.+..-... +.+..+++.+|..- .-- +...|+..+.+|-...
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 356677887777 5589999999999998744322 12356677777652 001 3347888888887776
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 117 LYSKALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 117 ~~~kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
+..+.+++|.+|.. ..++.+|...|.+|-.... ..+...+.
T Consensus 186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 78899999988854 2378999999999998865 55555555
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.08 E-value=13 Score=39.79 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCccH---------------------------------------
Q 014213 43 GMSQELKEEGNKLFQKRD-HGGALLKYEKALKLLPRNHIDV--------------------------------------- 82 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gd-yeeAl~~Y~kALel~P~~~~~~--------------------------------------- 82 (429)
..+.-+..-+..++..|. -+.|++....+++..|.+-+-.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 445667777888888888 6778888888888877653200
Q ss_pred ---HHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213 83 ---SYLRSNMAAC--YMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 83 ---a~l~~nrA~~--y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~ 143 (429)
+-+-+.++.+ ++.. |+|.++.-++.=..+++| .+.+|..+|.|+....+|++|..++.
T Consensus 457 i~e~eian~LaDAEyLysq--gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQ--GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred ccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122233333 2333 999999999999999999 89999999999999999999998876
No 314
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=88.93 E-value=2.3 Score=34.48 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=48.1
Q ss_pred ceEEEE--ccCCccHHHHHHHHHhhCCC-CCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEEeeCC
Q 014213 271 DIRVAQ--LPLNSSLLQLREVISDRFPS-CRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNP 342 (429)
Q Consensus 271 DiR~~~--i~~~~~~~~L~~~v~~kf~~-~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~e~~~ 342 (429)
..+... +|.+.++.+|.+++...|+. ....+|-|.|.+|..|..-++|+-. +.......-.+|+|+..+|
T Consensus 11 ~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~--L~~y~~~dg~~IhVvD~~p 83 (84)
T cd01789 11 DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDAL--LGSYPVDDGCRIHVIDVSG 83 (84)
T ss_pred CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccE--eeeccCCCCCEEEEEeCCC
Confidence 355555 89999999999999999953 5668888788787776644333322 2222223338999998776
No 315
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=88.79 E-value=3.4 Score=49.03 Aligned_cols=115 Identities=12% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR 127 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ 127 (429)
|...-|....-|.-+.....|++|.++.... .+|..++-.|-+. +.+++|.+.+++-+.---.-.+.|...|.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd~~-----~V~~~L~~iy~k~--ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCDAY-----TVHLKLLGIYEKS--EKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHh--hcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3333343334455566666777877775433 3677777778777 88888888888877776666777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhh
Q 014213 128 CYEALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKR 169 (429)
Q Consensus 128 ay~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~ 169 (429)
.+...++-++|...+.+||+.-|. +.......+.+....++.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888888888888888888886 666666666666666543
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=2.3 Score=46.26 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=89.6
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCCccHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213 56 FQKRDH-GGALLKYEKALKLLPRNHIDVSYLRSN-MAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN 133 (429)
Q Consensus 56 f~~gdy-eeAl~~Y~kALel~P~~~~~~a~l~~n-rA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG 133 (429)
+..+.. ..|+..|..-+.++|.++. .++.+ ++..+..+ +....++-....++..+|.+..++.++|.++...|
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~---llla~~lsi~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~ 115 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPE---LLLAAFLSILLAPL--ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG 115 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHH---HHHHHHHHhhcccc--ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh
Confidence 333443 4477778877888888775 21222 56677777 88889999999999999999999999999999988
Q ss_pred CHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHHHHHhhccccc--cccccCCC
Q 014213 134 RLDLAFRDVTT-VLNKEPKNIMAAEIA------ERVKKELEKRGLRVN--DTVIELPP 182 (429)
Q Consensus 134 ~~deAl~~~~k-AL~l~P~n~~a~~~L------a~l~~~l~e~~~a~~--e~~~~L~p 182 (429)
..-.++..+.. ++...|+|..+...+ +++...++..+.+.. +....+.|
T Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 116 LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 77776666665 999999999988888 666666665444433 33444543
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.52 E-value=1.6 Score=42.02 Aligned_cols=62 Identities=13% Similarity=-0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165 (429)
Q Consensus 104 Ai~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~ 165 (429)
|+.+|.+|+.+.|.+...|..+|..+...|+.=.|+-+|-+++...-..+.+..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888887655557777777777665
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.00 E-value=7.7 Score=39.22 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 014213 66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGL----------SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRL 135 (429)
Q Consensus 66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~----------g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~ 135 (429)
..|++.++-+|.+.. +|..+....-.+-. .-.+..+..+++||+.+|++...++.+=.++..+...
T Consensus 6 ~el~~~v~~~P~di~----~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVRENPHDIE----AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHHhCcccHH----HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 457788888888775 55444443333200 1145677888889999998888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 136 DLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 136 deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
+....-+++++..+|++...|...-
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL 106 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYL 106 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHH
Confidence 8888889999998888877665543
No 319
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=5.4 Score=39.39 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=47.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHhC--CCCHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPRAIHECNLA----LEVT--PLYSKAL 122 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~A----Leld--P~~~kAl 122 (429)
++.....+-++++|+..|++++.+...+..+ -.-++...+..|.++ ..|.+|-..+.+- ++.+ |...+++
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl--~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL--EKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh--HHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 3444445555666666666665554433221 122444455555555 5555554444332 2222 2333444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
...-.+|..+.+|..|...|+...++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 44444445555666666666665554
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.73 E-value=5.4 Score=39.37 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=74.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh----CC------C--
Q 014213 55 LFQKRDHGGALLKYEKALKLL----PRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEV----TP------L-- 117 (429)
Q Consensus 55 lf~~gdyeeAl~~Y~kALel~----P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALel----dP------~-- 117 (429)
+...|+++.|..+|.++=.+. |......+..++|.|...+.. + +|+.|+.++++|+++ .. +
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~--~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSK--KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 467899999999999997665 333335688899999999998 8 999999999999988 21 1
Q ss_pred --CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHH
Q 014213 118 --YSKALLKRARCYEALNRLDL---AFRDVTTVLNKEPKNIMAA 156 (429)
Q Consensus 118 --~~kAl~~rA~ay~~LG~~de---Al~~~~kAL~l~P~n~~a~ 156 (429)
....+..++.+|...+.++. |+..++.+-.-.|+.+...
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 23467888999998887654 4444444445567766665
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.26 E-value=9.1 Score=36.46 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHH---HHHHHHHHHHHhCCCCCcc-----------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213 51 EGNKLFQKRDHG---GALLKYEKALKLLPRNHID-----------------VSYLRSNMAACYMQMGLSEYPRAIHECNL 110 (429)
Q Consensus 51 ~Gn~lf~~gdye---eAl~~Y~kALel~P~~~~~-----------------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ 110 (429)
.|=.|++..+-+ +|-..|++++.......+. -......+|..+... +++++|+..++.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~--~~~d~A~aqL~~ 114 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEA--NNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhh--ccHHHHHHHHHH
Confidence 345555555444 6777788877765222111 122335567778888 999999999999
Q ss_pred HHHhCCC-CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213 111 ALEVTPL-YSK--ALLKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMAAEIAERVKKELEKRGLRVNDTVIELP 181 (429)
Q Consensus 111 ALeldP~-~~k--Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a~~~La~l~~~l~e~~~a~~e~~~~L~ 181 (429)
++....+ +.+ +-+|+|.++..+|.+++|+..++.... ++ .+......+.++-.++++..+...+...|.
T Consensus 115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 9865543 233 568899999999999999988764332 11 223456677788888888777776666664
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.20 E-value=3.1 Score=45.79 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTP------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE 157 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~ 157 (429)
.++.|-|.-++++ .+|..+++.|...+..-| ++.+....++.||..+.++|.|++++..|-+.+|.++-...
T Consensus 355 ~iLWn~A~~~F~~--~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 355 TLLWNTAKKLFKM--EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHhhHHHHHH--HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4667788899999 999999999999987654 46778888999999999999999999999999998875444
Q ss_pred HH
Q 014213 158 IA 159 (429)
Q Consensus 158 ~L 159 (429)
.+
T Consensus 433 ~~ 434 (872)
T KOG4814|consen 433 LM 434 (872)
T ss_pred HH
Confidence 33
No 323
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.03 E-value=0.99 Score=31.45 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
..|..+|.+-...++|+.|+.+|+++|.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35778888888888899999998888876
No 324
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.53 E-value=1.4 Score=47.41 Aligned_cols=76 Identities=24% Similarity=0.124 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALN---RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG---~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
+.+..||..|.++++..|+....|-++|.+|...+ +.-.|+.++..|+.++|....++..++++...+.....+..
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 45788999999999999999999999999988754 67789999999999999999999999999999988777665
No 325
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.93 E-value=15 Score=40.16 Aligned_cols=110 Identities=16% Similarity=0.054 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCCccHHHHHHHHHHHHHHcC--CC-CHHHHHHHHH
Q 014213 45 SQELKEEGNKLFQ-----KRDHGGALLKYEKALK-------LLPRNHIDVSYLRSNMAACYMQMG--LS-EYPRAIHECN 109 (429)
Q Consensus 45 A~~lk~~Gn~lf~-----~gdyeeAl~~Y~kALe-------l~P~~~~~~a~l~~nrA~~y~kl~--~g-~y~eAi~~~~ 109 (429)
+......|..++. .+|.+.|+.+|..|.+ .. ++ .+.+.+|.||++-. .. ++..|+..+.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~ 317 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----PAQYGLGRLYLQGLGVEKIDYEKALKLYT 317 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----ccccHHHHHHhcCCCCccccHHHHHHHHH
Confidence 3334455665554 3789999999999987 22 22 26678999999831 13 6788999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 110 LALEVTPLYSKALLKRARCYEALN---RLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 110 ~ALeldP~~~kAl~~rA~ay~~LG---~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
+|-.+. ++.+.+.+|.+|..-. ++..|..+|..|... .+..+...++.++.
T Consensus 318 ~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 318 KAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred HHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 887665 6788899999998766 578999999988875 67788888888765
No 326
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=85.88 E-value=10 Score=45.36 Aligned_cols=113 Identities=16% Similarity=-0.045 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCcc---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKL-LPRNHID---VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY 118 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel-~P~~~~~---~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~ 118 (429)
.-+..|.+-=.-+++.++.+.|-..+++||.. +++..++ ++.+|.|+=.+| |.-+.....|++|.+.. +-
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-----G~eesl~kVFeRAcqyc-d~ 1529 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-----GTEESLKKVFERACQYC-DA 1529 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-----CcHHHHHHHHHHHHHhc-ch
Confidence 44556777777788889999999999999885 4544432 456666666665 55566677777777765 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213 119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~ 161 (429)
...|..+..+|..-+++++|.+.|+..++---.....|..++.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 6778889999999999999999998888765444445544443
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.87 E-value=3.5 Score=41.20 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
..++..++..+... ++++.++..+++.+..+|-+-.+|.++=.+|+..|+...|+..|++.-.+
T Consensus 153 ~~~l~~lae~~~~~--~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIAC--GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35667778888887 88888889999999999988888888888999999988888888766553
No 328
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.81 E-value=3 Score=40.24 Aligned_cols=62 Identities=23% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 64 ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA 131 (429)
Q Consensus 64 Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~ 131 (429)
|..+|.+|+.+.|.+.. .|+.+|..+... ++.-.|+-.|-+++-..--+..|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~----p~nQLAvl~~~~--~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN----PYNQLAVLASYQ--GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH----HHHHHHHHHHHT--T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC----cccchhhhhccc--cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999985 999999999998 999999999999998776678888888888887
No 329
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.51 E-value=4.1 Score=36.62 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccc
Q 014213 118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLR 172 (429)
Q Consensus 118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a 172 (429)
-....+.+|......|+|..|+..++.++..+|+|..++...+.++..++.....
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3466788889999999999999999999999999999999999999999765543
No 330
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=24 Score=37.19 Aligned_cols=114 Identities=14% Similarity=0.057 Sum_probs=84.7
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHhCCCCHH
Q 014213 52 GNKLFQKRDH-GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG----------LSEYPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 52 Gn~lf~~gdy-eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~----------~g~y~eAi~~~~~ALeldP~~~k 120 (429)
=...-..|.| .+++..=.+.+..+|... ++|+.+-.++.... ..-+++-+.....+|..+|+...
T Consensus 35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~----t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~ 110 (421)
T KOG0529|consen 35 IQKKREAKEYDEEHLELTSELLEKNPEFY----TVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG 110 (421)
T ss_pred HHHHHhccccchHHHHHHHHHHhhCchhh----hhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence 3344455666 567777777888888655 36666555554320 02345566777889999999999
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213 121 ALLKRARCYEALNR--LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR 169 (429)
Q Consensus 121 Al~~rA~ay~~LG~--~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~ 169 (429)
+|+.|..++...+. +..-++.++++|+.+|.|-.+|....-+.......
T Consensus 111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99999999998874 68889999999999999999998888877666543
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.01 E-value=8.2 Score=39.91 Aligned_cols=101 Identities=17% Similarity=0.042 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-C----CHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP-L----YSKA 121 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP-~----~~kA 121 (429)
.+..-...+.++|-|..|++...-.+.++|.+.+ +...+..-|+.++.++|+=-+..++....... . .+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 4556667788999999999999999999998432 33333344444445899888888887665322 1 3357
Q ss_pred HHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 014213 122 LLKRARCYEALNRL---------------DLAFRDVTTVLNKEPK 151 (429)
Q Consensus 122 l~~rA~ay~~LG~~---------------deAl~~~~kAL~l~P~ 151 (429)
-|.+|.|+..+++- +.|-..+.+|+..-|.
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 78899999999998 8999999999998774
No 332
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.87 E-value=3 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.024 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 014213 120 KALLKRARCYEALNRLDLAFRD--VTTVLNKEPKN 152 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~--~~kAL~l~P~n 152 (429)
+.++.+|..+...|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 43666666543
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.81 E-value=24 Score=33.38 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCCCHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA-LEVTPLYSKALLKR 125 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~A-LeldP~~~kAl~~r 125 (429)
.....|..+.++|+-..|+..|+++-.-.|--..-+-.++..-+..++.- |.|+....-.+-. -.-+|-...|--.+
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~--gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN--GSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 35567888899999999999999987765533222223444445555555 8898866544321 12334445566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~ 164 (429)
|.+-+.-|+|..|...|..... +.+.+......+.+..
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 8888999999999999997776 4445554445444443
No 334
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.65 E-value=15 Score=39.48 Aligned_cols=98 Identities=19% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCCC-----
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL-EVTPLY----- 118 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL-eldP~~----- 118 (429)
+......|.....-+.|+.|...|..|+++..... ..+.+-.|+|..|++. ++-+ ++-+++ .+.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d-l~a~~nlnlAi~YL~~--~~~e----d~y~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID-LQAFCNLNLAISYLRI--GDAE----DLYKALDLIGPLNTNSLS 439 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH-HHHHHHHhHHHHHHHh--ccHH----HHHHHHHhcCCCCCCcch
Confidence 44556778888889999999999999999876433 3677889999999987 5433 233333 355553
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 119 -----SKALLKRARCYEALNRLDLAFRDVTTVLNKE 149 (429)
Q Consensus 119 -----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~ 149 (429)
..++|-.|.-.+..+++.||...+.+.|++.
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2368888998899999999999999999986
No 335
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.49 E-value=19 Score=40.05 Aligned_cols=143 Identities=15% Similarity=0.006 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP---------- 116 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP---------- 116 (429)
-|...|..|-..|+.+.|-..|++|+...=...++++.+|++-|..-++- .+++.|+...++|+.+--
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh--~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH--ENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh--hhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 36778888899999999999999999876666667888999888776666 899999998888875521
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCC
Q 014213 117 --------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPPEYVE 186 (429)
Q Consensus 117 --------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p~~~~ 186 (429)
+..+.|...+.....+|-++.-...|++.+.|-=..|....+.+..+..-..-..+.. ++.+.|- .-
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF---k~ 543 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF---KW 543 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC---CC
Confidence 2345667777778888888888888999998887788777777766554433333333 4455553 33
Q ss_pred CCcccccc
Q 014213 187 PPVTSIAP 194 (429)
Q Consensus 187 P~~~~~~a 194 (429)
|.--..|.
T Consensus 544 p~v~diW~ 551 (835)
T KOG2047|consen 544 PNVYDIWN 551 (835)
T ss_pred ccHHHHHH
Confidence 44444554
No 336
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.28 E-value=31 Score=36.16 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=74.1
Q ss_pred CCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCC------
Q 014213 28 EHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLS------ 99 (429)
Q Consensus 28 ~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g------ 99 (429)
.+....+..+..+ ..++..|+.+|-.|||+-|+..|+-+..-.-++.. ..+.++-..|.|++.++..
T Consensus 196 ~~~~~~Y~~~S~E-----~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~ 270 (414)
T PF12739_consen 196 NPSQNYYSADSPE-----AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIR 270 (414)
T ss_pred CcccCccCCCChH-----HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccc
Confidence 3444555556555 56889999999999999999999998885544332 2345556666676666211
Q ss_pred --C----HHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 100 --E----YPRAIHECNLA----LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 100 --~----y~eAi~~~~~A----LeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
. ++.|...|..+ .....--.++.+..+.++..++.+.+|...+-+....
T Consensus 271 ~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 271 KDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 23333344432 1111233556777788888999988887777666654
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.01 E-value=8.9 Score=39.62 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=61.5
Q ss_pred HHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------CC---------------CCHHHH
Q 014213 72 LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV--------------TP---------------LYSKAL 122 (429)
Q Consensus 72 Lel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel--------------dP---------------~~~kAl 122 (429)
|...|.+.+ .+..++..+.+. |++..|...+++||=. ++ .+..|+
T Consensus 33 l~~~PyHid----tLlqls~v~~~~--gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 33 LQKNPYHID----TLLQLSEVYRQQ--GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 455676664 677788888888 9999998888888621 11 124478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMA 155 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a 155 (429)
++....+...|.+.-|++.++-.++++|. ++-.
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 88999999999999999999999999998 6643
No 338
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.92 E-value=6.9 Score=38.07 Aligned_cols=109 Identities=19% Similarity=0.054 Sum_probs=62.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCCcc----H----HHHHHHHHHHHHHcCCCC-HHHHH-HHHHHHHH-hC-CCCHHHHH
Q 014213 56 FQKRDHGGALLKYEKALKLLPRNHID----V----SYLRSNMAACYMQMGLSE-YPRAI-HECNLALE-VT-PLYSKALL 123 (429)
Q Consensus 56 f~~gdyeeAl~~Y~kALel~P~~~~~----~----a~l~~nrA~~y~kl~~g~-y~eAi-~~~~~ALe-ld-P~~~kAl~ 123 (429)
|.-|+|+.|+....-||+..-.-++. . +--...-+...... |. ++-.. ..+..... .+ |+-+.|-+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~a--g~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASA--GESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 46788999999999999987443321 1 11112222223333 33 11111 11111111 11 56566655
Q ss_pred HH--HHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 124 KR--ARCYE---------ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 124 ~r--A~ay~---------~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
.+ |..+. ..+++..|+..+++|+.++|+ ..+...+.++...+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 54 44442 345788999999999999975 456666777777664
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.79 E-value=12 Score=34.24 Aligned_cols=81 Identities=9% Similarity=-0.051 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 88 nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
....+-+.. .+..++.......--+-|+....-.--|..+...|+|.+|+..|+....-.|..+-+...++.|...++
T Consensus 15 ~~~~~aL~~--~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 15 EVLMYALRS--ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 333444445 888888888887778899999999999999999999999999999999999999999999999999997
Q ss_pred hhc
Q 014213 168 KRG 170 (429)
Q Consensus 168 e~~ 170 (429)
+..
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 644
No 340
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=83.41 E-value=2.3 Score=43.24 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=70.2
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 014213 67 KYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK-RARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 67 ~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~-rA~ay~~LG~~deAl~~~~kA 145 (429)
.|.++-...|+++. +|...++...+. +.|.+.-..|.+++...|.++..|.. -+.-|...++++.+...|.++
T Consensus 95 ~~~R~tnkff~D~k----~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 95 ELYRSTNKFFNDPK----IWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKG 168 (435)
T ss_pred eeehhhhcCCCCcH----HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence 34444455566663 666555444444 88999999999999999999998877 566788899999999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 014213 146 LNKEPKNIMAAEIAERV 162 (429)
Q Consensus 146 L~l~P~n~~a~~~La~l 162 (429)
|.++|.++..|...-+.
T Consensus 169 lR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 169 LRMNSRSPRIWIEYFRM 185 (435)
T ss_pred hccCCCCchHHHHHHHH
Confidence 99999999887765553
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.28 E-value=1.5 Score=27.50 Aligned_cols=24 Identities=33% Similarity=0.146 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 014213 120 KALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~ 143 (429)
.+++.+|.+|..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666666666777666666554
No 342
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.63 E-value=3.4 Score=31.95 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
++.|..+...|..+=+.|+|++|+.+|.+|++..
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999999988864
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.45 E-value=8.5 Score=41.38 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=78.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213 53 NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL 132 (429)
Q Consensus 53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L 132 (429)
...+..||.-.|-.....+|+-.|.++. .-..++..+..+ |+|+.|.++..-+-.+-..-.+++.-+-..+..+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~----~i~l~~~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPV----LIQLRSVIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCch----hhHHHHHHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence 4456789999999999999999999885 445567788888 9999999988777666566667777788889999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 133 NRLDLAFRDVTTVLNKEPKNIMAA 156 (429)
Q Consensus 133 G~~deAl~~~~kAL~l~P~n~~a~ 156 (429)
|++++|+......|.-+-.++++.
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhhe
Confidence 999999998888887655555543
No 344
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.93 E-value=3.4 Score=32.73 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
++..|..+...|...=..|+|++|+.+|..|++..
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999888764
No 345
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=81.88 E-value=0.44 Score=45.57 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred CceeEEEEeCC-ce-EEEEccCCccHHHHHHHHHhhC---CC------------------CCceEEEEECCCCCEEEecC
Q 014213 260 PKKTVKLVFGE-DI-RVAQLPLNSSLLQLREVISDRF---PS------------------CRAVLIKYRDEEGDLVTITT 316 (429)
Q Consensus 260 ~~~~vK~~~~~-Di-R~~~i~~~~~~~~L~~~v~~kf---~~------------------~~~~~iky~DedgDliti~~ 316 (429)
....|||+... .| |.|=|..--+|.+|...+.+-| .. ...+.|-|.|.||||..++|
T Consensus 108 ~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD 187 (215)
T PF02309_consen 108 SRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGD 187 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecC
Confidence 35778888755 54 4444666789999999999999 21 12478999999999999998
Q ss_pred h
Q 014213 317 D 317 (429)
Q Consensus 317 ~ 317 (429)
.
T Consensus 188 ~ 188 (215)
T PF02309_consen 188 V 188 (215)
T ss_dssp -
T ss_pred C
Confidence 6
No 346
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=81.78 E-value=4.2 Score=47.92 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR----NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--- 115 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~----~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--- 115 (429)
..+....+.|......+.+.+|.+ ..+++.+..+ -+.+.+.+|..++..|.++ +++++|+..+.+|.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~--~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL--GDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--cchHHHHHhcccceeeechh
Confidence 556778889999999999998888 6666665542 1224567899999999999 99999999999887553
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhcccc
Q 014213 116 -----PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK--------EPKNIMAAEIAERVKKELEKRGLRV 173 (429)
Q Consensus 116 -----P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l--------~P~n~~a~~~La~l~~~l~e~~~a~ 173 (429)
|+...+|.+++...........|+..+.+++.+ .|.-.....+++.+...+++...++
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence 556778999999889999999999999988876 3544445455666655555444443
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.75 E-value=5.3 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 123 LKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 123 ~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677888888888888888888774
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.18 E-value=9.9 Score=40.01 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRN-----HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~-----~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
-.-..+.-.|||..|+...+. |+++... +.-..++++..|.|||.| ++|.+|+..+...|-.--+....+..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMl--rRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLML--RRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344566678999999987654 3333221 111235778899999999 99999999999887533222222333
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCC
Q 014213 125 RARCYEALN-RLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 125 rA~ay~~LG-~~deAl~~~~kAL~l~P~ 151 (429)
+..-|-.+. ..+.....+--++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 333333322 334455555556677774
No 349
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.08 E-value=2.6 Score=44.22 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH-------H-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 87 SNMAACYMQMGLSEYPRAIHECNLA-------L-EVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 87 ~nrA~~y~kl~~g~y~eAi~~~~~A-------L-eldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
..+...|.-+ |+|..|+...+-. + .+-+.++..+|..|.||..+++|.+|++.|...|..
T Consensus 126 igLlRvh~LL--GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLL--GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhc--cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666 9999999876532 1 123457788999999999999999999999988753
No 350
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.53 E-value=33 Score=35.64 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
.+.....++..+|+.++|..|...+...+...|.+.. ...+..++.+|..=-.-+|.+|...++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999986444332 34566666666653336899999999877653
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=79.00 E-value=14 Score=42.17 Aligned_cols=100 Identities=22% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCCccH---------HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKAL-------KLLPRNHIDV---------SYLRSNMAACYMQMGLSEYPRAIHECNL 110 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kAL-------el~P~~~~~~---------a~l~~nrA~~y~kl~~g~y~eAi~~~~~ 110 (429)
.+.+.+..+-.++|.+.|+++|+++- ++...++..+ ..+|.--|..+-.. |+.+.|+..|..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~--GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV--GEMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 35566666667778888888887641 1111121110 24555556555555 999999999988
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 111 ALEV---------------------TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 111 ALel---------------------dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
|-.. ...+..|-|.+|+-|+..|++.+|+.+|.+|-..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7533 2456678899999999999999999999887654
No 352
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=13 Score=37.08 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213 60 DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYP-RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138 (429)
Q Consensus 60 dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~-eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA 138 (429)
+..+-++..+++++-+|.+.- +|.-|-...-.+ |++. +-+..+..+|..+..+.-||..|--|+...+.|+.-
T Consensus 93 dL~~El~~l~eI~e~npKNYQ----vWHHRr~ive~l--~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQ----VWHHRRVIVELL--GDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHHHHHHhCccchh----HHHHHHHHHHHh--cCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 356778889999999999884 777777776667 8888 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHH
Q 014213 139 FRDVTTVLNKEPKNIMAAEI 158 (429)
Q Consensus 139 l~~~~kAL~l~P~n~~a~~~ 158 (429)
+.+....|+.+--|.+|+..
T Consensus 167 L~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHHHHHHhhhccchhhe
Confidence 99999999988766666654
No 353
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=78.32 E-value=16 Score=37.60 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHH
Q 014213 61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP---LYSKALLKRARCYEALNRLDL 137 (429)
Q Consensus 61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP---~~~kAl~~rA~ay~~LG~~de 137 (429)
|..-..+|+-...+.| ++. +-.|++.+..+. .=...++...+.. .-+| .|.-.+--+|..+..+|+.++
T Consensus 312 W~~I~aLYdaL~~~ap-SPv----V~LNRAVAla~~--~Gp~agLa~ve~L-~~~~~L~gy~~~h~~RadlL~rLgr~~e 383 (415)
T COG4941 312 WPAIDALYDALEQAAP-SPV----VTLNRAVALAMR--EGPAAGLAMVEAL-LARPRLDGYHLYHAARADLLARLGRVEE 383 (415)
T ss_pred hHHHHHHHHHHHHhCC-CCe----EeehHHHHHHHh--hhHHhHHHHHHHh-hcccccccccccHHHHHHHHHHhCChHH
Confidence 3333344544444444 332 456777776554 3344455544433 3332 466677888999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 138 AFRDVTTVLNKEPKNIMAAEIAERVK 163 (429)
Q Consensus 138 Al~~~~kAL~l~P~n~~a~~~La~l~ 163 (429)
|-..|++|+.+.++..+......++-
T Consensus 384 Ar~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 384 ARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999998888777666654
No 354
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.55 E-value=5.9 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
..|..+..++..+=+.|+|.+|+.+|++||++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777776654
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.29 E-value=4 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEV 114 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALel 114 (429)
+|..+|.+-+.. ++|++|+.+|.++|++
T Consensus 3 v~~~Lgeisle~--e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLEN--ENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHh--ccHHHHHHHHHHHHHH
Confidence 344444444444 5555555555555443
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.57 E-value=21 Score=29.07 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---ALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 88 nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---Al~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
-.|.-++.. .+..+|+..++.+|+..++... ++-.+..+|...|+|.+++.+...=+.+
T Consensus 11 e~GlkLY~~--~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQ--NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhcc--chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555 7889999999999998877544 5556678999999999999886655443
No 357
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.47 E-value=16 Score=35.48 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHc
Q 014213 61 HGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLY----SKALLKRARCYEAL 132 (429)
Q Consensus 61 yeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~----~kAl~~rA~ay~~L 132 (429)
-...+.++.+|++....... ....+...+|.-|+.+ |+|++|+..++.+...- ..+ ...+..+..|+..+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~--g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL--GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34566777777766554332 2345677899999999 99999999999996542 222 34677888999999
Q ss_pred CCHHHHHHHHHHHH
Q 014213 133 NRLDLAFRDVTTVL 146 (429)
Q Consensus 133 G~~deAl~~~~kAL 146 (429)
|+.+..+...-+.+
T Consensus 232 ~~~~~~l~~~leLl 245 (247)
T PF11817_consen 232 GDVEDYLTTSLELL 245 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999887766554
No 358
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.12 E-value=35 Score=35.34 Aligned_cols=116 Identities=17% Similarity=0.072 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH---HHhC-------CCCCc-------------------cHHHHHHHHHHHHHHcCCC
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKA---LKLL-------PRNHI-------------------DVSYLRSNMAACYMQMGLS 99 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kA---Lel~-------P~~~~-------------------~~a~l~~nrA~~y~kl~~g 99 (429)
.+.|..++..|+|.+....++.| .+.. |.... ++..++...|.-||.. .
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~--n 139 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLL--N 139 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHh--c
Confidence 36788999999998876655443 2222 11000 2356778889999999 9
Q ss_pred CHHHHHHHHHHHHHh------------------------CCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHH
Q 014213 100 EYPRAIHECNLALEV------------------------TPLYSK-----------ALLKRARCYEALNRLDLAFRDVTT 144 (429)
Q Consensus 100 ~y~eAi~~~~~ALel------------------------dP~~~k-----------Al~~rA~ay~~LG~~deAl~~~~k 144 (429)
+++.|+-++++|++. +|+..+ .|.+++.-|..-.++-.+-.+|.+
T Consensus 140 D~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~ 219 (449)
T COG3014 140 DSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLS 219 (449)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999998754 233221 466778888888888899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHH
Q 014213 145 VLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 145 AL~l~P~n~~a~~~La~l~~~l~ 167 (429)
+|...|++ +.......+.+.++
T Consensus 220 ~lf~a~n~-dv~kg~~~~~e~~g 241 (449)
T COG3014 220 GLFYALNG-DVNKGLGYLNEAYG 241 (449)
T ss_pred HHhcccCc-cHhHHHHHHHHHhc
Confidence 99999988 77888777776664
No 359
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.89 E-value=7 Score=30.70 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
++..|..+...|..+=..|+|++|+.+|..|++..
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35677778888888888899999999999888754
No 360
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=75.70 E-value=7.1 Score=30.67 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
++..|..+...|..+=..|+|++|+.+|..|++..
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45677788888888888899999999988888754
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.04 E-value=38 Score=34.22 Aligned_cols=82 Identities=13% Similarity=-0.066 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHcCCHHH
Q 014213 61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY---EALNRLDL 137 (429)
Q Consensus 61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay---~~LG~~de 137 (429)
.+.-+..|++||+.+|.+.. ++..+-.++.++ .+-+.....++.++..+|.+...|..+-... ...-.+..
T Consensus 47 ~E~klsilerAL~~np~~~~----L~l~~l~~~~~~--~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER----LLLGYLEEGEKV--WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHH
Confidence 56778899999999997664 555555566677 7889999999999999999887765543322 22335778
Q ss_pred HHHHHHHHHHh
Q 014213 138 AFRDVTTVLNK 148 (429)
Q Consensus 138 Al~~~~kAL~l 148 (429)
....|.++|..
T Consensus 121 ~~~~y~~~l~~ 131 (321)
T PF08424_consen 121 VRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 362
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.00 E-value=10 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 014213 47 ELKEEGNKLFQKRDHGGALLK--YEKALKLLPR 77 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~--Y~kALel~P~ 77 (429)
.+...|-.+++.|+|++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 355567777777777777777 3366666554
No 363
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=74.92 E-value=6.3 Score=31.54 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
++..|..+..+|...=..|+|++|+.+|..+|++.
T Consensus 2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46777888888888889999999999999998864
No 364
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.54 E-value=7.7 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
...|..+..++..+=+.|+|++|+.+|..||++.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3567778888888889999999999999998864
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.97 E-value=10 Score=38.29 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
+.+.+...+..|...|.+.+|++..++++.++|-+.+.+..+.+++..+++
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 445566666777777777777777777777777777777777777766665
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.96 E-value=24 Score=33.71 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL----YSKALLKRARCYEALNRLDLA 138 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~----~~kAl~~rA~ay~~LG~~deA 138 (429)
+.+.+|..|.+ .+.++|+..+.++|++.+. ++..+..+|.+|..+|+++.|
T Consensus 143 lq~aLAtyY~k---rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 143 LQYALATYYTK---RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33444444443 2444444444444444321 244444444444444444444
No 367
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.52 E-value=39 Score=38.83 Aligned_cols=89 Identities=15% Similarity=0.043 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHhCCCCHH----------HHHHHHHHHHHcCCHHHHHHHHH
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLA----------LEVTPLYSK----------ALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~A----------LeldP~~~k----------Al~~rA~ay~~LG~~deAl~~~~ 143 (429)
..|+|.|.-+-.- ++.+.|+.+|+++ |.-+|...+ .|.--|.-++..|+.+.|+.+|.
T Consensus 859 ~Tyy~yA~~Lear--~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 859 NTYYNYAKYLEAR--RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhHHHHHHHHHhh--ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 4556666655555 8899999998874 233443333 33334778889999999999986
Q ss_pred HHHH---------------------hCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 144 TVLN---------------------KEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 144 kAL~---------------------l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
.|-. -+..|..+-..+++.+...++-..|+.
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 6533 245667777778887777776554443
No 368
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=73.42 E-value=26 Score=36.52 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEV----TPLYSKALLKRARCYEA---LNRLDLAFRDVTT-VLNKEPKNIMAA 156 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----dP~~~kAl~~rA~ay~~---LG~~deAl~~~~k-AL~l~P~n~~a~ 156 (429)
+..++=.+|-.. .+|+..+...+..-.+ -++....-+..|.|+.. .|+.+.|+..+.. +...++.+++.+
T Consensus 143 iv~~lllSyRdi--qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 143 IVINLLLSYRDI--QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred HHHHHHHHhhhh--hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445666778888 8999988888776555 34556667788889988 9999999999999 445677889999
Q ss_pred HHHHHHHHHHH
Q 014213 157 EIAERVKKELE 167 (429)
Q Consensus 157 ~~La~l~~~l~ 167 (429)
..++++++.+-
T Consensus 221 gL~GRIyKD~~ 231 (374)
T PF13281_consen 221 GLLGRIYKDLF 231 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999998883
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.28 E-value=44 Score=38.40 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----TPLYS 119 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----dP~~~ 119 (429)
|+..-..|..+...|+++.|+...+.++...|.+.. .+..++++.|.+++-. |+|.+|+.....+.++ +.-+.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~--G~~~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR--GELTQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh--chHHHHHHHHHHHHHHHHHcccHHH
Confidence 334445688889999999999999999999997654 3567889999999998 9999999999998887 33333
Q ss_pred --HHHHHHHHHHHHcCC--HHHHHHHHHH
Q 014213 120 --KALLKRARCYEALNR--LDLAFRDVTT 144 (429)
Q Consensus 120 --kAl~~rA~ay~~LG~--~deAl~~~~k 144 (429)
.+.+-.+.++.+.|+ +.+.+..|..
T Consensus 536 ~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 536 ALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345666889999993 4444444443
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.14 E-value=16 Score=36.57 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE 113 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe 113 (429)
...+......+...++++.++..+++-+.++|.+.. +|..+-..|++. |+...||..|.+.-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~--g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVN--GRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHc--CCchHHHHHHHHHHH
Confidence 344666788899999999999999999999999886 888888999999 999999998877644
No 371
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=73.11 E-value=8.6 Score=31.18 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=36.9
Q ss_pred ceeEEEEeCC-ceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHH
Q 014213 261 KKTVKLVFGE-DIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEEL 320 (429)
Q Consensus 261 ~~~vK~~~~~-DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl 320 (429)
.+++||.-.+ -+|+-++- .|+.||+++..++|... ..+.| +.++||..| ++||.
T Consensus 2 ~kp~kv~~~~r~~k~Gv~A--~sL~eL~~K~~~~l~~~~~~~~l-vL~eDGT~V---ddEey 57 (78)
T PF02017_consen 2 PKPFKVRNHDRSVKKGVAA--SSLEELLEKACDKLQLPEEPVRL-VLEEDGTEV---DDEEY 57 (78)
T ss_dssp -EEEEEEETTSSCEEEEEE--SSHHHHHHHHHHHHT-SSSTCEE-EETTTTCBE---SSCHH
T ss_pred CCcEEEecCCCCceEeEEc--CCHHHHHHHHHHHhCCCCcCcEE-EEeCCCcEE---ccHHH
Confidence 4667777433 44544433 58999999999999655 66777 778999665 45554
No 372
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.04 E-value=22 Score=34.55 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRN--HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL 112 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL 112 (429)
+.|..||..|+|+.|+..|+.+......+ ......++..+..|+.++ |+.+..+..+-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~--~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL--GDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 78999999999999999999997654432 223456778899999999 99999888775543
No 373
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.54 E-value=8 Score=31.03 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
..|..+...|..+=+.|+|++|+.+|.+||+..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888887754
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.50 E-value=7 Score=31.40 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP 76 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P 76 (429)
+.+|..+...|...=..|+|++|+.+|..||++.-
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Confidence 45677788888888889999999999999998653
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.18 E-value=7 Score=39.50 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
++.-.|..|... |.+.+|+..+++++.++|.+...+..+-..|..+|+--.|...|++.
T Consensus 281 llgkva~~yle~--g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEA--GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHc--CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445556777777 99999999999999999999999999999999999988888887754
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.92 E-value=9.4 Score=34.30 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM 96 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl 96 (429)
..+...+..++..|+|.-|+.+.+.++..+|++.. +..-++.+|.++
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~----ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE----ARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHH
Confidence 45566666666777777777777777777776654 444455555554
No 377
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.73 E-value=8.8 Score=30.61 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
+..|..+..+|...=..|+|++|+.+|..||+..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4567788888888888999999999999888864
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.05 E-value=1.3e+02 Score=33.17 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----
Q 014213 45 SQELKEEGNKLF-QKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---- 117 (429)
Q Consensus 45 A~~lk~~Gn~lf-~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---- 117 (429)
|......|..|+ ...+++.|....++++.+...+.- ....+.+-++.+|.+. +... |+..++++|+.--.
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~--~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT--NPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc--CHHH-HHHHHHHHHHHHhccCch
Confidence 455677888887 578899999999999999865322 2344556678888887 4444 99999999987544
Q ss_pred CHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 014213 118 YSKALLKRARC-YE-ALNRLDLAFRDVTTVLNKE--PKNIMAAEIAERVK 163 (429)
Q Consensus 118 ~~kAl~~rA~a-y~-~LG~~deAl~~~~kAL~l~--P~n~~a~~~La~l~ 163 (429)
.+.-.+++-.+ +. ..+++..|++.++....+. ++++.+...+.-+.
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 23333444322 22 2379999999999998876 46665544444333
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=70.98 E-value=20 Score=38.03 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--------CCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTP--------LYS----------KALLKRARCYEALNRLDLAFRDVTTVL 146 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--------~~~----------kAl~~rA~ay~~LG~~deAl~~~~kAL 146 (429)
++-.-+.||- . +.|..|+--|..||++.. ..+ ..--.+..||..+++.+.|+....+.+
T Consensus 179 AL~das~~yr-q--k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 179 ALKDASSCYR-Q--KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHh-h--HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 3333344444 4 788888888888887742 111 123467899999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213 147 NKEPKNIMAAEIAERVKKELEKRGLRVN 174 (429)
Q Consensus 147 ~l~P~n~~a~~~La~l~~~l~e~~~a~~ 174 (429)
.++|....-+...+.+...|.++..|..
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888778888888877655544
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.76 E-value=67 Score=31.21 Aligned_cols=109 Identities=16% Similarity=-0.004 Sum_probs=72.5
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCC-H
Q 014213 47 ELKEEGNKLFQ----KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLY-S 119 (429)
Q Consensus 47 ~lk~~Gn~lf~----~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--~g~y~eAi~~~~~ALeldP~~-~ 119 (429)
.....|..|.. ..++..|+..|..+.+ ..++ ...+++|..|..-. ..++.+|..+|.+|.+..-.. .
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~----~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~ 148 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLA----EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAA 148 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccH----HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHH
Confidence 44444444443 3457888888884444 3333 36778888887721 148999999999998876443 3
Q ss_pred HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 120 KALLKRARCYEAL----N---RLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163 (429)
Q Consensus 120 kAl~~rA~ay~~L----G---~~deAl~~~~kAL~l~P~n~~a~~~La~l~ 163 (429)
.+.+++|.+|..- + +...|+..|.++-... +..+...++.++
T Consensus 149 ~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 149 LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 5588888888764 2 2337888888888775 666777777554
No 381
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=70.25 E-value=87 Score=32.83 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECN 109 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~ 109 (429)
..-...+..+|+.++|..|...|.+++...+.... ....++.+++.+|+.--.-+|++|...++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34445677999999999999999999988654222 23456677777776643368899998888
No 382
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.67 E-value=6 Score=24.65 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECN 109 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~ 109 (429)
+++++|.+|..+ |++++|...++
T Consensus 3 a~~~la~~~~~~--G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQ--GDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHh
Confidence 456677777777 77777766554
No 383
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.36 E-value=53 Score=30.33 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 81 DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 81 ~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
....++..+|.-|.+. |+++.|+..|.++.+.... -...+++.-.+....++|.....++.+|-.+
T Consensus 34 sir~~~~~l~~~~~~~--Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 34 SIRMALEDLADHYCKI--GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456888999999999 9999999999998886543 2557788889999999999999999999877
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.18 E-value=28 Score=36.78 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------C-CC
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-------P-LY 118 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-------P-~~ 118 (429)
.+.+.|.-|+.-|+++.|+.+|.++-.+.-. .......+.|.-.+-.-+ ++|......-.+|.+-- + -.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~--~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYM--GNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhh--cchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 3557788899999999999999997666543 323445566666666667 89998888888776541 0 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014213 119 SKALLKRARCYEALNRLDLAFRDVTTVL 146 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL 146 (429)
++..-.-|.+...+++|..|..+|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2344445677777788888887775443
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.25 E-value=45 Score=32.67 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213 52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120 (429)
Q Consensus 52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k 120 (429)
...+++.+...+|+.....-++..|.+.. ++..+-..|.-+ |+|++|+..|+.+-++.|.+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~----~RhflfqLlcva--Gdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAG----GRHFLFQLLCVA--GDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcccc----chhHHHHHHhhc--chHHHHHHHHHHHhhcCcccch
Confidence 34677788888888888888888888775 333344445556 8888888888888888887644
No 386
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=67.21 E-value=78 Score=35.48 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc---------cH------HHHHHHHHHHHHHcCCCCHHHHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI---------DV------SYLRSNMAACYMQMGLSEYPRAIHE 107 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~---------~~------a~l~~nrA~~y~kl~~g~y~eAi~~ 107 (429)
+.|+.|.+-|..-+...+++.|+.+.+.|+.. |..+. .. ..+|+..+...-.+ |-++.....
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~--gtfestk~v 499 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL--GTFESTKAV 499 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh--ccHHHHHHH
Confidence 45677888888888999999999999999875 43321 11 23455555555556 888888999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q 014213 108 CNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKE--PKNIMAAE 157 (429)
Q Consensus 108 ~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~--P~n~~a~~ 157 (429)
|++.|++--.-+....+.|.-+..-.-+++|.+.|++.+.|- |+--+.|.
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 999999998889999999999999999999999999999984 44444444
No 387
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=66.90 E-value=16 Score=38.63 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc----cH-------HHHHHHHHHHHHHcCCCC-----HHHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI----DV-------SYLRSNMAACYMQMGLSE-----YPRAIHE 107 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~----~~-------a~l~~nrA~~y~kl~~g~-----y~eAi~~ 107 (429)
......+.|..+|..|+|.+|+..|..+|...|-... +. ..+.-.+-.+-+.+.... .++....
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 3344556899999999999999999999998653221 11 112222222222221011 1222222
Q ss_pred HHHH-----HHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014213 108 CNLA-----LEVTPLYSKALLKRAR-CYEALNRLDLAFRDVTTVLNKEPKNIMA 155 (429)
Q Consensus 108 ~~~A-----LeldP~~~kAl~~rA~-ay~~LG~~deAl~~~~kAL~l~P~n~~a 155 (429)
++.| ..+.|.|...-++.|. ..+..++|.-|-...++.|++.|....+
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 3332 2344555544455554 4467889999999999999999987643
No 388
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=66.65 E-value=37 Score=40.48 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP----RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--- 115 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P----~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--- 115 (429)
..+..|+..+-.+...+++++|+..-.+|.-+.. .++......|.|++...+.. +....|+..+.+|+.+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~--~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV--KNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc--cCccchhhhHHHHHHhhccc
Confidence 3455677788889999999999998888876543 24445567888999888888 88999999999998763
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHHHhhcc
Q 014213 116 -----PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKE-----P---KNIMAAEIAERVKKELEKRGL 171 (429)
Q Consensus 116 -----P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~-----P---~n~~a~~~La~l~~~l~e~~~ 171 (429)
|.-.-...+++..+..+++++.|+.+.+.|++.+ | .+......++++...+++-..
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~ 1117 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRN 1117 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHH
Confidence 3333345678888899999999999999999863 2 234455666666666654333
No 389
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=66.41 E-value=77 Score=38.04 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcC-----------------------
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMG----------------------- 97 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~----------------------- 97 (429)
......+..|+.++..|+|.+|+..|.+|+.+.-..... .+.++-.++.|.+-+.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 456678889999999999999999999999987543321 2333333333322211
Q ss_pred --------------------------------------CCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcC
Q 014213 98 --------------------------------------LSEYPRAIHECNLALEV----TPL--YSKALLKRARCYEALN 133 (429)
Q Consensus 98 --------------------------------------~g~y~eAi~~~~~ALel----dP~--~~kAl~~rA~ay~~LG 133 (429)
+..+++|+..|.++... .|. +..+.++.+..+....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 12467788888888632 233 5678889998888888
Q ss_pred --------------------CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHH
Q 014213 134 --------------------RLDLAFRDVTTVLNKEPK------NIMAAEIAERVKKELE 167 (429)
Q Consensus 134 --------------------~~deAl~~~~kAL~l~P~------n~~a~~~La~l~~~l~ 167 (429)
.-.++...+.+|+.+... ....+..++.++..++
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG 459 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLG 459 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcc
Confidence 788899999999876543 1346667788888876
No 390
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=66.34 E-value=63 Score=32.38 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=78.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSE----YPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~----y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
.-..+++.++|++--..|.+...-... +.+.. +.....+.+...+ .. ........+.-++..|+..-+++.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~--~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La 82 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDM--DSVVDAWQARLAVLKAWVAACPKSYHAHLA 82 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCc--chhhhHHHhHHHHHHHHHHHCCCChHHHHH
Confidence 345788899999988888888765443 22211 1222122112222 11 123556666678899999998888
Q ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 125 RARCYEALN----------------------RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 125 rA~ay~~LG----------------------~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
+|..+.... ..+.|..++.+|+.++|....+...+-++-..+++..
T Consensus 83 ~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 83 MGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 887766432 1567899999999999999999999888888777644
No 391
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.07 E-value=1e+02 Score=35.71 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCccH--HHHHHHHHHHHHH----------cCCCCHHHH-
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR----NHIDV--SYLRSNMAACYMQ----------MGLSEYPRA- 104 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~----~~~~~--a~l~~nrA~~y~k----------l~~g~y~eA- 104 (429)
+.....-.++|..+...|.|.+|+++|..+|-..|- +..+. +.-+...+.-|.- |.-...+++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 455566778999999999999999999999988773 22111 1222222222211 111234444
Q ss_pred -HHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 105 -IHECNLALEVTPLYSKALLKR-ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI 158 (429)
Q Consensus 105 -i~~~~~ALeldP~~~kAl~~r-A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~ 158 (429)
++.|-.-..+.|-+.-.-++. -.+++.++++..|-....+.|++.|..+.|...
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 333333345667664444444 458899999999999999999999987765433
No 392
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=65.85 E-value=29 Score=37.22 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ 110 (429)
..+...|.-+|..|+|..+..+-....+.+| ++ .+|.-+|.|.+.. .+|.+|...+..
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~----~~~RLlGl~l~e~--k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP----QAYRLLGLCLMEN--KRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH----HHHHHHHHHHHHH--hhHHHHHHHHHh
Confidence 3456678889999999999999999999999 55 3888899999998 999999988744
No 393
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.75 E-value=34 Score=37.01 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=51.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
+.+.|.+--..|.++|...|+++. +|..-|.-.+..+ -+.+.|.+.+.++|+.+|+.++.|
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~d----LWI~aA~wefe~n-~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPD----LWIYAAKWEFEIN-LNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCch----hHHhhhhhHHhhc-cchHHHHHHHHHHhhcCCCChHHH
Confidence 445588888999999999999996 8887777777772 239999999999999999998754
No 394
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=65.48 E-value=5 Score=41.30 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
+.+...++.+.|..|+..-..+++.++.... +|+.++..|+.+ .++++|+.++..+....|++....-.+..+-
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk----a~~Rr~~~~~~~--~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTK----AHYRRGQAYKLL--KNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCc----HHHHHHhHHHhh--hchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 3445555666677777766677776665554 889999999999 9999999999999999999877555444443
Q ss_pred H
Q 014213 130 E 130 (429)
Q Consensus 130 ~ 130 (429)
.
T Consensus 354 ~ 354 (372)
T KOG0546|consen 354 Q 354 (372)
T ss_pred h
Confidence 3
No 395
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.40 E-value=16 Score=34.81 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi 105 (429)
+-....|. ||.+.|.+.|+..|.++|++.+.+..--..++..+|..|+++ ++|+.|-
T Consensus 142 elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~--~~~e~AY 198 (203)
T PF11207_consen 142 ELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL--KNYEQAY 198 (203)
T ss_pred HHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh--cchhhhh
Confidence 33444444 556899999999999999998766322235778899999999 9999874
No 396
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=65.23 E-value=39 Score=29.27 Aligned_cols=72 Identities=8% Similarity=-0.040 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH
Q 014213 89 MAACYMQMGLSEYPRAIHECNLALEVTPLYSK---ALLKRARCYEALNR-----------LDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 89 rA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---Al~~rA~ay~~LG~-----------~deAl~~~~kAL~l~P~n~~ 154 (429)
+|.-+++- |++-+|+...+..+...++... .+..-|.++..+.. +-.|++.|.++..+.|..+.
T Consensus 2 ~A~~~~~r--GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFAR--GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHc--cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 35556666 9999999999999999887653 34444777766653 34699999999999999877
Q ss_pred HHHHHHHH
Q 014213 155 AAEIAERV 162 (429)
Q Consensus 155 a~~~La~l 162 (429)
.+..++.-
T Consensus 80 ~L~~la~~ 87 (111)
T PF04781_consen 80 SLFELASQ 87 (111)
T ss_pred HHHHHHHH
Confidence 66666654
No 397
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.93 E-value=1.1e+02 Score=33.71 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-------c-c--------------HHHHHHHHHHHHHHcCCCCHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH-------I-D--------------VSYLRSNMAACYMQMGLSEYPR 103 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~-------~-~--------------~a~l~~nrA~~y~kl~~g~y~e 103 (429)
..+.--|..+...+..+.|..+++++++...+.- . . ...++...+.+.+-+ ++|..
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~--~~~~~ 379 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR--GDWSK 379 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC--cCHHH
Confidence 3455567888888888788888888877543211 0 0 134566677777777 99999
Q ss_pred HHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213 104 AIHECNLALEVT---PL------YSKALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 104 Ai~~~~~ALeld---P~------~~kAl~~rA~ay~~LG~~deAl~~~~ 143 (429)
|......+.... |. .+..+|-.|..+...|+.+.|+..|.
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999888777653 22 46678999999999999999999998
No 398
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=63.63 E-value=22 Score=26.99 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=36.5
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCC-CCceEEEEEC
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPS-CRAVLIKYRD 306 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~D 306 (429)
++|.|.+++.+.-+.++.+.+..+|.+.|..+++. ....+|.|..
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 46 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKG 46 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCC
Confidence 36777778888888899999999999999999853 3448888874
No 399
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.20 E-value=75 Score=34.02 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=71.1
Q ss_pred CchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CCccHHHHHHHHHHHHHHcC----CCCHHH
Q 014213 35 DKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR-------NHIDVSYLRSNMAACYMQMG----LSEYPR 103 (429)
Q Consensus 35 d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~-------~~~~~a~l~~nrA~~y~kl~----~g~y~e 103 (429)
++.+...+=++.-+.+.|..++....|.+|+..+-.|=+.... .....+.+-..+-.||++++ +-+-+.
T Consensus 153 ppsE~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~ 232 (568)
T KOG2561|consen 153 PPSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEV 232 (568)
T ss_pred ChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHH
Confidence 3445556678888999999999999999999877666444321 00012245555677888873 112222
Q ss_pred HHHHHHHHHHh------------C-CCC-HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 104 AIHECNLALEV------------T-PLY-SKAL-----LKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 104 Ai~~~~~ALel------------d-P~~-~kAl-----~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
-+.-|++.+.. . +.. -+|+ +.-|...+..|+-++|.++++.|.+.
T Consensus 233 RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 233 RLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 33333333322 1 222 2233 33388999999999999999988753
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.53 E-value=1.2e+02 Score=31.67 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---------------
Q 014213 51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--------------- 115 (429)
Q Consensus 51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--------------- 115 (429)
.-...++.++..+-+..-..||+++|.-.. +|..+|.--. .-.-+|...+.+||..-
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~----AyvLLAEEEa----~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECAT----AYVLLAEEEA----TTIVDAERLFKQALKAGETIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhh----HHHhhhhhhh----hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 345667788888888889999999986553 5554443221 12344555555555331
Q ss_pred --------CCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 116 --------PLYSKAL--LKRARCYEALNRLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 116 --------P~~~kAl--~~rA~ay~~LG~~deAl~~~~kAL~l~P 150 (429)
..++-.| .++|.|-..+|+..+|++.++...+--|
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1223334 4669999999999999999998887766
No 401
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=60.78 E-value=29 Score=26.66 Aligned_cols=59 Identities=22% Similarity=0.094 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHE 107 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~ 107 (429)
...|..+|..|+|=+|-+.++.+-...+......-..+.++|.++.+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45788999999999999999988776665433333444555555444444888887654
No 402
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=60.71 E-value=30 Score=26.44 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=34.8
Q ss_pred eeEEEEeC-CceEEEEccCCccHHHHHHHHHhhCCC-C-CceEEEEECCCCCEEE
Q 014213 262 KTVKLVFG-EDIRVAQLPLNSSLLQLREVISDRFPS-C-RAVLIKYRDEEGDLVT 313 (429)
Q Consensus 262 ~~vK~~~~-~DiR~~~i~~~~~~~~L~~~v~~kf~~-~-~~~~iky~DedgDlit 313 (429)
++|+|... ...-.+.|..+.++..|++.++++.+. . ..+++.| ||+.+.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L~ 52 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKRLD 52 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEEcC
Confidence 35666653 335666789999999999999999943 3 5798888 454443
No 403
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.17 E-value=17 Score=39.15 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213 52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA 131 (429)
Q Consensus 52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~ 131 (429)
+...-..|+|++|+.....+=........ +...+-..+..+ +++++|...+...|.-.-..+..+.-.|-.-.+
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~----~~~~~~r~~~~l--~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~ 403 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDS----TLRCRLRSLHGL--ARWREALSTAEMMLSNEIEDEEVLTVAAGSADA 403 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCch----HHHHHHHhhhch--hhHHHHHHHHHHHhccccCChhheeeecccHHH
Confidence 44455667888887776655444333221 323334445566 999999999988887766677777666777788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 014213 132 LNRLDLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 132 LG~~deAl~~~~kAL~l~P~n~ 153 (429)
+|-+++|+-++++++.++|...
T Consensus 404 l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 404 LQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HhHHHHHHHHHHHHhccCChhc
Confidence 9999999999999999987543
No 404
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=59.59 E-value=26 Score=28.05 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 29 HSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKA 71 (429)
Q Consensus 29 ~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kA 71 (429)
+....+......++++|..+.+-|.-++.+||+..|+.++.-|
T Consensus 19 ~~~s~~~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 19 PEGSPLYDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp --TS---HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555666778999999999999999999999999987654
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.11 E-value=81 Score=32.13 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCCccHHHHHHHHHHHHHHcCCCCHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKL----LPRNHIDVSYLRSNMAACYMQMGLSEYP 102 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel----~P~~~~~~a~l~~nrA~~y~kl~~g~y~ 102 (429)
.+++|.+.+.+++++|+..|.+.|.. +....++.-....+++..|..+ |+|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~--g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSK--GDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhc--CCcc
Confidence 46788999999999999999998876 2211112234556788888877 6654
No 406
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=59.10 E-value=12 Score=31.10 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=36.6
Q ss_pred EEeCCceEEEE---ccCC-ccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh
Q 014213 266 LVFGEDIRVAQ---LPLN-SSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA 327 (429)
Q Consensus 266 ~~~~~DiR~~~---i~~~-~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~ 327 (429)
++||.|+...+ +|++ -+|.=|.-.+.+||| ..+|.+.|.|-+++--. +++-++|...-
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp-~~~f~~~YiDi~~p~~~---~~~~~~a~~I~ 62 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYP-DQPFEFTYIDIENPPEN---DHDQQFAERIL 62 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-T-TS-EEEEEEETTT-------HHHHHHHHHHH
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCC-CCceEEEEEecCCCCcc---HHHHHHHHHHH
Confidence 46777777655 4555 589999999999997 56899999997775432 56667776653
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.09 E-value=19 Score=25.85 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014213 87 SNMAACYMQMGLSEYPRAIHECNLALE 113 (429)
Q Consensus 87 ~nrA~~y~kl~~g~y~eAi~~~~~ALe 113 (429)
.++|.+|+.+ |+++.|...++.++.
T Consensus 3 LdLA~ayie~--Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEM--GDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHc--CChHHHHHHHHHHHH
Confidence 5789999999 999999999999995
No 408
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=57.05 E-value=36 Score=27.38 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 136 DLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 136 deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
.+|++.+.+++.+.|+++.-......+
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 334444455555667666544333333
No 409
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.17 E-value=16 Score=37.42 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSN-MAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~n-rA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~ 124 (429)
|-.-.+-.-+.+-|.+--..|.+++...|.+.+ +|.. .+.-|.-. ++++.+...+.++|+++|+.++.|+.
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd----lWI~~c~~e~~~~--ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD----LWIYCCAFELFEI--ANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce----eeeeeccchhhhh--ccHHHHHHHHHhhhccCCCCchHHHH
Confidence 555555556677888888999999999999986 5554 33345555 89999999999999999999886643
No 410
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.94 E-value=3.2e+02 Score=31.72 Aligned_cols=104 Identities=13% Similarity=-0.042 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN-----HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL 117 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~-----~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~ 117 (429)
..+.-....+=.+....+|.+|-.+..++-...+.. ....+.+-.-+|.+.... ++++.|+..++.++..-|.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~--~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR--GDPEEAEDLARLALVQLPE 490 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccc
Confidence 333344455666777889999999988887766541 112344445556666666 9999999999999988765
Q ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 118 Y-----SKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 118 ~-----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
. .-++...|.+..-.|+++.|+.+...+.++
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 3 346788899999999999999999988887
No 411
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.65 E-value=55 Score=38.52 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP---------- 116 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP---------- 116 (429)
.+..-|+.+|..+.|+.|--+|... +-|..+|..+..+ |+|..|....++|-...-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v------------SN~a~La~TLV~L--geyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV------------SNFAKLASTLVYL--GEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh------------hhHHHHHHHHHHH--HHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 3557799999999999999988642 2456788888888 999999999888743210
Q ss_pred ---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 117 ---------------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 117 ---------------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
-+..-+-.+-.-|...|.|++-+..++.+|.++..+-...-.++-++...
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 01112333345577889999999999999999887777777777666543
No 412
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=1.5e+02 Score=32.90 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=71.3
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHhC-CCCCc--------cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Q 014213 50 EEGNKLF---QKRDHGGALLKYEKALKLL-PRNHI--------DVSYLRSNMAACYMQMGLSEYPRAIHECNLALE---- 113 (429)
Q Consensus 50 ~~Gn~lf---~~gdyeeAl~~Y~kALel~-P~~~~--------~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe---- 113 (429)
+.|+.+| ...-|++|...|.-|+... |++.. .+.+ +..+|...-.. |+.+-|.....++|=
T Consensus 240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvds-LLqva~~~r~q--gD~e~aadLieR~Ly~~d~ 316 (665)
T KOG2422|consen 240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDS-LLQVADIFRFQ--GDREMAADLIERGLYVFDR 316 (665)
T ss_pred cCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhH-HHHHHHHHHHh--cchhhHHHHHHHHHHHHHH
Confidence 3444444 3556899999988887654 44321 1122 34455555555 887777766666651
Q ss_pred -hCC----------------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 014213 114 -VTP----------------L---YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMAAEIAERVK 163 (429)
Q Consensus 114 -ldP----------------~---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a~~~La~l~ 163 (429)
+.| . +..++|+.=..+...|.+.-|+++++..++++|. ++-+...+-.++
T Consensus 317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 112 2 2346677777888999999999999999999998 775544444433
No 413
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.73 E-value=29 Score=29.20 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=46.6
Q ss_pred EEeCCceEEEE---ccCC-ccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEE
Q 014213 266 LVFGEDIRVAQ---LPLN-SSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVV 338 (429)
Q Consensus 266 ~~~~~DiR~~~---i~~~-~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~ 338 (429)
++||.|+..++ +|.+ -+|.=|.-.+.+||| .-+|.+.|.|--.+ -..+.|+++|...-...-..-|.|+
T Consensus 8 ~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp-~~~F~~~YiDI~n~---~~e~~~~~~aekI~~dey~YPlivv 80 (106)
T COG4837 8 VVYGAEVICASCVNAPTSKDTYEWLEAALKRKYP-NQPFKYTYIDITNP---PLEDHDLQFAEKIEQDEYFYPLIVV 80 (106)
T ss_pred EEecchhhhHHhcCCCcchhHHHHHHHHHhccCC-CCCcEEEEEEcCCC---ccHHHHHHHHHHHhcccccceEEEE
Confidence 35888887766 5555 588889999999997 67899999992111 2335678888776443333334443
No 414
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=53.23 E-value=37 Score=27.57 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=34.8
Q ss_pred ceeEEEEeCCc-eEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHH
Q 014213 261 KKTVKLVFGED-IRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEEL 320 (429)
Q Consensus 261 ~~~vK~~~~~D-iR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl 320 (429)
.+++||.-.+- +|+-++ ..|+.+|+.++.++|.....-..=|.++||-.| ++||.
T Consensus 2 ~kp~kV~~~~r~~k~GV~--A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeV---ddEeY 57 (78)
T cd01615 2 LRPFKVCDSDRSRKKGVA--ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEV---DDEEY 57 (78)
T ss_pred CCCEEEecCCCCeeEEEE--cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEE---ccHHH
Confidence 35567764333 333332 248999999999999763333334677799554 66765
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.66 E-value=1.7e+02 Score=31.84 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV----SYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--- 115 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~----a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--- 115 (429)
-++..++..|..+|.++++.+|-....+.|+.. ++++. +..+.-++....-+ |+..++....+-++++.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lsl--gn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSL--GNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHh--cchHHHHhccchHHHHHhcC
Confidence 456678889999999999999999999999987 44432 33456677777778 99999999888888775
Q ss_pred CCCHHHHHHHH---HHHHHcCC--HHHHHHHHH
Q 014213 116 PLYSKALLKRA---RCYEALNR--LDLAFRDVT 143 (429)
Q Consensus 116 P~~~kAl~~rA---~ay~~LG~--~deAl~~~~ 143 (429)
||.+--++..+ ..|.+.|+ ...+.+.|.
T Consensus 519 ~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 519 PDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 56554444333 46677776 455555444
No 416
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.42 E-value=1.9e+02 Score=30.74 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213 83 SYLRSNMAACYMQMGLSEYPRAIHECNLAL----EVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI 158 (429)
Q Consensus 83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL----eldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~ 158 (429)
+++.+.+=.+|+.- +.|+.|-....++. ..+..+.+.+|.+|.+..-.++|..|.++|-.|+...|.+. ++-.
T Consensus 209 avLiN~LLr~yL~n--~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~-alGf 285 (493)
T KOG2581|consen 209 AVLINLLLRNYLHN--KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA-ALGF 285 (493)
T ss_pred HHHHHHHHHHHhhh--HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh-hhhH
Confidence 45555555566554 67777776665553 11225677889999999999999999999999999999843 3333
Q ss_pred HHHHHH
Q 014213 159 AERVKK 164 (429)
Q Consensus 159 La~l~~ 164 (429)
...+.+
T Consensus 286 ~q~v~k 291 (493)
T KOG2581|consen 286 RQQVNK 291 (493)
T ss_pred HHHHHH
Confidence 344433
No 417
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.37 E-value=32 Score=27.89 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
.+.|..+.+.|..+=..|+.++|+..|.++++..
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 4667777777777777788888888888777754
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.97 E-value=71 Score=29.40 Aligned_cols=50 Identities=14% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 101 YPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 101 y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
....++..++.+...| ++..|.+++.++..+|+.++|.+...++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666777777778 6888999999999999999999999999999993
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.57 E-value=38 Score=20.73 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhCCC
Q 014213 103 RAIHECNLALEVTPL 117 (429)
Q Consensus 103 eAi~~~~~ALeldP~ 117 (429)
.|...|++++...|.
T Consensus 5 ~~r~i~e~~l~~~~~ 19 (33)
T smart00386 5 RARKIYERALEKFPK 19 (33)
T ss_pred HHHHHHHHHHHHCCC
Confidence 333333333333333
No 420
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.69 E-value=1.4e+02 Score=31.78 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl 122 (429)
..|.-++-.|....-+.+|..|..++-+|++..|.+...-+.--++...|...+-.|++++-.-.++-.++ .....|
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL~~Y 321 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSLRPY 321 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHHHHH
Confidence 45667778888888889999999999999999997543222222333344333333777664433332222 123456
Q ss_pred HHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 123 LKRARCY--EALNRLDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 123 ~~rA~ay--~~LG~~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
|.+..+- ..+.+|..-++-|..-+..+-...-+.....
T Consensus 322 f~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~ 361 (493)
T KOG2581|consen 322 FKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRH 361 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 6665554 3445667777777766666655444433333
No 421
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=50.64 E-value=64 Score=36.49 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213 44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~ 123 (429)
+-.++++.|..++....|++|..+|... .+ .-+...||+++ ..|++-.. ..+.-|++.+.+-
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~-----~~-------~e~~~ecly~l--e~f~~LE~----la~~Lpe~s~llp 856 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYC-----GD-------TENQIECLYRL--ELFGELEV----LARTLPEDSELLP 856 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc-------hHhHHHHHHHH--HhhhhHHH----HHHhcCcccchHH
Confidence 3456788888888888888888888653 11 13567788777 66665332 2333477777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 014213 124 KRARCYEALNRLDLAFRDVTT 144 (429)
Q Consensus 124 ~rA~ay~~LG~~deAl~~~~k 144 (429)
.+|..+...|--++|++.|.+
T Consensus 857 ~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 857 VMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhhchHHHHHHHHHh
Confidence 778777777777777776643
No 422
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.37 E-value=86 Score=34.60 Aligned_cols=94 Identities=17% Similarity=0.057 Sum_probs=57.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 014213 53 NKLFQKRDHGGALLKYEKALKLLPR-NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLYSKALLKRARCY 129 (429)
Q Consensus 53 n~lf~~gdyeeAl~~Y~kALel~P~-~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~~kAl~~rA~ay 129 (429)
..+-++|.+..|++.+.-.+.++|. ++- -.....-++.|+..+|+=-|..++..-..+ ..++...|-+|.|+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl-----~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~ 424 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPL-----GILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALAR 424 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCch-----hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHH
Confidence 3455789999999999999999997 552 111222233333366666666665552222 12233345555555
Q ss_pred HHcC--C---HHHHHHHHHHHHHhCCC
Q 014213 130 EALN--R---LDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 130 ~~LG--~---~deAl~~~~kAL~l~P~ 151 (429)
..+. . -..|+.++.+|+.+.|.
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4443 3 45788899999998874
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.80 E-value=49 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213 133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162 (429)
Q Consensus 133 G~~deAl~~~~kAL~l~P~n~~a~~~La~l 162 (429)
|+++.|...|++++...|.+...+......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999999888776654
No 424
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.80 E-value=2e+02 Score=29.85 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=42.5
Q ss_pred HHHhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 014213 40 VFIGMSQELKEEGNKLFQKRDHG-GALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP 116 (429)
Q Consensus 40 ~~l~~A~~lk~~Gn~lf~~gdye-eAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP 116 (429)
.|..+....+.+-..+...|-.. +.+..+...|...|. ..-.+-+|..+|..+-.. |.++..|..|++|+....
T Consensus 97 ~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~-A~K~aKYWIC~Arl~~~~--~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 97 LFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPD-AKKLAKYWICLARLEPRT--GPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHcCC
Confidence 35556666666666666666653 455556666666663 223445566565555555 556666666666655543
No 425
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=48.54 E-value=33 Score=31.55 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=29.1
Q ss_pred ceeEEEEeCCc----eEEEEccCCccHHHHHHHHHhhCCCCCc
Q 014213 261 KKTVKLVFGED----IRVAQLPLNSSLLQLREVISDRFPSCRA 299 (429)
Q Consensus 261 ~~~vK~~~~~D----iR~~~i~~~~~~~~L~~~v~~kf~~~~~ 299 (429)
..++||.+.+. -|++.||.++||.+|-..|+.-|.-.+.
T Consensus 4 ~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~ 46 (179)
T PF07929_consen 4 VYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDD 46 (179)
T ss_dssp EEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----
T ss_pred EEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCC
Confidence 46788887542 7999999999999999999999964433
No 426
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.10 E-value=75 Score=35.34 Aligned_cols=88 Identities=14% Similarity=-0.007 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
..+++||++.++.. .+-.+.+++ |+++.|.+.+.++ ++..-|-.+|.+....+++..|.++|.+|
T Consensus 628 g~~e~AL~~s~D~d--------~rFelal~l--grl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 628 GMKEQALELSTDPD--------QRFELALKL--GRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred cchHhhhhcCCChh--------hhhhhhhhc--CcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34566666666433 133445667 8888887765444 66777899999999999999999999987
Q ss_pred HHh--------CCCCHHHHHHHHHHHHHHHh
Q 014213 146 LNK--------EPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 146 L~l--------~P~n~~a~~~La~l~~~l~e 168 (429)
..+ ..++.+.+..++...++.+.
T Consensus 693 ~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 693 RDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred cchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 654 24566666666665555544
No 427
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=47.43 E-value=1.7e+02 Score=28.85 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213 92 CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 92 ~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~ 154 (429)
.+++- +...+||.....-++.+|.+...-.-+-..|.-.|+|..|+.-++-+-.++|+...
T Consensus 10 eLL~~--~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDD--NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHh--ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 44555 88999999999999999999888888888999999999999999999999998653
No 428
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=46.81 E-value=1.4e+02 Score=23.97 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=38.3
Q ss_pred ceeEEEEeCCc----eEEEEccCCccHHHHHHHHHhhCC--CCCceEEEEECCCCCEEEe
Q 014213 261 KKTVKLVFGED----IRVAQLPLNSSLLQLREVISDRFP--SCRAVLIKYRDEEGDLVTI 314 (429)
Q Consensus 261 ~~~vK~~~~~D----iR~~~i~~~~~~~~L~~~v~~kf~--~~~~~~iky~DedgDliti 314 (429)
++++|++.+.| .|++.||.+..|.-.+.-..+-|. ......| -+ ||+=|.=
T Consensus 2 kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiI--tn-dG~GInP 58 (76)
T PF03671_consen 2 KVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAII--TN-DGVGINP 58 (76)
T ss_dssp EEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEE--ES-SS-EE-T
T ss_pred cEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEE--ec-CCccccc
Confidence 68999999999 789999999999999999999994 3333332 22 6766653
No 429
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=46.71 E-value=1e+02 Score=23.92 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=41.3
Q ss_pred EEeCCc-eEEEEccCCccHHHHHHHHHhhCCCC--CceEEEE-ECCCCCEEEecChHHH
Q 014213 266 LVFGED-IRVAQLPLNSSLLQLREVISDRFPSC--RAVLIKY-RDEEGDLVTITTDEEL 320 (429)
Q Consensus 266 ~~~~~D-iR~~~i~~~~~~~~L~~~v~~kf~~~--~~~~iky-~DedgDliti~~~~dl 320 (429)
|++-|| +..+.+..+.+-.+|.+.|.+++... .-|-|.| .|.+|..+-+..+.-|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l 59 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKL 59 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBG
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccH
Confidence 344444 57777999999999999999999543 3399999 8888888666555544
No 430
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=46.30 E-value=20 Score=28.79 Aligned_cols=45 Identities=31% Similarity=0.493 Sum_probs=26.3
Q ss_pred EEEEECCCCCEEEecC-hHHHHHHHHhhccCCcEEEEEEeeCCCCchhhhhhh
Q 014213 301 LIKYRDEEGDLVTITT-DEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFK 352 (429)
Q Consensus 301 ~iky~DedgDliti~~-~~dl~~a~~~~~~~~~~rl~v~e~~~~~e~~~~~~~ 352 (429)
.|+-.|+||.++-+.+ .+-|++|.+. | |-+++|+|...|++-.++
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~----~---lDLV~v~~~~~PPVcKi~ 59 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEK----G---LDLVEVSPNADPPVCKIM 59 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHT----T----EEEEEETTSSS-EEEEE
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHc----C---CcEEEEcCCCCCCeEEEe
Confidence 3555699999995444 4557777663 3 456667788778755543
No 431
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=45.55 E-value=44 Score=26.74 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=26.2
Q ss_pred ccCCccHHHHHHHHHhhC----CCCCceEE-EEECCCC
Q 014213 277 LPLNSSLLQLREVISDRF----PSCRAVLI-KYRDEEG 309 (429)
Q Consensus 277 i~~~~~~~~L~~~v~~kf----~~~~~~~i-ky~Dedg 309 (429)
..+++++.+|.+.|..+| |...++.| +.+|++|
T Consensus 9 t~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~ 46 (73)
T PF10407_consen 9 TDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDG 46 (73)
T ss_pred eCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCC
Confidence 577899999999999988 66656554 7888887
No 432
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=45.40 E-value=41 Score=27.01 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhhCCCCC-ceEEEEECCCCCEEEecChHHH
Q 014213 281 SSLLQLREVISDRFPSCR-AVLIKYRDEEGDLVTITTDEEL 320 (429)
Q Consensus 281 ~~~~~L~~~v~~kf~~~~-~~~iky~DedgDliti~~~~dl 320 (429)
-|+.+|+.++.++|.... .+.| |.++||..| ++||.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l-~L~eDGT~V---ddEey 55 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTL-VLEEDGTIV---DDEEY 55 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEE-EEecCCcEE---ccHHH
Confidence 489999999999997653 4444 677799554 66775
No 433
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=44.99 E-value=48 Score=26.98 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=34.9
Q ss_pred ceeEEEEeCCc-eEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHH
Q 014213 261 KKTVKLVFGED-IRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEEL 320 (429)
Q Consensus 261 ~~~vK~~~~~D-iR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl 320 (429)
.+++||.-.+- +|+-++ ..|+.+|+.++.++|.....+. =|.++||-.| ++||.
T Consensus 2 ~kp~kV~~~~rs~k~GV~--A~sL~eL~~K~~~~l~l~~~~~-lvL~eDGT~V---d~Eey 56 (79)
T cd06538 2 PRPFRVSNADRSLRKGIM--ADSLEDLLNKVLDALLLDCISS-LVLDEDGTGV---DTEEF 56 (79)
T ss_pred CCcEEEecCCCceeEeEE--cCCHHHHHHHHHHHcCCCCccE-EEEecCCcEE---ccHHH
Confidence 35667763332 333332 2489999999999997654433 4677899554 66775
No 434
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=44.37 E-value=52 Score=35.10 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHH----------------HHHHHHcCCC---CHHHHHH
Q 014213 46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNM----------------AACYMQMGLS---EYPRAIH 106 (429)
Q Consensus 46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nr----------------A~~y~kl~~g---~y~eAi~ 106 (429)
...+..|...+..++|.+++..+..||+..-....+.+.++.+. +.+|..+ .| +....+.
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~-fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAI-FGHLLERAACLR 110 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHH-HHHHHHHHHHHH
Confidence 45678899999999999999999999886421111000111111 1111110 01 1222333
Q ss_pred HHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213 107 ECNLALEVTPLY----------SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168 (429)
Q Consensus 107 ~~~~ALeldP~~----------~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e 168 (429)
.|...+...|.. ...|-.+-.||+..|++..|++.....+--+|++..+...+..-...++.
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~ 182 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGV 182 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCC
Confidence 333333222222 24677888999999999999999999999999999999998887766644
No 435
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=43.32 E-value=2.1e+02 Score=33.57 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHH
Q 014213 59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL-------LKRARCYEA 131 (429)
Q Consensus 59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl-------~~rA~ay~~ 131 (429)
..|.+|+..|+. |.-.|.-+ .=|...|.+|-++ ++|++-+..+..|+..-|.++..- ||+-.+++.
T Consensus 533 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (932)
T PRK13184 533 RDFTQALSEFSY-LHGGVGAP----LEYLGKALVYQRL--GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK 605 (932)
T ss_pred HHHHHHHHHHHH-hcCCCCCc----hHHHhHHHHHHHh--hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH
Confidence 457777777766 33344444 3577888899999 999999999999999999887643 343333332
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213 132 LNRLDLAFRDVTTVLNKEPKNIMAA 156 (429)
Q Consensus 132 LG~~deAl~~~~kAL~l~P~n~~a~ 156 (429)
+...|+...--++...|......
T Consensus 606 --~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 606 --HRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred --HHHHHHHHHHHHHHhCcccccch
Confidence 34678888888899999765443
No 436
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=42.87 E-value=73 Score=20.37 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213 105 IHECNLALEVTPLYSKALLKRARCY 129 (429)
Q Consensus 105 i~~~~~ALeldP~~~kAl~~rA~ay 129 (429)
+..+..+|..+|.+..+|..|-.++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3444455555555555555444443
No 437
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=42.40 E-value=2.3e+02 Score=29.54 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhCCCCHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPR--AIHECNLALEVTPLYSKALL 123 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~e--Ai~~~~~ALeldP~~~kAl~ 123 (429)
=..-|..+....||..|..+|-+|++-.-.-..+ .-+.+-.+-.|-..+ +..++ ++-....+++.+.....|+.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMl--n~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIML--NLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 3456788888899999999999999865432211 112233344555555 55555 45556678888889999999
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213 124 KRARCYEA--LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG 170 (429)
Q Consensus 124 ~rA~ay~~--LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~ 170 (429)
..|.++.. +.+|..|+..|..=|..+ +.++..++.++..|-++.
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~lLEkn 335 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNLLEKN 335 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHHHHHh
Confidence 99999964 458889999988888765 477788888887775544
No 438
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=42.19 E-value=2.4e+02 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=32.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 37 DTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 37 d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
+....+.+|......+...+..|+|..|...-++|+++.
T Consensus 5 ~~~~~~~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~ 43 (132)
T COG2250 5 EAEKWLRRAERDLKLAKRDLELGDYDLACFHAQQAVELA 43 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 445677999999999999999999998888777777754
No 439
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=41.38 E-value=5e+02 Score=28.79 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-PLYSKALLKRA 126 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-P~~~kAl~~rA 126 (429)
|+.-...-...|+++...-.|++++.-.....+ +|.+.+...... |+..-|-....++.++. |.-+-..+.-|
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e----fWiky~~~m~~~--~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDE----FWIKYARWMESS--GDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH----HHHHHHHHHHHc--CchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 444444445678888888888888777666665 777777666666 77777777777777764 44455555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~ 167 (429)
..-...|++..|...+++..+--|+...+-........+.+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 66667778888888888888766776665544444444444
No 440
>PF14544 DUF4443: Domain of unknown function (DUF4443); PDB: 2P8T_A.
Probab=40.93 E-value=18 Score=31.16 Aligned_cols=21 Identities=48% Similarity=0.425 Sum_probs=16.1
Q ss_pred CCCCEEEecChHHHHHHHHhh
Q 014213 307 EEGDLVTITTDEELRWAEASA 327 (429)
Q Consensus 307 edgDliti~~~~dl~~a~~~~ 327 (429)
+|||+|.||+-++.--|+.++
T Consensus 76 ~egD~IIIt~ae~~~~A~ksa 96 (108)
T PF14544_consen 76 SEGDLIIITWAEDPGDAMKSA 96 (108)
T ss_dssp -TT-EEEEEE-SSHHHHHHHH
T ss_pred cCCCEEEEEccCCHHHHHHHH
Confidence 689999999999998888765
No 441
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.59 E-value=56 Score=34.04 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR 77 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~ 77 (429)
+.+..+...|+.++..++|+.|...|..|..+...
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999988653
No 442
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.54 E-value=1.5e+02 Score=26.55 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----c---cH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHH----
Q 014213 47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH----I---DV----SYLRSNMAACYMQMGLSEYPRAIHECNLA---- 111 (429)
Q Consensus 47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~----~---~~----a~l~~nrA~~y~kl~~g~y~eAi~~~~~A---- 111 (429)
.+-..|+.+++.+++-.++-.|++|+.+..+-. . ++ ..-.-|+|.-|..+ |+.+=.+.+++.|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~--gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQ--GDSDYELKYLQLASEKV 80 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHc--CChHHHHHHHHHHHHHH
Confidence 456789999999999999999999998754321 1 11 11234678888888 8877777777654
Q ss_pred HHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCC
Q 014213 112 LEVTPLYSKALLKRARC-YEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 112 LeldP~~~kAl~~rA~a-y~~LG~~deAl~~~~kAL~l~P~ 151 (429)
+.+-|..+.. ...+ ...+|.-..|+-+| ++..|+
T Consensus 81 ltLiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN 115 (140)
T PF10952_consen 81 LTLIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN 115 (140)
T ss_pred HHhccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC
Confidence 4455654331 1222 13455555565554 355664
No 443
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=40.40 E-value=43 Score=27.13 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=31.3
Q ss_pred eeEEEEeCC-ceEEEEccCCccHHHHHHHHHhhCCCCC-ceEEEEECCCCCEE
Q 014213 262 KTVKLVFGE-DIRVAQLPLNSSLLQLREVISDRFPSCR-AVLIKYRDEEGDLV 312 (429)
Q Consensus 262 ~~vK~~~~~-DiR~~~i~~~~~~~~L~~~v~~kf~~~~-~~~iky~DedgDli 312 (429)
+++||.--+ -+|+-++ .-|+.+|+.+..++|.... .++| |.++||..|
T Consensus 3 kp~kV~~~~rs~k~GV~--A~sL~eL~~K~~~~l~l~~~~~~l-~L~eDGTeV 52 (77)
T cd06535 3 KCVKIRSLNSAQKYGVA--AKNLKELLRKGCRLLQLPCAGSRL-CLYEDGTEV 52 (77)
T ss_pred CceEEecCCCCeeEeEE--cCCHHHHHHHHHHHhCCCCCCcEE-EEecCCcEe
Confidence 455665222 2333332 2489999999999996543 4444 568899988
No 444
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=40.38 E-value=94 Score=22.49 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=31.1
Q ss_pred EEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEEC
Q 014213 264 VKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRD 306 (429)
Q Consensus 264 vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~D 306 (429)
|.|...+....+.++.+.++.+|...|..+++.. ..++|.|..
T Consensus 3 i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g 46 (64)
T smart00213 3 LTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKG 46 (64)
T ss_pred EEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 4444433566777999999999999999999532 337777753
No 445
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=40.28 E-value=2.4e+02 Score=24.13 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHH
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL---------ALEVTPLYSKALLKRAR 127 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~---------ALeldP~~~kAl~~rA~ 127 (429)
+.+.+..++.+.+.++..++.+.. ++..+..+|.+. +..+.+..+.. |+.+...+ ..|-....
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~----~~~~li~ly~~~---~~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~ 90 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPA----LQTKLIELYAKY---DPQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVE 90 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchh----HHHHHHHHHHHH---CHHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHH
Confidence 456889999999999988775553 777777777765 44555555442 11111110 11223344
Q ss_pred HHHHcCCHHHHHHHHH
Q 014213 128 CYEALNRLDLAFRDVT 143 (429)
Q Consensus 128 ay~~LG~~deAl~~~~ 143 (429)
.|...|.+.+|+..+-
T Consensus 91 l~~k~~~~~~Al~~~l 106 (140)
T smart00299 91 LYKKDGNFKDAIVTLI 106 (140)
T ss_pred HHHhhcCHHHHHHHHH
Confidence 5556666666665543
No 446
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=39.88 E-value=79 Score=31.82 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=68.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---C---H
Q 014213 53 NKLFQKRDHGGALLKYEKALKLLPRNHID-------VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---Y---S 119 (429)
Q Consensus 53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~-------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~---~ 119 (429)
..++...+.-.|+..|...+.-.|.+-.. +--+|.....|+.. -....|...++.||-..-. . .
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~---~~~~n~~e~~d~ALm~Ae~r~D~~~IG 79 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSD---ATMENAKELLDKALMTAEGRGDRSKIG 79 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcc---cChhhHHHHHHHHHHhhhccCCcceee
Confidence 34566777778999999999988887541 11233444444433 3567888888988866422 1 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151 (429)
Q Consensus 120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~ 151 (429)
-.-++++.+|+.+.+|+.|-.+|.+|+.+--+
T Consensus 80 ~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 80 LVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred eehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 24688899999999999999999999998543
No 447
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=39.03 E-value=74 Score=27.06 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 38 TEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 38 ~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
....+..|..+..+|..+++.||.+.|.-.|-+.+.+.
T Consensus 31 l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 31 LKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34577999999999999999999999999999888775
No 448
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.79 E-value=1.1e+02 Score=38.86 Aligned_cols=110 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---------------------------CCCHH
Q 014213 50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG---------------------------LSEYP 102 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~---------------------------~g~y~ 102 (429)
..+..-|.-+.|..|+.++++- ...+...+....++.++-.+|..++ .|+|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHH
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
.|..+|+++++.+|+..+.+.+.-.+.+.+|.+...+-..+-.....+....-+..++
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
No 449
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.75 E-value=2e+02 Score=29.41 Aligned_cols=45 Identities=24% Similarity=0.170 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213 99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT 143 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~ 143 (429)
...-+|+..++.++..+|.+....+.+...|..+|-...|...|.
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778889999999999999999999999999999999998885
No 450
>PF12854 PPR_1: PPR repeat
Probab=38.68 E-value=76 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014213 119 SKALLKRARCYEALNRLDLAFRDVTT 144 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG~~deAl~~~~k 144 (429)
.-.|..+-.+|...|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44566666677777777777766653
No 451
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.50 E-value=1.2e+02 Score=33.26 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213 49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125 (429)
Q Consensus 49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r 125 (429)
..++..+.-.|+-+.|+..++.++. +....-...+++-+|.+++-+ -+|.+|..++......+ +|..|+|..
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~--~~~~~aad~~~~L~des-dWS~a~Y~Y 342 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQ--HQYSRAADSFDLLRDES-DWSHAFYTY 342 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhhh-hhhHHHHHH
Confidence 3455555556665556666665555 211101134556666666666 66676666666555444 555555443
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.87 E-value=55 Score=26.29 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHh
Q 014213 99 SEYPRAIHECNLALEV 114 (429)
Q Consensus 99 g~y~eAi~~~~~ALel 114 (429)
|+|++|+..|..||+.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7778888877777654
No 453
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.77 E-value=67 Score=24.59 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=8.0
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 014213 129 YEALNRLDLAFRDVTTVL 146 (429)
Q Consensus 129 y~~LG~~deAl~~~~kAL 146 (429)
+-..|++++|+..|..++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHTTSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 334444444444444433
No 454
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=37.28 E-value=1.3e+02 Score=32.15 Aligned_cols=25 Identities=8% Similarity=-0.081 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014213 85 LRSNMAACYMQMGLSEYPRAIHECNLA 111 (429)
Q Consensus 85 l~~nrA~~y~kl~~g~y~eAi~~~~~A 111 (429)
.|..+|...+.. |+++-|...|.++
T Consensus 349 ~W~~Lg~~AL~~--g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQ--GNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHT--TBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence 455555555555 5555555555443
No 455
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=37.04 E-value=78 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=30.4
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCC
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEE 308 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~Ded 308 (429)
.-|.|.-.+=+.|+.++++.++.+|.++|.+.|+.. ..+.| |.|..
T Consensus 5 milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L-~~~~~ 51 (80)
T PF11543_consen 5 MILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSL-SKDRN 51 (80)
T ss_dssp -EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT----BSSGG
T ss_pred EEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEE-EecCC
Confidence 456677667799999999999999999999999543 34555 55543
No 456
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=36.67 E-value=2.3e+02 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 116 PLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 116 P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
..++..++.+|.||..+|+..+|-+.+.+|-+
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45688999999999999999999988888765
No 457
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=36.66 E-value=88 Score=24.33 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhCCC
Q 014213 137 LAFRDVTTVLNKEPK 151 (429)
Q Consensus 137 eAl~~~~kAL~l~P~ 151 (429)
.|++.|..++..+|+
T Consensus 33 ~a~e~l~~~~~~~~~ 47 (77)
T smart00745 33 KAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHhccCCC
Confidence 344444444555654
No 458
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=36.17 E-value=2.3e+02 Score=30.24 Aligned_cols=29 Identities=7% Similarity=-0.159 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 117 LYSKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 117 ~~~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
+...-|-++|.+....|+++.|..+|.++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 56778999999999999999999999875
No 459
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.08 E-value=87 Score=30.36 Aligned_cols=49 Identities=29% Similarity=0.345 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213 62 GGALLKYEKALKLL-----PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL 112 (429)
Q Consensus 62 eeAl~~Y~kALel~-----P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL 112 (429)
+.|...|++|+.+. |.++ .+-.+..|.+..|+.. .++.++|+..+..|+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p-~rLgl~LN~svF~yei-~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHP-LRLGLALNYSVFYYEI-LNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSH-HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCc-HHHHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence 56677777776643 3333 2223334444444332 277777777766664
No 460
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=35.70 E-value=34 Score=29.13 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.9
Q ss_pred eEEEEccCCccHHHHHHHHHhhCC
Q 014213 272 IRVAQLPLNSSLLQLREVISDRFP 295 (429)
Q Consensus 272 iR~~~i~~~~~~~~L~~~v~~kf~ 295 (429)
-..+.||.+.++.+|+..||++..
T Consensus 34 k~KfLvp~~~tv~qf~~~ir~rl~ 57 (104)
T PF02991_consen 34 KKKFLVPKDLTVGQFVYIIRKRLQ 57 (104)
T ss_dssp SSEEEEETTSBHHHHHHHHHHHTT
T ss_pred ccEEEEcCCCchhhHHHHhhhhhc
Confidence 355568999999999999999994
No 461
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=35.46 E-value=1.4e+02 Score=25.16 Aligned_cols=33 Identities=24% Similarity=0.085 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
+++.....+|...+-.|||..|.....++-+..
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 566777778888888888888888888886653
No 462
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=34.77 E-value=1.3e+02 Score=24.09 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 014213 136 DLAFRDVTTVLNKEPKNI 153 (429)
Q Consensus 136 deAl~~~~kAL~l~P~n~ 153 (429)
.+|++.|..++..+|+..
T Consensus 30 ~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 30 QEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHhhCCCHH
Confidence 344444555555666443
No 463
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.12 E-value=1.1e+02 Score=30.92 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=42.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE 113 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe 113 (429)
...+.++|+..|++.+++.+.-.+--..++-.+-..++++ ++|++.+..|.+.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l--~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRL--GNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHH
Confidence 4557899999999999999876543344566666778888 999999888887763
No 464
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.09 E-value=1.9e+02 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=14.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 014213 126 ARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kAL~l 148 (429)
|..+...|+.++|+.+|++++..
T Consensus 15 aL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 15 ALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HhhhhhcCCHHHHHHHHHHHHHH
Confidence 33444456777777777776653
No 465
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=33.92 E-value=1.2e+02 Score=19.37 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213 138 AFRDVTTVLNKEPKNIMAAEIAERVKKEL 166 (429)
Q Consensus 138 Al~~~~kAL~l~P~n~~a~~~La~l~~~l 166 (429)
.+.....++..+|.|-.++..+..+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 56788999999999999999988887654
No 466
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.68 E-value=1.7e+02 Score=26.25 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI 80 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~ 80 (429)
.-+-.+.|++.--.++.+-+.+.|-..|.+.++..|++-.
T Consensus 72 ~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLp 111 (139)
T PF12583_consen 72 WDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLP 111 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-TH
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHH
Confidence 3355566777777777778888888888888888887764
No 467
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=58 Score=33.39 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
++.+|..|...+...=+.++|++|+.+|..||++.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 67888888888888888899999999998888753
No 468
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.01 E-value=1.1e+02 Score=23.68 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhCCC
Q 014213 137 LAFRDVTTVLNKEPK 151 (429)
Q Consensus 137 eAl~~~~kAL~l~P~ 151 (429)
.|++.|..++..+|+
T Consensus 31 ~a~e~l~~~~~~~~~ 45 (75)
T cd02656 31 EALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHhccCCC
Confidence 334444444445554
No 469
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.87 E-value=1.4e+02 Score=26.27 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH 79 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~ 79 (429)
-..-...|..+...|++++|+..|-+||...|.-.
T Consensus 63 Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 63 FLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 34456789999999999999999999999999643
No 470
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.85 E-value=1.7e+02 Score=21.17 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=40.6
Q ss_pred ccCCccHHHHHHHHHhhCCCCCceEEEEECCCC-----CEEEecChHHHHHHHHh
Q 014213 277 LPLNSSLLQLREVISDRFPSCRAVLIKYRDEEG-----DLVTITTDEELRWAEAS 326 (429)
Q Consensus 277 i~~~~~~~~L~~~v~~kf~~~~~~~iky~Dedg-----Dliti~~~~dl~~a~~~ 326 (429)
||.+++-.+|++.+.. |+....+.|... ..| =+|++.+.+|...|++.
T Consensus 6 lp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp ETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHH
Confidence 8999999999999988 887777777776 344 58999999999999884
No 471
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.62 E-value=3.2e+02 Score=29.95 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q 014213 83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP-------LYSKALLKRARCYEALNR-LDLAFRDVTTVLNKEPKNIM 154 (429)
Q Consensus 83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP-------~~~kAl~~rA~ay~~LG~-~deAl~~~~kAL~l~P~n~~ 154 (429)
-.-+.-+|.++-.| |+-..|...+..+++-.. -.+-|+|-+|..|..++. ..+|..++.+|-.-..+..-
T Consensus 449 ~lk~lL~g~~lR~L--g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 449 GLKYLLKGVILRNL--GDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 34466789999999 999999999998874321 136799999999999999 99999999999887655433
Q ss_pred HHHHHHHHHHHH
Q 014213 155 AAEIAERVKKEL 166 (429)
Q Consensus 155 a~~~La~l~~~l 166 (429)
-....-+++.++
T Consensus 527 enRLh~rIqAAl 538 (546)
T KOG3783|consen 527 ENRLHMRIQAAL 538 (546)
T ss_pred hhHHHHHHHHHH
Confidence 333333444444
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=32.61 E-value=15 Score=40.11 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHhCCC-
Q 014213 43 GMSQELKEEGNKLFQKRDHGGALLKYEKAL--KLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL--ALEVTPL- 117 (429)
Q Consensus 43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kAL--el~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~--ALeldP~- 117 (429)
.++.-+...+..+++.|++..|...+.+.- .+.|... ..+....|.+.+.. +++..|+..+.. ...+.+.
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~---~~~~Ll~A~lal~~--~~~~~Al~~L~~~~~~~l~~~~ 96 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQ---ARYQLLRARLALAQ--GDPEQALSLLNAQDLWQLPPEQ 96 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHH---HHHHHHHHHHHHhc--CCHHHHHHHhccCCcccCCHHH
Confidence 334556667788899999999999988765 2333322 34455567777777 999999998874 2222222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEP 150 (429)
Q Consensus 118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P 150 (429)
....|..+|.+|...|++-+|...+-..-.+-+
T Consensus 97 ~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 97 QARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 344566679999999999998887666555544
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.54 E-value=2.5e+02 Score=32.26 Aligned_cols=93 Identities=19% Similarity=0.151 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCHHHHHHHHH------HHHHhCCC-CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH------HHhC-
Q 014213 50 EEGNKLFQKRDHGGALLKYE------KALKLLPR-NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA------LEVT- 115 (429)
Q Consensus 50 ~~Gn~lf~~gdyeeAl~~Y~------kALel~P~-~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~A------Leld- 115 (429)
..|..+-+-.+++.|+++|. +||++..- .++....+--.-|.-+.+. |+|+.|+..|-.| ++..
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~--~q~daainhfiea~~~~kaieaai 743 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQI--GQLDAAINHFIEANCLIKAIEAAI 743 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHH--HhHHHHHHHHHHhhhHHHHHHHHh
Confidence 44566666777888888765 46665432 1211222222223334444 6666666544332 1110
Q ss_pred --CCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 014213 116 --PLYS----------------KALLKRARCYEALNRLDLAFRDVTT 144 (429)
Q Consensus 116 --P~~~----------------kAl~~rA~ay~~LG~~deAl~~~~k 144 (429)
..|. ..|-..|..|..+|+|+-|.+.|.+
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 1122 2233457778888888877776644
No 474
>PLN03090 auxin-responsive family protein; Provisional
Probab=32.52 E-value=88 Score=26.80 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=36.6
Q ss_pred EEEEeCCceEEEEccCC----ccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHH
Q 014213 264 VKLVFGEDIRVAQLPLN----SSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEEL 320 (429)
Q Consensus 264 vK~~~~~DiR~~~i~~~----~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl 320 (429)
+=|.-|++-||++||.+ ..|.+|++.-.+-|+. +.+| -|||-++.++
T Consensus 45 ~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf---------~~~G-~L~IPC~~~~ 95 (104)
T PLN03090 45 FPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGF---------DHDM-GLTIPCEEVV 95 (104)
T ss_pred EEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCC---------CCCC-cEEEeCCHHH
Confidence 44444888889999887 5899999999999963 2356 5899998764
No 475
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.28 E-value=1.7e+02 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213 45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLP 76 (429)
Q Consensus 45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P 76 (429)
++-++.-|+-+|++|+|++|+..|-++|....
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 35677889999999999999999999887643
No 476
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=31.86 E-value=1.4e+02 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHh-----CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213 61 HGGALLKYEKALKL-----LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL 112 (429)
Q Consensus 61 yeeAl~~Y~kALel-----~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL 112 (429)
-+.|...|+.|+++ .|.++. +-.+..|.+..|+.. .++.++|+..+..|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~Pi-rLgLaLN~SVF~yEI-~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPI-RLGLALNFSVFYYEI-LNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 34677777777664 233432 222233334443332 266666666555553
No 477
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=31.85 E-value=1.8e+02 Score=26.36 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=45.2
Q ss_pred CceeEEEEeCC-ceEEEEccCCccHHHHHHHHHhhCCC--CCceEEEEECCCCCE-EEecChHHH
Q 014213 260 PKKTVKLVFGE-DIRVAQLPLNSSLLQLREVISDRFPS--CRAVLIKYRDEEGDL-VTITTDEEL 320 (429)
Q Consensus 260 ~~~~vK~~~~~-DiR~~~i~~~~~~~~L~~~v~~kf~~--~~~~~iky~DedgDl-iti~~~~dl 320 (429)
..+.++|++-+ -...+.+..+.+..++.+.|.++++. ...|.|.+.|.++.. .-+.....|
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l 66 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTL 66 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCH
Confidence 35678888744 56677799999999999999999954 345999999987755 334333333
No 478
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=31.20 E-value=2.9e+02 Score=28.44 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=39.2
Q ss_pred ccCCccHHHHHHHHHhhCCCCCceEEEEECCCCC-----EEEecChHHHHHHHHhh
Q 014213 277 LPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGD-----LVTITTDEELRWAEASA 327 (429)
Q Consensus 277 i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgD-----liti~~~~dl~~a~~~~ 327 (429)
||.+++-.+|++.+ .+|.....+.|......|- +|++.+.++...|+..-
T Consensus 201 Lp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 201 LPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred CCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 89999999998877 6777676777764333553 89999999999998853
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.05 E-value=3.5e+02 Score=23.41 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCccH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Q 014213 59 RDHGGALLKYEKALKLLPRNHIDV-SYLRSNMAACYMQMGLSEYPRAIHECNLALE--VTPLYSKALLKRARCYEALNRL 135 (429)
Q Consensus 59 gdyeeAl~~Y~kALel~P~~~~~~-a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe--ldP~~~kAl~~rA~ay~~LG~~ 135 (429)
+.-..-...++++++....+.... -.-+..+-.-|..+ -+ .+...|..... +--..+..|-..|..+...|++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~--~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL--SS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT--BS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH--cc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence 555566677888888765543211 01234444555555 33 66777766654 5577888999999999999999
Q ss_pred HHHHHHHHHHH
Q 014213 136 DLAFRDVTTVL 146 (429)
Q Consensus 136 deAl~~~~kAL 146 (429)
.+|...|++++
T Consensus 116 ~~A~~I~~~Gi 126 (126)
T PF08311_consen 116 KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999999875
No 480
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.84 E-value=69 Score=25.52 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhC
Q 014213 102 PRAIHECNLALEVT 115 (429)
Q Consensus 102 ~eAi~~~~~ALeld 115 (429)
.+|+..+.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 481
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.78 E-value=6e+02 Score=30.57 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l 148 (429)
.+|+.+|.+.++. +...+||..|-+| +++..|...-.+....|.|++=+.++..|-+-
T Consensus 1105 ~vWsqlakAQL~~--~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQG--GLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4899999999998 9999999999665 78888999999999999999999998887754
No 482
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=30.35 E-value=1.7e+02 Score=23.74 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=33.2
Q ss_pred eeEEEEe-CCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHH
Q 014213 262 KTVKLVF-GEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEEL 320 (429)
Q Consensus 262 ~~vK~~~-~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl 320 (429)
+++||.- ..-+|+-++ ..++.+|+.++.++|... ..++| ..+|||. +-+++|.
T Consensus 3 kpfkV~~~~r~~k~GV~--A~sL~EL~~K~~~~l~~~~~~~~l-vL~eDGT---~Vd~Eey 57 (78)
T cd06539 3 RPFRVSNHDRSSRRGVM--ASSLQELISKTLDALVITSGLVTL-VLEEDGT---VVDTEEF 57 (78)
T ss_pred CcEEEecCCCCceEEEE--ecCHHHHHHHHHHHhCCCCCCcEE-EEeCCCC---EEccHHH
Confidence 4455542 233455443 248999999999999653 34555 3466895 4467775
No 483
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.32 E-value=4.2e+02 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHhC
Q 014213 99 SEYPRAIHECNLALEVT 115 (429)
Q Consensus 99 g~y~eAi~~~~~ALeld 115 (429)
|+|+.++.+|.+|..+-
T Consensus 100 ~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 100 GDYDQAINDYKKAKSLF 116 (182)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 66666666666665543
No 484
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=6.7e+02 Score=26.19 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=62.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------hCCC-CHHHHHHHH
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALE-------VTPL-YSKALLKRA 126 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-------ldP~-~~kAl~~rA 126 (429)
+-+|.++|++..++.++..-...+ ....+....|.|++.. |+..++......+-. +.|+ +...|..-+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i--~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEI--NDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 345899999999998886543332 4567778888899888 999888776665543 2232 233333345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Q 014213 127 RCYEALNRLDLAFRDVTTVLNKE 149 (429)
Q Consensus 127 ~ay~~LG~~deAl~~~~kAL~l~ 149 (429)
.-|...|++..+..+.-+.|.+.
T Consensus 165 qYyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHhccc
Confidence 66778888888877776666654
No 485
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=77 Score=35.37 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=47.9
Q ss_pred EeCCceEEEEccCCccHHHHHHHHHhhCCC-CCceEEEEECCCCCEEEecChHHHHH
Q 014213 267 VFGEDIRVAQLPLNSSLLQLREVISDRFPS-CRAVLIKYRDEEGDLVTITTDEELRW 322 (429)
Q Consensus 267 ~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~DedgDliti~~~~dl~~ 322 (429)
++|+|+..+.++..-+..+|.++|..-|-. ...|+|-|.+++-+.-+..+++.+.-
T Consensus 153 n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~ 209 (823)
T COG5560 153 NLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRR 209 (823)
T ss_pred hcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhh
Confidence 345678888899999999999999999954 56899999999999999999888743
No 486
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.35 E-value=1.6e+02 Score=29.81 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213 99 SEYPRAIHECNLALEVTPLY----SKALLKRARCYEALNRLDLAFRDVTTVLN 147 (429)
Q Consensus 99 g~y~eAi~~~~~ALeldP~~----~kAl~~rA~ay~~LG~~deAl~~~~kAL~ 147 (429)
.+.++|+..|.+++++.+.- .+|+-..-.+++.+++|++-+..|...|.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 68999999999999999863 56788888899999999988888877664
No 487
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.19 E-value=1.3e+02 Score=31.41 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-Hh---C----CCCH
Q 014213 48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL-EV---T----PLYS 119 (429)
Q Consensus 48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL-el---d----P~~~ 119 (429)
++..++...+.++..-.+....+|+...-........+|..+..|-++. ++|.-+...++--+ ++ + |.+.
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~a--k~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEA--KDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHh--hcccccCCccchhHHHHhccCCCCCHHHH
Confidence 4566777777777777777777776654333224556777777777777 77777665544322 22 3 3332
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 120 K-ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE 160 (429)
Q Consensus 120 k-Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La 160 (429)
- .+|+-|..|..+.+|+.|+-.|.-++.. |........++
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~-Pa~~vs~~hlE 223 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT-PAMAVSHIHLE 223 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc-chhHHHHHHHH
Confidence 2 2344577888999999999999999986 65544433333
No 488
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.87 E-value=1.7e+02 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhCCC
Q 014213 137 LAFRDVTTVLNKEPK 151 (429)
Q Consensus 137 eAl~~~~kAL~l~P~ 151 (429)
.|++.|..++..+|+
T Consensus 31 ~aie~l~~~~k~e~~ 45 (75)
T cd02678 31 HALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHhhCCC
Confidence 334444444455553
No 489
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.34 E-value=5.1e+02 Score=25.65 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHH-hC-CCC
Q 014213 42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA-IHECNLALE-VT-PLY 118 (429)
Q Consensus 42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eA-i~~~~~ALe-ld-P~~ 118 (429)
++........-..++..|+|.+|+..+.+.-.+...... +.+ ....-.++ .++..- ....+.++. +. --+
T Consensus 124 i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~----~~c-~~~L~~~L--~e~~~~i~~~ld~~l~~~~~~Fd 196 (291)
T PF10475_consen 124 IKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKG----YSC-VRHLSSQL--QETLELIEEQLDSDLSKVCQDFD 196 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc----chH-HHHHhHHH--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 355556667778899999999999999888776533221 111 11111222 222221 122222221 11 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213 119 SKALLKRARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG~~deAl~~~~kA 145 (429)
+..|...=.+|..+|+...+.+-+...
T Consensus 197 ~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 197 PDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677888889999999888877555444
No 490
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=28.27 E-value=2.3e+02 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=42.5
Q ss_pred CCCceeEEEEeC-CceEEEEccCCccHHHHHHHHHhhCC-CCCceEEEEECCCCCEEEecC
Q 014213 258 NEPKKTVKLVFG-EDIRVAQLPLNSSLLQLREVISDRFP-SCRAVLIKYRDEEGDLVTITT 316 (429)
Q Consensus 258 ~~~~~~vK~~~~-~DiR~~~i~~~~~~~~L~~~v~~kf~-~~~~~~iky~DedgDliti~~ 316 (429)
....++|+|+.- +....+.|..+.++..|++.+.++.+ ....+++-| +|..|.-..
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L~~~~ 65 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQRIRDNQ 65 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeECCCCC
Confidence 456788888864 46777889999999999999999995 345677777 576665433
No 491
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.68 E-value=3.1e+02 Score=28.64 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213 84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA 126 (429)
Q Consensus 84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA 126 (429)
.+|.-+|..++++ |+.++|...|++|+.+.++.....+-+.
T Consensus 366 ~~h~~RadlL~rL--gr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 366 LYHAARADLLARL--GRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccHHHHHHHHHHh--CChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3888999999999 9999999999999999998776655443
No 492
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=27.19 E-value=1.7e+02 Score=24.26 Aligned_cols=63 Identities=10% Similarity=0.208 Sum_probs=44.9
Q ss_pred CceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEE
Q 014213 270 EDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLF 336 (429)
Q Consensus 270 ~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~ 336 (429)
+-+..+..|..=-..| |.++|...+.+.|.+.|+--=+|++...+....|+.........+|+
T Consensus 9 dHVFhltFPkeWK~~D----I~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSD----IYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp CCEEEEE--TT--HHH----HHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred ceEEEEeCchHhhhhh----HHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 3455666666655555 45689899999999999777999999999999988876544455554
No 493
>PLN02560 enoyl-CoA reductase
Probab=27.07 E-value=1.8e+02 Score=29.54 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=47.3
Q ss_pred eeEEEEeCCceE--EEEccCCccHHHHHHHHHhhCCC--CCceEEEEECCCCCE--EEecChHHHHHHHHhhccCCcEEE
Q 014213 262 KTVKLVFGEDIR--VAQLPLNSSLLQLREVISDRFPS--CRAVLIKYRDEEGDL--VTITTDEELRWAEASAEMQGSVRL 335 (429)
Q Consensus 262 ~~vK~~~~~DiR--~~~i~~~~~~~~L~~~v~~kf~~--~~~~~iky~DedgDl--iti~~~~dl~~a~~~~~~~~~~rl 335 (429)
++||..-|..+. .+.++.+.|..+|...|.++.+. ....+|.|.+.+|.. +.+.|++-|. +..-..| -+|
T Consensus 3 I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~---d~gv~~g-stL 78 (308)
T PLN02560 3 VTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLK---DYGLGDG-GTV 78 (308)
T ss_pred EEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHH---hcCCCCC-ceE
Confidence 345543344442 46689999999999999999753 466888887656642 3344444342 1111122 468
Q ss_pred EEEeeCC
Q 014213 336 FVVGVNP 342 (429)
Q Consensus 336 ~v~e~~~ 342 (429)
+|+++-|
T Consensus 79 y~kDLGp 85 (308)
T PLN02560 79 VFKDLGP 85 (308)
T ss_pred EEEeCCC
Confidence 8887654
No 494
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=26.66 E-value=40 Score=25.87 Aligned_cols=22 Identities=41% Similarity=0.821 Sum_probs=15.2
Q ss_pred ccccCCCCccccceeeeecCCCCC
Q 014213 405 QSKEGGLPHQRGFYRICTGTDKKC 428 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~ 428 (429)
|..-.|-||.|++|| ||- +..|
T Consensus 12 QK~ikgs~~pRsYYr-Ct~-~~~C 33 (59)
T smart00774 12 QKVIKGSPFPRSYYR-CTY-SQGC 33 (59)
T ss_pred cEecCCCcCcceEEe-ccc-cCCC
Confidence 444557799999998 665 4445
No 495
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=26.62 E-value=7e+02 Score=27.71 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=79.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213 57 QKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN 133 (429)
Q Consensus 57 ~~gdyeeAl~~Y~kALel~P~~~~---~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG 133 (429)
......+....|+..|.. |..+. +.+.+-+-+....+....|++....-.+++++.-...+...|++.+.-....|
T Consensus 267 ~s~~~~~kr~~fE~~Ikr-pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKR-PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccc-cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC
Confidence 344556666667777763 43332 23333333333333444499999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhhcc
Q 014213 134 RLDLAFRDVTTVLNK-EPKNIMAAEIAERVKKELEKRGL 171 (429)
Q Consensus 134 ~~deAl~~~~kAL~l-~P~n~~a~~~La~l~~~l~e~~~ 171 (429)
+...|-..+.++.++ .|..+..+..-+...+..+....
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 999999888888877 45666666555566655554433
No 496
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=26.58 E-value=2.5e+02 Score=22.82 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=53.2
Q ss_pred eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEEe
Q 014213 262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVG 339 (429)
Q Consensus 262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~e 339 (429)
++||=.=..|.-+ .+.+...+..|.++|+..+...+--+|-+.+..|..=.++|..-| |-- .--..++|.+-|
T Consensus 3 VtV~q~g~~dl~l-~vnPy~pI~k~K~kI~~~~~~~g~qrLsfQepgg~rqlL~s~~sL--A~y--GiFs~~~i~lle 75 (80)
T cd01811 3 VTVEQTGYSDWIL-RVNPYSPIRKIKEKIRRSRNCSGLQRLSFQEPGGERQLLSSRKSL--ADY--GIFSKTNICLLE 75 (80)
T ss_pred EEeeecCCCceEE-EeCCcchHHHHHHHHHHhhCcccceEEEeecCCcccccccccccH--hhh--cceeccEEEEEe
Confidence 4555543344322 367778999999999999999999999999999999999999887 321 222235666655
No 497
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=26.35 E-value=1.6e+02 Score=23.85 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213 40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL 75 (429)
Q Consensus 40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~ 75 (429)
.++..|......+..++..|+|..|+.....|++..
T Consensus 3 ~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~ 38 (118)
T PF05168_consen 3 DWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKA 38 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 367889999999999999999999998888877753
No 498
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=4.8e+02 Score=26.80 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=69.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 014213 38 TEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT 115 (429)
Q Consensus 38 ~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld 115 (429)
...|++.+.+.+ +...+++.|.|.+|+....-.+.-... +......+|..-+.+|..+ .+..++...++.|--+.
T Consensus 119 kr~fLr~~Le~K-li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~i--rnv~KskaSLTaArt~A 195 (421)
T COG5159 119 KRKFLRLELECK-LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEI--RNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHH--HhhhhhhhHHHHHHHHh
Confidence 445566665555 577899999999999988776654332 1222345677778888888 78888888777665432
Q ss_pred -----CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 014213 116 -----PLYSKALLKR--ARCYEALNRLDLAFRDVTTVLNK 148 (429)
Q Consensus 116 -----P~~~kAl~~r--A~ay~~LG~~deAl~~~~kAL~l 148 (429)
|.-..|-+-+ |..+..-.+|.-|..+|-.|++-
T Consensus 196 ns~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 196 NSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 3322332222 55555666777777777777753
No 499
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=25.83 E-value=2e+02 Score=28.95 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 014213 119 SKALLKRARCYEALN-----RLDLAFRDVTTVLNK 148 (429)
Q Consensus 119 ~kAl~~rA~ay~~LG-----~~deAl~~~~kAL~l 148 (429)
.-|+..+|++|..++ +|++|+..++.++..
T Consensus 176 ~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 176 KAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 347777888888888 899999999999874
No 500
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=25.51 E-value=1.1e+02 Score=18.50 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 014213 126 ARCYEALNRLDLAFRDVTTV 145 (429)
Q Consensus 126 A~ay~~LG~~deAl~~~~kA 145 (429)
=.+|...|++++|++.|++.
T Consensus 7 i~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHccchHHHHHHHHHHH
Confidence 34444455555555444443
Done!