Your job contains 1 sequence.
>014215
MVDDDGWEDNAAGTWAEESCWSQKREQEEELSKEFEKNVALTEESYNPDGNGDSQGTKHE
YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQ
STGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEG
CKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSC
KFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPV
ADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKA
ELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGD
GKSPVCTW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014215
(428 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 350 3.9e-43 3
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 283 7.1e-34 2
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 245 4.1e-31 2
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 248 2.2e-30 2
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 248 2.5e-29 2
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 219 2.2e-28 2
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 237 6.6e-28 2
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 266 1.8e-26 2
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 155 1.7e-10 1
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 97 6.0e-06 2
WB|WBGene00009537 - symbol:ccch-2 species:6239 "Caenorhab... 115 0.00011 1
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 99 0.00020 1
UNIPROTKB|E1C259 - symbol:ZC3H6 "Uncharacterized protein"... 124 0.00024 2
WB|WBGene00013319 - symbol:ccch-5 species:6239 "Caenorhab... 113 0.00027 1
UNIPROTKB|Q17QY2 - symbol:ZC3H8 "Zinc finger CCCH-type co... 117 0.00032 1
UNIPROTKB|F1SUA1 - symbol:ZC3H8 "Uncharacterized protein"... 117 0.00033 1
MGI|MGI:1926001 - symbol:Zc3h6 "zinc finger CCCH type con... 124 0.00040 1
ZFIN|ZDB-GENE-990415-180 - symbol:cpsf4 "cleavage and pol... 109 0.00042 2
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 115 0.00061 1
WB|WBGene00021924 - symbol:Y55F3AM.6 species:6239 "Caenor... 83 0.00066 4
UNIPROTKB|E2RFS8 - symbol:ZC3H8 "Uncharacterized protein"... 116 0.00068 1
POMBASE|SPAP8A3.06 - symbol:SPAP8A3.06 "U2AF small subuni... 98 0.00070 2
MGI|MGI:1930128 - symbol:Zc3h8 "zinc finger CCCH type con... 114 0.00071 1
RGD|1310458 - symbol:Zc3h8 "zinc finger CCCH type contain... 113 0.00075 2
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 350 (128.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 68/136 (50%), Positives = 84/136 (61%)
Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
C FY RT CK G +C+F+H + + KE GG L GLI CKY+
Sbjct: 116 CSFYMRTGSCKFGSSCKFNHPLARKFQ-IARDNKVREKEDDGGKL----GLIDCKYYFRT 170
Query: 232 GGCKYGNSCKFSHSKEKPQTYIKKSEKAS-PELNFLGLPIRVHEIECPFYMRNGSCAYGV 290
GGCKYG +C+F+H+ I KS AS PELNFLGLP+R E+ECP+YMRNGSC YG
Sbjct: 171 GGCKYGETCRFNHT-------IPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGA 223
Query: 291 DCRFNHPDPVADEGSD 306
+C+FNHPDP G+D
Sbjct: 224 ECKFNHPDPTTIGGTD 239
Score = 324 (119.1 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 74/177 (41%), Positives = 100/177 (56%)
Query: 43 EESYNPDGNGDSQG-TKHE----YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQG 97
EE + DG G G +++E YP RP AEDC FY+RTG CKFG CKFNHP+ FQ
Sbjct: 84 EEEEDRDGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQI 143
Query: 98 LKENE--RGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV-LNAFNLPI 154
++N+ G LG I CK+Y TGGCK+GE CRF H+I KS ++ + LN LP+
Sbjct: 144 ARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPL 203
Query: 155 KLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSH---STEKSENPLPFSGANGM 208
+ GE ++C +Y R CK+G C+F+H +T + F G NG+
Sbjct: 204 R---PGE--------VECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGV 249
Score = 160 (61.4 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 51/172 (29%), Positives = 78/172 (45%)
Query: 143 SKSVLN--AFNLPIKLESKGEGLMEKTVQIQCKFYQRTE---GCKHGEACRFSHSTEKSE 197
S S LN A +L KL K GL E T + K +E G + E+ E
Sbjct: 29 SLSDLNHAAEDLSDKL--KNVGLNEVTKEQSEKMMSVSESNGGLDSNAVVTINQEEEEEE 86
Query: 198 NPLPFSG-ANGMKESKGGSLVEMT-GLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKK 255
G +G E++ ++ + G C +++ G CK+G+SCKF+H + + I +
Sbjct: 87 EDRDGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLAR-KFQIAR 145
Query: 256 SEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDP 307
K + + G ++ I+C +Y R G C YG CRFNH P + S P
Sbjct: 146 DNKVREKEDDGG---KLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAP 194
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 60 EYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKE---NERGGFVGQHLGQIQC 116
E+P RP +C +Y++TG CKF F CK++HP + L N++G + Q C
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHP-KNRLPKLPPYALNDKG--LPLRPDQNIC 398
Query: 117 KFYQSTGGCKHGEACRFKHSIE---KSEVSKSVL 147
+Y G CK G ACRF HS++ +E S++++
Sbjct: 399 TYYSRYGICKFGPACRFDHSVQPPYSTESSQAIV 432
Score = 135 (52.6 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 31/89 (34%), Positives = 43/89 (48%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASP-ELNFLGLPIRVHEIECPFYMRN 283
C Y++ G CK+ +CK+ H K + K P LN GLP+R + C +Y R
Sbjct: 352 CSYYMKTGDCKFKFNCKYHHPKNR-------LPKLPPYALNDKGLPLRPDQNICTYYSRY 404
Query: 284 GSCAYGVDCRFNHP--DPVADEGSDPFNE 310
G C +G CRF+H P + E S E
Sbjct: 405 GICKFGPACRFDHSVQPPYSTESSQAIVE 433
Score = 110 (43.8 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 384 FNEFPERPGEPLCDYFMKTGNCKYRSACKFHHP 416
F P RPGE C Y+M+ G+CKY + CKF+HP
Sbjct: 198 FLGLPLRPGEVECPYYMRNGSCKYGAECKFNHP 230
Score = 80 (33.2 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 269 PIRVHEIECPFYMRNGSCAYGVDCRFNHP 297
P R + EC +YM+ G C + +C+++HP
Sbjct: 344 PERPDQPECSYYMKTGDCKFKFNCKYHHP 372
Score = 79 (32.9 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHH 415
P RP + +C Y+ + G CK+ AC+F H
Sbjct: 390 PLRPDQNICTYYSRYGICKFGPACRFDH 417
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 283 (104.7 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 74/255 (29%), Positives = 108/255 (42%)
Query: 50 GNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQ 109
G+ D+ G YP R DC +Y+RTG C+FG C+FNHP +G + +
Sbjct: 28 GSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYP-E 86
Query: 110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV-LNAFNLPIKLESKGEGLMEKTV 168
+GQ +C+FY TG CK G C+F H K+ + SV +N + P++
Sbjct: 87 RIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNED--------- 137
Query: 169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYH 228
C ++ R CK G C+F+H +S N L S S SL +
Sbjct: 138 --DCSYFLRIGQCKFGGTCKFNHPQTQSTN-LMVSVRGSPVYSALQSLTGQPSYSWSRTS 194
Query: 229 LSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPI------RVHEIECPFYMR 282
A + + F+ + S L F LP R + EC FYM+
Sbjct: 195 FVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFYALPRENVFPERPGQPECQFYMK 254
Query: 283 NGSCAYGVDCRFNHP 297
G C +G C+F+HP
Sbjct: 255 TGDCKFGTVCKFHHP 269
Score = 259 (96.2 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 74/248 (29%), Positives = 110/248 (44%)
Query: 58 KHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL--GQIQ 115
K EYP R +C FYL+TG CKFG CKF+HP R G+ + + L +
Sbjct: 81 KGEYPERIGQPECEFYLKTGTCKFGVTCKFHHP-RNK-AGIDGSVSVNVLSYPLRPNEDD 138
Query: 116 CKFYQSTGGCKHGEACRFKH-SIEKSEVSKSVLNA--FNLPIKLESKGEGLMEKTVQI-Q 171
C ++ G CK G C+F H + + + SV + ++ L + +T +
Sbjct: 139 CSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQPSYSWSRTSFVAN 198
Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
Q G G S S N +P G + E G C++++
Sbjct: 199 PPRLQDPSGFASGSQGGLFSSGFHSGNSVPL-GFYALPREN--VFPERPGQPECQFYMKT 255
Query: 232 GGCKYGNSCKFSHSKEKPQTYIKKSEKASPE--LNFLGLPIRVHEIECPFYMRNGSCAYG 289
G CK+G CKF H +++ QT P+ L+ +GLP+R E C FY R G C +G
Sbjct: 256 GDCKFGTVCKFHHPRDR-QT-------PPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFG 307
Query: 290 VDCRFNHP 297
C+F+HP
Sbjct: 308 PSCKFDHP 315
Score = 152 (58.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 385 NEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVC 426
N FPERPG+P C ++MKTG+CK+ + CKFHHP++ P C
Sbjct: 238 NVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDC 279
Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 386 EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDG 421
E+PER G+P C++++KTG CK+ CKFHHP+N G
Sbjct: 83 EYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAG 118
Score = 101 (40.6 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHHP 416
P RPGEPLC ++ + G CK+ +CKF HP
Sbjct: 287 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 315
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 245 (91.3 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 50/146 (34%), Positives = 75/146 (51%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQ 120
YP RP DC +Y+RTG C+FG C+FNHP + RG + + +GQ +C++Y
Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGEYP-ERIGQPECEYYL 95
Query: 121 STGGCKHGEACRFKHSIEKSEVSKSV-LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTE 179
TG CK G C+F H K+ ++ V LN P++ ++ C ++ RT
Sbjct: 96 KTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN-----------EVDCAYFLRTG 144
Query: 180 GCKHGEACRFSHSTEKSENPL-PFSG 204
CK G C+F+H + N + P SG
Sbjct: 145 HCKFGGTCKFNHPQPQPTNMMVPTSG 170
Score = 237 (88.5 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 57/163 (34%), Positives = 83/163 (50%)
Query: 165 EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224
E+ + C +Y RT C+ G CRF+H ++ L + A M+ G E G
Sbjct: 39 ERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRE---LVIATAR-MR----GEYPERIGQPE 90
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
C+Y+L G CK+G +CKF H + K + S LN LG P+R +E++C +++R G
Sbjct: 91 CEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVS------LNMLGYPLRSNEVDCAYFLRTG 144
Query: 285 SCAYGVDCRFNHPDP------VADEG--SDPFNEASDPASRSW 319
C +G C+FNHP P V G S P++ AS AS W
Sbjct: 145 HCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRW 187
Score = 158 (60.7 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 60 EYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL--GQIQCK 117
EYP R +C +YL+TG CKFG CKF+HP R G+ +G L ++ C
Sbjct: 81 EYPERIGQPECEYYLKTGTCKFGVTCKFHHP-RNK-AGIAGRVSLNMLGYPLRSNEVDCA 138
Query: 118 FYQSTGGCKHGEACRFKH 135
++ TG CK G C+F H
Sbjct: 139 YFLRTGHCKFGGTCKFNH 156
Score = 157 (60.3 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 45/153 (29%), Positives = 68/153 (44%)
Query: 176 QRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCK 235
Q+ E + G + S S + +P G + E G C++++ G CK
Sbjct: 233 QQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPREN--VFPERPGQPECQFYMKTGDCK 290
Query: 236 YGNSCKFSHSKEKPQTYIKKSEKASPE--LNFLGLPIRVHEIECPFYMRNGSCAYGVDCR 293
+G CKF H +++ + P+ L+ +GLP+R E C FY R G C +G C+
Sbjct: 291 FGTVCKFHHPRDR--------QAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCK 342
Query: 294 FNHP------DPVADEGSDPFNEASDPASRSWS 320
F+HP D A E +D E S SR S
Sbjct: 343 FDHPMRVFTYDNTASE-TDEVVETSTGKSRRLS 374
Score = 154 (59.3 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 385 NEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVC 426
N FPERPG+P C ++MKTG+CK+ + CKFHHP++ P C
Sbjct: 269 NVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDC 310
Score = 153 (58.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 38/97 (39%), Positives = 49/97 (50%)
Query: 46 YNPDGN---GDSQGTKHE--YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKE 100
YNP + G E +P RP +C FY++TG CKFG CKF+HP R D Q
Sbjct: 251 YNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP-R-DRQAPPP 308
Query: 101 NERGGFVGQHL--GQIQCKFYQSTGGCKHGEACRFKH 135
+ +G L G+ C FY G CK G +C+F H
Sbjct: 309 DCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH 345
Score = 150 (57.9 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 214 GSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVH 273
GS E G C Y++ G C++G++C+F+H +++ + + + E P R+
Sbjct: 35 GSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRE--LVIATARMRGEY-----PERIG 87
Query: 274 EIECPFYMRNGSCAYGVDCRFNHP 297
+ EC +Y++ G+C +GV C+F+HP
Sbjct: 88 QPECEYYLKTGTCKFGVTCKFHHP 111
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 379 STYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDG 421
+T E+PER G+P C+Y++KTG CK+ CKFHHP+N G
Sbjct: 74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAG 116
Score = 126 (49.4 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 356 PQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHH 415
P + ++ A+ + ++D + + +PERPGEP C Y+++TG C++ S C+F+H
Sbjct: 8 PMSSLSPLMNQDAMWQMNLSSDETM--ETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNH 65
Query: 416 PKN 418
P++
Sbjct: 66 PRD 68
Score = 118 (46.6 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 102 ERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGE 161
E G + + G+ C +Y TG C+ G CRF H ++ V + A +GE
Sbjct: 33 ETGSYP-ERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELV---IATA-------RMRGE 81
Query: 162 GLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKS 196
E+ Q +C++Y +T CK G C+F H K+
Sbjct: 82 -YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKA 115
Score = 115 (45.5 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 165 EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224
E+ Q +C+FY +T CK G C+F H ++ P P + + S G L L
Sbjct: 273 ERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPP-P----DCLLSSIGLPLRPGEPL-- 325
Query: 225 CKYHLSAGGCKYGNSCKFSH 244
C ++ G CK+G SCKF H
Sbjct: 326 CVFYTRYGICKFGPSCKFDH 345
Score = 101 (40.6 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHHP 416
P RPGEPLC ++ + G CK+ +CKF HP
Sbjct: 318 PLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
Score = 98 (39.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 387 FPERPGEPLCDYFMKTGNCKYRSACKFHHPK 417
+P R E C YF++TG+CK+ CKF+HP+
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQ 158
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 248 (92.4 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 76/256 (29%), Positives = 113/256 (44%)
Query: 60 EYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFY 119
EYP RP DCP+Y++T CK+G CKFNHP R + E + + + + C FY
Sbjct: 221 EYPERPGEPDCPYYIKTQRCKYGSKCKFNHP-REEAAVSVETQDS--LPERPSEPMCTFY 277
Query: 120 QSTGGCKHGEACRFKH--SIE----KSEVSKSV-L----NAFNLPI-----KLESKGEGL 163
TG CK G +C+F H I+ ++ SV L +A N P L +GL
Sbjct: 278 MKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGL 337
Query: 164 MEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLI 223
++ ++ C FY +T CK+G CR++H + P +G N SLV
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQA-AGVNY-------SLVS----- 384
Query: 224 GCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGL--PIRVHEIECPFYM 281
N+ + P T ++ P L + P R + EC +YM
Sbjct: 385 -------------SNTANLNLGLVTPATSFYQT-LTQPTLGVISATYPQRPGQSECDYYM 430
Query: 282 RNGSCAYGVDCRFNHP 297
+ G C +G C+F+HP
Sbjct: 431 KTGECKFGERCKFHHP 446
Score = 238 (88.8 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 62/206 (30%), Positives = 95/206 (46%)
Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTV 168
Q G+ C Y T CK GE+CRF H I E + + P+ E E+
Sbjct: 173 QRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPE--GGIPDWKEAPVV---PNEEYPERPG 227
Query: 169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM-TGL----I 223
+ C +Y +T+ CK+G C+F+H E++ + + + S+ M TG +
Sbjct: 228 EPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGL 287
Query: 224 GCKYH------LSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPEL--NFLGLPIRVHEI 275
CK+H L + G+S + +P +P L N GLP+R E+
Sbjct: 288 SCKFHHPKDIQLPSSSQDIGSSVGLT---SEPDATNNPHVTFTPALYHNSKGLPVRSGEV 344
Query: 276 ECPFYMRNGSCAYGVDCRFNHPDPVA 301
+CPFY++ GSC YG CR+NHP+ A
Sbjct: 345 DCPFYLKTGSCKYGATCRYNHPERTA 370
Score = 222 (83.2 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 65/219 (29%), Positives = 102/219 (46%)
Query: 55 QGTKHE--YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVG---- 108
+ T H YP R +DC Y++T CKFG C+F+HP+ G+ + + V
Sbjct: 163 ESTSHLPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEY 222
Query: 109 -QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKT 167
+ G+ C +Y T CK+G C+F H E++ VS +E++ + L E+
Sbjct: 223 PERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVS------------VETQ-DSLPERP 269
Query: 168 VQIQCKFYQRTEGCKHGEACRFSHSTE----------------KSE-----NP-LPFSGA 205
+ C FY +T CK G +C+F H + SE NP + F+ A
Sbjct: 270 SEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPA 329
Query: 206 NGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSH 244
SKG L +G + C ++L G CKYG +C+++H
Sbjct: 330 L-YHNSKG--LPVRSGEVDCPFYLKTGSCKYGATCRYNH 365
Score = 220 (82.5 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 60/198 (30%), Positives = 90/198 (45%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
C +++ CK+G SC+F H P+ I ++A P + P R E +CP+Y++
Sbjct: 180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEA-PVVPNEEYPERPGEPDCPYYIKTQ 238
Query: 285 SCAYGVDCRFNHPDP---VADEGSDPFNEA-SDPASRSWSPDIISRKTVPNLDNHSFHPH 340
C YG C+FNHP V+ E D E S+P + + K L HP
Sbjct: 239 RCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMK---TGKCKFGLSCKFHHPK 295
Query: 341 WM-LKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYF 399
+ L S + SV L A N T + YH P R GE C ++
Sbjct: 296 DIQLPSSSQDIGSSV------GLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPFY 349
Query: 400 MKTGNCKYRSACKFHHPK 417
+KTG+CKY + C+++HP+
Sbjct: 350 LKTGSCKYGATCRYNHPE 367
Score = 183 (69.5 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKS-EKASPELNFLGLPIRVHEIECPFYMRN 283
C Y++ G CK+G CKF H ++ K++ ++ + +L+ G P R + CP+YM+
Sbjct: 426 CDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKT 485
Query: 284 GSCAYGVDCRFNHPDP 299
G+C YG C+F+HP P
Sbjct: 486 GTCKYGATCKFDHPPP 501
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/96 (34%), Positives = 48/96 (50%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKE-----NERGGFVG--QHLGQ 113
YP RP +C +Y++TG CKFG CKF+HP K+ N + G + G
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 114 IQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNA 149
+ C +Y TG CK+G C+F H ++K+ A
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHPPPGEVMAKTTSEA 512
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEK-SEVSKSVLNAFNLPIKLESKGEGLMEKT 167
Q GQ +C +Y TG CK GE C+F H ++ S ++K N+ + L G +
Sbjct: 419 QRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLA----GYPRRE 474
Query: 168 VQIQCKFYQRTEGCKHGEACRFSH 191
+ C +Y +T CK+G C+F H
Sbjct: 475 GALNCPYYMKTGTCKYGATCKFDH 498
Score = 137 (53.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 385 NEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKN 418
+ PERP EP+C ++MKTG CK+ +CKFHHPK+
Sbjct: 263 DSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKD 296
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 169 QIQCKFYQRTEGCKHGEACRFSHSTEK-SENPLPFSGANGMKESKGGSLVEMTGLIGCKY 227
Q +C +Y +T CK GE C+F H ++ S +K S G G + C Y
Sbjct: 423 QSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG-YPRREGALNCPY 481
Query: 228 HLSAGGCKYGNSCKFSH 244
++ G CKYG +CKF H
Sbjct: 482 YMKTGTCKYGATCKFDH 498
Score = 133 (51.9 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 27/65 (41%), Positives = 35/65 (53%)
Query: 352 GSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSAC 411
G V P L+ P LG ++ T +P+RPG+ CDY+MKTG CK+ C
Sbjct: 393 GLVTPATSFYQTLTQPTLGVISAT-----------YPQRPGQSECDYYMKTGECKFGERC 441
Query: 412 KFHHP 416
KFHHP
Sbjct: 442 KFHHP 446
Score = 111 (44.1 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 387 FPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGD 420
+P R G C Y+MKTG CKY + CKF HP G+
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHPPPGE 503
Score = 91 (37.1 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 252 YIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEA 311
Y K K + P R E +C YM+ +C +G CRF+HP V + G + EA
Sbjct: 155 YFTKRPKLESTSHLPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEA 214
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 248 (92.4 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 65/212 (30%), Positives = 103/212 (48%)
Query: 160 GEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM 219
GE E+ + C +Y RT C +G CRF+H ++ G G + G+L E
Sbjct: 48 GESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGA---VIGGVRG----EAGALPER 100
Query: 220 TGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPF 279
G C++ + G CK+G SCK+ H P+ A L++LG P+R E EC +
Sbjct: 101 MGHPVCQHFMRTGTCKFGASCKYHH----PRQGGGGGSVAPVSLSYLGYPLRPGEKECSY 156
Query: 280 YMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTV-PNLDNHSF- 337
Y+R G C +G+ CRFNHP P+A +G + P + P + +T+ P L + S
Sbjct: 157 YLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQ---PQL---QTIYPTLQSQSIP 210
Query: 338 --HPHWMLKSKFNSLQGSVYPQAKAELPLSSP 367
+ ++ ++ + L GS Y Q+ P+ P
Sbjct: 211 SSQQYGLVLTRPSFLTGS-YLQSPYGPPMVLP 241
Score = 226 (84.6 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 52/143 (36%), Positives = 70/143 (48%)
Query: 50 GNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPV-RGDFQGLKENERGGFVG 108
G G G YP RP DC +YLRTG C +G C+FNHP RG G E G +
Sbjct: 40 GGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGA-LP 98
Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTV 168
+ +G C+ + TG CK G +C++ H + SV P+ L G L +
Sbjct: 99 ERMGHPVCQHFMRTGTCKFGASCKYHHP-RQGGGGGSVA-----PVSLSYLGYPL--RPG 150
Query: 169 QIQCKFYQRTEGCKHGEACRFSH 191
+ +C +Y RT CK G CRF+H
Sbjct: 151 EKECSYYLRTGQCKFGLTCRFNH 173
Score = 176 (67.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 47/157 (29%), Positives = 67/157 (42%)
Query: 1 MVDDDGWEDNAAGTWAEESCWSQXXXXXXXXXXXXXXNVALTEESYNPDGNGDSQGTKHE 60
MV GW A A S +Q + + T + S T E
Sbjct: 244 MVPYSGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKE 303
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL--GQIQCKF 118
+P RP +C +++RTG CKFG C+++HPV D K +G L G QC
Sbjct: 304 FPQRPDQPECQYFMRTGDCKFGSSCRYHHPV--DAVPPKTGIVLSSIGLPLRPGVAQCTH 361
Query: 119 YQSTGGCKHGEACRFKHSIEKS-EVSKSVLNAFNLPI 154
+ G CK G AC+F HS+ S S S + ++P+
Sbjct: 362 FAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPV 398
Score = 155 (59.6 bits), Expect = 3.8e-17, Sum P(3) = 3.8e-17
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 52 GDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL 111
G +G P R C ++RTG CKFG CK++HP +G G ++G L
Sbjct: 88 GGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPL 147
Query: 112 --GQIQCKFYQSTGGCKHGEACRFKHSI 137
G+ +C +Y TG CK G CRF H +
Sbjct: 148 RPGEKECSYYLRTGQCKFGLTCRFNHPV 175
Score = 139 (54.0 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 345 SKFNSLQGSV--YPQAKAELPLSSPALGNLTK-----TADTSTYHQF-------NEFPER 390
S +N Q S+ P + + S ++ LT TA T TY EFP+R
Sbjct: 248 SGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQR 307
Query: 391 PGEPLCDYFMKTGNCKYRSACKFHHP 416
P +P C YFM+TG+CK+ S+C++HHP
Sbjct: 308 PDQPECQYFMRTGDCKFGSSCRYHHP 333
Score = 135 (52.6 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPV 425
PER G P+C +FM+TG CK+ ++CK+HHP+ G G V
Sbjct: 98 PERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSV 135
Score = 129 (50.5 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQG 97
YP RP ++C +YLRTG CKFG C+FNHPV QG
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQG 181
Score = 126 (49.4 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
C+Y + G CK+G+SC++ H P + K L+ +GLP+R +C + ++G
Sbjct: 313 CQYFMRTGDCKFGSSCRYHH----PVDAVPP--KTGIVLSSIGLPLRPGVAQCTHFAQHG 366
Query: 285 SCAYGVDCRFNH 296
C +G C+F+H
Sbjct: 367 ICKFGPACKFDH 378
Score = 117 (46.2 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYH 228
Q +C+++ RT CK G +CR+ H + P P +G + S G L G+ C +
Sbjct: 310 QPECQYFMRTGDCKFGSSCRYHHPVDAV--P-PKTGI--VLSSIGLPL--RPGVAQCTHF 362
Query: 229 LSAGGCKYGNSCKFSHSKEKPQTY 252
G CK+G +CKF HS +Y
Sbjct: 363 AQHGICKFGPACKFDHSMSSSLSY 386
Score = 88 (36.0 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 269 PIRVHEIECPFYMRNGSCAYGVDCRFNHP 297
P R + EC ++MR G C +G CR++HP
Sbjct: 305 PQRPDQPECQYFMRTGDCKFGSSCRYHHP 333
Score = 79 (32.9 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHH 415
P RPG C +F + G CK+ ACKF H
Sbjct: 351 PLRPGVAQCTHFAQHGICKFGPACKFDH 378
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 219 (82.2 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 47/133 (35%), Positives = 69/133 (51%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERG-GFVGQHLGQIQCKFY 119
YP RP A DC +Y+RTG C +G C++NHP R D ++ R G + G+ C+FY
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP-R-DRASVEATVRATGQYPERFGEPPCQFY 99
Query: 120 QSTGGCKHGEACRFKHSIEKS-EVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT 178
TG CK G +C+F H +S LN + P++ +G+ +C +Y +T
Sbjct: 100 LKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVR---EGDN--------ECSYYLKT 148
Query: 179 EGCKHGEACRFSH 191
CK G C+F H
Sbjct: 149 GQCKFGITCKFHH 161
Score = 214 (80.4 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 48/153 (31%), Positives = 70/153 (45%)
Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
C +Y RT C +G CR++H +++ G E G C+++L
Sbjct: 51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRAT--------GQYPERFGEPPCQFYLKT 102
Query: 232 GGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVD 291
G CK+G SCKF H K S P LN G P+R + EC +Y++ G C +G+
Sbjct: 103 GTCKFGASCKFHHPKNAGG-----SMSHVP-LNIYGYPVREGDNECSYYLKTGQCKFGIT 156
Query: 292 CRFNHPDPVADEGSDPFNEASD--PASRSWSPD 322
C+F+HP P P A P+ +S PD
Sbjct: 157 CKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPD 189
Score = 165 (63.1 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 218 EMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIEC 277
E G C+Y+L G CK+G SCKF H +++ +A+ L+ +GLP+R C
Sbjct: 288 ERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPP------RANCVLSPIGLPLRPGVQRC 341
Query: 278 PFYMRNGSCAYGVDCRFNHP 297
FY++NG C +G C+F+HP
Sbjct: 342 TFYVQNGFCKFGSTCKFDHP 361
Score = 160 (61.4 bits), Expect = 3.9e-19, Sum P(3) = 3.9e-19
Identities = 35/79 (44%), Positives = 43/79 (54%)
Query: 60 EYPSRPFAED-CPFYLRTGYCKFGFCCKFNHPVR--GDFQGLKENERGGFVGQHLGQIQC 116
+YP R F E C FYL+TG CKFG CKF+HP G + N G V + G +C
Sbjct: 86 QYPER-FGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVRE--GDNEC 142
Query: 117 KFYQSTGGCKHGEACRFKH 135
+Y TG CK G C+F H
Sbjct: 143 SYYLKTGQCKFGITCKFHH 161
Score = 154 (59.3 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 35/96 (36%), Positives = 49/96 (51%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL--GQIQCKF 118
+P RP +C +YL+TG CKFG CKF+HP R D + N +G L G +C F
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHP-R-DRVPPRANCVLSPIGLPLRPGVQRCTF 343
Query: 119 YQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPI 154
Y G CK G C+F H + + S + + P+
Sbjct: 344 YVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPV 379
Score = 152 (58.6 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 361 ELPLSSPALGNL--TKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKN 418
+L ++P+L + + ++ T + FPERPGEP C Y++KTG+CK+ ++CKFHHP++
Sbjct: 258 QLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRD 317
Score = 147 (56.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 215 SLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHE 274
S E G C Y++ G C YGN C+++H +++ ++ + +A+ + P R E
Sbjct: 41 SYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRAS--VEATVRATGQY-----PERFGE 93
Query: 275 IECPFYMRNGSCAYGVDCRFNHP 297
C FY++ G+C +G C+F+HP
Sbjct: 94 PPCQFYLKTGTCKFGASCKFHHP 116
Score = 144 (55.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 379 STYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDG 421
+T ++PER GEP C +++KTG CK+ ++CKFHHPKN G
Sbjct: 79 ATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGG 121
Score = 122 (48.0 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 28/99 (28%), Positives = 51/99 (51%)
Query: 146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGA 205
V + + P + K + E+ + +C++Y +T CK G +C+F H ++ +P A
Sbjct: 269 VYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDR----VP-PRA 323
Query: 206 NGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSH 244
N + G L G+ C +++ G CK+G++CKF H
Sbjct: 324 NCVLSPIGLPL--RPGVQRCTFYVQNGFCKFGSTCKFDH 360
Score = 109 (43.4 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 387 FPERPGEPLCDYFMKTGNCKYRSACKFHHPK 417
+P R G+ C Y++KTG CK+ CKFHHP+
Sbjct: 133 YPVREGDNECSYYLKTGQCKFGITCKFHHPQ 163
Score = 108 (43.1 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHP 90
YP R +C +YL+TG CKFG CKF+HP
Sbjct: 133 YPVREGDNECSYYLKTGQCKFGITCKFHHP 162
Score = 92 (37.4 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 236 YGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFN 295
YG + S + P Y S P R E EC +Y++ G C +G C+F+
Sbjct: 254 YGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFH 313
Query: 296 HP 297
HP
Sbjct: 314 HP 315
Score = 89 (36.4 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHHP 416
P RPG C ++++ G CK+ S CKF HP
Sbjct: 333 PLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 237 (88.5 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 54/173 (31%), Positives = 86/173 (49%)
Query: 160 GEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM 219
GE E+ + C +Y RT C +G CRF+H N P G G++ ++ G E
Sbjct: 45 GETFPERPDEPDCIYYLRTGVCGYGSRCRFNHP----RNRAPVLG--GLR-TEAGEFPER 97
Query: 220 TGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASP-ELNFLGLPIRVHEIECP 278
G C++ + G CK+G SCK+ H ++ + +P LN++G P+R E EC
Sbjct: 98 MGQPVCQHFMRTGTCKFGASCKYHHPRQGGG-----GDSVTPVSLNYMGFPLRPGEKECS 152
Query: 279 FYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPN 331
++MR G C +G CR++HP P + + A + P + S+ TVP+
Sbjct: 153 YFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQ-TVPS 204
Score = 213 (80.0 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 48/137 (35%), Positives = 67/137 (48%)
Query: 56 GTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPV-RGDFQGLKENERGGFVGQHLGQI 114
G +P RP DC +YLRTG C +G C+FNHP R G E G F + +GQ
Sbjct: 43 GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFP-ERMGQP 101
Query: 115 QCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKF 174
C+ + TG CK G +C++ H + SV P+ L G L + + +C +
Sbjct: 102 VCQHFMRTGTCKFGASCKYHHP-RQGGGGDSVT-----PVSLNYMGFPL--RPGEKECSY 153
Query: 175 YQRTEGCKHGEACRFSH 191
+ RT CK G CR+ H
Sbjct: 154 FMRTGQCKFGSTCRYHH 170
Score = 172 (65.6 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 43/147 (29%), Positives = 61/147 (41%)
Query: 1 MVDDDGWEDNAAGTWAEESCWSQXXXXXXXXXXXXXXNVALTEESYNPDGNGDSQGTKHE 60
MV GW A A S +Q + + P G S +
Sbjct: 238 MVPYSGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSN-KEQT 296
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL--GQIQCKF 118
+P RP +C +++RTG CKFG C+F+HP+ E +G L G + C
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEA---ASPEASTLSHIGLPLRPGAVPCTH 353
Query: 119 YQSTGGCKHGEACRFKHSIEKSEVSKS 145
+ G CK G AC+F HS+ S +S S
Sbjct: 354 FAQHGICKFGPACKFDHSLGSSSLSYS 380
Score = 148 (57.2 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 60 EYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHL--GQIQCK 117
E+P R C ++RTG CKFG CK++HP +G ++G L G+ +C
Sbjct: 93 EFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECS 152
Query: 118 FYQSTGGCKHGEACRFKHSI 137
++ TG CK G CR+ H +
Sbjct: 153 YFMRTGQCKFGSTCRYHHPV 172
Score = 148 (57.2 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 386 EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPV 425
EFPER G+P+C +FM+TG CK+ ++CK+HHP+ G G V
Sbjct: 93 EFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSV 132
Score = 139 (54.0 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 363 PLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHP 416
PLS A + + T ++ FP+RP +P C YFM+TG+CK+ ++C+FHHP
Sbjct: 273 PLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHP 326
Score = 139 (54.0 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
C+Y + G CK+G SC+F H E S +AS L+ +GLP+R + C + ++G
Sbjct: 306 CQYFMRTGDCKFGTSCRFHHPMEAA------SPEAST-LSHIGLPLRPGAVPCTHFAQHG 358
Query: 285 SCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSP 321
C +G C+F+H GS + + P+S + P
Sbjct: 359 ICKFGPACKFDH-----SLGSSSLSYSPSPSSLTDMP 390
Score = 125 (49.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 113 QIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQC 172
Q +C+++ TG CK G +CRF H +E + S L+ LP++ G + C
Sbjct: 303 QPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPLR-----PGA------VPC 351
Query: 173 KFYQRTEGCKHGEACRFSHSTEKSE---NPLPFS 203
+ + CK G AC+F HS S +P P S
Sbjct: 352 THFAQHGICKFGPACKFDHSLGSSSLSYSPSPSS 385
Score = 125 (49.1 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 387 FPERPGEPLCDYFMKTGNCKYRSACKFHHP 416
FP RPGE C YFM+TG CK+ S C++HHP
Sbjct: 142 FPLRPGEKECSYFMRTGQCKFGSTCRYHHP 171
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 387 FPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPV 425
FPERP EP C Y+++TG C Y S C+F+HP+N ++PV
Sbjct: 48 FPERPDEPDCIYYLRTGVCGYGSRCRFNHPRN---RAPV 83
Score = 118 (46.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 156 LESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGS 215
+ +K + ++ Q +C+++ RT CK G +CRF H P+ + S G
Sbjct: 290 VSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHH-------PMEAASPEASTLSHIG- 341
Query: 216 LVEMTGLIGCKYHLSAGGCKYGNSCKFSHS 245
L G + C + G CK+G +CKF HS
Sbjct: 342 LPLRPGAVPCTHFAQHGICKFGPACKFDHS 371
Score = 108 (43.1 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENER 103
+P RP ++C +++RTG CKFG C+++HPV Q + ++
Sbjct: 142 FPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQ 184
Score = 95 (38.5 bits), Expect = 8.6e-25, Sum P(3) = 8.6e-25
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 269 PIRVHEIECPFYMRNGSCAYGVDCRFNHP-DPVADEGS 305
P R + EC ++MR G C +G CRF+HP + + E S
Sbjct: 298 PQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS 335
Score = 78 (32.5 bits), Expect = 8.6e-25, Sum P(3) = 8.6e-25
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHH 415
P RPG C +F + G CK+ ACKF H
Sbjct: 343 PLRPGAVPCTHFAQHGICKFGPACKFDH 370
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 266 (98.7 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 68/212 (32%), Positives = 101/212 (47%)
Query: 216 LVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPEL-NFLGLPIRVHE 274
L E G C+Y L G CKYG +CK+ H K++ A P + N +GLP+R+ E
Sbjct: 87 LPERIGQPDCEYFLKTGACKYGPTCKYHHPKDR--------NGAQPVMFNVIGLPMRLGE 138
Query: 275 IECPFYMRNGSCAYGVDCRFNHPDPVADEG-SDPFNEASDPASR-SWSPDIISRKTVPNL 332
CP+Y+R G+C +GV C+F+HP P D G S + +S PA+ ++ + T L
Sbjct: 139 KPCPYYLRTGTCRFGVACKFHHPQP--DNGHSTAYGMSSFPAADLRYASGLTMMSTYGTL 196
Query: 333 DNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTK-------TADTSTYHQFN 385
P + + QG + PQ A +S ++ N+ +A + N
Sbjct: 197 PRPQV-PQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSSASMAMAVALN 255
Query: 386 E-FPERPGEPLCDYFMKTGNCKYRSACKFHHP 416
E +P C +FM TG CKY CK+ HP
Sbjct: 256 RGLSESSDQPECRFFMNTGTCKYGDDCKYSHP 287
Score = 232 (86.7 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 46/133 (34%), Positives = 67/133 (50%)
Query: 61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVR--GDFQGLKENERGGFVGQHLGQIQCKF 118
YP RP DC FYLRTG C +G C++NHP D KE + + +GQ C++
Sbjct: 44 YPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEE-----LPERIGQPDCEY 98
Query: 119 YQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT 178
+ TG CK+G C++ H +++ + N LP++L K C +Y RT
Sbjct: 99 FLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEK-----------PCPYYLRT 147
Query: 179 EGCKHGEACRFSH 191
C+ G AC+F H
Sbjct: 148 GTCRFGVACKFHH 160
Score = 159 (61.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 58 KHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPV-RGDFQGLKENERGGFVGQHLGQIQC 116
K E P R DC ++L+TG CK+G CK++HP R Q + N G + LG+ C
Sbjct: 84 KEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIG--LPMRLGEKPC 141
Query: 117 KFYQSTGGCKHGEACRFKH 135
+Y TG C+ G AC+F H
Sbjct: 142 PYYLRTGTCRFGVACKFHH 160
Score = 156 (60.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 43/154 (27%), Positives = 71/154 (46%)
Query: 95 FQGLKENERG----GFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAF 150
F+ +K NE G G+ C+FY TG C +G +CR+ H
Sbjct: 28 FRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPT------------- 74
Query: 151 NLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKE 210
+LP + E L E+ Q C+++ +T CK+G C++ H +++ GA +
Sbjct: 75 HLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN-------GAQPVMF 127
Query: 211 SKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSH 244
+ G + + G C Y+L G C++G +CKF H
Sbjct: 128 NVIGLPMRL-GEKPCPYYLRTGTCRFGVACKFHH 160
Score = 151 (58.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 377 DTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPV 425
D + Y + E PER G+P C+YF+KTG CKY CK+HHPK+ +G PV
Sbjct: 79 DVAYYKE--ELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPV 125
Score = 138 (53.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
C+++L G C YG+SC+++H PQ E+ LP R+ + +C ++++ G
Sbjct: 53 CQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEE---------LPERIGQPDCEYFLKTG 103
Query: 285 SCAYGVDCRFNHP 297
+C YG C+++HP
Sbjct: 104 ACKYGPTCKYHHP 116
Score = 127 (49.8 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 190 SHSTEKSENPLPFSGANG---MKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSK 246
S+S +N +SG++ M + L E + C++ ++ G CKYG+ CK+SH
Sbjct: 229 SNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSH-- 286
Query: 247 EKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHP 297
P I S+ +N LP R + C + G C +G +C+F+HP
Sbjct: 287 --PGVRI--SQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHP 333
Score = 121 (47.7 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 162 GLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTG 221
GL E + Q +C+F+ T CK+G+ C++SH + P P S N L G
Sbjct: 257 GLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPP-SLINPFV------LPARPG 309
Query: 222 LIGCKYHLSAGGCKYGNSCKFSH 244
C S G CK+G +CKF H
Sbjct: 310 QPACGNFRSYGFCKFGPNCKFDH 332
Score = 112 (44.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKS 423
P R GE C Y+++TG C++ ACKFHHP+ +G S
Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHS 168
Score = 109 (43.4 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 113 QIQCKFYQSTGGCKHGEACRFKH-SIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQ 171
Q +C+F+ +TG CK+G+ C++ H + S+ S++N F LP + G Q
Sbjct: 264 QPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPAR---PG--------QPA 312
Query: 172 CKFYQRTEGCKHGEACRFSH 191
C ++ CK G C+F H
Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332
Score = 106 (42.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 253 IKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHP 297
+K +E ELN P R E +C FY+R G C YG CR+NHP
Sbjct: 31 MKVNETGVEELN--PYPDRPGERDCQFYLRTGLCGYGSSCRYNHP 73
Score = 106 (42.4 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 62 PSRPFAEDCPFYLRTGYCKFGFCCKFNHP 90
P R + CP+YLRTG C+FG CKF+HP
Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHP 161
Score = 90 (36.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 388 PERPGEPLCDYFMKTGNCKYRSACKFHHP 416
P RPG+P C F G CK+ CKF HP
Sbjct: 305 PARPGQPACGNFRSYGFCKFGPNCKFDHP 333
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 386 EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCT 427
+FPERPGEP C Y+++TGNC + CK+HHPKN P CT
Sbjct: 5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCT 46
Score = 127 (49.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 30/79 (37%), Positives = 37/79 (46%)
Query: 218 EMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIEC 277
E G C Y+L G C +CK+ H K I SE LN GLP+R + C
Sbjct: 8 ERPGEPECSYYLRTGNCYLKQNCKYHHPKN-----ITPSEPQCT-LNDKGLPLRPGQAIC 61
Query: 278 PFYMRNGSCAYGVDCRFNH 296
P Y R G C G C+F+H
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
Score = 126 (49.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 57 TKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHP--VRGDFQGLKENERGGFVGQHLGQI 114
++ ++P RP +C +YLRTG C CK++HP + N++G + GQ
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKG--LPLRPGQA 59
Query: 115 QCKFYQSTGGCKHGEACRFKH 135
C Y G C+ G C+F H
Sbjct: 60 ICPHYSRFGICRSGPTCKFDH 80
Score = 95 (38.5 bits), Expect = 0.00054, P = 0.00054
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 112 GQIQCKFYQSTGGCKHGEACRFKH--SIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQ 169
G+ +C +Y TG C + C++ H +I SE + LN LP++ G+ +
Sbjct: 11 GEPECSYYLRTGNCYLKQNCKYHHPKNITPSE-PQCTLNDKGLPLR---PGQAI------ 60
Query: 170 IQCKFYQRTEGCKHGEACRFSHST 193
C Y R C+ G C+F H T
Sbjct: 61 --CPHYSRFGICRSGPTCKFDHFT 82
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 97 (39.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 35/165 (21%), Positives = 64/165 (38%)
Query: 223 IGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKA-SPELNFLGLPIRVHEIECPFYM 281
+ C+ + G C +GN C F H + ++ + E+ P + C +
Sbjct: 137 VPCRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ--SQEWKPRGALCRTFS 194
Query: 282 RNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFHPHW 341
G C YG CRF H P +G + N S W + + ++ + + P
Sbjct: 195 AFGFCLYGTRCRFQHGLPNTIKGHNA-NHTS------WPQQMTNGGSISPISDTCTSPSP 247
Query: 342 MLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNE 386
S ++L VYP + P++ P++ + A T + N+
Sbjct: 248 PSSSPTSALPSPVYPDSSG--PITPPSVEAVANNAFTFSSQHLND 290
Score = 79 (32.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 68 EDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKH 127
E C Y TG CK+ C+F H GL + ++ ++ C+ Y + G C +
Sbjct: 63 ELCSRYAETGTCKYAERCQFAH-------GLHDLHVPSRHPKYKTEL-CRTYHTAGYCVY 114
Query: 128 GEACRFKHSIEK 139
G C F H++++
Sbjct: 115 GTRCLFVHNLKE 126
Score = 77 (32.2 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 24/99 (24%), Positives = 41/99 (41%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
C+ + +AG C YG C F H+ +K+ P R + C + G
Sbjct: 103 CRTYHTAGYCVYGTRCLFVHN-------LKEQRPIRP---------RRRNVPCRTFRAFG 146
Query: 285 SCAYGVDCRFNHPDPVAD-EGSDPFNEASDPA-SRSWSP 321
C +G C F H + ++ +G++ P+ S+ W P
Sbjct: 147 VCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQSQEWKP 185
Score = 67 (28.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 116 CKFYQSTGGCKHGEACRFKHSIEKSEV 142
C Y TG CK+ E C+F H + V
Sbjct: 65 CSRYAETGTCKYAERCQFAHGLHDLHV 91
Score = 55 (24.4 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 390 RPGEPLCDYFMKTGNCKYRSACKFHH 415
+P LC F G C Y + C+F H
Sbjct: 184 KPRGALCRTFSAFGFCLYGTRCRFQH 209
>WB|WBGene00009537 [details] [associations]
symbol:ccch-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:Z82267 HOGENOM:HOG000114059
PIR:T21961 RefSeq:NP_502931.1 ProteinModelPortal:O45491 SMR:O45491
IntAct:O45491 STRING:O45491 EnsemblMetazoa:F38C2.5 GeneID:178454
KEGG:cel:CELE_F38C2.5 UCSC:F38C2.5 CTD:178454 WormBase:F38C2.5
InParanoid:O45491 NextBio:901202 Uniprot:O45491
Length = 186
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 116 CKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLME-KTVQIQCKF 174
CK +Q T C +GE C+F HS+E+ ++L+ K G+ K + C
Sbjct: 78 CKTFQLTRACSYGEQCKFAHSVEE--------------LQLKQKNRGVNHPKYKTVLCDN 123
Query: 175 YQRTEGCKHGEACRFSHSTEK---SENPL 200
+ RT CK+G C+F H + ++NPL
Sbjct: 124 FSRTGHCKYGTKCQFIHRAVEPTPAQNPL 152
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 27/78 (34%), Positives = 35/78 (44%)
Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
CK +Q T C +GE C+F+HS E+ + G N K T L C
Sbjct: 78 CKTFQLTRACSYGEQCKFAHSVEELQLKQKNRGVNHPKYK--------TVL--CDNFSRT 127
Query: 232 GGCKYGNSCKFSHSKEKP 249
G CKYG C+F H +P
Sbjct: 128 GHCKYGTKCQFIHRAVEP 145
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 99 (39.9 bits), Expect = 0.00020, P = 0.00020
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEK---PQTYI--KKSEKASPELNFLGLPIRVHEIECPF 279
CK+ L G CK G+ C+F H + P+ Y K E ++ E FL + +CP+
Sbjct: 15 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPW 73
Query: 280 YMRNGSCAYGVDCRFNH 296
Y R G C +G CR H
Sbjct: 74 YDR-GFCKHGPLCRHRH 89
>UNIPROTKB|E1C259 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:AADN02044292 IPI:IPI00570793 Ensembl:ENSGALT00000013458
Uniprot:E1C259
Length = 1189
Score = 124 (48.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLESKGEGLME 165
+H G+ CK++ G C GE C+F H E K E+ K + + +KGE +
Sbjct: 262 EHKGKQICKYFLE-GRCIKGEQCKFDHDAEIEKKKEICKFYIQGYC------TKGENCIY 314
Query: 166 KTVQIQCKFYQRTEGCKHGEACRFSHSTEKSE 197
+ CKFY C G+ C+FSH+ +E
Sbjct: 315 LHNEFPCKFYHTGAKCYQGDKCKFSHAPLTAE 346
Score = 49 (22.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 201 PFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKAS 260
P A+G++ GSL+ L + H S+ +S + +++K + +K S K
Sbjct: 1024 PKLSASGVRLGTSGSLLSGISLYDPRDHSSSSDAAPASSGENGENQKK--SILKNSAKND 1081
Query: 261 PELN 264
P L+
Sbjct: 1082 PSLS 1085
>WB|WBGene00013319 [details] [associations]
symbol:ccch-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0009792 EMBL:Z99281 GO:GO:0008270 GO:GO:0000003
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262
PIR:T27239 RefSeq:NP_502805.1 ProteinModelPortal:O18251 SMR:O18251
STRING:O18251 EnsemblMetazoa:Y57G11C.25 GeneID:178412
KEGG:cel:CELE_Y57G11C.25 UCSC:Y57G11C.25 CTD:178412
WormBase:Y57G11C.25 HOGENOM:HOG000114059 InParanoid:O18251
NextBio:901036 Uniprot:O18251
Length = 199
Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
CK +Q T+ C +GE C+F+HS E+ + G N K T L C +
Sbjct: 74 CKTFQLTKACSYGEQCKFAHSVEELQLKHQNLGINNPKYK--------TVL--CDNFSTT 123
Query: 232 GGCKYGNSCKFSHSKEKP 249
G CKYG C+F H +P
Sbjct: 124 GHCKYGTKCQFIHRTVEP 141
Score = 109 (43.4 bits), Expect = 0.00084, P = 0.00084
Identities = 32/90 (35%), Positives = 43/90 (47%)
Query: 116 CKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFY 175
CK +Q T C +GE C+F HS+E+ ++ L N P K KTV C +
Sbjct: 74 CKTFQLTKACSYGEQCKFAHSVEELQLKHQNLG-INNP-KY---------KTVL--CDNF 120
Query: 176 QRTEGCKHGEACRFSHSTE-----KSENPL 200
T CK+G C+F H T K +NPL
Sbjct: 121 STTGHCKYGTKCQFIHRTVEPASLKIQNPL 150
>UNIPROTKB|Q17QY2 [details] [associations]
symbol:ZC3H8 "Zinc finger CCCH-type containing 8"
species:9913 "Bos taurus" [GO:0070245 "positive regulation of
thymocyte apoptotic process" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0043565
GO:GO:0008270 GO:GO:0046677 GO:GO:0003700 GO:GO:0070245
GO:GO:0043029 GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OMA:PKKFRHS OrthoDB:EOG454907 EMBL:DAAA02030062 EMBL:BC118120
IPI:IPI00685661 RefSeq:NP_001068759.1 UniGene:Bt.29569 SMR:Q17QY2
Ensembl:ENSBTAT00000021230 GeneID:506983 KEGG:bta:506983
InParanoid:Q17QY2 NextBio:20867839 Uniprot:Q17QY2
Length = 303
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 32/105 (30%), Positives = 50/105 (47%)
Query: 105 GFVGQHLGQIQ----CKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLE 157
GF+ QH Q Q CK++ C G+ C+F H E K E+ K + +
Sbjct: 195 GFINQHTVQRQGKQICKYFLERK-CIKGDQCKFDHDAEIEKKKEMCKFYVQGYC------ 247
Query: 158 SKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHS--TEKSENPL 200
++GE + + CKFY C GE C+FSH+ T++++ L
Sbjct: 248 TRGENCLYLHNEYPCKFYHTGAKCYQGEHCKFSHAPLTDETQELL 292
>UNIPROTKB|F1SUA1 [details] [associations]
symbol:ZC3H8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070245 "positive regulation of thymocyte apoptotic
process" evidence=IEA] [GO:0046677 "response to antibiotic"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043029 "T cell homeostasis" evidence=IEA]
[GO:0033085 "negative regulation of T cell differentiation in
thymus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270
GO:GO:0046677 GO:GO:0003700 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 GeneTree:ENSGT00530000063288 OMA:PKKFRHS
EMBL:FP326709 Ensembl:ENSSSCT00000008872 Uniprot:F1SUA1
Length = 307
Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
Identities = 31/100 (31%), Positives = 46/100 (46%)
Query: 105 GFVGQHLGQIQ----CKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLE 157
GF+ QH Q Q CK++ C G+ C+F H E K E+ K + +
Sbjct: 199 GFINQHTVQRQGKQICKYFLERK-CIKGDQCKFDHDAEIEKKKEMCKFYVQGYC------ 251
Query: 158 SKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSE 197
++GE + + CKFY C GE C+FSH+ +E
Sbjct: 252 TRGENCLYLHNEYPCKFYHTGAKCYQGEYCKFSHAPLTAE 291
>MGI|MGI:1926001 [details] [associations]
symbol:Zc3h6 "zinc finger CCCH type containing 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:1926001 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5084 EMBL:AL833780 GeneTree:ENSGT00530000063288
HOGENOM:HOG000231733 HOVERGEN:HBG063914 OrthoDB:EOG4CG081
EMBL:AK014766 EMBL:AK039171 EMBL:BC043311 EMBL:BC058173
IPI:IPI00108263 IPI:IPI00761322 UniGene:Mm.26377
ProteinModelPortal:Q8BYK8 SMR:Q8BYK8 PhosphoSite:Q8BYK8
PRIDE:Q8BYK8 Ensembl:ENSMUST00000110319 UCSC:uc008mha.2
InParanoid:Q8BYK8 Bgee:Q8BYK8 CleanEx:MM_ZC3H6
Genevestigator:Q8BYK8 GermOnline:ENSMUSG00000042851 Uniprot:Q8BYK8
Length = 1177
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLESKGEGLME 165
+H G+ CK++ G C G+ C+F H E K EV K L + +KGE +
Sbjct: 269 EHKGKQICKYFLE-GRCIKGDHCKFNHDAELEKKKEVCKYYLQGYC------TKGENCIY 321
Query: 166 KTVQIQCKFYQRTEGCKHGEACRFSH 191
+ CKFY C G+ C+FSH
Sbjct: 322 MHSEFPCKFYHSGAKCYQGDKCKFSH 347
>ZFIN|ZDB-GENE-990415-180 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation specific
factor 4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042462 "eye photoreceptor cell development" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356
ZFIN:ZDB-GENE-990415-180 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0042462
HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898 KO:K14404
OrthoDB:EOG4KH2VQ EMBL:U70479 EMBL:BC045289 IPI:IPI00630205
RefSeq:NP_571084.1 UniGene:Dr.75095 SMR:Q98881 STRING:Q98881
GeneID:30203 KEGG:dre:30203 InParanoid:Q98881 NextBio:20806666
Uniprot:Q98881
Length = 271
Score = 109 (43.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKEK---PQTYI--KKSEKASPELNFLGLPIRVHEIECPF 279
CK+ L G CK G+ C+F H + P+ Y K E ++ E FL + +CP+
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPW 126
Query: 280 YMRNGSCAYGVDCRFNH 296
Y R G C +G DCR H
Sbjct: 127 YDR-GFCKHGPDCRHRH 142
Score = 45 (20.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 395 LCDYFMKTGNCKYRSACKFHHPK 417
+C ++ G C +CKF HP+
Sbjct: 147 ICVNYL-VGFCPEGKSCKFMHPR 168
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 115 (45.5 bits), Expect = 0.00061, P = 0.00061
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 383 QFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPV 425
Q + +P RPG+ C +++K G C+YRS+C+F+HP + PV
Sbjct: 48 QSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPV 90
>WB|WBGene00021924 [details] [associations]
symbol:Y55F3AM.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 OMA:FEEGANS EMBL:FO081813
GeneTree:ENSGT00390000014093 GeneID:176918 KEGG:cel:CELE_Y55F3AM.6
CTD:176918 RefSeq:NP_001023510.1 ProteinModelPortal:Q9N373
SMR:Q9N373 EnsemblMetazoa:Y55F3AM.6a UCSC:Y55F3AM.6a
WormBase:Y55F3AM.6a InParanoid:Q9N373 NextBio:894576
ArrayExpress:Q9N373 Uniprot:Q9N373
Length = 413
Score = 83 (34.3 bits), Expect = 0.00067, Sum P(4) = 0.00066
Identities = 35/133 (26%), Positives = 53/133 (39%)
Query: 116 CKFYQSTGGCKHGEACRFKHSIEKSEV--SKSVLNAFNLPIKLESKGEGLMEKTVQIQCK 173
C F G C +G ACRF H+ +++ S S L++ G+ + K + + K
Sbjct: 36 CHF-NLVGKCSYGRACRFLHTRPRNDELPSCSTPQTSQNQQNLQNSGQRVRPKQLP-ELK 93
Query: 174 FY-QRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAG 232
F Q E + + T S S +G S S E L+ C YH +G
Sbjct: 94 FNAQAAEFVPRWKMPQRGPVT--SYAGAAASADHGESSSSFQSSHEQAQLMMCPYHQKSG 151
Query: 233 GC-KYGNSCKFSH 244
C + C F+H
Sbjct: 152 DCNRQDMDCPFAH 164
Score = 56 (24.8 bits), Expect = 0.00067, Sum P(4) = 0.00066
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 69 DCPFYLRTGYCKFGFCCKFNHPV 91
DC Y GYC G C F H V
Sbjct: 7 DCR-YFANGYCSKGNTCTFTHDV 28
Score = 54 (24.1 bits), Expect = 0.00067, Sum P(4) = 0.00066
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 277 CPFYMRN---GSCAYGVDCRFNH--PDPVADEGSDP 307
C +Y G+C +G C + H PD D G P
Sbjct: 302 CKYYSNERSRGACPFGNKCFYKHQLPDGSIDPGEAP 337
Score = 38 (18.4 bits), Expect = 0.00067, Sum P(4) = 0.00066
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 235 KYGNSCKFSHSKEKPQTYI-KKSEK 258
K+ N C +H+ E + ++ +K+E+
Sbjct: 186 KHENECVANHTTEMERAFLLQKTEQ 210
>UNIPROTKB|E2RFS8 [details] [associations]
symbol:ZC3H8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070245 "positive regulation of thymocyte
apoptotic process" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0043565
GO:GO:0008270 GO:GO:0046677 GO:GO:0003700 GO:GO:0070245
GO:GO:0043029 GO:GO:0033085 GeneTree:ENSGT00530000063288
EMBL:AAEX03010906 Ensembl:ENSCAFT00000011466 OMA:ECERIPK
NextBio:20857524 Uniprot:E2RFS8
Length = 393
Score = 116 (45.9 bits), Expect = 0.00068, P = 0.00068
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 105 GFVGQHL----GQIQCKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLE 157
GF+ QH G+ CK++ C G+ C+F H E K E+ K + +
Sbjct: 285 GFINQHTVERKGKQICKYFLERK-CIKGDQCKFDHDAEIEKKKEMCKFYVQGYC------ 337
Query: 158 SKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHS 192
++GE + + CKFY C GE C+FSHS
Sbjct: 338 TRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSHS 372
>POMBASE|SPAP8A3.06 [details] [associations]
symbol:SPAP8A3.06 "U2AF small subunit, U2AF-23"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=IDA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IDA]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 PomBase:SPAP8A3.06 GO:GO:0005829
EMBL:CU329670 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000243 GO:GO:0000349
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0045292 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 EMBL:U48234 PIR:T39243
RefSeq:NP_594945.1 ProteinModelPortal:Q09176 SMR:Q09176
IntAct:Q09176 STRING:Q09176 EnsemblFungi:SPAP8A3.06.1
GeneID:2542482 KEGG:spo:SPAP8A3.06 OMA:HETSECQ OrthoDB:EOG476P88
NextBio:20803537 Uniprot:Q09176
Length = 216
Score = 98 (39.6 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 108 GQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVL--NAFNLPIKLESKGEGLME 165
G ++ C FY G C+HGE C KH K S+++L N + PI E G+ +
Sbjct: 10 GTEQDKVNCSFYYKIGACRHGERCSRKHV--KPNFSQTILCPNMYKNPIH-EPNGKKFTQ 66
Query: 166 KTVQIQCK-FYQRT--EGCKHGE 185
+ + Q FY+ E K+GE
Sbjct: 67 RELAEQFDAFYEDMFCEFSKYGE 89
Score = 51 (23.0 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 225 CKYHLSAGGCKYGNSCKFSHSKE-KPQ 250
C+ H C+ G C F H+K+ PQ
Sbjct: 149 CRQH-ETSECQRGGLCNFMHAKKPSPQ 174
>MGI|MGI:1930128 [details] [associations]
symbol:Zc3h8 "zinc finger CCCH type containing 8"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0033085 "negative
regulation of T cell differentiation in thymus" evidence=ISO]
[GO:0043029 "T cell homeostasis" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IMP]
[GO:0046677 "response to antibiotic" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070245 "positive regulation
of thymocyte apoptotic process" evidence=ISO] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1930128
GO:GO:0005634 GO:GO:0006915 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0046677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003723 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OMA:PKKFRHS OrthoDB:EOG454907 EMBL:AF061961 EMBL:BC048687
IPI:IPI00330691 RefSeq:NP_065619.2 UniGene:Mm.11675
ProteinModelPortal:Q9JJ48 SMR:Q9JJ48 PhosphoSite:Q9JJ48
PRIDE:Q9JJ48 Ensembl:ENSMUST00000028866 GeneID:57432 KEGG:mmu:57432
InParanoid:Q9JJ48 NextBio:313802 Bgee:Q9JJ48 CleanEx:MM_ZC3H8
Genevestigator:Q9JJ48 GermOnline:ENSMUSG00000027387 Uniprot:Q9JJ48
Length = 305
Score = 114 (45.2 bits), Expect = 0.00071, P = 0.00071
Identities = 30/100 (30%), Positives = 45/100 (45%)
Query: 105 GFVGQHL----GQIQCKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLE 157
GF+ QH G+ CK++ C G+ C+F H E K E+ K + +
Sbjct: 196 GFINQHTVERKGKQVCKYFLERK-CIKGDQCKFDHDAEIEKKKEMCKYYVQGYC------ 248
Query: 158 SKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSE 197
+KGE + + CKFY C G+ C FSH+ +E
Sbjct: 249 TKGENCLYLHSEYPCKFYHTGTKCYQGDHCNFSHAPLTAE 288
>RGD|1310458 [details] [associations]
symbol:Zc3h8 "zinc finger CCCH type containing 8" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA;ISO] [GO:0043029 "T cell
homeostasis" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0046677 "response
to antibiotic" evidence=IEA;ISO] [GO:0070245 "positive regulation
of thymocyte apoptotic process" evidence=IEA;ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
RGD:1310458 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270 GO:GO:0046677
GO:GO:0003700 GO:GO:0070245 GO:GO:0043029 EMBL:CH473949
GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OrthoDB:EOG454907 EMBL:BC079122 IPI:IPI00464661
RefSeq:NP_001012090.1 UniGene:Rn.137486 SMR:Q6AYB0
Ensembl:ENSRNOT00000023845 GeneID:311414 KEGG:rno:311414
UCSC:RGD:1310458 InParanoid:Q6AYB0 NextBio:663570
Genevestigator:Q6AYB0 Uniprot:Q6AYB0
Length = 305
Score = 113 (44.8 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 30/100 (30%), Positives = 45/100 (45%)
Query: 105 GFVGQHL----GQIQCKFYQSTGGCKHGEACRFKHSIE---KSEVSKSVLNAFNLPIKLE 157
GF+ QH G+ CK++ C G+ C+F H E K E+ K + +
Sbjct: 196 GFINQHTVERKGKQVCKYFLERK-CIKGDQCKFDHDAEIEKKKEMCKYYVQGYC------ 248
Query: 158 SKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSE 197
+KGE + + CKFY C G+ C FSH+ +E
Sbjct: 249 TKGENCLYLHNEYPCKFYHTGTKCYQGDHCNFSHAPLTAE 288
Score = 40 (19.1 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 41 LTEESYNPDGNGDSQGT 57
L EES G GD+Q T
Sbjct: 120 LPEESVKKAGTGDTQQT 136
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.435 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 428 414 0.00081 118 3 11 22 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 615 (65 KB)
Total size of DFA: 314 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.72u 0.12s 34.84t Elapsed: 00:00:02
Total cpu time: 34.73u 0.12s 34.85t Elapsed: 00:00:02
Start: Fri May 10 08:03:49 2013 End: Fri May 10 08:03:51 2013