Query 014215
Match_columns 428
No_of_seqs 334 out of 1473
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 07:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.4 2.4E-13 8.1E-18 107.9 5.1 67 66-178 9-75 (77)
2 2d9n_A Cleavage and polyadenyl 99.4 4.3E-13 1.5E-17 106.4 5.0 58 109-195 6-63 (77)
3 1m9o_A Tristetraproline; Cys3H 99.3 5.4E-13 1.8E-17 105.4 4.4 67 64-138 9-75 (77)
4 1m9o_A Tristetraproline; Cys3H 99.2 3.8E-12 1.3E-16 100.5 3.7 68 109-194 8-75 (77)
5 2cqe_A KIAA1064 protein; CCCH 99.2 2.1E-12 7.2E-17 107.0 1.8 84 168-285 12-95 (98)
6 2rhk_C Cleavage and polyadenyl 99.2 6.4E-12 2.2E-16 98.3 2.5 57 64-139 13-69 (72)
7 2cqe_A KIAA1064 protein; CCCH 99.2 2.5E-11 8.6E-16 100.5 5.7 58 59-139 5-62 (98)
8 2rhk_C Cleavage and polyadenyl 99.2 6.8E-12 2.3E-16 98.2 2.0 57 110-195 13-69 (72)
9 3d2q_A Muscleblind-like protei 98.9 4.9E-10 1.7E-14 87.1 3.0 60 67-139 6-66 (70)
10 3d2q_A Muscleblind-like protei 98.9 6.5E-10 2.2E-14 86.4 2.9 61 111-194 4-65 (70)
11 3d2n_A Muscleblind-like protei 98.8 1.8E-09 6.2E-14 86.6 3.7 61 109-194 5-66 (83)
12 2e5s_A Otthump00000018578; ZF- 98.8 1E-09 3.5E-14 90.8 0.8 61 111-194 18-79 (98)
13 2e5s_A Otthump00000018578; ZF- 98.8 2.8E-09 9.5E-14 88.2 3.4 60 67-139 20-80 (98)
14 3d2n_A Muscleblind-like protei 98.7 5.8E-09 2E-13 83.7 3.4 59 67-140 9-68 (83)
15 2rpp_A Muscleblind-like protei 98.6 1.4E-08 4.7E-13 82.4 3.9 60 110-194 14-74 (89)
16 2rpp_A Muscleblind-like protei 98.5 2.8E-08 9.7E-13 80.6 2.9 58 67-139 17-75 (89)
17 3u9g_A Zinc finger CCCH-type a 98.4 1.7E-07 5.7E-12 87.6 4.8 96 115-250 91-201 (229)
18 3u9g_A Zinc finger CCCH-type a 98.1 2.9E-06 1E-10 79.2 5.5 95 171-300 91-199 (229)
19 2lhn_A Nuclear polyadenylated 96.9 4E-06 1.4E-10 66.4 0.0 65 67-194 9-73 (80)
20 2lhn_A Nuclear polyadenylated 96.5 2.6E-05 8.7E-10 61.8 0.0 68 169-302 9-76 (80)
21 2d9m_A Zinc finger CCCH-type d 96.7 0.00057 1.9E-08 52.3 1.7 28 67-95 20-47 (69)
22 2d9m_A Zinc finger CCCH-type d 96.2 0.0011 3.7E-08 50.8 0.9 25 275-300 21-45 (69)
23 2fc6_A Nuclear, target of EGR1 96.0 0.0017 5.7E-08 46.2 0.9 28 112-139 19-46 (50)
24 2fc6_A Nuclear, target of EGR1 93.2 0.038 1.3E-06 39.3 1.9 28 273-300 19-46 (50)
25 3u1l_A PRE-mRNA-splicing facto 91.3 0.049 1.7E-06 51.6 0.8 26 275-301 71-96 (240)
26 3u1l_A PRE-mRNA-splicing facto 88.3 0.12 4.2E-06 48.8 1.0 27 112-139 69-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 74.5 0.63 2.2E-05 43.4 0.0 25 274-301 192-216 (223)
28 3v33_A Ribonuclease ZC3H12A; r 55.1 2.5 8.6E-05 39.3 0.0 24 67-93 192-215 (223)
29 2kqb_A Aprataxin and PNK-like 24.5 48 0.0016 26.3 2.8 17 78-94 16-41 (89)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=107.89 Aligned_cols=67 Identities=30% Similarity=0.576 Sum_probs=56.7
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccccccc
Q 014215 66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKS 145 (428)
Q Consensus 66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~ 145 (428)
.+.+|+||++ |.|++|++|+|+|+.... ++++|+||++.|.|. |+.|+|+|.....
T Consensus 9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~----- 64 (77)
T 2d9n_A 9 KTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES----- 64 (77)
T ss_dssp TTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-----
T ss_pred cceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc-----
Confidence 5678999996 999999999999987643 356899999669999 8999999987642
Q ss_pred ccccCCCCccccccccCccccccCccCcccccC
Q 014215 146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT 178 (428)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~ 178 (428)
+..+|.+|.++
T Consensus 65 ----------------------~~~~C~~f~~g 75 (77)
T 2d9n_A 65 ----------------------KIKDCPWSGPS 75 (77)
T ss_dssp ----------------------SCSSSSCCTTT
T ss_pred ----------------------cCCCCcccccC
Confidence 24699999987
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.3e-13 Score=106.41 Aligned_cols=58 Identities=28% Similarity=0.681 Sum_probs=49.5
Q ss_pred CccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR 188 (428)
Q Consensus 109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~ 188 (428)
.+.++.+|+||+ .|.|++|+.|+|+|+.... ++++|+||++.|.|. |++|+
T Consensus 6 ~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~---------------------------~~~~C~~f~~~G~C~-~~~C~ 56 (77)
T 2d9n_A 6 SGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------------------------KMPECYFYSKFGECS-NKECP 56 (77)
T ss_dssp SCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTT---------------------------TSCBCHHHHHTCCCC-CSSCS
T ss_pred CCCcceeCHhHc-cCcCCCCCCCCCccccccC---------------------------cCCCCcccCCCCccC-CCCee
Confidence 356889999999 6999999999999987642 246899999966999 89999
Q ss_pred CCCCCCC
Q 014215 189 FSHSTEK 195 (428)
Q Consensus 189 f~H~~~~ 195 (428)
|+|+.+.
T Consensus 57 f~H~~~~ 63 (77)
T 2d9n_A 57 FLHIDPE 63 (77)
T ss_dssp SBCCCTT
T ss_pred ccCCCcc
Confidence 9999753
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.34 E-value=5.4e-13 Score=105.43 Aligned_cols=67 Identities=27% Similarity=0.517 Sum_probs=29.2
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCC
Q 014215 64 RPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIE 138 (428)
Q Consensus 64 r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~ 138 (428)
+..+.+|++|+++|.|++|++|+|+|+..+.+... .....++.+|++|.+.|.|++|++|+|+|...
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 45788999998899999999999999998765321 11245678999888899999999999999865
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.23 E-value=3.8e-12 Score=100.51 Aligned_cols=68 Identities=22% Similarity=0.543 Sum_probs=29.3
Q ss_pred CccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR 188 (428)
Q Consensus 109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~ 188 (428)
..+++.+|++|++.|.|++|++|+|+|+....+... ..++.++.+|++|...|.|.+|++|+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~------------------~~~~~k~~~C~~f~~~G~C~~G~~C~ 69 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN------------------RHPKYKTELCHKFKLQGRCPYGSRCH 69 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc------------------ccccccCCcccchhhCcCCCCcCcCC
Confidence 357899999998899999999999999987643210 01123467999888778999999999
Q ss_pred CCCCCC
Q 014215 189 FSHSTE 194 (428)
Q Consensus 189 f~H~~~ 194 (428)
|+|...
T Consensus 70 f~H~~~ 75 (77)
T 1m9o_A 70 FIHNPT 75 (77)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999853
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.22 E-value=2.1e-12 Score=107.03 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=65.3
Q ss_pred cCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCC
Q 014215 168 VQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKE 247 (428)
Q Consensus 168 ~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~ 247 (428)
++.+|+||.+| .|.+|++|+|+|.. .+|++|+..|.|++|..|+|.|...
T Consensus 12 k~~lC~~f~~G-~C~~G~~C~f~H~~-----------------------------~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 12 KRELCKFYITG-FCARAENCPYMHGD-----------------------------FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCSBCTTTTTT-CCSCSTTCSSBSSS-----------------------------SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCccCcccccC-cCCCCCCCCCCCCC-----------------------------CcCcCcccCCcCCCCCCCcccCCCC
Confidence 46799999765 99999999999982 4799997679999999999999975
Q ss_pred CcchhhhcccCCCcccccCCCCCCCCCCCCcccccccc
Q 014215 248 KPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGS 285 (428)
Q Consensus 248 ~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~ 285 (428)
..... . .-...++..+++.+.+|++|.+++++|.
T Consensus 62 ~~~~~--~--~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 62 TEETR--E--LLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp CHHHH--H--HHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred cccch--h--HHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 43210 0 0011245567888899999999999885
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.17 E-value=6.4e-12 Score=98.34 Aligned_cols=57 Identities=32% Similarity=0.621 Sum_probs=48.7
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215 64 RPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 64 r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
.....+|+||++ |.|++|++|+|+|+.... ++++|+||++.|.|.+ +.|+|.|....
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 345788999996 999999999999987542 3678999995599999 99999998765
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.16 E-value=2.5e-11 Score=100.54 Aligned_cols=58 Identities=33% Similarity=0.732 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCC
Q 014215 59 HEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIE 138 (428)
Q Consensus 59 ~~~p~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~ 138 (428)
..+..+..+.+|+||+ .|.|++|++|+|+|+ ..+|++|++.|.|++|+.|+|+|+..
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 3455566788999997 799999999999998 13699997799999999999999965
Q ss_pred c
Q 014215 139 K 139 (428)
Q Consensus 139 ~ 139 (428)
.
T Consensus 62 ~ 62 (98)
T 2cqe_A 62 T 62 (98)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.16 E-value=6.8e-12 Score=98.19 Aligned_cols=57 Identities=28% Similarity=0.701 Sum_probs=48.7
Q ss_pred ccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215 110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF 189 (428)
Q Consensus 110 ~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f 189 (428)
+.+.++|+||+ .|.|++|+.|+|+|+.... ++++|+||+++|.|.+ ++|+|
T Consensus 13 ~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~---------------------------~~~~C~~f~~~G~C~~-~~C~y 63 (72)
T 2rhk_C 13 GEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------------------------KMSECYFYSKFGECSN-KECPF 63 (72)
T ss_dssp CCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT---------------------------SCCBCHHHHHHSCCSB-TTCCS
T ss_pred CCcCeeCHHHh-cCCCCCCCCCCCccccccc---------------------------cCCcccccCCCCCCCC-CCeec
Confidence 46788999999 5999999999999987542 2468999999559999 99999
Q ss_pred CCCCCC
Q 014215 190 SHSTEK 195 (428)
Q Consensus 190 ~H~~~~ 195 (428)
+|+.+.
T Consensus 64 ~H~~p~ 69 (72)
T 2rhk_C 64 LHIDPE 69 (72)
T ss_dssp BCCCCC
T ss_pred cCCCcc
Confidence 999764
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.90 E-value=4.9e-10 Score=87.12 Aligned_cols=60 Identities=27% Similarity=0.564 Sum_probs=47.8
Q ss_pred CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215 67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
.++|++|+ .|.|++|+ .|+|+|+....... ....++.+|++|+ .|.|.+| .|+|+|....
T Consensus 6 ~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 6 LEVCREYQ-RGNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp EEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHH
T ss_pred chhCHHHh-cCCCCCCCCCCCCccCccccccc----------ccCCcceeccccC-cCCCCCC-CcCeeCCHHH
Confidence 46899998 59999999 59999998754321 1234678999999 6999999 9999998653
No 10
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.88 E-value=6.5e-10 Score=86.38 Aligned_cols=61 Identities=26% Similarity=0.644 Sum_probs=47.4
Q ss_pred cccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215 111 LGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF 189 (428)
Q Consensus 111 ~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f 189 (428)
.+..+|++|+ .|.|.+|+ .|+|+|+....... .....+++|++|++| .|.+| +|+|
T Consensus 4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~--------------------~~~~~~~vC~~flkG-~C~r~-~C~y 60 (70)
T 3d2q_A 4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTMID--------------------TNDNTVTVCMDYIKG-RCSRE-KCKY 60 (70)
T ss_dssp CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB--------------------TTTTEEEBCHHHHTT-CCCCT-TCCS
T ss_pred ccchhCHHHh-cCCCCCCCCCCCCccCccccccc--------------------ccCCcceeccccCcC-CCCCC-CcCe
Confidence 3567999997 89999999 59999987642110 001235799999997 99999 9999
Q ss_pred CCCCC
Q 014215 190 SHSTE 194 (428)
Q Consensus 190 ~H~~~ 194 (428)
.|+..
T Consensus 61 ~H~~~ 65 (70)
T 3d2q_A 61 FHPPA 65 (70)
T ss_dssp BCCCH
T ss_pred eCCHH
Confidence 99964
No 11
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=86.61 Aligned_cols=61 Identities=23% Similarity=0.556 Sum_probs=49.3
Q ss_pred CccccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCC
Q 014215 109 QHLGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEAC 187 (428)
Q Consensus 109 ~~~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C 187 (428)
.|.+..+|++|+ .|.|.+|+ .|+|+|+....... ....++|.+|++| .|.++ .|
T Consensus 5 ~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~~----------------------~~~~~vC~dflkG-~C~r~-~C 59 (83)
T 3d2n_A 5 KWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQVE----------------------NGRVIACFDSLKG-RCSRE-NC 59 (83)
T ss_dssp GGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCEE----------------------TTEEECCHHHHTT-CCCCS-SC
T ss_pred ccccchhcHHHh-cCCCCCCCCCCCCcCCCcccccc----------------------CCceeehhHhhhc-cccCC-Cc
Confidence 467788999999 59999997 99999998642111 1135799999998 99998 99
Q ss_pred CCCCCCC
Q 014215 188 RFSHSTE 194 (428)
Q Consensus 188 ~f~H~~~ 194 (428)
+|.|+..
T Consensus 60 ~y~H~~~ 66 (83)
T 3d2n_A 60 KYLHPPP 66 (83)
T ss_dssp SSCCCCH
T ss_pred ceeCChH
Confidence 9999965
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1e-09 Score=90.84 Aligned_cols=61 Identities=25% Similarity=0.610 Sum_probs=48.1
Q ss_pred cccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215 111 LGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF 189 (428)
Q Consensus 111 ~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f 189 (428)
.+..+|++|+ .|.|++|+ .|+|+|+....... ......++|++|++| .|.+| +|+|
T Consensus 18 ~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~~--------------------~~~~~~~vC~~flkG-~C~r~-~C~y 74 (98)
T 2e5s_A 18 DKLEVCREFQ-RGNCARGETDCRFAHPADSTMID--------------------TSDNTVTVCMDYIKG-RCMRE-KCKY 74 (98)
T ss_dssp SEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSCC--------------------TTTCEEEBCHHHHHT-CCCCT-TCCS
T ss_pred hhhhhhHHHh-cCcCCCCCCCCCCcCCchhcccc--------------------ccCCccccchhhccC-CCCCC-CcCc
Confidence 3567999999 69999999 79999998653110 001235799999997 99999 9999
Q ss_pred CCCCC
Q 014215 190 SHSTE 194 (428)
Q Consensus 190 ~H~~~ 194 (428)
.|+..
T Consensus 75 ~H~~~ 79 (98)
T 2e5s_A 75 FHPPA 79 (98)
T ss_dssp BCCCH
T ss_pred cCChH
Confidence 99975
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.8e-09 Score=88.18 Aligned_cols=60 Identities=27% Similarity=0.558 Sum_probs=49.2
Q ss_pred CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215 67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
.++|++|++ |.|++|+ .|+|+|+....... +...++++|++|+ .|.|.++ .|+|.|....
T Consensus 20 ~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 20 LEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp EEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHH
T ss_pred hhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhc-cCCCCCC-CcCccCChHH
Confidence 468999997 9999999 79999998765321 1234678999999 7999999 9999998764
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.71 E-value=5.8e-09 Score=83.66 Aligned_cols=59 Identities=27% Similarity=0.475 Sum_probs=48.0
Q ss_pred CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcc
Q 014215 67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKS 140 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~ 140 (428)
.++|++|++ |.|++|+ .|+|+|+...... +..+..+|.+|+ .|.|.++ .|+|.|.....
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~------------~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV------------ENGRVIACFDSL-KGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE------------ETTEEECCHHHH-TTCCCCS-SCSSCCCCHHH
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCccccc------------cCCceeehhHhh-hccccCC-CcceeCChHHH
Confidence 468999997 9999997 9999999865321 123468999999 7999998 99999987653
No 15
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.65 E-value=1.4e-08 Score=82.44 Aligned_cols=60 Identities=23% Similarity=0.573 Sum_probs=48.1
Q ss_pred ccccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215 110 HLGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR 188 (428)
Q Consensus 110 ~~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~ 188 (428)
+.+..+|++|+ .|.|.+|+ .|+|+|+....... ....++|.+|++| .|.++ .|+
T Consensus 14 ~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v~----------------------~~~~~vC~dflkG-~C~r~-~Ck 68 (89)
T 2rpp_A 14 WLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQVE----------------------NGRVIACFDSLKG-RCSRE-NCK 68 (89)
T ss_dssp SSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCCB----------------------TTBEEBCHHHHHT-CCCCT-TCC
T ss_pred cchhhhchHHh-cCCCCCCCCCCCCcCCCcccccc----------------------CCceeeehhhhhC-cCCCC-Ccc
Confidence 34577999999 69999998 99999998752110 1135799999998 99997 999
Q ss_pred CCCCCC
Q 014215 189 FSHSTE 194 (428)
Q Consensus 189 f~H~~~ 194 (428)
|.|+..
T Consensus 69 y~H~~~ 74 (89)
T 2rpp_A 69 YLHPPT 74 (89)
T ss_dssp SBCCCH
T ss_pred eecCHH
Confidence 999965
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.54 E-value=2.8e-08 Score=80.58 Aligned_cols=58 Identities=28% Similarity=0.512 Sum_probs=47.9
Q ss_pred CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215 67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
.++|+.|++ |.|++|+ .|+|+|+...... +.-+..+|.+|+ .|.|.++ .|+|.|....
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v------------~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV------------ENGRVIACFDSL-KGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC------------BTTBEEBCHHHH-HTCCCCT-TCCSBCCCHH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccc------------cCCceeeehhhh-hCcCCCC-CcceecCHHH
Confidence 468999997 9999998 9999999875321 112478999999 8999997 9999998764
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.41 E-value=1.7e-07 Score=87.60 Aligned_cols=96 Identities=23% Similarity=0.502 Sum_probs=66.7
Q ss_pred cccccccccCCC----CCCCCCcccCCCcccccc----cccccCCC---CccccccccCccccccCccCcccccC----C
Q 014215 115 QCKFYQSTGGCK----HGEACRFKHSIEKSEVSK----SVLNAFNL---PIKLESKGEGLMEKTVQIQCKFYQRT----E 179 (428)
Q Consensus 115 ~C~~f~~~G~C~----~G~~C~f~H~~~~~~~s~----~~~~~~~~---p~~~~~~~~~~~e~~~~~~C~~f~~~----g 179 (428)
+||+|+ .|.|+ .+..|+|+|+........ ..++.++. -.-.-.+++.+.+ .+|.+| +| |
T Consensus 91 LCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP----eiC~~Y-kG~g~~g 164 (229)
T 3u9g_A 91 LCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP----EICKSY-KGEGRKQ 164 (229)
T ss_dssp CCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC----CBCTTC-CCSSSCC
T ss_pred echhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc----hHHHHh-CCCCCCC
Confidence 799999 79993 457899999998753211 11111110 0001123333222 389999 86 6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcc
Q 014215 180 GCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQ 250 (428)
Q Consensus 180 ~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 250 (428)
.|.+++.|...|+ |++|.+ |.|++ ..|+-+|....+.
T Consensus 165 ~C~~~~~C~kLHI--------------------------------C~~Fl~-G~C~f-~~CkRsH~~~~~~ 201 (229)
T 3u9g_A 165 TCGQPQPCERLHI--------------------------------CEHFTR-GNCSY-LNCLRSHNLMDRK 201 (229)
T ss_dssp SCSSSSCCCSBCS--------------------------------CHHHHT-TCCCC-SSCSSCCCTTSHH
T ss_pred cCCCCCCCcceec--------------------------------cchhhc-CCcCC-CCccCccCccCch
Confidence 8999999999987 999996 99999 7999999987654
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.08 E-value=2.9e-06 Score=79.20 Aligned_cols=95 Identities=21% Similarity=0.390 Sum_probs=61.4
Q ss_pred cCcccccCCCC----CCCCCCCCCCCCCCCCCCCC--CCCCCCCcccC-CCC-cccc--cCccccccccC----CCCCCC
Q 014215 171 QCKFYQRTEGC----KHGEACRFSHSTEKSENPLP--FSGANGMKESK-GGS-LVEM--TGLIGCKYHLS----AGGCKY 236 (428)
Q Consensus 171 ~C~~f~~~g~C----~~G~~C~f~H~~~~~~~p~~--~~~~~~~~~s~-~~~-~per--~~~~~C~~f~~----~G~C~~ 236 (428)
+|++|+-| .| ..+..|+|+|...+..+... ..+-.+....+ ... +... --..+|.+| + .|.|++
T Consensus 91 LCK~~l~G-~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~ 168 (229)
T 3u9g_A 91 LCKLNLLG-RCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ 168 (229)
T ss_dssp CCHHHHTT-CCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred echhhhcC-cCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence 89999997 99 34688999999764322000 00000000000 000 0000 012689999 6 369999
Q ss_pred CCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCC
Q 014215 237 GNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPV 300 (428)
Q Consensus 237 G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~ 300 (428)
++.|...| +|.+|++ |.|+| ..|+..|....
T Consensus 169 ~~~C~kLH-------------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 169 PQPCERLH-------------------------------ICEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SSCCCSBC-------------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred CCCCccee-------------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence 99999888 6999988 99999 89999998643
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.94 E-value=4e-06 Score=66.43 Aligned_cols=65 Identities=32% Similarity=0.689 Sum_probs=52.4
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccccc
Q 014215 67 AEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV 146 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~ 146 (428)
.+.|+||. .|++ ..|.|.|+.. ...|+|++ .|.+ ..|.|.|+..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------~~~Cr~g~---~C~~-~~C~f~HP~~-------- 52 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS--------------------HIMCREGA---NCTR-IDCLFGHPIN-------- 52 (80)
Confidence 46799997 8999 8999999753 23699886 8998 7899999732
Q ss_pred cccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCC
Q 014215 147 LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTE 194 (428)
Q Consensus 147 ~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~ 194 (428)
..|+|+. .|.. .+|.|.|+..
T Consensus 53 -----------------------~~Crf~~---~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 53 -----------------------EDCRFGV---NCKN-IYCLFRHPPG 73 (80)
Confidence 2688876 6887 7999999864
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.49 E-value=2.6e-05 Score=61.78 Aligned_cols=68 Identities=29% Similarity=0.670 Sum_probs=53.7
Q ss_pred CccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCC
Q 014215 169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEK 248 (428)
Q Consensus 169 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 248 (428)
...|+|+. .|.. .+|.|.|+.. ...|+++ ..|++ .+|.|.|+..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~---------------------------~~~Cr~g---~~C~~-~~C~f~HP~~- 52 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS---------------------------HIMCREG---ANCTR-IDCLFGHPIN- 52 (80)
Confidence 46899988 7998 9999999853 1479997 47998 7799999731
Q ss_pred cchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCcc
Q 014215 249 PQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVAD 302 (428)
Q Consensus 249 ~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~ 302 (428)
..|+|+ -.|.. ..|.|.|+....+
T Consensus 53 --------------------------~~Crf~---~~C~n-~~C~F~Hp~g~~~ 76 (80)
T 2lhn_A 53 --------------------------EDCRFG---VNCKN-IYCLFRHPPGRVL 76 (80)
Confidence 369998 36996 8999999976554
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.00057 Score=52.34 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.1
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCcc
Q 014215 67 AEDCPFYLRTGYCKFGFCCKFNHPVRGDF 95 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~~~ 95 (428)
..+|..| .+|.|+||++|.|+|+..+++
T Consensus 20 ~~LC~~~-~~G~C~~G~~C~FAHG~~ELr 47 (69)
T 2d9m_A 20 FSICDRY-MNGTCPEGNSCKFAHGNAELH 47 (69)
T ss_dssp CSBCHHH-HHSCCSSCSSCSSBSSHHHHH
T ss_pred cccCccc-CcCCCCCCCccCCcCCHHHHh
Confidence 4899999 489999999999999988775
No 22
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.0011 Score=50.78 Aligned_cols=25 Identities=36% Similarity=0.813 Sum_probs=22.2
Q ss_pred CCCccccccccCCCCCCCccCCCCCC
Q 014215 275 IECPFYMRNGSCAYGVDCRFNHPDPV 300 (428)
Q Consensus 275 ~~C~~y~~~G~C~~G~~C~F~H~~~~ 300 (428)
.+|..| .+|.|+||+.|.|+|+...
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSSHHH
T ss_pred ccCccc-CcCCCCCCCccCCcCCHHH
Confidence 589999 5699999999999999753
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.99 E-value=0.0017 Score=46.23 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=25.5
Q ss_pred ccccccccccccCCCCCCCCCcccCCCc
Q 014215 112 GQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 112 ~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
...+|+.|...|.|++|.+|.++|+..-
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCC
Confidence 5679999999999999999999999864
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=93.16 E-value=0.038 Score=39.29 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCCCCccccccccCCCCCCCccCCCCCC
Q 014215 273 HEIECPFYMRNGSCAYGVDCRFNHPDPV 300 (428)
Q Consensus 273 ~e~~C~~y~~~G~C~~G~~C~F~H~~~~ 300 (428)
...+|.-|...|+|++|..|.+.|....
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCC
Confidence 3568999999999999999999998654
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.30 E-value=0.049 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.804 Sum_probs=23.5
Q ss_pred CCCccccccccCCCCCCCccCCCCCCc
Q 014215 275 IECPFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 275 ~~C~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
.+|.||.+ |.|++|+.|.|.|..+..
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 58999977 999999999999988764
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.33 E-value=0.12 Score=48.81 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=23.8
Q ss_pred ccccccccccccCCCCCCCCCcccCCCc
Q 014215 112 GQIQCKFYQSTGGCKHGEACRFKHSIEK 139 (428)
Q Consensus 112 ~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 139 (428)
+..+|-||. .|.|++|+.|.|.|....
T Consensus 69 ~~~~C~ffa-kG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFA-KGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred CCeEcCccc-cCCCCCCCCCCccCCCCC
Confidence 456899998 599999999999998765
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=74.45 E-value=0.63 Score=43.44 Aligned_cols=25 Identities=40% Similarity=1.105 Sum_probs=0.0
Q ss_pred CCCCccccccccCCCCCCCccCCCCCCc
Q 014215 274 EIECPFYMRNGSCAYGVDCRFNHPDPVA 301 (428)
Q Consensus 274 e~~C~~y~~~G~C~~G~~C~F~H~~~~~ 301 (428)
.++|+|. -.|-||..|+|.||+...
T Consensus 192 ~~~~~~~---~~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 192 KQPCPYG---RKCTYGIKCRFFHPERPS 216 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCC---cccccCCcceecCCccCC
Confidence 5689998 359999999999998754
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=55.05 E-value=2.5 Score=39.34 Aligned_cols=24 Identities=38% Similarity=1.000 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCC
Q 014215 67 AEDCPFYLRTGYCKFGFCCKFNHPVRG 93 (428)
Q Consensus 67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~ 93 (428)
.+.|.|- .+|+||.+|+|.|+...
T Consensus 192 ~~~~~~~---~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYG---RKCTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCC---cccccCCcceecCCccC
Confidence 5679984 59999999999998654
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=24.54 E-value=48 Score=26.26 Aligned_cols=17 Identities=41% Similarity=0.944 Sum_probs=11.3
Q ss_pred CCCCCCCCC---------CCCCCCCc
Q 014215 78 YCKFGFCCK---------FNHPVRGD 94 (428)
Q Consensus 78 ~C~~G~~C~---------F~H~~~~~ 94 (428)
.|+||.+|- |+|+.+..
T Consensus 16 ~C~yG~~CYRkNp~H~~~fsHP~d~d 41 (89)
T 2kqb_A 16 SCMYGANCYRKNPVHFQHFSHPGDSD 41 (89)
T ss_dssp ECTTTTCCCCCCTTHHHHEECTTSTT
T ss_pred CCCCCcccccCChHHHhhccCCCccc
Confidence 566666663 88887653
Done!