Query 014215
Match_columns 428
No_of_seqs 334 out of 1473
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.6 4.1E-15 8.9E-20 149.9 15.1 117 170-302 87-205 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.5 5.7E-14 1.2E-18 141.6 14.3 125 59-195 78-203 (332)
3 KOG1492 C3H1-type Zn-finger pr 99.4 5.3E-14 1.1E-18 131.3 3.8 134 65-301 204-337 (377)
4 KOG1040 Polyadenylation factor 99.4 1.3E-13 2.8E-18 137.6 5.6 151 66-300 76-227 (325)
5 KOG1040 Polyadenylation factor 99.4 4.2E-13 9E-18 133.9 7.3 140 66-301 44-185 (325)
6 KOG1039 Predicted E3 ubiquitin 99.2 2.1E-11 4.6E-16 122.6 5.9 134 274-415 93-272 (344)
7 KOG1492 C3H1-type Zn-finger pr 99.0 2.2E-10 4.8E-15 107.2 3.8 114 109-301 202-315 (377)
8 COG5084 YTH1 Cleavage and poly 98.8 2.5E-08 5.5E-13 97.8 10.7 147 67-301 74-236 (285)
9 COG5063 CTH1 CCCH-type Zn-fing 98.8 4.6E-08 9.9E-13 95.3 10.3 200 66-301 114-341 (351)
10 COG5084 YTH1 Cleavage and poly 98.6 7.5E-08 1.6E-12 94.6 8.0 117 66-248 103-235 (285)
11 KOG2494 C3H1-type Zn-finger pr 98.6 5.4E-08 1.2E-12 96.0 5.1 197 68-300 38-255 (331)
12 KOG2494 C3H1-type Zn-finger pr 98.6 6.1E-08 1.3E-12 95.7 4.9 174 222-420 37-222 (331)
13 COG5063 CTH1 CCCH-type Zn-fing 98.4 2.8E-07 6E-12 90.0 5.3 104 68-195 231-340 (351)
14 PF00642 zf-CCCH: Zinc finger 98.2 4.8E-07 1E-11 58.0 1.1 26 392-417 2-27 (27)
15 KOG4791 Uncharacterized conser 98.2 1.1E-06 2.3E-11 90.3 3.6 134 113-301 3-144 (667)
16 PF00642 zf-CCCH: Zinc finger 98.1 5.3E-07 1.1E-11 57.8 0.0 26 66-91 2-27 (27)
17 KOG4791 Uncharacterized conser 98.0 2.5E-06 5.4E-11 87.6 3.0 134 68-248 4-143 (667)
18 KOG1595 CCCH-type Zn-finger pr 97.7 0.0001 2.2E-09 77.4 8.5 186 69-301 78-294 (528)
19 smart00356 ZnF_C3H1 zinc finge 97.5 7.1E-05 1.5E-09 47.3 2.2 25 112-137 3-27 (27)
20 smart00356 ZnF_C3H1 zinc finge 97.4 0.00012 2.6E-09 46.2 2.4 24 274-298 4-27 (27)
21 KOG3702 Nuclear polyadenylated 97.3 0.00046 1E-08 74.0 7.3 42 83-139 525-566 (681)
22 KOG1595 CCCH-type Zn-finger pr 97.1 0.0005 1.1E-08 72.3 4.6 96 111-250 199-295 (528)
23 KOG1763 Uncharacterized conser 96.9 0.00017 3.8E-09 70.4 -0.8 82 110-195 89-192 (343)
24 KOG2185 Predicted RNA-processi 96.9 0.00054 1.2E-08 69.7 2.5 40 268-308 134-173 (486)
25 KOG1763 Uncharacterized conser 96.9 0.00022 4.8E-09 69.7 -0.2 78 63-141 88-194 (343)
26 KOG3702 Nuclear polyadenylated 96.6 0.005 1.1E-07 66.3 7.1 163 78-305 486-652 (681)
27 KOG2333 Uncharacterized conser 96.4 0.0011 2.5E-08 69.0 1.2 59 67-135 76-136 (614)
28 KOG2185 Predicted RNA-processi 96.0 0.0037 8E-08 63.8 2.2 60 81-141 98-167 (486)
29 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0059 1.3E-07 35.9 1.8 19 69-90 1-19 (19)
30 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0055 1.2E-07 36.0 1.6 19 115-136 1-19 (19)
31 COG5252 Uncharacterized conser 95.3 0.0041 8.9E-08 59.3 -0.2 76 63-139 81-177 (299)
32 KOG2333 Uncharacterized conser 95.2 0.0085 1.8E-07 62.7 1.5 62 222-299 76-141 (614)
33 COG5252 Uncharacterized conser 95.0 0.0061 1.3E-07 58.2 -0.1 80 109-195 81-177 (299)
34 KOG2202 U2 snRNP splicing fact 92.9 0.032 6.9E-07 54.1 0.3 31 65-95 13-43 (260)
35 COG5152 Uncharacterized conser 92.0 0.064 1.4E-06 50.1 1.0 28 274-301 141-168 (259)
36 COG5152 Uncharacterized conser 91.7 0.064 1.4E-06 50.1 0.6 31 68-98 142-172 (259)
37 KOG1039 Predicted E3 ubiquitin 84.4 0.38 8.2E-06 49.2 0.7 25 114-139 9-33 (344)
38 PF10650 zf-C3H1: Putative zin 84.1 0.73 1.6E-05 28.4 1.6 22 171-193 2-23 (23)
39 KOG1813 Predicted E3 ubiquitin 83.1 0.37 8E-06 47.8 0.0 32 275-306 187-218 (313)
40 KOG2202 U2 snRNP splicing fact 82.9 0.24 5.2E-06 48.1 -1.3 28 169-196 15-42 (260)
41 PHA03096 p28-like protein; Pro 79.9 0.069 1.5E-06 53.2 -6.4 25 285-309 130-154 (284)
42 PF10650 zf-C3H1: Putative zin 79.8 1.2 2.6E-05 27.5 1.4 21 276-297 2-22 (23)
43 KOG1813 Predicted E3 ubiquitin 77.1 0.9 1.9E-05 45.1 0.5 25 394-418 187-211 (313)
44 KOG0153 Predicted RNA-binding 62.7 4.3 9.4E-05 41.3 1.7 25 274-299 161-185 (377)
45 PF10283 zf-CCHH: Zinc-finger 44.0 9.1 0.0002 24.4 0.4 9 404-412 2-10 (26)
46 KOG0153 Predicted RNA-binding 42.9 15 0.00032 37.5 1.9 30 63-93 157-186 (377)
47 PRK03003 GTP-binding protein D 20.0 37 0.00079 36.2 0.2 30 2-31 1-30 (472)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.63 E-value=4.1e-15 Score=149.87 Aligned_cols=117 Identities=32% Similarity=0.649 Sum_probs=93.3
Q ss_pred ccCcccccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCC-CCCCCcCCCCC
Q 014215 170 IQCKFYQRTEGCKHGEACRFSHST-EKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKY-GNSCKFSHSKE 247 (428)
Q Consensus 170 ~~C~~f~~~g~C~~G~~C~f~H~~-~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~-G~~C~f~H~~~ 247 (428)
..|.+|.+.+.|.+++.|++.|+. ........ .......+++.++++|++|.+.|.|++ |..|+|+|...
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~--------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~ 158 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR--------RSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLE 158 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCcc--------ccccccCcccccCCcceeeecCccccccCchhhhcCCcc
Confidence 689999999999999999999996 22111100 012234567789999999999999999 99999999987
Q ss_pred CcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCcc
Q 014215 248 KPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVAD 302 (428)
Q Consensus 248 ~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~ 302 (428)
..... ..++..+.+.+.++++|.+|+++|.|+||.+|+|.|+.....
T Consensus 159 e~r~~--------~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 159 ELRLP--------SSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred ccccc--------ccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 64320 035678889999999999999999999999999999988543
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.55 E-value=5.7e-14 Score=141.58 Aligned_cols=125 Identities=33% Similarity=0.626 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCC-CCCCCcccCC
Q 014215 59 HEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKH-GEACRFKHSI 137 (428)
Q Consensus 59 ~~~p~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~-G~~C~f~H~~ 137 (428)
..|+++.....|.++.+++.|.++..|+|.|+..+.+............++++++.+|++|.+.|.|++ |++|+|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~ 157 (332)
T KOG1677|consen 78 SPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGL 157 (332)
T ss_pred CcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCc
Confidence 448888877899999999999999999999997444332211112335567899999999999999999 9999999988
Q ss_pred CcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCC
Q 014215 138 EKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEK 195 (428)
Q Consensus 138 ~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~ 195 (428)
....... .......+.+.++.+|.+|+++|.|+||.+|+|.|....
T Consensus 158 ~e~r~~~------------~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~ 203 (332)
T KOG1677|consen 158 EELRLPS------------SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE 203 (332)
T ss_pred ccccccc------------cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence 8753210 001123344567899999999999999999999999863
No 3
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.44 E-value=5.3e-14 Score=131.29 Aligned_cols=134 Identities=28% Similarity=0.607 Sum_probs=113.7
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccc
Q 014215 65 PFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSK 144 (428)
Q Consensus 65 ~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~ 144 (428)
|....|+||...|.|.+|..|+|.|...+ +.+|..|+ .|.|...+.|.++|.....
T Consensus 204 psavycryynangicgkgaacrfvheptr-------------------kticpkfl-ngrcnkaedcnlsheldpr---- 259 (377)
T KOG1492|consen 204 PSAVYCRYYNANGICGKGAACRFVHEPTR-------------------KTICPKFL-NGRCNKAEDCNLSHELDPR---- 259 (377)
T ss_pred CceeEEEEecCCCcccCCceeeeeccccc-------------------cccChHHh-cCccCchhcCCcccccCcc----
Confidence 44567999999999999999999996654 57899998 9999999999999998763
Q ss_pred cccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccc
Q 014215 145 SVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224 (428)
Q Consensus 145 ~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~ 224 (428)
..+.|+||+-| .|.. .+|+|.|..-.. ..++
T Consensus 260 -----------------------ripacryfllg-kcnn-pncryvhihyse------------------------napi 290 (377)
T KOG1492|consen 260 -----------------------RIPACRYFLLG-KCNN-PNCRYVHIHYSE------------------------NAPI 290 (377)
T ss_pred -----------------------ccchhhhhhhc-cCCC-CCceEEEEeecC------------------------CCce
Confidence 24689999998 8975 899999996432 2378
Q ss_pred cccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCc
Q 014215 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 225 C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
|.-|.+.|+|..|..|+-.|.. .|..|..+|+|. ...|...|+....
T Consensus 291 cfefakygfcelgtscknqhil-----------------------------qctdyamfgscn-npqcslyhgavsa 337 (377)
T KOG1492|consen 291 CFEFAKYGFCELGTSCKNQHIL-----------------------------QCTDYAMFGSCN-NPQCSLYHGAVSA 337 (377)
T ss_pred eeeehhcceeccccccccceee-----------------------------eecchhhhcCCC-CCcceeecceecc
Confidence 9999999999999999999965 488898899998 7899999996543
No 4
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.42 E-value=1.3e-13 Score=137.60 Aligned_cols=151 Identities=23% Similarity=0.413 Sum_probs=119.2
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccccccc
Q 014215 66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKS 145 (428)
Q Consensus 66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~ 145 (428)
++.+|+||++ |.|+.||.|.|+|..+. .+++.|.||...|.|.+|..|.|.|.....
T Consensus 76 ~~~vcK~~l~-glC~kgD~C~Flhe~~~-----------------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt----- 132 (325)
T KOG1040|consen 76 GKVVCKHWLR-GLCKKGDQCEFLHEYDL-----------------TKMRECKFFSLFGECTNGKDCPYLHGDPQT----- 132 (325)
T ss_pred Cceeehhhhh-hhhhccCcCcchhhhhh-----------------cccccccccccccccccccCCcccCCChhh-----
Confidence 5678999995 99999999999998843 357789999999999999999999987531
Q ss_pred ccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCcccc
Q 014215 146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGC 225 (428)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C 225 (428)
....|.+|.++ .|..|..|++.|... ++|
T Consensus 133 ----------------------~~k~c~~~~~g-~c~~g~~c~~~h~~~----------------------------~~c 161 (325)
T KOG1040|consen 133 ----------------------AIKKCKWYKEG-FCRGGPSCKKRHERK----------------------------VLC 161 (325)
T ss_pred ----------------------hhhccchhhhc-cCCCcchhhhhhhcc----------------------------cCC
Confidence 23589999998 999999999999964 578
Q ss_pred ccccCCCCCCCCCC-CCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCC
Q 014215 226 KYHLSAGGCKYGNS-CKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPV 300 (428)
Q Consensus 226 ~~f~~~G~C~~G~~-C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~ 300 (428)
..|+ .|+|..|.. |.+.|........ ........+-+.+.+++.++.. ..+.....|.+.+....
T Consensus 162 ~~y~-~gfC~~g~q~c~~~hp~~~~~~~--------~~~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~ 227 (325)
T KOG1040|consen 162 PPYN-AGFCPKGPQRCDMLHPEFQQPPF--------HQGSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHE 227 (325)
T ss_pred Cchh-hhhccCCCCcccccCCCCCCChh--------hccccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHH
Confidence 8888 499999988 9999988653211 1111223444566788888866 88888999999877654
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.40 E-value=4.2e-13 Score=133.92 Aligned_cols=140 Identities=31% Similarity=0.669 Sum_probs=114.8
Q ss_pred CCCCCcccccc-CCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccc
Q 014215 66 FAEDCPFYLRT-GYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSK 144 (428)
Q Consensus 66 ~~~~C~~~~r~-G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~ 144 (428)
+...|.++.+. -.|.+|..|...|...+. ..++++||||+ .|.|+.|+.|.|+|++..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~vcK~~l-~glC~kgD~C~Flhe~~~----- 102 (325)
T KOG1040|consen 44 GRATCEFNESREKPCERGPICPKSHNDVSD---------------SRGKVVCKHWL-RGLCKKGDQCEFLHEYDL----- 102 (325)
T ss_pred ccchhcccccCCCCccCCCCCccccCCccc---------------cCCceeehhhh-hhhhhccCcCcchhhhhh-----
Confidence 34568877632 578889999999977531 23578999999 999999999999999843
Q ss_pred cccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccc
Q 014215 145 SVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224 (428)
Q Consensus 145 ~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~ 224 (428)
++++.|.||...|.|..|.+|.|.|..... ....
T Consensus 103 ----------------------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt------------------------~~k~ 136 (325)
T KOG1040|consen 103 ----------------------TKMRECKFFSLFGECTNGKDCPYLHGDPQT------------------------AIKK 136 (325)
T ss_pred ----------------------cccccccccccccccccccCCcccCCChhh------------------------hhhc
Confidence 235699999999999999999999997532 2368
Q ss_pred cccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCC-CccCCCCCCc
Q 014215 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVD-CRFNHPDPVA 301 (428)
Q Consensus 225 C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~-C~F~H~~~~~ 301 (428)
|.+|.. |+|..|..|++.|... +.|+.|+. |.|..|.. |.+.|+..-.
T Consensus 137 c~~~~~-g~c~~g~~c~~~h~~~---------------------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~ 185 (325)
T KOG1040|consen 137 CKWYKE-GFCRGGPSCKKRHERK---------------------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQ 185 (325)
T ss_pred cchhhh-ccCCCcchhhhhhhcc---------------------------cCCCchhh-hhccCCCCcccccCCCCCC
Confidence 999885 9999999999999762 47999966 99999998 9999998654
No 6
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-11 Score=122.61 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=96.7
Q ss_pred CCCCccccccccCCCCCCCccCCCCCCccCCCCCCCCCC--------CCc--------c-cCCCcccccCCCCCCCCCCC
Q 014215 274 EIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEAS--------DPA--------S-RSWSPDIISRKTVPNLDNHS 336 (428)
Q Consensus 274 e~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~~p~~~~~--------~~~--------~-~~w~~~~~s~~~~p~~~~~~ 336 (428)
..+|+|. +.|.|.+|..|.+.|..-+.+++..-+.+.. ..+ + .+.+.++ +...++|+++..
T Consensus 93 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~-s~~k~CGICme~ 170 (344)
T KOG1039|consen 93 TQENPYS-NHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQK-SSEKECGICMET 170 (344)
T ss_pred cccCccc-cccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCc-cccccceehhhh
Confidence 4689988 4699999999999998888887765332111 001 1 1122233 345677777653
Q ss_pred CC-------Cccccc-----------CCCC---------cCCccccCCCCCCCCCCccccCCCCccCCCccccc-cccCC
Q 014215 337 FH-------PHWMLK-----------SKFN---------SLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQ-FNEFP 388 (428)
Q Consensus 337 ~~-------~~~~~~-----------~~~~---------~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~q-~~~~p 388 (428)
-+ ..+||+ .+|+ ...||+||+.+.+++||.+|+.... ++++ +..|.
T Consensus 171 i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~------~k~~li~e~~ 244 (344)
T KOG1039|consen 171 INEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKE------EKQKLIEEYE 244 (344)
T ss_pred ccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecc------cccccHHHHH
Confidence 22 234554 6888 5579999999999999999987642 2233 67888
Q ss_pred CCCCCccchhh-hccCCCCCCCCCcCCC
Q 014215 389 ERPGEPLCDYF-MKTGNCKYRSACKFHH 415 (428)
Q Consensus 389 ~r~~~~~C~~~-~~~g~C~fg~~C~y~H 415 (428)
+.++...|+|| ...|.||||..|.|.|
T Consensus 245 ~~~s~~~c~yf~~~~g~cPf~s~~~y~h 272 (344)
T KOG1039|consen 245 AEMSAKDCKYFSQGLGSCPFGSKCFYKH 272 (344)
T ss_pred HHhhccchhhhcCCCCCCCCCCcccccc
Confidence 89999999999 6679999999999999
No 7
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.00 E-value=2.2e-10 Score=107.22 Aligned_cols=114 Identities=25% Similarity=0.664 Sum_probs=95.6
Q ss_pred CccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR 188 (428)
Q Consensus 109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~ 188 (428)
..+....||||...|.|-.|..|+|.|.... ..+|.-|+.| .|...++|.
T Consensus 202 nspsavycryynangicgkgaacrfvheptr-----------------------------kticpkflng-rcnkaedcn 251 (377)
T KOG1492|consen 202 NSPSAVYCRYYNANGICGKGAACRFVHEPTR-----------------------------KTICPKFLNG-RCNKAEDCN 251 (377)
T ss_pred CCCceeEEEEecCCCcccCCceeeeeccccc-----------------------------cccChHHhcC-ccCchhcCC
Confidence 3456788999999999999999999998764 2489999998 999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCC
Q 014215 189 FSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGL 268 (428)
Q Consensus 189 f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~ 268 (428)
.+|..+. ...+.|+||+ .|.|.. .+|+|.|.-...
T Consensus 252 lsheldp------------------------rripacryfl-lgkcnn-pncryvhihyse------------------- 286 (377)
T KOG1492|consen 252 LSHELDP------------------------RRIPACRYFL-LGKCNN-PNCRYVHIHYSE------------------- 286 (377)
T ss_pred cccccCc------------------------cccchhhhhh-hccCCC-CCceEEEEeecC-------------------
Confidence 9999753 2357899999 599986 689999975422
Q ss_pred CCCCCCCCCccccccccCCCCCCCccCCCCCCc
Q 014215 269 PIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 269 P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
..++|.-|.+.|+|..|..|+-.|...|.
T Consensus 287 ----napicfefakygfcelgtscknqhilqct 315 (377)
T KOG1492|consen 287 ----NAPICFEFAKYGFCELGTSCKNQHILQCT 315 (377)
T ss_pred ----CCceeeeehhcceeccccccccceeeeec
Confidence 23589999999999999999999998875
No 8
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.81 E-value=2.5e-08 Score=97.85 Aligned_cols=147 Identities=24% Similarity=0.408 Sum_probs=111.3
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccccc
Q 014215 67 AEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV 146 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~ 146 (428)
+..|.+++..+.+....+|++.|..... ...++|++|+ .|.|+.|..|.|+|...-..
T Consensus 74 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~----------------~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~----- 131 (285)
T COG5084 74 TVACISRNFNSIRGSRLSTPNNHVNPVL----------------SSSVVCKFFL-RGLCKSGFSCEFLHEYDLRS----- 131 (285)
T ss_pred ccccccccccCCccccccCCccccCccc----------------cCCcccchhc-cccCcCCCccccccCCCccc-----
Confidence 4558888866666666689999976542 3467999998 99999999999999887531
Q ss_pred cccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccc
Q 014215 147 LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCK 226 (428)
Q Consensus 147 ~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~ 226 (428)
..+..|++|...|.|..|..|.|.|.++.. ....|.
T Consensus 132 --------------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~------------------------~~~~~~ 167 (285)
T COG5084 132 --------------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDS------------------------FAGNCD 167 (285)
T ss_pred --------------------ccCCCcccccccceeccCCCCCccccCccc------------------------cccccc
Confidence 124689999777799999999999998532 124577
Q ss_pred cccC--CCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCC-------------
Q 014215 227 YHLS--AGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVD------------- 291 (428)
Q Consensus 227 ~f~~--~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~------------- 291 (428)
+|.. .+.|..|..|++.|....... . ...|..|+. ++|..|..
T Consensus 168 ~~~~~~~~f~p~g~~c~~~H~~~~~~~--------------~-------~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~ 225 (285)
T COG5084 168 QYSGATYGFCPLGASCKFSHTLKRVSY--------------G-------SSPCGNYTP-PFSPPGTPSESVSSWGYGKGT 225 (285)
T ss_pred ccCcccccccCCCCccccccccccccc--------------c-------ccccccCcC-CcCCCCCCccccccccccccc
Confidence 6664 699999999999998753211 0 116888844 88888888
Q ss_pred -CccCCCCCCc
Q 014215 292 -CRFNHPDPVA 301 (428)
Q Consensus 292 -C~F~H~~~~~ 301 (428)
|.+.|+..-.
T Consensus 226 ~~~~~~ps~~~ 236 (285)
T COG5084 226 SCSLSHPSLNI 236 (285)
T ss_pred cccCCCccccC
Confidence 9999997654
No 9
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.75 E-value=4.6e-08 Score=95.34 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=129.3
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccc-cc
Q 014215 66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEV-SK 144 (428)
Q Consensus 66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~-s~ 144 (428)
.++.|.--...+.|.+++.|.|+|....... .....+.+++-|..|+..|.|.++.+|-|.|-...... .+
T Consensus 114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl--------~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~ 185 (351)
T COG5063 114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSL--------AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQP 185 (351)
T ss_pred cchhhhccccccccccCCCCcCCCccccccc--------cccCccccccceeEEecCCccccccccccccccccccCcch
Confidence 3556665544599999999999998876532 23445778889999999999999999999885543221 00
Q ss_pred ---ccc----ccCCCCcccccc--------------ccCccccccCccCcccccCCCCCC---CCCCCCC---CCCCCCC
Q 014215 145 ---SVL----NAFNLPIKLESK--------------GEGLMEKTVQIQCKFYQRTEGCKH---GEACRFS---HSTEKSE 197 (428)
Q Consensus 145 ---~~~----~~~~~p~~~~~~--------------~~~~~e~~~~~~C~~f~~~g~C~~---G~~C~f~---H~~~~~~ 197 (428)
... +...+++.+++. ...+ -+....+|.-|.+.|.|.+ |+.|.|+ |-....
T Consensus 186 l~~rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L-~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l- 263 (351)
T COG5063 186 LSQRKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPL-YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNEL- 263 (351)
T ss_pred hhccCcccCcCccccccccccccCchhhhhhhhhhccchh-hcCCHHHhhccCcCCCCccccccccccccccccccccc-
Confidence 000 011111111100 0001 1112367999999999999 9999999 763211
Q ss_pred CCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCC
Q 014215 198 NPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIEC 277 (428)
Q Consensus 198 ~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C 277 (428)
+. ...-...++.+|..|.+.|+|++|.+|.|.|..+..-. .. +....|+ ..-.|
T Consensus 264 -----------~~---k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie------~~--~~~~~~y----~~~~c 317 (351)
T COG5063 264 -----------KS---KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE------MY--EEASLGY----LDGPC 317 (351)
T ss_pred -----------cc---cccccccccCCccchhhcccCccccccccccCChhhcc------cc--ccccccc----ccccc
Confidence 00 00011235678999999999999999999998764311 00 0001111 13479
Q ss_pred ccccccccCCCCCCCccCCCCCCc
Q 014215 278 PFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 278 ~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
+-++++|.|.+|.+|.|.|.+...
T Consensus 318 rt~~~~g~~p~g~~~c~~~dkkn~ 341 (351)
T COG5063 318 RTRAKGGAFPSGGAVCKSFDKKNL 341 (351)
T ss_pred ccccccCccCCCCchhhccccchh
Confidence 999999999999999999987643
No 10
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.64 E-value=7.5e-08 Score=94.57 Aligned_cols=117 Identities=28% Similarity=0.572 Sum_probs=90.4
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccccccc
Q 014215 66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKS 145 (428)
Q Consensus 66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~ 145 (428)
...+|++|++ |+|+.|..|.|+|..+... . .+..|++|...|.|..|..|.+.|.+...
T Consensus 103 s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~--------------s-~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~----- 161 (285)
T COG5084 103 SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS--------------S-QGPPCRSFSLKGSCSSGPSCGYSHIDPDS----- 161 (285)
T ss_pred CCcccchhcc-ccCcCCCccccccCCCccc--------------c-cCCCcccccccceeccCCCCCccccCccc-----
Confidence 4568999995 9999999999999987652 1 36789999779999999999999987432
Q ss_pred ccccCCCCccccccccCccccccCccCccccc--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCcc
Q 014215 146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQR--TEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLI 223 (428)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~--~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~ 223 (428)
....|.+|.+ .+.|..|..|++.|...+.. .+..
T Consensus 162 ----------------------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~----------------------~~~~ 197 (285)
T COG5084 162 ----------------------FAGNCDQYSGATYGFCPLGASCKFSHTLKRVS----------------------YGSS 197 (285)
T ss_pred ----------------------ccccccccCcccccccCCCCcccccccccccc----------------------cccc
Confidence 2357888885 45999999999999976421 1112
Q ss_pred ccccccCCCCCCCCCC--------------CCcCCCCCC
Q 014215 224 GCKYHLSAGGCKYGNS--------------CKFSHSKEK 248 (428)
Q Consensus 224 ~C~~f~~~G~C~~G~~--------------C~f~H~~~~ 248 (428)
.|..++ .+.|..|.. |.+.|+...
T Consensus 198 p~~~y~-~~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~ 235 (285)
T COG5084 198 PCGNYT-PPFSPPGTPSESVSSWGYGKGTSCSLSHPSLN 235 (285)
T ss_pred ccccCc-CCcCCCCCCccccccccccccccccCCCcccc
Confidence 677776 477777776 888887653
No 11
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.58 E-value=5.4e-08 Score=96.04 Aligned_cols=197 Identities=23% Similarity=0.418 Sum_probs=112.5
Q ss_pred CCCccccccCCCCCCCC-CCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccccc
Q 014215 68 EDCPFYLRTGYCKFGFC-CKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV 146 (428)
Q Consensus 68 ~~C~~~~r~G~C~~G~~-C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~ 146 (428)
++|+-|+| +.|++|+. |||+|+.....+ +.-+-..|..|+ .|.|.+ ++|+|.|.....+.....
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V------------~~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkdql~i 102 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQV------------SNGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKDQLKI 102 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCCc------------cCCeEEEEeccc-cCccCc-ccceecCCChhhhhhhhh
Confidence 68999996 99999999 999999874421 112346799998 899998 679999998765432111
Q ss_pred cccCCCCcccc--ccccCccccccCccCc--ccccCCCCCCCC-CCCCCCCCCCC---CCCC------C--CCCCCCCc-
Q 014215 147 LNAFNLPIKLE--SKGEGLMEKTVQIQCK--FYQRTEGCKHGE-ACRFSHSTEKS---ENPL------P--FSGANGMK- 209 (428)
Q Consensus 147 ~~~~~~p~~~~--~~~~~~~e~~~~~~C~--~f~~~g~C~~G~-~C~f~H~~~~~---~~p~------~--~~~~~~~~- 209 (428)
-..+.+-+.+. +...........++|. .|..+ .|.-|. .|+|.|..... ..++ + +.+..++.
T Consensus 103 ngrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~~~-~~~~g~~~~s~~~y~~~~Pg~~vp~~~~p~~~~~~~g~p~v~~ 181 (331)
T KOG2494|consen 103 NGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFATG-PCLGGNTACSYWPYLPPVPGGLVPADGLPTTPVFVPGGPGVPG 181 (331)
T ss_pred cccccHHHHHHHHhhhcccccCCCcccccccccccc-ccccCCCccccccccCCCCCCCCCCcCCCCCccccCCCCcccc
Confidence 11111111110 0000000002457888 67766 777664 59999987621 0000 0 00111110
Q ss_pred --ccCCCCcccccCccccccccCCCCCCCC-CCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccC
Q 014215 210 --ESKGGSLVEMTGLIGCKYHLSAGGCKYG-NSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSC 286 (428)
Q Consensus 210 --~s~~~~~per~~~~~C~~f~~~G~C~~G-~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C 286 (428)
...........+.++|+. . .|.|.++ ..|.|+|........ +. .+ -...|..+.+ |.|
T Consensus 182 ~~~~~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~f~~~~k~~~~~-----s~--------~~---t~~~~~~~t~-~~~ 242 (331)
T KOG2494|consen 182 PGLVGGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQFAHPAKSIMID-----SN--------DN---TVEVCLRYTK-GRC 242 (331)
T ss_pred cccccccccccCCCCCCCcc-c-ccccccchhHHHHhhhhhhhhcc-----cC--------CC---cchhcccccc-cee
Confidence 001111222345678888 3 5888888 669999987532210 00 00 1135888844 888
Q ss_pred CCCCCCccCCCCCC
Q 014215 287 AYGVDCRFNHPDPV 300 (428)
Q Consensus 287 ~~G~~C~F~H~~~~ 300 (428)
- -++|++-|..-.
T Consensus 243 ~-~en~~~~~~~~h 255 (331)
T KOG2494|consen 243 E-TENCKYFHAPAH 255 (331)
T ss_pred c-hhcccccCchHH
Confidence 7 788988887643
No 12
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.56 E-value=6.1e-08 Score=95.66 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=93.8
Q ss_pred ccccccccCCCCCCCCCC-CCcCCCCCCcchhhhcccCCCcccccCCCCCCCC-CCCCccccccccCCCCCCCccCCCCC
Q 014215 222 LIGCKYHLSAGGCKYGNS-CKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVH-EIECPFYMRNGSCAYGVDCRFNHPDP 299 (428)
Q Consensus 222 ~~~C~~f~~~G~C~~G~~-C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~-e~~C~~y~~~G~C~~G~~C~F~H~~~ 299 (428)
..+||.|++ |.|.+|+. |||.|+...... .-+ -..|.+|++ |.|. .++|||.|+..
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V-------------------~~g~v~aC~Ds~k-grCs-R~nCkylHpp~ 94 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQV-------------------SNGRVIACFDSQK-GRCS-RENCKYLHPPQ 94 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCCCCCc-------------------cCCeEEEEecccc-CccC-cccceecCCCh
Confidence 368999997 99999999 999999864321 111 246999977 9999 57799999987
Q ss_pred Cc-----cCCCCCCCCCCCC-cccCCCcccccCCCCCCCCCC--CCCCcccccCCCCcCCcccc-CCCCCCCCCCccccC
Q 014215 300 VA-----DEGSDPFNEASDP-ASRSWSPDIISRKTVPNLDNH--SFHPHWMLKSKFNSLQGSVY-PQAKAELPLSSPALG 370 (428)
Q Consensus 300 ~~-----~~g~~p~~~~~~~-~~~~w~~~~~s~~~~p~~~~~--~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~s~~~~~ 370 (428)
.+ +.|..+++-+... ++...+. ..+-..+.++.+- ..+...+--=.+++|..++- +-....++|++..+.
T Consensus 95 hlkdql~ingrn~l~lq~~~aA~~~q~~-~~~g~Pi~~v~~f~~~~~~~g~~~~s~~~y~~~~Pg~~vp~~~~p~~~~~~ 173 (331)
T KOG2494|consen 95 HLKDQLKINGRNNLILQKTAAAMLAQQM-QGPGTPICSVPMFATGPCLGGNTACSYWPYLPPVPGGLVPADGLPTTPVFV 173 (331)
T ss_pred hhhhhhhhcccccHHHHHHHHhhhcccc-cCCCccccccccccccccccCCCccccccccCCCCCCCCCCcCCCCCcccc
Confidence 54 4565554311100 0000000 0000000000000 00011111113455665330 222334445444333
Q ss_pred CCCccCCCccccccccCCCCCCCccchhhhccCCCCCCCC-CcCCCCCCCC
Q 014215 371 NLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSA-CKFHHPKNGD 420 (428)
Q Consensus 371 ~~~~~~~~~~~~q~~~~p~r~~~~~C~~~~~~g~C~fg~~-C~y~Hp~~~~ 420 (428)
.+..........-.+.....+..+.|+- .+|.|-.++. |.|.||.+.+
T Consensus 174 ~g~p~v~~~~~~~~~k~~r~~~~e~~~~--~~gn~~r~e~d~~f~~~~k~~ 222 (331)
T KOG2494|consen 174 PGGPGVPGPGLVGGQKLLRSDRLEVCRE--QRGNCRRGEQDAQFAHPAKSI 222 (331)
T ss_pred CCCCcccccccccccccccCCCCCCCcc--cccccccchhHHHHhhhhhhh
Confidence 3222211111122466777778888888 6788888876 9999998665
No 13
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.42 E-value=2.8e-07 Score=89.98 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=80.5
Q ss_pred CCCccccccCCCCC---CCCCCCC---CCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccc
Q 014215 68 EDCPFYLRTGYCKF---GFCCKFN---HPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSE 141 (428)
Q Consensus 68 ~~C~~~~r~G~C~~---G~~C~F~---H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 141 (428)
.+|.-|.+.|+|++ |+.|.|+ |+..+..... ....++++.|..|.+.|.|++|.+|.|.|......
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i 302 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI 302 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccc--------cccccccCCccchhhcccCccccccccccCChhhc
Confidence 68999999999999 9999999 9977654311 11247889999999999999999999999876532
Q ss_pred ccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCC
Q 014215 142 VSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEK 195 (428)
Q Consensus 142 ~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~ 195 (428)
.- .+. ..-.+....|+-++.+|.|..|.+|.++|....
T Consensus 303 e~-----------~~~-----~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn 340 (351)
T COG5063 303 EM-----------YEE-----ASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKN 340 (351)
T ss_pred cc-----------ccc-----ccccccccccccccccCccCCCCchhhccccch
Confidence 10 000 001234568999999999999999999998754
No 14
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.20 E-value=4.8e-07 Score=58.00 Aligned_cols=26 Identities=38% Similarity=1.065 Sum_probs=20.8
Q ss_pred CCccchhhhccCCCCCCCCCcCCCCC
Q 014215 392 GEPLCDYFMKTGNCKYRSACKFHHPK 417 (428)
Q Consensus 392 ~~~~C~~~~~~g~C~fg~~C~y~Hp~ 417 (428)
+.++|++|+++|.|+||++|+|.|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 56789999999999999999999973
No 15
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.1e-06 Score=90.29 Aligned_cols=134 Identities=20% Similarity=0.386 Sum_probs=90.1
Q ss_pred cccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCC
Q 014215 113 QIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHS 192 (428)
Q Consensus 113 ~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~ 192 (428)
+..|-||+ ...|++++.|.|+|..... -...+|++|+.+-.|.. .|+|+|.
T Consensus 3 ~~dcyff~-ys~cKk~d~c~~rh~E~al--------------------------~n~t~C~~w~~~~~C~k--~C~YRHS 53 (667)
T KOG4791|consen 3 GEDCYFFF-YSTCKKGDSCPFRHCEAAL--------------------------GNETVCTLWQEGRCCRK--VCRYRHS 53 (667)
T ss_pred cccchhhh-hhhhhccCcCcchhhHHHh--------------------------cCcchhhhhhhcCcccc--cccchhh
Confidence 45798998 8999999999999976542 12468999999955664 9999999
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCC--CCcchhhhc-ccCCCcccccCC--
Q 014215 193 TEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSK--EKPQTYIKK-SEKASPELNFLG-- 267 (428)
Q Consensus 193 ~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~--~~~~~~~~~-~~~~~~~~n~~g-- 267 (428)
.-.. .....+|.++.+...|.. .+|-|.|.. .+.. +.. ...+.++.....
T Consensus 54 e~~~----------------------kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~--l~~~p~~pe~ev~~~~~S 108 (667)
T KOG4791|consen 54 EIDK----------------------KRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGV--LPTVPESPEEEVKASQLS 108 (667)
T ss_pred HHhh----------------------hcCcccceeecCCCccCC-CccccccCCCchhhh--ccCCCCCccccccccccc
Confidence 6421 123478999998666986 789999933 2211 100 001111110000
Q ss_pred -CC--CCCCCCCCccccccccCCCCCCCccCCCCCCc
Q 014215 268 -LP--IRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 268 -~P--~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
.+ +...-.+|-++++ |.|..++.|-|.|+.++.
T Consensus 109 Aq~~sV~~~p~P~l~~~K-~~e~~~D~~s~Lh~P~A~ 144 (667)
T KOG4791|consen 109 AQQNSVQSNPSPQLRSVK-KVESSEDVPSPLHPPVAI 144 (667)
T ss_pred CCCcccccCCchHHHHhh-hhhhhccccccCCCCccc
Confidence 00 1112357999988 999999999999998665
No 16
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.12 E-value=5.3e-07 Score=57.81 Aligned_cols=26 Identities=42% Similarity=0.929 Sum_probs=20.8
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCC
Q 014215 66 FAEDCPFYLRTGYCKFGFCCKFNHPV 91 (428)
Q Consensus 66 ~~~~C~~~~r~G~C~~G~~C~F~H~~ 91 (428)
++++|++|+++|.|++|++|+|+|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 57889999999999999999999973
No 17
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=2.5e-06 Score=87.61 Aligned_cols=134 Identities=22% Similarity=0.394 Sum_probs=87.8
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccC-CCCCCCCCcccCCCcccccccc
Q 014215 68 EDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGG-CKHGEACRFKHSIEKSEVSKSV 146 (428)
Q Consensus 68 ~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~-C~~G~~C~f~H~~~~~~~s~~~ 146 (428)
.+|.||+ ...||+++.|.|.|--.-.. .-..|++|+ .+. |+. .|.|.|..-..
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~----------------n~t~C~~w~-~~~~C~k--~C~YRHSe~~~------ 57 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALG----------------NETVCTLWQ-EGRCCRK--VCRYRHSEIDK------ 57 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhc----------------Ccchhhhhh-hcCcccc--cccchhhHHhh------
Confidence 4698888 69999999999999654431 246899999 555 554 99999975432
Q ss_pred cccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCc---ccCCCCcccc-cC
Q 014215 147 LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFS-GANGMK---ESKGGSLVEM-TG 221 (428)
Q Consensus 147 ~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~-~~~~~~---~s~~~~~per-~~ 221 (428)
++....|.++.++..|.. .+|-|+|..+......+.. ++.-+. .+.+...+.- ..
T Consensus 58 -------------------kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~ 117 (667)
T KOG4791|consen 58 -------------------KRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSN 117 (667)
T ss_pred -------------------hcCcccceeecCCCccCC-CccccccCCCchhhhccCCCCCcccccccccccCCCcccccC
Confidence 123568999999966997 8999999764322111100 000000 0000011101 12
Q ss_pred ccccccccCCCCCCCCCCCCcCCCCCC
Q 014215 222 LIGCKYHLSAGGCKYGNSCKFSHSKEK 248 (428)
Q Consensus 222 ~~~C~~f~~~G~C~~G~~C~f~H~~~~ 248 (428)
..+|-+|++ +.|..++.|-|.|++..
T Consensus 118 p~P~l~~~K-~~e~~~D~~s~Lh~P~A 143 (667)
T KOG4791|consen 118 PSPQLRSVK-KVESSEDVPSPLHPPVA 143 (667)
T ss_pred CchHHHHhh-hhhhhccccccCCCCcc
Confidence 256888986 99999999999999854
No 18
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.72 E-value=0.0001 Score=77.41 Aligned_cols=186 Identities=23% Similarity=0.353 Sum_probs=106.9
Q ss_pred CCccccc-cCCCCCCCC-CCCCCCCCCccCCcccccCCCcccCccccccccccccccCCC-CCCCCCcccCCCccccccc
Q 014215 69 DCPFYLR-TGYCKFGFC-CKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCK-HGEACRFKHSIEKSEVSKS 145 (428)
Q Consensus 69 ~C~~~~r-~G~C~~G~~-C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~-~G~~C~f~H~~~~~~~s~~ 145 (428)
+|.-|.. +|.|..|+. |-+.|-.......+ .+ -...++-.|-.=. .|.|- .+..|-|.|.....+..-.
T Consensus 78 ~~~~~~e~~~~C~~~~~~C~~~g~s~~~~e~~------~h-L~~~k~~~~~tda-~g~~~~~v~~~~~~~~~~~~r~~~~ 149 (528)
T KOG1595|consen 78 YCTKYDEVTGICPDGDEHCAVLGRSVGDTERT------YH-LRYYKTLPCVTDA-RGNCVKNVLHCAFAHGPNDLRPPVE 149 (528)
T ss_pred eecchhhccccCCCCcccchhcccccCCccee------Ee-ccccccccCcccc-CCCcccCcccccccCCccccccHHH
Confidence 4555543 599999998 99999753322110 01 1123445554333 67776 4678999998886543211
Q ss_pred ccccCC----CCcc---cc--------ccccCccc-------------cccCccCcccccCCCCCCCCCCCCCCCCCCCC
Q 014215 146 VLNAFN----LPIK---LE--------SKGEGLME-------------KTVQIQCKFYQRTEGCKHGEACRFSHSTEKSE 197 (428)
Q Consensus 146 ~~~~~~----~p~~---~~--------~~~~~~~e-------------~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~ 197 (428)
.+..++ ++.. .. ..++.++. ..++..|. |. .|--+-.|+|.|+-....
T Consensus 150 ~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~~~ys~DeFrMy~fKir~C~---R~-~shDwteCPf~HpgEkAR 225 (528)
T KOG1595|consen 150 DLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWPDINGIYSSDEFRMYSFKIRRCS---RP-RSHDWTECPFAHPGEKAR 225 (528)
T ss_pred HHHhcccccCccCCCcccccccccccccCCCCcccccccccccceEEEeeeecccC---Cc-cCCCcccCCccCCCcccc
Confidence 111111 1100 00 01112221 00223332 22 566678999999754221
Q ss_pred CCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCC
Q 014215 198 NPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIEC 277 (428)
Q Consensus 198 ~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C 277 (428)
. .....|. +.-.+|..|.+ |.|.+|+.|.|.|...+.- + .|.+=....|
T Consensus 226 R------------RDPRkyh--Ys~tpCPefrk-G~C~rGD~CEyaHgvfEcw------------L----HPa~YRT~~C 274 (528)
T KOG1595|consen 226 R------------RDPRKYH--YSSTPCPEFRK-GSCERGDSCEYAHGVFECW------------L----HPARYRTRKC 274 (528)
T ss_pred c------------CCccccc--ccCccCccccc-CCCCCCCccccccceehhh------------c----CHHHhccccc
Confidence 0 0001111 34578999986 9999999999999886532 1 2233345689
Q ss_pred ccccccccCCCCCCCccCCCCCCc
Q 014215 278 PFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 278 ~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
..- |.|++ .-|.|+|.....
T Consensus 275 kDg---~~C~R-rvCfFAH~~eqL 294 (528)
T KOG1595|consen 275 KDG---GYCPR-RVCFFAHSPEQL 294 (528)
T ss_pred cCC---CCCcc-ceEeeecChHHh
Confidence 997 89997 999999988754
No 19
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.48 E-value=7.1e-05 Score=47.32 Aligned_cols=25 Identities=36% Similarity=0.950 Sum_probs=22.1
Q ss_pred ccccccccccccCCCCCCCCCcccCC
Q 014215 112 GQIQCKFYQSTGGCKHGEACRFKHSI 137 (428)
Q Consensus 112 ~~~~C~~f~~~G~C~~G~~C~f~H~~ 137 (428)
+..+|++| +.|.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 56789999 59999999999999973
No 20
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.39 E-value=0.00012 Score=46.21 Aligned_cols=24 Identities=42% Similarity=1.090 Sum_probs=21.2
Q ss_pred CCCCccccccccCCCCCCCccCCCC
Q 014215 274 EIECPFYMRNGSCAYGVDCRFNHPD 298 (428)
Q Consensus 274 e~~C~~y~~~G~C~~G~~C~F~H~~ 298 (428)
+.+|++| ++|.|.+|++|+|.|..
T Consensus 4 ~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 4589999 77999999999999973
No 21
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=97.33 E-value=0.00046 Score=73.97 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215 83 FCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 83 ~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
..|.+.|+........ ..--..|+|+. .|. +..|.|.|+...
T Consensus 525 ~~s~s~~s~~~~~ltk-----------~k~l~~Cky~~---~Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 525 PDSLSRHSEKKNELTK-----------AKILTRCKYGP---ACT-SAECEFAHPTAA 566 (681)
T ss_pred CcchhhCccccccccc-----------ceeeccccCCC---cCC-chhhhhcCCcch
Confidence 3577888765542211 11134699998 788 799999998765
No 22
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.10 E-value=0.0005 Score=72.32 Aligned_cols=96 Identities=21% Similarity=0.402 Sum_probs=72.0
Q ss_pred cccccccccccccCCCCCCCCCcccCCCccccc-ccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215 111 LGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVS-KSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF 189 (428)
Q Consensus 111 ~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s-~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f 189 (428)
+|.+.|. .+.|.-+-.|.|.|+....+-. +... ......|.-|-+| .|..|+.|-|
T Consensus 199 fKir~C~----R~~shDwteCPf~HpgEkARRRDPRky------------------hYs~tpCPefrkG-~C~rGD~CEy 255 (528)
T KOG1595|consen 199 FKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRKY------------------HYSSTPCPEFRKG-SCERGDSCEY 255 (528)
T ss_pred eeecccC----CccCCCcccCCccCCCcccccCCcccc------------------cccCccCcccccC-CCCCCCcccc
Confidence 6777887 5689999999999977654321 1100 1245689999996 9999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcc
Q 014215 190 SHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQ 250 (428)
Q Consensus 190 ~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 250 (428)
.|..-.. ...|+++++..|+.- |.|++ .-|-|+|.....+
T Consensus 256 aHgvfEc-----------------wLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR 295 (528)
T KOG1595|consen 256 AHGVFEC-----------------WLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR 295 (528)
T ss_pred ccceehh-----------------hcCHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence 9996431 224678888999984 89999 8899999987543
No 23
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=96.91 E-value=0.00017 Score=70.44 Aligned_cols=82 Identities=24% Similarity=0.625 Sum_probs=51.5
Q ss_pred ccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccc------------cccCccccccCccCccccc
Q 014215 110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLES------------KGEGLMEKTVQIQCKFYQR 177 (428)
Q Consensus 110 ~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~------------~~~~~~e~~~~~~C~~f~~ 177 (428)
-++..+|.||. .|.|..|+.|+|+|+....+-...... ++..+.. .-.+-+-.....+|+||+.
T Consensus 89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dl---y~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe 164 (343)
T KOG1763|consen 89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDL---YPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE 164 (343)
T ss_pred CchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhc---cccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 46788999996 999999999999999876542211000 0000000 0000111124568999974
Q ss_pred C------C---CCCCCC-CCCCCCCCCC
Q 014215 178 T------E---GCKHGE-ACRFSHSTEK 195 (428)
Q Consensus 178 ~------g---~C~~G~-~C~f~H~~~~ 195 (428)
. | .|++|. .|.|.|-.+.
T Consensus 165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 165 AVENGKYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred HHhcCCccceeECCCCCCeeeeeecCCc
Confidence 3 3 399976 7999999864
No 24
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.89 E-value=0.00054 Score=69.74 Aligned_cols=40 Identities=28% Similarity=0.675 Sum_probs=32.4
Q ss_pred CCCCCCCCCCccccccccCCCCCCCccCCCCCCccCCCCCC
Q 014215 268 LPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPF 308 (428)
Q Consensus 268 ~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~~p~ 308 (428)
+|....-.+|+||+. |.|+||.+|||.|+....+....++
T Consensus 134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~lsslr~y 173 (486)
T KOG2185|consen 134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDVPLSSLRNY 173 (486)
T ss_pred cCcchhhccchHhhc-cccccCcccccccCcccchhhcccC
Confidence 444445678999988 9999999999999998777666555
No 25
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=96.89 E-value=0.00022 Score=69.71 Aligned_cols=78 Identities=26% Similarity=0.546 Sum_probs=51.3
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCccCCc------ccccC-CC-----cc-------cCcccccccccccc--
Q 014215 63 SRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGL------KENER-GG-----FV-------GQHLGQIQCKFYQS-- 121 (428)
Q Consensus 63 ~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~------~~~~~-~~-----~~-------~~~~~~~~C~~f~~-- 121 (428)
+.|...+|.||. .|+|..|+.|+|+|+....+-.. ..+.. |- .+ +....-.+|+||+-
T Consensus 88 vDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv 166 (343)
T KOG1763|consen 88 VDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV 166 (343)
T ss_pred CCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence 456778999998 69999999999999876544211 11111 10 00 11123458999972
Q ss_pred ----cc---CCCCCC-CCCcccCCCccc
Q 014215 122 ----TG---GCKHGE-ACRFKHSIEKSE 141 (428)
Q Consensus 122 ----~G---~C~~G~-~C~f~H~~~~~~ 141 (428)
.| .|.+|. .|.|.|-....-
T Consensus 167 E~~kYGWfW~CPnGg~~C~YrHaLP~Gy 194 (343)
T KOG1763|consen 167 ENGKYGWFWECPNGGDKCIYRHALPEGY 194 (343)
T ss_pred hcCCccceeECCCCCCeeeeeecCCcch
Confidence 33 399875 899999887643
No 26
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=96.58 E-value=0.005 Score=66.27 Aligned_cols=163 Identities=21% Similarity=0.411 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccc-ccccc-CCCCCCCCCcccCCCcccccccccccCCCCcc
Q 014215 78 YCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKF-YQSTG-GCKHGEACRFKHSIEKSEVSKSVLNAFNLPIK 155 (428)
Q Consensus 78 ~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-f~~~G-~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~ 155 (428)
.|+++..|.|.|+.-+... ..+.+.|+. |...| .|.+ ..|.+.|......+..
T Consensus 486 ~~~estrEe~~~~~~r~~~-------------~~rk~s~p~i~~~~~~~~s~-~~s~s~~s~~~~~ltk----------- 540 (681)
T KOG3702|consen 486 PVTESTREEFVPPTLRTGR-------------PLRKASQPTIFVANGHGGSN-PDSLSRHSEKKNELTK----------- 540 (681)
T ss_pred cccccccccccCcccccCC-------------cccccCCCceecccccccCC-CcchhhCccccccccc-----------
Confidence 6777889999998766532 223334441 11122 2333 5778888765432210
Q ss_pred ccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccc--cCccccccccCCCC
Q 014215 156 LESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM--TGLIGCKYHLSAGG 233 (428)
Q Consensus 156 ~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per--~~~~~C~~f~~~G~ 233 (428)
.+ ....|+|+. .|. +..|.|.|+...... .++. .-.++++ ...+.|.+- -.
T Consensus 541 ---------~k-~l~~Cky~~---~Ct-~a~Ce~~HPtaa~~~-~s~p---------~k~fa~~~~ks~p~Ck~~---~k 593 (681)
T KOG3702|consen 541 ---------AK-ILTRCKYGP---ACT-SAECEFAHPTAAENA-KSLP---------NKKFASKCLKSHPGCKFG---KK 593 (681)
T ss_pred ---------ce-eeccccCCC---cCC-chhhhhcCCcchhhh-hccc---------cccccccceecccccccc---cc
Confidence 01 134799888 687 899999999754100 0000 0011111 122345442 23
Q ss_pred CCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCccCCC
Q 014215 234 CKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGS 305 (428)
Q Consensus 234 C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~ 305 (428)
|.. .+|.|.|........ . .+... -..|.+ -..+|+|+ |.|+ ...|+|.||+.+-.+-.
T Consensus 594 Cta-sDC~~sH~~~~~pvq-~---t~ip~-~~~~~t---i~~~CrY~---pnCr-nm~C~F~HPk~cRf~~~ 652 (681)
T KOG3702|consen 594 CTA-SDCNYSHAGRRIPVQ-P---TRIPP-PFPGGT---IRGLCRYR---PNCR-NMQCKFYHPKTCRFNTN 652 (681)
T ss_pred ccc-ccCcccccCCCCCCc-c---ccCCC-CCCCCC---ccccceec---cCcC-CccccccCCcccccccc
Confidence 543 568899987642000 0 00000 011122 24689999 8898 78999999999876533
No 27
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.43 E-value=0.0011 Score=69.01 Aligned_cols=59 Identities=27% Similarity=0.572 Sum_probs=46.1
Q ss_pred CCCCcccccc--CCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCccc
Q 014215 67 AEDCPFYLRT--GYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKH 135 (428)
Q Consensus 67 ~~~C~~~~r~--G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H 135 (428)
..+|.-..+. ..|.||++|+|.|+.........+. -.+.|..|.+.|.|.+|-.|+|+-
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~D----------ig~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPD----------IGPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCcc----------cCCccceeeccccCCccceeehhh
Confidence 4579998876 5899999999999987654322111 125799999999999999999963
No 28
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.99 E-value=0.0037 Score=63.80 Aligned_cols=60 Identities=27% Similarity=0.523 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCccC-------Cccccc---CCCcccCccccccccccccccCCCCCCCCCcccCCCccc
Q 014215 81 FGFCCKFNHPVRGDFQ-------GLKENE---RGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSE 141 (428)
Q Consensus 81 ~G~~C~F~H~~~~~~~-------~~~~~~---~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 141 (428)
-|++|.+-|......- ++.... +....|....+.+|+||+ .|.|+++++|+|+|...-..
T Consensus 98 ~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V~l 167 (486)
T KOG2185|consen 98 DGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDVPL 167 (486)
T ss_pred cCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhh-ccccccCcccccccCcccch
Confidence 3778887776554321 111111 122345667899999999 99999999999999876543
No 29
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.87 E-value=0.0059 Score=35.85 Aligned_cols=19 Identities=42% Similarity=0.889 Sum_probs=16.5
Q ss_pred CCccccccCCCCCCCCCCCCCC
Q 014215 69 DCPFYLRTGYCKFGFCCKFNHP 90 (428)
Q Consensus 69 ~C~~~~r~G~C~~G~~C~F~H~ 90 (428)
.|+||. .|+++++|.|.|+
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 489885 5999999999996
No 30
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.81 E-value=0.0055 Score=35.99 Aligned_cols=19 Identities=42% Similarity=1.115 Sum_probs=16.6
Q ss_pred cccccccccCCCCCCCCCcccC
Q 014215 115 QCKFYQSTGGCKHGEACRFKHS 136 (428)
Q Consensus 115 ~C~~f~~~G~C~~G~~C~f~H~ 136 (428)
+||||. .|++++.|.|+|+
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 499886 4999999999995
No 31
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=95.34 E-value=0.0041 Score=59.28 Aligned_cols=76 Identities=24% Similarity=0.523 Sum_probs=50.3
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCccCC--c---c-cccCCCc--ccC--c-ccccccccccc---cc-----
Q 014215 63 SRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQG--L---K-ENERGGF--VGQ--H-LGQIQCKFYQS---TG----- 123 (428)
Q Consensus 63 ~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~--~---~-~~~~~~~--~~~--~-~~~~~C~~f~~---~G----- 123 (428)
+.|.+.+|..|+ .+.|..|+.|+|+|+..+.+.. . . -+....+ +.. | .-..+|+||+. +|
T Consensus 81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 346678999998 7999999999999996654421 0 0 0111111 111 2 23468999972 22
Q ss_pred -CCCCC-CCCCcccCCCc
Q 014215 124 -GCKHG-EACRFKHSIEK 139 (428)
Q Consensus 124 -~C~~G-~~C~f~H~~~~ 139 (428)
.|.+| .+|-|.|....
T Consensus 160 W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeCCCCCceeeeeeccCc
Confidence 39987 59999998876
No 32
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.18 E-value=0.0085 Score=62.71 Aligned_cols=62 Identities=31% Similarity=0.645 Sum_probs=44.6
Q ss_pred ccccccccCC--CCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccC--CC
Q 014215 222 LIGCKYHLSA--GGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFN--HP 297 (428)
Q Consensus 222 ~~~C~~f~~~--G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~--H~ 297 (428)
...|.-.... ..|.+|++|+|.|....-.. .++..+ ++.|++|...|.|.||-.|||. |-
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLa-------------tK~~Di---g~~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLA-------------TKAPDI---GPSCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHh-------------ccCccc---CCccceeeccccCCccceeehhhccc
Confidence 4678876654 48999999999998754211 011111 2579999999999999999996 54
Q ss_pred CC
Q 014215 298 DP 299 (428)
Q Consensus 298 ~~ 299 (428)
+.
T Consensus 140 d~ 141 (614)
T KOG2333|consen 140 DI 141 (614)
T ss_pred Cc
Confidence 43
No 33
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=95.04 E-value=0.0061 Score=58.17 Aligned_cols=80 Identities=20% Similarity=0.490 Sum_probs=52.1
Q ss_pred CccccccccccccccCCCCCCCCCcccCCCcccccc-------cccccCCCCccccccccCccccccCccCcccccC---
Q 014215 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSK-------SVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT--- 178 (428)
Q Consensus 109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~-------~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~--- 178 (428)
..++..+|..|+ .+.|..|+.|.|+|+....+.+. ......++|+... |--....+|+||...
T Consensus 81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~kr------P~intd~VCkffieA~e~ 153 (299)
T COG5252 81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKR------PWINTDRVCKFFIEAMES 153 (299)
T ss_pred cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccC------CCCChhHHHHHHHHHHhc
Confidence 346788999998 99999999999999976644221 0111123333211 000134689999742
Q ss_pred ---C---CCCCC-CCCCCCCCCCC
Q 014215 179 ---E---GCKHG-EACRFSHSTEK 195 (428)
Q Consensus 179 ---g---~C~~G-~~C~f~H~~~~ 195 (428)
| .|++| .+|.|.|..+.
T Consensus 154 GkYgw~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 154 GKYGWGWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred CCccceeeCCCCCceeeeeeccCc
Confidence 2 49997 57999999764
No 34
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.94 E-value=0.032 Score=54.09 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=25.8
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 014215 65 PFAEDCPFYLRTGYCKFGFCCKFNHPVRGDF 95 (428)
Q Consensus 65 ~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~ 95 (428)
..+..|.||+++|.|..|+.|.-.|......
T Consensus 13 kdKv~c~fy~k~gacR~gdrcsR~h~kpt~s 43 (260)
T KOG2202|consen 13 KDKVNCSFYFKIGACRHGDRCSRLHEKPTFS 43 (260)
T ss_pred ccccccchHHhhcccccccHHHHhhcccccc
Confidence 3456799999999999999998888766544
No 35
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.96 E-value=0.064 Score=50.14 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=24.7
Q ss_pred CCCCccccccccCCCCCCCccCCCCCCc
Q 014215 274 EIECPFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 274 e~~C~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
..+|..|..||+|-||+.|+|.|....-
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhh
Confidence 4589999999999999999999987643
No 36
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.69 E-value=0.064 Score=50.14 Aligned_cols=31 Identities=39% Similarity=0.719 Sum_probs=27.0
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCccCCc
Q 014215 68 EDCPFYLRTGYCKFGFCCKFNHPVRGDFQGL 98 (428)
Q Consensus 68 ~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~ 98 (428)
-+|+-|-.+|.|-||++|+|+|.......++
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~D~KtGW 172 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRSDFKTGW 172 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhhhhhccc
Confidence 4799999999999999999999987665554
No 37
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.39 E-value=0.38 Score=49.18 Aligned_cols=25 Identities=48% Similarity=1.157 Sum_probs=23.5
Q ss_pred ccccccccccCCCCCCCCCcccCCCc
Q 014215 114 IQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 114 ~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
.+|+||+ .|.|++|+.|+|+|+...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCch
Confidence 7999998 899999999999999884
No 38
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=84.13 E-value=0.73 Score=28.42 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=19.1
Q ss_pred cCcccccCCCCCCCCCCCCCCCC
Q 014215 171 QCKFYQRTEGCKHGEACRFSHST 193 (428)
Q Consensus 171 ~C~~f~~~g~C~~G~~C~f~H~~ 193 (428)
+|.|-++||.|.- +.|.|.|.+
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QHfr 23 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQHFR 23 (23)
T ss_pred CCccccCCCeeCC-CCCCccccC
Confidence 7999999999974 899999963
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.14 E-value=0.37 Score=47.80 Aligned_cols=32 Identities=31% Similarity=0.616 Sum_probs=27.2
Q ss_pred CCCccccccccCCCCCCCccCCCCCCccCCCC
Q 014215 275 IECPFYMRNGSCAYGVDCRFNHPDPVADEGSD 306 (428)
Q Consensus 275 ~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~~ 306 (428)
-+|..|..||+|-||+.|+|.|-...--.|.+
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~DyK~GWq 218 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSDYKAGWQ 218 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhhccccce
Confidence 58999999999999999999999876544443
No 40
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=82.88 E-value=0.24 Score=48.14 Aligned_cols=28 Identities=29% Similarity=0.820 Sum_probs=24.6
Q ss_pred CccCcccccCCCCCCCCCCCCCCCCCCC
Q 014215 169 QIQCKFYQRTEGCKHGEACRFSHSTEKS 196 (428)
Q Consensus 169 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 196 (428)
..-|.||.+.|.|.+|+.|.-.|.++..
T Consensus 15 Kv~c~fy~k~gacR~gdrcsR~h~kpt~ 42 (260)
T KOG2202|consen 15 KVNCSFYFKIGACRHGDRCSRLHEKPTF 42 (260)
T ss_pred ccccchHHhhcccccccHHHHhhccccc
Confidence 3579999999999999999999998753
No 41
>PHA03096 p28-like protein; Provisional
Probab=79.89 E-value=0.069 Score=53.16 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.8
Q ss_pred cCCCCCCCccCCCCCCccCCCCCCC
Q 014215 285 SCAYGVDCRFNHPDPVADEGSDPFN 309 (428)
Q Consensus 285 ~C~~G~~C~F~H~~~~~~~g~~p~~ 309 (428)
.|.+|+.|.|.|++.+++||...++
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lh 154 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLH 154 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcC
Confidence 5889999999999999999998775
No 42
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=79.76 E-value=1.2 Score=27.50 Aligned_cols=21 Identities=38% Similarity=1.004 Sum_probs=18.3
Q ss_pred CCccccccccCCCCCCCccCCC
Q 014215 276 ECPFYMRNGSCAYGVDCRFNHP 297 (428)
Q Consensus 276 ~C~~y~~~G~C~~G~~C~F~H~ 297 (428)
+|+|-++.|.|. -+.|.|.|-
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCccccCCCeeC-CCCCCcccc
Confidence 699998866997 789999995
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=0.9 Score=45.14 Aligned_cols=25 Identities=36% Similarity=0.951 Sum_probs=22.1
Q ss_pred ccchhhhccCCCCCCCCCcCCCCCC
Q 014215 394 PLCDYFMKTGNCKYRSACKFHHPKN 418 (428)
Q Consensus 394 ~~C~~~~~~g~C~fg~~C~y~Hp~~ 418 (428)
-+|.-|--||.|-||++|+|.|=..
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~ 211 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRS 211 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhh
Confidence 4599999999999999999999553
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.66 E-value=4.3 Score=41.28 Aligned_cols=25 Identities=32% Similarity=1.039 Sum_probs=23.1
Q ss_pred CCCCccccccccCCCCCCCccCCCCC
Q 014215 274 EIECPFYMRNGSCAYGVDCRFNHPDP 299 (428)
Q Consensus 274 e~~C~~y~~~G~C~~G~~C~F~H~~~ 299 (428)
..+|.||.+ |.|++|+.|.|+|..+
T Consensus 161 p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred Cccccceee-ccccccccccccccCC
Confidence 469999988 8999999999999998
No 45
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=43.99 E-value=9.1 Score=24.37 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=5.9
Q ss_pred CCCCCCCCc
Q 014215 404 NCKYRSACK 412 (428)
Q Consensus 404 ~C~fg~~C~ 412 (428)
.|+||.+|.
T Consensus 2 ~C~YG~~CY 10 (26)
T PF10283_consen 2 PCKYGAKCY 10 (26)
T ss_dssp E-TTGGG-S
T ss_pred CCCcchhhh
Confidence 599999996
No 46
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=42.85 E-value=15 Score=37.52 Aligned_cols=30 Identities=30% Similarity=0.642 Sum_probs=24.8
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCC
Q 014215 63 SRPFAEDCPFYLRTGYCKFGFCCKFNHPVRG 93 (428)
Q Consensus 63 ~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~ 93 (428)
.|-..-+|.||. .|.|++|+.|.|.|...+
T Consensus 157 krn~p~Icsf~v-~geckRG~ec~yrhEkp~ 186 (377)
T KOG0153|consen 157 KRNRPHICSFFV-KGECKRGAECPYRHEKPP 186 (377)
T ss_pred cCCCCcccccee-eccccccccccccccCCC
Confidence 444556899999 589999999999998773
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=20.00 E-value=37 Score=36.16 Aligned_cols=30 Identities=50% Similarity=0.721 Sum_probs=24.2
Q ss_pred CCCCccccccccchhhhhhhhhhhHHHHHH
Q 014215 2 VDDDGWEDNAAGTWAEESCWSQKREQEEEL 31 (428)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 31 (428)
.|||.-|-.|.||||.|+=|...++.-++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (472)
T PRK03003 1 YDDDEAEMRADGTWADESDWELDDEDLAEL 30 (472)
T ss_pred CCcchhhhhhhhhhccccccccchhhHHhh
Confidence 378888999999999999998777655444
Done!