Query 014216
Match_columns 428
No_of_seqs 224 out of 3433
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.3E-36 2.7E-41 283.0 29.1 335 27-402 22-363 (493)
2 PTZ00102 disulphide isomerase; 100.0 2.1E-32 4.5E-37 269.4 36.6 307 29-393 31-345 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 2.7E-32 5.8E-37 268.1 33.3 322 31-393 2-334 (462)
4 KOG4277 Uncharacterized conser 100.0 1.5E-28 3.3E-33 209.0 21.8 310 29-385 27-350 (468)
5 KOG0191 Thioredoxin/protein di 100.0 3.4E-28 7.3E-33 230.8 24.2 236 28-279 27-265 (383)
6 PF01216 Calsequestrin: Calseq 100.0 1.8E-26 4E-31 201.1 32.0 323 25-389 29-371 (383)
7 KOG0912 Thiol-disulfide isomer 100.0 1.9E-26 4.1E-31 196.7 24.5 310 36-390 2-323 (375)
8 TIGR02187 GlrX_arch Glutaredox 99.9 2.6E-25 5.5E-30 193.8 19.9 191 47-264 18-214 (215)
9 KOG0190 Protein disulfide isom 99.9 3.2E-21 7E-26 180.3 19.7 213 158-389 23-238 (493)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.9 5.5E-22 1.2E-26 152.5 11.4 107 25-131 4-113 (113)
11 PTZ00102 disulphide isomerase; 99.9 7.7E-21 1.7E-25 187.3 22.3 224 32-267 234-466 (477)
12 KOG0910 Thioredoxin-like prote 99.9 1.9E-21 4E-26 151.5 8.9 105 31-135 44-148 (150)
13 PTZ00443 Thioredoxin domain-co 99.9 1.1E-20 2.3E-25 162.6 14.4 108 29-136 29-140 (224)
14 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 8.8E-21 1.9E-25 145.1 11.7 99 31-130 2-100 (101)
15 TIGR01130 ER_PDI_fam protein d 99.8 3.5E-19 7.6E-24 175.1 24.6 223 32-266 219-454 (462)
16 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.6E-20 3.4E-25 144.6 10.9 101 31-131 2-104 (104)
17 PF00085 Thioredoxin: Thioredo 99.8 3.3E-20 7.2E-25 142.8 11.8 103 32-134 1-103 (103)
18 cd02983 P5_C P5 family, C-term 99.8 1.1E-19 2.3E-24 143.8 13.8 129 273-401 2-130 (130)
19 cd03065 PDI_b_Calsequestrin_N 99.8 5.6E-20 1.2E-24 142.1 10.3 108 27-135 6-119 (120)
20 cd02996 PDI_a_ERp44 PDIa famil 99.8 9.3E-20 2E-24 141.2 10.9 100 31-131 2-108 (108)
21 PF13848 Thioredoxin_6: Thiore 99.8 5E-18 1.1E-22 145.3 20.4 177 194-384 6-184 (184)
22 cd03002 PDI_a_MPD1_like PDI fa 99.8 3.7E-19 8E-24 138.3 11.4 101 31-131 1-108 (109)
23 COG3118 Thioredoxin domain-con 99.8 2.3E-19 5.1E-24 155.1 10.9 109 29-137 22-132 (304)
24 PRK09381 trxA thioredoxin; Pro 99.8 6.4E-19 1.4E-23 136.8 11.1 107 29-135 2-108 (109)
25 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.3E-18 2.9E-23 133.7 12.3 103 158-261 7-112 (113)
26 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.7E-18 3.6E-23 133.3 11.6 103 160-262 1-104 (104)
27 cd02963 TRX_DnaJ TRX domain, D 99.8 6.8E-19 1.5E-23 136.5 9.2 101 33-133 7-110 (111)
28 cd03001 PDI_a_P5 PDIa family, 99.8 1.8E-18 3.9E-23 133.0 11.3 100 32-131 2-102 (103)
29 cd02956 ybbN ybbN protein fami 99.8 1.9E-18 4.1E-23 130.9 10.5 93 39-131 2-95 (96)
30 cd02994 PDI_a_TMX PDIa family, 99.8 2.1E-18 4.5E-23 132.0 10.5 98 31-132 2-100 (101)
31 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.6E-18 5.6E-23 131.9 9.8 98 32-131 2-102 (102)
32 cd02954 DIM1 Dim1 family; Dim1 99.8 2.5E-18 5.5E-23 130.6 9.1 92 38-129 3-95 (114)
33 cd02962 TMX2 TMX2 family; comp 99.8 3.9E-18 8.4E-23 137.9 10.5 97 24-120 22-126 (152)
34 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.1E-17 2.4E-22 127.8 12.1 101 160-262 1-101 (101)
35 PHA02278 thioredoxin-like prot 99.8 3.4E-18 7.5E-23 129.2 9.0 92 38-130 5-100 (103)
36 PF00085 Thioredoxin: Thioredo 99.8 1.6E-17 3.5E-22 127.7 12.3 103 162-265 1-103 (103)
37 cd03007 PDI_a_ERp29_N PDIa fam 99.7 7.9E-18 1.7E-22 128.3 9.9 99 31-134 2-115 (116)
38 PRK10996 thioredoxin 2; Provis 99.7 1E-17 2.3E-22 135.1 11.0 104 30-134 35-138 (139)
39 cd02997 PDI_a_PDIR PDIa family 99.7 9.3E-18 2E-22 129.3 10.2 99 32-131 2-104 (104)
40 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.1E-17 2.5E-22 128.8 10.6 100 31-131 1-104 (104)
41 TIGR01126 pdi_dom protein disu 99.7 1E-17 2.2E-22 128.5 10.0 99 35-134 1-101 (102)
42 cd02999 PDI_a_ERp44_like PDIa 99.7 7.5E-18 1.6E-22 127.7 8.8 84 46-131 16-100 (100)
43 KOG0912 Thiol-disulfide isomer 99.7 1E-16 2.3E-21 137.5 16.4 199 166-385 2-207 (375)
44 cd02993 PDI_a_APS_reductase PD 99.7 1.8E-17 3.9E-22 128.3 10.6 101 31-131 2-109 (109)
45 cd02996 PDI_a_ERp44 PDIa famil 99.7 3.7E-17 8.1E-22 126.5 12.0 101 161-262 2-108 (108)
46 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.7E-17 5.8E-22 127.0 10.6 100 32-131 2-105 (105)
47 KOG0191 Thioredoxin/protein di 99.7 4.3E-16 9.2E-21 148.1 20.6 221 161-388 30-254 (383)
48 cd03002 PDI_a_MPD1_like PDI fa 99.7 7.6E-17 1.6E-21 125.3 12.0 101 162-262 2-108 (109)
49 TIGR01068 thioredoxin thioredo 99.7 4.4E-17 9.5E-22 124.8 10.3 99 36-134 2-100 (101)
50 cd03001 PDI_a_P5 PDIa family, 99.7 1.2E-16 2.6E-21 122.8 12.2 101 162-262 2-102 (103)
51 PTZ00062 glutaredoxin; Provisi 99.7 2.1E-16 4.5E-21 133.7 14.6 161 37-238 6-174 (204)
52 cd02985 TRX_CDSP32 TRX family, 99.7 5.5E-17 1.2E-21 124.0 10.0 93 37-131 3-99 (103)
53 KOG0910 Thioredoxin-like prote 99.7 4.7E-17 1E-21 127.0 9.5 106 160-266 43-148 (150)
54 cd02965 HyaE HyaE family; HyaE 99.7 5.3E-17 1.2E-21 122.3 9.1 98 30-128 10-109 (111)
55 cd02948 TRX_NDPK TRX domain, T 99.7 9.6E-17 2.1E-21 122.5 9.9 94 36-132 6-100 (102)
56 cd02961 PDI_a_family Protein D 99.7 8.9E-17 1.9E-21 122.9 9.6 97 34-131 2-101 (101)
57 TIGR02187 GlrX_arch Glutaredox 99.7 2.1E-15 4.5E-20 131.6 19.2 191 178-384 19-214 (215)
58 KOG1731 FAD-dependent sulfhydr 99.7 3E-16 6.4E-21 146.5 14.5 232 21-269 30-272 (606)
59 KOG4277 Uncharacterized conser 99.7 3.2E-16 7E-21 134.1 12.8 185 177-385 42-230 (468)
60 cd03065 PDI_b_Calsequestrin_N 99.7 4E-16 8.7E-21 120.7 11.0 106 158-265 7-118 (120)
61 PLN00410 U5 snRNP protein, DIM 99.7 4.5E-16 9.7E-21 123.1 11.1 103 37-139 11-124 (142)
62 cd03000 PDI_a_TMX3 PDIa family 99.7 4.1E-16 8.8E-21 119.8 10.6 93 38-133 7-102 (104)
63 cd02957 Phd_like Phosducin (Ph 99.7 1.2E-16 2.6E-21 124.5 7.6 93 30-124 4-98 (113)
64 cd02993 PDI_a_APS_reductase PD 99.7 7.3E-16 1.6E-20 119.3 11.4 102 161-262 2-109 (109)
65 cd02953 DsbDgamma DsbD gamma f 99.7 4.1E-16 8.8E-21 119.8 10.0 93 38-131 2-103 (104)
66 KOG0907 Thioredoxin [Posttrans 99.7 3.7E-16 8.1E-21 118.0 8.4 84 46-131 19-102 (106)
67 cd02994 PDI_a_TMX PDIa family, 99.7 1.1E-15 2.5E-20 116.7 11.2 98 161-263 2-100 (101)
68 PRK09381 trxA thioredoxin; Pro 99.7 1.9E-15 4.2E-20 117.2 12.3 106 160-266 3-108 (109)
69 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.5E-15 3.3E-20 116.9 11.5 101 161-262 1-104 (104)
70 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.3E-15 2.7E-20 116.3 10.7 100 161-265 2-115 (116)
71 cd02998 PDI_a_ERp38 PDIa famil 99.7 1.5E-15 3.3E-20 117.1 11.4 101 162-262 2-105 (105)
72 cd02949 TRX_NTR TRX domain, no 99.7 8.2E-16 1.8E-20 116.4 9.7 89 43-131 8-96 (97)
73 cd02992 PDI_a_QSOX PDIa family 99.6 1.6E-15 3.5E-20 117.9 11.4 84 31-114 2-90 (114)
74 cd02989 Phd_like_TxnDC9 Phosdu 99.6 8.4E-16 1.8E-20 119.1 8.9 91 30-122 4-95 (113)
75 PTZ00443 Thioredoxin domain-co 99.6 2.9E-15 6.4E-20 129.1 12.8 111 159-270 29-143 (224)
76 cd03005 PDI_a_ERp46 PDIa famil 99.6 1.8E-15 3.8E-20 116.0 10.2 98 162-262 2-102 (102)
77 cd02956 ybbN ybbN protein fami 99.6 3E-15 6.5E-20 113.3 11.3 93 169-262 2-95 (96)
78 cd02950 TxlA TRX-like protein 99.6 2E-15 4.4E-20 122.0 10.9 97 38-135 11-110 (142)
79 cd02963 TRX_DnaJ TRX domain, D 99.6 2.1E-15 4.6E-20 116.9 9.5 100 164-264 8-110 (111)
80 TIGR01126 pdi_dom protein disu 99.6 3.7E-15 8.1E-20 114.2 10.8 99 165-265 1-101 (102)
81 PTZ00051 thioredoxin; Provisio 99.6 2.6E-15 5.7E-20 114.1 9.6 93 32-127 2-95 (98)
82 cd02984 TRX_PICOT TRX domain, 99.6 3.4E-15 7.4E-20 113.2 9.8 92 38-130 3-95 (97)
83 cd02999 PDI_a_ERp44_like PDIa 99.6 5.1E-15 1.1E-19 112.2 10.1 84 176-262 16-100 (100)
84 COG3118 Thioredoxin domain-con 99.6 9.4E-15 2E-19 126.8 12.0 109 158-267 21-131 (304)
85 PLN02309 5'-adenylylsulfate re 99.6 9.4E-15 2E-19 138.4 12.3 107 28-134 343-456 (457)
86 TIGR00424 APS_reduc 5'-adenyly 99.6 9.1E-15 2E-19 138.5 12.2 106 28-133 349-461 (463)
87 cd02986 DLP Dim1 family, Dim1- 99.6 7.3E-15 1.6E-19 110.5 9.0 79 38-116 3-82 (114)
88 cd02954 DIM1 Dim1 family; Dim1 99.6 6.3E-15 1.4E-19 112.1 8.3 86 168-254 3-89 (114)
89 cd02997 PDI_a_PDIR PDIa family 99.6 1.8E-14 3.9E-19 110.8 10.9 99 162-262 2-104 (104)
90 PRK10996 thioredoxin 2; Provis 99.6 3.2E-14 7E-19 114.7 12.3 105 159-265 34-138 (139)
91 cd02961 PDI_a_family Protein D 99.6 1.9E-14 4.1E-19 109.9 10.5 98 164-262 2-101 (101)
92 PF13848 Thioredoxin_6: Thiore 99.6 3.6E-13 7.7E-18 115.2 19.4 172 65-264 7-184 (184)
93 TIGR01068 thioredoxin thioredo 99.6 2.9E-14 6.2E-19 109.0 11.0 99 166-265 2-100 (101)
94 PHA02278 thioredoxin-like prot 99.6 2E-14 4.3E-19 108.7 9.7 92 168-261 5-100 (103)
95 cd02975 PfPDO_like_N Pyrococcu 99.6 2.2E-14 4.8E-19 111.2 10.1 89 46-135 20-110 (113)
96 cd02987 Phd_like_Phd Phosducin 99.6 2E-14 4.3E-19 120.0 10.0 91 28-120 60-153 (175)
97 cd02947 TRX_family TRX family; 99.5 2.8E-14 6.1E-19 107.1 9.3 91 39-131 2-92 (93)
98 TIGR01295 PedC_BrcD bacterioci 99.5 2.7E-14 5.8E-19 112.0 9.2 100 30-132 6-121 (122)
99 cd02951 SoxW SoxW family; SoxW 99.5 5.3E-14 1.2E-18 111.9 10.2 95 43-137 8-121 (125)
100 cd02985 TRX_CDSP32 TRX family, 99.5 8.8E-14 1.9E-18 106.3 10.8 94 167-263 3-100 (103)
101 cd02953 DsbDgamma DsbD gamma f 99.5 2E-13 4.3E-18 104.8 11.1 93 169-262 3-103 (104)
102 cd02965 HyaE HyaE family; HyaE 99.5 1.3E-13 2.8E-18 104.0 9.8 98 160-259 10-109 (111)
103 cd03000 PDI_a_TMX3 PDIa family 99.5 2.1E-13 4.6E-18 104.6 11.2 87 176-264 13-102 (104)
104 cd02962 TMX2 TMX2 family; comp 99.5 2.9E-13 6.2E-18 109.6 11.6 92 159-251 27-126 (152)
105 cd02948 TRX_NDPK TRX domain, T 99.5 3.1E-13 6.7E-18 103.1 11.2 95 166-264 6-101 (102)
106 TIGR00424 APS_reduc 5'-adenyly 99.5 2.5E-13 5.3E-18 128.9 12.9 107 158-264 349-461 (463)
107 PLN02309 5'-adenylylsulfate re 99.5 2.6E-13 5.5E-18 128.7 13.0 107 158-264 343-455 (457)
108 cd02992 PDI_a_QSOX PDIa family 99.5 5.5E-13 1.2E-17 103.7 12.3 98 161-258 2-108 (114)
109 cd02950 TxlA TRX-like protein 99.5 6.9E-13 1.5E-17 107.2 12.4 101 168-269 11-113 (142)
110 KOG1731 FAD-dependent sulfhydr 99.5 8E-13 1.7E-17 123.9 14.1 234 151-399 30-281 (606)
111 cd02982 PDI_b'_family Protein 99.5 3.8E-13 8.3E-18 103.2 9.6 87 48-134 12-102 (103)
112 cd02988 Phd_like_VIAF Phosduci 99.5 2.8E-13 6E-18 114.6 9.5 90 28-121 80-171 (192)
113 KOG0907 Thioredoxin [Posttrans 99.5 3.3E-13 7.2E-18 102.0 8.6 85 177-264 20-104 (106)
114 cd02957 Phd_like Phosducin (Ph 99.5 5.2E-13 1.1E-17 103.9 10.0 89 160-251 4-94 (113)
115 KOG0908 Thioredoxin-like prote 99.4 2.7E-13 5.9E-18 113.6 8.2 102 32-135 3-106 (288)
116 TIGR00411 redox_disulf_1 small 99.4 5.6E-13 1.2E-17 97.5 8.7 80 51-134 2-81 (82)
117 cd02989 Phd_like_TxnDC9 Phosdu 99.4 2.4E-12 5.1E-17 99.8 12.5 82 160-243 4-86 (113)
118 cd02949 TRX_NTR TRX domain, no 99.4 1.3E-12 2.8E-17 98.8 10.6 92 170-262 5-96 (97)
119 PLN00410 U5 snRNP protein, DIM 99.4 2.1E-12 4.6E-17 102.2 11.1 101 166-266 10-120 (142)
120 cd02986 DLP Dim1 family, Dim1- 99.4 1.3E-12 2.8E-17 98.4 8.8 82 168-249 3-85 (114)
121 PTZ00051 thioredoxin; Provisio 99.4 2.5E-12 5.3E-17 97.6 10.2 95 162-259 2-96 (98)
122 PRK14018 trifunctional thiored 99.4 2.6E-12 5.6E-17 123.5 12.5 101 33-133 41-171 (521)
123 PF01216 Calsequestrin: Calseq 99.4 1E-10 2.3E-15 103.2 21.0 207 157-386 31-247 (383)
124 cd02984 TRX_PICOT TRX domain, 99.4 4E-12 8.6E-17 96.3 10.3 93 168-262 3-96 (97)
125 PRK15412 thiol:disulfide inter 99.4 1E-11 2.2E-16 105.6 13.9 91 46-139 66-180 (185)
126 cd02987 Phd_like_Phd Phosducin 99.4 1.7E-11 3.7E-16 102.4 13.8 103 159-264 61-173 (175)
127 cd02952 TRP14_like Human TRX-r 99.4 2.6E-12 5.7E-17 99.1 7.9 77 38-114 10-102 (119)
128 cd02959 ERp19 Endoplasmic reti 99.4 3E-12 6.6E-17 99.7 8.3 92 43-134 14-112 (117)
129 TIGR03143 AhpF_homolog putativ 99.4 6.4E-11 1.4E-15 118.2 19.7 186 48-262 366-554 (555)
130 cd02975 PfPDO_like_N Pyrococcu 99.3 1.2E-11 2.7E-16 95.8 10.6 90 176-266 20-110 (113)
131 cd02982 PDI_b'_family Protein 99.3 1.3E-11 2.9E-16 94.6 10.1 88 178-265 12-102 (103)
132 TIGR02738 TrbB type-F conjugat 99.3 3.3E-11 7.2E-16 98.0 11.9 87 46-134 48-152 (153)
133 PRK03147 thiol-disulfide oxido 99.3 4.3E-11 9.2E-16 101.1 13.1 102 32-134 46-171 (173)
134 cd02951 SoxW SoxW family; SoxW 99.3 3.4E-11 7.4E-16 95.7 11.0 96 170-266 6-119 (125)
135 PF13098 Thioredoxin_2: Thiore 99.3 6.5E-12 1.4E-16 97.9 5.9 86 46-131 3-112 (112)
136 cd02947 TRX_family TRX family; 99.3 3.9E-11 8.4E-16 89.8 10.0 90 170-262 3-92 (93)
137 TIGR01295 PedC_BrcD bacterioci 99.3 4.1E-11 9E-16 93.9 10.0 99 160-262 6-120 (122)
138 cd02955 SSP411 TRX domain, SSP 99.2 5.5E-11 1.2E-15 92.9 9.2 98 36-134 4-118 (124)
139 TIGR00411 redox_disulf_1 small 99.2 9.3E-11 2E-15 85.7 9.5 80 181-265 2-81 (82)
140 cd03072 PDI_b'_ERp44 PDIb' fam 99.2 1.2E-10 2.5E-15 89.6 9.7 106 276-389 2-111 (111)
141 PHA02125 thioredoxin-like prot 99.2 5.1E-11 1.1E-15 85.0 7.1 61 52-121 2-62 (75)
142 TIGR00412 redox_disulf_2 small 99.2 6.1E-11 1.3E-15 84.7 7.5 73 52-131 2-75 (76)
143 cd02988 Phd_like_VIAF Phosduci 99.2 1.2E-10 2.6E-15 98.6 9.8 101 158-263 80-189 (192)
144 PTZ00062 glutaredoxin; Provisi 99.2 5.1E-10 1.1E-14 95.0 13.5 90 166-266 5-94 (204)
145 PRK00293 dipZ thiol:disulfide 99.1 5.4E-10 1.2E-14 111.0 14.0 96 38-134 461-569 (571)
146 COG2143 Thioredoxin-related pr 99.1 1.8E-09 3.9E-14 84.1 12.1 91 43-133 37-147 (182)
147 cd02952 TRP14_like Human TRX-r 99.1 5.9E-10 1.3E-14 86.1 8.7 75 168-242 10-100 (119)
148 KOG0908 Thioredoxin-like prote 99.1 6.2E-10 1.4E-14 93.7 9.5 101 166-269 8-109 (288)
149 TIGR00385 dsbE periplasmic pro 99.1 1.4E-09 3E-14 91.6 11.8 87 46-135 61-171 (173)
150 TIGR02740 TraF-like TraF-like 99.1 5.4E-10 1.2E-14 100.2 9.5 88 47-134 165-263 (271)
151 PF13905 Thioredoxin_8: Thiore 99.1 1E-09 2.2E-14 82.6 9.1 66 48-113 1-93 (95)
152 cd02973 TRX_GRX_like Thioredox 99.1 6.3E-10 1.4E-14 77.7 7.0 57 51-108 2-58 (67)
153 PRK13728 conjugal transfer pro 99.1 4E-09 8.8E-14 87.2 12.8 83 52-136 73-172 (181)
154 cd03008 TryX_like_RdCVF Trypar 99.0 1.1E-09 2.5E-14 87.9 8.9 68 47-114 24-124 (146)
155 cd03010 TlpA_like_DsbE TlpA-li 99.0 7.2E-10 1.6E-14 88.4 7.7 79 47-127 24-126 (127)
156 cd02958 UAS UAS family; UAS is 99.0 2.7E-09 5.8E-14 83.2 10.0 93 43-135 12-111 (114)
157 TIGR01626 ytfJ_HI0045 conserve 99.0 3.5E-09 7.6E-14 88.2 11.1 80 47-129 58-174 (184)
158 KOG0914 Thioredoxin-like prote 99.0 1.3E-09 2.9E-14 89.6 8.2 98 22-120 116-223 (265)
159 PRK11509 hydrogenase-1 operon 99.0 2.9E-09 6.4E-14 83.0 9.6 101 34-135 21-124 (132)
160 cd03009 TryX_like_TryX_NRX Try 99.0 3E-09 6.4E-14 85.3 9.2 67 47-113 17-111 (131)
161 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 3.2E-09 6.9E-14 84.1 9.1 93 34-129 7-120 (123)
162 cd02964 TryX_like_family Trypa 99.0 3.2E-09 6.9E-14 85.2 8.6 68 47-114 16-111 (132)
163 cd02959 ERp19 Endoplasmic reti 99.0 2.8E-09 6E-14 83.0 7.9 84 175-258 16-105 (117)
164 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 2.9E-09 6.3E-14 78.3 7.4 75 47-126 11-85 (89)
165 cd02966 TlpA_like_family TlpA- 98.9 3.2E-09 7E-14 82.8 8.2 74 47-120 18-116 (116)
166 KOG0913 Thiol-disulfide isomer 98.9 4.3E-10 9.4E-15 93.9 2.5 107 24-134 18-125 (248)
167 PF13098 Thioredoxin_2: Thiore 98.9 2.7E-09 5.7E-14 83.1 6.3 87 176-262 3-112 (112)
168 cd03073 PDI_b'_ERp72_ERp57 PDI 98.9 1.3E-08 2.7E-13 78.2 9.4 93 291-386 15-111 (111)
169 cd02960 AGR Anterior Gradient 98.9 6.2E-09 1.3E-13 81.2 7.7 79 43-122 18-100 (130)
170 TIGR00412 redox_disulf_2 small 98.9 1.1E-08 2.5E-13 72.9 7.5 73 182-262 2-75 (76)
171 PLN02919 haloacid dehalogenase 98.9 1.8E-08 4E-13 107.0 12.1 92 47-138 419-539 (1057)
172 smart00594 UAS UAS domain. 98.8 2.4E-08 5.1E-13 78.7 9.7 89 43-131 22-121 (122)
173 PHA02125 thioredoxin-like prot 98.8 1.9E-08 4.1E-13 71.7 7.6 50 182-237 2-51 (75)
174 PRK15317 alkyl hydroperoxide r 98.8 4.6E-07 1E-11 90.1 19.0 178 48-265 18-197 (517)
175 TIGR02740 TraF-like TraF-like 98.8 2.8E-08 6E-13 89.2 9.3 87 178-266 166-264 (271)
176 cd02973 TRX_GRX_like Thioredox 98.8 2.8E-08 6.1E-13 69.2 7.3 57 181-238 2-58 (67)
177 COG4232 Thiol:disulfide interc 98.8 4.9E-08 1.1E-12 93.4 10.9 100 33-134 457-567 (569)
178 PF13899 Thioredoxin_7: Thiore 98.8 2.2E-08 4.8E-13 72.8 6.6 67 43-110 12-81 (82)
179 PRK00293 dipZ thiol:disulfide 98.8 6.6E-08 1.4E-12 96.3 12.1 105 160-265 452-569 (571)
180 TIGR02738 TrbB type-F conjugat 98.8 7.7E-08 1.7E-12 78.3 10.2 87 177-265 49-152 (153)
181 PRK03147 thiol-disulfide oxido 98.7 8.8E-08 1.9E-12 80.8 10.8 88 177-264 60-170 (173)
182 cd02967 mauD Methylamine utili 98.7 2.4E-08 5.2E-13 77.9 6.7 60 47-106 20-82 (114)
183 PRK14018 trifunctional thiored 98.7 6.7E-08 1.4E-12 93.5 10.9 88 176-263 54-170 (521)
184 cd03012 TlpA_like_DipZ_like Tl 98.7 4.8E-08 1.1E-12 77.6 8.4 75 47-121 22-125 (126)
185 PRK11509 hydrogenase-1 operon 98.7 1.5E-07 3.3E-12 73.5 10.7 105 161-267 18-125 (132)
186 PF13905 Thioredoxin_8: Thiore 98.7 9.7E-08 2.1E-12 71.7 9.4 66 178-243 1-93 (95)
187 cd02955 SSP411 TRX domain, SSP 98.7 9.3E-08 2E-12 74.8 9.4 78 168-246 6-94 (124)
188 TIGR02661 MauD methylamine deh 98.7 2.5E-07 5.5E-12 78.9 12.3 85 47-132 73-176 (189)
189 cd03010 TlpA_like_DsbE TlpA-li 98.7 7.5E-08 1.6E-12 76.7 8.3 80 177-258 24-126 (127)
190 PTZ00056 glutathione peroxidas 98.7 1.3E-07 2.9E-12 81.1 9.9 91 47-137 38-180 (199)
191 PLN02399 phospholipid hydroper 98.7 1.3E-07 2.7E-12 82.5 9.7 89 47-135 98-234 (236)
192 cd02981 PDI_b_family Protein D 98.7 3.4E-07 7.4E-12 69.0 10.9 94 164-264 3-96 (97)
193 TIGR03140 AhpF alkyl hydropero 98.7 2.2E-06 4.8E-11 85.2 19.4 178 48-265 19-198 (515)
194 PF08534 Redoxin: Redoxin; In 98.6 1.3E-07 2.9E-12 77.2 8.6 77 47-123 27-136 (146)
195 PRK15412 thiol:disulfide inter 98.6 3E-07 6.5E-12 78.2 10.8 88 177-267 67-177 (185)
196 TIGR00385 dsbE periplasmic pro 98.6 2.1E-07 4.4E-12 78.4 9.6 87 177-266 62-171 (173)
197 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2E-07 4.3E-12 68.5 8.3 75 178-258 12-86 (89)
198 cd03008 TryX_like_RdCVF Trypar 98.6 2.6E-07 5.6E-12 74.3 9.6 67 177-243 24-123 (146)
199 cd03009 TryX_like_TryX_NRX Try 98.6 2.3E-07 5E-12 74.3 9.1 68 177-244 17-111 (131)
200 cd02966 TlpA_like_family TlpA- 98.6 2.3E-07 4.9E-12 72.2 8.4 74 178-251 19-116 (116)
201 cd02958 UAS UAS family; UAS is 98.6 7.1E-07 1.5E-11 69.5 10.8 92 175-266 14-111 (114)
202 cd02964 TryX_like_family Trypa 98.6 3.7E-07 8.1E-12 73.1 9.1 67 177-243 16-110 (132)
203 PLN02412 probable glutathione 98.6 2.9E-07 6.3E-12 76.8 8.2 90 47-136 28-165 (167)
204 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 5.2E-07 1.1E-11 71.3 9.3 81 177-260 19-120 (123)
205 KOG0914 Thioredoxin-like prote 98.5 2E-07 4.3E-12 77.1 6.6 86 158-243 122-216 (265)
206 KOG0911 Glutaredoxin-related p 98.5 8.4E-07 1.8E-11 74.3 9.4 170 47-236 16-195 (227)
207 cd02967 mauD Methylamine utili 98.5 7.2E-07 1.6E-11 69.5 8.7 59 177-235 20-81 (114)
208 COG0526 TrxA Thiol-disulfide i 98.5 7.9E-07 1.7E-11 69.5 8.5 73 48-120 32-107 (127)
209 cd02983 P5_C P5 family, C-term 98.5 5.6E-06 1.2E-10 65.6 13.2 111 160-270 2-119 (130)
210 smart00594 UAS UAS domain. 98.5 2.3E-06 5E-11 67.3 10.8 97 166-262 15-121 (122)
211 TIGR02540 gpx7 putative glutat 98.5 9E-07 1.9E-11 72.9 8.5 87 47-133 21-151 (153)
212 KOG2501 Thioredoxin, nucleored 98.5 3.9E-07 8.5E-12 72.5 6.0 67 47-113 32-126 (157)
213 cd02960 AGR Anterior Gradient 98.5 1.4E-06 3E-11 68.1 9.0 77 175-252 20-99 (130)
214 PRK13728 conjugal transfer pro 98.4 1.8E-06 3.8E-11 71.7 9.8 84 182-267 73-172 (181)
215 TIGR02196 GlrX_YruB Glutaredox 98.4 9.5E-07 2.1E-11 62.7 6.7 68 52-131 2-73 (74)
216 PLN02919 haloacid dehalogenase 98.4 1.3E-06 2.9E-11 93.1 10.6 91 177-267 419-537 (1057)
217 cd02969 PRX_like1 Peroxiredoxi 98.4 3.1E-06 6.8E-11 71.1 10.8 67 47-113 24-121 (171)
218 cd00340 GSH_Peroxidase Glutath 98.4 1.1E-06 2.4E-11 72.2 7.6 42 47-89 21-63 (152)
219 cd01659 TRX_superfamily Thiore 98.4 1.5E-06 3.4E-11 59.5 7.1 60 52-112 1-63 (69)
220 cd03074 PDI_b'_Calsequestrin_C 98.4 6.6E-06 1.4E-10 60.0 9.8 109 273-386 1-120 (120)
221 TIGR03143 AhpF_homolog putativ 98.3 4.2E-05 9.2E-10 76.7 19.2 195 170-382 357-554 (555)
222 PF13192 Thioredoxin_3: Thiore 98.3 2.5E-06 5.5E-11 60.8 7.5 72 54-132 4-76 (76)
223 cd03012 TlpA_like_DipZ_like Tl 98.3 2.8E-06 6.1E-11 67.4 8.5 75 177-251 22-124 (126)
224 PF13728 TraF: F plasmid trans 98.3 2.8E-06 6E-11 73.5 8.9 84 47-130 119-213 (215)
225 cd03066 PDI_b_Calsequestrin_mi 98.3 1.4E-05 2.9E-10 60.7 10.7 96 162-265 2-100 (102)
226 PF07912 ERp29_N: ERp29, N-ter 98.3 3E-05 6.5E-10 58.7 11.9 105 159-266 3-119 (126)
227 PF13899 Thioredoxin_7: Thiore 98.2 4.5E-06 9.7E-11 60.6 7.1 65 175-240 14-81 (82)
228 cd02991 UAS_ETEA UAS family, E 98.2 5.6E-06 1.2E-10 64.1 7.9 92 43-135 12-113 (116)
229 cd03069 PDI_b_ERp57 PDIb famil 98.2 1.2E-05 2.6E-10 61.3 9.5 94 163-265 3-103 (104)
230 KOG1672 ATP binding protein [P 98.2 1.6E-06 3.5E-11 70.6 4.7 94 30-125 66-160 (211)
231 PF02114 Phosducin: Phosducin; 98.2 3.3E-06 7.1E-11 75.1 6.5 103 29-133 124-236 (265)
232 KOG2603 Oligosaccharyltransfer 98.2 3.7E-05 8.1E-10 67.7 12.8 109 27-135 37-166 (331)
233 cd02981 PDI_b_family Protein D 98.2 2.1E-05 4.5E-10 59.2 9.8 95 276-384 2-96 (97)
234 TIGR02200 GlrX_actino Glutared 98.2 5.9E-06 1.3E-10 59.2 6.2 56 52-114 2-62 (77)
235 COG4232 Thiol:disulfide interc 98.2 1.1E-05 2.3E-10 77.7 9.5 103 163-265 457-567 (569)
236 PF03190 Thioredox_DsbH: Prote 98.2 8.3E-06 1.8E-10 66.1 7.5 82 30-112 18-112 (163)
237 cd03017 PRX_BCP Peroxiredoxin 98.2 9.3E-06 2E-10 65.7 8.0 83 47-129 22-137 (140)
238 PTZ00256 glutathione peroxidas 98.1 1.1E-05 2.3E-10 68.6 8.5 89 47-135 39-181 (183)
239 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 1.4E-05 2.9E-10 63.2 8.2 68 47-114 24-120 (124)
240 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 4.9E-05 1.1E-09 58.5 10.7 101 163-266 2-108 (111)
241 TIGR02180 GRX_euk Glutaredoxin 98.1 7.1E-06 1.5E-10 59.9 5.8 59 52-114 1-64 (84)
242 cd03069 PDI_b_ERp57 PDIb famil 98.1 3.3E-05 7.1E-10 58.8 9.6 96 275-385 2-103 (104)
243 TIGR02739 TraF type-F conjugat 98.1 2E-05 4.4E-10 69.3 9.4 89 47-135 149-248 (256)
244 KOG2501 Thioredoxin, nucleored 98.1 7.6E-06 1.6E-10 65.3 6.0 68 177-244 32-127 (157)
245 COG2143 Thioredoxin-related pr 98.1 4.5E-05 9.7E-10 60.0 9.9 88 173-260 37-143 (182)
246 PLN02399 phospholipid hydroper 98.1 3E-05 6.5E-10 67.8 10.1 90 177-266 98-234 (236)
247 PF08534 Redoxin: Redoxin; In 98.1 2.2E-05 4.7E-10 64.1 8.7 78 177-254 27-136 (146)
248 cd03066 PDI_b_Calsequestrin_mi 98.1 7.4E-05 1.6E-09 56.7 10.6 97 275-385 2-100 (102)
249 TIGR02661 MauD methylamine deh 98.0 4.8E-05 1.1E-09 64.9 10.1 85 177-263 73-176 (189)
250 PF13728 TraF: F plasmid trans 98.0 3.6E-05 7.7E-10 66.7 9.3 84 178-261 120-213 (215)
251 PTZ00056 glutathione peroxidas 98.0 4E-05 8.7E-10 65.8 9.5 89 177-266 38-178 (199)
252 KOG0913 Thiol-disulfide isomer 98.0 2.9E-06 6.2E-11 71.4 2.3 100 161-265 25-125 (248)
253 PF02114 Phosducin: Phosducin; 98.0 8.6E-05 1.9E-09 66.2 11.6 104 159-265 124-237 (265)
254 PF13192 Thioredoxin_3: Thiore 98.0 5.5E-05 1.2E-09 53.9 8.4 71 185-263 5-76 (76)
255 cd02969 PRX_like1 Peroxiredoxi 98.0 8.8E-05 1.9E-09 62.3 10.8 90 177-268 24-154 (171)
256 PRK13703 conjugal pilus assemb 98.0 4.2E-05 9.2E-10 66.9 8.9 88 48-135 143-241 (248)
257 cd03015 PRX_Typ2cys Peroxiredo 97.9 4.7E-05 1E-09 64.1 8.6 87 47-133 28-155 (173)
258 PRK10877 protein disulfide iso 97.9 2.9E-05 6.3E-10 68.2 7.3 82 48-134 107-230 (232)
259 cd01659 TRX_superfamily Thiore 97.9 5E-05 1.1E-09 51.7 7.2 60 182-242 1-63 (69)
260 COG0526 TrxA Thiol-disulfide i 97.9 6.5E-05 1.4E-09 58.4 8.7 67 178-244 32-101 (127)
261 PLN02412 probable glutathione 97.9 9.9E-05 2.1E-09 61.6 9.8 90 177-266 28-164 (167)
262 TIGR02196 GlrX_YruB Glutaredox 97.9 6.4E-05 1.4E-09 53.0 7.3 68 182-262 2-73 (74)
263 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 0.00016 3.5E-09 55.5 9.8 72 193-265 33-110 (111)
264 cd02970 PRX_like2 Peroxiredoxi 97.9 6.1E-05 1.3E-09 61.6 7.9 46 47-92 22-69 (149)
265 PF06110 DUF953: Eukaryotic pr 97.9 9.2E-05 2E-09 57.0 8.1 66 47-112 18-99 (119)
266 PF07912 ERp29_N: ERp29, N-ter 97.9 0.00026 5.7E-09 53.6 10.2 102 30-134 4-118 (126)
267 PF14595 Thioredoxin_9: Thiore 97.8 4.5E-05 9.7E-10 60.2 6.4 71 47-118 40-114 (129)
268 cd03068 PDI_b_ERp72 PDIb famil 97.8 0.00016 3.4E-09 55.2 9.1 96 162-265 2-107 (107)
269 PRK00522 tpx lipid hydroperoxi 97.8 0.0001 2.3E-09 61.4 8.9 67 47-114 43-143 (167)
270 PRK11200 grxA glutaredoxin 1; 97.8 6.9E-05 1.5E-09 54.7 6.4 75 51-134 2-82 (85)
271 KOG2603 Oligosaccharyltransfer 97.8 0.00056 1.2E-08 60.5 12.7 113 158-270 38-170 (331)
272 KOG3425 Uncharacterized conser 97.8 0.00011 2.3E-09 55.1 7.0 65 47-111 24-104 (128)
273 PF14595 Thioredoxin_9: Thiore 97.8 6.4E-05 1.4E-09 59.4 6.0 80 165-245 28-110 (129)
274 TIGR03137 AhpC peroxiredoxin. 97.8 0.00014 3E-09 62.0 8.5 86 47-132 30-153 (187)
275 cd03014 PRX_Atyp2cys Peroxired 97.8 0.00015 3.2E-09 58.9 8.3 72 47-119 25-127 (143)
276 cd02968 SCO SCO (an acronym fo 97.8 0.00011 2.4E-09 59.5 7.6 43 47-89 21-68 (142)
277 cd00340 GSH_Peroxidase Glutath 97.7 0.00012 2.6E-09 60.1 7.2 41 178-219 22-63 (152)
278 PRK10606 btuE putative glutath 97.7 0.00018 3.9E-09 60.5 8.3 42 47-89 24-66 (183)
279 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 6.3E-05 1.4E-09 64.7 5.6 76 48-131 77-197 (197)
280 PRK09437 bcp thioredoxin-depen 97.7 0.00022 4.9E-09 58.7 8.7 80 47-126 29-144 (154)
281 PRK10954 periplasmic protein d 97.7 0.00043 9.2E-09 60.0 10.5 38 48-85 37-77 (207)
282 PF07449 HyaE: Hydrogenase-1 e 97.7 0.00015 3.2E-09 54.5 6.5 92 30-123 9-103 (107)
283 TIGR01626 ytfJ_HI0045 conserve 97.7 0.00017 3.6E-09 60.4 7.4 80 178-260 59-174 (184)
284 cd03018 PRX_AhpE_like Peroxire 97.6 0.00038 8.3E-09 56.9 9.2 74 48-121 28-133 (149)
285 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00049 1.1E-08 49.9 8.2 105 274-384 2-110 (112)
286 TIGR02540 gpx7 putative glutat 97.6 0.00033 7.1E-09 57.6 8.6 42 177-218 21-63 (153)
287 PRK11657 dsbG disulfide isomer 97.6 0.00031 6.7E-09 62.6 9.0 83 48-132 117-249 (251)
288 cd02971 PRX_family Peroxiredox 97.6 0.00025 5.5E-09 57.2 7.8 43 47-89 21-65 (140)
289 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00026 5.6E-09 49.7 6.8 51 52-108 2-56 (73)
290 TIGR02739 TraF type-F conjugat 97.6 0.00051 1.1E-08 60.6 9.8 89 178-266 150-248 (256)
291 cd03068 PDI_b_ERp72 PDIb famil 97.6 0.00059 1.3E-08 52.1 9.0 96 275-384 2-106 (107)
292 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00018 3.9E-09 52.3 5.9 55 182-238 1-60 (84)
293 KOG3414 Component of the U4/U6 97.6 0.00041 8.9E-09 52.4 7.5 76 39-114 13-89 (142)
294 cd02991 UAS_ETEA UAS family, E 97.6 0.00064 1.4E-08 52.6 9.0 91 175-266 14-113 (116)
295 PF00578 AhpC-TSA: AhpC/TSA fa 97.6 0.00045 9.8E-09 54.4 8.5 67 177-243 24-119 (124)
296 TIGR02183 GRXA Glutaredoxin, G 97.6 0.00017 3.8E-09 52.7 5.5 75 51-134 1-81 (86)
297 PF00462 Glutaredoxin: Glutare 97.6 0.00039 8.5E-09 46.9 6.8 54 52-113 1-58 (60)
298 cd03017 PRX_BCP Peroxiredoxin 97.6 0.00036 7.8E-09 56.3 7.9 81 178-258 23-135 (140)
299 PRK13190 putative peroxiredoxi 97.5 0.00046 1E-08 59.5 8.2 88 47-134 26-153 (202)
300 PRK13703 conjugal pilus assemb 97.5 0.00079 1.7E-08 59.1 9.4 88 178-265 143-240 (248)
301 PF11009 DUF2847: Protein of u 97.4 0.00081 1.8E-08 50.2 7.6 76 38-114 8-90 (105)
302 PTZ00256 glutathione peroxidas 97.4 0.0017 3.6E-08 55.1 10.5 42 178-219 40-83 (183)
303 PF13462 Thioredoxin_4: Thiore 97.4 0.0017 3.7E-08 53.8 10.3 82 47-133 11-162 (162)
304 PF05768 DUF836: Glutaredoxin- 97.4 0.00047 1E-08 49.7 5.9 78 52-132 2-81 (81)
305 cd03419 GRX_GRXh_1_2_like Glut 97.4 0.00044 9.6E-09 50.0 5.8 57 52-114 2-63 (82)
306 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.002 4.2E-08 46.9 8.5 93 168-263 10-109 (112)
307 TIGR02200 GlrX_actino Glutared 97.4 0.00056 1.2E-08 48.7 6.0 52 182-240 2-58 (77)
308 PRK10382 alkyl hydroperoxide r 97.4 0.0016 3.5E-08 55.1 9.5 87 47-133 30-154 (187)
309 PRK15000 peroxidase; Provision 97.4 0.0022 4.7E-08 55.1 10.4 86 47-132 33-159 (200)
310 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0017 3.8E-08 53.1 8.9 33 47-79 4-36 (154)
311 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.00089 1.9E-08 47.0 6.0 51 52-108 1-54 (72)
312 TIGR02190 GlrX-dom Glutaredoxi 97.3 0.00096 2.1E-08 47.8 6.1 60 47-114 5-67 (79)
313 cd02970 PRX_like2 Peroxiredoxi 97.2 0.0019 4.1E-08 52.6 8.4 46 178-223 24-70 (149)
314 KOG0911 Glutaredoxin-related p 97.2 0.0053 1.1E-07 52.0 10.7 81 176-258 15-95 (227)
315 PRK00522 tpx lipid hydroperoxi 97.2 0.0031 6.8E-08 52.6 9.4 42 178-220 44-86 (167)
316 cd03015 PRX_Typ2cys Peroxiredo 97.2 0.0029 6.2E-08 53.2 9.2 88 178-265 29-156 (173)
317 cd02066 GRX_family Glutaredoxi 97.2 0.0012 2.6E-08 46.0 5.9 54 52-113 2-59 (72)
318 PF03190 Thioredox_DsbH: Prote 97.1 0.0033 7.2E-08 51.2 8.7 109 159-268 19-146 (163)
319 TIGR03140 AhpF alkyl hydropero 97.1 0.0036 7.8E-08 62.4 10.6 95 33-133 102-197 (515)
320 cd03071 PDI_b'_NRX PDIb' famil 97.1 0.0083 1.8E-07 44.1 9.4 92 291-386 14-115 (116)
321 PF11009 DUF2847: Protein of u 97.1 0.003 6.5E-08 47.2 7.4 92 167-258 7-104 (105)
322 PF06110 DUF953: Eukaryotic pr 97.1 0.003 6.5E-08 48.7 7.7 66 177-242 18-99 (119)
323 PHA03050 glutaredoxin; Provisi 97.1 0.0015 3.2E-08 49.8 5.9 59 51-114 14-79 (108)
324 PRK11200 grxA glutaredoxin 1; 97.1 0.0022 4.8E-08 46.7 6.7 76 181-266 2-83 (85)
325 cd03016 PRX_1cys Peroxiredoxin 97.1 0.0083 1.8E-07 51.8 11.2 84 50-133 28-152 (203)
326 PRK13599 putative peroxiredoxi 97.1 0.011 2.3E-07 51.4 11.8 85 48-132 28-153 (215)
327 TIGR02189 GlrX-like_plant Glut 97.1 0.0013 2.9E-08 49.3 5.3 56 51-114 9-71 (99)
328 cd03019 DsbA_DsbA DsbA family, 97.1 0.0038 8.3E-08 52.6 8.9 38 47-84 14-51 (178)
329 TIGR02181 GRX_bact Glutaredoxi 97.0 0.0017 3.7E-08 46.5 5.6 54 52-113 1-58 (79)
330 KOG3425 Uncharacterized conser 97.0 0.005 1.1E-07 46.4 8.0 65 177-241 24-104 (128)
331 TIGR03137 AhpC peroxiredoxin. 97.0 0.0041 8.8E-08 52.9 8.8 87 177-263 30-153 (187)
332 cd03418 GRX_GRXb_1_3_like Glut 97.0 0.0028 6.2E-08 44.8 6.6 55 52-114 2-61 (75)
333 cd03027 GRX_DEP Glutaredoxin ( 97.0 0.0031 6.7E-08 44.4 6.5 55 52-114 3-61 (73)
334 cd02968 SCO SCO (an acronym fo 97.0 0.0026 5.6E-08 51.4 7.0 44 177-220 21-69 (142)
335 cd02976 NrdH NrdH-redoxin (Nrd 97.0 0.0037 8.1E-08 43.7 6.9 67 182-261 2-72 (73)
336 PF02966 DIM1: Mitosis protein 97.0 0.0053 1.1E-07 47.4 7.9 74 39-113 10-85 (133)
337 PRK10329 glutaredoxin-like pro 97.0 0.0035 7.7E-08 45.0 6.7 69 52-132 3-74 (81)
338 PTZ00137 2-Cys peroxiredoxin; 96.9 0.0092 2E-07 53.1 10.3 86 47-132 97-222 (261)
339 PRK15317 alkyl hydroperoxide r 96.9 0.12 2.5E-06 51.8 19.4 181 174-383 14-195 (517)
340 cd03029 GRX_hybridPRX5 Glutare 96.9 0.0036 7.7E-08 43.9 6.0 55 52-114 3-60 (72)
341 COG0695 GrxC Glutaredoxin and 96.9 0.0031 6.7E-08 45.2 5.6 51 52-108 3-59 (80)
342 PF05768 DUF836: Glutaredoxin- 96.9 0.0043 9.3E-08 44.7 6.3 80 181-263 1-81 (81)
343 PRK13189 peroxiredoxin; Provis 96.8 0.011 2.5E-07 51.6 10.0 87 47-133 34-161 (222)
344 cd03018 PRX_AhpE_like Peroxire 96.8 0.0051 1.1E-07 50.2 7.5 42 179-220 29-72 (149)
345 PF07449 HyaE: Hydrogenase-1 e 96.8 0.0076 1.6E-07 45.4 7.6 83 159-242 8-92 (107)
346 PF00462 Glutaredoxin: Glutare 96.8 0.0077 1.7E-07 40.4 6.9 51 182-238 1-55 (60)
347 cd02971 PRX_family Peroxiredox 96.8 0.0077 1.7E-07 48.5 8.0 44 177-220 21-66 (140)
348 cd02972 DsbA_family DsbA famil 96.7 0.0056 1.2E-07 45.5 6.4 59 52-110 1-91 (98)
349 KOG1672 ATP binding protein [P 96.7 0.0045 9.8E-08 50.9 6.0 82 160-243 66-148 (211)
350 PRK09437 bcp thioredoxin-depen 96.7 0.013 2.8E-07 48.1 8.8 44 177-220 29-74 (154)
351 KOG3414 Component of the U4/U6 96.6 0.012 2.7E-07 44.6 7.5 80 169-248 13-93 (142)
352 PTZ00253 tryparedoxin peroxida 96.6 0.012 2.7E-07 50.5 8.7 67 47-113 35-137 (199)
353 PRK13191 putative peroxiredoxi 96.6 0.013 2.8E-07 50.9 8.8 87 47-133 32-159 (215)
354 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0069 1.5E-07 43.6 5.9 53 182-238 2-59 (82)
355 PRK15000 peroxidase; Provision 96.5 0.019 4E-07 49.4 9.0 88 177-264 33-160 (200)
356 PRK10382 alkyl hydroperoxide r 96.4 0.028 6.1E-07 47.6 9.4 86 178-263 31-153 (187)
357 cd03014 PRX_Atyp2cys Peroxired 96.4 0.012 2.6E-07 47.6 6.9 57 177-234 25-85 (143)
358 TIGR02190 GlrX-dom Glutaredoxi 96.4 0.013 2.9E-07 41.9 6.3 54 179-238 7-63 (79)
359 TIGR02183 GRXA Glutaredoxin, G 96.3 0.012 2.6E-07 42.9 5.8 74 182-265 2-81 (86)
360 PRK13190 putative peroxiredoxi 96.3 0.023 5E-07 48.9 8.5 88 178-265 27-153 (202)
361 TIGR02194 GlrX_NrdH Glutaredox 96.3 0.016 3.5E-07 40.6 6.0 66 183-260 2-70 (72)
362 PRK10638 glutaredoxin 3; Provi 96.2 0.015 3.3E-07 42.0 6.0 55 52-114 4-62 (83)
363 cd02066 GRX_family Glutaredoxi 96.2 0.017 3.6E-07 40.0 5.9 51 182-238 2-56 (72)
364 TIGR00365 monothiol glutaredox 96.2 0.023 5E-07 42.4 6.9 48 58-113 25-76 (97)
365 PF02966 DIM1: Mitosis protein 96.0 0.097 2.1E-06 40.6 9.2 71 168-239 9-80 (133)
366 PRK10877 protein disulfide iso 95.9 0.044 9.5E-07 48.3 8.5 81 177-265 106-230 (232)
367 cd03028 GRX_PICOT_like Glutare 95.9 0.025 5.4E-07 41.6 5.8 48 58-113 21-72 (90)
368 cd03418 GRX_GRXb_1_3_like Glut 95.9 0.039 8.4E-07 38.8 6.6 51 182-238 2-57 (75)
369 cd03016 PRX_1cys Peroxiredoxin 95.8 0.054 1.2E-06 46.7 8.6 86 180-265 28-153 (203)
370 PF13743 Thioredoxin_5: Thiore 95.8 0.037 8.1E-07 46.5 7.3 30 54-83 2-31 (176)
371 TIGR02181 GRX_bact Glutaredoxi 95.8 0.029 6.3E-07 40.0 5.6 51 182-238 1-55 (79)
372 PHA03050 glutaredoxin; Provisi 95.8 0.049 1.1E-06 41.5 7.0 55 181-238 14-75 (108)
373 cd03020 DsbA_DsbC_DsbG DsbA fa 95.7 0.059 1.3E-06 46.3 8.4 75 178-261 77-196 (197)
374 TIGR02189 GlrX-like_plant Glut 95.7 0.031 6.7E-07 41.9 5.8 52 181-238 9-67 (99)
375 KOG3171 Conserved phosducin-li 95.7 0.17 3.6E-06 42.6 10.3 103 127-242 116-221 (273)
376 cd03027 GRX_DEP Glutaredoxin ( 95.6 0.06 1.3E-06 37.7 6.6 52 181-238 2-57 (73)
377 PRK10329 glutaredoxin-like pro 95.6 0.066 1.4E-06 38.4 6.9 73 181-266 2-77 (81)
378 PRK10606 btuE putative glutath 95.6 0.049 1.1E-06 45.9 7.0 42 177-219 24-66 (183)
379 COG0695 GrxC Glutaredoxin and 95.5 0.047 1E-06 39.0 5.9 51 182-238 3-59 (80)
380 PTZ00137 2-Cys peroxiredoxin; 95.5 0.1 2.3E-06 46.5 9.2 86 178-263 98-222 (261)
381 PRK10824 glutaredoxin-4; Provi 95.5 0.041 8.9E-07 42.3 5.8 49 58-114 28-80 (115)
382 cd03029 GRX_hybridPRX5 Glutare 95.4 0.067 1.5E-06 37.3 6.2 52 181-238 2-56 (72)
383 KOG3170 Conserved phosducin-li 95.4 0.068 1.5E-06 44.4 6.8 102 28-133 89-199 (240)
384 PRK13599 putative peroxiredoxi 95.2 0.1 2.2E-06 45.4 8.1 85 180-264 31-154 (215)
385 KOG1752 Glutaredoxin and relat 95.2 0.082 1.8E-06 39.7 6.4 60 49-114 13-77 (104)
386 PRK13189 peroxiredoxin; Provis 95.1 0.14 2.9E-06 44.9 8.5 85 180-264 38-161 (222)
387 cd02972 DsbA_family DsbA famil 95.1 0.096 2.1E-06 38.6 6.7 59 182-240 1-91 (98)
388 KOG2640 Thioredoxin [Function 95.0 0.011 2.3E-07 52.7 1.3 128 48-208 76-204 (319)
389 PRK11657 dsbG disulfide isomer 95.0 0.2 4.3E-06 44.7 9.4 82 178-262 117-248 (251)
390 KOG3170 Conserved phosducin-li 94.9 0.17 3.6E-06 42.1 7.7 103 158-265 89-200 (240)
391 PRK12759 bifunctional gluaredo 94.7 0.065 1.4E-06 51.5 6.0 54 52-113 4-69 (410)
392 PTZ00253 tryparedoxin peroxida 94.3 0.3 6.5E-06 42.0 8.7 86 178-263 36-161 (199)
393 PRK13191 putative peroxiredoxi 94.3 0.28 6.1E-06 42.6 8.6 87 178-264 33-159 (215)
394 PRK10638 glutaredoxin 3; Provi 94.2 0.21 4.5E-06 36.0 6.3 51 182-238 4-58 (83)
395 PF00837 T4_deiodinase: Iodoth 93.9 0.78 1.7E-05 39.9 10.1 63 25-87 77-141 (237)
396 TIGR00365 monothiol glutaredox 93.9 0.36 7.9E-06 36.0 7.3 45 188-238 25-73 (97)
397 KOG3171 Conserved phosducin-li 93.6 0.3 6.5E-06 41.1 6.8 87 30-118 138-227 (273)
398 PF13743 Thioredoxin_5: Thiore 93.6 0.19 4E-06 42.2 5.8 34 184-217 2-35 (176)
399 PF00837 T4_deiodinase: Iodoth 93.4 1.5 3.2E-05 38.2 10.9 61 158-219 80-143 (237)
400 COG1331 Highly conserved prote 93.3 0.26 5.7E-06 49.2 7.2 80 34-114 30-121 (667)
401 cd03028 GRX_PICOT_like Glutare 92.9 0.34 7.5E-06 35.5 5.8 45 188-238 21-69 (90)
402 PRK10824 glutaredoxin-4; Provi 92.7 0.34 7.4E-06 37.2 5.6 45 188-238 28-76 (115)
403 PF01323 DSBA: DSBA-like thior 92.4 1.2 2.6E-05 37.8 9.4 32 52-83 2-34 (193)
404 KOG2792 Putative cytochrome C 92.4 3.2 6.9E-05 36.4 11.5 89 48-136 139-276 (280)
405 cd02978 KaiB_like KaiB-like fa 92.3 0.68 1.5E-05 32.0 6.0 60 51-110 3-63 (72)
406 cd03031 GRX_GRX_like Glutaredo 91.8 0.59 1.3E-05 37.7 6.2 54 52-113 2-69 (147)
407 KOG2640 Thioredoxin [Function 91.4 0.087 1.9E-06 47.1 1.1 86 178-266 76-162 (319)
408 COG3019 Predicted metal-bindin 91.3 2.9 6.3E-05 32.8 9.1 75 50-133 26-102 (149)
409 KOG1752 Glutaredoxin and relat 91.1 1.1 2.4E-05 33.7 6.7 54 181-238 15-73 (104)
410 cd03013 PRX5_like Peroxiredoxi 91.0 0.62 1.3E-05 38.2 5.8 57 48-104 29-93 (155)
411 PF13462 Thioredoxin_4: Thiore 90.8 0.92 2E-05 37.2 6.7 43 177-219 11-55 (162)
412 cd03023 DsbA_Com1_like DsbA fa 90.3 0.81 1.7E-05 37.1 5.9 37 178-215 5-41 (154)
413 COG1225 Bcp Peroxiredoxin [Pos 89.9 1.2 2.6E-05 36.3 6.3 58 47-105 29-91 (157)
414 cd03070 PDI_b_ERp44 PDIb famil 89.2 2.7 5.8E-05 30.8 7.1 82 276-373 2-84 (91)
415 cd02974 AhpF_NTD_N Alkyl hydro 89.0 5.1 0.00011 29.6 8.6 74 47-133 18-92 (94)
416 PRK12759 bifunctional gluaredo 88.9 1.2 2.5E-05 43.0 6.7 52 181-238 3-66 (410)
417 cd03019 DsbA_DsbA DsbA family, 88.8 0.81 1.8E-05 38.3 5.0 41 177-217 14-54 (178)
418 TIGR02654 circ_KaiB circadian 87.9 2.7 5.9E-05 30.3 6.3 75 49-124 3-78 (87)
419 PRK09301 circadian clock prote 87.2 2.9 6.2E-05 31.2 6.2 77 48-125 5-82 (103)
420 COG1651 DsbG Protein-disulfide 86.0 4.6 0.0001 35.8 8.4 37 93-134 206-242 (244)
421 cd02990 UAS_FAF1 UAS family, F 83.6 19 0.00042 28.6 9.8 91 45-135 18-133 (136)
422 TIGR02742 TrbC_Ftype type-F co 82.6 1.7 3.7E-05 34.2 3.5 42 91-132 60-112 (130)
423 cd03060 GST_N_Omega_like GST_N 81.7 8.5 0.00018 26.3 6.6 51 53-107 2-53 (71)
424 COG1999 Uncharacterized protei 81.3 16 0.00035 31.5 9.5 62 47-108 66-136 (207)
425 PHA03075 glutaredoxin-like pro 80.6 3.1 6.6E-05 31.5 4.0 36 49-88 2-37 (123)
426 cd02974 AhpF_NTD_N Alkyl hydro 80.5 21 0.00045 26.4 9.3 73 178-263 19-91 (94)
427 cd03070 PDI_b_ERp44 PDIb famil 80.2 15 0.00033 26.8 7.5 71 176-254 14-85 (91)
428 cd03074 PDI_b'_Calsequestrin_C 79.4 24 0.00052 26.5 9.6 101 165-265 6-119 (120)
429 cd02978 KaiB_like KaiB-like fa 79.4 10 0.00022 26.3 6.0 59 181-239 3-62 (72)
430 TIGR01617 arsC_related transcr 79.3 3.8 8.1E-05 31.7 4.5 34 53-92 2-35 (117)
431 PRK10954 periplasmic protein d 77.9 3.4 7.4E-05 35.7 4.3 40 178-217 37-79 (207)
432 COG4545 Glutaredoxin-related p 77.7 4.7 0.0001 27.8 3.8 34 183-222 5-38 (85)
433 cd02977 ArsC_family Arsenate R 77.7 2.2 4.7E-05 32.2 2.7 33 52-90 1-33 (105)
434 cd03031 GRX_GRX_like Glutaredo 77.6 9.3 0.0002 30.9 6.3 51 182-238 2-66 (147)
435 cd03041 GST_N_2GST_N GST_N fam 77.3 13 0.00028 26.0 6.5 70 52-133 2-75 (77)
436 PF07689 KaiB: KaiB domain; I 76.3 1.5 3.2E-05 31.4 1.3 53 55-107 3-56 (82)
437 PF13778 DUF4174: Domain of un 76.1 29 0.00063 26.8 8.6 87 295-385 13-111 (118)
438 cd03051 GST_N_GTT2_like GST_N 76.0 4 8.7E-05 28.0 3.5 52 53-108 2-57 (74)
439 cd02977 ArsC_family Arsenate R 74.3 4.3 9.4E-05 30.6 3.5 77 183-265 2-86 (105)
440 cd00570 GST_N_family Glutathio 74.2 9.9 0.00021 25.2 5.2 51 53-107 2-54 (71)
441 cd03035 ArsC_Yffb Arsenate Red 73.4 3.4 7.4E-05 31.2 2.7 34 52-91 1-34 (105)
442 cd03040 GST_N_mPGES2 GST_N fam 73.3 16 0.00035 25.3 6.1 75 52-135 2-76 (77)
443 PF02630 SCO1-SenC: SCO1/SenC; 72.7 16 0.00036 30.4 6.9 43 47-89 51-97 (174)
444 cd03036 ArsC_like Arsenate Red 72.6 3.6 7.9E-05 31.4 2.7 34 52-91 1-34 (111)
445 COG1225 Bcp Peroxiredoxin [Pos 71.2 16 0.00034 29.9 6.2 54 178-231 30-88 (157)
446 PF09673 TrbC_Ftype: Type-F co 71.1 11 0.00023 29.0 5.0 21 91-111 60-80 (113)
447 PF13417 GST_N_3: Glutathione 70.0 27 0.00059 24.1 6.6 69 54-134 1-70 (75)
448 TIGR02742 TrbC_Ftype type-F co 69.7 8.1 0.00018 30.4 4.1 43 221-263 60-112 (130)
449 PRK01655 spxA transcriptional 69.5 5.5 0.00012 31.5 3.2 35 52-92 2-36 (131)
450 COG4545 Glutaredoxin-related p 69.2 4.1 8.9E-05 28.1 2.0 55 53-114 5-75 (85)
451 COG3531 Predicted protein-disu 69.2 7.7 0.00017 32.6 4.0 44 92-135 164-209 (212)
452 cd03037 GST_N_GRX2 GST_N famil 69.0 9.2 0.0002 26.1 4.0 51 53-107 2-52 (71)
453 PHA03075 glutaredoxin-like pro 67.9 11 0.00025 28.6 4.3 35 179-217 2-36 (123)
454 KOG2507 Ubiquitin regulatory p 66.2 21 0.00045 33.8 6.5 91 46-136 16-112 (506)
455 TIGR02654 circ_KaiB circadian 65.8 25 0.00055 25.4 5.6 72 181-254 5-77 (87)
456 cd03036 ArsC_like Arsenate Red 65.5 8.9 0.00019 29.3 3.6 32 183-220 2-33 (111)
457 cd03013 PRX5_like Peroxiredoxi 65.4 22 0.00048 29.0 6.1 53 178-230 29-88 (155)
458 COG3634 AhpF Alkyl hydroperoxi 65.3 85 0.0018 29.4 10.0 177 48-263 18-195 (520)
459 cd03059 GST_N_SspA GST_N famil 64.6 10 0.00022 25.9 3.6 69 53-133 2-71 (73)
460 cd03045 GST_N_Delta_Epsilon GS 64.5 7.8 0.00017 26.6 2.9 51 53-107 2-56 (74)
461 PF09822 ABC_transp_aux: ABC-t 64.4 1E+02 0.0022 27.7 10.9 71 31-102 8-88 (271)
462 PRK12559 transcriptional regul 64.1 8.2 0.00018 30.5 3.2 34 52-91 2-35 (131)
463 cd03032 ArsC_Spx Arsenate Redu 62.4 9.3 0.0002 29.4 3.2 34 52-91 2-35 (115)
464 PRK09301 circadian clock prote 62.2 30 0.00066 25.9 5.6 75 179-255 6-81 (103)
465 COG2761 FrnE Predicted dithiol 62.1 12 0.00026 32.4 4.0 40 93-136 175-214 (225)
466 cd03060 GST_N_Omega_like GST_N 62.0 36 0.00078 23.1 5.9 52 183-238 2-54 (71)
467 PF03032 Brevenin: Brevenin/es 61.0 5.5 0.00012 24.9 1.3 17 1-17 3-19 (46)
468 cd03055 GST_N_Omega GST_N fami 60.9 43 0.00094 24.1 6.4 53 51-107 18-71 (89)
469 PF09673 TrbC_Ftype: Type-F co 59.9 40 0.00087 25.8 6.3 45 195-241 36-80 (113)
470 cd03025 DsbA_FrnE_like DsbA fa 57.9 14 0.00031 31.1 4.0 28 52-79 3-30 (193)
471 PF06053 DUF929: Domain of unk 56.5 41 0.00088 29.9 6.4 59 46-111 56-114 (249)
472 cd00570 GST_N_family Glutathio 56.1 45 0.00099 21.8 5.7 51 184-238 3-55 (71)
473 PRK13344 spxA transcriptional 55.9 14 0.00029 29.3 3.1 34 52-91 2-35 (132)
474 COG1331 Highly conserved prote 55.6 43 0.00092 34.1 7.1 107 158-267 24-151 (667)
475 PRK13730 conjugal transfer pil 55.3 19 0.00041 30.6 3.9 41 91-132 151-191 (212)
476 TIGR01617 arsC_related transcr 53.8 26 0.00057 26.9 4.4 33 183-221 2-34 (117)
477 PF07689 KaiB: KaiB domain; I 51.8 11 0.00023 27.0 1.7 54 185-238 3-57 (82)
478 cd03033 ArsC_15kD Arsenate Red 51.7 19 0.00041 27.6 3.2 32 52-89 2-33 (113)
479 PF15243 ANAPC15: Anaphase-pro 51.0 29 0.00064 25.4 3.9 24 376-399 35-58 (92)
480 PF07315 DUF1462: Protein of u 50.9 72 0.0016 23.1 5.7 46 313-358 21-73 (93)
481 PRK01655 spxA transcriptional 50.4 34 0.00073 27.0 4.6 33 182-220 2-34 (131)
482 PF08139 LPAM_1: Prokaryotic m 46.9 14 0.00031 19.6 1.3 11 2-12 8-18 (25)
483 PF04134 DUF393: Protein of un 46.4 34 0.00075 25.9 4.1 58 54-113 1-61 (114)
484 cd03056 GST_N_4 GST_N family, 45.4 22 0.00049 24.1 2.6 51 53-107 2-56 (73)
485 COG5494 Predicted thioredoxin/ 45.0 58 0.0013 27.8 5.2 72 53-132 14-85 (265)
486 PF04592 SelP_N: Selenoprotein 43.6 81 0.0018 27.6 6.1 60 28-89 8-71 (238)
487 PF06053 DUF929: Domain of unk 43.2 93 0.002 27.7 6.6 77 161-249 45-122 (249)
488 cd03035 ArsC_Yffb Arsenate Red 42.6 26 0.00057 26.4 2.8 20 183-202 2-21 (105)
489 PF09822 ABC_transp_aux: ABC-t 42.2 2.6E+02 0.0056 25.1 10.6 73 159-232 6-88 (271)
490 PF06764 DUF1223: Protein of u 41.9 1.4E+02 0.0031 25.6 7.3 77 52-135 2-98 (202)
491 COG2761 FrnE Predicted dithiol 41.4 61 0.0013 28.2 5.1 44 222-270 174-217 (225)
492 KOG1422 Intracellular Cl- chan 40.6 1.6E+02 0.0035 25.3 7.2 65 59-135 20-85 (221)
493 cd03024 DsbA_FrnE DsbA family, 40.5 27 0.00058 29.7 2.9 37 91-131 164-200 (201)
494 PF06953 ArsD: Arsenical resis 40.1 74 0.0016 24.8 4.9 51 80-133 40-100 (123)
495 PF02402 Lysis_col: Lysis prot 39.8 13 0.00028 22.6 0.5 13 1-13 1-13 (46)
496 COG5510 Predicted small secret 39.7 33 0.00073 20.9 2.2 15 1-15 2-16 (44)
497 COG4837 Uncharacterized protei 39.3 46 0.001 24.2 3.3 68 313-385 28-102 (106)
498 COG3011 Predicted thiol-disulf 35.9 1.6E+02 0.0036 23.4 6.2 65 47-113 5-71 (137)
499 PRK09810 entericidin A; Provis 35.6 38 0.00081 20.6 2.0 10 1-10 2-11 (41)
500 COG3019 Predicted metal-bindin 35.3 1.2E+02 0.0025 24.2 5.2 44 182-231 28-71 (149)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=283.01 Aligned_cols=335 Identities=30% Similarity=0.453 Sum_probs=274.4
Q ss_pred CCCCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCcccHhHHHHcCCccc
Q 014216 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGF 103 (428)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~ 103 (428)
.....+..|+..+|+ ..+..+..++|.||||||+||+++.|++++++..+.. .+..+.|||..+..+|.+|+|+++
T Consensus 22 ~~~~~Vl~Lt~dnf~-~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy 100 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFK-ETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY 100 (493)
T ss_pred CcccceEEEecccHH-HHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence 456789999999999 6677899999999999999999999999999999986 588999999999999999999999
Q ss_pred cEEEEEeCCCCCccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCCeEEE
Q 014216 104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV 183 (428)
Q Consensus 104 P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v 183 (428)
||+.+|++|+....|.|.++.+.|..|+.++ +.+.+..+......+.+......+++
T Consensus 101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq-----------------------~gPa~~~l~~~~~a~~~l~~~~~~vi 157 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQ-----------------------SGPASKTLKTVDEAEEFLSKKDVVVI 157 (493)
T ss_pred CeEEEEecCCcceeccCcccHHHHHHHHHhc-----------------------cCCCceecccHHHHHhhccCCceEEE
Confidence 9999999998779999999999999999988 68889999877777666677778888
Q ss_pred EEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCc--CcEEEEEcCCCCCcccccCCCCHHHHHHH
Q 014216 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG--FPTILVFGADKDSPIPYEGARTAGAIESF 261 (428)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~--~P~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (428)
.|+... ......|..+|..+++.+.|+. +.+.+++++++... .|.+++++..++....|.|.++.+.|.+|
T Consensus 158 g~F~d~----~~~~~~~~~~a~~l~~d~~F~~---ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~F 230 (493)
T KOG0190|consen 158 GFFKDL----ESLAESFFDAASKLRDDYKFAH---TSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKF 230 (493)
T ss_pred EEeccc----ccchHHHHHHHHhccccceeec---cCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHH
Confidence 888753 2233778888888888999994 67888999998763 45588888777778888999999999999
Q ss_pred HHHHHhhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchh
Q 014216 262 ALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPD 341 (428)
Q Consensus 262 i~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~ 341 (428)
|..+ +.|.+..+|..+......+.-...+++|... .....+.+++.++.+|++|+++ ++|+++|...+..
T Consensus 231 i~~~-----~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~~~vAk~f~~~-l~Fi~~d~e~~~~ 300 (493)
T KOG0190|consen 231 IQEN-----SLPLVTEFTVANNAKIYSSFVKLGLDFFVFF----KCNRFEELRKKFEEVAKKFKGK-LRFILIDPESFAR 300 (493)
T ss_pred HHHh-----cccccceecccccceeeccccccceeEEecc----ccccHHHHHHHHHHHHHhcccc-eEEEEEChHHhhH
Confidence 9998 6799999988765555444334455555433 2236678999999999999998 9999999888888
Q ss_pred HHHHhCCCCCCCc-eEEEEeccCCccccCCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCccc
Q 014216 342 LENRVGVGGYGYP-ALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNL-PLDGTPSIV 402 (428)
Q Consensus 342 ~~~~~gl~~~~~P-~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~-~~~~~p~~~ 402 (428)
.+..||+.....| .+++.+...++|.+-.++.+.+.|+.|+.++++|+.... .-..+|+-.
T Consensus 301 ~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~ 363 (493)
T KOG0190|consen 301 VLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDN 363 (493)
T ss_pred HHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCccc
Confidence 9999999976777 444445455666555556898999999999999985443 344466433
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=2.1e-32 Score=269.39 Aligned_cols=307 Identities=28% Similarity=0.470 Sum_probs=240.0
Q ss_pred CCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhc---CceEEEEEcCcccHhHHHHcCCccccE
Q 014216 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQSLAQEYGIRGFPT 105 (428)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l~~~~~v~~~P~ 105 (428)
...+.+++..+|. .++.++++++|.||++||++|+++.|.|.+++..+. ..+.++.|||+++..+|++|+|.++|+
T Consensus 31 ~~~v~~l~~~~f~-~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 31 SEHVTVLTDSTFD-KFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT 109 (477)
T ss_pred CCCcEEcchhhHH-HHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccE
Confidence 4678999999999 556778899999999999999999999999998775 359999999999999999999999999
Q ss_pred EEEEeCCCCCccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCCeEEEEE
Q 014216 106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEF 185 (428)
Q Consensus 106 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f 185 (428)
+++|++|+.+ +|.|.++.+.+.+|+.+.+ .+.+..++.......+.....+.++.+
T Consensus 110 ~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~ 165 (477)
T PTZ00102 110 IKFFNKGNPV-NYSGGRTADGIVSWIKKLT-----------------------GPAVTEVESASEIKLIAKKIFVAFYGE 165 (477)
T ss_pred EEEEECCceE-EecCCCCHHHHHHHHHHhh-----------------------CCCceeecCHHHHHHhhccCcEEEEEE
Confidence 9999999765 9999999999999999884 667788877655554444455666666
Q ss_pred ECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 186 ~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
+.. ........|.++|..+++...|+.+... ..|.+.+|+.... ...+.+..+.++|.+||..+
T Consensus 166 ~~~---~~~~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~fI~~~ 229 (477)
T PTZ00102 166 YTS---KDSELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKDEE-GVELFMGKTKEELEEFVSTE 229 (477)
T ss_pred ecc---CCcHHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecCCC-CcccCCCCCHHHHHHHHHHc
Confidence 654 2357888999999999888888765311 2367788875544 34444456899999999988
Q ss_pred HhhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchh-HHH
Q 014216 266 LETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPD-LEN 344 (428)
Q Consensus 266 ~~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~-~~~ 344 (428)
+.|.+.+++..+.......+. .+++|+.. .+..+++.+.++++|++|+++ +.|+++|+..+.. ++.
T Consensus 230 -----~~P~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~~~~~~~~ 296 (477)
T PTZ00102 230 -----SFPLFAEINAENYRRYISSGK--DLVWFCGT-----TEDYDKYKSVVRKVARKLREK-YAFVWLDTEQFGSHAKE 296 (477)
T ss_pred -----CCCceeecCccchHHHhcCCc--cEEEEecC-----HHHHHHHHHHHHHHHHhccCc-eEEEEEechhcchhHHH
Confidence 689999999987765443333 33333322 133456889999999999998 9999999988876 888
Q ss_pred HhCCCCCCCceEEEEeccCCccccCCC----CCCHHHHHHHHHHHhcCCCCCC
Q 014216 345 RVGVGGYGYPALVALNVKKGVYTPLKS----AFELEHIVEFVKEAGRGGKGNL 393 (428)
Q Consensus 345 ~~gl~~~~~P~~~i~~~~~~~~~~~~~----~~~~~~i~~fi~~~~~g~~~~~ 393 (428)
.||++. +|++++.+. .++|. +.+ -.+.+.|.+|++++++|+....
T Consensus 297 ~~gi~~--~P~~~i~~~-~~~y~-~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~ 345 (477)
T PTZ00102 297 HLLIEE--FPGLAYQSP-AGRYL-LPPAKESFDSVEALIEFFKDVEAGKVEKS 345 (477)
T ss_pred hcCccc--CceEEEEcC-CcccC-CCccccccCCHHHHHHHHHHHhCCCCCcc
Confidence 999986 899877764 44553 333 2789999999999999965443
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.7e-32 Score=268.06 Aligned_cols=322 Identities=26% Similarity=0.455 Sum_probs=253.0
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCcccHhHHHHcCCccccEEE
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~P~~~ 107 (428)
.+..++.++|. .+++++++++|.||++||++|+++.|.|.++++.+.+ .+.|+.|||++++++|++++|.++|+++
T Consensus 2 ~v~~l~~~~~~-~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFD-DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHH-HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 46789999999 5567788999999999999999999999999988764 3999999999999999999999999999
Q ss_pred EEeCCCC-CccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc-cchHHHHhhcCCeEEEEE
Q 014216 108 VFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNFDELVLKSKDLWIVEF 185 (428)
Q Consensus 108 ~~~~g~~-~~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~~v~f 185 (428)
+|++|+. +..|.|.++.+.+.+|+.+.+ .+.+..++. +++..++ ..+.+.+|.|
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~-----------------------~~~~~~i~~~~~~~~~~-~~~~~~vi~~ 136 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQS-----------------------GPAVKEIETVADLEAFL-ADDDVVVIGF 136 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhc-----------------------CCCceeecCHHHHHHHH-hcCCcEEEEE
Confidence 9999987 789999999999999999874 567777864 5555554 5577778888
Q ss_pred ECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCc--ccccCCC--CHHHHHHH
Q 014216 186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP--IPYEGAR--TAGAIESF 261 (428)
Q Consensus 186 ~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~--~~y~g~~--~~~~i~~f 261 (428)
+.. ........|.++|..+.+...+... ..+..++.+++... |.+++|+...... ..|.|.. +.+.|..|
T Consensus 137 ~~~---~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 210 (462)
T TIGR01130 137 FKD---LDSELNDTFLSVAEKLRDVYFFFAH--SSDVAAFAKLGAFP-DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKF 210 (462)
T ss_pred ECC---CCcHHHHHHHHHHHHhhhccceEEe--cCCHHHHhhcCCCC-CcEEEecccccccccccccCcccCCHHHHHHH
Confidence 765 2257888999999999887664332 24557778888764 7777775443322 3566665 56899999
Q ss_pred HHHHHhhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchh
Q 014216 262 ALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPD 341 (428)
Q Consensus 262 i~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~ 341 (428)
+..+ +.|.+.+++..+........ +.+++++..+. .....+.+.+.++++|++|++..+.|+++|+..+..
T Consensus 211 i~~~-----~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~ 281 (462)
T TIGR01130 211 IRAE-----SLPLVGEFTQETAAKYFESG-PLVVLYYNVDE---SLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGR 281 (462)
T ss_pred HHHc-----CCCceEeeCCcchhhHhCCC-CceeEEEEecC---CchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHH
Confidence 9888 67999999877765554433 55554443221 111246788999999999997339999999988999
Q ss_pred HHHHhCCCCCCCceEEEEeccC-CccccCCC-CCCHHHHHHHHHHHhcCCCCCC
Q 014216 342 LENRVGVGGYGYPALVALNVKK-GVYTPLKS-AFELEHIVEFVKEAGRGGKGNL 393 (428)
Q Consensus 342 ~~~~~gl~~~~~P~~~i~~~~~-~~~~~~~~-~~~~~~i~~fi~~~~~g~~~~~ 393 (428)
++..||++...+|++++++..+ .+| .+.+ .++.+.|.+||+++++|+....
T Consensus 282 ~~~~~~~~~~~~P~~vi~~~~~~~~y-~~~~~~~~~~~i~~fi~~~~~g~~~~~ 334 (462)
T TIGR01130 282 ELEYFGLKAEKFPAVAIQDLEGNKKY-PMDQEEFSSENLEAFVKDFLDGKLKPY 334 (462)
T ss_pred HHHHcCCCccCCceEEEEeCCccccc-CCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence 9999999977799999998776 445 4444 8999999999999999985543
No 4
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=208.98 Aligned_cols=310 Identities=21% Similarity=0.396 Sum_probs=220.5
Q ss_pred CCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCcccHhHHHHcCCccccE
Q 014216 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPT 105 (428)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~P~ 105 (428)
+..+.+|+++ |.. .+.+..|+|.||+|||+||++++|.|.++...+++ -+.++++||...+.++.++||++|||
T Consensus 27 pt~VeDLddk-Fkd--nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 27 PTAVEDLDDK-FKD--NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT 103 (468)
T ss_pred chhhhhhhHH-hhh--cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence 3456666653 331 23578999999999999999999999999888876 48999999999999999999999999
Q ss_pred EEEEeCCCCCccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHH-HhhcCCeEEEE
Q 014216 106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDEL-VLKSKDLWIVE 184 (428)
Q Consensus 106 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~~v~ 184 (428)
+.+++++. ...|.|.++.++++.|..+. ..+.+.-++..+.... +...+.+.+|+
T Consensus 104 Ik~~kgd~-a~dYRG~R~Kd~iieFAhR~-----------------------a~aiI~pi~enQ~~fehlq~Rhq~ffVf 159 (468)
T KOG4277|consen 104 IKFFKGDH-AIDYRGGREKDAIIEFAHRC-----------------------AAAIIEPINENQIEFEHLQARHQPFFVF 159 (468)
T ss_pred EEEecCCe-eeecCCCccHHHHHHHHHhc-----------------------ccceeeecChhHHHHHHHhhccCceEEE
Confidence 99999876 58999999999999999887 3444555665443332 33456788898
Q ss_pred EECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhc-CCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 014216 185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF-NVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~-~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~ 263 (428)
|.+.. ..+...|..+|... +.+++.-. .+++++..+ ..+..|++.+|+.+ .+......+.+++..||.
T Consensus 160 ~Gtge----~PL~d~fidAASe~---~~~a~FfS-aseeVaPe~~~~kempaV~VFKDe---tf~i~de~dd~dLseWin 228 (468)
T KOG4277|consen 160 FGTGE----GPLFDAFIDAASEK---FSVARFFS-ASEEVAPEENDAKEMPAVAVFKDE---TFEIEDEGDDEDLSEWIN 228 (468)
T ss_pred EeCCC----CcHHHHHHHHhhhh---eeeeeeec-cccccCCcccchhhccceEEEccc---eeEEEecCchhHHHHHHh
Confidence 88643 33566666665543 33333322 234444444 35567999999754 222234457889999997
Q ss_pred HHHhhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCcc-chhhhchhHHHHHHHHHHHHhhcC-----cceEEEecCC
Q 014216 264 EQLETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDIL-DSKAEGRNKYLEMLLSVAEKFKRG-----HYSFVWAAAG 337 (428)
Q Consensus 264 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~-----~~~f~~id~~ 337 (428)
+. +.|.+-..+.....+ +-...++++++..+... .+......++.+..+++|+.+|+. .|.|++.|+
T Consensus 229 RE-----Rf~~fLa~dgflL~E-iG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDG- 301 (468)
T KOG4277|consen 229 RE-----RFPGFLAADGFLLAE-IGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDG- 301 (468)
T ss_pred Hh-----hccchhhcccchHHH-hCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccch-
Confidence 76 556655554443333 23445677777765532 223455567889999999999876 399999998
Q ss_pred CchhHHHHhCCCCCCCceEEEEeccCCccccCCCC---CCHHHHHHHHHHH
Q 014216 338 KQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSA---FELEHIVEFVKEA 385 (428)
Q Consensus 338 ~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~---~~~~~i~~fi~~~ 385 (428)
.++++++-+.....|.+++++...+.|+....+ .+.++|.+||++-
T Consensus 302 --nD~~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFient 350 (468)
T KOG4277|consen 302 --NDLANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENT 350 (468)
T ss_pred --hHHHHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhcc
Confidence 455566655555579999999888888654432 7889999999983
No 5
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.4e-28 Score=230.76 Aligned_cols=236 Identities=45% Similarity=0.871 Sum_probs=201.3
Q ss_pred CCCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEE
Q 014216 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~ 107 (428)
.......++...|...+...+.+++|+||++||++|+++.|.|.+++..+.+.+.++.|||+.+..+|++|+|+++||+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~ 106 (383)
T KOG0191|consen 27 ASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLK 106 (383)
T ss_pred cccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEE
Confidence 33444444556666567778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-CcEEeCccchHHHHhhcCCeEEEEEE
Q 014216 108 VFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSN-ESIELNSSNFDELVLKSKDLWIVEFF 186 (428)
Q Consensus 108 ~~~~g~~~~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~~v~f~ 186 (428)
+|.+|..+..|.|..+.+.+..|+.+.+....... .. .+..++..++.......+..++|.||
T Consensus 107 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~ 170 (383)
T KOG0191|consen 107 VFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKL----------------VEGEVFELTKDNFDETVKDSDADWLVEFY 170 (383)
T ss_pred EEcCCCceeeccCcccHHHHHHHHHHhhccccccc----------------cCCceEEccccchhhhhhccCcceEEEEe
Confidence 99999668899999999999999988875444332 33 48999999999988888899999999
Q ss_pred CCCChhHhhHHHHHHHHHHHhc--CCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 014216 187 APWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE 264 (428)
Q Consensus 187 ~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (428)
+|||++|+.+.+.|.+++..+. ..+.++.+||+....++.+++++.+|++.+|..+.+....|.|..+.+.|..|+.+
T Consensus 171 aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 171 APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEK 250 (383)
T ss_pred ccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHh
Confidence 9999999999999999999996 46999999999889999999999999999998665436777899999999999998
Q ss_pred HHhhcCCCCcceecC
Q 014216 265 QLETNVAPPEVTELT 279 (428)
Q Consensus 265 ~~~~~~~~~~v~~l~ 279 (428)
....+...+.+.+..
T Consensus 251 ~~~~~~~~~~~~~~~ 265 (383)
T KOG0191|consen 251 KERRNIPEPELKEIE 265 (383)
T ss_pred hcCCCCCCccccccc
Confidence 865542233343333
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.96 E-value=1.8e-26 Score=201.13 Aligned_cols=323 Identities=21% Similarity=0.344 Sum_probs=228.0
Q ss_pred ccCCCCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhh-----hhH-HHHHHHHHhcC-ceEEEEEcCcccHhHHHH
Q 014216 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQA-----LTP-IWEKAATVLKG-VATVAALDANEHQSLAQE 97 (428)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~-----~~~-~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~ 97 (428)
.+.....+++|+..||. .+.++.+..+|+||.+--..-.. +.. .++-+|+-+.. .+.|+.||..++..++++
T Consensus 29 ~YDGkDRVi~LneKNfk-~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKK 107 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFK-RALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKK 107 (383)
T ss_dssp S-SSS--CEEE-TTTHH-HHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHH
T ss_pred cCCCccceEEcchhHHH-HHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHh
Confidence 45567889999999999 56677888888888776322111 112 44455555554 499999999999999999
Q ss_pred cCCccccEEEEEeCCCCCccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhh-
Q 014216 98 YGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK- 176 (428)
Q Consensus 98 ~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~- 176 (428)
+|+...+++.+|++|+ +..|.|.++++.+..||...+ ..+|..++.+.-.+.+.+
T Consensus 108 Lgv~E~~SiyVfkd~~-~IEydG~~saDtLVeFl~dl~-----------------------edPVeiIn~~~e~~~Fe~i 163 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGE-VIEYDGERSADTLVEFLLDLL-----------------------EDPVEIINNKHELKAFERI 163 (383)
T ss_dssp HT--STTEEEEEETTE-EEEE-S--SHHHHHHHHHHHH-----------------------SSSEEEE-SHHHHHHHHH-
T ss_pred cCccccCcEEEEECCc-EEEecCccCHHHHHHHHHHhc-----------------------ccchhhhcChhhhhhhhhc
Confidence 9999999999999997 488999999999999999987 466888887666665544
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCC-CCH
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTA 255 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~ 255 (428)
...+.+|.|+.+.- ..-...|..+|+.|+..+.|+.+ .++.++++++++ ...+-+|++-.+.|+...|. .+.
T Consensus 164 ed~~klIGyFk~~~---s~~yk~FeeAAe~F~p~IkFfAt---fd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 164 EDDIKLIGYFKSED---SEHYKEFEEAAEHFQPYIKFFAT---FDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp -SS-EEEEE-SSTT---SHHHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred ccceeEEEEeCCCC---cHHHHHHHHHHHhhcCceeEEEE---ecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 34688999887632 34788899999999999999985 689999999997 78899998877778888775 678
Q ss_pred HHHHHHHHHHHhhcCCCCcceecCchhhhhhhcCC-CCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCc-ceEEE
Q 014216 256 GAIESFALEQLETNVAPPEVTELTSQDVMEEKCGS-AAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGH-YSFVW 333 (428)
Q Consensus 256 ~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~f~~ 333 (428)
++|.+||.+| +.|.+++++..+.++.|... ....+++|.+... ..--++++.++++|....+.+ +.++|
T Consensus 237 ~e~~~fi~~h-----~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~d----pdG~efleilk~va~~nt~np~Lsivw 307 (383)
T PF01216_consen 237 EELVEFIEEH-----KRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEED----PDGFEFLEILKQVARDNTDNPDLSIVW 307 (383)
T ss_dssp HHHHHHHHHT------S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTS----HHHHHHHHHHHHHHHHCTT-TT--EEE
T ss_pred HHHHHHHHHh-----chhHhhhCChhhhhhhhcccCCCceEEEEecCCC----CchHHHHHHHHHHHHhcCcCCceeEEE
Confidence 9999999999 78999999999999999853 5688889986633 333468899999999998875 99999
Q ss_pred ecCCCchhH----HHHhCCCCCCCceEEEEeccCCc--cccCCC---CCCHHHHHHHHHHHhcCC
Q 014216 334 AAAGKQPDL----ENRVGVGGYGYPALVALNVKKGV--YTPLKS---AFELEHIVEFVKEAGRGG 389 (428)
Q Consensus 334 id~~~~~~~----~~~~gl~~~~~P~~~i~~~~~~~--~~~~~~---~~~~~~i~~fi~~~~~g~ 389 (428)
||....|-+ -+.||+.- .-|.|.+.+..... |..+++ .-|.++|+.||+++++|+
T Consensus 308 IDPD~fPllv~yWE~tF~Idl-~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~ 371 (383)
T PF01216_consen 308 IDPDDFPLLVPYWEKTFGIDL-SRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGK 371 (383)
T ss_dssp E-GGG-HHHHHHHHHHHTT-T-TS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTC
T ss_pred ECCCCCchhHHHHHhhcCccc-cCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCC
Confidence 999887754 45678875 35999999987655 443432 258899999999999996
No 7
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.96 E-value=1.9e-26 Score=196.67 Aligned_cols=310 Identities=22% Similarity=0.313 Sum_probs=217.5
Q ss_pred CccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhc-----CceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-----GVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 36 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-----~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
+.+|++ .++.++..++|.|||+||+.++.++|.+++++..+. +++.++.|||+++..++.+|.|..|||+.+|+
T Consensus 2 t~~N~~-~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENID-SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHH-HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456777 677889999999999999999999999999988766 57999999999999999999999999999999
Q ss_pred CCCCCc-cccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhh-cCCeEEEEEECC
Q 014216 111 PGKPPV-DYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAP 188 (428)
Q Consensus 111 ~g~~~~-~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~ 188 (428)
+|.... .|.|.++++++.+||.+++.. ++.+..+.+..+.... +++.++.+|-..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~-----------------------~i~Ef~sl~~l~n~~~p~K~~vIgyF~~k 137 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSD-----------------------PINEFESLDQLQNLDIPSKRTVIGYFPSK 137 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhcc-----------------------HHHHHHhHHHHHhhhccccceEEEEeccC
Confidence 998744 899999999999999999743 3444444333333333 344455555533
Q ss_pred CChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCC-CCcccccCCC-CHHHHHHHHHHHH
Q 014216 189 WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK-DSPIPYEGAR-TAGAIESFALEQL 266 (428)
Q Consensus 189 ~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~-~~~~~y~g~~-~~~~i~~fi~~~~ 266 (428)
. ......+.++|..+++...|..-- .++.....-.+.+ +++|+++. .....|.|.+ +.+.+..||.+.
T Consensus 138 d----spey~~~~kva~~lr~dc~f~V~~----gD~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK- 207 (375)
T KOG0912|consen 138 D----SPEYDNLRKVASLLRDDCVFLVGF----GDLLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK- 207 (375)
T ss_pred C----CchHHHHHHHHHHHhhccEEEeec----cccccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc-
Confidence 2 446778899999999874444210 1111111111222 45554332 2223699987 568999999888
Q ss_pred hhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCc--ceEEEecCCCchhHHH
Q 014216 267 ETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGH--YSFVWAAAGKQPDLEN 344 (428)
Q Consensus 267 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~f~~id~~~~~~~~~ 344 (428)
..|.|.++|-++..+... ...+.+|+|-.. +........-..+++..-+.+ ++|...|+.....-+.
T Consensus 208 ----cvpLVREiTFeN~EELtE-EGlPflILf~~k------dD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~ 276 (375)
T KOG0912|consen 208 ----CVPLVREITFENAEELTE-EGLPFLILFRKK------DDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLR 276 (375)
T ss_pred ----chhhhhhhhhccHHHHhh-cCCceEEEEecC------CcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHH
Confidence 579999999888655443 344555655332 122222233334555555443 8999999999999999
Q ss_pred HhCCCCCCCceEEEEeccCCcccc-CCCCCCHHHHHHHHHHHhcCCC
Q 014216 345 RVGVGGYGYPALVALNVKKGVYTP-LKSAFELEHIVEFVKEAGRGGK 390 (428)
Q Consensus 345 ~~gl~~~~~P~~~i~~~~~~~~~~-~~~~~~~~~i~~fi~~~~~g~~ 390 (428)
.+|-+..++|.|+|=........+ +.+-..+..|.+|+.+..+|+.
T Consensus 277 HlgKs~~DLPviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~sgkl 323 (375)
T KOG0912|consen 277 HLGKSPDDLPVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLHSGKL 323 (375)
T ss_pred HhCCCcccCcEEEeeccceeeecCchhhhcCccHHHHHHHHHhCchh
Confidence 999998899999765443332211 2334667899999999999974
No 8
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.94 E-value=2.6e-25 Score=193.81 Aligned_cols=191 Identities=20% Similarity=0.295 Sum_probs=153.6
Q ss_pred CCCeEEEEEEC---CCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCC-ccccCC
Q 014216 47 ANGVVLVEFYA---PWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP-VDYQGA 121 (428)
Q Consensus 47 ~~~~~lv~f~~---~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~-~~~~g~ 121 (428)
++...++.|++ +||++|+.+.|.+++++..+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45666777888 9999999999999999999864 356777777799999999999999999999999876 489999
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcC-CeEEEEEECCCChhHhhHHHHH
Q 014216 122 RDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEW 200 (428)
Q Consensus 122 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~ 200 (428)
.+.+.+..|+...+.. ......++.+....+ ...+ ...++.|+++||++|+.+.+.+
T Consensus 98 ~~~~~l~~~i~~~~~~---------------------~~~~~~L~~~~~~~l-~~~~~pv~I~~F~a~~C~~C~~~~~~l 155 (215)
T TIGR02187 98 PAGYEFAALIEDIVRV---------------------SQGEPGLSEKTVELL-QSLDEPVRIEVFVTPTCPYCPYAVLMA 155 (215)
T ss_pred CCHHHHHHHHHHHHHh---------------------cCCCCCCCHHHHHHH-HhcCCCcEEEEEECCCCCCcHHHHHHH
Confidence 9999999999876421 111224444333333 2333 4456669999999999999999
Q ss_pred HHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 014216 201 KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE 264 (428)
Q Consensus 201 ~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (428)
++++... +.+.+..+|.+.+++++++|+|.++|++++++.+. .+.|....+++.+|+.+
T Consensus 156 ~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 156 HKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 9999884 57999999999999999999999999999986432 27898889999998864
No 9
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.2e-21 Score=180.33 Aligned_cols=213 Identities=30% Similarity=0.554 Sum_probs=180.4
Q ss_pred CCCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCchhHhhhcCCCcCc
Q 014216 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFP 234 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~~~~~v~~~P 234 (428)
....|..|+..+|...+ ..+..++|.||+|||++|+.++|.|.++|..+.. .+..+.|||+.+.++|.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 46789999999999986 7788899999999999999999999999999977 4999999999999999999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHHHHHHhhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHH
Q 014216 235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYL 314 (428)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~ 314 (428)
++.+|++|.. +..|.|..+.+.|..|+.+. +.|.+..+.+....+.+.......||.|+.+..+..
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq-----~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-------- 167 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQ-----SGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA-------- 167 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHHhc-----cCCCceecccHHHHHhhccCCceEEEEEecccccch--------
Confidence 9999996653 79999999999999999888 568889999999999888888899999987632221
Q ss_pred HHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHHHHHhcCC
Q 014216 315 EMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGG 389 (428)
Q Consensus 315 ~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~ 389 (428)
+.+...|...++. +.|+. ....++.+.++++....|.+.+++........|++.++.+.|.+||.....+-
T Consensus 168 ~~~~~~a~~l~~d-~~F~~---ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~pl 238 (493)
T KOG0190|consen 168 ESFFDAASKLRDD-YKFAH---TSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPL 238 (493)
T ss_pred HHHHHHHHhcccc-ceeec---cCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccc
Confidence 4555667777777 88883 35688999999875445667788777777777799999999999999885543
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=5.5e-22 Score=152.50 Aligned_cols=107 Identities=22% Similarity=0.415 Sum_probs=97.5
Q ss_pred ccCCCCCcEEeCccchHHH--hhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHH-HHcCCc
Q 014216 25 LYGSSSPVVQLTPNNFKSK--VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA-QEYGIR 101 (428)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~-~~~~v~ 101 (428)
.+++...++++++++|+.. +..++++++|.||++||++|+.+.|.++++++.+++.+.|+.|||+++..+| ++|+|.
T Consensus 4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 4556788999999999954 2578999999999999999999999999999999988999999999999999 589999
Q ss_pred cccEEEEEeCCCCCccccCCCCcchHHHHH
Q 014216 102 GFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 102 ~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
++||+.+|++|+...+|.|.++.+.|..|+
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999998889999999999998773
No 11
>PTZ00102 disulphide isomerase; Provisional
Probab=99.87 E-value=7.7e-21 Score=187.30 Aligned_cols=224 Identities=22% Similarity=0.403 Sum_probs=177.0
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHh-HHHHcCCccccEEEEEe
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS-LAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~P~~~~~~ 110 (428)
+..++.+++. ....++.+.++.+ ..|.....+.+.+.++++.+++++.|+.+|+++.+. +++.+|+..+|++++..
T Consensus 234 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~ 310 (477)
T PTZ00102 234 FAEINAENYR-RYISSGKDLVWFC--GTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQS 310 (477)
T ss_pred eeecCccchH-HHhcCCccEEEEe--cCHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEEc
Confidence 4567777776 4555555444333 356677788999999999999999999999998886 89999999999987775
Q ss_pred CCCCCccccC----CCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCCCCcEEeCccchHHHHhhcCCeEEEE
Q 014216 111 PGKPPVDYQG----ARDVKPIAEFALQQIKALLKERLSGKATGGSSD--KSKSDSNESIELNSSNFDELVLKSKDLWIVE 184 (428)
Q Consensus 111 ~g~~~~~~~g----~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~ 184 (428)
.+.. ..+.+ ..+.+.|.+|+...+. ++......+ .+......+..++..++.+.+.+.+++++|.
T Consensus 311 ~~~~-y~~~~~~~~~~~~~~l~~Fv~~~~~--------gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~ 381 (477)
T PTZ00102 311 PAGR-YLLPPAKESFDSVEALIEFFKDVEA--------GKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLE 381 (477)
T ss_pred CCcc-cCCCccccccCCHHHHHHHHHHHhC--------CCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEE
Confidence 3332 22333 2567788888876653 333221111 1223356799999999999877888899999
Q ss_pred EECCCChhHhhHHHHHHHHHHHhcC--CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 014216 185 FFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
||++||++|+.+.+.|.++|+.+++ .+.|+.+|++.++..+++++++++|++++|+.++..+..|.|..+.+.|.+|+
T Consensus 382 f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i 461 (477)
T PTZ00102 382 IYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFV 461 (477)
T ss_pred EECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHH
Confidence 9999999999999999999999875 59999999999999999999999999999987776667899999999999999
Q ss_pred HHHHh
Q 014216 263 LEQLE 267 (428)
Q Consensus 263 ~~~~~ 267 (428)
.++..
T Consensus 462 ~~~~~ 466 (477)
T PTZ00102 462 NKHAT 466 (477)
T ss_pred HHcCC
Confidence 99863
No 12
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.9e-21 Score=151.53 Aligned_cols=105 Identities=30% Similarity=0.545 Sum_probs=100.4
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
.+..++..+|+.++++++.||+|.|||+||++|+.+.|.+++++.++.|++.++.||.|++.+++.+|+|..+|++++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcchHHHHHHHHH
Q 014216 111 PGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
+|+...++.|..+.+.+..+|.+.+
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHh
Confidence 9999889999999999999999876
No 13
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=162.60 Aligned_cols=108 Identities=39% Similarity=0.738 Sum_probs=97.4
Q ss_pred CCCcEEeCccchHHHhhcC----CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCcccc
Q 014216 29 SSPVVQLTPNNFKSKVLNA----NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP 104 (428)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 104 (428)
...+.++++++|++.+... +++++|+||++||++|+++.|.|+++++.+++.+.++.+||+++++++++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 4679999999999655432 579999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCccccCCCCcchHHHHHHHHHH
Q 014216 105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136 (428)
Q Consensus 105 ~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~ 136 (428)
++++|.+|+.+..+.|.++.+.+.+|+.+..+
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 99999999876666788999999999988764
No 14
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=8.8e-21 Score=145.07 Aligned_cols=99 Identities=30% Similarity=0.730 Sum_probs=91.8
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
.+.+++.++|+..+ .++++++|.||++||++|+++.|.|.++++.+++.+.|+.|||++++.+|++++|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 46789999999544 66799999999999999999999999999999998999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcchHHHH
Q 014216 111 PGKPPVDYQGARDVKPIAEF 130 (428)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~ 130 (428)
+|+.+.+|.|.++.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99888899999999988776
No 15
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.84 E-value=3.5e-19 Score=175.11 Aligned_cols=223 Identities=26% Similarity=0.478 Sum_probs=175.2
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCc--cccEE
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFY--APWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIR--GFPTI 106 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~--~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~--~~P~~ 106 (428)
+..++..++. .+...+ +.++.|+ ......|+.+...+.++++.+.+ .+.|+.+|+.+.+.+++.+|+. .+|++
T Consensus 219 v~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~ 296 (462)
T TIGR01130 219 VGEFTQETAA-KYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAV 296 (462)
T ss_pred eEeeCCcchh-hHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceE
Confidence 4556666666 444443 5444444 44566689999999999999997 8999999999999999999998 79999
Q ss_pred EEEeCCC-CCccccC-CCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCCcEEeCccchHHHHhhcCCeEE
Q 014216 107 KVFVPGK-PPVDYQG-ARDVKPIAEFALQQIKALLKERLSGKATGGSSDK--SKSDSNESIELNSSNFDELVLKSKDLWI 182 (428)
Q Consensus 107 ~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~~~~~~~ 182 (428)
+++.... ....+.+ ..+.+.|.+|+.+.+ .|+.+....+. +......+..+...++.+.+.+.++.++
T Consensus 297 vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~--------~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vl 368 (462)
T TIGR01130 297 AIQDLEGNKKYPMDQEEFSSENLEAFVKDFL--------DGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVL 368 (462)
T ss_pred EEEeCCcccccCCCcCCCCHHHHHHHHHHHh--------cCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEE
Confidence 9986543 2344444 677888888888764 34433322222 1223557889999999999877888999
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCC-CcccccCCCCHHHH
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAI 258 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~~~~~i 258 (428)
|.||++||++|+.+.+.|.++++.+++ .+.|+.+||+.+. +.. +++.++|++++|+.++. .+..|.|..+.+.|
T Consensus 369 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l 446 (462)
T TIGR01130 369 VEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDF 446 (462)
T ss_pred EEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHH
Confidence 999999999999999999999999988 7999999998765 334 99999999999987665 46789999999999
Q ss_pred HHHHHHHH
Q 014216 259 ESFALEQL 266 (428)
Q Consensus 259 ~~fi~~~~ 266 (428)
..|+.++.
T Consensus 447 ~~~l~~~~ 454 (462)
T TIGR01130 447 SKFIAKHA 454 (462)
T ss_pred HHHHHhcC
Confidence 99998885
No 16
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=1.6e-20 Score=144.60 Aligned_cols=101 Identities=43% Similarity=0.736 Sum_probs=92.9
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
.+.+++.++|+..+.+++++++|.||++||++|+++.|.|.++++.+.+.+.|+.+||++++++|++++|+++|++++|.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 46788999999777777889999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-CCCccccCCCC-cchHHHHH
Q 014216 111 PG-KPPVDYQGARD-VKPIAEFA 131 (428)
Q Consensus 111 ~g-~~~~~~~g~~~-~~~l~~~i 131 (428)
+| +.+.+|.|..+ .++|..|+
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 88 77889999987 88888774
No 17
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=3.3e-20 Score=142.76 Aligned_cols=103 Identities=37% Similarity=0.696 Sum_probs=96.6
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeC
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~ 111 (428)
|..+++++|++.+.+++++++|+||++||++|+.+.|.|.++++.+.+.+.|+.|||++++.+|++|+|.++|++++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 46899999996665558999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCccccCCCCcchHHHHHHHH
Q 014216 112 GKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 112 g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
|+...+|.|.++.+.|.+||.++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99888999999999999999864
No 18
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.83 E-value=1.1e-19 Score=143.76 Aligned_cols=129 Identities=48% Similarity=0.901 Sum_probs=120.0
Q ss_pred CcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCC
Q 014216 273 PEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYG 352 (428)
Q Consensus 273 ~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~ 352 (428)
|.+.++++++.+...|..+++|+|+|+++..+...+.++.+++.++.+|++|+++++.|+|+|...+..+.+.||++...
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 67889999999999998889999999999888888888999999999999999999999999999999999999998778
Q ss_pred CceEEEEeccCCccccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 014216 353 YPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSI 401 (428)
Q Consensus 353 ~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~~~~~~p~~ 401 (428)
+|++++++..+++|..+++++|.++|.+|++++++|+....|+.++|++
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p~~ 130 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGPTLPVNGLPKV 130 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcccccCCCCCCC
Confidence 9999999998778877999999999999999999999999999999864
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.82 E-value=5.6e-20 Score=142.13 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=97.7
Q ss_pred CCCCCcEEeCccchHHHhhcCCCeEEEEEECCCChh--hh--hhhHHHHHHHHHh--cCceEEEEEcCcccHhHHHHcCC
Q 014216 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH--CQ--ALTPIWEKAATVL--KGVATVAALDANEHQSLAQEYGI 100 (428)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~--C~--~~~~~~~~~~~~~--~~~v~~~~vd~~~~~~l~~~~~v 100 (428)
.....+..+|++||++.+.+++.++++.||+.||++ |+ .+.|.+.+++.++ .+++.|+.||++++++++++|||
T Consensus 6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 445678999999999888888889999999999976 99 8889999999888 77899999999999999999999
Q ss_pred ccccEEEEEeCCCCCccccCCCCcchHHHHHHHHH
Q 014216 101 RGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 101 ~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
+++||+++|++|+.+. |.|.++.+.|..||.+.+
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999998654 999999999999998753
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=9.3e-20 Score=141.17 Aligned_cols=100 Identities=38% Similarity=0.731 Sum_probs=90.2
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhc------CceEEEEEcCcccHhHHHHcCCcccc
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATVAALDANEHQSLAQEYGIRGFP 104 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~------~~v~~~~vd~~~~~~l~~~~~v~~~P 104 (428)
.+.+++.++|++ +++++++++|.||++||++|+++.|.|.++++.++ +++.++.|||++++++|++|+|+++|
T Consensus 2 ~v~~l~~~~f~~-~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDD-ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHH-HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 578899999994 56788999999999999999999999999998764 25899999999999999999999999
Q ss_pred EEEEEeCCCC-CccccCCCCcchHHHHH
Q 014216 105 TIKVFVPGKP-PVDYQGARDVKPIAEFA 131 (428)
Q Consensus 105 ~~~~~~~g~~-~~~~~g~~~~~~l~~~i 131 (428)
++++|++|+. ...|.|.++.+.|..||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999984 58899999999998885
No 21
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.81 E-value=5e-18 Score=145.27 Aligned_cols=177 Identities=26% Similarity=0.427 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCC-CCHHHHHHHHHHHHhhcCCC
Q 014216 194 KKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIESFALEQLETNVAP 272 (428)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~~~~~~ 272 (428)
......|.++|+.+++.+.|+.+. +.++++++++.. |++++|+..++.+..|.|. .+.+.|.+||..+ +.
T Consensus 6 ~~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~-----~~ 76 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN-----SF 76 (184)
T ss_dssp SHHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH-----SS
T ss_pred cHHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh-----cc
Confidence 567889999999999999999974 678999999998 9999999877778999998 8999999999999 57
Q ss_pred CcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCC
Q 014216 273 PEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYG 352 (428)
Q Consensus 273 ~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~ 352 (428)
|.|.+++..+.......+.++.+++|... ..+..+.+.+.++.+|++++++ +.|+++|+...+.+++.||++...
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNK----DNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETT----THHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcC----CchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCcc
Confidence 99999998876555544445566666432 2455678899999999999998 999999999889999999999888
Q ss_pred CceEEEEeccCCcc-ccCCCCCCHHHHHHHHHH
Q 014216 353 YPALVALNVKKGVY-TPLKSAFELEHIVEFVKE 384 (428)
Q Consensus 353 ~P~~~i~~~~~~~~-~~~~~~~~~~~i~~fi~~ 384 (428)
+|++++++..++.+ +.+.++++.++|.+|+++
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999999776654 456889999999999975
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.80 E-value=3.7e-19 Score=138.32 Aligned_cols=101 Identities=52% Similarity=0.973 Sum_probs=92.6
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc--cHhHHHHcCCccccEEEE
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~P~~~~ 108 (428)
++.+++.++|+..+.+.+++++|.||++||++|+++.|.+.++++.+.+.+.++.+||+. ++.+|++|+|+++|++++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 367899999997676778889999999999999999999999999999889999999998 889999999999999999
Q ss_pred EeCCC-----CCccccCCCCcchHHHHH
Q 014216 109 FVPGK-----PPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 109 ~~~g~-----~~~~~~g~~~~~~l~~~i 131 (428)
|.+|+ ....|.|.++.++|.+||
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 98886 467899999999999987
No 23
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.3e-19 Score=155.10 Aligned_cols=109 Identities=32% Similarity=0.650 Sum_probs=102.1
Q ss_pred CCCcEEeCccchHHHhhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEE
Q 014216 29 SSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106 (428)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~ 106 (428)
...+.++|..||+..++++ .+||+|+||+|||++|+.+.|.+++++..++|++.+++||||+++.++.+|||+++|++
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 3459999999999888764 45999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCccccCCCCcchHHHHHHHHHHH
Q 014216 107 KVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137 (428)
Q Consensus 107 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~~ 137 (428)
+.|.+|+.+-.|.|....+.+.+|+.+.++.
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999999999999998754
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=6.4e-19 Score=136.79 Aligned_cols=107 Identities=36% Similarity=0.707 Sum_probs=98.8
Q ss_pred CCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEE
Q 014216 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~ 108 (428)
++.+.+++.++|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+.+++.++.+|+++++.++++|+++++|++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 46788999999997777778999999999999999999999999999999889999999999999999999999999999
Q ss_pred EeCCCCCccccCCCCcchHHHHHHHHH
Q 014216 109 FVPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 109 ~~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
|.+|+...++.|..+.+.+..++.+.+
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999988888899999999999988764
No 25
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.79 E-value=1.3e-18 Score=133.72 Aligned_cols=103 Identities=19% Similarity=0.386 Sum_probs=93.6
Q ss_pred CCCCcEEeCccchHHHH--hhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHh-hhcCCCcCc
Q 014216 158 DSNESIELNSSNFDELV--LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM-SKFNVQGFP 234 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~--~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~-~~~~v~~~P 234 (428)
..++|+++++.+|.+.. ...+++++|.||++||++|+.+.+.|.++|+.+++.+.|+.|||+.+..+| ++|+|+++|
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~P 86 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFP 86 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccC
Confidence 46789999999999863 467889999999999999999999999999999988999999999999999 589999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHH
Q 014216 235 TILVFGADKDSPIPYEGARTAGAIESF 261 (428)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (428)
++++|+++ +.+..|.|..+.+.|..|
T Consensus 87 Tl~lf~~g-~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 87 VIHLYYRS-RGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEEEECC-ccceEEeCCCCHHHHHhh
Confidence 99999854 457899999999999887
No 26
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.78 E-value=1.7e-18 Score=133.26 Aligned_cols=103 Identities=43% Similarity=0.829 Sum_probs=94.5
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
+.+.+++..++.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.|||+.++++|++++|+++|++++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 35778999999998877778999999999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCCCcccccCCCC-HHHHHHHH
Q 014216 240 GADKDSPIPYEGART-AGAIESFA 262 (428)
Q Consensus 240 ~~~~~~~~~y~g~~~-~~~i~~fi 262 (428)
+.+++....|.|..+ .++|..|+
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 877677899999987 99998874
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=6.8e-19 Score=136.50 Aligned_cols=101 Identities=18% Similarity=0.420 Sum_probs=90.3
Q ss_pred EEeCccchHHHhhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCccccEEEEE
Q 014216 33 VQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (428)
Q Consensus 33 ~~l~~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~ 109 (428)
..++.++|.+.++. .+++++|.||++||++|+.+.|.|.++++.+++ ++.++.|||++++.++++++|+++|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 35677888866653 579999999999999999999999999999986 589999999999999999999999999999
Q ss_pred eCCCCCccccCCCCcchHHHHHHH
Q 014216 110 VPGKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 110 ~~g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
++|+.+.++.|..+.+.+.+||.+
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999877788999999999988864
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.78 E-value=1.8e-18 Score=133.02 Aligned_cols=100 Identities=63% Similarity=1.095 Sum_probs=91.7
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeC
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~ 111 (428)
+.++++++|...+.+.+++++|+||++||++|+++.|.|.++++.+.+.+.++.+||+++++++++++|+++|++++|.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 57889999997666667789999999999999999999999999999889999999999999999999999999999998
Q ss_pred C-CCCccccCCCCcchHHHHH
Q 014216 112 G-KPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 112 g-~~~~~~~g~~~~~~l~~~i 131 (428)
| .....|.|.++.++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 4477899999999999986
No 29
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.78 E-value=1.9e-18 Score=130.92 Aligned_cols=93 Identities=26% Similarity=0.549 Sum_probs=85.2
Q ss_pred chHHHhhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCcc
Q 014216 39 NFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVD 117 (428)
Q Consensus 39 ~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~ 117 (428)
+|++.+.+. +++++|.||++||++|+++.|.+.+++..+.+.+.++.+|+++++.++++|+|.++|++++|.+|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566566544 6799999999999999999999999999999889999999999999999999999999999999988888
Q ss_pred ccCCCCcchHHHHH
Q 014216 118 YQGARDVKPIAEFA 131 (428)
Q Consensus 118 ~~g~~~~~~l~~~i 131 (428)
+.|..+.+.|..|+
T Consensus 82 ~~g~~~~~~l~~~l 95 (96)
T cd02956 82 FQGAQPEEQLRQML 95 (96)
T ss_pred ecCCCCHHHHHHHh
Confidence 99999999998886
No 30
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.77 E-value=2.1e-18 Score=132.00 Aligned_cols=98 Identities=36% Similarity=0.598 Sum_probs=87.6
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCccccEEEEE
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~ 109 (428)
.+.+++.++|++ +++ + .++|.||++||++|+++.|.|.+++..+++ ++.++.+||++++.++++|+|.++|+++++
T Consensus 2 ~v~~l~~~~f~~-~~~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTL-VLE-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHH-HhC-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 477899999995 443 3 389999999999999999999999998765 599999999999999999999999999999
Q ss_pred eCCCCCccccCCCCcchHHHHHH
Q 014216 110 VPGKPPVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 110 ~~g~~~~~~~g~~~~~~l~~~i~ 132 (428)
++|+ +.+|.|.++.+.|..|+.
T Consensus 79 ~~g~-~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 79 KDGV-FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred CCCC-EEEecCCCCHHHHHHHHh
Confidence 9887 478999999999999885
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=2.6e-18 Score=131.87 Aligned_cols=98 Identities=38% Similarity=0.887 Sum_probs=88.4
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCcccHhHHHHcCCccccEEEE
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~P~~~~ 108 (428)
+.++++++|+..+ . +++++|.||++||++|+.+.|.|.++++.+++ .+.++.+||+++..+|++++|.++|++++
T Consensus 2 ~~~l~~~~f~~~~-~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHI-A-EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHh-h-cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 5688999999555 3 34699999999999999999999999999987 68999999999999999999999999999
Q ss_pred EeCCCCCccccCCCCcchHHHHH
Q 014216 109 FVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 109 ~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
|++|+.+.+|.|.++.+.|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99998888999999999888774
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.76 E-value=2.5e-18 Score=130.57 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=80.8
Q ss_pred cchHHHhhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCc
Q 014216 38 NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPV 116 (428)
Q Consensus 38 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~ 116 (428)
++|+..+.. .+++++|.|||+||++|+.+.|.+++++.++++.+.|+.||++++++++++|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 456645443 5789999999999999999999999999999998899999999999999999999999999999999888
Q ss_pred cccCCCCcchHHH
Q 014216 117 DYQGARDVKPIAE 129 (428)
Q Consensus 117 ~~~g~~~~~~l~~ 129 (428)
+..|..+...+..
T Consensus 83 ~~~G~~~~~~~~~ 95 (114)
T cd02954 83 IDLGTGNNNKINW 95 (114)
T ss_pred EEcCCCCCceEEE
Confidence 8888776655533
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.76 E-value=3.9e-18 Score=137.93 Aligned_cols=97 Identities=20% Similarity=0.418 Sum_probs=85.3
Q ss_pred cccCCCCCcEEeCccchHHHhhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCc
Q 014216 24 ALYGSSSPVVQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIR 101 (428)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~ 101 (428)
..+.....+.+++.++|++.+.. .+++++|+||++||++|+++.|.++++++.+++ .+.|+.||++++++++++++|.
T Consensus 22 ~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~ 101 (152)
T cd02962 22 PLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS 101 (152)
T ss_pred CccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce
Confidence 34445678899999999965543 357999999999999999999999999999875 5999999999999999999998
Q ss_pred c------ccEEEEEeCCCCCccccC
Q 014216 102 G------FPTIKVFVPGKPPVDYQG 120 (428)
Q Consensus 102 ~------~P~~~~~~~g~~~~~~~g 120 (428)
+ +||+++|++|+.+.++.|
T Consensus 102 ~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 102 TSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred ecCCcCCCCEEEEEECCEEEEEEec
Confidence 8 999999999998888877
No 34
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=1.1e-17 Score=127.80 Aligned_cols=101 Identities=33% Similarity=0.803 Sum_probs=91.4
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
+.+++++..+|...+ ...++++|.||++||++|+.+.+.|.++|+.+++.+.|+.|||+.++.+|++++|+++|++++|
T Consensus 1 ~~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 1 PEIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred CCeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 357889999999877 5568999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHH
Q 014216 240 GADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
+.+ .....|.|..+.+.|.+|+
T Consensus 80 ~~g-~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 80 PSG-MNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCC-CCcccCCCCCCHHHHHhhC
Confidence 755 4578899999999998873
No 35
>PHA02278 thioredoxin-like protein
Probab=99.76 E-value=3.4e-18 Score=129.25 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=80.8
Q ss_pred cchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc----HhHHHHcCCccccEEEEEeCCC
Q 014216 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGIRGFPTIKVFVPGK 113 (428)
Q Consensus 38 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~P~~~~~~~g~ 113 (428)
.+|. ..+.++++++|+|||+||++|+.+.|.+++++..+...+.|+.+|++.+ ++++++|+|.++||+++|++|+
T Consensus 5 ~~~~-~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 5 VDLN-TAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHH-HHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 5677 4446799999999999999999999999999988666678999999976 6899999999999999999999
Q ss_pred CCccccCCCCcchHHHH
Q 014216 114 PPVDYQGARDVKPIAEF 130 (428)
Q Consensus 114 ~~~~~~g~~~~~~l~~~ 130 (428)
.+.+..|..+.+.+.++
T Consensus 84 ~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEeCCCCHHHHHhh
Confidence 88899998888777654
No 36
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.75 E-value=1.6e-17 Score=127.71 Aligned_cols=103 Identities=36% Similarity=0.679 Sum_probs=95.4
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcC
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~ 241 (428)
|..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+.+.|+.||+++++.++++|+|.++|++++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 56789999999987668999999999999999999999999999999899999999999999999999999999999986
Q ss_pred CCCCcccccCCCCHHHHHHHHHHH
Q 014216 242 DKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
+. ....|.|..+.+.|.+||.+|
T Consensus 81 g~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GK-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TE-EEEEEESSSSHHHHHHHHHHH
T ss_pred Cc-EEEEEECCCCHHHHHHHHHcC
Confidence 65 455999999999999999876
No 37
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=7.9e-18 Score=128.29 Aligned_cols=99 Identities=26% Similarity=0.378 Sum_probs=86.7
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhcCceEEEEEcC-----cccHhHHHHcCC
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYA--PWCG---HCQALTPIWEKAATVLKGVATVAALDA-----NEHQSLAQEYGI 100 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~--~~C~---~C~~~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~l~~~~~v 100 (428)
.+++|+..+|+ .++.+++.+||.||+ |||+ +|+++.|++.+++.. +.++.||| .++.+||++|+|
T Consensus 2 g~v~L~~~nF~-~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFY-KVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHH-HHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhCC
Confidence 46789999999 567889999999999 9999 888888888776653 88999999 467899999999
Q ss_pred c--cccEEEEEeCCC--CCccccCC-CCcchHHHHHHHH
Q 014216 101 R--GFPTIKVFVPGK--PPVDYQGA-RDVKPIAEFALQQ 134 (428)
Q Consensus 101 ~--~~P~~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 134 (428)
+ ++||+.+|++|. ....|.|. ++.+.|..|+.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999985 46789997 9999999999764
No 38
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=1e-17 Score=135.06 Aligned_cols=104 Identities=27% Similarity=0.571 Sum_probs=95.8
Q ss_pred CCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEE
Q 014216 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (428)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~ 109 (428)
..+++++..+|+ .+.+++++++|.||++||++|+++.|.+.++++.+.+.+.++.+|++++++++++|+|+++|++++|
T Consensus 35 ~~~i~~~~~~~~-~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 35 GEVINATGETLD-KLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCCEEcCHHHHH-HHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 346778889999 5667789999999999999999999999999999998899999999999999999999999999999
Q ss_pred eCCCCCccccCCCCcchHHHHHHHH
Q 014216 110 VPGKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 110 ~~g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
++|+.+.++.|..+.+.+.+|+.+.
T Consensus 114 ~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 114 KNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999888899999999999999864
No 39
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.75 E-value=9.3e-18 Score=129.27 Aligned_cols=99 Identities=48% Similarity=0.887 Sum_probs=89.7
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhc--CceEEEEEcCcc--cHhHHHHcCCccccEEE
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE--HQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~~--~~~l~~~~~v~~~P~~~ 107 (428)
+..+++.+|+ ..+.++++++|.||++||++|+++.|.+.++++.+. +.+.++.+||++ ++.++++++++++|+++
T Consensus 2 ~~~l~~~~~~-~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFR-KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHH-HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5688888998 455677899999999999999999999999999987 568899999998 99999999999999999
Q ss_pred EEeCCCCCccccCCCCcchHHHHH
Q 014216 108 VFVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 108 ~~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
+|++|+.+.+|.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999998888999999999888875
No 40
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.75 E-value=1.1e-17 Score=128.77 Aligned_cols=100 Identities=44% Similarity=0.883 Sum_probs=90.0
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC--ceEEEEEcCcccHhHHHHcCCccccEEEE
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~P~~~~ 108 (428)
++.+++.++|++.+...+++++|+||++||++|+.+.|.|.++++.+++ .+.++.+||+++ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 4778999999966666678999999999999999999999999999887 589999999987 5888999999999999
Q ss_pred EeCCC--CCccccCCCCcchHHHHH
Q 014216 109 FVPGK--PPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 109 ~~~g~--~~~~~~g~~~~~~l~~~i 131 (428)
|.+|+ ...+|.|..+...|.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 99887 578899999999998885
No 41
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.74 E-value=1e-17 Score=128.52 Aligned_cols=99 Identities=52% Similarity=0.957 Sum_probs=89.9
Q ss_pred eCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC--ceEEEEEcCcccHhHHHHcCCccccEEEEEeCC
Q 014216 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKVFVPG 112 (428)
Q Consensus 35 l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g 112 (428)
|++++|+ .++.++++++|+||++||++|+.+.+.|.+++..+++ .+.++.+||++++.++++|+++++|++++|.+|
T Consensus 1 l~~~~~~-~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFD-DIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHH-HHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4667888 4445899999999999999999999999999999987 699999999999999999999999999999988
Q ss_pred CCCccccCCCCcchHHHHHHHH
Q 014216 113 KPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
+.+..|.|..+.+.|..||.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 7678999999999999999764
No 42
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=7.5e-18 Score=127.72 Aligned_cols=84 Identities=31% Similarity=0.626 Sum_probs=78.1
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc-ccHhHHHHcCCccccEEEEEeCCCCCccccCCCCc
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV 124 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~ 124 (428)
.++++++|.||++||++|+++.|.|+++++.+++ +.++.||++ +++.++++|+|.++||+++|++| .+.+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 4689999999999999999999999999999876 788999999 88999999999999999999998 77899999999
Q ss_pred chHHHHH
Q 014216 125 KPIAEFA 131 (428)
Q Consensus 125 ~~l~~~i 131 (428)
+.|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9998875
No 43
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.74 E-value=1e-16 Score=137.47 Aligned_cols=199 Identities=23% Similarity=0.436 Sum_probs=150.1
Q ss_pred CccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-----CeEEEEEeCCCchhHhhhcCCCcCcEEEEEc
Q 014216 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-----KVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (428)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-----~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~ 240 (428)
+.+++...+ .++..++|.||++||+.++.+.|.|.++|..++. ++.+|.|||+....++.+|.|..|||+.+|+
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 345556554 6688999999999999999999999999988854 6999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhhcCCCCcceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHH
Q 014216 241 ADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSV 320 (428)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~ 320 (428)
+|.-..-.|.|..+.+.+.+||.+.+. ..+.++.+.++++......+-.+|+++++.... ++ +.++++
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s-----~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdsp------ey-~~~~kv 148 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLS-----DPINEFESLDQLQNLDIPSKRTVIGYFPSKDSP------EY-DNLRKV 148 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhc-----cHHHHHHhHHHHHhhhccccceEEEEeccCCCc------hH-HHHHHH
Confidence 776555589999999999999999873 448888888888887776666788888652222 22 678899
Q ss_pred HHHhhcCcceEEEecCCCchhHHHHhCCCCCCCceEEEEeccCCcc-ccCCCCC-CHHHHHHHHHHH
Q 014216 321 AEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVY-TPLKSAF-ELEHIVEFVKEA 385 (428)
Q Consensus 321 a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~-~~~~~~~-~~~~i~~fi~~~ 385 (428)
|.-+++. ..|...-++.. . .....+.+ ++++++..... ..|.|.+ +.+.|.+||.+-
T Consensus 149 a~~lr~d-c~f~V~~gD~~----~--~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK 207 (375)
T KOG0912|consen 149 ASLLRDD-CVFLVGFGDLL----K--PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK 207 (375)
T ss_pred HHHHhhc-cEEEeeccccc----c--CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence 9999988 77664432111 0 11111233 45666654333 2577765 558999999764
No 44
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.74 E-value=1.8e-17 Score=128.25 Aligned_cols=101 Identities=34% Similarity=0.634 Sum_probs=87.3
Q ss_pred CcEEeCccchHHHhh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc-eEEEEEcCcc-cHhHHHH-cCCccccE
Q 014216 31 PVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE-HQSLAQE-YGIRGFPT 105 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~-~~~l~~~-~~v~~~P~ 105 (428)
.+.+++.++|+..+. +++++++|.||++||++|+++.|.|.++++.+++. +.++.|||+. +..+|++ ++++++|+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 467899999996553 35789999999999999999999999999999874 8999999997 5788875 99999999
Q ss_pred EEEEeCCC-CCccccCC-CCcchHHHHH
Q 014216 106 IKVFVPGK-PPVDYQGA-RDVKPIAEFA 131 (428)
Q Consensus 106 ~~~~~~g~-~~~~~~g~-~~~~~l~~~i 131 (428)
+++|.+|. ....|.|. ++.++|..|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99997764 47889995 8999998885
No 45
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.73 E-value=3.7e-17 Score=126.52 Aligned_cols=101 Identities=34% Similarity=0.707 Sum_probs=90.2
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhc------CCeEEEEEeCCCchhHhhhcCCCcCc
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK------GKVKLGHVDCDSEKSLMSKFNVQGFP 234 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~------~~~~f~~v~~~~~~~~~~~~~v~~~P 234 (428)
.+++++.+++.+.+ +.+++++|.||++||++|+.+.+.|.++++.++ +.+.|+.|||+.+.+++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 57889999999876 677899999999999999999999999998863 25899999999999999999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHH
Q 014216 235 TILVFGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
++++|+.+......|.|..+.+.|.+|+
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999987654568899999999999885
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=2.7e-17 Score=126.96 Aligned_cols=100 Identities=48% Similarity=0.927 Sum_probs=89.0
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhc--CceEEEEEcCcc-cHhHHHHcCCccccEEEE
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE-HQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~~-~~~l~~~~~v~~~P~~~~ 108 (428)
+.+++..+|+..+...+++++|+||++||++|+++.|.|.++++.++ +.+.++.+||++ ++.+|++++|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56888899996554456699999999999999999999999999987 469999999999 999999999999999999
Q ss_pred EeCC-CCCccccCCCCcchHHHHH
Q 014216 109 FVPG-KPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 109 ~~~g-~~~~~~~g~~~~~~l~~~i 131 (428)
|.+| +....|.|.++.+.+.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9877 4578899999999998875
No 47
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.3e-16 Score=148.14 Aligned_cols=221 Identities=36% Similarity=0.574 Sum_probs=172.8
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEc
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~ 240 (428)
....++...+..++...+.+++|.||++||++|+.+.+.|.+++..+++.+.++.|||+...++|++|+|+++|++.+|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 34444566666677778889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHHhhcCC--CCc-ceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHH
Q 014216 241 ADKDSPIPYEGARTAGAIESFALEQLETNVA--PPE-VTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEML 317 (428)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~--~~~-v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~ 317 (428)
++ ..++.|.|..+.+.+..|....+..... .+. +..++..++.+.........++.|...++. .-+.+...+
T Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~----~ck~l~~~~ 184 (383)
T KOG0191|consen 110 PG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCG----HCKKLAPEW 184 (383)
T ss_pred CC-CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccH----HhhhcChHH
Confidence 77 6799999999999999999888765432 234 666666666554444444444444333332 234456788
Q ss_pred HHHHHHhhc-CcceEEEecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHHHHHhcC
Q 014216 318 LSVAEKFKR-GHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRG 388 (428)
Q Consensus 318 ~~~a~~~~~-~~~~f~~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g 388 (428)
.++|..+.+ ..+.++.+++.....++..+++.. +|++.++.+.......+.+.-+.+.|.+|+.+...-
T Consensus 185 ~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~--~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 185 EKLAKLLKSKENVELGKIDATVHKSLASRLEVRG--YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHhccCcceEEEeeccchHHHHhhhhcccC--CceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 888888874 348999998877788999999986 999988876665123456678899999999888544
No 48
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.72 E-value=7.6e-17 Score=125.26 Aligned_cols=101 Identities=49% Similarity=0.880 Sum_probs=92.8
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC--chhHhhhcCCCcCcEEEEE
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~~~~~~~v~~~P~i~~~ 239 (428)
+.+++..++...+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+. +..++++|+++++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 67889999999887778889999999999999999999999999999889999999998 7899999999999999999
Q ss_pred cCCC----CCcccccCCCCHHHHHHHH
Q 014216 240 GADK----DSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 240 ~~~~----~~~~~y~g~~~~~~i~~fi 262 (428)
.+++ .....|.|..+.+.|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 8775 3578899999999999997
No 49
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=4.4e-17 Score=124.77 Aligned_cols=99 Identities=32% Similarity=0.640 Sum_probs=89.2
Q ss_pred CccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCC
Q 014216 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP 115 (428)
Q Consensus 36 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~ 115 (428)
+.++|...+...+++++|+||++||++|+.+.+.+.++++.+++++.|+.+|+++++.++++|++.++|++++|.+|+..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45677755555567999999999999999999999999999988899999999999999999999999999999999888
Q ss_pred ccccCCCCcchHHHHHHHH
Q 014216 116 VDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 116 ~~~~g~~~~~~l~~~i~~~ 134 (428)
..+.|..+.+.+..|+.+.
T Consensus 82 ~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 8888999999999998764
No 50
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.71 E-value=1.2e-16 Score=122.81 Aligned_cols=101 Identities=63% Similarity=1.106 Sum_probs=93.4
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcC
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~ 241 (428)
+.+++.+++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.+..++++|+|+++|++++|+.
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 57888999999887777789999999999999999999999999999899999999999999999999999999999987
Q ss_pred CCCCcccccCCCCHHHHHHHH
Q 014216 242 DKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi 262 (428)
+......|.|..+.++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 756788999999999999996
No 51
>PTZ00062 glutaredoxin; Provisional
Probab=99.71 E-value=2.1e-16 Score=133.73 Aligned_cols=161 Identities=9% Similarity=0.128 Sum_probs=114.4
Q ss_pred ccchHHHhhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCC
Q 014216 37 PNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP 115 (428)
Q Consensus 37 ~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~ 115 (428)
.+++.+. +++ .+.++++|||+||++|+.+.+.+.+++++++. +.|+.||.+ |+|.++|++++|++|+.+
T Consensus 6 ~ee~~~~-i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 6 KEEKDKL-IESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred HHHHHHH-HhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 4566643 343 48899999999999999999999999999865 899999987 999999999999999998
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCCeEEEEE---ECCCChh
Q 014216 116 VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEF---FAPWCGH 192 (428)
Q Consensus 116 ~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f---~~~~c~~ 192 (428)
.++.|. ++..+..++.+... .++. .. .....+.+.+++++++..= +.|+|++
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~----------------------~~~~-~~-~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~ 130 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQ----------------------KGSS-ED-TVEKIERLIRNHKILLFMKGSKTFPFCRF 130 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcC----------------------CCCH-HH-HHHHHHHHHhcCCEEEEEccCCCCCCChh
Confidence 898875 57788888876631 1111 11 1122222334444332222 2279999
Q ss_pred HhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHh----hhcCCCcCcEEEE
Q 014216 193 CKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM----SKFNVQGFPTILV 238 (428)
Q Consensus 193 c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~----~~~~v~~~P~i~~ 238 (428)
|+.....+++. .+.|..+|...++++. +..|-..+|.+.+
T Consensus 131 C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 131 SNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 99999988853 4667777777665443 3335667888776
No 52
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=5.5e-17 Score=124.03 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=78.4
Q ss_pred ccchHHHhhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH---hHHHHcCCccccEEEEEeCC
Q 014216 37 PNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFPTIKVFVPG 112 (428)
Q Consensus 37 ~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~P~~~~~~~g 112 (428)
.++|++.+.+. +++++|.||++||++|+.+.|.+.++++.+ +.+.|+.||++++. +++++|+|+++||+++|++|
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 45677555433 889999999999999999999999999998 56899999999874 89999999999999999999
Q ss_pred CCCccccCCCCcchHHHHH
Q 014216 113 KPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~i 131 (428)
+.+.++.|.. ++.+.+.+
T Consensus 82 ~~v~~~~G~~-~~~l~~~~ 99 (103)
T cd02985 82 EKIHEEEGIG-PDELIGDV 99 (103)
T ss_pred eEEEEEeCCC-HHHHHHHH
Confidence 8888888844 45555444
No 53
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-17 Score=127.00 Aligned_cols=106 Identities=30% Similarity=0.503 Sum_probs=97.1
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
..+..++..++.+.+.++..|++|.||++||++|+.+.|.+++++..+.+.+.|+.||.++..+++.+|+|+.+|++++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHHHH
Q 014216 240 GADKDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
++| +..-.+.|..+.+.|.++|.+.+
T Consensus 123 knG-e~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNG-EKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECC-EEeeeecccCCHHHHHHHHHHHh
Confidence 954 44568889999999999998875
No 54
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.71 E-value=5.3e-17 Score=122.35 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=89.2
Q ss_pred CCcEEeCccchHHHhhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEE
Q 014216 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~--C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~ 107 (428)
.....++..+|+ ...+.+++++|.||++| |++|+.+.|.++++++++++.+.|+.+|++++++++.+|+|+++||++
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLD-DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHH-HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 456688999999 55588999999999997 999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccccCCCCcchHH
Q 014216 108 VFVPGKPPVDYQGARDVKPIA 128 (428)
Q Consensus 108 ~~~~g~~~~~~~g~~~~~~l~ 128 (428)
+|++|+.+.+..|..+.+.+.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 999999888888987766553
No 55
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.70 E-value=9.6e-17 Score=122.52 Aligned_cols=94 Identities=20% Similarity=0.449 Sum_probs=82.1
Q ss_pred CccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC
Q 014216 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 36 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
+.++|+ .++.++++++|+||++||++|+.+.|.+.+++..+++ .+.|+.+|++ +.+++++|+|+++|++++|++|+.
T Consensus 6 ~~~~~~-~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWE-ELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHH-HHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 456777 4567899999999999999999999999999999885 4789999999 788999999999999999999988
Q ss_pred CccccCCCCcchHHHHHH
Q 014216 115 PVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 115 ~~~~~g~~~~~~l~~~i~ 132 (428)
+.+..|. +.+.+.++|.
T Consensus 84 ~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 84 VAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEEecC-ChHHHHHHHh
Confidence 7788884 7777777765
No 56
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=8.9e-17 Score=122.94 Aligned_cols=97 Identities=49% Similarity=0.976 Sum_probs=86.9
Q ss_pred EeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHh--cCceEEEEEcCcccHhHHHHcCCccccEEEEEeC
Q 014216 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (428)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~--~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~ 111 (428)
+++.++|. ..+.++++++|+||++||++|+.+.+.|.++++.+ .+.+.++.+||+++..++++|+|+++|++++|.+
T Consensus 2 ~l~~~~~~-~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFD-ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHH-HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 56778888 45556669999999999999999999999999999 5789999999999999999999999999999988
Q ss_pred C-CCCccccCCCCcchHHHHH
Q 014216 112 G-KPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 112 g-~~~~~~~g~~~~~~l~~~i 131 (428)
+ ....+|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 6688999999998888774
No 57
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=2.1e-15 Score=131.56 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=139.7
Q ss_pred CCeEEEEEEC---CCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCC
Q 014216 178 KDLWIVEFFA---PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253 (428)
Q Consensus 178 ~~~~~v~f~~---~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~ 253 (428)
+...++.|++ +||++|+.+.+.++++++.+.. .+.++.+|.++.++++++|+|.++|++++|+++.....++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4556777888 9999999999999999999853 25567777668999999999999999999986654335789988
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceecCchhhhhhh-cCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEE
Q 014216 254 TAGAIESFALEQLETNVAPPEVTELTSQDVMEEK-CGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFV 332 (428)
Q Consensus 254 ~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~ 332 (428)
..+++.+|+...+..... -..++... .+.+ ...++..++.|+..++.... .....+.+++..+ +. +.+.
T Consensus 99 ~~~~l~~~i~~~~~~~~~---~~~L~~~~-~~~l~~~~~pv~I~~F~a~~C~~C~----~~~~~l~~l~~~~-~~-i~~~ 168 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQG---EPGLSEKT-VELLQSLDEPVRIEVFVTPTCPYCP----YAVLMAHKFALAN-DK-ILGE 168 (215)
T ss_pred CHHHHHHHHHHHHHhcCC---CCCCCHHH-HHHHHhcCCCcEEEEEECCCCCCcH----HHHHHHHHHHHhc-Cc-eEEE
Confidence 899999999877543322 12333221 2222 23455666767777665443 3446777777764 34 8888
Q ss_pred EecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHHHH
Q 014216 333 WAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE 384 (428)
Q Consensus 333 ~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~ 384 (428)
.+|....+++.+.+|+.. .|+++++.. +.. +.|..+.+++.+||.+
T Consensus 169 ~vD~~~~~~~~~~~~V~~--vPtl~i~~~-~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 169 MIEANENPDLAEKYGVMS--VPKIVINKG-VEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred EEeCCCCHHHHHHhCCcc--CCEEEEecC-CEE---EECCCCHHHHHHHHHh
Confidence 999999999999999986 999988642 221 5567788899998864
No 58
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3e-16 Score=146.50 Aligned_cols=232 Identities=22% Similarity=0.394 Sum_probs=150.6
Q ss_pred ccccccCCCCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCc--ccHhHH
Q 014216 21 LSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDAN--EHQSLA 95 (428)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~--~~~~l~ 95 (428)
+..++++..++++.|+..+|...++.+.+.++|.||++||++|+++.|.|+++++.+.+ .+.++.|||. +|..+|
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 45667888899999999999988888888999999999999999999999999998875 5889999996 678999
Q ss_pred HHcCCccccEEEEEeCCCCC----ccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc-cch
Q 014216 96 QEYGIRGFPTIKVFVPGKPP----VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNF 170 (428)
Q Consensus 96 ~~~~v~~~P~~~~~~~g~~~----~~~~g~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~ 170 (428)
+.++|+++|++.+|..+..- ..+.|...+.++...+.+.+.+.. .++..+.+ +. -.++.+-+. +.+
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~----~~~~~~~W-P~----f~pl~~~~~~~~l 180 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED----AQNRYPSW-PN----FDPLKDTTTLEEL 180 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH----hhhcCCCC-CC----CCCCCCcchHHHH
Confidence 99999999999999766332 345566667777777766553322 22222222 21 011111111 222
Q ss_pred HHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccc
Q 014216 171 DELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY 249 (428)
Q Consensus 171 ~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y 249 (428)
.+.+....+.+.+.|-. ....-.+..+-..+.. .+.+..+-+++.-.+.. ++....|..++++++... ..+
T Consensus 181 ~~~~~~~~~yvAiv~e~------~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q-~l~ 252 (606)
T KOG1731|consen 181 DEGISTTANYVAIVFET------EPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQ-PLW 252 (606)
T ss_pred hcccccccceeEEEEec------CCcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCccc-ccc
Confidence 22221222244444533 2233445555555533 35555554455555555 888899999999866543 333
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q 014216 250 EGARTAGAIESFALEQLETN 269 (428)
Q Consensus 250 ~g~~~~~~i~~fi~~~~~~~ 269 (428)
....+.+...+-|.+.+...
T Consensus 253 ~~~~s~~~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 253 PSSSSRSAYVKKIDDLLGDK 272 (606)
T ss_pred cccccHHHHHHHHHHHhcCc
Confidence 44445545555555555443
No 59
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.69 E-value=3.2e-16 Score=134.15 Aligned_cols=185 Identities=27% Similarity=0.519 Sum_probs=129.7
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~ 253 (428)
+...|+|.||+|||++|+.+.|.|.++...+++ -+++|.+||+..+.++.+|||++||+|.+|+. ...+.|.|..
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a~dYRG~R 119 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHAIDYRGGR 119 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--CeeeecCCCc
Confidence 456999999999999999999999999988877 39999999999999999999999999999974 4589999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceecCc-hhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEE
Q 014216 254 TAGAIESFALEQLETNVAPPEVTELTS-QDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFV 332 (428)
Q Consensus 254 ~~~~i~~fi~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~ 332 (428)
+.+.|..|..+- +.+.+..++. +..+..+...+.+.+++|-- +...+.+.+..+|...-.. -.|.
T Consensus 120 ~Kd~iieFAhR~-----a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gt--------ge~PL~d~fidAASe~~~~-a~Ff 185 (468)
T KOG4277|consen 120 EKDAIIEFAHRC-----AAAIIEPINENQIEFEHLQARHQPFFVFFGT--------GEGPLFDAFIDAASEKFSV-ARFF 185 (468)
T ss_pred cHHHHHHHHHhc-----ccceeeecChhHHHHHHHhhccCceEEEEeC--------CCCcHHHHHHHHhhhheee-eeee
Confidence 999999998777 4567777765 44455555556676766631 1122445555555432222 2222
Q ss_pred EecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHHHHH
Q 014216 333 WAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEA 385 (428)
Q Consensus 333 ~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~~ 385 (428)
-. +.+++-... +....|++++|..++ |..+ .+.+.++|.+||.+-
T Consensus 186 Sa----seeVaPe~~-~~kempaV~VFKDet--f~i~-de~dd~dLseWinRE 230 (468)
T KOG4277|consen 186 SA----SEEVAPEEN-DAKEMPAVAVFKDET--FEIE-DEGDDEDLSEWINRE 230 (468)
T ss_pred cc----ccccCCccc-chhhccceEEEccce--eEEE-ecCchhHHHHHHhHh
Confidence 21 112222211 112479999997443 3222 245567888998764
No 60
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.68 E-value=4e-16 Score=120.70 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=94.9
Q ss_pred CCCCcEEeCccchHHHHhhcCCeEEEEEECCCChh--Hh--hHHHHHHHHHHHh--cCCeEEEEEeCCCchhHhhhcCCC
Q 014216 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGH--CK--KLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQ 231 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~~~~~~~v~ 231 (428)
....+..+|+++|.+.+.+++.++++.|++.||++ |+ .+.|.+.++|..+ .+++.|+.||++.+.+++++|||+
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 45678999999999999888889999999999977 99 8888999998888 778999999999999999999999
Q ss_pred cCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 232 GFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 232 ~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
++||+++|++|. .+.|.|..+.+.|.+|+.+.
T Consensus 87 ~iPTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 87 EEDSIYVFKDDE--VIEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred cccEEEEEECCE--EEEeeCCCCHHHHHHHHHHH
Confidence 999999998654 45699999999999999865
No 61
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.68 E-value=4.5e-16 Score=123.06 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=86.6
Q ss_pred ccchHHHhh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEE-EEeCCC-
Q 014216 37 PNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK-VFVPGK- 113 (428)
Q Consensus 37 ~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~-~~~~g~- 113 (428)
..++++.+. ..+++++|.||++||++|+.+.|.++++++.+++.+.|+.||+|+++++++.|+|++.|+++ +|++|+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeE
Confidence 467776555 35789999999999999999999999999999998899999999999999999999777666 889998
Q ss_pred CCccccC--------CCCcchHHHHHHHHHHHHH
Q 014216 114 PPVDYQG--------ARDVKPIAEFALQQIKALL 139 (428)
Q Consensus 114 ~~~~~~g--------~~~~~~l~~~i~~~l~~~~ 139 (428)
.+-+..| ..+.++|.+-+...++.+.
T Consensus 91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred EEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 5666677 5677778877777766544
No 62
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.67 E-value=4.1e-16 Score=119.75 Aligned_cols=93 Identities=43% Similarity=0.886 Sum_probs=82.0
Q ss_pred cchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC
Q 014216 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 38 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++|+ .+ .++++++|.||++||++|+.+.|.|.++++.+++ .+.++.+||++.+.++++++|.++|++++|.+| .
T Consensus 7 ~~~~-~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFK-DV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhh-hh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 5677 44 4578999999999999999999999999999853 488999999999999999999999999999766 4
Q ss_pred CccccCCCCcchHHHHHHH
Q 014216 115 PVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 115 ~~~~~g~~~~~~l~~~i~~ 133 (428)
...|.|..+.+.+..|+.+
T Consensus 84 ~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ceeecCCCCHHHHHHHHHh
Confidence 5779999999999999875
No 63
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.67 E-value=1.2e-16 Score=124.46 Aligned_cols=93 Identities=23% Similarity=0.363 Sum_probs=82.1
Q ss_pred CCcEEeCccchHHHhhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEE
Q 014216 30 SPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~ 107 (428)
..+.+++.++|.+.+.+. +++++|+||++||++|+.+.|.+++++..+.+ +.|+.||++++ .++++|+|.++|+++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 457789999999666554 38999999999999999999999999999875 78999999998 999999999999999
Q ss_pred EEeCCCCCccccCCCCc
Q 014216 108 VFVPGKPPVDYQGARDV 124 (428)
Q Consensus 108 ~~~~g~~~~~~~g~~~~ 124 (428)
+|++|+.+.++.|..+.
T Consensus 82 ~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 82 VYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEECCEEEEEEecHHHh
Confidence 99999988888775543
No 64
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.67 E-value=7.3e-16 Score=119.27 Aligned_cols=102 Identities=25% Similarity=0.614 Sum_probs=89.0
Q ss_pred CcEEeCccchHHHHh--hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCC-chhHhh-hcCCCcCcE
Q 014216 161 ESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-EKSLMS-KFNVQGFPT 235 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-~~~~~~-~~~v~~~P~ 235 (428)
.|++++.+++...+. +.+++++|.||++||++|+.+.+.|.++++.+++. +.++.||++. ...++. .++++.+|+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 477889999888763 35679999999999999999999999999999874 9999999987 577886 499999999
Q ss_pred EEEEcCCCCCcccccCC-CCHHHHHHHH
Q 014216 236 ILVFGADKDSPIPYEGA-RTAGAIESFA 262 (428)
Q Consensus 236 i~~~~~~~~~~~~y~g~-~~~~~i~~fi 262 (428)
+++|..++.....|.|. .+.+.|.+|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99998777778999995 7999998885
No 65
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.67 E-value=4.1e-16 Score=119.85 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=81.8
Q ss_pred cchHHHhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcc----cHhHHHHcCCccccEEEEEe
Q 014216 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 38 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~P~~~~~~ 110 (428)
++|. .+++++++++|+||++||++|+.+.+.+ .+++..+.+++.++.+|+++ ...++++|++.++|++++|.
T Consensus 2 ~~~~-~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALA-QALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHH-HHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 3456 5567899999999999999999999988 67888888789999999987 67899999999999999998
Q ss_pred --CCCCCccccCCCCcchHHHHH
Q 014216 111 --PGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 111 --~g~~~~~~~g~~~~~~l~~~i 131 (428)
+|+.+.++.|..+.+.+.++|
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHh
Confidence 678789999999999988876
No 66
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.7e-16 Score=118.00 Aligned_cols=84 Identities=27% Similarity=0.610 Sum_probs=75.2
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcc
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~ 125 (428)
..+++++|+|||+||++|+.+.|.+.+++.++++ +.|+.||+++..+++++++|+..||+++|++|+.+.++.|.-..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~- 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA- 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence 3469999999999999999999999999999999 99999999999999999999999999999999988888886544
Q ss_pred hHHHHH
Q 014216 126 PIAEFA 131 (428)
Q Consensus 126 ~l~~~i 131 (428)
.+.+.+
T Consensus 97 ~l~~~i 102 (106)
T KOG0907|consen 97 ELEKKI 102 (106)
T ss_pred HHHHHH
Confidence 444444
No 67
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.66 E-value=1.1e-15 Score=116.73 Aligned_cols=98 Identities=32% Similarity=0.640 Sum_probs=86.6
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
.|++++.++|.+.+ . + .++|.||++||++|+.+.+.|.+++..+.. .+.|+.+||+.++.++++|+|+++|++++|
T Consensus 2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 57889999999865 3 2 378999999999999999999999998865 599999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHH
Q 014216 240 GADKDSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~ 263 (428)
+++ + ...|.|..+.++|.+|+.
T Consensus 79 ~~g-~-~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 79 KDG-V-FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred CCC-C-EEEecCCCCHHHHHHHHh
Confidence 754 3 578999999999999975
No 68
>PRK09381 trxA thioredoxin; Provisional
Probab=99.65 E-value=1.9e-15 Score=117.18 Aligned_cols=106 Identities=30% Similarity=0.634 Sum_probs=95.1
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
..+++++.+++.+.+.+.+.+++|.||++||++|+.+.+.|+++++.+.+.+.|+.+|++....++++|+++++|++++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 45788899999987777788999999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHHHH
Q 014216 240 GADKDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
+.+ .....+.|..+.+.|..|+..++
T Consensus 83 ~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 744 44567789999999999988764
No 69
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.65 E-value=1.5e-15 Score=116.86 Aligned_cols=101 Identities=46% Similarity=0.819 Sum_probs=90.0
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC--CeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
+|.+++..++.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+ .+.|+.+||+.+ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 4678999999998877778999999999999999999999999999977 599999999876 5888999999999999
Q ss_pred EcCCC-CCcccccCCCCHHHHHHHH
Q 014216 239 FGADK-DSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 239 ~~~~~-~~~~~y~g~~~~~~i~~fi 262 (428)
|..+. .....|.|..+.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 98765 4578899999999999885
No 70
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.65 E-value=1.3e-15 Score=116.25 Aligned_cols=100 Identities=21% Similarity=0.439 Sum_probs=85.2
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEEC--CCCh---hHhhHHHHHHHHHHHhcCCeEEEEEeC-----CCchhHhhhcCC
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFA--PWCG---HCKKLAPEWKKAANNLKGKVKLGHVDC-----DSEKSLMSKFNV 230 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~~a~~~~~~~~f~~v~~-----~~~~~~~~~~~v 230 (428)
.++.|++.+|.+.+ ..++.++|.||+ |||+ +|+.+++.|.+++. .+.++.||| .++.++|++|+|
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence 47889999999976 777889999999 9999 77777777766554 388999999 457889999999
Q ss_pred C--cCcEEEEEcCC-CCCcccccCC-CCHHHHHHHHHHH
Q 014216 231 Q--GFPTILVFGAD-KDSPIPYEGA-RTAGAIESFALEQ 265 (428)
Q Consensus 231 ~--~~P~i~~~~~~-~~~~~~y~g~-~~~~~i~~fi~~~ 265 (428)
+ ++|+|++|+.+ ...+..|.|. .+.+.|.+|+.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 99999999876 3457899996 9999999999875
No 71
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.65 E-value=1.5e-15 Score=117.06 Aligned_cols=101 Identities=44% Similarity=0.823 Sum_probs=90.8
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhc--CCeEEEEEeCCC-chhHhhhcCCCcCcEEEE
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS-EKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~-~~~~~~~~~v~~~P~i~~ 238 (428)
+..++..++...+.+.++++++.||++||++|+.+.+.|.++++.+. +.+.|+.+||+. ...++++|+++++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56788888988765566689999999999999999999999999997 469999999999 899999999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHH
Q 014216 239 FGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 239 ~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
|..++.....|.|..+.+.|.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 987767788999999999998885
No 72
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.65 E-value=8.2e-16 Score=116.38 Aligned_cols=89 Identities=27% Similarity=0.506 Sum_probs=83.1
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCC
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~ 122 (428)
.+.+.+++++++||++||+.|+.+.|.+.++++.+.+.+.++.+|+++++++++++++.++|++++|++|+.+.++.|..
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 45567899999999999999999999999999999888999999999999999999999999999999998888999999
Q ss_pred CcchHHHHH
Q 014216 123 DVKPIAEFA 131 (428)
Q Consensus 123 ~~~~l~~~i 131 (428)
+.+.+..|+
T Consensus 88 ~~~~~~~~l 96 (97)
T cd02949 88 MKSEYREFI 96 (97)
T ss_pred cHHHHHHhh
Confidence 999888876
No 73
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.65 E-value=1.6e-15 Score=117.92 Aligned_cols=84 Identities=43% Similarity=0.892 Sum_probs=74.4
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCc--ccHhHHHHcCCccccE
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDAN--EHQSLAQEYGIRGFPT 105 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~--~~~~l~~~~~v~~~P~ 105 (428)
++.+++..+|+..+...+++++|.||++||++|+.+.|.|.++++.+++ .+.++.+||+ .++.+|++++++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5789999999976666678999999999999999999999999998763 5899999986 4678999999999999
Q ss_pred EEEEeCCCC
Q 014216 106 IKVFVPGKP 114 (428)
Q Consensus 106 ~~~~~~g~~ 114 (428)
+++|++|..
T Consensus 82 ~~lf~~~~~ 90 (114)
T cd02992 82 LRYFPPFSK 90 (114)
T ss_pred EEEECCCCc
Confidence 999988864
No 74
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.64 E-value=8.4e-16 Score=119.12 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=79.9
Q ss_pred CCcEEeCc-cchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEE
Q 014216 30 SPVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 30 ~~~~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~ 108 (428)
..+.+++. ++|. ..+.++++++|+||++||++|+.+.|.++++++.+.+ +.|+.||++++++++++|+|.++|++++
T Consensus 4 g~v~~i~~~~~~~-~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFF-EIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHH-HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 45667777 7888 4556788999999999999999999999999999876 8999999999999999999999999999
Q ss_pred EeCCCCCccccCCC
Q 014216 109 FVPGKPPVDYQGAR 122 (428)
Q Consensus 109 ~~~g~~~~~~~g~~ 122 (428)
|++|+.+.++.|..
T Consensus 82 fk~G~~v~~~~g~~ 95 (113)
T cd02989 82 FKNGKTVDRIVGFE 95 (113)
T ss_pred EECCEEEEEEECcc
Confidence 99998776666544
No 75
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.64 E-value=2.9e-15 Score=129.06 Aligned_cols=111 Identities=34% Similarity=0.770 Sum_probs=96.7
Q ss_pred CCCcEEeCccchHHHHhhc----CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCc
Q 014216 159 SNESIELNSSNFDELVLKS----KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP 234 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P 234 (428)
...++++++.+|.+.+... ..+++|.||++||++|+.+.+.|+++++.+++.+.|+.+||+.+++++++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 4679999999999876432 468999999999999999999999999999989999999999999999999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHHHHHHhhcC
Q 014216 235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270 (428)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~ 270 (428)
++++|+++ .....+.|..+.++|..|+..++....
T Consensus 109 Tl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 109 TLLLFDKG-KMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred EEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 99999854 333344677899999999999986554
No 76
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.64 E-value=1.8e-15 Score=116.04 Aligned_cols=98 Identities=40% Similarity=0.897 Sum_probs=87.0
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
++.++.+++...+.+ ..++|.||++||++|+.+.+.|.++++.+.+ .+.|+.+||+.+..+|++|++.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567888999988743 3599999999999999999999999999987 69999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHH
Q 014216 239 FGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 239 ~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
|+++ ....+|.|..+.+.|.+|+
T Consensus 80 ~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCC-CeeeEeeCCCCHHHHHhhC
Confidence 9754 4567899999999988874
No 77
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.63 E-value=3e-15 Score=113.28 Aligned_cols=93 Identities=27% Similarity=0.544 Sum_probs=82.0
Q ss_pred chHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcc
Q 014216 169 NFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI 247 (428)
Q Consensus 169 ~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~ 247 (428)
++.+.+.+. +++++|.||++||++|+.+.+.+.+++..+.+.+.|+.||++..+.++++|++.++|++++|++ +....
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~-g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA-GQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeC-CEEee
Confidence 455566444 6799999999999999999999999999998889999999999999999999999999999984 44456
Q ss_pred cccCCCCHHHHHHHH
Q 014216 248 PYEGARTAGAIESFA 262 (428)
Q Consensus 248 ~y~g~~~~~~i~~fi 262 (428)
.+.|..+.+.|..|+
T Consensus 81 ~~~g~~~~~~l~~~l 95 (96)
T cd02956 81 GFQGAQPEEQLRQML 95 (96)
T ss_pred eecCCCCHHHHHHHh
Confidence 789999999998886
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=2e-15 Score=122.03 Aligned_cols=97 Identities=21% Similarity=0.330 Sum_probs=83.7
Q ss_pred cchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc--HhHHHHcCCccccEEEEEe-CCCC
Q 014216 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--QSLAQEYGIRGFPTIKVFV-PGKP 114 (428)
Q Consensus 38 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~P~~~~~~-~g~~ 114 (428)
..++ .++.++++++|+||++||++|+.+.|.+.++++.+.+.+.|+.||++.. ..++++|+|.++|++++|. +|+.
T Consensus 11 ~~~~-~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPE-VALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHH-HHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 3455 4556789999999999999999999999999999988777887777644 6899999999999999995 7887
Q ss_pred CccccCCCCcchHHHHHHHHH
Q 014216 115 PVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 115 ~~~~~g~~~~~~l~~~i~~~l 135 (428)
+.++.|....+.+..++.+.+
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 888999998888988888775
No 79
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.62 E-value=2.1e-15 Score=116.86 Aligned_cols=100 Identities=19% Similarity=0.416 Sum_probs=85.5
Q ss_pred EeCccchHHHHhh--cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEEEEc
Q 014216 164 ELNSSNFDELVLK--SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (428)
Q Consensus 164 ~l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~ 240 (428)
.++.+++.+.+.. .+++++|.||++||++|+.+.+.|.++++.+.+ .+.|+.||++.++.++++++|+++|++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 3566677665543 567999999999999999999999999999976 5999999999999999999999999999997
Q ss_pred CCCCCcccccCCCCHHHHHHHHHH
Q 014216 241 ADKDSPIPYEGARTAGAIESFALE 264 (428)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~fi~~ 264 (428)
++ .....+.|..+.+.|..|+.+
T Consensus 88 ~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NG-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CC-EEEEEecCCCCHHHHHHHHhc
Confidence 54 445566898999999999864
No 80
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.62 E-value=3.7e-15 Score=114.21 Aligned_cols=99 Identities=53% Similarity=0.936 Sum_probs=89.0
Q ss_pred eCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC--CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCC
Q 014216 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD 242 (428)
Q Consensus 165 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~ 242 (428)
|+.+++...+ ..+++++|.||++||+.|+.+.+.|..++..+.+ .+.|+.+||+.+..++++|+++++|++++|+.+
T Consensus 1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 3556777776 4788999999999999999999999999999987 699999999999999999999999999999877
Q ss_pred CCCcccccCCCCHHHHHHHHHHH
Q 014216 243 KDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 243 ~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
+. ...|.|..+.+.|..|+.++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 65 88999999999999998765
No 81
>PTZ00051 thioredoxin; Provisional
Probab=99.62 E-value=2.6e-15 Score=114.07 Aligned_cols=93 Identities=30% Similarity=0.606 Sum_probs=79.6
Q ss_pred cEEeCc-cchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 32 VVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 32 ~~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
+.+++. +++. .+++++++++|+||++||++|+.+.+.+.++++.+.+ +.|+.+|++++..++++|++.++|++++|+
T Consensus 2 v~~i~~~~~~~-~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFE-STLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHH-HHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 345554 4555 6777889999999999999999999999999998765 899999999999999999999999999999
Q ss_pred CCCCCccccCCCCcchH
Q 014216 111 PGKPPVDYQGARDVKPI 127 (428)
Q Consensus 111 ~g~~~~~~~g~~~~~~l 127 (428)
+|+.+.++.|. ..+.|
T Consensus 80 ~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 80 NGSVVDTLLGA-NDEAL 95 (98)
T ss_pred CCeEEEEEeCC-CHHHh
Confidence 99888888885 44443
No 82
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.61 E-value=3.4e-15 Score=113.23 Aligned_cols=92 Identities=22% Similarity=0.449 Sum_probs=77.7
Q ss_pred cchHHHhhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCc
Q 014216 38 NNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPV 116 (428)
Q Consensus 38 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~ 116 (428)
++|++.+... +++++|.||++||++|+++.+.+.++++.+...+.++.+|+++.++++++|++.++|++++|.+|+.+.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 5667444333 599999999999999999999999999997768999999999999999999999999999999998777
Q ss_pred cccCCCCcchHHHH
Q 014216 117 DYQGARDVKPIAEF 130 (428)
Q Consensus 117 ~~~g~~~~~~l~~~ 130 (428)
++.|. +.+.|.+.
T Consensus 83 ~~~g~-~~~~l~~~ 95 (97)
T cd02984 83 RVSGA-DPKELAKK 95 (97)
T ss_pred EEeCC-CHHHHHHh
Confidence 77774 44555443
No 83
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.61 E-value=5.1e-15 Score=112.18 Aligned_cols=84 Identities=27% Similarity=0.602 Sum_probs=76.4
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCC-CchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCC
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGART 254 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (428)
..+++++|.||++||++|+.+.+.|.++++.+++ +.|+.||++ ....++++|+|+++||+++|+++ ...+|.|..+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~ 92 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRT 92 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCC
Confidence 3577999999999999999999999999999974 889999988 78899999999999999999865 5789999999
Q ss_pred HHHHHHHH
Q 014216 255 AGAIESFA 262 (428)
Q Consensus 255 ~~~i~~fi 262 (428)
.+.|.+|+
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99999885
No 84
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.4e-15 Score=126.76 Aligned_cols=109 Identities=33% Similarity=0.657 Sum_probs=98.5
Q ss_pred CCCCcEEeCccchHHHHhhcC--CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcE
Q 014216 158 DSNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~ 235 (428)
..+.++++|+.+|...++... .|++|+||+|||++|+.+.|.+.+++..+++++.+++|||+..+.++.+|||+++|+
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence 445599999999999886643 399999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcccccCCCCHHHHHHHHHHHHh
Q 014216 236 ILVFGADKDSPIPYEGARTAGAIESFALEQLE 267 (428)
Q Consensus 236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~ 267 (428)
+++|+.|. ..-.|.|......|..|+.+++.
T Consensus 101 V~af~dGq-pVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 101 VYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEEeeCCc-CccccCCCCcHHHHHHHHHHhcC
Confidence 99999654 46778999889999999998864
No 85
>PLN02309 5'-adenylylsulfate reductase
Probab=99.59 E-value=9.4e-15 Score=138.40 Aligned_cols=107 Identities=33% Similarity=0.583 Sum_probs=93.1
Q ss_pred CCCCcEEeCccchHHHhh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc-ccHhHHH-HcCCcc
Q 014216 28 SSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-EHQSLAQ-EYGIRG 102 (428)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~-~~~~l~~-~~~v~~ 102 (428)
....+.+++.++|++.+. .+++++||+||++||++|+.+.|.|.++++.+.+ .+.|+.+||+ .+..+|+ +|+|.+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 456789999999996542 4688999999999999999999999999999976 4999999999 8889997 599999
Q ss_pred ccEEEEEeCCCC-CccccC-CCCcchHHHHHHHH
Q 014216 103 FPTIKVFVPGKP-PVDYQG-ARDVKPIAEFALQQ 134 (428)
Q Consensus 103 ~P~~~~~~~g~~-~~~~~g-~~~~~~l~~~i~~~ 134 (428)
+||+++|++|.. ...|.| .++.++|..|+...
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999988763 667874 79999999999753
No 86
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=9.1e-15 Score=138.52 Aligned_cols=106 Identities=33% Similarity=0.553 Sum_probs=91.0
Q ss_pred CCCCcEEeCccchHHHhh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc-eEEEEEcCcccH-hHH-HHcCCcc
Q 014216 28 SSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQ-SLA-QEYGIRG 102 (428)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~~~-~l~-~~~~v~~ 102 (428)
.+..+++|+..+|+..+. ..++++||.||++||++|+.+.|.|++++..+.+. +.|+.|||+.+. .++ ++|+|.+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 556899999999996553 46889999999999999999999999999999874 889999999753 454 7899999
Q ss_pred ccEEEEEeCCCC-Ccccc-CCCCcchHHHHHHH
Q 014216 103 FPTIKVFVPGKP-PVDYQ-GARDVKPIAEFALQ 133 (428)
Q Consensus 103 ~P~~~~~~~g~~-~~~~~-g~~~~~~l~~~i~~ 133 (428)
+||+++|++|.. ...|. |.++.+.|..|+..
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999998853 56787 58999999999863
No 87
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.59 E-value=7.3e-15 Score=110.50 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=70.6
Q ss_pred cchHHHhhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCc
Q 014216 38 NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPV 116 (428)
Q Consensus 38 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~ 116 (428)
+++++.+.. ++++++|.|+++||++|+.+.|.++++++++++.+.|+.||+++.+++++.|+|++.|++++|++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 456655544 4899999999999999999999999999999877999999999999999999999999999999987633
No 88
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.58 E-value=6.3e-15 Score=112.05 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=72.3
Q ss_pred cchHHHHhh-cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCc
Q 014216 168 SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP 246 (428)
Q Consensus 168 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~ 246 (428)
+++...+.. .+++++|.|+++||++|+.+.|.+.++|..+.+.+.|+.||.+++++++++|+|+++|++++|+++. ..
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~-~v 81 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK-HM 81 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE-EE
Confidence 445555543 5678999999999999999999999999999988999999999999999999999999999998654 34
Q ss_pred ccccCCCC
Q 014216 247 IPYEGART 254 (428)
Q Consensus 247 ~~y~g~~~ 254 (428)
-...|..+
T Consensus 82 ~~~~G~~~ 89 (114)
T cd02954 82 KIDLGTGN 89 (114)
T ss_pred EEEcCCCC
Confidence 44445433
No 89
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.58 E-value=1.8e-14 Score=110.81 Aligned_cols=99 Identities=43% Similarity=0.811 Sum_probs=87.1
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhc--CCeEEEEEeCCC--chhHhhhcCCCcCcEEE
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS--EKSLMSKFNVQGFPTIL 237 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~--~~~~~~~~~v~~~P~i~ 237 (428)
+..++...+...+ ..+++++|.||++||++|+.+.+.+.++++.+. +.+.|+.+|++. +..++++++++++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678888888776 556699999999999999999999999999997 568999999998 88999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHHHHH
Q 014216 238 VFGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
+|+.+ +....|.|..+.+.+.+|+
T Consensus 81 ~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 99854 4577899999999998874
No 90
>PRK10996 thioredoxin 2; Provisional
Probab=99.57 E-value=3.2e-14 Score=114.72 Aligned_cols=105 Identities=28% Similarity=0.607 Sum_probs=93.0
Q ss_pred CCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
...+.+++..++...+ +.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++..+.++++|+|+++|++++
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 4456778888888765 568899999999999999999999999999999899999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 239 FGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
|++ ++....+.|..+.+.|.+|+.++
T Consensus 113 ~~~-G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKN-GQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEC-CEEEEEEcCCCCHHHHHHHHHHh
Confidence 974 45566778999999999998765
No 91
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.57 E-value=1.9e-14 Score=109.94 Aligned_cols=98 Identities=48% Similarity=0.930 Sum_probs=86.9
Q ss_pred EeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHh--cCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcC
Q 014216 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~ 241 (428)
+++..++.+.+. ..++++|.|+++||+.|+.+.+.|..+++.+ .+.+.|+.+|++.+..++++|+|+.+|++++|.+
T Consensus 2 ~l~~~~~~~~i~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVK-DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHh-CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 466778887764 4459999999999999999999999999999 5789999999999999999999999999999987
Q ss_pred CCCCcccccCCCCHHHHHHHH
Q 014216 242 DKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi 262 (428)
++....+|.|..+.++|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 756788999999999988774
No 92
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.57 E-value=3.6e-13 Score=115.17 Aligned_cols=172 Identities=28% Similarity=0.396 Sum_probs=143.0
Q ss_pred hhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC-CccccCC-CCcchHHHHHHHHHHHHHHHh
Q 014216 65 ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGA-RDVKPIAEFALQQIKALLKER 142 (428)
Q Consensus 65 ~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~-~~~~~g~-~~~~~l~~~i~~~l~~~~~~~ 142 (428)
.....+.++|+.+.+.+.|+.+. +.++++++++.. |++++|+++.. ...|.|. .+.+.|.+||...
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~-------- 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN-------- 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh--------
Confidence 35568899999999889998887 678999999999 99999988543 6889998 8999999999988
Q ss_pred hcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCC-eEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 014216 143 LSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221 (428)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~ 221 (428)
..|.+..++..++.... ..+. +++++|..............+..+|+.+++++.|+.+|++..
T Consensus 75 ---------------~~P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~ 138 (184)
T PF13848_consen 75 ---------------SFPLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF 138 (184)
T ss_dssp ---------------SSTSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT
T ss_pred ---------------ccccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh
Confidence 68889999999999876 4444 477777766566778888899999999999999999999988
Q ss_pred hhHhhhcCCC--cCcEEEEEcCCCCCc-ccccCCCCHHHHHHHHHH
Q 014216 222 KSLMSKFNVQ--GFPTILVFGADKDSP-IPYEGARTAGAIESFALE 264 (428)
Q Consensus 222 ~~~~~~~~v~--~~P~i~~~~~~~~~~-~~y~g~~~~~~i~~fi~~ 264 (428)
+.+++.+|+. .+|+++++....+.. +.+.|..+.+.|..|+.+
T Consensus 139 ~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 139 PRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 8999999998 889999997444322 224789999999999864
No 93
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.57 E-value=2.9e-14 Score=109.03 Aligned_cols=99 Identities=30% Similarity=0.613 Sum_probs=86.6
Q ss_pred CccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCC
Q 014216 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS 245 (428)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~ 245 (428)
+.+++.+.+.+.+++++++||++||+.|+.+.+.+.++++.+.+.+.|+.+|++.++.++++|++..+|++++|+++ ..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~~ 80 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG-KE 80 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC-cE
Confidence 45567777655566999999999999999999999999999988899999999999999999999999999999654 44
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 014216 246 PIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~ 265 (428)
...+.|..+.+.+.+|+.++
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 56777888999999998765
No 94
>PHA02278 thioredoxin-like protein
Probab=99.57 E-value=2e-14 Score=108.71 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=77.4
Q ss_pred cchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc----hhHhhhcCCCcCcEEEEEcCCC
Q 014216 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNVQGFPTILVFGADK 243 (428)
Q Consensus 168 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~~~~~~~v~~~P~i~~~~~~~ 243 (428)
.+|...+ ..+++++|.||++||++|+.+.|.+.++++.+...+.|+.+|.+.+ ++++++|+|.++|++++|++|
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G- 82 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG- 82 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC-
Confidence 4455554 5788999999999999999999999999998766678999998875 689999999999999999965
Q ss_pred CCcccccCCCCHHHHHHH
Q 014216 244 DSPIPYEGARTAGAIESF 261 (428)
Q Consensus 244 ~~~~~y~g~~~~~~i~~f 261 (428)
+...+..|..+.+.|.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 456677888888877665
No 95
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.56 E-value=2.2e-14 Score=111.24 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=78.9
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCC--ccccCCCC
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP--VDYQGARD 123 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~--~~~~g~~~ 123 (428)
.++..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|.++|++++|++|+.. .++.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 45667899999999999999999999999886 5689999999999999999999999999999886542 37889999
Q ss_pred cchHHHHHHHHH
Q 014216 124 VKPIAEFALQQI 135 (428)
Q Consensus 124 ~~~l~~~i~~~l 135 (428)
...+..||...+
T Consensus 99 ~~el~~~i~~i~ 110 (113)
T cd02975 99 GYEFASLIEDIV 110 (113)
T ss_pred hHHHHHHHHHHH
Confidence 999999998765
No 96
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.56 E-value=2e-14 Score=120.05 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=79.0
Q ss_pred CCCCcEEeCc-cchHHHhhcCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCcccc
Q 014216 28 SSSPVVQLTP-NNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP 104 (428)
Q Consensus 28 ~~~~~~~l~~-~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 104 (428)
....+.+++. ++|...+...+ .+++|+||++||++|+.+.|.|.+++..+.. +.|+.||+++. .++.+|+|.++|
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCC
Confidence 3567889998 89996665443 4999999999999999999999999999874 89999999987 899999999999
Q ss_pred EEEEEeCCCCCccccC
Q 014216 105 TIKVFVPGKPPVDYQG 120 (428)
Q Consensus 105 ~~~~~~~g~~~~~~~g 120 (428)
|+++|++|+.+.++.|
T Consensus 138 Tlllyk~G~~v~~~vG 153 (175)
T cd02987 138 ALLVYKGGELIGNFVR 153 (175)
T ss_pred EEEEEECCEEEEEEec
Confidence 9999999987655544
No 97
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.55 E-value=2.8e-14 Score=107.05 Aligned_cols=91 Identities=34% Similarity=0.688 Sum_probs=80.8
Q ss_pred chHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccc
Q 014216 39 NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY 118 (428)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~ 118 (428)
+|. ..+..+++++|+||++||++|+.+.+.+.+++.. .+.+.++.+|++++..+++++++.++|+++++.+|+.+..+
T Consensus 2 ~~~-~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFE-ELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chH-HHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 455 3445569999999999999999999999999988 66799999999999999999999999999999999888888
Q ss_pred cCCCCcchHHHHH
Q 014216 119 QGARDVKPIAEFA 131 (428)
Q Consensus 119 ~g~~~~~~l~~~i 131 (428)
.|..+.+.|..||
T Consensus 80 ~g~~~~~~l~~~i 92 (93)
T cd02947 80 VGADPKEELEEFL 92 (93)
T ss_pred ecCCCHHHHHHHh
Confidence 8988888887776
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.55 E-value=2.7e-14 Score=111.96 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=78.5
Q ss_pred CCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc-----------HhHHHHc
Q 014216 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-----------QSLAQEY 98 (428)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~~~ 98 (428)
..+..++.+++. ..+.+++.++|+||++||++|+.+.|.+.++++..+ +.++.||.+.+ .++.+++
T Consensus 6 ~~~~~it~~~~~-~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRAL-EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHH-HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 345678888888 455678899999999999999999999999999833 55666777643 2566776
Q ss_pred C----CccccEEEEEeCCCCCccccC-CCCcchHHHHHH
Q 014216 99 G----IRGFPTIKVFVPGKPPVDYQG-ARDVKPIAEFAL 132 (428)
Q Consensus 99 ~----v~~~P~~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 132 (428)
+ +.++||+++|++|+.+.+..| ..+.++|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5 456999999999998888888 455778877763
No 99
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.53 E-value=5.3e-14 Score=111.91 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=80.4
Q ss_pred HhhcCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhcCceEEEEEcCccc-------------HhHHHHcCCccccE
Q 014216 43 KVLNAN-GVVLVEFYAPWCGHCQALTPIWE---KAATVLKGVATVAALDANEH-------------QSLAQEYGIRGFPT 105 (428)
Q Consensus 43 ~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~---~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~v~~~P~ 105 (428)
.+.+++ ++++|.||++||++|+.+.+.+. .+...+++.+.++.+|.+.+ ..++.+|++.++|+
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 456678 99999999999999999999884 56666666788899998864 78999999999999
Q ss_pred EEEEeCC--CCCccccCCCCcchHHHHHHHHHHH
Q 014216 106 IKVFVPG--KPPVDYQGARDVKPIAEFALQQIKA 137 (428)
Q Consensus 106 ~~~~~~g--~~~~~~~g~~~~~~l~~~i~~~l~~ 137 (428)
++++.++ +.+.++.|..+.+.+..++...+..
T Consensus 88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 88 VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999764 6688999999999999998877643
No 100
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.53 E-value=8.8e-14 Score=106.28 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=77.2
Q ss_pred ccchHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch---hHhhhcCCCcCcEEEEEcCC
Q 014216 167 SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILVFGAD 242 (428)
Q Consensus 167 ~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~~~~~~~v~~~P~i~~~~~~ 242 (428)
.+++.+.+... +++++|.||++||++|+.+.|.+.++++.+ ..+.|+.||++++. +++++|+|+++|++++|+++
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 35666666543 779999999999999999999999999999 67999999998774 89999999999999999744
Q ss_pred CCCcccccCCCCHHHHHHHHH
Q 014216 243 KDSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 243 ~~~~~~y~g~~~~~~i~~fi~ 263 (428)
+...++.| ...+.|.+-+.
T Consensus 82 -~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 82 -EKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred -eEEEEEeC-CCHHHHHHHHH
Confidence 45667777 45666666554
No 101
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.51 E-value=2e-13 Score=104.81 Aligned_cols=93 Identities=26% Similarity=0.386 Sum_probs=80.5
Q ss_pred chHHHHhhcCCeEEEEEECCCChhHhhHHHHH---HHHHHHhcCCeEEEEEeCCC----chhHhhhcCCCcCcEEEEEcC
Q 014216 169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----EKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 169 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----~~~~~~~~~v~~~P~i~~~~~ 241 (428)
.+.+.+ ..+++++|.|+++||++|+.+.+.+ .++++.+.+++.++.+|++. ...++++|++.++|++++|+.
T Consensus 3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 344444 6778999999999999999999988 67888888789999999876 568999999999999999986
Q ss_pred -CCCCcccccCCCCHHHHHHHH
Q 014216 242 -DKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 242 -~~~~~~~y~g~~~~~~i~~fi 262 (428)
+++...++.|..+.++|..++
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 567788899999999988875
No 102
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.51 E-value=1.3e-13 Score=104.03 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=85.7
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCC--ChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEE
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~ 237 (428)
.....++..+|.+.+ +.+..++|.|+++| |+.|+.+.|.+.++|+.+.+.+.|+.||++.++.++.+|+|+++||++
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 456688999999776 77889999999997 999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHH
Q 014216 238 VFGADKDSPIPYEGARTAGAIE 259 (428)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~ 259 (428)
+|++| +......|..+.+++.
T Consensus 89 ~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECC-EEEEEEeCccCHHHHh
Confidence 99865 4455667877766553
No 103
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.51 E-value=2.1e-13 Score=104.61 Aligned_cols=87 Identities=43% Similarity=0.944 Sum_probs=77.6
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCC
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA 252 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~ 252 (428)
..+++++|.||++||++|+.+.+.|.++++.+++ .+.++.+|++....++++++|.++|++++|+.+ ....|.|.
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~ 90 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD--LAYNYRGP 90 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--CceeecCC
Confidence 3467999999999999999999999999999853 499999999999999999999999999999643 46778999
Q ss_pred CCHHHHHHHHHH
Q 014216 253 RTAGAIESFALE 264 (428)
Q Consensus 253 ~~~~~i~~fi~~ 264 (428)
.+.+.|.+|+.+
T Consensus 91 ~~~~~l~~~~~~ 102 (104)
T cd03000 91 RTKDDIVEFANR 102 (104)
T ss_pred CCHHHHHHHHHh
Confidence 999999999865
No 104
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.50 E-value=2.9e-13 Score=109.63 Aligned_cols=92 Identities=23% Similarity=0.486 Sum_probs=79.3
Q ss_pred CCCcEEeCccchHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCc----
Q 014216 159 SNESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQG---- 232 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~---- 232 (428)
...+.+++.+++.+.+... ..+++|.||++||++|+.+.+.|.++++.+.+ .+.|+.||++++++++++|+|+.
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 4678899999999877444 46899999999999999999999999999975 59999999999999999999988
Q ss_pred --CcEEEEEcCCCCCcccccC
Q 014216 233 --FPTILVFGADKDSPIPYEG 251 (428)
Q Consensus 233 --~P~i~~~~~~~~~~~~y~g 251 (428)
+|++++|+++. ...++.|
T Consensus 107 ~~~PT~ilf~~Gk-~v~r~~G 126 (152)
T cd02962 107 KQLPTIILFQGGK-EVARRPY 126 (152)
T ss_pred CCCCEEEEEECCE-EEEEEec
Confidence 99999998543 4455554
No 105
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.50 E-value=3.1e-13 Score=103.12 Aligned_cols=95 Identities=23% Similarity=0.477 Sum_probs=78.2
Q ss_pred CccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCC
Q 014216 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244 (428)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~ 244 (428)
+.+++...+ +.+++++|.||++||++|+.+.+.|.+++..+.+ .+.|+.+|++ +.+++++|+|+++|++++|+++ +
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g-~ 82 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG-E 82 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC-E
Confidence 456666654 6788999999999999999999999999999985 4899999988 7789999999999999999854 3
Q ss_pred CcccccCCCCHHHHHHHHHH
Q 014216 245 SPIPYEGARTAGAIESFALE 264 (428)
Q Consensus 245 ~~~~y~g~~~~~~i~~fi~~ 264 (428)
...+..| .+.+.+.++|.+
T Consensus 83 ~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEec-CChHHHHHHHhh
Confidence 3444455 588888888753
No 106
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.50 E-value=2.5e-13 Score=128.87 Aligned_cols=107 Identities=29% Similarity=0.651 Sum_probs=92.8
Q ss_pred CCCCcEEeCccchHHHHh--hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCCch-hH-hhhcCCCc
Q 014216 158 DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK-SL-MSKFNVQG 232 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~-~~-~~~~~v~~ 232 (428)
....|++|+..+|.+.+. +.+++++|.||++||++|+.+.+.|.++|+.+.+. +.|+.||++.++ .+ +++|+|.+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 456899999999999873 46779999999999999999999999999999875 899999998754 44 47899999
Q ss_pred CcEEEEEcCCCCCccccc-CCCCHHHHHHHHHH
Q 014216 233 FPTILVFGADKDSPIPYE-GARTAGAIESFALE 264 (428)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~-g~~~~~~i~~fi~~ 264 (428)
+|++++|+++...++.|. |..+.+.|..|+.-
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999988776788897 58999999999853
No 107
>PLN02309 5'-adenylylsulfate reductase
Probab=99.49 E-value=2.6e-13 Score=128.73 Aligned_cols=107 Identities=28% Similarity=0.667 Sum_probs=94.3
Q ss_pred CCCCcEEeCccchHHHHh--hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCC-CchhHhh-hcCCCc
Q 014216 158 DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD-SEKSLMS-KFNVQG 232 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~-~~~~~~~-~~~v~~ 232 (428)
....+++++.+++.+.+. +.+++++|.||++||++|+.+.+.|.++|+.+.+. +.|+.+|++ ....+++ +|+|.+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 456789999999998763 46779999999999999999999999999999764 999999998 7778886 699999
Q ss_pred CcEEEEEcCCCCCcccccC-CCCHHHHHHHHHH
Q 014216 233 FPTILVFGADKDSPIPYEG-ARTAGAIESFALE 264 (428)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi~~ 264 (428)
+|++++|+++...++.|.| ..+.+.|.+|+..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 9999999887777889975 6899999999865
No 108
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.49 E-value=5.5e-13 Score=103.66 Aligned_cols=98 Identities=37% Similarity=0.807 Sum_probs=79.8
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCC--chhHhhhcCCCcCcE
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDS--EKSLMSKFNVQGFPT 235 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~--~~~~~~~~~v~~~P~ 235 (428)
++++++..++.+.+.+.+++++|.||++||++|+.+.+.|.++++.+++ .+.|+.+||+. +.+++++|+++.+|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5788999999998877777999999999999999999999999998864 59999999864 568999999999999
Q ss_pred EEEEcCCCCC---cccccCC-CCHHHH
Q 014216 236 ILVFGADKDS---PIPYEGA-RTAGAI 258 (428)
Q Consensus 236 i~~~~~~~~~---~~~y~g~-~~~~~i 258 (428)
+++|+++... -..|+|. ...+++
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999766421 2455555 333443
No 109
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.47 E-value=6.9e-13 Score=107.22 Aligned_cols=101 Identities=16% Similarity=0.347 Sum_probs=84.9
Q ss_pred cchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc--hhHhhhcCCCcCcEEEEEcCCCCC
Q 014216 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDS 245 (428)
Q Consensus 168 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~--~~~~~~~~v~~~P~i~~~~~~~~~ 245 (428)
.++...+ ..+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.|+.+.. ..++++|+|.++|++++|..+++.
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 4455443 6678999999999999999999999999999988888888887654 478999999999999999766666
Q ss_pred cccccCCCCHHHHHHHHHHHHhhc
Q 014216 246 PIPYEGARTAGAIESFALEQLETN 269 (428)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~~~~~ 269 (428)
...+.|....+.|..++...+...
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 677889988999999988876543
No 110
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8e-13 Score=123.87 Aligned_cols=234 Identities=23% Similarity=0.325 Sum_probs=143.6
Q ss_pred CCCCCCCCCCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCC--chhHh
Q 014216 151 SSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDS--EKSLM 225 (428)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~--~~~~~ 225 (428)
+.+...+...+++.|+..+|...+..++.-++|.||++|||+|+.++|.|+++|+.+.+ -+.++.|||.. +..+|
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 33444456689999999999999988888999999999999999999999999999876 49999999965 56899
Q ss_pred hhcCCCcCcEEEEEcCCCCC---cccccCCCCHHHHHHHHHHHHhhc------CCCCcceecCchhhhhhhcC----CCC
Q 014216 226 SKFNVQGFPTILVFGADKDS---PIPYEGARTAGAIESFALEQLETN------VAPPEVTELTSQDVMEEKCG----SAA 292 (428)
Q Consensus 226 ~~~~v~~~P~i~~~~~~~~~---~~~y~g~~~~~~i~~fi~~~~~~~------~~~~~v~~l~~~~~~~~~~~----~~~ 292 (428)
++|+|+.+|++.+|..+... -..+.|.....++...+.+.+... +..|.+-.+...+.++.+-+ ...
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~ 189 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTAN 189 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccc
Confidence 99999999999999655321 244566667778877776655443 23454444444433332221 112
Q ss_pred eEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCC
Q 014216 293 ICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSA 372 (428)
Q Consensus 293 ~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~ 372 (428)
...|.|.... ..-+...++.++ .+++..++.+.. .+....+|+..++.|..++++..+... .....
T Consensus 190 yvAiv~e~~~---s~lg~~~~l~~l-----~~~~v~vr~~~d-----~q~~~~~~l~~~~~~~~llfrnG~~q~-l~~~~ 255 (606)
T KOG1731|consen 190 YVAIVFETEP---SDLGWANLLNDL-----PSKQVGVRARLD-----TQNFPLFGLKPDNFPLALLFRNGEQQP-LWPSS 255 (606)
T ss_pred eeEEEEecCC---cccHHHHHHhhc-----cCCCcceEEEec-----chhccccccCCCCchhhhhhcCCcccc-ccccc
Confidence 2333332121 111111111111 123333555533 333345566666789988887555443 22233
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 014216 373 FELEHIVEFVKEAGRGGKGNLPLDGTP 399 (428)
Q Consensus 373 ~~~~~i~~fi~~~~~g~~~~~~~~~~p 399 (428)
.+.+...+-|.+++ |+....+..+++
T Consensus 256 ~s~~~y~~~I~~~l-g~~~~a~~pt~~ 281 (606)
T KOG1731|consen 256 SSRSAYVKKIDDLL-GDKNEASGPTLH 281 (606)
T ss_pred ccHHHHHHHHHHHh-cCccccCCCCcC
Confidence 44445555555553 223333334444
No 111
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.46 E-value=3.8e-13 Score=103.16 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=77.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCc--cccEEEEEeC--CCCCccccCCCC
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR--GFPTIKVFVP--GKPPVDYQGARD 123 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~P~~~~~~~--g~~~~~~~g~~~ 123 (428)
++++++.|+++||++|+.+.+.+.++++++++++.|+.+|+++++.+++.+|+. ++|+++++.. |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999999999999999999999999999 9999999988 555444445568
Q ss_pred cchHHHHHHHH
Q 014216 124 VKPIAEFALQQ 134 (428)
Q Consensus 124 ~~~l~~~i~~~ 134 (428)
.+.|.+|+.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 89999998753
No 112
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=2.8e-13 Score=114.62 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCCCcEEeCccchHHHhhcCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccE
Q 014216 28 SSSPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105 (428)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~ 105 (428)
....+.+++..+|...+..++ .+++|+||++||++|+.+.|.|.+++..+.. +.|+.||+++. +..|++.++||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCE
Confidence 457788999999997776554 4899999999999999999999999999875 89999999854 57899999999
Q ss_pred EEEEeCCCCCccccCC
Q 014216 106 IKVFVPGKPPVDYQGA 121 (428)
Q Consensus 106 ~~~~~~g~~~~~~~g~ 121 (428)
+++|++|+.+.++.|.
T Consensus 156 lliyk~G~~v~~ivG~ 171 (192)
T cd02988 156 ILVYRNGDIVKQFIGL 171 (192)
T ss_pred EEEEECCEEEEEEeCc
Confidence 9999999877777663
No 113
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.3e-13 Score=101.97 Aligned_cols=85 Identities=29% Similarity=0.589 Sum_probs=72.3
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHH
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAG 256 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~ 256 (428)
.+++++|.||++||++|+.+.|.|.++|.+|.+ +.|..||+++..+++++++|...|++++|+++. ....+.|. +.+
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vGa-~~~ 96 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVGA-NKA 96 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEecC-CHH
Confidence 357899999999999999999999999999998 999999999999999999999999999998654 45666665 344
Q ss_pred HHHHHHHH
Q 014216 257 AIESFALE 264 (428)
Q Consensus 257 ~i~~fi~~ 264 (428)
.+.+.+..
T Consensus 97 ~l~~~i~~ 104 (106)
T KOG0907|consen 97 ELEKKIAK 104 (106)
T ss_pred HHHHHHHh
Confidence 66555543
No 114
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.46 E-value=5.2e-13 Score=103.94 Aligned_cols=89 Identities=24% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCcEEeCccchHHHHhhcC--CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEE
Q 014216 160 NESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~ 237 (428)
..+.+++.+++.+.+.+.+ .+++|.||++||++|+.+.+.++++|+.+. .+.|+.||++.+ .++++|+|.++|+++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 4577889989988876553 799999999999999999999999999986 589999999888 999999999999999
Q ss_pred EEcCCCCCcccccC
Q 014216 238 VFGADKDSPIPYEG 251 (428)
Q Consensus 238 ~~~~~~~~~~~y~g 251 (428)
+|+++. ...++.|
T Consensus 82 ~f~~G~-~v~~~~G 94 (113)
T cd02957 82 VYKNGE-LIDNIVG 94 (113)
T ss_pred EEECCE-EEEEEec
Confidence 998654 3445555
No 115
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.7e-13 Score=113.57 Aligned_cols=102 Identities=27% Similarity=0.526 Sum_probs=87.3
Q ss_pred cEEeC-ccchHHHhhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEE
Q 014216 32 VVQLT-PNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (428)
Q Consensus 32 ~~~l~-~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~ 109 (428)
|+.++ +++|..++-.. .+.++|.||+.||++|+++.|.+..++.+|.+ ..|.+||+++.+.++..+||...||+++|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 44444 46777666443 57999999999999999999999999999987 68999999999999999999999999999
Q ss_pred eCCCCCccccCCCCcchHHHHHHHHH
Q 014216 110 VPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 110 ~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
++|..+.++.| .++..|...+.+++
T Consensus 82 ~ng~kid~~qG-Ad~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 82 RNGVKIDQIQG-ADASGLEEKVAKYA 106 (288)
T ss_pred ecCeEeeeecC-CCHHHHHHHHHHHh
Confidence 99998888887 46777877777765
No 116
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.44 E-value=5.6e-13 Score=97.54 Aligned_cols=80 Identities=26% Similarity=0.433 Sum_probs=71.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHH
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~ 130 (428)
.+..||++||++|+.+.+.+++++..++..+.+..||+++++++++++|+.++|++++ +|+ .++.|..+.+.+..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4779999999999999999999999998889999999999999999999999999875 665 478898899988888
Q ss_pred HHHH
Q 014216 131 ALQQ 134 (428)
Q Consensus 131 i~~~ 134 (428)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8653
No 117
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.44 E-value=2.4e-12 Score=99.79 Aligned_cols=82 Identities=24% Similarity=0.401 Sum_probs=72.4
Q ss_pred CCcEEeCc-cchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 160 NESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 160 ~~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
..+..+++ +++.+.+ .++.+++|+||++||++|+.+.+.+.++++.+. .+.|+.||.++...++++|+|..+|++++
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 35677777 6777665 567899999999999999999999999999986 48999999999999999999999999999
Q ss_pred EcCCC
Q 014216 239 FGADK 243 (428)
Q Consensus 239 ~~~~~ 243 (428)
|+++.
T Consensus 82 fk~G~ 86 (113)
T cd02989 82 FKNGK 86 (113)
T ss_pred EECCE
Confidence 98663
No 118
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.43 E-value=1.3e-12 Score=98.81 Aligned_cols=92 Identities=24% Similarity=0.480 Sum_probs=81.9
Q ss_pred hHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccc
Q 014216 170 FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY 249 (428)
Q Consensus 170 ~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y 249 (428)
+...+.+.++++++.|+++||+.|+.+.+.+.++++.+.+.+.++.+|+++.+++++++++.++|++++|++ ++....+
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~-g~~v~~~ 83 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKD-KELVKEI 83 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEEC-CeEEEEE
Confidence 344566788899999999999999999999999999998889999999999999999999999999999975 5567778
Q ss_pred cCCCCHHHHHHHH
Q 014216 250 EGARTAGAIESFA 262 (428)
Q Consensus 250 ~g~~~~~~i~~fi 262 (428)
.|..+.+++.+|+
T Consensus 84 ~g~~~~~~~~~~l 96 (97)
T cd02949 84 SGVKMKSEYREFI 96 (97)
T ss_pred eCCccHHHHHHhh
Confidence 8988888888775
No 119
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.42 E-value=2.1e-12 Score=102.23 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=79.3
Q ss_pred CccchHHHHh-hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEE-EEcCCC
Q 014216 166 NSSNFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL-VFGADK 243 (428)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~-~~~~~~ 243 (428)
+..++.+.+. ..+++++|.|+++||++|+.+.|.+.++|+.+.+.+.|+.||.++.++++++|+|++.|+++ +|+++.
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 3567777765 34679999999999999999999999999999988999999999999999999999777776 777543
Q ss_pred CCcccccC--------CCCHHHHHHHHHHHH
Q 014216 244 DSPIPYEG--------ARTAGAIESFALEQL 266 (428)
Q Consensus 244 ~~~~~y~g--------~~~~~~i~~fi~~~~ 266 (428)
...-...| ..+.+++.+-+...+
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 23344455 345566666555543
No 120
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.41 E-value=1.3e-12 Score=98.39 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=70.9
Q ss_pred cchHHHHhh-cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCc
Q 014216 168 SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP 246 (428)
Q Consensus 168 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~ 246 (428)
+++.+.+.. ..++++|.|+++||++|+.+.|.+.++|+.+.+.+.|+.||.++.++++++|+|+..|+.++|+++....
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 345555544 4789999999999999999999999999999877999999999999999999999999999998776544
Q ss_pred ccc
Q 014216 247 IPY 249 (428)
Q Consensus 247 ~~y 249 (428)
..|
T Consensus 83 ~d~ 85 (114)
T cd02986 83 VDY 85 (114)
T ss_pred Eec
Confidence 444
No 121
>PTZ00051 thioredoxin; Provisional
Probab=99.40 E-value=2.5e-12 Score=97.64 Aligned_cols=95 Identities=29% Similarity=0.488 Sum_probs=76.4
Q ss_pred cEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcC
Q 014216 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~ 241 (428)
+.++++.+....+.+.++++++.||++||++|+.+.+.|.++++.+. .+.|+.+|++....++++|+++++|++++|++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 45565544444455778899999999999999999999999999875 58999999999999999999999999999974
Q ss_pred CCCCcccccCCCCHHHHH
Q 014216 242 DKDSPIPYEGARTAGAIE 259 (428)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~ 259 (428)
+ +....+.|. ..++|.
T Consensus 81 g-~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 81 G-SVVDTLLGA-NDEALK 96 (98)
T ss_pred C-eEEEEEeCC-CHHHhh
Confidence 4 445566674 455543
No 122
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.40 E-value=2.6e-12 Score=123.55 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=78.8
Q ss_pred EEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEE-------------------------
Q 014216 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAAL------------------------- 86 (428)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v------------------------- 86 (428)
..+.+.+-....+.++++++|.|||+||++|++..|.+.++++.++. .+.++.|
T Consensus 41 f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~ 120 (521)
T PRK14018 41 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPK 120 (521)
T ss_pred eEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcc
Confidence 33333333323445789999999999999999999999999998873 3444433
Q ss_pred ---cCcccHhHHHHcCCccccEEEEE-eCCCCCccccCCCCcchHHHHHHH
Q 014216 87 ---DANEHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 87 ---d~~~~~~l~~~~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
+++.+..+++.|+|+++|+++++ ++|+.+..+.|..+.+.|..+|..
T Consensus 121 ~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 121 LPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 34556789999999999999777 678778889999999999998874
No 123
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.39 E-value=1e-10 Score=103.24 Aligned_cols=207 Identities=21% Similarity=0.297 Sum_probs=140.4
Q ss_pred CCCCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhH------HH-HHHHHHHHhcC-CeEEEEEeCCCchhHhhhc
Q 014216 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL------AP-EWKKAANNLKG-KVKLGHVDCDSEKSLMSKF 228 (428)
Q Consensus 157 ~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~------~~-~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~ 228 (428)
+....|..|+..++.+++ ......+|+|+.+--.. +.. .. .++-+|+-+.. .+.||.||..++..+++++
T Consensus 31 DGkDRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp SSS--CEEE-TTTHHHHH-HH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred CCccceEEcchhHHHHHH-HhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 346679999999999976 56777888888765322 222 23 33444555544 4999999999999999999
Q ss_pred CCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHHHhhcCCCCcceecCchhhhhhhcC-CCCeEEEEecCCccchhh
Q 014216 229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCG-SAAICFVSFLPDILDSKA 307 (428)
Q Consensus 229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~ 307 (428)
|+...++|.+|+.+ ..+.|.|.++++-+..|+...+. ..|..+++...++.+.. ...+.+|+|+....+
T Consensus 109 gv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~e-----dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s--- 178 (383)
T PF01216_consen 109 GVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLE-----DPVEIINNKHELKAFERIEDDIKLIGYFKSEDS--- 178 (383)
T ss_dssp T--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHS-----SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTS---
T ss_pred CccccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcc-----cchhhhcChhhhhhhhhcccceeEEEEeCCCCc---
Confidence 99999999999854 58999999999999999999973 55788888777765553 336889998865211
Q ss_pred hchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCCceEEEEeccCCcc-ccCCCCCCHHHHHHHHHHHh
Q 014216 308 EGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVY-TPLKSAFELEHIVEFVKEAG 386 (428)
Q Consensus 308 ~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~-~~~~~~~~~~~i~~fi~~~~ 386 (428)
.....+..+|..|... +.|..+- .+.+++++|+. +--+-+|.|=-... .....+.+.++|.+||+++.
T Consensus 179 ----~~yk~FeeAAe~F~p~-IkFfAtf---d~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~ 247 (383)
T PF01216_consen 179 ----EHYKEFEEAAEHFQPY-IKFFATF---DKKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK 247 (383)
T ss_dssp ----HHHHHHHHHHHHCTTT-SEEEEE----SHHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-
T ss_pred ----HHHHHHHHHHHhhcCc-eeEEEEe---cchhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhc
Confidence 2447889999999988 8888764 48999999996 56677787655554 33345789999999999883
No 124
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.38 E-value=4e-12 Score=96.29 Aligned_cols=93 Identities=19% Similarity=0.418 Sum_probs=75.7
Q ss_pred cchHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCc
Q 014216 168 SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP 246 (428)
Q Consensus 168 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~ 246 (428)
+++.+.+... +++++|.||++||++|+.+.+.+.++++.+...+.|+.+|+++..+++++|++.++|++++|+++ ...
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~ 81 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG-TIV 81 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC-EEE
Confidence 4556665444 58999999999999999999999999999877899999999999999999999999999999744 334
Q ss_pred ccccCCCCHHHHHHHH
Q 014216 247 IPYEGARTAGAIESFA 262 (428)
Q Consensus 247 ~~y~g~~~~~~i~~fi 262 (428)
.++.| .+.+.|.+.+
T Consensus 82 ~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 82 DRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEeC-CCHHHHHHhh
Confidence 44455 4566666543
No 125
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.38 E-value=1e-11 Score=105.59 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=72.6
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-----------------------hHHHHcCCcc
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----------------------SLAQEYGIRG 102 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~v~~ 102 (428)
.++++++|+||++||++|++..|.+.++.+. .+.++.|+.++++ .+++.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3688999999999999999999999988653 3566667654322 3556789999
Q ss_pred ccEEEEE-eCCCCCccccCCCCcchHHHHHHHHHHHHH
Q 014216 103 FPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKALL 139 (428)
Q Consensus 103 ~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l~~~~ 139 (428)
+|+.+++ ++|+....+.|..+.+.+..++...++...
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 9987777 577778888999999999999988876543
No 126
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.36 E-value=1.7e-11 Score=102.42 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=83.0
Q ss_pred CCCcEEeCc-cchHHHHhhcC--CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcE
Q 014216 159 SNESIELNS-SNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (428)
Q Consensus 159 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~ 235 (428)
...+.+++. ++|.+.+...+ .+++|.||++||++|+.+.+.+.++|..+. .+.|+.||++.. .++.+|+|..+|+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 566888988 89988875544 389999999999999999999999999986 699999999877 8999999999999
Q ss_pred EEEEcCCCCCcccccC-------CCCHHHHHHHHHH
Q 014216 236 ILVFGADKDSPIPYEG-------ARTAGAIESFALE 264 (428)
Q Consensus 236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~ 264 (428)
+++|+++. ....+.| .++.+.|..|+.+
T Consensus 139 lllyk~G~-~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGE-LIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCE-EEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99998653 2222322 4566666666543
No 127
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.36 E-value=2.6e-12 Score=99.06 Aligned_cols=77 Identities=16% Similarity=0.377 Sum_probs=66.2
Q ss_pred cchHHHhhcC-CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc-------cHhHHHHcCCc-
Q 014216 38 NNFKSKVLNA-NGVVLVEFYA-------PWCGHCQALTPIWEKAATVLKGVATVAALDANE-------HQSLAQEYGIR- 101 (428)
Q Consensus 38 ~~~~~~~~~~-~~~~lv~f~~-------~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~l~~~~~v~- 101 (428)
++|...+... +++++|.||| +||++|+.+.|.+++++..+++++.|+.||+++ +.++.++++|.
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 5566444433 6899999999 999999999999999999999779999999976 45899999998
Q ss_pred cccEEEEEeCCCC
Q 014216 102 GFPTIKVFVPGKP 114 (428)
Q Consensus 102 ~~P~~~~~~~g~~ 114 (428)
++||+++|..|+.
T Consensus 90 ~iPT~~~~~~~~~ 102 (119)
T cd02952 90 GVPTLLRWKTPQR 102 (119)
T ss_pred CCCEEEEEcCCce
Confidence 9999999977754
No 128
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.35 E-value=3e-12 Score=99.71 Aligned_cols=92 Identities=17% Similarity=0.364 Sum_probs=68.7
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-hHHHHcCCcc--ccEEEEEe-CCCCCc--
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-SLAQEYGIRG--FPTIKVFV-PGKPPV-- 116 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~--~P~~~~~~-~g~~~~-- 116 (428)
.+..++++++|.||++||++|+.+.|.+.+..........|+.+|.+.+. ...+.|++.+ +|+++++. +|+.+.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhh
Confidence 45567899999999999999999999998876654443456666666554 4567889886 99999995 777644
Q ss_pred -cccCCCCcchHHHHHHHH
Q 014216 117 -DYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 117 -~~~g~~~~~~l~~~i~~~ 134 (428)
...|..+...+...+...
T Consensus 94 ~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 94 INKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred ccCCCCccccccCCCHHHH
Confidence 556777777666666544
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.35 E-value=6.4e-11 Score=118.19 Aligned_cols=186 Identities=18% Similarity=0.223 Sum_probs=149.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEe-CCCC-CccccCCCCcc
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV-PGKP-PVDYQGARDVK 125 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~-~g~~-~~~~~g~~~~~ 125 (428)
+...|+.|+.+.|..|.++...+++++. +.+++.+...|..++.+++++|++...|++.++. +|+. -.+|.|...-.
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~ 444 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH 444 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH
Confidence 5557889999999999999999999985 5677888889999999999999999999999985 4433 47999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCCe-EEEEEECCCChhHhhHHHHHHHHH
Q 014216 126 PIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDL-WIVEFFAPWCGHCKKLAPEWKKAA 204 (428)
Q Consensus 126 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a 204 (428)
++..|+...+.. ...-..++.+.... +..-+++ .+-.|.+++|++|......+++++
T Consensus 445 Ef~s~i~~i~~~---------------------~~~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~ 502 (555)
T TIGR03143 445 ELNSFILALYNA---------------------AGPGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIA 502 (555)
T ss_pred hHHHHHHHHHHh---------------------cCCCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHH
Confidence 999999887641 22334555444443 3343444 566778999999999999999999
Q ss_pred HHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 014216 205 NNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 205 ~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
.... .+..-.++....++++++|+|.++|++++ ++ ...+.|..+.++|..++
T Consensus 503 ~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i---~~--~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 503 SLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV---DD--QQVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCC-CceEEEEECcccHHHHHhCCceecCEEEE---CC--EEEEeeCCCHHHHHHhh
Confidence 9865 68888888899999999999999999998 33 34567988999988875
No 130
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.33 E-value=1.2e-11 Score=95.85 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=76.3
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCC-CcccccCCCC
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGART 254 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~~ 254 (428)
..+...+|.|+++||++|+.+.+.+++++..+ +.+.|..+|.++.++++++|+++++|++++|++++. ..+.+.|...
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 34556788899999999999999999999887 679999999999999999999999999999986432 2346888888
Q ss_pred HHHHHHHHHHHH
Q 014216 255 AGAIESFALEQL 266 (428)
Q Consensus 255 ~~~i~~fi~~~~ 266 (428)
..++.+|+..-+
T Consensus 99 ~~el~~~i~~i~ 110 (113)
T cd02975 99 GYEFASLIEDIV 110 (113)
T ss_pred hHHHHHHHHHHH
Confidence 888888886543
No 131
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.32 E-value=1.3e-11 Score=94.55 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=76.9
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCC--cCcEEEEEcCCCCCcccccC-CCC
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ--GFPTILVFGADKDSPIPYEG-ART 254 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~--~~P~i~~~~~~~~~~~~y~g-~~~ 254 (428)
..++++.|+++||++|..+.+.++++|+.+++++.|+.||+++...+++.||+. ++|++++++.+.+..+.+.+ ..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 578999999999999999999999999999999999999999999999999999 99999999874333444544 458
Q ss_pred HHHHHHHHHHH
Q 014216 255 AGAIESFALEQ 265 (428)
Q Consensus 255 ~~~i~~fi~~~ 265 (428)
.+.|.+|+.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 132
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.31 E-value=3.3e-11 Score=97.96 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=64.6
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc------------HhHH-HHc---CCccccEEEEE
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH------------QSLA-QEY---GIRGFPTIKVF 109 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~v~~~P~~~~~ 109 (428)
..+++.+|+||++||++|++..|.+.+++++++- .+..|+.+.. .... ..+ ++.++|+.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 3467789999999999999999999999998853 4444444431 2333 345 78999999999
Q ss_pred eC-CCC-CccccCCCCcchHHHHHHHH
Q 014216 110 VP-GKP-PVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 110 ~~-g~~-~~~~~g~~~~~~l~~~i~~~ 134 (428)
.. |+. ...+.|..+.+.+.+.+.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 54 453 34678999998887777653
No 133
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.30 E-value=4.3e-11 Score=101.15 Aligned_cols=102 Identities=19% Similarity=0.351 Sum_probs=80.7
Q ss_pred cEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc-eEEEEEcCcc--------------------
Q 014216 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE-------------------- 90 (428)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~-------------------- 90 (428)
+..++.+.+.... -.+++++|+||++||++|+...+.+.++++++++. +.++.++++.
T Consensus 46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 4445555554222 25789999999999999999999999999998864 7788887753
Q ss_pred --cHhHHHHcCCccccEEEEEe-CCCCCccccCCCCcchHHHHHHHH
Q 014216 91 --HQSLAQEYGIRGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 91 --~~~l~~~~~v~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
+..++++|++.++|+++++. +|+.+..+.|..+.+.+.+++.+.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 45788999999999998885 565566889999999998888754
No 134
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.29 E-value=3.4e-11 Score=95.71 Aligned_cols=96 Identities=16% Similarity=0.270 Sum_probs=78.9
Q ss_pred hHHHHhhcC-CeEEEEEECCCChhHhhHHHHHH---HHHHHhcCCeEEEEEeCCCc-------------hhHhhhcCCCc
Q 014216 170 FDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWK---KAANNLKGKVKLGHVDCDSE-------------KSLMSKFNVQG 232 (428)
Q Consensus 170 ~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~f~~v~~~~~-------------~~~~~~~~v~~ 232 (428)
+..+. +.+ ++++|.|+++||++|+.+.+.+. .+.+.+.+.+.+..+|.+.+ ..++.+|++.+
T Consensus 6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 33343 456 89999999999999999999885 67777777788899987754 68999999999
Q ss_pred CcEEEEEcCC-CCCcccccCCCCHHHHHHHHHHHH
Q 014216 233 FPTILVFGAD-KDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 233 ~P~i~~~~~~-~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
+|++++|.++ ++...++.|..+.+.+..++...+
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 9999999876 566778889888888888877664
No 135
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.27 E-value=6.5e-12 Score=97.86 Aligned_cols=86 Identities=27% Similarity=0.427 Sum_probs=64.9
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhcCceEEEEEcCccc--------------------HhHHHHcCCcc
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEK---AATVLKGVATVAALDANEH--------------------QSLAQEYGIRG 102 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~---~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~v~~ 102 (428)
.++++.+++||++||++|+.+.+.+.. +...++..+.++.++++.. .++++++||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 468899999999999999999999875 4455555677777777643 36899999999
Q ss_pred ccEEEEEe-CCCCCccccCCCCcchHHHHH
Q 014216 103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~i 131 (428)
+|+++++. +|+.+.++.|..+.+.|..++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999995 677777899999999988764
No 136
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.27 E-value=3.9e-11 Score=89.76 Aligned_cols=90 Identities=37% Similarity=0.665 Sum_probs=77.6
Q ss_pred hHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccc
Q 014216 170 FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY 249 (428)
Q Consensus 170 ~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y 249 (428)
+.+.+ ...++++|.|+++||+.|..+.+.+.++++. .+.+.|+.+|++....+++++++.++|++++|+.+ +....+
T Consensus 3 ~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~~~ 79 (93)
T cd02947 3 FEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEVDRV 79 (93)
T ss_pred hHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEEEEE
Confidence 44444 3448899999999999999999999999998 66899999999999999999999999999999755 356777
Q ss_pred cCCCCHHHHHHHH
Q 014216 250 EGARTAGAIESFA 262 (428)
Q Consensus 250 ~g~~~~~~i~~fi 262 (428)
.|..+.+.|.+|+
T Consensus 80 ~g~~~~~~l~~~i 92 (93)
T cd02947 80 VGADPKEELEEFL 92 (93)
T ss_pred ecCCCHHHHHHHh
Confidence 8888888888876
No 137
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.26 E-value=4.1e-11 Score=93.92 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=75.5
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-----------hHhhhc
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----------SLMSKF 228 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----------~~~~~~ 228 (428)
..+..++.+++.+.+ .+++..+|+|+++|||+|+.+.|.+.++++.. ++.|..||.+.++ ++.+++
T Consensus 6 ~~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 456778888888876 56778999999999999999999999999983 4667777766432 455666
Q ss_pred C----CCcCcEEEEEcCCCCCcccccC-CCCHHHHHHHH
Q 014216 229 N----VQGFPTILVFGADKDSPIPYEG-ARTAGAIESFA 262 (428)
Q Consensus 229 ~----v~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi 262 (428)
+ +.++|++++|++|. ..-...| ..+.++|.+|+
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CCcccCCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHh
Confidence 5 44599999998664 3445567 45688888885
No 138
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=5.5e-11 Score=92.90 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=71.4
Q ss_pred CccchHHHhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcccHhHHHH--------cCCcccc
Q 014216 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQE--------YGIRGFP 104 (428)
Q Consensus 36 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~v~~~P 104 (428)
+++.+. .+.+++++++|.||++||+.|+.+.+.. .+++..+...+.++.+|.++.++++++ ||+.++|
T Consensus 4 ~~eal~-~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFE-KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHH-HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 344455 6677899999999999999999998743 457777766788999999988877663 5899999
Q ss_pred EEEEEeC-CCCCccccCC-----CCcchHHHHHHHH
Q 014216 105 TIKVFVP-GKPPVDYQGA-----RDVKPIAEFALQQ 134 (428)
Q Consensus 105 ~~~~~~~-g~~~~~~~g~-----~~~~~l~~~i~~~ 134 (428)
+++++.. |+.+....+. .+...+..++.+.
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 9999954 5554333222 3344666666544
No 139
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.22 E-value=9.3e-11 Score=85.67 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=70.7
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHH
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIES 260 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~ 260 (428)
.+..|+++||++|+.+.+.+.+++..+...+.+..||.++++++++++|++++|++++ ++. ..+.|..+.+.+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~---~g~--~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI---NGD--VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE---CCE--EEEecCCCHHHHHH
Confidence 4678999999999999999999999998889999999999999999999999999986 232 47789889999998
Q ss_pred HHHHH
Q 014216 261 FALEQ 265 (428)
Q Consensus 261 fi~~~ 265 (428)
++.+.
T Consensus 77 ~l~~~ 81 (82)
T TIGR00411 77 AIKKR 81 (82)
T ss_pred HHHhh
Confidence 87654
No 140
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.21 E-value=1.2e-10 Score=89.64 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=83.9
Q ss_pred eecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHH---hhcCcceEEEecCCCchhHHHHhCCCCCC
Q 014216 276 TELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEK---FKRGHYSFVWAAAGKQPDLENRVGVGGYG 352 (428)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~f~~id~~~~~~~~~~~gl~~~~ 352 (428)
++++..+.....-.+.+..+++| . .++.+.+.+.++.+|+. |+++ +.|+++|.......++.||++..+
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f--~-----~~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~ 73 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFH--D-----KDDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPAD 73 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEe--c-----chHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhH
Confidence 34555554444444556666666 2 24567799999999999 9999 999999998888899999999878
Q ss_pred CceEEEEeccCC-ccccCCCCCCHHHHHHHHHHHhcCC
Q 014216 353 YPALVALNVKKG-VYTPLKSAFELEHIVEFVKEAGRGG 389 (428)
Q Consensus 353 ~P~~~i~~~~~~-~~~~~~~~~~~~~i~~fi~~~~~g~ 389 (428)
.|++++.+...+ +|..+.+++++++|.+|++++++|+
T Consensus 74 ~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 74 LPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred CCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 999999988653 5544788999999999999999985
No 141
>PHA02125 thioredoxin-like protein
Probab=99.20 E-value=5.1e-11 Score=85.01 Aligned_cols=61 Identities=25% Similarity=0.513 Sum_probs=52.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~ 121 (428)
+++||++||++|+.+.|.|.++. +.++.||++++.+++++|+|.++||++ .|+.+.++.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 78999999999999999997653 458899999999999999999999986 56555667774
No 142
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.20 E-value=6.1e-11 Score=84.71 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=58.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCC-CcchHHHH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR-DVKPIAEF 130 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~-~~~~l~~~ 130 (428)
.|.||++||++|+.+.|.+++++++++..+.+..+| +.+.+.+||+.++|++++ +|+.+ +.|.. +.+.+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998888888887 344578899999999888 77654 66643 33555555
Q ss_pred H
Q 014216 131 A 131 (428)
Q Consensus 131 i 131 (428)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 4
No 143
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.19 E-value=1.2e-10 Score=98.63 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=80.4
Q ss_pred CCCCcEEeCccchHHHHhhcC--CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcE
Q 014216 158 DSNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~ 235 (428)
.-..+..++..+|...+.... .+++|.||++||++|+.+.+.|.++|..+. .+.|+.|+.+. ...+|++..+|+
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~---~~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ---CIPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH---hHhhCCCCCCCE
Confidence 456788999999998776553 489999999999999999999999999986 69999998754 368999999999
Q ss_pred EEEEcCCCCCcccccC-------CCCHHHHHHHHH
Q 014216 236 ILVFGADKDSPIPYEG-------ARTAGAIESFAL 263 (428)
Q Consensus 236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~ 263 (428)
+++|++|. ....+.| ..+.++|..++.
T Consensus 156 lliyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 156 ILVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 99998653 2333433 456666666654
No 144
>PTZ00062 glutaredoxin; Provisional
Probab=99.19 E-value=5.1e-10 Score=95.01 Aligned_cols=90 Identities=9% Similarity=0.066 Sum_probs=73.2
Q ss_pred CccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCC
Q 014216 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS 245 (428)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~ 245 (428)
+.+++.+.+..+...++++|+++||++|+.+.+.+.++++.+. .+.|+.||.+ |+|..+|++++|+++. .
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~-~ 74 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQ-L 74 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCE-E
Confidence 4456666654334778999999999999999999999999995 6999999865 9999999999998554 4
Q ss_pred cccccCCCCHHHHHHHHHHHH
Q 014216 246 PIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~~ 266 (428)
.-++.|. ++..+.+++.++.
T Consensus 75 i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 75 INSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred EeeeeCC-CHHHHHHHHHHHc
Confidence 5566654 6899999997765
No 145
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.15 E-value=5.4e-10 Score=111.00 Aligned_cols=96 Identities=21% Similarity=0.404 Sum_probs=77.6
Q ss_pred cchHHHh---hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcc----cHhHHHHcCCccccEEE
Q 014216 38 NNFKSKV---LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 38 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~P~~~ 107 (428)
+++++.+ ..++++++|+||++||++|+.+.+.. .++.+.+++ +.++.+|+++ +.+++++|++.++|+++
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 4555433 23578999999999999999998875 667777764 7889999875 36899999999999999
Q ss_pred EEe-CCCC--CccccCCCCcchHHHHHHHH
Q 014216 108 VFV-PGKP--PVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 108 ~~~-~g~~--~~~~~g~~~~~~l~~~i~~~ 134 (428)
+|. +|+. ..++.|..+.+++.+++++.
T Consensus 540 ~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 540 FFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 996 6665 36788999999999988764
No 146
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.8e-09 Score=84.07 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=72.7
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcc----------------cHhHHHHcCCccc
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----------------HQSLAQEYGIRGF 103 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~v~~~ 103 (428)
.+.-.++..+++|.++.|.+|.++...+ .++.+.+.+.+.++.++... ..+|++.|+++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3445689999999999999999999877 44666666767777777642 3489999999999
Q ss_pred cEEEEEe-CCCCCccccCCCCcchHHHHHHH
Q 014216 104 PTIKVFV-PGKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 104 P~~~~~~-~g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
|++++|. .|+.+....|...++++..-+.-
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999995 45668888999999987665543
No 147
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.09 E-value=5.9e-10 Score=86.07 Aligned_cols=75 Identities=19% Similarity=0.390 Sum_probs=63.9
Q ss_pred cchHHHHhhc-CCeEEEEEEC-------CCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC-------chhHhhhcCCC-
Q 014216 168 SNFDELVLKS-KDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-------EKSLMSKFNVQ- 231 (428)
Q Consensus 168 ~~~~~~~~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-------~~~~~~~~~v~- 231 (428)
.++.+.+... +++++|.|++ +||++|+.+.|.+++++..+.+++.|+.||.+. +.++..+++|.
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 4555555433 5799999999 999999999999999999998789999999876 45899999998
Q ss_pred cCcEEEEEcCC
Q 014216 232 GFPTILVFGAD 242 (428)
Q Consensus 232 ~~P~i~~~~~~ 242 (428)
++|++++|+.+
T Consensus 90 ~iPT~~~~~~~ 100 (119)
T cd02952 90 GVPTLLRWKTP 100 (119)
T ss_pred CCCEEEEEcCC
Confidence 99999999644
No 148
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.2e-10 Score=93.68 Aligned_cols=101 Identities=27% Similarity=0.455 Sum_probs=83.2
Q ss_pred CccchHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCC
Q 014216 166 NSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244 (428)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~ 244 (428)
++.+|...+... .+.++|.|++.||++|+.++|.|..+|.+|. ...|..||.++.+..+.-+||...|++++|+++.
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~- 85 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGV- 85 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCe-
Confidence 446666666433 4589999999999999999999999999995 6889999999999999999999999999998554
Q ss_pred CcccccCCCCHHHHHHHHHHHHhhc
Q 014216 245 SPIPYEGARTAGAIESFALEQLETN 269 (428)
Q Consensus 245 ~~~~y~g~~~~~~i~~fi~~~~~~~ 269 (428)
..-.+.|. +...|..-+.++....
T Consensus 86 kid~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 86 KIDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred EeeeecCC-CHHHHHHHHHHHhccC
Confidence 45666664 7778888888876543
No 149
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.09 E-value=1.4e-09 Score=91.56 Aligned_cols=87 Identities=21% Similarity=0.306 Sum_probs=69.4
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcC-----------------------cccHhHHHHcCCcc
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA-----------------------NEHQSLAQEYGIRG 102 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~v~~ 102 (428)
.++++++|+||++||++|++..|.+.++.+. .+.++.|+. |.+..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 4688999999999999999999999888763 244444443 33446778899999
Q ss_pred ccEEEEE-eCCCCCccccCCCCcchHHHHHHHHH
Q 014216 103 FPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 103 ~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
+|+.+++ ++|+....+.|..+.+.+..++.+.+
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9977777 57877778889999999999998775
No 150
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.08 E-value=5.4e-10 Score=100.16 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=70.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc---------cHhHHHHcCCccccEEEEEeC-CCCCc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------HQSLAQEYGIRGFPTIKVFVP-GKPPV 116 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~v~~~P~~~~~~~-g~~~~ 116 (428)
.++++||+||++||++|+.+.|.+.+++++++-.+..+.+|.+. +..+++++||.++|+++++.+ |+.+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 47899999999999999999999999999986444444444421 357899999999999999986 55433
Q ss_pred -cccCCCCcchHHHHHHHH
Q 014216 117 -DYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 117 -~~~g~~~~~~l~~~i~~~ 134 (428)
...|..+.+.|.+.+...
T Consensus 245 ~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 456889999888888755
No 151
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.06 E-value=1e-09 Score=82.58 Aligned_cols=66 Identities=27% Similarity=0.547 Sum_probs=54.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhc--CceEEEEEcCccc-------------------------HhHHHHcCC
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEH-------------------------QSLAQEYGI 100 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~~~-------------------------~~l~~~~~v 100 (428)
+++++|+||++||++|++..|.+.++.+.++ +++.++.|++++. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 6788888888643 267888999
Q ss_pred ccccEEEEEeCCC
Q 014216 101 RGFPTIKVFVPGK 113 (428)
Q Consensus 101 ~~~P~~~~~~~g~ 113 (428)
.++|+++++...+
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 9999999996543
No 152
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.05 E-value=6.3e-10 Score=77.67 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=51.2
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEE
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~ 108 (428)
-++.|+++||++|+++.+.+++++... +.+.+..+|.++++++++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 478999999999999999999998764 458999999999999999999999999755
No 153
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.05 E-value=4e-09 Score=87.22 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=65.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc-------------cHhHHHHcCC--ccccEEEEEe-CCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-------------HQSLAQEYGI--RGFPTIKVFV-PGKPP 115 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~v--~~~P~~~~~~-~g~~~ 115 (428)
+|.||++||++|+++.|.+.+++++++ +.+..|+.+. ...+.+.|++ .++|+.+++. +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999985 4454455442 2346778885 6999999995 45443
Q ss_pred -ccccCCCCcchHHHHHHHHHH
Q 014216 116 -VDYQGARDVKPIAEFALQQIK 136 (428)
Q Consensus 116 -~~~~g~~~~~~l~~~i~~~l~ 136 (428)
..+.|..+.+.+.+.+.+.++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 368999999999888887764
No 154
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.04 E-value=1.1e-09 Score=87.87 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=54.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC--------ceEEEEEcCccc-------------------------Hh
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--------VATVAALDANEH-------------------------QS 93 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--------~v~~~~vd~~~~-------------------------~~ 93 (428)
++++++|+|||+||++|+++.|.+.++.+.+++ .+.++.|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 589999999999999999999999998876543 367777776532 25
Q ss_pred HHHHcCCccccEEEEEeCCCC
Q 014216 94 LAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 94 l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++++|++.++|+++++...+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 788899999999999964433
No 155
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.04 E-value=7.2e-10 Score=88.40 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=63.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEc-----------------------CcccHhHHHHcCCccc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-----------------------ANEHQSLAQEYGIRGF 103 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~v~~~ 103 (428)
++++++|+||++||++|++..|.+.++.+.++ +.++.|+ ++....+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 47899999999999999999999999988763 5555444 3455678899999999
Q ss_pred cEEEEE-eCCCCCccccCCCCcchH
Q 014216 104 PTIKVF-VPGKPPVDYQGARDVKPI 127 (428)
Q Consensus 104 P~~~~~-~~g~~~~~~~g~~~~~~l 127 (428)
|+.+++ ++|+...++.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 977777 577777788898876643
No 156
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.02 E-value=2.7e-09 Score=83.18 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=77.2
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhcCceEEEEEcCc--ccHhHHHHcCCccccEEEEEeC--CCCC
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVP--GKPP 115 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~P~~~~~~~--g~~~ 115 (428)
...+++++++|+|+++||++|+.+... | .++.+.++....+..+|.+ +..+++..|++.++|+++++.. |+.+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 445678999999999999999999874 3 5577777767777778886 5678999999999999999964 6778
Q ss_pred ccccCCCCcchHHHHHHHHH
Q 014216 116 VDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 116 ~~~~g~~~~~~l~~~i~~~l 135 (428)
.+..|..+++.+...+.+.+
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 89999999999988887664
No 157
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.02 E-value=3.5e-09 Score=88.19 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=62.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEE------EEEcCcc-----------------------------c
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV------AALDANE-----------------------------H 91 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~------~~vd~~~-----------------------------~ 91 (428)
.+++.+|.|||.||++|+..+|.+.++... + +.+ ..||.++ .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~-~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--K-FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--C-CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 499999999999999999999999999653 1 333 4555543 2
Q ss_pred HhHHHHcCCccccEE-EEE-eCCCCCccccCCCCcchHHH
Q 014216 92 QSLAQEYGIRGFPTI-KVF-VPGKPPVDYQGARDVKPIAE 129 (428)
Q Consensus 92 ~~l~~~~~v~~~P~~-~~~-~~g~~~~~~~g~~~~~~l~~ 129 (428)
..+...|++.+.|+. +++ ++|+....+.|..+.+.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 256678899999887 566 56777888899999888877
No 158
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-09 Score=89.64 Aligned_cols=98 Identities=18% Similarity=0.383 Sum_probs=79.6
Q ss_pred cccccCCCCCcEEeCc-cchHHHhhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHH
Q 014216 22 SDALYGSSSPVVQLTP-NNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQE 97 (428)
Q Consensus 22 ~~~~~~~~~~~~~l~~-~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~ 97 (428)
....+.+...+.-++. +.++ +.++ ....|+|.|++.|.+.|+++.|.+.+++.++.. .+.||.||....++.+++
T Consensus 116 ~eP~y~gpe~ikyf~~~q~~d-eel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~k 194 (265)
T KOG0914|consen 116 PEPAYSGPETIKYFTNMQLED-EELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAK 194 (265)
T ss_pred CccccCCchheeeecchhhHH-HHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHh
Confidence 4445566677777744 3344 3333 456899999999999999999999999999996 489999999999999999
Q ss_pred cCCc------cccEEEEEeCCCCCccccC
Q 014216 98 YGIR------GFPTIKVFVPGKPPVDYQG 120 (428)
Q Consensus 98 ~~v~------~~P~~~~~~~g~~~~~~~g 120 (428)
|+|. ..||+++|.+|+.+.+...
T Consensus 195 fris~s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 195 FRISLSPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred eeeccCcccccCCeEEEEccchhhhcCcc
Confidence 9885 7899999999988666543
No 159
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.00 E-value=2.9e-09 Score=82.99 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=85.7
Q ss_pred EeCccchHHHhhcCCCeEEEEEECC--CChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 34 QLTPNNFKSKVLNANGVVLVEFYAP--WCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~lv~f~~~--~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
.++..+++ .........++.|... .++.+--..-++.++++++.+ ++.+++||+++++.++.+|||.++||+++|+
T Consensus 21 ~~~~~~~~-~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 21 PVSESRLD-DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred ccccccHH-HHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 45556666 4445666677766644 477777788899999999984 5999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcchHHHHHHHHH
Q 014216 111 PGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
+|+.+.+..|.++.+.+.++|.+++
T Consensus 100 dGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 100 GGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 9999999999999999999999886
No 160
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.98 E-value=3e-09 Score=85.32 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=54.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCccc------------------------HhHHHHcC
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH------------------------QSLAQEYG 99 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 99 (428)
++++++|+||++||++|++..|.+.++.+.+.+ .+.++.|+.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999888763 355555555422 46788999
Q ss_pred CccccEEEEEe-CCC
Q 014216 100 IRGFPTIKVFV-PGK 113 (428)
Q Consensus 100 v~~~P~~~~~~-~g~ 113 (428)
+.++|+++++. +|+
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 99999999996 554
No 161
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.97 E-value=3.2e-09 Score=84.14 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=68.5
Q ss_pred EeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEc---------------------CcccH
Q 014216 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD---------------------ANEHQ 92 (428)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd---------------------~~~~~ 92 (428)
.++.+.+.... ..+++++|.||++||++|+.+.|.+.++++.+. +..+.+| ++.+.
T Consensus 7 ~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (123)
T cd03011 7 TLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG 83 (123)
T ss_pred cCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence 34444455222 346899999999999999999999999887743 2222222 13456
Q ss_pred hHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHH
Q 014216 93 SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAE 129 (428)
Q Consensus 93 ~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~ 129 (428)
.++++|++.++|+++++.+++....+.|..+.+.|.+
T Consensus 84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 7999999999999999977666667888888887754
No 162
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.96 E-value=3.2e-09 Score=85.17 Aligned_cols=68 Identities=25% Similarity=0.469 Sum_probs=54.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC---ceEEEEEcCccc-------------------------HhHHHHc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH-------------------------QSLAQEY 98 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~-------------------------~~l~~~~ 98 (428)
++++++|.||++||++|+...|.+.++++.+.+ .+.++.|+.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 479999999999999999999999999888775 366666666542 2466779
Q ss_pred CCccccEEEEEeCCCC
Q 014216 99 GIRGFPTIKVFVPGKP 114 (428)
Q Consensus 99 ~v~~~P~~~~~~~g~~ 114 (428)
++.++|+++++..++.
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999964433
No 163
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.96 E-value=2.8e-09 Score=83.04 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=60.4
Q ss_pred hhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-hHhhhcCCCc--CcEEEEEcCCCCCcc---c
Q 014216 175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-SLMSKFNVQG--FPTILVFGADKDSPI---P 248 (428)
Q Consensus 175 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-~~~~~~~v~~--~P~i~~~~~~~~~~~---~ 248 (428)
...+++++|.|+++||++|+.+.+.+.+.+........|+.|+.+.++ ...+.|++.+ +|++++|..+++... .
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 356789999999999999999999999987765444556666666554 4567888876 999999976554433 3
Q ss_pred ccCCCCHHHH
Q 014216 249 YEGARTAGAI 258 (428)
Q Consensus 249 y~g~~~~~~i 258 (428)
..|..+.+..
T Consensus 96 ~~~~~~~~~f 105 (117)
T cd02959 96 KKGNPNYKYF 105 (117)
T ss_pred CCCCcccccc
Confidence 3444444433
No 164
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.95 E-value=2.9e-09 Score=78.25 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=62.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcch
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP 126 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 126 (428)
.+..-+..|+++||++|....+.+.+++..+. ++.+..+|.++.++++++|||.++|++++ +|+. .+.|..+.+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~--~~~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL--FGFGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE--EEeCCCCHHH
Confidence 46668999999999999999999999998765 58999999999999999999999999864 6764 3457554443
No 165
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.95 E-value=3.2e-09 Score=82.80 Aligned_cols=74 Identities=34% Similarity=0.608 Sum_probs=63.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhc-CceEEEEEcCccc-----------------------HhHHHHcCCcc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEH-----------------------QSLAQEYGIRG 102 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~v~~~~vd~~~~-----------------------~~l~~~~~v~~ 102 (428)
.+++++|.||++||++|+...+.+.++...+. ..+.++.|+++.+ ..+++.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 47899999999999999999999999999986 3588999999875 78899999999
Q ss_pred ccEEEEEe-CCCCCccccC
Q 014216 103 FPTIKVFV-PGKPPVDYQG 120 (428)
Q Consensus 103 ~P~~~~~~-~g~~~~~~~g 120 (428)
+|+++++. +|+.+..+.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999995 5655555554
No 166
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.93 E-value=4.3e-10 Score=93.93 Aligned_cols=107 Identities=30% Similarity=0.483 Sum_probs=93.4
Q ss_pred cccCCCCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccHhHHHHcCCcc
Q 014216 24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRG 102 (428)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~ 102 (428)
.....+..+..++.+|+. .+ -..-|+++|+++||+.|....++|...+.--.+ .+.++.||...++-|.-+|-+..
T Consensus 18 ~~~~r~s~~~~~~eenw~-~~--l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta 94 (248)
T KOG0913|consen 18 VTPRRSSKLTRIDEENWK-EL--LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA 94 (248)
T ss_pred cCccccceeEEecccchh-hh--hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe
Confidence 344455688999999999 44 367899999999999999999999998876555 58899999999999999999999
Q ss_pred ccEEEEEeCCCCCccccCCCCcchHHHHHHHH
Q 014216 103 FPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 103 ~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
.|+|+-.++|.. .+|.|.++..+++.|+...
T Consensus 95 LptIYHvkDGeF-rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 95 LPTIYHVKDGEF-RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred cceEEEeecccc-ccccCcccchhHHHHHHhh
Confidence 999999999974 8999999999999999754
No 167
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.91 E-value=2.7e-09 Score=83.06 Aligned_cols=87 Identities=28% Similarity=0.440 Sum_probs=64.2
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHH---HHHHhcCCeEEEEEeCCCc--------------------hhHhhhcCCCc
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKK---AANNLKGKVKLGHVDCDSE--------------------KSLMSKFNVQG 232 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~---~a~~~~~~~~f~~v~~~~~--------------------~~~~~~~~v~~ 232 (428)
..+++.++.|+++||++|+.+.+.+.. +...++.++.+..++++.. .++++++||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 356789999999999999999888874 5556666688888877653 35889999999
Q ss_pred CcEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 014216 233 FPTILVFGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
+|+++++..+++....+.|..+.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999976666566788999999988763
No 168
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.90 E-value=1.3e-08 Score=78.17 Aligned_cols=93 Identities=19% Similarity=0.314 Sum_probs=73.1
Q ss_pred CCeEEEEecCCccchhhhchhHHHHHHHHHHHHhh-cCcceEEEecCCCchhHHHHhCCCCCC--CceEEEEeccCCccc
Q 014216 291 AAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFK-RGHYSFVWAAAGKQPDLENRVGVGGYG--YPALVALNVKKGVYT 367 (428)
Q Consensus 291 ~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~f~~id~~~~~~~~~~~gl~~~~--~P~~~i~~~~~~~~~ 367 (428)
.+++++++..+. +...+..+.+++.++.+|++|| ++ +.|+++|.......++.||++... .|++++++..+.+|
T Consensus 15 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY- 91 (111)
T cd03073 15 KPLVVAYYNVDY-SKNPKGTNYWRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKY- 91 (111)
T ss_pred CCeEEEEEeccc-cCChhHHHHHHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCcc-
Confidence 455555543221 1234566789999999999999 68 999999998777899999999867 99999998655556
Q ss_pred cCCCCC-CHHHHHHHHHHHh
Q 014216 368 PLKSAF-ELEHIVEFVKEAG 386 (428)
Q Consensus 368 ~~~~~~-~~~~i~~fi~~~~ 386 (428)
++.+++ +.+.|.+|+++++
T Consensus 92 ~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 92 VMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCcccCCHHHHHHHHHHhC
Confidence 467888 9999999999873
No 169
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.89 E-value=6.2e-09 Score=81.16 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=53.1
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEE-eCCCCCccc
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF-VPGKPPVDY 118 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~-~~g~~~~~~ 118 (428)
.+.+++++++|+||++||++|+.+...+ .++.+..+..+.++.++.+....-....+ .++|+++|+ .+|+.+.+.
T Consensus 18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccc
Confidence 4566799999999999999999999865 34555555455555666542211111234 689999999 456666666
Q ss_pred cCCC
Q 014216 119 QGAR 122 (428)
Q Consensus 119 ~g~~ 122 (428)
.|..
T Consensus 97 ~Gy~ 100 (130)
T cd02960 97 TGRY 100 (130)
T ss_pred cccc
Confidence 6644
No 170
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.86 E-value=1.1e-08 Score=72.92 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=57.4
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCC-CCHHHHHH
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIES 260 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~ 260 (428)
.|.||++||++|+.+.+.++++++.+...+.|..+| +.+.+.++++.++|++++ +++ .. +.|. .+.+.+.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i---~G~-~~-~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV---DGE-LV-IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE---CCE-EE-EEeccCCHHHHHH
Confidence 377899999999999999999999998889998886 344578899999999999 332 22 6675 34466666
Q ss_pred HH
Q 014216 261 FA 262 (428)
Q Consensus 261 fi 262 (428)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 54
No 171
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=1.8e-08 Score=107.03 Aligned_cols=92 Identities=22% Similarity=0.353 Sum_probs=77.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc-eEEEEEcC---------------------------cccHhHHHHc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDA---------------------------NEHQSLAQEY 98 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 98 (428)
+++++||+||++||++|+...|.+.+++++++++ +.++.|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999875 66666632 2244678899
Q ss_pred CCccccEEEEE-eCCCCCccccCCCCcchHHHHHHHHHHHH
Q 014216 99 GIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKAL 138 (428)
Q Consensus 99 ~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l~~~ 138 (428)
++.++|+++++ ++|+.+.++.|....+.+.+++...+.-.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 99999999999 68887888999999999999988776543
No 172
>smart00594 UAS UAS domain.
Probab=98.85 E-value=2.4e-08 Score=78.65 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=71.1
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCc--ccHhHHHHcCCccccEEEEEeCCC----
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVPGK---- 113 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~P~~~~~~~g~---- 113 (428)
...+++|+++|+|+++||+.|+.+.... .++.+.++..+.+..+|.+ +..+++++|+++++|+++++....
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 4456788999999999999999999854 4566666666777677765 557899999999999999995432
Q ss_pred --CCccccCCCCcchHHHHH
Q 014216 114 --PPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 114 --~~~~~~g~~~~~~l~~~i 131 (428)
.+.+..|..+++.+..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 366889999999888765
No 173
>PHA02125 thioredoxin-like protein
Probab=98.82 E-value=1.9e-08 Score=71.70 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=45.3
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~ 237 (428)
++.|+++||++|+.+.+.+++++ +.++.||.+...+++++|+|.++|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 78999999999999999997653 568889998999999999999999988
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.79 E-value=4.6e-07 Score=90.06 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=132.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC-CccccCCCCcch
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP 126 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~~ 126 (428)
.+++-+.++...|..|.++...+++++.. .+++.+-..+.. ...|++.+..+|+. -.+|.|...-.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASL-SDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHh-CCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 45554544455899999999999888886 455666442211 24799988876644 579999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhh-cCCeEEEEEECCCChhHhhHHHHHHHHHH
Q 014216 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205 (428)
Q Consensus 127 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~ 205 (428)
+..|+...+. ...+-..|++..... +.. .++..+..|.++.|++|......++.++.
T Consensus 86 f~s~i~~i~~---------------------~~~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~ 143 (517)
T PRK15317 86 FTSLVLALLQ---------------------VGGHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAV 143 (517)
T ss_pred HHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 9999987763 233344555544443 333 34566889999999999999999999998
Q ss_pred HhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 206 ~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
.. ..+.+-.+|....++++++|++.++|++++ ++ ...+.|....+++...+...
T Consensus 144 ~~-~~i~~~~id~~~~~~~~~~~~v~~VP~~~i---~~--~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 144 LN-PNITHTMIDGALFQDEVEARNIMAVPTVFL---NG--EEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred hC-CCceEEEEEchhCHhHHHhcCCcccCEEEE---CC--cEEEecCCCHHHHHHHHhcc
Confidence 64 478999999999999999999999999976 22 34577888888888777553
No 175
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.79 E-value=2.8e-08 Score=89.19 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC-----------chhHhhhcCCCcCcEEEEEcCCCCCc
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-----------EKSLMSKFNVQGFPTILVFGADKDSP 246 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-----------~~~~~~~~~v~~~P~i~~~~~~~~~~ 246 (428)
+++++|.||++||++|+...+.++++++.++ +.+..|+.+. +..+++++||..+|++++++.+++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 6789999999999999999999999999986 4454454433 35689999999999999998743333
Q ss_pred -ccccCCCCHHHHHHHHHHHH
Q 014216 247 -IPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 247 -~~y~g~~~~~~i~~fi~~~~ 266 (428)
....|..+.++|.+.+....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 33458899999998887653
No 176
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.78 E-value=2.8e-08 Score=69.24 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=51.7
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
.++.|+++||++|+.+.+.+++++... +.+.|..+|.++++++++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 478899999999999999999998764 469999999999999999999999999876
No 177
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.77 E-value=4.9e-08 Score=93.44 Aligned_cols=100 Identities=21% Similarity=0.394 Sum_probs=77.1
Q ss_pred EEeCcc-chHHHhhcCCC--eEEEEEECCCChhhhhhhHHHH---HHHHHhcCceEEEEEcCccc----HhHHHHcCCcc
Q 014216 33 VQLTPN-NFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWE---KAATVLKGVATVAALDANEH----QSLAQEYGIRG 102 (428)
Q Consensus 33 ~~l~~~-~~~~~~~~~~~--~~lv~f~~~~C~~C~~~~~~~~---~~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~ 102 (428)
+.++.. +.+ ..+.+++ +++++||++||..||.+++..- +++.+..+ +...++|.+++ .++-+++|+-+
T Consensus 457 q~~s~~~~L~-~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELD-QALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHH-HHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 455554 455 3444444 9999999999999999998663 34444444 77888898754 57889999999
Q ss_pred ccEEEEEe-CCCCCccccCCCCcchHHHHHHHH
Q 014216 103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
.|++++|. +|+......|..+.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999997 666666689999999999999864
No 178
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.77 E-value=2.2e-08 Score=72.79 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=52.5
Q ss_pred HhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
.+.+++++++|+|+++||+.|+.+...+ ..+.+.+.+++.++.+|.++.....+. ...++|+++++.
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 4456799999999999999999999877 456665667789999999866543332 227799999875
No 179
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.76 E-value=6.6e-08 Score=96.29 Aligned_cols=105 Identities=21% Similarity=0.373 Sum_probs=81.1
Q ss_pred CCcEEeC-ccchHHHHh---hcCCeEEEEEECCCChhHhhHHHHH---HHHHHHhcCCeEEEEEeCCCc----hhHhhhc
Q 014216 160 NESIELN-SSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSE----KSLMSKF 228 (428)
Q Consensus 160 ~~v~~l~-~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~----~~~~~~~ 228 (428)
.....++ .+++.+.+. ..+++++|.||++||++|+.+.+.. .++.+.++ ++.+..+|.+++ ++++++|
T Consensus 452 ~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 452 LNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHc
Confidence 3455554 355555543 2367999999999999999998864 66777775 588999998753 5889999
Q ss_pred CCCcCcEEEEEcCCCCC--cccccCCCCHHHHHHHHHHH
Q 014216 229 NVQGFPTILVFGADKDS--PIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 229 ~v~~~P~i~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~ 265 (428)
++.++|++++|+.+++. ..++.|..+.+++.+++.+.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999999765554 35778999999999888764
No 180
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.76 E-value=7.7e-08 Score=78.32 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=64.2
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc------------hhHh-hhc---CCCcCcEEEEEc
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE------------KSLM-SKF---NVQGFPTILVFG 240 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~------------~~~~-~~~---~v~~~P~i~~~~ 240 (428)
..+..+|.||++||++|+...|.+++++++++ +.+..|+.+.. .... ..+ ++..+|+.+++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 34567999999999999999999999999985 44444444331 2333 344 788999999997
Q ss_pred CCCCC-cccccCCCCHHHHHHHHHHH
Q 014216 241 ADKDS-PIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 241 ~~~~~-~~~y~g~~~~~~i~~fi~~~ 265 (428)
.+++. ...+.|..+.+++...+.+.
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 66543 33578999999888776543
No 181
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.75 E-value=8.8e-08 Score=80.82 Aligned_cols=88 Identities=20% Similarity=0.397 Sum_probs=75.2
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCC----------------------chhHhhhcCCCcC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS----------------------EKSLMSKFNVQGF 233 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~----------------------~~~~~~~~~v~~~ 233 (428)
.+++++|.||++||+.|+...+.+.++++.+.+. +.+..|+++. +..+++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4678999999999999999999999999999764 8888888653 3567899999999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 014216 234 PTILVFGADKDSPIPYEGARTAGAIESFALE 264 (428)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (428)
|+++++.+++.....+.|..+.+++.+++..
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 9999998777666678899999999888754
No 182
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.75 E-value=2.4e-08 Score=77.88 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=45.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEE---cCcccHhHHHHcCCccccEE
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL---DANEHQSLAQEYGIRGFPTI 106 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~v---d~~~~~~l~~~~~v~~~P~~ 106 (428)
++++++|.||++||++|+...|.+.++++.+.+.+.++.+ +.++...+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 4789999999999999999999999999888766655555 22334456666666556653
No 183
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.74 E-value=6.7e-08 Score=93.47 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=73.8
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEE----------------------------eCCCchhHhh
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHV----------------------------DCDSEKSLMS 226 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v----------------------------~~~~~~~~~~ 226 (428)
...++++|.||++||++|+...|.+.++++.+.. .+.|..| .++.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 4678999999999999999999999999999873 4555444 3344567889
Q ss_pred hcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 014216 227 KFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 227 ~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~ 263 (428)
.|+|..+|+++++.+++.....+.|.++.++|..+|.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 9999999999998777776777899999999999987
No 184
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.74 E-value=4.8e-08 Score=77.61 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc---------------------------ccHhHHHHc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQEY 98 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~---------------------------~~~~l~~~~ 98 (428)
++++++|+||++||+.|.+..|.+.++.+++++ .+.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999985 4667666541 123577788
Q ss_pred CCccccEEEEEe-CCCCCccccCC
Q 014216 99 GIRGFPTIKVFV-PGKPPVDYQGA 121 (428)
Q Consensus 99 ~v~~~P~~~~~~-~g~~~~~~~g~ 121 (428)
++.++|+.+++. +|+.+..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999994 56656555553
No 185
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.73 E-value=1.5e-07 Score=73.48 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=84.8
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEEC--CCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEE
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFA--PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~ 237 (428)
....++..++..++ ......+++|.. ..++.+...+-++.++++.|.+ ++.|+.||.+.++.++.+|||.++|+++
T Consensus 18 g~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 34456667788776 455555555553 3467778889999999999984 5999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHHHHHHHHHh
Q 014216 238 VFGADKDSPIPYEGARTAGAIESFALEQLE 267 (428)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~ 267 (428)
+|++|. ..-...|..+.+.+.++|.+.+.
T Consensus 97 ~FkdGk-~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 97 VFTGGN-YRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EEECCE-EEEEEeCcCCHHHHHHHHHHHhc
Confidence 999654 45677898999999999998874
No 186
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.73 E-value=9.7e-08 Score=71.72 Aligned_cols=66 Identities=29% Similarity=0.633 Sum_probs=53.4
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhc--CCeEEEEEeCCCch-------------------------hHhhhcCC
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEK-------------------------SLMSKFNV 230 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~-------------------------~~~~~~~v 230 (428)
+++++++||++||++|+...+.+.++.+.+. +.+.|..|+++.+. .+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4689999999999999999999999999999 67999999877632 36777788
Q ss_pred CcCcEEEEEcCCC
Q 014216 231 QGFPTILVFGADK 243 (428)
Q Consensus 231 ~~~P~i~~~~~~~ 243 (428)
..+|+++++.+++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 8888888887544
No 187
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.73 E-value=9.3e-08 Score=74.77 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=60.7
Q ss_pred cchHHHHhhcCCeEEEEEECCCChhHhhHHH-HH--HHHHHHhcCCeEEEEEeCCCchhHhh--------hcCCCcCcEE
Q 014216 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMS--------KFNVQGFPTI 236 (428)
Q Consensus 168 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~~~~--------~~~v~~~P~i 236 (428)
+.+..+ .+.+++++|.|+++||+.|+.+.. +| .+++..+..++.++.+|.++.+++.+ .||+.++|++
T Consensus 6 eal~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 6 EAFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 334433 467889999999999999999976 45 35777777789999999888776655 3588999999
Q ss_pred EEEcCCCCCc
Q 014216 237 LVFGADKDSP 246 (428)
Q Consensus 237 ~~~~~~~~~~ 246 (428)
+++.++++..
T Consensus 85 vfl~~~G~~~ 94 (124)
T cd02955 85 VFLTPDLKPF 94 (124)
T ss_pred EEECCCCCEE
Confidence 9998776433
No 188
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.70 E-value=2.5e-07 Score=78.86 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=58.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcC------------------cccHhHHHHcCCccccEEEE
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA------------------NEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~v~~~P~~~~ 108 (428)
++++++|+||++||+.|++..|.+.++.+..+.++.++..+- ....++++.|++.++|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 578999999999999999999999998876544444433210 11347788999999999888
Q ss_pred EeCCCCCccccCCC-CcchHHHHHH
Q 014216 109 FVPGKPPVDYQGAR-DVKPIAEFAL 132 (428)
Q Consensus 109 ~~~g~~~~~~~g~~-~~~~l~~~i~ 132 (428)
+...+. ..+.|.. ..+.+.+++.
T Consensus 153 ID~~G~-I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 153 LDQDGK-IRAKGLTNTREHLESLLE 176 (189)
T ss_pred ECCCCe-EEEccCCCCHHHHHHHHH
Confidence 754333 3344543 3344444443
No 189
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.70 E-value=7.5e-08 Score=76.68 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=63.2
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe-----------------------CCCchhHhhhcCCCcC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-----------------------CDSEKSLMSKFNVQGF 233 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-----------------------~~~~~~~~~~~~v~~~ 233 (428)
..++++|.||++||+.|+...+.+.++++.++ +.+..|+ ++....+++.|++..+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36789999999999999999999999988863 5555554 3345567888999999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHH
Q 014216 234 PTILVFGADKDSPIPYEGARTAGAI 258 (428)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i 258 (428)
|+.+++.+++.....+.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9888887677666777888776643
No 190
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.68 E-value=1.3e-07 Score=81.05 Aligned_cols=91 Identities=10% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc-----------ccHhHHHHcCCc-------------
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLAQEYGIR------------- 101 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~-----------~~~~l~~~~~v~------------- 101 (428)
++++++|.||++||++|++..|.+.++.+++++ .+.++.|+|+ +...+++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 478999999999999999999999999999986 4888888873 123455555431
Q ss_pred -----------------------ccc---EEEEE-eCCCCCccccCCCCcchHHHHHHHHHHH
Q 014216 102 -----------------------GFP---TIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKA 137 (428)
Q Consensus 102 -----------------------~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l~~ 137 (428)
.+| +.+++ ++|+.+.++.|..+.+.+...|.+.+..
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 112 34455 6677778888888888888888877644
No 191
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.68 E-value=1.3e-07 Score=82.53 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc-eEEEEEcCcc-----------cHhHH-HHcCC-------------
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE-----------HQSLA-QEYGI------------- 100 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~-----------~~~l~-~~~~v------------- 100 (428)
++++++|.||++||+.|+...|.+.++.++++++ +.++.|+++. ..+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 4789999999999999999999999999999864 7888888741 12332 23221
Q ss_pred ---------------------ccccEEEEE-eCCCCCccccCCCCcchHHHHHHHHH
Q 014216 101 ---------------------RGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 101 ---------------------~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
++.|+.+++ ++|+.+.+|.|..+.+.+...|.+.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 234777777 66777889999999988888887765
No 192
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.67 E-value=3.4e-07 Score=69.02 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=76.0
Q ss_pred EeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCC
Q 014216 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK 243 (428)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~ 243 (428)
.+++....+.+.....+++|.|+.++|. .....|.++|..+++.+.|+.+. +.++++++++.. |++++|++..
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc
Confidence 4555444444457788999999998664 68999999999999889999863 577888888765 9999998766
Q ss_pred CCcccccCCCCHHHHHHHHHH
Q 014216 244 DSPIPYEGARTAGAIESFALE 264 (428)
Q Consensus 244 ~~~~~y~g~~~~~~i~~fi~~ 264 (428)
+.+..|.|..+.++|.+|+..
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHh
Confidence 678889999999999999865
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.66 E-value=2.2e-06 Score=85.18 Aligned_cols=178 Identities=13% Similarity=0.193 Sum_probs=132.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC-CccccCCCCcch
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP 126 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~~ 126 (428)
+...|+.|.. .|..|.++...+++++.. .+++.+...+.+. ...|++.+..+|+. -.+|.|...-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASL-SDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHh-CCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 4444555555 799999999999888875 4567765444322 34599988877653 579999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhh-cCCeEEEEEECCCChhHhhHHHHHHHHHH
Q 014216 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205 (428)
Q Consensus 127 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~ 205 (428)
+..|+...+. ...+-..|+++..... .. ..+..+-.|.++.|++|......++.++.
T Consensus 87 f~s~i~~i~~---------------------~~~~~~~l~~~~~~~~-~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~ 144 (515)
T TIGR03140 87 FTSLVLAILQ---------------------VGGHGPKLDEGIIDRI-RRLNGPLHFETYVSLTCQNCPDVVQALNQMAL 144 (515)
T ss_pred HHHHHHHHHH---------------------hcCCCCCCCHHHHHHH-HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999987763 2333455655554433 33 34567889999999999999999999998
Q ss_pred HhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 206 ~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
... .+..-.+|....++++++|++.++|++++ ++ ...+.|....+++...+...
T Consensus 145 ~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i---~~--~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 145 LNP-NISHTMIDGALFQDEVEALGIQGVPAVFL---NG--EEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred hCC-CceEEEEEchhCHHHHHhcCCcccCEEEE---CC--cEEEecCCCHHHHHHHHhhc
Confidence 865 68888899999999999999999999987 22 24577888888886666544
No 194
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.65 E-value=1.3e-07 Score=77.23 Aligned_cols=77 Identities=25% Similarity=0.478 Sum_probs=60.8
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcCc-eEEEEEcCcc---------------------cHhHHHHcCCc--
Q 014216 47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKGV-ATVAALDANE---------------------HQSLAQEYGIR-- 101 (428)
Q Consensus 47 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~---------------------~~~l~~~~~v~-- 101 (428)
++++++|.||+. ||++|+...|.+.++.+.++++ +.++.|..+. +..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 589999999999 9999999999999999886653 6776666543 23788899988
Q ss_pred -------cccEEEEE-eCCCCCccccCCCC
Q 014216 102 -------GFPTIKVF-VPGKPPVDYQGARD 123 (428)
Q Consensus 102 -------~~P~~~~~-~~g~~~~~~~g~~~ 123 (428)
++|+++++ ++|+....+.|...
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99998888 55655555666555
No 195
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.64 E-value=3e-07 Score=78.23 Aligned_cols=88 Identities=14% Similarity=0.236 Sum_probs=70.3
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-----------------------hHhhhcCCCcC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----------------------SLMSKFNVQGF 233 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----------------------~~~~~~~v~~~ 233 (428)
..++++|.||++||++|+...+.+.++++. .+.+..|+.+++. .+...|++..+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 567899999999999999999999988653 4667777654332 23447889999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHHh
Q 014216 234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267 (428)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~ 267 (428)
|+.+++..++.....+.|..+.+.+..++...+.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999998777777888899999999888877763
No 196
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.64 E-value=2.1e-07 Score=78.37 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=69.0
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeC-----------------------CCchhHhhhcCCCcC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-----------------------DSEKSLMSKFNVQGF 233 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-----------------------~~~~~~~~~~~v~~~ 233 (428)
.+++++|.||++||+.|+...+.++++++. .+.+..|+. +....+.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 467999999999999999999999888764 244444442 333456778899999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHH
Q 014216 234 PTILVFGADKDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
|+.+++.+++.....+.|..+.+++..++.+.+
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 998888777766677789999999999988775
No 197
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.63 E-value=2e-07 Score=68.52 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=62.0
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHH
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (428)
+++.+..|+++||++|....+.+.++++.+. .+.+..+|.+..++++++|||.++|++++ ++ ...+.|..+.++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi---dG--~~~~~G~~~~~e 85 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL---NG--ELFGFGRMTLEE 85 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE---CC--EEEEeCCCCHHH
Confidence 4567889999999999999999999998764 69999999999999999999999999975 23 244567666555
Q ss_pred H
Q 014216 258 I 258 (428)
Q Consensus 258 i 258 (428)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 198
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.63 E-value=2.6e-07 Score=74.33 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=54.5
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC--------CeEEEEEeCCCc-------------------------hh
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSE-------------------------KS 223 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~-------------------------~~ 223 (428)
.+++++|+|+++||++|+...|.+.++.+++.+ .+.+..|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999998876653 377777776542 14
Q ss_pred HhhhcCCCcCcEEEEEcCCC
Q 014216 224 LMSKFNVQGFPTILVFGADK 243 (428)
Q Consensus 224 ~~~~~~v~~~P~i~~~~~~~ 243 (428)
++++|++.++|+++++.+++
T Consensus 104 l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCCCEEEEECCCC
Confidence 67788899999999998665
No 199
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.62 E-value=2.3e-07 Score=74.28 Aligned_cols=68 Identities=24% Similarity=0.543 Sum_probs=55.3
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCc------------------------hhHhhhcC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE------------------------KSLMSKFN 229 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~------------------------~~~~~~~~ 229 (428)
.+++++|.||++||+.|+...+.+.++.+.+++ .+.+..|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 357899999999999999999999999988864 466666665533 35778899
Q ss_pred CCcCcEEEEEcCCCC
Q 014216 230 VQGFPTILVFGADKD 244 (428)
Q Consensus 230 v~~~P~i~~~~~~~~ 244 (428)
+..+|+++++.++++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999976653
No 200
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.60 E-value=2.3e-07 Score=72.18 Aligned_cols=74 Identities=27% Similarity=0.543 Sum_probs=62.9
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhc-CCeEEEEEeCCCc-----------------------hhHhhhcCCCcC
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLK-GKVKLGHVDCDSE-----------------------KSLMSKFNVQGF 233 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~~~f~~v~~~~~-----------------------~~~~~~~~v~~~ 233 (428)
++++++.|+++||+.|+...+.+.++...+. ..+.++.|+++.. ..+.+.|++..+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6789999999999999999999999999996 3699999998875 778999999999
Q ss_pred cEEEEEcCCCCCcccccC
Q 014216 234 PTILVFGADKDSPIPYEG 251 (428)
Q Consensus 234 P~i~~~~~~~~~~~~y~g 251 (428)
|+++++.+++.....|.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999999766655444443
No 201
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.59 E-value=7.1e-07 Score=69.45 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=75.2
Q ss_pred hhcCCeEEEEEECCCChhHhhHHH-HH--HHHHHHhcCCeEEEEEeCCC--chhHhhhcCCCcCcEEEEEcC-CCCCccc
Q 014216 175 LKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVFGA-DKDSPIP 248 (428)
Q Consensus 175 ~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~--~~~~~~~~~v~~~P~i~~~~~-~~~~~~~ 248 (428)
...+++.+|+|+++||+.|+.+.. +| .++.+.+..++.+..+|.++ ...++..|++.++|+++++.+ ++....+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 345789999999999999999876 45 55777777777777777753 457899999999999999987 6766778
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 014216 249 YEGARTAGAIESFALEQL 266 (428)
Q Consensus 249 y~g~~~~~~i~~fi~~~~ 266 (428)
..|..+++++.+.+.+.+
T Consensus 94 ~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 94 WSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EcCCCCHHHHHHHHHHHH
Confidence 899999999988887764
No 202
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.58 E-value=3.7e-07 Score=73.13 Aligned_cols=67 Identities=27% Similarity=0.508 Sum_probs=54.7
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC---CeEEEEEeCCCc-------------------------hhHhhhc
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE-------------------------KSLMSKF 228 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~-------------------------~~~~~~~ 228 (428)
.+++++|.|+++||++|+...+.++++++.+++ .+.+..|+.+.+ ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999999999999999999988875 466776765543 2456679
Q ss_pred CCCcCcEEEEEcCCC
Q 014216 229 NVQGFPTILVFGADK 243 (428)
Q Consensus 229 ~v~~~P~i~~~~~~~ 243 (428)
++.++|+++++..++
T Consensus 96 ~v~~iPt~~lid~~G 110 (132)
T cd02964 96 KVEGIPTLVVLKPDG 110 (132)
T ss_pred CCCCCCEEEEECCCC
Confidence 999999999997655
No 203
>PLN02412 probable glutathione peroxidase
Probab=98.55 E-value=2.9e-07 Score=76.82 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=68.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc-eEEEEEcCcc-------c-Hh----HHHHcC--------------
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANE-------H-QS----LAQEYG-------------- 99 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~-------~-~~----l~~~~~-------------- 99 (428)
.+++++|.||++||+.|++..|.+.++.++++++ +.++.|+++. . .+ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 4789999999999999999999999999999964 8888888741 1 11 123322
Q ss_pred --------------------CccccEEEEE-eCCCCCccccCCCCcchHHHHHHHHHH
Q 014216 100 --------------------IRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIK 136 (428)
Q Consensus 100 --------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l~ 136 (428)
+.+.|+.+++ ++|+.+.++.|..+.+.+...|.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 2334777777 667778888999999988888887753
No 204
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.55 E-value=5.2e-07 Score=71.34 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=62.5
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe---------------------CCCchhHhhhcCCCcCcE
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD---------------------CDSEKSLMSKFNVQGFPT 235 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~---------------------~~~~~~~~~~~~v~~~P~ 235 (428)
..++++|.|+++||+.|+...+.+.++++.+. +....++ ++.+..++++|++.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 34789999999999999999999998887742 2111111 134567999999999999
Q ss_pred EEEEcCCCCCcccccCCCCHHHHHH
Q 014216 236 ILVFGADKDSPIPYEGARTAGAIES 260 (428)
Q Consensus 236 i~~~~~~~~~~~~y~g~~~~~~i~~ 260 (428)
++++..++ ....+.|..+.+.|.+
T Consensus 97 ~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 97 IVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEcCCC-eEEEEeccCCHHHHHh
Confidence 99998766 6667788888887754
No 205
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-07 Score=77.05 Aligned_cols=86 Identities=23% Similarity=0.508 Sum_probs=70.0
Q ss_pred CCCCcEEeCc-cchHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCC---
Q 014216 158 DSNESIELNS-SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQ--- 231 (428)
Q Consensus 158 ~~~~v~~l~~-~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~--- 231 (428)
.+..+..++. +.+++.+..+ ...|+|.|++.|.+.|.+..|.|.+++.+|.. .+.||.||....++.+++|+|+
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 4556777744 4444444333 34899999999999999999999999999977 5999999999999999999876
Q ss_pred ---cCcEEEEEcCCC
Q 014216 232 ---GFPTILVFGADK 243 (428)
Q Consensus 232 ---~~P~i~~~~~~~ 243 (428)
+.|++++|..+.
T Consensus 202 ~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGK 216 (265)
T ss_pred ccccCCeEEEEccch
Confidence 589999997654
No 206
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.4e-07 Score=74.33 Aligned_cols=170 Identities=16% Similarity=0.258 Sum_probs=110.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcch
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP 126 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 126 (428)
+.+..++.||++||..|.++...+..+++.. .++.|++++.+..++++..+.+...|+..++..|+.+.+..|......
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 6889999999999999999999999999998 568999999999999999999999999999988888777777655443
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc---cchHHHHhhc-CCeEEEEEE-----CCCChhHhhHH
Q 014216 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS---SNFDELVLKS-KDLWIVEFF-----APWCGHCKKLA 197 (428)
Q Consensus 127 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~~~~~~~-~~~~~v~f~-----~~~c~~c~~~~ 197 (428)
...+-. ...... .+. ..+..+.+.+... ....+.+... +.-.++.|. .|.|+.++.+.
T Consensus 95 ~~~~~~-~~~~~~--------~~~----~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v 161 (227)
T KOG0911|consen 95 VSKVEK-LAESGS--------ASL----GMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV 161 (227)
T ss_pred HHHHHH-hhhhcc--------ccc----CCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence 333221 111100 000 0001111111100 0122222221 222344555 36788888877
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCchhHhhhcC-CCcCcEE
Q 014216 198 PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN-VQGFPTI 236 (428)
Q Consensus 198 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~-v~~~P~i 236 (428)
..++.. .+.|+..|.-+++++.+-.+ .+.+||+
T Consensus 162 ~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTf 195 (227)
T KOG0911|consen 162 GILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTF 195 (227)
T ss_pred HHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCc
Confidence 777653 46688888888888766554 2334443
No 207
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.50 E-value=7.2e-07 Score=69.48 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=42.1
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC---chhHhhhcCCCcCcE
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---EKSLMSKFNVQGFPT 235 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---~~~~~~~~~v~~~P~ 235 (428)
..++++|.||++||+.|+...+.++++++.+.+.+.+..+..+. ...+++++++..+|.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~ 81 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPY 81 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcE
Confidence 36789999999999999999999999999887767666553111 123445555544443
No 208
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.48 E-value=7.9e-07 Score=69.50 Aligned_cols=73 Identities=38% Similarity=0.727 Sum_probs=64.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc-ccHhHHHHcC--CccccEEEEEeCCCCCccccC
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYG--IRGFPTIKVFVPGKPPVDYQG 120 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--v~~~P~~~~~~~g~~~~~~~g 120 (428)
++++++.||++||++|+.+.|.+.++++.+...+.+..+|.. ..+.+...++ +..+|++.++.++.......+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 789999999999999999999999999999877889999997 7899999999 999999998888866444444
No 209
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.47 E-value=5.6e-06 Score=65.58 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=85.1
Q ss_pred CCcEEeCccchHHHHhhcCCeEEEEEECCC--Chh-H-hhHHHHHHHHHHHhcCC-eEEEEEeCCCchhHhhhcCCC--c
Q 014216 160 NESIELNSSNFDELVLKSKDLWIVEFFAPW--CGH-C-KKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQ--G 232 (428)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~-c-~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~~~~~v~--~ 232 (428)
+.+++|++++..+..=..+...+|.|...- |.. + ......+.++|+.|+++ +.|+.+|.+....+.+.||+. .
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 467888887775533234667788887531 211 1 46788999999999999 999999999888899999985 4
Q ss_pred CcEEEEEcCCCCCcccccCCCCHHHHHHHHHHHHhhcC
Q 014216 233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270 (428)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~ 270 (428)
+|++++++..+.....+.|+++.++|.+|+.+.+....
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 89999997654323337799999999999999986554
No 210
>smart00594 UAS UAS domain.
Probab=98.47 E-value=2.3e-06 Score=67.30 Aligned_cols=97 Identities=9% Similarity=0.155 Sum_probs=72.1
Q ss_pred CccchHHHHhhcCCeEEEEEECCCChhHhhHHHH-H--HHHHHHhcCCeEEEEEeCCCc--hhHhhhcCCCcCcEEEEEc
Q 014216 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPE-W--KKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFG 240 (428)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~~a~~~~~~~~f~~v~~~~~--~~~~~~~~v~~~P~i~~~~ 240 (428)
+-++..+......+..+|+|+++||+.|..+... | .++.+.+..++.+..+|.++. ..++.+|++.++|+++++.
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 3334333444567799999999999999998775 3 456666766777777776544 4789999999999999997
Q ss_pred CCCC-----CcccccCCCCHHHHHHHH
Q 014216 241 ADKD-----SPIPYEGARTAGAIESFA 262 (428)
Q Consensus 241 ~~~~-----~~~~y~g~~~~~~i~~fi 262 (428)
.+++ ...+..|..+++++..++
T Consensus 95 ~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 95 PRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCCCceeEEEeccccCCCCHHHHHHhh
Confidence 6542 245678999999988764
No 211
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.45 E-value=9e-07 Score=72.90 Aligned_cols=87 Identities=22% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc-----------ccHhHHHH-cCC-------------
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLAQE-YGI------------- 100 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~-----------~~~~l~~~-~~v------------- 100 (428)
++++++|.||++||++|++..|.+.++.+.+++ .+.++.++|+ .-..++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 478899999999999999999999999999986 5888888862 11233432 222
Q ss_pred -------------ccccE----EEEE-eCCCCCccccCCCCcchHHHHHHH
Q 014216 101 -------------RGFPT----IKVF-VPGKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 101 -------------~~~P~----~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
.+.|+ .+++ ++|+....+.|..+.+.+...|.+
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 13564 4555 667778888898888877776654
No 212
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.45 E-value=3.9e-07 Score=72.48 Aligned_cols=67 Identities=28% Similarity=0.568 Sum_probs=55.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCc---eEEEEEcCccc-------------------------HhHHHHc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV---ATVAALDANEH-------------------------QSLAQEY 98 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~-------------------------~~l~~~~ 98 (428)
+++.+.++|.+.||++|+.|-|.+.++.+....+ +.++-|+-|.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999998875 55554554432 2788999
Q ss_pred CCccccEEEEEeCCC
Q 014216 99 GIRGFPTIKVFVPGK 113 (428)
Q Consensus 99 ~v~~~P~~~~~~~g~ 113 (428)
+|.++|++++.....
T Consensus 112 ~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGIPALVILKPDG 126 (157)
T ss_pred ccCcCceeEEecCCC
Confidence 999999999986544
No 213
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.45 E-value=1.4e-06 Score=68.10 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.7
Q ss_pred hhcCCeEEEEEECCCChhHhhHHHHH---HHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccC
Q 014216 175 LKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEG 251 (428)
Q Consensus 175 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g 251 (428)
...+++++|.|+++||++|+.+...+ .++++....++..+.++.+..+.-....+ ..+|+++++.++++...+..|
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccccc
Confidence 45788999999999999999998865 44566665556555666543221222344 578999999877765555555
Q ss_pred C
Q 014216 252 A 252 (428)
Q Consensus 252 ~ 252 (428)
.
T Consensus 99 y 99 (130)
T cd02960 99 R 99 (130)
T ss_pred c
Confidence 3
No 214
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.44 E-value=1.8e-06 Score=71.67 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=66.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc-------------hhHhhhcCC--CcCcEEEEEcCCCCCc
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE-------------KSLMSKFNV--QGFPTILVFGADKDSP 246 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~-------------~~~~~~~~v--~~~P~i~~~~~~~~~~ 246 (428)
+|.||++||++|+...+.+++++++++ +.+..|+.+.. ..+...|++ ..+|+.+++..++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 788999999999999999999999985 55555554422 236678884 6899999998776543
Q ss_pred -ccccCCCCHHHHHHHHHHHHh
Q 014216 247 -IPYEGARTAGAIESFALEQLE 267 (428)
Q Consensus 247 -~~y~g~~~~~~i~~fi~~~~~ 267 (428)
..+.|..+.+++...+...+.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 368899999999888877753
No 215
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.41 E-value=9.5e-07 Score=62.66 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=51.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHh----HHHHcCCccccEEEEEeCCCCCccccCCCCcchH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI 127 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l 127 (428)
+..|+++||++|+.+.+.|.+ ..+.+..+|+++++. +++.+++.++|++++. |+. ..| .+++.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 578999999999999988865 237788889887654 5677999999998763 432 445 466777
Q ss_pred HHHH
Q 014216 128 AEFA 131 (428)
Q Consensus 128 ~~~i 131 (428)
.+++
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 6665
No 216
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.41 E-value=1.3e-06 Score=93.09 Aligned_cols=91 Identities=16% Similarity=0.333 Sum_probs=76.2
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeC---------------------------CCchhHhhhc
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDC---------------------------DSEKSLMSKF 228 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~---------------------------~~~~~~~~~~ 228 (428)
..++++|.||++||++|+...|.+++++++|+++ +.+..|.+ +....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4689999999999999999999999999999875 77766642 1233577889
Q ss_pred CCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHHHh
Q 014216 229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267 (428)
Q Consensus 229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~ 267 (428)
++..+|+++++.++++...++.|....+.+..++...+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 999999999997777777778899999999999888765
No 217
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.40 E-value=3.1e-06 Score=71.12 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=55.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc-----------------------------cHhHHH
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-----------------------------HQSLAQ 96 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-----------------------------~~~l~~ 96 (428)
.++++||+||++||+.|....+.+.++..++++ ++.++.|.++. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 678999999999999999999999999999974 57788777642 225677
Q ss_pred HcCCccccEEEEEe-CCC
Q 014216 97 EYGIRGFPTIKVFV-PGK 113 (428)
Q Consensus 97 ~~~v~~~P~~~~~~-~g~ 113 (428)
.|++...|+++++. +|+
T Consensus 104 ~~~v~~~P~~~lid~~G~ 121 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK 121 (171)
T ss_pred HcCCCcCCcEEEECCCCe
Confidence 88999999999995 454
No 218
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.39 E-value=1.1e-06 Score=72.25 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~ 89 (428)
.+++++|.||++||+ |....|.+.++.+++++ .+.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 99999999999999975 4778888753
No 219
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.38 E-value=1.5e-06 Score=59.55 Aligned_cols=60 Identities=45% Similarity=0.914 Sum_probs=52.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHH---HcCCccccEEEEEeCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ---EYGIRGFPTIKVFVPG 112 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~v~~~P~~~~~~~g 112 (428)
++.||++||++|+++.+.+.++ ......+.+..++++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 5556679999999998877665 7899999999998876
No 220
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.35 E-value=6.6e-06 Score=59.96 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=81.7
Q ss_pred CcceecCchhhhhhhcCC-CCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCc-ceEEEecCCCchhHHH----Hh
Q 014216 273 PEVTELTSQDVMEEKCGS-AAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGH-YSFVWAAAGKQPDLEN----RV 346 (428)
Q Consensus 273 ~~v~~l~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~f~~id~~~~~~~~~----~~ 346 (428)
|.+.+++.++.++.+... ....+++|.+..+. .--+++++++++|+.+++.+ +.|+|||....|-+.. .|
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dp----dG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF 76 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDP----DGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTF 76 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCc----cHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhc
Confidence 346678888888888743 46778888766332 33468899999999999765 9999999998886554 56
Q ss_pred CCCCCCCceEEEEeccCCc--cccCCCC---CCHHHHHHHHHHHh
Q 014216 347 GVGGYGYPALVALNVKKGV--YTPLKSA---FELEHIVEFVKEAG 386 (428)
Q Consensus 347 gl~~~~~P~~~i~~~~~~~--~~~~~~~---~~~~~i~~fi~~~~ 386 (428)
|+.- .-|++.+.+..... |...+++ -+.++|+.||++++
T Consensus 77 ~IDl-~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 77 GIDL-FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred Cccc-CCCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 7664 36999999887544 5555443 78899999999874
No 221
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.35 E-value=4.2e-05 Score=76.73 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=135.8
Q ss_pred hHHHHhhcCC-eEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCC-CCcc
Q 014216 170 FDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK-DSPI 247 (428)
Q Consensus 170 ~~~~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~-~~~~ 247 (428)
+...+.+-.+ +.++.|..+.|..|..+...+++++ .+.+++.+-..|..++++++++|++...|++.+++.++ ..-+
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 4444444344 4677888888999999999999999 56678888888888889999999999999999995333 3348
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCcceecCchhhhhhhcC-CCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhc
Q 014216 248 PYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCG-SAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKR 326 (428)
Q Consensus 248 ~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 326 (428)
+|.|--.-.++.+|+...+......+.+ . ++..+.+.. +++..+-.|+...+...+ .....+.++|...+
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~~~~~~~~~l---~-~~~~~~i~~~~~~~~i~v~~~~~C~~Cp----~~~~~~~~~~~~~~- 506 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALYNAAGPGQPL---G-EELLEKIKKITKPVNIKIGVSLSCTLCP----DVVLAAQRIASLNP- 506 (555)
T ss_pred EEEecCccHhHHHHHHHHHHhcCCCCCC---C-HHHHHHHHhcCCCeEEEEEECCCCCCcH----HHHHHHHHHHHhCC-
Confidence 9999877888899987776544433333 2 222222221 234444444433344443 34466777777655
Q ss_pred CcceEEEecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHH
Q 014216 327 GHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFV 382 (428)
Q Consensus 327 ~~~~f~~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi 382 (428)
. +..-.++....++++++|++.. .|++++ + +.. .+.|..+.++|..||
T Consensus 507 ~-i~~~~i~~~~~~~~~~~~~v~~--vP~~~i-~--~~~--~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 N-VEAEMIDVSHFPDLKDEYGIMS--VPAIVV-D--DQQ--VYFGKKTIEEMLELI 554 (555)
T ss_pred C-ceEEEEECcccHHHHHhCCcee--cCEEEE-C--CEE--EEeeCCCHHHHHHhh
Confidence 3 8888899999999999999986 999955 3 222 244767888888876
No 222
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.34 E-value=2.5e-06 Score=60.81 Aligned_cols=72 Identities=24% Similarity=0.531 Sum_probs=55.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccC-CCCcchHHHHHH
Q 014216 54 EFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG-ARDVKPIAEFAL 132 (428)
Q Consensus 54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 132 (428)
.+++++|++|..+...+.+++..++ +.+-.++....+++ .+||+.++|++++ +|+ ..+.| ..+.+.+..||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHhC
Confidence 3478889999999999999999884 66666777666666 9999999999854 675 56888 777888887763
No 223
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.34 E-value=2.8e-06 Score=67.41 Aligned_cols=75 Identities=12% Similarity=0.220 Sum_probs=56.8
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCC-----C----------------------chhHhhhc
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD-----S----------------------EKSLMSKF 228 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~-----~----------------------~~~~~~~~ 228 (428)
..++++|.||+.||+.|....+.++++.+.+.+ .+.+..|+.. . ...+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457999999999999999999999999999986 4777777541 1 22356667
Q ss_pred CCCcCcEEEEEcCCCCCcccccC
Q 014216 229 NVQGFPTILVFGADKDSPIPYEG 251 (428)
Q Consensus 229 ~v~~~P~i~~~~~~~~~~~~y~g 251 (428)
++..+|+.+++.+++.....+.|
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEec
Confidence 88888888888766654444444
No 224
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.33 E-value=2.8e-06 Score=73.52 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc---------ccHhHHHHcCCccccEEEEEeCCC-C-C
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN---------EHQSLAQEYGIRGFPTIKVFVPGK-P-P 115 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~P~~~~~~~g~-~-~ 115 (428)
.++..|++||.+.|++|+.+.|.+..++..++=.+..+.+|.. .+..+++++||..+|+++++..+. . .
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 4889999999999999999999999999999755555555532 457899999999999999997654 2 3
Q ss_pred ccccCCCCcchHHHH
Q 014216 116 VDYQGARDVKPIAEF 130 (428)
Q Consensus 116 ~~~~g~~~~~~l~~~ 130 (428)
..-.|..+.++|.+-
T Consensus 199 pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 199 PVSQGFMSLDELEDR 213 (215)
T ss_pred EEeeecCCHHHHHHh
Confidence 344788888877653
No 225
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.27 E-value=1.4e-05 Score=60.73 Aligned_cols=96 Identities=11% Similarity=0.223 Sum_probs=73.0
Q ss_pred cEEeCccc-hHHHHhh-cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 162 SIELNSSN-FDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 162 v~~l~~~~-~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
+..++... +..+ .. .+...+|.|+.+.- ......|.++|..++..+.|+.. .+.++.+.+++. .|+++++
T Consensus 2 v~~i~~~~~~e~~-~~~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAF-ENIEDDIKLIGYFKSED---SEHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHH-hcccCCeEEEEEECCCC---CHHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEe
Confidence 34564444 5554 45 67788888887532 46788999999999999999874 566778888887 4999999
Q ss_pred cCCCCCcccc-cCCCCHHHHHHHHHHH
Q 014216 240 GADKDSPIPY-EGARTAGAIESFALEQ 265 (428)
Q Consensus 240 ~~~~~~~~~y-~g~~~~~~i~~fi~~~ 265 (428)
+..++....| .|..+.+.|..||..+
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 7645666779 7888999999999765
No 226
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.26 E-value=3e-05 Score=58.68 Aligned_cols=105 Identities=21% Similarity=0.430 Sum_probs=80.0
Q ss_pred CCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHH-HHhcC--CeEEEEEeCCC-----chhHhhhcCC
Q 014216 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAA-NNLKG--KVKLGHVDCDS-----EKSLMSKFNV 230 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a-~~~~~--~~~f~~v~~~~-----~~~~~~~~~v 230 (428)
....+.|++-+|.+.+ ...+.++|.|-..+ +--+.+..|.++| +.... .+-++.|-+.. +.+++++|++
T Consensus 3 ~~G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 3 CKGCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp STTSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred cCceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 3467899999999987 56688999997643 2256788999999 44333 58888886543 5789999999
Q ss_pred --CcCcEEEEEcCCCCCcccc--cCCCCHHHHHHHHHHHH
Q 014216 231 --QGFPTILVFGADKDSPIPY--EGARTAGAIESFALEQL 266 (428)
Q Consensus 231 --~~~P~i~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~ 266 (428)
..+|.+.+|..+.+.++.| .|+++.++|..|+..+.
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 4689999999788889999 89999999999999884
No 227
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.24 E-value=4.5e-06 Score=60.59 Aligned_cols=65 Identities=34% Similarity=0.570 Sum_probs=51.3
Q ss_pred hhcCCeEEEEEECCCChhHhhHHHHH---HHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEc
Q 014216 175 LKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (428)
Q Consensus 175 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~ 240 (428)
.+.+++++|.|+++||+.|+.+...+ .++.+.+..++....+|.+...... ++...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEeC
Confidence 45688999999999999999999887 5566656778999999987666543 22226699999985
No 228
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.24 E-value=5.6e-06 Score=64.06 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=70.3
Q ss_pred HhhcCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhcCceEEEEEcCc--ccHhHHHHcCCccccEEEEEe--CCC-
Q 014216 43 KVLNANGVVLVEFYAP----WCGHCQALTPIWEKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFV--PGK- 113 (428)
Q Consensus 43 ~~~~~~~~~lv~f~~~----~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~P~~~~~~--~g~- 113 (428)
...++.|+.+|++|++ ||..|+.... =.++.+.++.++.+...|++ +..+++..++++++|++.++. +++
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 4456789999999999 8888866542 13444455566777777875 456899999999999999883 333
Q ss_pred -CCccccCCCCcchHHHHHHHHH
Q 014216 114 -PPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 114 -~~~~~~g~~~~~~l~~~i~~~l 135 (428)
.+.+..|..+++++...+...+
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHH
Confidence 2678999999999999988765
No 229
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.23 E-value=1.2e-05 Score=61.25 Aligned_cols=94 Identities=29% Similarity=0.515 Sum_probs=70.2
Q ss_pred EEeCcc-chHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcC
Q 014216 163 IELNSS-NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 163 ~~l~~~-~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~ 241 (428)
..+++. ++..+ ....++++|.|+... .......|.++|..+++.+.|+.. .+..+.+++++ .|++++|++
T Consensus 3 ~~i~s~~~l~~f-~~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 3 VELRTEAEFEKF-LSDDDASVVGFFEDE---DSKLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY--GEGVVLFRP 73 (104)
T ss_pred cccCCHHHHHHH-hccCCcEEEEEEcCC---CchHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC--CCceEEEec
Confidence 344333 34444 456778888888752 246889999999999999999874 55678889998 488999943
Q ss_pred ------CCCCcccccCCCCHHHHHHHHHHH
Q 014216 242 ------DKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 242 ------~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
-++....|.|..+.+.|..||..+
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 235567799999999999999765
No 230
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.22 E-value=1.6e-06 Score=70.62 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=79.2
Q ss_pred CCcEEeC-ccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEE
Q 014216 30 SPVVQLT-PNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 30 ~~~~~l~-~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~ 108 (428)
....++. ..+|- ....++.-+++.||-+.-..|+-+...++.+++.+-+ ..|++||+.+.|-|+.+++|..+|++.+
T Consensus 66 G~y~ev~~Ekdf~-~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFF-EEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHH-HHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 3455555 45676 3445688899999999999999999999999999888 4899999999999999999999999999
Q ss_pred EeCCCCCccccCCCCcc
Q 014216 109 FVPGKPPVDYQGARDVK 125 (428)
Q Consensus 109 ~~~g~~~~~~~g~~~~~ 125 (428)
|.+|....++.|..+..
T Consensus 144 ~k~g~~~D~iVGF~dLG 160 (211)
T KOG1672|consen 144 FKNGKTVDYVVGFTDLG 160 (211)
T ss_pred EEcCEEEEEEeeHhhcC
Confidence 99998877777754433
No 231
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.19 E-value=3.3e-06 Score=75.14 Aligned_cols=103 Identities=16% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCCcEEeCc-cchHHHhhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccE
Q 014216 29 SSPVVQLTP-NNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105 (428)
Q Consensus 29 ~~~~~~l~~-~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~ 105 (428)
...+.+++. +.|...+-+. +..|||+||.+.++.|..+...|..+|.++.. +.|++|..+..+ +...|....+|+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 356778865 5676444332 45799999999999999999999999999997 799999987765 788899999999
Q ss_pred EEEEeCCCCCccccC-------CCCcchHHHHHHH
Q 014216 106 IKVFVPGKPPVDYQG-------ARDVKPIAEFALQ 133 (428)
Q Consensus 106 ~~~~~~g~~~~~~~g-------~~~~~~l~~~i~~ 133 (428)
+++|++|..+..+.| ..+..+|..||.+
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 999999976555544 2334455555544
No 232
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.7e-05 Score=67.70 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=82.1
Q ss_pred CCCCCcEEeCccchHHHhhcC--CCeEEEEEECC----CChhhhhhhHHHHHHHHHhcC--------ceEEEEEcCcccH
Q 014216 27 GSSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAP----WCGHCQALTPIWEKAATVLKG--------VATVAALDANEHQ 92 (428)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~--~~~~lv~f~~~----~C~~C~~~~~~~~~~~~~~~~--------~v~~~~vd~~~~~ 92 (428)
+....++.+++..|...+... +-..+|+|+|. .|.-|+.+..++.-++..+.. ++-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 467889999999999444322 44588889876 599999999999998887662 5899999999999
Q ss_pred hHHHHcCCccccEEEEEeCCCC-Cc------cccCCCCcchHHHHHHHHH
Q 014216 93 SLAQEYGIRGFPTIKVFVPGKP-PV------DYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 93 ~l~~~~~v~~~P~~~~~~~g~~-~~------~~~g~~~~~~l~~~i~~~l 135 (428)
++.+.+++...|++++|.+.+. .. .+.-...++++.+|+++..
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence 9999999999999999954332 11 1111223677777776653
No 233
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.18 E-value=2.1e-05 Score=59.18 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=73.3
Q ss_pred eecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCCce
Q 014216 276 TELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPA 355 (428)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P~ 355 (428)
..+++.+.++.+......++|+|+....+ .....+.++|..+|+. +.|+.+.. ..+.+.+++. .|.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~-------~~~~~f~~~A~~~r~~-~~F~~~~~---~~~~~~~~~~---~~~ 67 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES-------EEYKTFEKVAESLRDD-YGFGHTSD---KEVAKKLKVK---PGS 67 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc-------HHHHHHHHHHHhcccC-CeEEEECh---HHHHHHcCCC---CCc
Confidence 45667777777777788889999865322 3558999999999987 89988753 6777777765 488
Q ss_pred EEEEeccCCccccCCCCCCHHHHHHHHHH
Q 014216 356 LVALNVKKGVYTPLKSAFELEHIVEFVKE 384 (428)
Q Consensus 356 ~~i~~~~~~~~~~~~~~~~~~~i~~fi~~ 384 (428)
++++++.......|+|.++.+.|.+||..
T Consensus 68 i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 68 VVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 98998765556678999999999999964
No 234
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.16 E-value=5.9e-06 Score=59.16 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=42.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHc-----CCccccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY-----GIRGFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~-----~v~~~P~~~~~~~g~~ 114 (428)
++.||++||++|+++.+.+.+.. +.+-.+|++++......+ ++.++|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 67899999999999999886552 345567887776655553 89999997 5666654
No 235
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.15 E-value=1.1e-05 Score=77.72 Aligned_cols=103 Identities=23% Similarity=0.376 Sum_probs=79.0
Q ss_pred EEeCcc-chHHHHhhcC-CeEEEEEECCCChhHhhHHHHHH-HHHHHhc-CCeEEEEEeCCCc----hhHhhhcCCCcCc
Q 014216 163 IELNSS-NFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWK-KAANNLK-GKVKLGHVDCDSE----KSLMSKFNVQGFP 234 (428)
Q Consensus 163 ~~l~~~-~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~-~~a~~~~-~~~~f~~v~~~~~----~~~~~~~~v~~~P 234 (428)
..++.. ++++.+.+.. +++++.||++||-.|+...+.-- +....++ ..+....+|.+.+ .++.++||+-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 566666 6776664433 39999999999999999987542 3322222 2578888887765 4789999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 235 TILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
++++|..+++++....|.++.+.+.+++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999987776677789999999999998765
No 236
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.15 E-value=8.3e-06 Score=66.13 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=55.1
Q ss_pred CCcEEeCc--cchHHHhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcccHhHHHHc------
Q 014216 30 SPVVQLTP--NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEY------ 98 (428)
Q Consensus 30 ~~~~~l~~--~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~------ 98 (428)
.+|..... +.++ .+.+++++++|.++++||..|+.+..+- .+++..++..+.-+.||.++.+++...|
T Consensus 18 ~~V~W~~w~~ea~~-~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~ 96 (163)
T PF03190_consen 18 NPVNWQPWGEEALE-KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQA 96 (163)
T ss_dssp SSS--B-SSHHHHH-HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHH-HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHH
Confidence 44554444 4455 6677899999999999999999998733 5688888877888899999999998888
Q ss_pred --CCccccEEEEEeCC
Q 014216 99 --GIRGFPTIKVFVPG 112 (428)
Q Consensus 99 --~v~~~P~~~~~~~g 112 (428)
|..|+|+.+++.+.
T Consensus 97 ~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 97 MSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HHS---SSEEEEE-TT
T ss_pred hcCCCCCCceEEECCC
Confidence 78899998888543
No 237
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.15 E-value=9.3e-06 Score=65.74 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------cHhHHHHcCCccc
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIRGF 103 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------~~~l~~~~~v~~~ 103 (428)
++++++|.|| +.||+.|....+.+.++...+.+ .+.++.|..+. ...+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 68999999999999999888864 46666665532 3367888888887
Q ss_pred ---------cEEEEEe-CCCCCccccCCCCcchHHH
Q 014216 104 ---------PTIKVFV-PGKPPVDYQGARDVKPIAE 129 (428)
Q Consensus 104 ---------P~~~~~~-~g~~~~~~~g~~~~~~l~~ 129 (428)
|+.+++. +|+....+.|....+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 8888885 5776777888776665543
No 238
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.15 E-value=1.1e-05 Score=68.56 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=62.2
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc-------c-H---hH-HHHc--------------
Q 014216 47 ANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H-Q---SL-AQEY-------------- 98 (428)
Q Consensus 47 ~~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~-~---~l-~~~~-------------- 98 (428)
.+++ +++.+|++||++|++..|.+.++.+.+++ .+.++.|+|+. . . .+ .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 4665 45566999999999999999999999986 47888887631 0 1 11 1122
Q ss_pred ----------------------CCccccE---EEEE-eCCCCCccccCCCCcchHHHHHHHHH
Q 014216 99 ----------------------GIRGFPT---IKVF-VPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 99 ----------------------~v~~~P~---~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
++.++|+ .+++ ++|+.+.++.|..+.+.+.+.|.+.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2346684 3444 56777778889888888877777654
No 239
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.12 E-value=1.4e-05 Score=63.24 Aligned_cols=68 Identities=24% Similarity=0.498 Sum_probs=55.7
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------cHhHHHHcCCc--
Q 014216 47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIR-- 101 (428)
Q Consensus 47 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------~~~l~~~~~v~-- 101 (428)
.+++++|.||+. ||+.|+...+.+.++..+++. .+.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 999999999999999999885 47777777753 23677888888
Q ss_pred ----cccEEEEEeCCCC
Q 014216 102 ----GFPTIKVFVPGKP 114 (428)
Q Consensus 102 ----~~P~~~~~~~g~~ 114 (428)
.+|+++++..+..
T Consensus 104 ~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTSEESEEEEEEETTSB
T ss_pred cCCceEeEEEEECCCCE
Confidence 8888888866543
No 240
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.11 E-value=4.9e-05 Score=58.46 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=76.8
Q ss_pred EEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHH---hcCCeEEEEEeCCCchhHhhhcCCCc--CcEEE
Q 014216 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN---LKGKVKLGHVDCDSEKSLMSKFNVQG--FPTIL 237 (428)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~---~~~~~~f~~v~~~~~~~~~~~~~v~~--~P~i~ 237 (428)
.+++.++....+ ..+.+..++|+++ ..-......+.++|+. +++++.|+.+|.+......+.||++. +|.++
T Consensus 2 ~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 2 REITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred cccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 356666776554 4555555555543 2336788999999999 99999999999888778999999996 89999
Q ss_pred EEcCCCCCccc-ccCCCCHHHHHHHHHHHH
Q 014216 238 VFGADKDSPIP-YEGARTAGAIESFALEQL 266 (428)
Q Consensus 238 ~~~~~~~~~~~-y~g~~~~~~i~~fi~~~~ 266 (428)
+....+...+. +.+..+.+.|..|+.+.+
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 98754323444 568899999999998875
No 241
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.10 E-value=7.1e-06 Score=59.86 Aligned_cols=59 Identities=29% Similarity=0.405 Sum_probs=44.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-----hHHHHcCCccccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++.|+++||++|+++.+.+.++. .++.+.+..+|.+.+. .+.+.+|+.++|+++ .+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 57899999999999999998876 3444677777766443 366778999999974 46643
No 242
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.10 E-value=3.3e-05 Score=58.83 Aligned_cols=96 Identities=19% Similarity=0.346 Sum_probs=71.4
Q ss_pred ceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCCc
Q 014216 275 VTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYP 354 (428)
Q Consensus 275 v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P 354 (428)
+.++++...++.+....+.+||+|+.+..+ ...+.+.++|..+|+. +.|+.... ..+...+|+ . |
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~-------~~~~~F~~vA~~~R~d-~~F~~~~~---~~~~~~~~~-~---~ 66 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS-------KLLSEFLKAADTLRES-FRFAHTSD---KQLLEKYGY-G---E 66 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc-------hHHHHHHHHHHhhhhc-CEEEEECh---HHHHHhcCC-C---C
Confidence 345667777777777788899999866222 3447889999999988 89987644 677788887 4 7
Q ss_pred eEEEEeccC------CccccCCCCCCHHHHHHHHHHH
Q 014216 355 ALVALNVKK------GVYTPLKSAFELEHIVEFVKEA 385 (428)
Q Consensus 355 ~~~i~~~~~------~~~~~~~~~~~~~~i~~fi~~~ 385 (428)
.++++++.. .....|.|+++.+.|.+||...
T Consensus 67 ~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 67 GVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 788886532 3345688889999999999764
No 243
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.10 E-value=2e-05 Score=69.35 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc---------ccHhHHHHcCCccccEEEEEeCCCC--C
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN---------EHQSLAQEYGIRGFPTIKVFVPGKP--P 115 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~P~~~~~~~g~~--~ 115 (428)
.++..|++||...|++|+++.|.+..++..++=.+..+.+|.. -+...++++|+..+|+++++..+.. .
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence 3679999999999999999999999999998855555555543 1256889999999999999966532 2
Q ss_pred ccccCCCCcchHHHHHHHHH
Q 014216 116 VDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 116 ~~~~g~~~~~~l~~~i~~~l 135 (428)
-.-.|..+.++|.+-+....
T Consensus 229 pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEeeccCCHHHHHHHHHHHH
Confidence 33479999999887776554
No 244
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.09 E-value=7.6e-06 Score=65.25 Aligned_cols=68 Identities=25% Similarity=0.541 Sum_probs=56.6
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC---eEEEEEeCCCc-------------------------hhHhhhc
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSE-------------------------KSLMSKF 228 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~-------------------------~~~~~~~ 228 (428)
.++++.++|.+.||++|+.+.|.++.+.+...+. +.++.|+.+.+ ++++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4689999999999999999999999888888776 77777765542 3478899
Q ss_pred CCCcCcEEEEEcCCCC
Q 014216 229 NVQGFPTILVFGADKD 244 (428)
Q Consensus 229 ~v~~~P~i~~~~~~~~ 244 (428)
+|.+.|++++.++++.
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 9999999999987654
No 245
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.5e-05 Score=59.96 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHhhcCCeEEEEEECCCChhHhhHHHHH---HHHHHHhcCCeEEEEEeCCC----------------chhHhhhcCCCcC
Q 014216 173 LVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----------------EKSLMSKFNVQGF 233 (428)
Q Consensus 173 ~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----------------~~~~~~~~~v~~~ 233 (428)
.+...++..++.|.++.|..|..+.... ..+-+.+.+++.++.++... .++++++|+++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3344567889999999999999998765 44566677778888877543 3589999999999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHH
Q 014216 234 PTILVFGADKDSPIPYEGARTAGAIES 260 (428)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~ 260 (428)
|++++|..+++.....+|-+.+++...
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLA 143 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHH
Confidence 999999888777778889888877643
No 246
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.08 E-value=3e-05 Score=67.81 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=68.1
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCC-------c----hhHh-hhcCC-------------
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E----KSLM-SKFNV------------- 230 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~----~~~~-~~~~v------------- 230 (428)
..++++|.||++||+.|....+.+.++.+++.+. +.+..|+++. + ...+ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3579999999999999999999999999999864 8888888641 1 1222 23322
Q ss_pred ---------------------CcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHHH
Q 014216 231 ---------------------QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 231 ---------------------~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
...|+.+++.++++...+|.|..+.++|...|.+.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 123677778777777788889888888888887665
No 247
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.07 E-value=2.2e-05 Score=64.11 Aligned_cols=78 Identities=26% Similarity=0.473 Sum_probs=61.2
Q ss_pred cCCeEEEEEECC-CChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCC---------------------chhHhhhcCCC--
Q 014216 177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS---------------------EKSLMSKFNVQ-- 231 (428)
Q Consensus 177 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~---------------------~~~~~~~~~v~-- 231 (428)
..++++|.||+. ||++|....+.+.++++.+++. +.+..|..+. +..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 467899999999 9999999999999999987664 7777776544 23578888988
Q ss_pred -------cCcEEEEEcCCCCCcccccCCCC
Q 014216 232 -------GFPTILVFGADKDSPIPYEGART 254 (428)
Q Consensus 232 -------~~P~i~~~~~~~~~~~~y~g~~~ 254 (428)
.+|+++++.+++.......|...
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 89999999877755555555544
No 248
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.05 E-value=7.4e-05 Score=56.67 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=73.2
Q ss_pred ceecCchhhhhhhcC-CCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCC
Q 014216 275 VTELTSQDVMEEKCG-SAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGY 353 (428)
Q Consensus 275 v~~l~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~ 353 (428)
+..+++...++.+.. ....+||+|+.+..+ ...+.+.++|..+|+. +.|+.... ..+...+++. .
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~-------~~~~~F~~vA~~~R~d-~~F~~~~~---~~~~~~~~~~---~ 67 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS-------EHYKAFEEAAEEFHPY-IKFFATFD---SKVAKKLGLK---M 67 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC-------HHHHHHHHHHHhhhcC-CEEEEECc---HHHHHHcCCC---C
Confidence 456777777888887 788999999866222 3447899999999988 88877644 6777777775 5
Q ss_pred ceEEEEeccCCccccC-CCCCCHHHHHHHHHHH
Q 014216 354 PALVALNVKKGVYTPL-KSAFELEHIVEFVKEA 385 (428)
Q Consensus 354 P~~~i~~~~~~~~~~~-~~~~~~~~i~~fi~~~ 385 (428)
|.++++.........| +|.++.+.|.+||...
T Consensus 68 ~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 68 NEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 8898886534444567 7889999999999765
No 249
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.02 E-value=4.8e-05 Score=64.86 Aligned_cols=85 Identities=24% Similarity=0.241 Sum_probs=58.9
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe-------------C-----CCchhHhhhcCCCcCcEEEE
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-------------C-----DSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-------------~-----~~~~~~~~~~~v~~~P~i~~ 238 (428)
..++++|+||++||+.|+...+.+.++.+....++.++..+ . ..+.++.+.|++..+|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 46789999999999999999999999887654334333311 0 11346778889999999999
Q ss_pred EcCCCCCcccccCCC-CHHHHHHHHH
Q 014216 239 FGADKDSPIPYEGAR-TAGAIESFAL 263 (428)
Q Consensus 239 ~~~~~~~~~~y~g~~-~~~~i~~fi~ 263 (428)
+.+++ .+.+.|.. ..+.+.+.+.
T Consensus 153 ID~~G--~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 153 LDQDG--KIRAKGLTNTREHLESLLE 176 (189)
T ss_pred ECCCC--eEEEccCCCCHHHHHHHHH
Confidence 87655 44455653 4455555553
No 250
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.02 E-value=3.6e-05 Score=66.67 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=65.0
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCC---------CchhHhhhcCCCcCcEEEEEcCCCCCc-c
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD---------SEKSLMSKFNVQGFPTILVFGADKDSP-I 247 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~---------~~~~~~~~~~v~~~P~i~~~~~~~~~~-~ 247 (428)
++..+++||.+.|+.|..+.++++.+++.++=.+..+.+|-. .+.++++++||..+|+++++..+.... .
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 678899999999999999999999999999634444444311 357899999999999999997665322 3
Q ss_pred cccCCCCHHHHHHH
Q 014216 248 PYEGARTAGAIESF 261 (428)
Q Consensus 248 ~y~g~~~~~~i~~f 261 (428)
.-.|-++.++|.+-
T Consensus 200 v~~G~~s~~~L~~r 213 (215)
T PF13728_consen 200 VSQGFMSLDELEDR 213 (215)
T ss_pred EeeecCCHHHHHHh
Confidence 33588888887654
No 251
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.01 E-value=4e-05 Score=65.76 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=65.4
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCC-------c----hhHhhhcCCCcCc----------
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E----KSLMSKFNVQGFP---------- 234 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~----~~~~~~~~v~~~P---------- 234 (428)
..++++|.|+++||+.|....+.+.++.+.+.+. +.+..|+++. + ...++++++. +|
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-ceeeeeeeccCC
Confidence 3679999999999999999999999999999874 8888887631 1 2345555542 12
Q ss_pred ------------------------------EEEEEcCCCCCcccccCCCCHHHHHHHHHHHH
Q 014216 235 ------------------------------TILVFGADKDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 235 ------------------------------~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
+.+++.+++.....+.|..+.+.+...|...+
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 35566666666666777778888887777665
No 252
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.01 E-value=2.9e-06 Score=71.44 Aligned_cols=100 Identities=30% Similarity=0.545 Sum_probs=87.3
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
.+..++.+++...+ ..-+++.|+++||+.|+...+.|...|.--.+ .+.++.||.+.++.+.-+|-+...|+|.-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 67888999998776 45799999999999999999999998876555 599999999999999999999999999887
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 240 GADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
+. +..-+|.|..+..++.+|+...
T Consensus 102 kD--GeFrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 102 KD--GEFRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ec--cccccccCcccchhHHHHHHhh
Confidence 64 4588999999999999998765
No 253
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.00 E-value=8.6e-05 Score=66.16 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=71.1
Q ss_pred CCCcEEeCc-cchHHHHhhc--CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcE
Q 014216 159 SNESIELNS-SNFDELVLKS--KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (428)
Q Consensus 159 ~~~v~~l~~-~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~ 235 (428)
-..+.+++. +.+.+.+... ...+||.||.+.++.|..+...+..+|..|. .++|..|...... +..+|....+|+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCE
Confidence 456788865 6777776443 3368999999999999999999999999997 5999998765544 788999999999
Q ss_pred EEEEcCCCCCccccc-------CCCCHHHHHHHHHHH
Q 014216 236 ILVFGADKDSPIPYE-------GARTAGAIESFALEQ 265 (428)
Q Consensus 236 i~~~~~~~~~~~~y~-------g~~~~~~i~~fi~~~ 265 (428)
|++|+.|. ....+. ..++..+|..|+.++
T Consensus 202 llvYk~G~-l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGD-LIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTE-EEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCE-EEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99998553 222221 246677877777655
No 254
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.99 E-value=5.5e-05 Score=53.87 Aligned_cols=71 Identities=20% Similarity=0.471 Sum_probs=53.6
Q ss_pred EECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccC-CCCHHHHHHHHH
Q 014216 185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEG-ARTAGAIESFAL 263 (428)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi~ 263 (428)
+++++|+.|..+...+++++..++ +.+-.++....+++ .+||+.++|++++ ++ ...+.| .-+.++|.+|+.
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 367789999999999999999995 66666666555666 9999999999966 33 577888 567788887763
No 255
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.97 E-value=8.8e-05 Score=62.27 Aligned_cols=90 Identities=14% Similarity=0.285 Sum_probs=68.5
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC-----------------------------chhHhh
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-----------------------------EKSLMS 226 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-----------------------------~~~~~~ 226 (428)
.+++++++|+++||+.|....+.+.++.+.+.+ ++.|..|+.+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 567899999999999999999999999999974 68888887643 123567
Q ss_pred hcCCCcCcEEEEEcCCCCCcccccC-----------CCCHHHHHHHHHHHHhh
Q 014216 227 KFNVQGFPTILVFGADKDSPIPYEG-----------ARTAGAIESFALEQLET 268 (428)
Q Consensus 227 ~~~v~~~P~i~~~~~~~~~~~~y~g-----------~~~~~~i~~fi~~~~~~ 268 (428)
.|++...|+++++.+++. +.|.+ ..+..++.+-|...+..
T Consensus 104 ~~~v~~~P~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK--LVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCCe--EEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 888999999999976653 33332 24557788887666543
No 256
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.97 E-value=4.2e-05 Score=66.94 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=69.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc---------cHhHHHHcCCccccEEEEEeCCC-C-Cc
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------HQSLAQEYGIRGFPTIKVFVPGK-P-PV 116 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~v~~~P~~~~~~~g~-~-~~ 116 (428)
++..|++||.+.|++|+++.|.+..+++.++=.+..+.+|..- +...++++||..+|+++++..+. . .-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 6799999999999999999999999999988666666666522 23467899999999999996654 2 33
Q ss_pred cccCCCCcchHHHHHHHHH
Q 014216 117 DYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 117 ~~~g~~~~~~l~~~i~~~l 135 (428)
.-.|..+.++|.+-+....
T Consensus 223 v~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EeeccCCHHHHHHHHHHHH
Confidence 3478899998877776543
No 257
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.94 E-value=4.7e-05 Score=64.05 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc----------------------------cHhHHH
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 96 (428)
++++++|.|| +.||+.|....+.+.++++++.. .+.++.|.++. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999999874 35555555432 225666
Q ss_pred HcCCc------cccEEEEEe-CCCCCccccCC----CCcchHHHHHHH
Q 014216 97 EYGIR------GFPTIKVFV-PGKPPVDYQGA----RDVKPIAEFALQ 133 (428)
Q Consensus 97 ~~~v~------~~P~~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~ 133 (428)
+||+. ..|+.+++. +|+....+.+. .+.+.+.+.|.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 77876 567888885 55544445332 234455555543
No 258
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.93 E-value=2.9e-05 Score=68.23 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=59.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEE------------------------------------------E
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA------------------------------------------A 85 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~------------------------------------------~ 85 (428)
.+..++.|+.+.|++|+++++.+.++... .-++.+. .
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 56789999999999999999998876541 1111111 0
Q ss_pred EcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHHHH
Q 014216 86 LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 86 vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
.++.++.++++++||+++|+++ +.+|+. ..|..+.+.|.++|.+.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1112345889999999999987 677753 47999999999888753
No 259
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.93 E-value=5e-05 Score=51.74 Aligned_cols=60 Identities=38% Similarity=0.800 Sum_probs=50.8
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhh---hcCCCcCcEEEEEcCC
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS---KFNVQGFPTILVFGAD 242 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~---~~~v~~~P~i~~~~~~ 242 (428)
++.|+.+||+.|....+.+.++ ......+.+..++++....... .+++..+|+++++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 5556679999999988776554 7889999999999754
No 260
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.93 E-value=6.5e-05 Score=58.37 Aligned_cols=67 Identities=33% Similarity=0.692 Sum_probs=59.0
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCC-CchhHhhhcC--CCcCcEEEEEcCCCC
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFN--VQGFPTILVFGADKD 244 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~~~~~~~--v~~~P~i~~~~~~~~ 244 (428)
..++++.|+++||+.|+...+.+.++++.+...+.+..++.. ..+.+...++ +..+|+++++..+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 668888889999999999999999999999888899999986 7889999999 888999998765543
No 261
>PLN02412 probable glutathione peroxidase
Probab=97.90 E-value=9.9e-05 Score=61.57 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=64.0
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCCC--------chhH----hhhcCCC------------
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS--------EKSL----MSKFNVQ------------ 231 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~--------~~~~----~~~~~v~------------ 231 (428)
..++++|.||++||+.|....+.+.++.+.|++. +.+..|+++. .+++ ++++++.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 3578999999999999999999999999999874 8888887642 1122 3343332
Q ss_pred ----------------------cCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHHH
Q 014216 232 ----------------------GFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 232 ----------------------~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (428)
..|+.+++.++++....+.|..+.+++...|...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 23555566555655666677777777777776654
No 262
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.89 E-value=6.4e-05 Score=53.05 Aligned_cols=68 Identities=16% Similarity=0.448 Sum_probs=51.4
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh----HhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHH
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (428)
+..|+++||++|+...+.+.+ ..+.+..+|.+.++. +++.+++.++|++++. +. . ..| .+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~---~~-~--~~g-~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG---HK-I--IVG-FDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC---CE-E--Eee-CCHHH
Confidence 568999999999999888765 247788888876643 5677999999999885 22 1 444 57788
Q ss_pred HHHHH
Q 014216 258 IESFA 262 (428)
Q Consensus 258 i~~fi 262 (428)
|..++
T Consensus 69 i~~~i 73 (74)
T TIGR02196 69 LDQLL 73 (74)
T ss_pred HHHHh
Confidence 87775
No 263
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.88 E-value=0.00016 Score=55.51 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=59.4
Q ss_pred HhhHHHHHHHHHHHhc-CCeEEEEEeCCCchhHhhhcCCCc----CcEEEEEcCCCCCcccccCCC-CHHHHHHHHHHH
Q 014216 193 CKKLAPEWKKAANNLK-GKVKLGHVDCDSEKSLMSKFNVQG----FPTILVFGADKDSPIPYEGAR-TAGAIESFALEQ 265 (428)
Q Consensus 193 c~~~~~~~~~~a~~~~-~~~~f~~v~~~~~~~~~~~~~v~~----~P~i~~~~~~~~~~~~y~g~~-~~~~i~~fi~~~ 265 (428)
-......+.++|+.++ +++.|+.+|.+......+.||++. .|++++...++ ..+...+.. +.+.|.+|+.+.
T Consensus 33 ~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 3668889999999999 799999999887777899999984 89999987433 344457788 999999998764
No 264
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.87 E-value=6.1e-05 Score=61.59 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCCeE-EEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcccH
Q 014216 47 ANGVV-LVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQ 92 (428)
Q Consensus 47 ~~~~~-lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~ 92 (428)
.++++ |+.|++.||+.|+...+.+.++.+.+.+ .+.++.|+.+...
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 34554 5545699999999999999999999864 4778888876443
No 265
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.86 E-value=9.2e-05 Score=56.97 Aligned_cols=66 Identities=21% Similarity=0.482 Sum_probs=45.7
Q ss_pred CCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-------hHHH--HcCCccccEEEEEe
Q 014216 47 ANGVVLVEFYAP-------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-------SLAQ--EYGIRGFPTIKVFV 110 (428)
Q Consensus 47 ~~~~~lv~f~~~-------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~--~~~v~~~P~~~~~~ 110 (428)
++++++|+|+++ ||+.|+++.|.+.++.....+...++.|.+...+ .+.+ ++++.++||++-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 468899999854 9999999999999988887777778777774222 2333 58999999998886
Q ss_pred CC
Q 014216 111 PG 112 (428)
Q Consensus 111 ~g 112 (428)
.+
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 266
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.86 E-value=0.00026 Score=53.64 Aligned_cols=102 Identities=27% Similarity=0.368 Sum_probs=73.6
Q ss_pred CCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHH-HHhc--CceEEEEEcCc-----ccHhHHHHcCC-
Q 014216 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAA-TVLK--GVATVAALDAN-----EHQSLAQEYGI- 100 (428)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~-~~~~--~~v~~~~vd~~-----~~~~l~~~~~v- 100 (428)
.....|+.-+|+ +++.+.+.+||-|=.. -+-=.-+..+.+++ +... ..+.++.|-+. +|.+|+++|++
T Consensus 4 ~G~v~LD~~tFd-Kvi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 4 KGCVPLDELTFD-KVIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TTSEEESTTHHH-HHGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred Cceeeccceehh-heeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 346789999999 7778899999999532 22233445777777 4333 35888888875 57899999999
Q ss_pred -ccccEEEEEeCC-CCCccc--cCCCCcchHHHHHHHH
Q 014216 101 -RGFPTIKVFVPG-KPPVDY--QGARDVKPIAEFALQQ 134 (428)
Q Consensus 101 -~~~P~~~~~~~g-~~~~~~--~g~~~~~~l~~~i~~~ 134 (428)
..+|.+.+|..+ +...+| .|..+.++|.+|+..+
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 478999999854 447778 8999999999999865
No 267
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.85 E-value=4.5e-05 Score=60.21 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=47.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHc---CCccccEEEEEeC-CCCCccc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKVFVP-GKPPVDY 118 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~v~~~P~~~~~~~-g~~~~~~ 118 (428)
..+..++.|..+||+.|.+..|.+.++++..+ .+.+-.+.-++++++..+| |.+.+|+++++.+ |+.+.++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence 46678999999999999999999999999854 4666667777777777665 6789999999955 4444344
No 268
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.84 E-value=0.00016 Score=55.24 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=68.6
Q ss_pred cEEeCccc-hHHHHhhcC-CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 162 SIELNSSN-FDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 162 v~~l~~~~-~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
+..+++.. +..++ ... ..++|.|+...- ......|.++|..+++.+.|+.. ....+.+++++.. |.+++|
T Consensus 2 v~~i~s~~ele~f~-~~~~~~~VVG~F~~~~---~~~~~~F~~vA~~~Rdd~~F~~t---~~~~~~~~~~~~~-~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFL-RDGDDVIIIGVFSGEE---DPAYQLYQDAANSLREDYKFHHT---FDSEIFKSLKVSP-GQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHH-hcCCCEEEEEEECCCC---CHHHHHHHHHHHhcccCCEEEEE---ChHHHHHhcCCCC-CceEEE
Confidence 34554443 44444 444 788888887532 35788999999999999999875 4567888888875 888888
Q ss_pred c------CCCCCcccccCC-CCHHH-HHHHHHHH
Q 014216 240 G------ADKDSPIPYEGA-RTAGA-IESFALEQ 265 (428)
Q Consensus 240 ~------~~~~~~~~y~g~-~~~~~-i~~fi~~~ 265 (428)
+ .-.+....|.|. .+.++ |..|+..|
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 3 334557788888 67766 99998754
No 269
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.84 E-value=0.0001 Score=61.44 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhcCceEEEEEcCcc-----------------------cHhHHHHcCCcc
Q 014216 47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDANE-----------------------HQSLAQEYGIRG 102 (428)
Q Consensus 47 ~~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~v~~ 102 (428)
++++++|.||+.| |+.|....+.+.++++++. .+.++.|+++. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4789999999999 9999999999999999885 46666666642 125677777776
Q ss_pred cc---------EEEEEe-CCCC
Q 014216 103 FP---------TIKVFV-PGKP 114 (428)
Q Consensus 103 ~P---------~~~~~~-~g~~ 114 (428)
.| +.+++. +|+.
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I 143 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKV 143 (167)
T ss_pred cccccCCceeeEEEEECCCCeE
Confidence 66 666664 4443
No 270
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.80 E-value=6.9e-05 Score=54.74 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=53.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH----hHHHHcC--CccccEEEEEeCCCCCccccCCCCc
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYG--IRGFPTIKVFVPGKPPVDYQGARDV 124 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--v~~~P~~~~~~~g~~~~~~~g~~~~ 124 (428)
-++.|+.+||++|+++.+.|+++...+. .+.+..+|.+.+. ++.+..+ +.++|+++ .+|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc------CH
Confidence 4789999999999999999999987654 4778888887643 4555555 48999975 4675432 23
Q ss_pred chHHHHHHHH
Q 014216 125 KPIAEFALQQ 134 (428)
Q Consensus 125 ~~l~~~i~~~ 134 (428)
+++.+++...
T Consensus 73 ~~~~~~~~~~ 82 (85)
T PRK11200 73 TDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHh
Confidence 4566665543
No 271
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00056 Score=60.47 Aligned_cols=113 Identities=23% Similarity=0.373 Sum_probs=88.8
Q ss_pred CCCCcEEeCccchHHHHhhcCC--eEEEEEEC----CCChhHhhHHHHHHHHHHHhcC--------CeEEEEEeCCCchh
Q 014216 158 DSNESIELNSSNFDELVLKSKD--LWIVEFFA----PWCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSEKS 223 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~--~~~v~f~~----~~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~~~ 223 (428)
+...|+.+++..+..++...++ ..+|.|.+ ..|+-|....+.|+-+|..++. ++-|..||.++.+.
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 5678999999999998865444 45667776 3599999999999999988864 48899999999999
Q ss_pred HhhhcCCCcCcEEEEEcCCCCCc---ccc---cCCCCHHHHHHHHHHHHhhcC
Q 014216 224 LMSKFNVQGFPTILVFGADKDSP---IPY---EGARTAGAIESFALEQLETNV 270 (428)
Q Consensus 224 ~~~~~~v~~~P~i~~~~~~~~~~---~~y---~g~~~~~~i~~fi~~~~~~~~ 270 (428)
+.+.+++.+.|.+++|.+..+.+ ..+ +-....+++..|+.+...-+.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 99999999999999995543222 122 112458999999988865554
No 272
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00011 Score=55.10 Aligned_cols=65 Identities=18% Similarity=0.395 Sum_probs=52.4
Q ss_pred CCCeEEEEEECC--------CChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-------hHHHHcCC-ccccEEEEEe
Q 014216 47 ANGVVLVEFYAP--------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-------SLAQEYGI-RGFPTIKVFV 110 (428)
Q Consensus 47 ~~~~~lv~f~~~--------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~~~~v-~~~P~~~~~~ 110 (428)
+++.++|+|+++ |||.|.++.|.+.++.+.....+.|+.|++.+-+ .+.+..++ .++||++=+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 456699999854 9999999999999999987888999999986433 45556666 8999988776
Q ss_pred C
Q 014216 111 P 111 (428)
Q Consensus 111 ~ 111 (428)
.
T Consensus 104 ~ 104 (128)
T KOG3425|consen 104 R 104 (128)
T ss_pred C
Confidence 4
No 273
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.76 E-value=6.4e-05 Score=59.36 Aligned_cols=80 Identities=23% Similarity=0.443 Sum_probs=49.1
Q ss_pred eCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhc---CCCcCcEEEEEcC
Q 014216 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF---NVQGFPTILVFGA 241 (428)
Q Consensus 165 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~---~v~~~P~i~~~~~ 241 (428)
++++..........+..++.|..+|||.|....|.+.++|+... .+.+-.+..+.++++..+| |...+|+++++..
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 34444443333345678889999999999999999999999864 5666666556777777766 5778999999975
Q ss_pred CCCC
Q 014216 242 DKDS 245 (428)
Q Consensus 242 ~~~~ 245 (428)
+++.
T Consensus 107 ~~~~ 110 (129)
T PF14595_consen 107 DGKE 110 (129)
T ss_dssp T--E
T ss_pred CCCE
Confidence 5443
No 274
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.76 E-value=0.00014 Score=61.98 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc-------------------------cHhHHHHcC
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG 99 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 99 (428)
.+++++|.|| +.||+.|....+.+.++..++.+ .+.++.|.++. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 99999999999999999888864 35555555432 336788888
Q ss_pred Cc------cccEEEEEe-CCCCCccccC----CCCcchHHHHHH
Q 014216 100 IR------GFPTIKVFV-PGKPPVDYQG----ARDVKPIAEFAL 132 (428)
Q Consensus 100 v~------~~P~~~~~~-~g~~~~~~~g----~~~~~~l~~~i~ 132 (428)
+. ..|+.+++. +|+....+.+ .++.+++.+.|.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 86 468888884 5654333322 234555555553
No 275
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.75 E-value=0.00015 Score=58.91 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=52.3
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhcCceEEEEEcCccc-----------------------HhHHHHcCCcc
Q 014216 47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDANEH-----------------------QSLAQEYGIRG 102 (428)
Q Consensus 47 ~~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~~ 102 (428)
.+++++|.||+.| |++|++..+.+.++.++++ .+.++.|+.+.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999998 6999999999999999986 467777776421 35666777653
Q ss_pred ------ccEEEEEe-CCCCCcccc
Q 014216 103 ------FPTIKVFV-PGKPPVDYQ 119 (428)
Q Consensus 103 ------~P~~~~~~-~g~~~~~~~ 119 (428)
.|+.+++. +|+....+.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEE
Confidence 57777774 555433333
No 276
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.75 E-value=0.00011 Score=59.49 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.8
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhcC----ceEEEEEcCc
Q 014216 47 ANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKG----VATVAALDAN 89 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~v~~~~vd~~ 89 (428)
.+++++|.||++||+. |.+..+.+.++...+.. ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999997 99999999999998875 3777777654
No 277
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.72 E-value=0.00012 Score=60.13 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=36.4
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCC
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD 219 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~ 219 (428)
.++++|.||++||+ |....+.++++.+++++ .+.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 67899999999999 99999999999999975 5888888753
No 278
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.71 E-value=0.00018 Score=60.51 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~ 89 (428)
.++++||.|||+||+.|++ .+.|.++.+++++ .+.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4799999999999999975 8899999999986 4888888884
No 279
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.70 E-value=6.3e-05 Score=64.74 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=54.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEE--E-----------------------------------------
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV--A----------------------------------------- 84 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~--~----------------------------------------- 84 (428)
.+..++.|+.++|++|+++++.+.+ ..+.+.+ .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5789999999999999999998876 1221111 1
Q ss_pred --EEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHH
Q 014216 85 --ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 85 --~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
..+.+++..+++++|++++|+++ +.+|+. ..|..+.+.|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 11222345889999999999986 777754 56877777776653
No 280
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.70 E-value=0.00022 Score=58.67 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=57.8
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------cHhHHHHcCCccc
Q 014216 47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIRGF 103 (428)
Q Consensus 47 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------~~~l~~~~~v~~~ 103 (428)
++++++|.||+. ||+.|....+.+.++.+.+++ .+.++.|..+. ...+.++||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999975 788999999999999888875 36676666642 2366777887643
Q ss_pred ------------cEEEEE-eCCCCCccccCCCCcch
Q 014216 104 ------------PTIKVF-VPGKPPVDYQGARDVKP 126 (428)
Q Consensus 104 ------------P~~~~~-~~g~~~~~~~g~~~~~~ 126 (428)
|+.+++ ++|+....|.|....+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 566666 46776777777655444
No 281
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.69 E-value=0.00043 Score=60.03 Aligned_cols=38 Identities=16% Similarity=0.479 Sum_probs=30.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEE
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAA 85 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~ 85 (428)
+++-||.|++..|+||..+++.+ ..+.+.+.+.+.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~ 77 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTK 77 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEE
Confidence 46779999999999999999876 778888776555443
No 282
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.68 E-value=0.00015 Score=54.49 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=67.2
Q ss_pred CCcEEeCccchHHHhhcCCCeEEEEEECCCChhhh---hhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEE
Q 014216 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQ---ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106 (428)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~---~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~ 106 (428)
.....++..+++ .........+++|. ..|..+. ...=++.++.+.+.+.+..+.+.-..+..+..+||+..+|++
T Consensus 9 ~g~~~vd~~~ld-~~l~~~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 9 HGWPRVDADTLD-AFLAAPGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp -TEEEE-CCCHH-HHHHCCSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred cCCeeechhhHH-HHHhCCCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 456788888888 55555666555554 4444444 444488888899999988888887788999999999999999
Q ss_pred EEEeCCCCCccccCCCC
Q 014216 107 KVFVPGKPPVDYQGARD 123 (428)
Q Consensus 107 ~~~~~g~~~~~~~g~~~ 123 (428)
+++++|+.+....|.++
T Consensus 87 vf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 87 VFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp EEEETTEEEEEEESSST
T ss_pred EEEECCEEEEEecCeec
Confidence 99999987666666554
No 283
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.67 E-value=0.00017 Score=60.40 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=61.4
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEE------EEEeCCC-----------------------------ch
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL------GHVDCDS-----------------------------EK 222 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f------~~v~~~~-----------------------------~~ 222 (428)
.++++|.|++.||++|+...|.+.+++.. .+.+ ..||.++ ..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 78999999999999999999999998653 2333 3344332 33
Q ss_pred hHhhhcCCCcCcEE-EEEcCCCCCcccccCCCCHHHHHH
Q 014216 223 SLMSKFNVQGFPTI-LVFGADKDSPIPYEGARTAGAIES 260 (428)
Q Consensus 223 ~~~~~~~v~~~P~i-~~~~~~~~~~~~y~g~~~~~~i~~ 260 (428)
.+...||+..+|+. +++.+++.....+.|..+.+++..
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 45668888889877 788878877788899998888766
No 284
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.64 E-value=0.00038 Score=56.88 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------c--HhHHHHcCCcc
Q 014216 48 NGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------H--QSLAQEYGIRG 102 (428)
Q Consensus 48 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------~--~~l~~~~~v~~ 102 (428)
+++++|.|| +.||+.|....+.+.++.+.+++ .+.++.|+.+. . ..+.+.||+..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888887 89999999999999999999874 46666665542 2 45666777763
Q ss_pred ----c--cEEEEEe-CCCCCccccCC
Q 014216 103 ----F--PTIKVFV-PGKPPVDYQGA 121 (428)
Q Consensus 103 ----~--P~~~~~~-~g~~~~~~~g~ 121 (428)
. |+.+++. +|+....+.|.
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecC
Confidence 2 2666664 56555555553
No 285
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.63 E-value=0.00049 Score=49.88 Aligned_cols=105 Identities=16% Similarity=0.316 Sum_probs=77.8
Q ss_pred cceecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCC--chhHHHHhCCCCC
Q 014216 274 EVTELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGK--QPDLENRVGVGGY 351 (428)
Q Consensus 274 ~v~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~--~~~~~~~~gl~~~ 351 (428)
.+..++....+..+...+..+.++|... .......+..++++|...+++ =+.+|||+.+ ...+|+.+.++..
T Consensus 2 ~ie~i~d~KdfKKLLRTr~NVLvLy~ks-----~k~a~~~Lk~~~~~A~~vkG~-gT~~~vdCgd~e~kKLCKKlKv~~~ 75 (112)
T cd03067 2 LIEDISDHKDFKKLLRTRNNVLVLYSKS-----AKSAEALLKLLSDVAQAVKGQ-GTIAWIDCGDSESRKLCKKLKVDPS 75 (112)
T ss_pred ccccccchHHHHHHHhhcCcEEEEEecc-----hhhHHHHHHHHHHHHHHhcCc-eeEEEEecCChHHHHHHHHHccCCC
Confidence 3456777777887777777777777643 244556788999999999998 7777777665 7789999999844
Q ss_pred CCce-EEEEeccCCcc-ccCCCCCCHHHHHHHHHH
Q 014216 352 GYPA-LVALNVKKGVY-TPLKSAFELEHIVEFVKE 384 (428)
Q Consensus 352 ~~P~-~~i~~~~~~~~-~~~~~~~~~~~i~~fi~~ 384 (428)
.-|. +.+...+.+.| ..|+..++..++..|+.+
T Consensus 76 ~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 76 SKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCCCcchhhcccCCCccccccchhhHHHHHHHhhC
Confidence 3343 33445567777 467888999999999864
No 286
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.63 E-value=0.00033 Score=57.58 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=37.3
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDC 218 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~ 218 (428)
..++++|.|+++||+.|....+.+.++.+.+++ .+.+..|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 356788999999999999999999999999986 588888886
No 287
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.63 E-value=0.00031 Score=62.60 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEc----------------------------------------
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD---------------------------------------- 87 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd---------------------------------------- 87 (428)
.+.+++.|+.+.|++|+++++.+..+... +++.+..+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 45689999999999999999988776553 222221110
Q ss_pred ------C----cccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHH
Q 014216 88 ------A----NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 88 ------~----~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 132 (428)
| +++..+++++|++++|++++-.....+....|..+.+.|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 0 01335788899999999866643233456789998888877663
No 288
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.62 E-value=0.00025 Score=57.22 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~ 89 (428)
.+++++|.|| +.||+.|....+.+.++..+++. .+.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5889999999 78999999999999999998853 4666666664
No 289
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.61 E-value=0.00026 Score=49.75 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=37.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHH----cCCccccEEEE
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE----YGIRGFPTIKV 108 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~v~~~P~~~~ 108 (428)
++.|+++||++|+++...+.+. .+.+..++.+.+....+. .++.++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999998877652 355666777766544433 37889999865
No 290
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.61 E-value=0.00051 Score=60.65 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=68.4
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC---------chhHhhhcCCCcCcEEEEEcCCCCCccc
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------EKSLMSKFNVQGFPTILVFGADKDSPIP 248 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------~~~~~~~~~v~~~P~i~~~~~~~~~~~~ 248 (428)
++..+++||...|+.|..+.++++.+++.++=.+..+.+|-.. +...++++|+..+|++++...+......
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 4588999999999999999999999999997445555554331 2558999999999999999766433322
Q ss_pred -ccCCCCHHHHHHHHHHHH
Q 014216 249 -YEGARTAGAIESFALEQL 266 (428)
Q Consensus 249 -y~g~~~~~~i~~fi~~~~ 266 (428)
-.|.++.++|.+-|....
T Consensus 230 v~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 230 LAYGFISQDELKERILNVL 248 (256)
T ss_pred EeeccCCHHHHHHHHHHHH
Confidence 258899999987766554
No 291
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.60 E-value=0.00059 Score=52.06 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred ceecCchhhhhhhcCCC-CeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCC
Q 014216 275 VTELTSQDVMEEKCGSA-AICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGY 353 (428)
Q Consensus 275 v~~l~~~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~ 353 (428)
+..+++.+.++.+.... ..+||+|+....+ ...+.+.++|..+|+. +.|+.... ..+...+|+. .
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~-------~~~~~F~~vA~~~Rdd-~~F~~t~~---~~~~~~~~~~---~ 67 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED-------PAYQLYQDAANSLRED-YKFHHTFD---SEIFKSLKVS---P 67 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC-------HHHHHHHHHHHhcccC-CEEEEECh---HHHHHhcCCC---C
Confidence 45677777777776665 7889999865221 2447888999999998 89987644 6777888876 4
Q ss_pred ceEEEEeccC------CccccCCCC-CCHHH-HHHHHHH
Q 014216 354 PALVALNVKK------GVYTPLKSA-FELEH-IVEFVKE 384 (428)
Q Consensus 354 P~~~i~~~~~------~~~~~~~~~-~~~~~-i~~fi~~ 384 (428)
|.+++++|.. .....|.+. .+.++ |.+||.+
T Consensus 68 ~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 68 GQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 7788887653 223456666 67766 9999975
No 292
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.59 E-value=0.00018 Score=52.29 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=42.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-----hHhhhcCCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKFNVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~~~~~~~v~~~P~i~~ 238 (428)
++.|+++||++|....+.+.++. ....+.+..++.+.+. .+.+.+|+.++|++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999999876 3334777777755433 3666778989999854
No 293
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.00041 Score=52.39 Aligned_cols=76 Identities=18% Similarity=0.371 Sum_probs=66.1
Q ss_pred chHHHhh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC
Q 014216 39 NFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 39 ~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
+.++.+. .+.+.++|.|...|-+.|-.+...+.++++...+-..++.+|.++-+.+-+-|++...|++++|-+++-
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 3443443 357899999999999999999999999999999877888999999999999999999999999977654
No 294
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.58 E-value=0.00064 Score=52.60 Aligned_cols=91 Identities=5% Similarity=0.027 Sum_probs=65.8
Q ss_pred hhcCCeEEEEEECC----CChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch--hHhhhcCCCcCcEEEEEcCC---CCC
Q 014216 175 LKSKDLWIVEFFAP----WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK--SLMSKFNVQGFPTILVFGAD---KDS 245 (428)
Q Consensus 175 ~~~~~~~~v~f~~~----~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~--~~~~~~~v~~~P~i~~~~~~---~~~ 245 (428)
.++.+..+|+++++ ||..|+..... .++.+.+..++.+...|.+..+ .++..++++++|.++++... .+.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 45678999999999 78888554321 3445555567777777775543 68999999999999999322 223
Q ss_pred cccccCCCCHHHHHHHHHHHH
Q 014216 246 PIPYEGARTAGAIESFALEQL 266 (428)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~~ 266 (428)
..+..|..+++++...+....
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456789999999988876653
No 295
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.58 E-value=0.00045 Score=54.40 Aligned_cols=67 Identities=19% Similarity=0.486 Sum_probs=53.2
Q ss_pred cCCeEEEEEECC-CChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCc---------------------hhHhhhcCCC--
Q 014216 177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE---------------------KSLMSKFNVQ-- 231 (428)
Q Consensus 177 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~---------------------~~~~~~~~v~-- 231 (428)
.+++++|.||+. ||+.|....+.+.++...++. .+.+..|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 457999999998 999999999999999999986 588888886553 2456667776
Q ss_pred ----cCcEEEEEcCCC
Q 014216 232 ----GFPTILVFGADK 243 (428)
Q Consensus 232 ----~~P~i~~~~~~~ 243 (428)
.+|+++++.+++
T Consensus 104 ~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTSEESEEEEEEETTS
T ss_pred cCCceEeEEEEECCCC
Confidence 677777776544
No 296
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.57 E-value=0.00017 Score=52.65 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=51.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc----HhHHHHcCC--ccccEEEEEeCCCCCccccCCCCc
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGI--RGFPTIKVFVPGKPPVDYQGARDV 124 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~v--~~~P~~~~~~~g~~~~~~~g~~~~ 124 (428)
+++.|+.+||++|.++...|.++.....+ +.+..+|.+.+ .++.+..|- .++|+++ .+|+.+ ...
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i------gG~ 71 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV------GGC 71 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe------cCH
Confidence 36889999999999999999887655433 56777777643 356666664 7999974 356432 223
Q ss_pred chHHHHHHHH
Q 014216 125 KPIAEFALQQ 134 (428)
Q Consensus 125 ~~l~~~i~~~ 134 (428)
++|.+++.+.
T Consensus 72 ~dl~~~~~~~ 81 (86)
T TIGR02183 72 TDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHhc
Confidence 5666666543
No 297
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.56 E-value=0.00039 Score=46.87 Aligned_cols=54 Identities=22% Similarity=0.456 Sum_probs=39.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH----hHHHHcCCccccEEEEEeCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGK 113 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~P~~~~~~~g~ 113 (428)
++.|+.+||++|+++...|.+ . .+.+-.+|++.++ ++.+..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 578999999999999988832 2 2667777887664 3334459999999765 553
No 298
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.56 E-value=0.00036 Score=56.34 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------chhHhhhcCCCcC-
Q 014216 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------EKSLMSKFNVQGF- 233 (428)
Q Consensus 178 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------~~~~~~~~~v~~~- 233 (428)
.++++|.|| +.||+.|....+.+.++...+.+ .+.++.|..+. +..+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 578888888 58999999999999999888865 46777665443 2345666676665
Q ss_pred --------cEEEEEcCCCCCcccccCCCCHHHH
Q 014216 234 --------PTILVFGADKDSPIPYEGARTAGAI 258 (428)
Q Consensus 234 --------P~i~~~~~~~~~~~~y~g~~~~~~i 258 (428)
|+.+++.+++.....+.|....+++
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~ 135 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA 135 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence 6777776666555666665544444
No 299
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.50 E-value=0.00046 Score=59.46 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCCeEEE-EEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc---------------------------ccHhHHHH
Q 014216 47 ANGVVLV-EFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQE 97 (428)
Q Consensus 47 ~~~~~lv-~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~---------------------------~~~~l~~~ 97 (428)
+++.+++ .|++.||+.|....+.+.++..+++. .+.++.|.++ .+..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3555544 68899999999999999999888874 3555555444 23467788
Q ss_pred cCCc------cccEEEEEeC-CCCCccc----cCCCCcchHHHHHHHH
Q 014216 98 YGIR------GFPTIKVFVP-GKPPVDY----QGARDVKPIAEFALQQ 134 (428)
Q Consensus 98 ~~v~------~~P~~~~~~~-g~~~~~~----~g~~~~~~l~~~i~~~ 134 (428)
||+. .+|+.+++.+ |+..... .+.++.+++.+.+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8884 5899999864 4332111 4456777777777643
No 300
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.49 E-value=0.00079 Score=59.07 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=67.2
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC---------chhHhhhcCCCcCcEEEEEcCCCCCccc
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------EKSLMSKFNVQGFPTILVFGADKDSPIP 248 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------~~~~~~~~~v~~~P~i~~~~~~~~~~~~ 248 (428)
++..+++||...|+.|..+.++++.+++.++=.+..+.+|-.- +...++++|+..+|++++...+......
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 4578999999999999999999999999997555555555321 3356789999999999999765433322
Q ss_pred -ccCCCCHHHHHHHHHHH
Q 014216 249 -YEGARTAGAIESFALEQ 265 (428)
Q Consensus 249 -y~g~~~~~~i~~fi~~~ 265 (428)
-.|.++.++|.+-+...
T Consensus 223 v~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EeeccCCHHHHHHHHHHH
Confidence 24888999997766554
No 301
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.44 E-value=0.00081 Score=50.22 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=56.4
Q ss_pred cchHHHhhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH----hHHHHcCCc-cccEEEEEe
Q 014216 38 NNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIR-GFPTIKVFV 110 (428)
Q Consensus 38 ~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~-~~P~~~~~~ 110 (428)
++++ .++++ +++++|+=+++.|+-+..+...|++......+.+.++.+|+-+++ .++.++||. .-|.+++++
T Consensus 8 eql~-~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~ 86 (105)
T PF11009_consen 8 EQLE-EILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK 86 (105)
T ss_dssp HHHH-HHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE
T ss_pred HHHH-HHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE
Confidence 4555 45444 789999999999999999999999999998877889999997765 678899998 789999999
Q ss_pred CCCC
Q 014216 111 PGKP 114 (428)
Q Consensus 111 ~g~~ 114 (428)
+|+.
T Consensus 87 ~g~~ 90 (105)
T PF11009_consen 87 NGKV 90 (105)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9975
No 302
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.42 E-value=0.0017 Score=55.10 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCe-EEEEEECCCChhHhhHHHHHHHHHHHhcCC-eEEEEEeCC
Q 014216 178 KDL-WIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD 219 (428)
Q Consensus 178 ~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~ 219 (428)
.++ +++.++++||+.|....+.+.++.+.+++. +.+..|+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 444 445668999999999999999999999764 888888763
No 303
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.41 E-value=0.0017 Score=53.80 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=62.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHh--cCceEEEEEcCcc----------------------------------
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDANE---------------------------------- 90 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~--~~~v~~~~vd~~~---------------------------------- 90 (428)
..++.|+.|+...|++|+.+.+.+.++.+.+ ++++.+...+.-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3567999999999999999999999999998 7777776665410
Q ss_pred ----------------------------------cHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHHH
Q 014216 91 ----------------------------------HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 91 ----------------------------------~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
..+.++++||.++|++++ +|+. +.|..+.+.+..+|.+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 005566779999999876 7754 5778888888888753
No 304
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.40 E-value=0.00047 Score=49.68 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=58.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCC--CCCccccCCCCcchHHH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPG--KPPVDYQGARDVKPIAE 129 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g--~~~~~~~g~~~~~~l~~ 129 (428)
+++|+.++|.-|..+...+..+....+ +.+-.||+++++.+..+|+. .+|.+.+-..+ .......+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 789999999999999999988766544 78889999999999999995 89996542211 11344567788888888
Q ss_pred HHH
Q 014216 130 FAL 132 (428)
Q Consensus 130 ~i~ 132 (428)
||+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 305
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.39 E-value=0.00044 Score=49.97 Aligned_cols=57 Identities=26% Similarity=0.504 Sum_probs=41.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc-----HhHHHHcCCccccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-----QSLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++.|+++||++|+.+.+.+.++.. ...+..++.+.+ ..+.+..|..++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 588999999999999999988655 345666666544 235566788999996 445643
No 306
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.38 E-value=0.002 Score=46.87 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=67.6
Q ss_pred cchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC--chhHhhhcCCC----cCcE-EEEEc
Q 014216 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQ----GFPT-ILVFG 240 (428)
Q Consensus 168 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~~~~~~~v~----~~P~-i~~~~ 240 (428)
.+|...+ +..+.++|+|..+.- .-......|.++|+..++.-..+.|||.. .+.+|+++.+. --|. +.-|+
T Consensus 10 KdfKKLL-RTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK 87 (112)
T cd03067 10 KDFKKLL-RTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK 87 (112)
T ss_pred HHHHHHH-hhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence 4555554 556667777776532 22455668999999999999999999987 57899999988 3343 33445
Q ss_pred CCCCCcccccCCCCHHHHHHHHH
Q 014216 241 ADKDSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~fi~ 263 (428)
+ +.-...|.-..+..+|.+|+.
T Consensus 88 d-G~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 88 D-GDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred C-CCccccccchhhHHHHHHHhh
Confidence 3 445677888889999999974
No 307
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.38 E-value=0.00056 Score=48.71 Aligned_cols=52 Identities=23% Similarity=0.484 Sum_probs=38.7
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhh-----cCCCcCcEEEEEc
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK-----FNVQGFPTILVFG 240 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~-----~~v~~~P~i~~~~ 240 (428)
++.|+++||++|+.+.+.+.++. +.+-.+|.+.++..... +++.++|+++ +.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~ 58 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK-FA 58 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEE-EC
Confidence 57899999999999999887653 44456777766655555 3888999974 54
No 308
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.36 E-value=0.0016 Score=55.14 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc-------------------------ccHhHHHHcC
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN-------------------------EHQSLAQEYG 99 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~-------------------------~~~~l~~~~~ 99 (428)
.++++++.|| +.||+.|....+.+.+...++.+ .+.++.|..+ .+..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3678999999 99999999999999999998864 3455555543 2347888999
Q ss_pred Cc----cc--cEEEEEe-CCCCCccc----cCCCCcchHHHHHHH
Q 014216 100 IR----GF--PTIKVFV-PGKPPVDY----QGARDVKPIAEFALQ 133 (428)
Q Consensus 100 v~----~~--P~~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~ 133 (428)
+. +. |+.+++. +|+....+ ...++.+++.+.+..
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 83 55 9988885 55442222 223566677666643
No 309
>PRK15000 peroxidase; Provisional
Probab=97.36 E-value=0.0022 Score=55.14 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=61.1
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc----------------------------ccHhHHH
Q 014216 47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDAN----------------------------EHQSLAQ 96 (428)
Q Consensus 47 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~----------------------------~~~~l~~ 96 (428)
+++++++.||+. ||+.|....+.+.+.+.+++. .+.++.|.++ .+..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999984 999999999999999999874 3555555554 1236677
Q ss_pred HcCCc------cccEEEEEe-CCCCCccccC----CCCcchHHHHHH
Q 014216 97 EYGIR------GFPTIKVFV-PGKPPVDYQG----ARDVKPIAEFAL 132 (428)
Q Consensus 97 ~~~v~------~~P~~~~~~-~g~~~~~~~g----~~~~~~l~~~i~ 132 (428)
.||+. ..|+.+++. +|+....+.| .++.+++.+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 78887 689998886 5554333333 345556666554
No 310
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.28 E-value=0.0017 Score=53.13 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=28.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG 79 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~ 79 (428)
..++.|+.|+.++|++|+++.+.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 357899999999999999999999998776643
No 311
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.28 E-value=0.00089 Score=47.02 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=39.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHc---CCccccEEEE
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKV 108 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~v~~~P~~~~ 108 (428)
+..|+.++|++|++....|.+ ..+.+-.+|+++++.....+ |..++|.+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 467889999999999988864 23677788888777555554 8889999644
No 312
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.25 E-value=0.00096 Score=47.83 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=43.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc---HhHHHHcCCccccEEEEEeCCCC
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
+++.-++.|+.+||++|++....|.+. .+.+-.+|++++ ..+.+..|...+|.+++ +|+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 355568899999999999999988642 255666777655 34555678899999753 6653
No 313
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.22 E-value=0.0019 Score=52.64 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCchh
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKS 223 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~ 223 (428)
+..+++.|++.||+.|+...+.+.++.+.+.+ .+.++.|+.+....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 33444445589999999999999999999965 58888888765443
No 314
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0053 Score=51.96 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=66.3
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCH
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA 255 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~ 255 (428)
......+++|+++||..|..+...+..+++.+ ..+.|...+.+...+++..+.+...|..+++..+ +...+..|....
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~-~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG-EKVDRLSGADPP 92 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecc-hhhhhhhccCcH
Confidence 45667889999999999999999999999999 6799999999999999999999999999998533 334444554444
Q ss_pred HHH
Q 014216 256 GAI 258 (428)
Q Consensus 256 ~~i 258 (428)
...
T Consensus 93 ~~~ 95 (227)
T KOG0911|consen 93 FLV 95 (227)
T ss_pred HHH
Confidence 333
No 315
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.19 E-value=0.0031 Score=52.55 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=35.8
Q ss_pred CCeEEEEEECCC-ChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 014216 178 KDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220 (428)
Q Consensus 178 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~ 220 (428)
.++++|.||+.| |+.|....+.|.++++.+. .+.+..|+.+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence 568999999999 9999999999999999984 67777777654
No 316
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.19 E-value=0.0029 Score=53.19 Aligned_cols=88 Identities=10% Similarity=0.105 Sum_probs=60.0
Q ss_pred CCeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHhhh
Q 014216 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK 227 (428)
Q Consensus 178 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~~~~~ 227 (428)
.++++|.|| +.||+.|....+.+.++++.|.+ .+.+..|+.+. ...++++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 578889999 79999999999999999999865 46666665443 2235556
Q ss_pred cCCC------cCcEEEEEcCCCCCcccccC----CCCHHHHHHHHHHH
Q 014216 228 FNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFALEQ 265 (428)
Q Consensus 228 ~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~~ 265 (428)
||+. ..|+.+++.+++.....+.+ ..+.+++...+...
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6765 35788888766644444422 23556677666443
No 317
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.18 E-value=0.0012 Score=46.02 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHh----HHHHcCCccccEEEEEeCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK 113 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~P~~~~~~~g~ 113 (428)
++.|+++||++|+.+.+.+.+.. +.+..+|.+.+.+ +.+..+...+|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 57899999999999999887654 5666778776553 34445778899864 3554
No 318
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.14 E-value=0.0033 Score=51.17 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=67.6
Q ss_pred CCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHH-HH--HHHHHHhcCCeEEEEEeCCCchhHhhhc-------
Q 014216 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMSKF------- 228 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~~~~~~------- 228 (428)
+..-....++.+..+ ...+++.+|.++.+||..|..+.. .| .++|+.+...+.-+.||.++.+++...|
T Consensus 19 ~V~W~~w~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~ 97 (163)
T PF03190_consen 19 PVNWQPWGEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAM 97 (163)
T ss_dssp SS--B-SSHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHh
Confidence 444555566666665 467889999999999999998876 55 5688888888888899998888887777
Q ss_pred -CCCcCcEEEEEcCCCCCc--cccc------CCCCHHHHHHHHHHHHhh
Q 014216 229 -NVQGFPTILVFGADKDSP--IPYE------GARTAGAIESFALEQLET 268 (428)
Q Consensus 229 -~v~~~P~i~~~~~~~~~~--~~y~------g~~~~~~i~~fi~~~~~~ 268 (428)
|..++|..+++.+.++.. .+|- |.....++...|.+.|..
T Consensus 98 ~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~ 146 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKE 146 (163)
T ss_dssp HS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHH
Confidence 778999999998765311 1121 223455667777776653
No 319
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.11 E-value=0.0036 Score=62.41 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=72.8
Q ss_pred EEeCccchHHHhhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeC
Q 014216 33 VQLTPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (428)
Q Consensus 33 ~~l~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~ 111 (428)
..|+++..+ .+.. .+..-+-.|.++.|++|......+.+++...+ .+..-.+|....++++++|++.++|++++ +
T Consensus 102 ~~l~~~~~~-~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~ 177 (515)
T TIGR03140 102 PKLDEGIID-RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--N 177 (515)
T ss_pred CCCCHHHHH-HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--C
Confidence 355555444 3433 34557999999999999999999999888755 58888899999999999999999999765 5
Q ss_pred CCCCccccCCCCcchHHHHHHH
Q 014216 112 GKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 112 g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
++ ..+.|..+.+.+.+.+.+
T Consensus 178 ~~--~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 178 GE--EFHNGRMDLAELLEKLEE 197 (515)
T ss_pred Cc--EEEecCCCHHHHHHHHhh
Confidence 54 346787777766555543
No 320
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.10 E-value=0.0083 Score=44.09 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCeEEEEecCCccchhhhchhHHHHHHHHHHHHh----hc----CcceEEEecCCCchhHHH-HhCCCCCCCceEEEEec
Q 014216 291 AAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKF----KR----GHYSFVWAAAGKQPDLEN-RVGVGGYGYPALVALNV 361 (428)
Q Consensus 291 ~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~----~~----~~~~f~~id~~~~~~~~~-~~gl~~~~~P~~~i~~~ 361 (428)
..+|+|+|++..... ..+...++++.+|+++ +. .++.|.+...++-..+++ ..++.. ..|.+++++.
T Consensus 14 ~~p~lvlf~D~Edeg---~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d-~~P~LviLDi 89 (116)
T cd03071 14 EGPCLVLFVDSEDEG---ESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPE-AAPLLTILDM 89 (116)
T ss_pred CCceEEEEecccchh---hHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCc-cCceEEEEec
Confidence 458999998552211 2344556777766644 22 245555544444444444 456664 7899999988
Q ss_pred cCCc-cccCCCCCCHHHHHHHHHHHh
Q 014216 362 KKGV-YTPLKSAFELEHIVEFVKEAG 386 (428)
Q Consensus 362 ~~~~-~~~~~~~~~~~~i~~fi~~~~ 386 (428)
..++ |+.-..++|++.+++|+.+|+
T Consensus 90 p~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 90 SARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred cccceEeCchHhcCHHHHHHHHHHhh
Confidence 7655 444446899999999999985
No 321
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.10 E-value=0.003 Score=47.21 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=58.7
Q ss_pred ccchHHHHhhc-CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch----hHhhhcCCCc-CcEEEEEc
Q 014216 167 SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK----SLMSKFNVQG-FPTILVFG 240 (428)
Q Consensus 167 ~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~----~~~~~~~v~~-~P~i~~~~ 240 (428)
.+++.+++..+ .++++++=++..|+-+......|++......+.+.++.++.-+.+ .++++|||.. -|.+++++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~ 86 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK 86 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE
Confidence 35566555332 668888888999999999999999999998877999999987765 6789999984 59999998
Q ss_pred CCCCCcccccCCCCHHHH
Q 014216 241 ADKDSPIPYEGARTAGAI 258 (428)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i 258 (428)
++.-....-++.++.+.|
T Consensus 87 ~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 87 NGKVVWHASHWDITAEAL 104 (105)
T ss_dssp TTEEEEEEEGGG-SHHHH
T ss_pred CCEEEEECccccCCHHhc
Confidence 653222222344555443
No 322
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.10 E-value=0.003 Score=48.68 Aligned_cols=66 Identities=20% Similarity=0.434 Sum_probs=45.7
Q ss_pred cCCeEEEEEEC-------CCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-------hHhh--hcCCCcCcEEEEEc
Q 014216 177 SKDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMS--KFNVQGFPTILVFG 240 (428)
Q Consensus 177 ~~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~~~~--~~~v~~~P~i~~~~ 240 (428)
...+.+|+|++ +|||.|....|..+++-....+...++.|...... .... +++++.+|||+-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 45688888884 59999999999999988887777888877765432 2333 58999999999996
Q ss_pred CC
Q 014216 241 AD 242 (428)
Q Consensus 241 ~~ 242 (428)
.+
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 323
>PHA03050 glutaredoxin; Provisional
Probab=97.09 E-value=0.0015 Score=49.82 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=40.2
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc---c----HhHHHHcCCccccEEEEEeCCCC
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---H----QSLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~----~~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
-++.|..+|||+|+++...|.+...... .+-.+|+++ . ..+.+..|.+++|+++ .+|+.
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~ 79 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTS 79 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEE
Confidence 4788999999999999988876643222 244455553 2 2455556888999974 35654
No 324
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.09 E-value=0.0022 Score=46.70 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=54.3
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc----hhHhhhcC--CCcCcEEEEEcCCCCCcccccCCCC
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFN--VQGFPTILVFGADKDSPIPYEGART 254 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~~~~~~~--v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (428)
.++.|+.+||+.|+.....+++++..+ ..+.+..+|.+.+ .++.+..+ ..++|+|++ +++. -| .
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi---~g~~----ig--g 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV---DQKH----IG--G 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE---CCEE----Ec--C
Confidence 478899999999999999999998775 4577777777654 24555455 478999864 2321 23 3
Q ss_pred HHHHHHHHHHHH
Q 014216 255 AGAIESFALEQL 266 (428)
Q Consensus 255 ~~~i~~fi~~~~ 266 (428)
.++|.++...++
T Consensus 72 ~~~~~~~~~~~~ 83 (85)
T PRK11200 72 CTDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHHhc
Confidence 677888777664
No 325
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.08 E-value=0.0083 Score=51.78 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=55.9
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------------cHhHHHHcCCc
Q 014216 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQEYGIR 101 (428)
Q Consensus 50 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------------~~~l~~~~~v~ 101 (428)
.+|+.|++.||+.|....+.+.++..++++ .+.++.|.++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456678899999999999999999999875 36666666542 23678888876
Q ss_pred ----c----ccEEEEEe-CCCCCccccC----CCCcchHHHHHHH
Q 014216 102 ----G----FPTIKVFV-PGKPPVDYQG----ARDVKPIAEFALQ 133 (428)
Q Consensus 102 ----~----~P~~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 133 (428)
+ .|+.+++. +|+....+.+ .++.+++.+.+..
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2 34577775 4544333333 3445555555543
No 326
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.06 E-value=0.011 Score=51.40 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCe-EEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------------cHhHHHHc
Q 014216 48 NGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQEY 98 (428)
Q Consensus 48 ~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------------~~~l~~~~ 98 (428)
++. +|+.|++.||+.|....+.+.++..++.. .+.++.|.++. +..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 454 56788899999999999999999999864 35666666652 23677888
Q ss_pred CCc-------cccEEEEEe-CCCCCcc--cc--CCCCcchHHHHHH
Q 014216 99 GIR-------GFPTIKVFV-PGKPPVD--YQ--GARDVKPIAEFAL 132 (428)
Q Consensus 99 ~v~-------~~P~~~~~~-~g~~~~~--~~--g~~~~~~l~~~i~ 132 (428)
|+. ..|+++++. +|+.... |. ..++.+.+.+.+.
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~ 153 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALK 153 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 873 679999996 4544222 21 1244555555554
No 327
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.06 E-value=0.0013 Score=49.35 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=37.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH---h----HHHHcCCccccEEEEEeCCCC
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---S----LAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~----l~~~~~v~~~P~~~~~~~g~~ 114 (428)
-++.|..+||++|+++...|.+. + +.+..+|+++.+ + +.+..|.+.+|.+ |.+|+.
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~----~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~ 71 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL----G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL 71 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence 37789999999999999877654 2 344455665442 2 3333467899996 446654
No 328
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.06 E-value=0.0038 Score=52.62 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=32.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEE
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~ 84 (428)
..++.|+.|+...|++|+.+.+.+.++.+++++++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 46889999999999999999999999999887665553
No 329
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.03 E-value=0.0017 Score=46.53 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=38.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhH----HHHcCCccccEEEEEeCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL----AQEYGIRGFPTIKVFVPGK 113 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~P~~~~~~~g~ 113 (428)
++.|+.+||++|.++...|.+. .+.+-.+|++.++.. .+..|..++|+++ .+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 4678999999999999988753 245666677666544 3345788999964 3554
No 330
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.005 Score=46.36 Aligned_cols=65 Identities=20% Similarity=0.396 Sum_probs=51.2
Q ss_pred cCCeEEEEEEC--------CCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-------hHhhhcCC-CcCcEEEEEc
Q 014216 177 SKDLWIVEFFA--------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMSKFNV-QGFPTILVFG 240 (428)
Q Consensus 177 ~~~~~~v~f~~--------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~~~~~~~v-~~~P~i~~~~ 240 (428)
+++..+++|+. +|||.|....|.+.++-+.....+.|+.|+..+-+ .+....++ ..+|+++=++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 34457888884 69999999999999999988888999999876532 34555666 7889998886
Q ss_pred C
Q 014216 241 A 241 (428)
Q Consensus 241 ~ 241 (428)
+
T Consensus 104 ~ 104 (128)
T KOG3425|consen 104 R 104 (128)
T ss_pred C
Confidence 4
No 331
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.03 E-value=0.0041 Score=52.94 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=59.7
Q ss_pred cCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHhhhcC
Q 014216 177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------------EKSLMSKFN 229 (428)
Q Consensus 177 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------------~~~~~~~~~ 229 (428)
..++++|.|| +.||+.|....+.+.++...+.+ .+.+..|+.+. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3568899999 89999999999999999888864 35555555432 335677888
Q ss_pred CC------cCcEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 014216 230 VQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFAL 263 (428)
Q Consensus 230 v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~ 263 (428)
+. ..|+.+++..++.....+.+ ....+++...+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 75 35888888766544333321 236677766653
No 332
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.02 E-value=0.0028 Score=44.78 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=39.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHH----HcCCc-cccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ----EYGIR-GFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~v~-~~P~~~~~~~g~~ 114 (428)
++.|+.++|++|.++...|.+. .+.+-.+|++.+++..+ ..|.. ++|+++ .+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 5789999999999999888652 35667778776654433 35766 899864 45643
No 333
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.00 E-value=0.0031 Score=44.38 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH----hHHHHcCCccccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++.|+.+||++|+++...|++ ..+.+-.+|+++++ ++.+..+-..+|+++ .+|+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 678999999999999988875 23567777887665 455566788999964 35543
No 334
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.99 E-value=0.0026 Score=51.44 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.7
Q ss_pred cCCeEEEEEECCCChh-HhhHHHHHHHHHHHhcCC----eEEEEEeCCC
Q 014216 177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKGK----VKLGHVDCDS 220 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~a~~~~~~----~~f~~v~~~~ 220 (428)
..++++|.|+++||+. |....+.+.++.+.+.+. +.+..|+.+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4678999999999998 999999999999999763 8888887643
No 335
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.98 E-value=0.0037 Score=43.65 Aligned_cols=67 Identities=12% Similarity=0.314 Sum_probs=44.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhc----CCCcCcEEEEEcCCCCCcccccCCCCHHH
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF----NVQGFPTILVFGADKDSPIPYEGARTAGA 257 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~----~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (428)
++.|+++||++|..+...+.+. .+.+..++.+.+....+.+ ++..+|++++. +. .. +..+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~---~~---~i-~g~~~~~ 68 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIG---DE---HL-SGFRPDK 68 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEEC---CE---EE-ecCCHHH
Confidence 5789999999999988877752 4566667766655443333 67889998762 21 22 3346666
Q ss_pred HHHH
Q 014216 258 IESF 261 (428)
Q Consensus 258 i~~f 261 (428)
|..+
T Consensus 69 l~~~ 72 (73)
T cd02976 69 LRAL 72 (73)
T ss_pred HHhh
Confidence 6554
No 336
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.98 E-value=0.0053 Score=47.38 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=59.7
Q ss_pred chHHHhh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccE-EEEEeCCC
Q 014216 39 NFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT-IKVFVPGK 113 (428)
Q Consensus 39 ~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~-~~~~~~g~ 113 (428)
..++.+. +.++.++|.|...|-+.|.++...+.++++..+.-..++.||.++-+.+.+-|.+. -|. +++|.+++
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 3444443 45889999999999999999999999999999998889999999999999999999 775 55554444
No 337
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.97 E-value=0.0035 Score=45.03 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=47.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHH---HHcCCccccEEEEEeCCCCCccccCCCCcchHH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA---QEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA 128 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~ 128 (428)
++.|+.+||++|++....|.+ ..+.|-.+|++++++.. +..|...+|++++ ++..+ +..+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~~----~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLSW----SGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEEE----ecCCHHHHH
Confidence 678999999999999988854 23778888888776533 3457789999754 44222 234556565
Q ss_pred HHHH
Q 014216 129 EFAL 132 (428)
Q Consensus 129 ~~i~ 132 (428)
+++.
T Consensus 71 ~~~~ 74 (81)
T PRK10329 71 RLHP 74 (81)
T ss_pred HHHH
Confidence 5554
No 338
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.92 E-value=0.0092 Score=53.10 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=59.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc----------------------------cHhHHH
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 96 (428)
.++++++.|| +.||+.|....+.+.+...++.+ .+.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667777777 89999999999999999998874 24454444432 246888
Q ss_pred HcCCc-----cccEEEEEe-CCCCCccc----cCCCCcchHHHHHH
Q 014216 97 EYGIR-----GFPTIKVFV-PGKPPVDY----QGARDVKPIAEFAL 132 (428)
Q Consensus 97 ~~~v~-----~~P~~~~~~-~g~~~~~~----~g~~~~~~l~~~i~ 132 (428)
.||+. ..|+.+++. +|+....+ ...++.+++.+.|.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 89985 589999996 55542222 33445666655554
No 339
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.92 E-value=0.12 Score=51.78 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=113.4
Q ss_pred HhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCC
Q 014216 174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253 (428)
Q Consensus 174 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~ 253 (428)
+.+-.+++-+.++.+.|+.|..+...++++++.- +++.+-..+. . ...|++.+.+++...-++|.|--
T Consensus 14 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~---~--------~~~p~~~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 14 LELLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL---D--------VRKPSFSITRPGEDTGVRFAGIP 81 (517)
T ss_pred HHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC---C--------CCCCEEEEEcCCccceEEEEecC
Confidence 3333444444444447999999999999998764 5666643221 1 23699999875555568999988
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceecCchhhhhhhc-CCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEE
Q 014216 254 TAGAIESFALEQLETNVAPPEVTELTSQDVMEEKC-GSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFV 332 (428)
Q Consensus 254 ~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~ 332 (428)
.-.++..|+...+......+. ++. ...+.+. -.++..+-.|+...+...+ .....+.++|...+ . +.+-
T Consensus 82 ~g~Ef~s~i~~i~~~~~~~~~---l~~-~~~~~i~~~~~~~~i~~fv~~~Cp~Cp----~~v~~~~~~a~~~~-~-i~~~ 151 (517)
T PRK15317 82 MGHEFTSLVLALLQVGGHPPK---LDQ-EVIEQIKALDGDFHFETYVSLSCHNCP----DVVQALNLMAVLNP-N-ITHT 151 (517)
T ss_pred ccHHHHHHHHHHHHhcCCCCC---CCH-HHHHHHHhcCCCeEEEEEEcCCCCCcH----HHHHHHHHHHHhCC-C-ceEE
Confidence 888999998777554433333 322 2222222 2345545555444343333 34466677777544 3 8888
Q ss_pred EecCCCchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHHH
Q 014216 333 WAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVK 383 (428)
Q Consensus 333 ~id~~~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~ 383 (428)
.+|...++++.+.+++.. .|++++ +. .. .+.|..+.+++.+.+.
T Consensus 152 ~id~~~~~~~~~~~~v~~--VP~~~i-~~--~~--~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 152 MIDGALFQDEVEARNIMA--VPTVFL-NG--EE--FGQGRMTLEEILAKLD 195 (517)
T ss_pred EEEchhCHhHHHhcCCcc--cCEEEE-CC--cE--EEecCCCHHHHHHHHh
Confidence 999999999999999986 999955 32 22 2446566655555543
No 340
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.88 E-value=0.0036 Score=43.92 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=39.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH---hHHHHcCCccccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++.|+.+||++|.++...|.+. .+.+-.+|++++. .+.+..|...+|.++ .+|+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE
Confidence 6889999999999998888742 3556666766544 233445889999963 46653
No 341
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0031 Score=45.21 Aligned_cols=51 Identities=16% Similarity=0.401 Sum_probs=36.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-----hHHHHc-CCccccEEEE
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEY-GIRGFPTIKV 108 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~v~~~P~~~~ 108 (428)
++.|..++|++|++....|. ...+.+..++.+... +..++. |.+++|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 67899999999999998887 223555555555433 334444 7899999654
No 342
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.85 E-value=0.0043 Score=44.66 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=58.7
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCC-CCcccccCCCCHHHHH
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK-DSPIPYEGARTAGAIE 259 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~-~~~~~y~g~~~~~~i~ 259 (428)
.+++|..+.|.-|......+..++.... +.+-.||+++++++.++|+.. +|.+.+-.... .......+.++.+.|.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~~-IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGYR-IPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCTS-TSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcCC-CCEEEEcCcccccccceeCCCCCHHHHH
Confidence 3688999999999999999988765543 888899999999999999974 79876642111 1133445788999999
Q ss_pred HHHH
Q 014216 260 SFAL 263 (428)
Q Consensus 260 ~fi~ 263 (428)
+|++
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 343
>PRK13189 peroxiredoxin; Provisional
Probab=96.83 E-value=0.011 Score=51.60 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=57.3
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc---------------------------ccHhHHHH
Q 014216 47 ANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQE 97 (428)
Q Consensus 47 ~~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~---------------------------~~~~l~~~ 97 (428)
.++. +|+.|++.||+.|....+.+.+++.+++. .+.++.|.++ .+..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 3554 45577799999999999999999988874 3555555443 12367788
Q ss_pred cCCc-------cccEEEEEe-CCCCCccc----cCCCCcchHHHHHHH
Q 014216 98 YGIR-------GFPTIKVFV-PGKPPVDY----QGARDVKPIAEFALQ 133 (428)
Q Consensus 98 ~~v~-------~~P~~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~ 133 (428)
||+. ..|+.+++. +|...... ...++.+++.+.+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 8875 468888886 45432222 234556666666643
No 344
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.82 E-value=0.0051 Score=50.16 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=35.1
Q ss_pred CeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 014216 179 DLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (428)
Q Consensus 179 ~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (428)
+++++.|+ +.||+.|....+.+.++.+.+.+ .+.+..|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 67777777 89999999999999999999975 58888887554
No 345
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.82 E-value=0.0076 Score=45.36 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=61.4
Q ss_pred CCCcEEeCccchHHHHhhcCCeEEEEEECC--CChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEE
Q 014216 159 SNESIELNSSNFDELVLKSKDLWIVEFFAP--WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~--~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i 236 (428)
......++..++..++ ......+++|..+ .++.+....-++=++.+.|.+.+..+.+.-.....+..+||+..+|++
T Consensus 8 ~~g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp T-TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred hcCCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 4467888899999886 4455555555542 245556666688889999999999888886677899999999999999
Q ss_pred EEEcCC
Q 014216 237 LVFGAD 242 (428)
Q Consensus 237 ~~~~~~ 242 (428)
++++.+
T Consensus 87 vf~R~g 92 (107)
T PF07449_consen 87 VFFRDG 92 (107)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999865
No 346
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.80 E-value=0.0077 Score=40.44 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=39.1
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch----hHhhhcCCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK----SLMSKFNVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~----~~~~~~~v~~~P~i~~ 238 (428)
++.|..++|++|......+++ ..+.+-.+|.+.++ ++.+..|..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999999999854 24777777777764 3444448999999886
No 347
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.76 E-value=0.0077 Score=48.47 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=36.4
Q ss_pred cCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 014216 177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (428)
Q Consensus 177 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (428)
.+++++|.|+ +.||+.|....+.+.++...+.. .+.|..|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4678888888 78999999999999999999853 58888887654
No 348
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.70 E-value=0.0056 Score=45.48 Aligned_cols=59 Identities=31% Similarity=0.426 Sum_probs=43.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcC--cc------------------------------cHhHHHHcC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--NE------------------------------HQSLAQEYG 99 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~--~~------------------------------~~~l~~~~~ 99 (428)
++.|+.+.|++|..+.+.+.++.....+++.+..... .. +...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999866666655544432 11 124567789
Q ss_pred CccccEEEEEe
Q 014216 100 IRGFPTIKVFV 110 (428)
Q Consensus 100 v~~~P~~~~~~ 110 (428)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999987643
No 349
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.70 E-value=0.0045 Score=50.95 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=68.5
Q ss_pred CCcEEeC-ccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 160 NESIELN-SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 160 ~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
....++. ..++.+.. ....-+++.||-+.-..|+-+-.-++.+|+.+- ..+|..||....+-++.+++|+-.|++++
T Consensus 66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 3455665 55666654 456678899999888899999999999999886 58999999999999999999999999999
Q ss_pred EcCCC
Q 014216 239 FGADK 243 (428)
Q Consensus 239 ~~~~~ 243 (428)
|+++.
T Consensus 144 ~k~g~ 148 (211)
T KOG1672|consen 144 FKNGK 148 (211)
T ss_pred EEcCE
Confidence 98654
No 350
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.67 E-value=0.013 Score=48.12 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=34.6
Q ss_pred cCCeEEEEEECC-CChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 014216 177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (428)
Q Consensus 177 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (428)
..++++|.||+. ||+.|....+.+.++.+.+.+ .+.+..|+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 356888889875 788899999999999888865 47777776544
No 351
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.012 Score=44.62 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=66.4
Q ss_pred chHHHHh-hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcc
Q 014216 169 NFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI 247 (428)
Q Consensus 169 ~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~ 247 (428)
..+.++. ...+.+++-|.-+|.+.|-.+-..+..+|+..+.-..++.+|.++-+++-+-|++...|++++|-++....+
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmki 92 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKI 92 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEE
Confidence 3444443 346688999999999999999999999999999889999999999999999999999999999865544333
Q ss_pred c
Q 014216 248 P 248 (428)
Q Consensus 248 ~ 248 (428)
.
T Consensus 93 D 93 (142)
T KOG3414|consen 93 D 93 (142)
T ss_pred e
Confidence 3
No 352
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.63 E-value=0.012 Score=50.52 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=49.9
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc----------------------------cHhHHH
Q 014216 47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (428)
Q Consensus 47 ~~~~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 96 (428)
.+++++|.||+ .||+.|....+.+.++++++.. .+.++.|+++. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46788999994 7899999999999999998885 35666666541 236778
Q ss_pred HcCCc------cccEEEEEeCCC
Q 014216 97 EYGIR------GFPTIKVFVPGK 113 (428)
Q Consensus 97 ~~~v~------~~P~~~~~~~g~ 113 (428)
.||+. .+|+.+++.+..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G 137 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKG 137 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCC
Confidence 88885 468888886443
No 353
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.62 E-value=0.013 Score=50.94 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=57.9
Q ss_pred CCCeEE-EEEECCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCcc---------------------------cHhHHHH
Q 014216 47 ANGVVL-VEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE 97 (428)
Q Consensus 47 ~~~~~l-v~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---------------------------~~~l~~~ 97 (428)
.+++++ +.|++.||+.|....+.|.+.+.++.. .+.++.+.+|. +..++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 355544 577899999999999999999999864 35566565542 2366777
Q ss_pred cCCc-------cccEEEEEe-CCCCCccc----cCCCCcchHHHHHHH
Q 014216 98 YGIR-------GFPTIKVFV-PGKPPVDY----QGARDVKPIAEFALQ 133 (428)
Q Consensus 98 ~~v~-------~~P~~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~ 133 (428)
||+. ..|+.+++. +|.....+ .-.++.+++.+.+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 8863 468888885 44432221 223566667666653
No 354
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.58 E-value=0.0069 Score=43.62 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=39.3
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc-h----hHhhhcCCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE-K----SLMSKFNVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~-~----~~~~~~~v~~~P~i~~ 238 (428)
++.|+++|||.|..+...+.++.. .+.+..++...+ . .+.+..|..++|.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 578999999999999999998755 456666665544 1 3455668889998743
No 355
>PRK15000 peroxidase; Provisional
Probab=96.51 E-value=0.019 Score=49.37 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=60.9
Q ss_pred cCCeEEEEEEC-CCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHhh
Q 014216 177 SKDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMS 226 (428)
Q Consensus 177 ~~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~~~~ 226 (428)
..+.+++.||+ .||+.|....+.|.+.+++|.. .+.+..|+++. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 35688999999 5999999999999999998875 36666665543 224556
Q ss_pred hcCCC------cCcEEEEEcCCCCCcccccCC----CCHHHHHHHHHH
Q 014216 227 KFNVQ------GFPTILVFGADKDSPIPYEGA----RTAGAIESFALE 264 (428)
Q Consensus 227 ~~~v~------~~P~i~~~~~~~~~~~~y~g~----~~~~~i~~fi~~ 264 (428)
.||+. ..|+.+++.+++.....+.+. .+.+++...+..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 67776 578888887665444433332 466777766643
No 356
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.42 E-value=0.028 Score=47.60 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=58.7
Q ss_pred CCeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCC-------------------------CchhHhhhcCC
Q 014216 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD-------------------------SEKSLMSKFNV 230 (428)
Q Consensus 178 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~-------------------------~~~~~~~~~~v 230 (428)
.+++++.|| +.||+.|....+.|.+....|.+ .+.+..|+.+ .+..+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 457888888 89999999999999999888854 3444444433 34567888887
Q ss_pred C----cC--cEEEEEcCCCCCccccc----CCCCHHHHHHHHH
Q 014216 231 Q----GF--PTILVFGADKDSPIPYE----GARTAGAIESFAL 263 (428)
Q Consensus 231 ~----~~--P~i~~~~~~~~~~~~y~----g~~~~~~i~~fi~ 263 (428)
. +. |+.+++.+++.....+. ...+.+++...+.
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 3 45 88888876654322221 2246777777663
No 357
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.40 E-value=0.012 Score=47.60 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=43.1
Q ss_pred cCCeEEEEEECCC-ChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch---hHhhhcCCCcCc
Q 014216 177 SKDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFP 234 (428)
Q Consensus 177 ~~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~~~~~~~v~~~P 234 (428)
..+++++.||+.| |+.|....+.+.++.+.+. .+.+..|+.+... .+.+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 3568999999988 6999999999999999985 6888888876543 344455543334
No 358
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.39 E-value=0.013 Score=41.86 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=40.3
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc---hhHhhhcCCCcCcEEEE
Q 014216 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE---KSLMSKFNVQGFPTILV 238 (428)
Q Consensus 179 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~~~~~~~~v~~~P~i~~ 238 (428)
...++.|..+||++|......+++. .+.+-.+|++.+ .++.+..|...+|.+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 4457889999999999999999742 466666776655 34555668889998864
No 359
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.33 E-value=0.012 Score=42.88 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=50.6
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc----hhHhhhcCC--CcCcEEEEEcCCCCCcccccCCCCH
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNV--QGFPTILVFGADKDSPIPYEGARTA 255 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~~~~~~~v--~~~P~i~~~~~~~~~~~~y~g~~~~ 255 (428)
++.|..+||++|......++++...+. .+.+..+|...+ .++.+..|- .++|.+.+ +++ +-|. .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi---~g~----~igG--~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV---DEK----HVGG--C 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE---CCE----EecC--H
Confidence 678899999999999999998765442 366666666542 356666663 68898854 221 1233 6
Q ss_pred HHHHHHHHHH
Q 014216 256 GAIESFALEQ 265 (428)
Q Consensus 256 ~~i~~fi~~~ 265 (428)
++|.++..++
T Consensus 72 ~dl~~~~~~~ 81 (86)
T TIGR02183 72 TDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHhc
Confidence 7788887665
No 360
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.32 E-value=0.023 Score=48.95 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=58.7
Q ss_pred CCeEEE-EEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCC---------------------------CchhHhhhc
Q 014216 178 KDLWIV-EFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD---------------------------SEKSLMSKF 228 (428)
Q Consensus 178 ~~~~~v-~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~---------------------------~~~~~~~~~ 228 (428)
.+.+++ .|++.||+.|....+.|.++...|.+ .+.+..|+++ .+..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 344444 57899999999999999888888764 3555555443 234577777
Q ss_pred CCC------cCcEEEEEcCCCCCcccc----cCCCCHHHHHHHHHHH
Q 014216 229 NVQ------GFPTILVFGADKDSPIPY----EGARTAGAIESFALEQ 265 (428)
Q Consensus 229 ~v~------~~P~i~~~~~~~~~~~~y----~g~~~~~~i~~fi~~~ 265 (428)
|+. .+|+.+++.+++...... .+..+.+++...+...
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 874 479999997665332222 3346888887776554
No 361
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.27 E-value=0.016 Score=40.56 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=45.7
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhc---CCCcCcEEEEEcCCCCCcccccCCCCHHHHH
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF---NVQGFPTILVFGADKDSPIPYEGARTAGAIE 259 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~---~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~ 259 (428)
..|..++|+.|+.....+.+ ..+.|-.+|.++++...+.+ |..++|.+++- +. ..-|.++++.|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~---g~---~~~~G~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVAD---GD---LSWSGFRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEEC---CC---cEEeccCHHHHH
Confidence 56888999999999999875 25677777777766554444 87889987662 21 123556776665
Q ss_pred H
Q 014216 260 S 260 (428)
Q Consensus 260 ~ 260 (428)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 362
>PRK10638 glutaredoxin 3; Provisional
Probab=96.24 E-value=0.015 Score=42.02 Aligned_cols=55 Identities=9% Similarity=0.235 Sum_probs=39.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH----hHHHHcCCccccEEEEEeCCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++.|..+||++|+++...+.+. .+.+..+|++.++ .+.+..|...+|++++ +|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 6688899999999999888753 2556667776654 3445557889998743 5543
No 363
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.20 E-value=0.017 Score=40.04 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=37.6
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh----HhhhcCCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----~~~~~~v~~~P~i~~ 238 (428)
++.|+++||++|+.....+.+.. +.+..+|...+.+ +.+..+...+|.+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57889999999999999998764 6666777766553 334456678887744
No 364
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.19 E-value=0.023 Score=42.40 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhH----HHHcCCccccEEEEEeCCC
Q 014216 58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL----AQEYGIRGFPTIKVFVPGK 113 (428)
Q Consensus 58 ~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~P~~~~~~~g~ 113 (428)
+||++|.++...|.+.. +.+..+|++++++. .+..|...+|.++ .+|+
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGE 76 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 89999999998886642 45667787766543 3445778999964 4564
No 365
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.95 E-value=0.097 Score=40.55 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=57.9
Q ss_pred cchHHHHh-hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 168 SNFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 168 ~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
-..++++. +..+.+++.|..+|-+.|-.+-..+.++|++.+.-..++.||.++-+++.+.|.+. -|..++|
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMF 80 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEE
Confidence 34455553 35778999999999999999999999999999998999999999999999999999 4775555
No 366
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.94 E-value=0.044 Score=48.26 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=55.4
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEE--e----------------C--------------------
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV--D----------------C-------------------- 218 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v--~----------------~-------------------- 218 (428)
+.+..++.|..+.||+|+.+.+.+.++.+ ..+.+..+ . |
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 34578889999999999999988776543 11222211 1 1
Q ss_pred ------CCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 014216 219 ------DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (428)
Q Consensus 219 ------~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (428)
..+..+++++||+++|++++ .+ +. ...|....+.|..++...
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv~-~~-G~---~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIVL-SN-GT---LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEEE-cC-Ce---EeeCCCCHHHHHHHHHHc
Confidence 11335888999999999994 32 22 237888899999888654
No 367
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.90 E-value=0.025 Score=41.59 Aligned_cols=48 Identities=23% Similarity=0.451 Sum_probs=34.2
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHh----HHHHcCCccccEEEEEeCCC
Q 014216 58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK 113 (428)
Q Consensus 58 ~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~P~~~~~~~g~ 113 (428)
+||++|+++...|.+.. +.+..+|++.+++ +.+..|.+.+|.++ .+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 79999999998886642 5566677766554 34445888999974 4665
No 368
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.89 E-value=0.039 Score=38.84 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=36.9
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHh----hhcCCC-cCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM----SKFNVQ-GFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~----~~~~v~-~~P~i~~ 238 (428)
++.|..++|++|......+++. .+.|-.++.+.+++.. +..|.. ++|.+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5688899999999999999862 4666667776654433 345666 7897754
No 369
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.85 E-value=0.054 Score=46.73 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred eEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHhhhcCCC
Q 014216 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKFNVQ 231 (428)
Q Consensus 180 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~~~~~~~v~ 231 (428)
.+++.|++.||+.|....+.+.++++.|.+ .+.+..|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 445578899999999999999999999865 36777666543 23567778865
Q ss_pred c--------CcEEEEEcCCCCCcccccC----CCCHHHHHHHHHHH
Q 014216 232 G--------FPTILVFGADKDSPIPYEG----ARTAGAIESFALEQ 265 (428)
Q Consensus 232 ~--------~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~~ 265 (428)
. .|+.+++.+++.....+.+ ..+.+++...+...
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 3467777666543333323 34567777766443
No 370
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.84 E-value=0.037 Score=46.47 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCceEE
Q 014216 54 EFYAPWCGHCQALTPIWEKAATVLKGVATV 83 (428)
Q Consensus 54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~ 83 (428)
+|+.|.|+.|-.+.|.|.++...++.++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence 699999999999999999999999986544
No 371
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.78 E-value=0.029 Score=40.03 Aligned_cols=51 Identities=16% Similarity=0.422 Sum_probs=36.3
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHh----hhcCCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM----SKFNVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~----~~~~v~~~P~i~~ 238 (428)
++.|..++|++|......+++. .+.|-.+|.+.++... +..|...+|.+++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3578899999999999999853 3555566666665443 3446778898754
No 372
>PHA03050 glutaredoxin; Provisional
Probab=95.76 E-value=0.049 Score=41.49 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=37.3
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC---c----hhHhhhcCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---E----KSLMSKFNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---~----~~~~~~~~v~~~P~i~~ 238 (428)
.++.|..+|||+|......+++..-... .|..+|.+. . ..+.+..|.+++|.|++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 4678999999999999999987633211 344444443 2 24555567888999855
No 373
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.74 E-value=0.059 Score=46.29 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=49.5
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEE--EEe--------------------------------------
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG--HVD-------------------------------------- 217 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~--~v~-------------------------------------- 217 (428)
.+..++.|+.+.|++|+.+.+.+.+ ..+.+.+. .+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5688999999999999999987765 11121111 111
Q ss_pred -----CCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHH
Q 014216 218 -----CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261 (428)
Q Consensus 218 -----~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (428)
...+..+++++|++++|+++ +.++. ...|..+.+.|..+
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~ 196 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEAL 196 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhh
Confidence 11134588889999999997 54322 24677777777665
No 374
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.74 E-value=0.031 Score=41.92 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=35.2
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh-------HhhhcCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS-------LMSKFNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-------~~~~~~v~~~P~i~~ 238 (428)
.++.|..+|||+|......+.+. .+.|..+|.+..++ +.+..|..++|.|.+
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 46789999999999999988764 24444555554422 333346778998744
No 375
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.72 E-value=0.17 Score=42.56 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCc-cchHHHHhhcCC--eEEEEEECCCChhHhhHHHHHHHH
Q 014216 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNS-SNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKA 203 (428)
Q Consensus 127 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~~ 203 (428)
|..+=.+.|+...+....|. .-.-|.++++ .+|...+...-+ ..+|..|.+.-+.|..+...+.-+
T Consensus 116 L~~yr~qrm~eMrq~l~~gp-----------~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cL 184 (273)
T KOG3171|consen 116 LRKYRRQRMQEMRQKLSFGP-----------RYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCL 184 (273)
T ss_pred HHHHHHHHHHHHHHHhhcCC-----------ccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHh
Confidence 33444445555544443433 2345778755 777777644423 567899999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCC
Q 014216 204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD 242 (428)
Q Consensus 204 a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~ 242 (428)
|..|. .++|..+-. ++-....+|....+|++++|+.+
T Consensus 185 AAeyP-~vKFckiks-s~~gas~~F~~n~lP~LliYkgG 221 (273)
T KOG3171|consen 185 AAEYP-IVKFCKIKS-SNTGASDRFSLNVLPTLLIYKGG 221 (273)
T ss_pred hccCC-ceeEEEeee-ccccchhhhcccCCceEEEeeCC
Confidence 99996 689998863 55677889999999999999844
No 376
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.62 E-value=0.06 Score=37.71 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=39.1
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch----hHhhhcCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK----SLMSKFNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~----~~~~~~~v~~~P~i~~ 238 (428)
.++.|+.++|+.|+.....+++ ..+.|..+|....+ ++.+..+-..+|.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678899999999999999886 24667777777655 3555557778898855
No 377
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.61 E-value=0.066 Score=38.41 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=52.1
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHh---hhcCCCcCcEEEEEcCCCCCcccccCCCCHHH
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM---SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~---~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (428)
.+..|..++|++|......+.+ ..+.|-.+|.+.+++.. +..|...+|.+++ ++.. -+.++.+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i---~~~~----~~Gf~~~~ 68 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA---GDLS----WSGFRPDM 68 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE---CCEE----EecCCHHH
Confidence 3678899999999999988864 35778888887766533 3446778898865 2221 24678888
Q ss_pred HHHHHHHHH
Q 014216 258 IESFALEQL 266 (428)
Q Consensus 258 i~~fi~~~~ 266 (428)
|.+.+-.+.
T Consensus 69 l~~~~~~~~ 77 (81)
T PRK10329 69 INRLHPAPH 77 (81)
T ss_pred HHHHHHhhh
Confidence 888876553
No 378
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.57 E-value=0.049 Score=45.90 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=36.0
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD 219 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~ 219 (428)
..++++|.|+++||+.|.+ .+.++++.++|++ .+.+..+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3579999999999999975 8899999999976 4888888874
No 379
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.047 Score=39.05 Aligned_cols=51 Identities=18% Similarity=0.428 Sum_probs=36.4
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-----hHhhhc-CCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKF-NVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~~~~~~-~v~~~P~i~~ 238 (428)
++.|..++||+|......+.. ..+.|..++.+... +..++. |.+++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 577889999999999988883 34555555544433 444555 7889998877
No 380
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.52 E-value=0.1 Score=46.50 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=57.5
Q ss_pred CCeEEEEEE-CCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHhhh
Q 014216 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK 227 (428)
Q Consensus 178 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~~~~~ 227 (428)
.+.+++.|| +.||+.|....+.|.+..+.|.+ .+.+..|.++. +..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 456777777 79999999999999998888864 25555554433 3457778
Q ss_pred cCCC-----cCcEEEEEcCCCCCcccc----cCCCCHHHHHHHHH
Q 014216 228 FNVQ-----GFPTILVFGADKDSPIPY----EGARTAGAIESFAL 263 (428)
Q Consensus 228 ~~v~-----~~P~i~~~~~~~~~~~~y----~g~~~~~~i~~fi~ 263 (428)
||+. ..|+.+++.+++.....+ ....+.+++...+.
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 8875 368889987655433322 22346677766653
No 381
>PRK10824 glutaredoxin-4; Provisional
Probab=95.52 E-value=0.041 Score=42.26 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHH----HcCCccccEEEEEeCCCC
Q 014216 58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ----EYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 58 ~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~v~~~P~~~~~~~g~~ 114 (428)
|||++|+++...|.+.. +.+..+|.+.+.++.. .-|-+.+|.+++ +|+.
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~ 80 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGEL 80 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence 69999999998887752 3344456655554333 347789999654 6654
No 382
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.39 E-value=0.067 Score=37.32 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=37.1
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch---hHhhhcCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~~~~~~~v~~~P~i~~ 238 (428)
.++.|..++|+.|......+++. .+.|..+|.+.+. .+.+..|...+|.+.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 36789999999999998888852 4566666665543 2334458888998744
No 383
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.36 E-value=0.068 Score=44.35 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCCcEEeCccchHHHhhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccE
Q 014216 28 SSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105 (428)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~ 105 (428)
.-..|..++..+|-+.+.+. +-.|+|..|..+-+-|.-+...+..++..++. +.|+++=....- .-|-=...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI---pNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI---PNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc---CCCcccCCCe
Confidence 44678899999888777543 45799999999999999999999999999997 677766544322 1244467899
Q ss_pred EEEEeCCCCCccccC-------CCCcchHHHHHHH
Q 014216 106 IKVFVPGKPPVDYQG-------ARDVKPIAEFALQ 133 (428)
Q Consensus 106 ~~~~~~g~~~~~~~g-------~~~~~~l~~~i~~ 133 (428)
+++|..|.....+-| ..+.+.+..++.+
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 999999876444433 2245566665543
No 384
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.25 E-value=0.1 Score=45.35 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=57.5
Q ss_pred eEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHhhhcCCC
Q 014216 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKFNVQ 231 (428)
Q Consensus 180 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~~~~~~~v~ 231 (428)
.+++.|.+.||+.|....+.|.++..+|.+ .+.+..|+++. +..+++.||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 345688899999999999999999988864 35555555443 33567777863
Q ss_pred -------cCcEEEEEcCCCCCcccc--c--CCCCHHHHHHHHHH
Q 014216 232 -------GFPTILVFGADKDSPIPY--E--GARTAGAIESFALE 264 (428)
Q Consensus 232 -------~~P~i~~~~~~~~~~~~y--~--g~~~~~~i~~fi~~ 264 (428)
..|+++++.+++.....+ . ...+.++|.+.+..
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 469999997665433222 1 12467777777643
No 385
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.082 Score=39.75 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=40.4
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH-hHHH----HcCCccccEEEEEeCCCC
Q 014216 49 GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-SLAQ----EYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 49 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~----~~~v~~~P~~~~~~~g~~ 114 (428)
..-+|.|..+||++|+++...|.+ +.....++.+|-+.+. ++.+ .-+.+.+|.+++ +|+.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 334567899999999998877776 4545667777766443 3333 335679999654 6654
No 386
>PRK13189 peroxiredoxin; Provisional
Probab=95.07 E-value=0.14 Score=44.87 Aligned_cols=85 Identities=9% Similarity=0.113 Sum_probs=55.3
Q ss_pred eEEEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHhhhcCCC
Q 014216 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKFNVQ 231 (428)
Q Consensus 180 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~~~~~~~v~ 231 (428)
.+++.|.++||+.|....+.|.+++..|.+ .+.+..|+++. +..+++.||+.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 444566789999999999999998888864 35555554432 34567777764
Q ss_pred -------cCcEEEEEcCCCCCccccc----CCCCHHHHHHHHHH
Q 014216 232 -------GFPTILVFGADKDSPIPYE----GARTAGAIESFALE 264 (428)
Q Consensus 232 -------~~P~i~~~~~~~~~~~~y~----g~~~~~~i~~fi~~ 264 (428)
..|+.+++.+++....... ...+.+++...+..
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 3578888876654322221 33466777776644
No 387
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.06 E-value=0.096 Score=38.59 Aligned_cols=59 Identities=34% Similarity=0.508 Sum_probs=43.9
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeC--CCc------------------------------hhHhhhcC
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC--DSE------------------------------KSLMSKFN 229 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~--~~~------------------------------~~~~~~~~ 229 (428)
+..|+...|++|..+.+.+.++.....+++.+..... ... .....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999876667666555432 211 23566789
Q ss_pred CCcCcEEEEEc
Q 014216 230 VQGFPTILVFG 240 (428)
Q Consensus 230 v~~~P~i~~~~ 240 (428)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999863
No 388
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.98 E-value=0.011 Score=52.66 Aligned_cols=128 Identities=22% Similarity=0.366 Sum_probs=90.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEc-CcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcch
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP 126 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd-~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 126 (428)
..++=..||+.||+..+...|.+.-....+.. +....++ ...-+.+..+|++.+.|++.+..... ..+|.|.++...
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~-~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC-PASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecccc-chhhcccccHHH
Confidence 66899999999999999999999887777663 3333332 23457888999999999988876654 588999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHH
Q 014216 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN 206 (428)
Q Consensus 127 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~ 206 (428)
|..|..+.++. .+.++ + .+........+|.+||++.....+...-+...
T Consensus 154 Lv~fy~~i~~~------------------------~v~ie------~-~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 154 LVNFYTEITPM------------------------SVLIE------I-LDCTSCLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred HHHHHHhhccc------------------------hhccc------c-cCcccceeeeEeccccCcccccCcCCCcchhc
Confidence 99999877421 11111 1 11122466788889988766666666555554
Q ss_pred hc
Q 014216 207 LK 208 (428)
Q Consensus 207 ~~ 208 (428)
.+
T Consensus 203 r~ 204 (319)
T KOG2640|consen 203 RP 204 (319)
T ss_pred cc
Confidence 43
No 389
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.97 E-value=0.2 Score=44.73 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=53.5
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe----------------CCC---------------------
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD----------------CDS--------------------- 220 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~----------------~~~--------------------- 220 (428)
.+.+++.|+-+.|++|++++.....+.+. +.+.+..+- |..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 44678889999999999998876654432 122222111 000
Q ss_pred -------------chhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 014216 221 -------------EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (428)
Q Consensus 221 -------------~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (428)
+..+.+++|++++|++++-+.++ .+....|....+.|.+.+
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence 12367788999999999986433 344557887888877664
No 390
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.86 E-value=0.17 Score=42.11 Aligned_cols=103 Identities=16% Similarity=0.301 Sum_probs=72.6
Q ss_pred CCCCcEEeCccchHHHHhhcCC--eEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcE
Q 014216 158 DSNESIELNSSNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~ 235 (428)
.-..|..++..++.+.+..... -++|..|...-+.|.-+...++.+|.+|. .++|+.+-.+. ....|.-...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~---cIpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATT---CIPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEeccccc---ccCCCcccCCCe
Confidence 4567889999888888755433 46778999999999999999999999997 57787763322 244566677899
Q ss_pred EEEEcCCCCCccc------ccCC-CCHHHHHHHHHHH
Q 014216 236 ILVFGADKDSPIP------YEGA-RTAGAIESFALEQ 265 (428)
Q Consensus 236 i~~~~~~~~~~~~------y~g~-~~~~~i~~fi~~~ 265 (428)
|++|..|. .... +-|. .+.+++..++.+.
T Consensus 165 l~VY~~G~-lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGA-LKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecch-HHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99997653 2222 2222 3556666665444
No 391
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.71 E-value=0.065 Score=51.55 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHh---HHHH---------cCCccccEEEEEeCCC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS---LAQE---------YGIRGFPTIKVFVPGK 113 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~v~~~P~~~~~~~g~ 113 (428)
++.|+.+||++|+++...|.+. .+.+-.+|+++++. +.++ .|.+++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 7889999999999999888663 36777788876653 2222 36789999754 554
No 392
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.35 E-value=0.3 Score=41.96 Aligned_cols=86 Identities=9% Similarity=0.161 Sum_probs=55.6
Q ss_pred CCeEEEEEEC-CCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHhhh
Q 014216 178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK 227 (428)
Q Consensus 178 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~~~~~ 227 (428)
.+.+++.||+ .||+.|......+.++++.|.+ .+.+..|+++. +.++++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4677888885 7899998888889998888875 36666666543 2346677
Q ss_pred cCCC------cCcEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 014216 228 FNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFAL 263 (428)
Q Consensus 228 ~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~ 263 (428)
||+. .+|+.+++.+++.....+.+ ..+.+++.+.+.
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 7764 35788888765532222212 235555555553
No 393
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.34 E-value=0.28 Score=42.61 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=56.5
Q ss_pred CCeE-EEEEECCCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHhhhc
Q 014216 178 KDLW-IVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKF 228 (428)
Q Consensus 178 ~~~~-~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~~~~~~ 228 (428)
++.+ ++.|.++||+.|....+.|.+.+..|.+ .+.+..|+++. +..+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 3444 4477789999999999999999998864 36666665543 23455666
Q ss_pred CCC-------cCcEEEEEcCCCCCccccc----CCCCHHHHHHHHHH
Q 014216 229 NVQ-------GFPTILVFGADKDSPIPYE----GARTAGAIESFALE 264 (428)
Q Consensus 229 ~v~-------~~P~i~~~~~~~~~~~~y~----g~~~~~~i~~fi~~ 264 (428)
|+. ..|+.+++.+++.....+. -..+.+++...+..
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 753 2577888866553333221 22477787777644
No 394
>PRK10638 glutaredoxin 3; Provisional
Probab=94.16 E-value=0.21 Score=35.96 Aligned_cols=51 Identities=12% Similarity=0.335 Sum_probs=37.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh----HhhhcCCCcCcEEEE
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----~~~~~~v~~~P~i~~ 238 (428)
++.|..++|++|......+++. .+.+..+|++.+.+ +.+..|...+|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5688889999999999998863 45666677766543 344557778998744
No 395
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.90 E-value=0.78 Score=39.86 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=48.6
Q ss_pred ccCCCCCcEEeCccchHH--HhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEc
Q 014216 25 LYGSSSPVVQLTPNNFKS--KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87 (428)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~--~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd 87 (428)
......++..++.+.... ...+.++|.++.|.|-.||+-..-...+.++++++.+...|..|-
T Consensus 77 ~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 77 GPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 344567888898877321 223568999999999999999999999999999999865554443
No 396
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.89 E-value=0.36 Score=35.95 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh----HhhhcCCCcCcEEEE
Q 014216 188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (428)
Q Consensus 188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----~~~~~~v~~~P~i~~ 238 (428)
+|||+|......+.+. .+.|..+|...+.+ +.+..|...+|.+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 8999999999999874 35666777765543 444456678898865
No 397
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.59 E-value=0.3 Score=41.09 Aligned_cols=87 Identities=14% Similarity=0.264 Sum_probs=67.0
Q ss_pred CCcEEeCc-cchHHHhhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEE
Q 014216 30 SPVVQLTP-NNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106 (428)
Q Consensus 30 ~~~~~l~~-~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~ 106 (428)
..|.+++. +.|...+-++ ....+|+.|-++-+-|..+-..+.-+|..++- +.|.++-.+. .....+|...++|++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceE
Confidence 45677765 4566344222 34688999999999999999999999999886 7888877653 345678899999999
Q ss_pred EEEeCCCCCccc
Q 014216 107 KVFVPGKPPVDY 118 (428)
Q Consensus 107 ~~~~~g~~~~~~ 118 (428)
.+|++|+.+..|
T Consensus 216 liYkgGeLIgNF 227 (273)
T KOG3171|consen 216 LIYKGGELIGNF 227 (273)
T ss_pred EEeeCCchhHHH
Confidence 999999875544
No 398
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=93.55 E-value=0.19 Score=42.24 Aligned_cols=34 Identities=24% Similarity=0.565 Sum_probs=27.1
Q ss_pred EEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe
Q 014216 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217 (428)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~ 217 (428)
+|..|.|+.|-...+.+.++...+...+.+-.|-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 6899999999999999999999999976666554
No 399
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.37 E-value=1.5 Score=38.16 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=49.5
Q ss_pred CCCCcEEeCccc---hHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCC
Q 014216 158 DSNESIELNSSN---FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219 (428)
Q Consensus 158 ~~~~v~~l~~~~---~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~ 219 (428)
.+++++.++.+. +.++ ...++|.++.|.+=.||+-..-...|++++++|.+.+.|..|.+.
T Consensus 80 Pns~vv~l~g~~~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred CCCceEeeCCCcceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 467788888766 3333 356889999999998999999999999999999988777776643
No 400
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.26 Score=49.16 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=61.9
Q ss_pred EeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCcccHhHHHHcC--------Ccc
Q 014216 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYG--------IRG 102 (428)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~~--------v~~ 102 (428)
....+.|. +..+.++|+++-....||..|+-|..+= .+++..++..+.-++||-++-|++-+.|. --+
T Consensus 30 pW~~eAf~-~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 30 PWGEEAFA-KAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred ccCHHHHH-HHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCC
Confidence 34456677 6778899999999999999999998743 66888888888888999888776655552 458
Q ss_pred ccEEEEE-eCCCC
Q 014216 103 FPTIKVF-VPGKP 114 (428)
Q Consensus 103 ~P~~~~~-~~g~~ 114 (428)
+|..+++ ++|++
T Consensus 109 WPLtVfLTPd~kP 121 (667)
T COG1331 109 WPLTVFLTPDGKP 121 (667)
T ss_pred CceeEEECCCCce
Confidence 9987777 45554
No 401
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.95 E-value=0.34 Score=35.49 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh----HhhhcCCCcCcEEEE
Q 014216 188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (428)
Q Consensus 188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----~~~~~~v~~~P~i~~ 238 (428)
+||++|......+.+. .+.|..+|...+.+ +.+..|..++|.+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 6999999999988874 25666666655543 444457778998744
No 402
>PRK10824 glutaredoxin-4; Provisional
Probab=92.70 E-value=0.34 Score=37.24 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhH----hhhcCCCcCcEEEE
Q 014216 188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL----MSKFNVQGFPTILV 238 (428)
Q Consensus 188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~----~~~~~v~~~P~i~~ 238 (428)
+|||+|......+.+.. +.+..+|...+.++ .+.-|-.++|.|.+
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 59999999999998762 34444555555433 33346678898777
No 403
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.42 E-value=1.2 Score=37.81 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcC-ceEE
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKG-VATV 83 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~ 83 (428)
|.+|+...|++|..+.+.+.++...+.+ ++.+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~ 34 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEW 34 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 6789999999999999999999999843 3444
No 404
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=92.38 E-value=3.2 Score=36.39 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCeEEEEEECCCChh-hhhhhHHHHHHHHHhcCc------eEEEEEcCccc--------------------------HhH
Q 014216 48 NGVVLVEFYAPWCGH-CQALTPIWEKAATVLKGV------ATVAALDANEH--------------------------QSL 94 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~------v~~~~vd~~~~--------------------------~~l 94 (428)
++.+|++|.-+.||. |=.....+.++..+.+.+ =.|+.+|-.++ .++
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 789999999999886 655555666666655532 15777776432 277
Q ss_pred HHHcCCcccc-------------EEEEE---eCCCCCccccCCCCcchHHHHHHHHHH
Q 014216 95 AQEYGIRGFP-------------TIKVF---VPGKPPVDYQGARDVKPIAEFALQQIK 136 (428)
Q Consensus 95 ~~~~~v~~~P-------------~~~~~---~~g~~~~~~~g~~~~~~l~~~i~~~l~ 136 (428)
|++|.|..-+ ++++| ++|+.+..|...++++++.+-|.+++.
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 8888776433 34555 456655555558889999888887763
No 405
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.32 E-value=0.68 Score=32.04 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=49.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHh-cCceEEEEEcCcccHhHHHHcCCccccEEEEEe
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVL-KGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~-~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~ 110 (428)
.+..|-+...+.+++....+.++.+.+ ++.+.+-.+|..+++++++.++|-.+||++-..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 455666777788999988888887776 457888899999999999999999999976443
No 406
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.77 E-value=0.59 Score=37.73 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=37.4
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH----hHHHHcCC----ccccEEEEEeCCC
Q 014216 52 LVEFYAP------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGI----RGFPTIKVFVPGK 113 (428)
Q Consensus 52 lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v----~~~P~~~~~~~g~ 113 (428)
+|.|+++ +|++|+++...|... .+.+-.+|++.++ ++.+.++- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 4566677 899999999888654 3667778887655 34444554 68898654 554
No 407
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=91.39 E-value=0.087 Score=47.07 Aligned_cols=86 Identities=21% Similarity=0.483 Sum_probs=68.6
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe-CCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHH
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAG 256 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~ 256 (428)
...+-..||+.||+..+...+.|.-....|...-.|+ ++ ...-.++..++|+.+.|++.+.. ...+..|.|..+..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~-vee~~~lpsv~s~~~~~~~ps~~~~n--~t~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA-VEESQALPSVFSSYGIHSEPSNLMLN--QTCPASYRGERDLA 152 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcccccccc-HHHHhhcccchhccccccCCcceeec--cccchhhcccccHH
Confidence 5578889999999999999999999888887322333 32 12235788899999999999985 44689999999999
Q ss_pred HHHHHHHHHH
Q 014216 257 AIESFALEQL 266 (428)
Q Consensus 257 ~i~~fi~~~~ 266 (428)
+|.+|..+.+
T Consensus 153 sLv~fy~~i~ 162 (319)
T KOG2640|consen 153 SLVNFYTEIT 162 (319)
T ss_pred HHHHHHHhhc
Confidence 9999988875
No 408
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=91.30 E-value=2.9 Score=32.84 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=50.6
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccc--cEEEEEeCCCCCccccCCCCcchH
Q 014216 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF--PTIKVFVPGKPPVDYQGARDVKPI 127 (428)
Q Consensus 50 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~--P~~~~~~~g~~~~~~~g~~~~~~l 127 (428)
.-++.+++|.|+=|......++ .++ +.+..+..++-..+-+++||..- -.-..+.+|. ..+|....+++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~G-f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy---~vEGHVPa~aI 96 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----ANG-FEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGY---YVEGHVPAEAI 96 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hCC-cEEEEeecCcHHHHHHhcCCChhhccccEEEEcCE---EEeccCCHHHH
Confidence 4577899999999998776665 123 56666677777778888887521 1122334553 45788888888
Q ss_pred HHHHHH
Q 014216 128 AEFALQ 133 (428)
Q Consensus 128 ~~~i~~ 133 (428)
.+++.+
T Consensus 97 ~~ll~~ 102 (149)
T COG3019 97 ARLLAE 102 (149)
T ss_pred HHHHhC
Confidence 888764
No 409
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=1.1 Score=33.69 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=37.0
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch-----hHhhhcCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKFNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~~~~~~~v~~~P~i~~ 238 (428)
.+|.|..+||+.|..+...|.. +.....+..+|-.... .+.+--|-+++|.+.+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 4577899999999998888887 5555666666644332 2333334667898776
No 410
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=90.98 E-value=0.62 Score=38.17 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCeEEEEEE-CCCChhhhhh-hHHHHHHHHHhcC-ce-EEEEEcCcc---cHhHHHHcCCc-ccc
Q 014216 48 NGVVLVEFY-APWCGHCQAL-TPIWEKAATVLKG-VA-TVAALDANE---HQSLAQEYGIR-GFP 104 (428)
Q Consensus 48 ~~~~lv~f~-~~~C~~C~~~-~~~~~~~~~~~~~-~v-~~~~vd~~~---~~~l~~~~~v~-~~P 104 (428)
++++++.|| ..||+.|-.. .+.+.+...++.. .+ .++.+.++. ..++++++++. .+|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 455555555 8899999998 9999998888874 24 466666653 44577787772 444
No 411
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.79 E-value=0.92 Score=37.22 Aligned_cols=43 Identities=30% Similarity=0.474 Sum_probs=35.7
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHh--cCCeEEEEEeCC
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCD 219 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~ 219 (428)
..+++++.|+...|++|..+.+.+.++.+.+ .+++.|...+..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 3467899999999999999999999999998 677888877653
No 412
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.29 E-value=0.81 Score=37.07 Aligned_cols=37 Identities=46% Similarity=0.673 Sum_probs=29.8
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEE
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGH 215 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~ 215 (428)
.++.++.|+..+|++|+.+.+.+.++...+. ++.+..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEE
Confidence 4678899999999999999999999877764 444444
No 413
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=1.2 Score=36.25 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=42.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEcCc---ccHhHHHHcCCccccE
Q 014216 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN---EHQSLAQEYGIRGFPT 105 (428)
Q Consensus 47 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~---~~~~l~~~~~v~~~P~ 105 (428)
.+++++++|| ..+++-|-...-.|.+...+++. ...++.|..| ....+++++++. +|.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~L 91 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FPL 91 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-cee
Confidence 4668899998 66889999998899888888876 4566666665 445677777766 544
No 414
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=89.25 E-value=2.7 Score=30.76 Aligned_cols=82 Identities=9% Similarity=0.095 Sum_probs=47.5
Q ss_pred eecCchhhhhhhcCCCCeEEEEecCCccchhhhchhHHHHHHHHHHHHhhcCcceEEEecCCCchhHHHHhCCCCCCCce
Q 014216 276 TELTSQDVMEEKCGSAAICFVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPA 355 (428)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~~id~~~~~~~~~~~gl~~~~~P~ 355 (428)
.++.+.+.+.. ...++.+||+++.+..+.. ...++.+|..+++. -.|...-+... . .....+.|
T Consensus 2 kef~~~~eL~~-id~~kr~iIgYF~~~~~~e-------Y~~f~kvA~~lr~d-C~F~v~~G~~~----~--~~~~~~~~- 65 (91)
T cd03070 2 KEFRNLDELNN-VDRSKRNIIGYFESKDSDE-------YDNFRKVANILRDD-CSFLVGFGDVT----K--PERPPGDN- 65 (91)
T ss_pred ceecCHHHHHh-hCcCCceEEEEEcCCCChh-------HHHHHHHHHHHhhc-CeEEEEecccc----c--cccCCCCC-
Confidence 45556666665 4556778999986632222 27899999999998 66655433211 1 11111244
Q ss_pred EEEEecc-CCccccCCCCC
Q 014216 356 LVALNVK-KGVYTPLKSAF 373 (428)
Q Consensus 356 ~~i~~~~-~~~~~~~~~~~ 373 (428)
++++++. ......|.|.+
T Consensus 66 ~i~frp~~~~~~~~y~G~~ 84 (91)
T cd03070 66 IIYFPPGHNAPDMVYLGSL 84 (91)
T ss_pred eEEECCCCCCCceEEccCC
Confidence 4477765 33335566665
No 415
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.00 E-value=5.1 Score=29.56 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC-CccccCCCCcc
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVK 125 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~ 125 (428)
++...++.|..+. ..|..+...+++++.. .+++.+...+... ..|++.+..+|+. -.+|.|...-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-SdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASL-SDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHh-CCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 3555666776665 9999999888888875 4556664433321 4799998877633 47899988888
Q ss_pred hHHHHHHH
Q 014216 126 PIAEFALQ 133 (428)
Q Consensus 126 ~l~~~i~~ 133 (428)
++..++..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88887753
No 416
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.91 E-value=1.2 Score=43.03 Aligned_cols=52 Identities=12% Similarity=0.288 Sum_probs=38.5
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchh---Hhhh---------cCCCcCcEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS---LMSK---------FNVQGFPTILV 238 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~---~~~~---------~~v~~~P~i~~ 238 (428)
.++.|..+|||+|......+.+. .+.|..+|+++++. +.++ .|.+++|.+.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 36789999999999999988863 47777788776553 2222 36778898866
No 417
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.84 E-value=0.81 Score=38.27 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=34.9
Q ss_pred cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe
Q 014216 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217 (428)
Q Consensus 177 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~ 217 (428)
..++.++.|+...||+|+.+.+.+..+.+.+.+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 45788999999999999999999999999887777766543
No 418
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=87.88 E-value=2.7 Score=30.27 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=58.8
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHH-hcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCc
Q 014216 49 GVVLVEFYAPWCGHCQALTPIWEKAATV-LKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV 124 (428)
Q Consensus 49 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~ 124 (428)
.+++=.|.+..-+.+++....+.++.+. +.+.+..-.+|..+++++++.++|-.+||++-..++ +..+.-|..+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccc
Confidence 4566677788889999999888887664 456678889999999999999999999997655443 35666676653
No 419
>PRK09301 circadian clock protein KaiB; Provisional
Probab=87.18 E-value=2.9 Score=31.15 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=61.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHH-hcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcc
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATV-LKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~ 125 (428)
..+++=.|.+..-+..++....+.++.+. +.+.+..-.||..+++++++.++|-.+||++-..+. +..+.-|..+..
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd~ 82 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSDR 82 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-CcceeecccccH
Confidence 45677788899999999999998887664 456778889999999999999999999997655443 356777776543
No 420
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.98 E-value=4.6 Score=35.80 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=26.7
Q ss_pred hHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHHHH
Q 014216 93 SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134 (428)
Q Consensus 93 ~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 134 (428)
.+++++|+.++|++++ +|+ .+.|..+.+.+...|...
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHh
Confidence 5677889999999655 333 677888877777766543
No 421
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=83.60 E-value=19 Score=28.59 Aligned_cols=91 Identities=9% Similarity=0.037 Sum_probs=59.8
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCceEEEEEcCccc------------------HhHHHHcCCccc
Q 014216 45 LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEH------------------QSLAQEYGIRGF 103 (428)
Q Consensus 45 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~------------------~~l~~~~~v~~~ 103 (428)
.++.|+.+|+.+++.-..+..+-... +.+.+.++.++.+-.-|+... ....+.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 34589999999999764443333322 344444555655555565432 124556778999
Q ss_pred cEEEEEeCC----CCCccccCCCCcchHHHHHHHHH
Q 014216 104 PTIKVFVPG----KPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 104 P~~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
|.+.++... ..+.+..|..+++++..-+...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 998888433 22677899999999988877654
No 422
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=82.57 E-value=1.7 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=31.8
Q ss_pred cHhHHHHcCCccccEEEEEeCCC-----------CCccccCCCCcchHHHHHH
Q 014216 91 HQSLAQEYGIRGFPTIKVFVPGK-----------PPVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 91 ~~~l~~~~~v~~~P~~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~ 132 (428)
+|.+.++|+|+.+|++++.+++. ......|..+.+...+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 69999999999999999987763 2344567777666655555
No 423
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=81.73 E-value=8.5 Score=26.34 Aligned_cols=51 Identities=6% Similarity=0.035 Sum_probs=33.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc-cHhHHHHcCCccccEEE
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-HQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~P~~~ 107 (428)
++|+.++|++|++..-.+..... .+....+|... ..++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999998766544322 24455566543 34565666777999974
No 424
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=81.33 E-value=16 Score=31.47 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=43.4
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhc-C---c--eEEEEEcCc-ccHhHHHHcCC-ccccEEEE
Q 014216 47 ANGVVLVEFYAPWCG-HCQALTPIWEKAATVLK-G---V--ATVAALDAN-EHQSLAQEYGI-RGFPTIKV 108 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~-~C~~~~~~~~~~~~~~~-~---~--v~~~~vd~~-~~~~l~~~~~v-~~~P~~~~ 108 (428)
++++++|.|.=+.|+ .|-.....+.++.+++. + + +.++.+|-+ ..++..++|.. ...|.+..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ 136 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIG 136 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeee
Confidence 689999999877776 47778888888887777 2 2 556666655 34677888877 55554433
No 425
>PHA03075 glutaredoxin-like protein; Provisional
Probab=80.58 E-value=3.1 Score=31.50 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=27.0
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcC
Q 014216 49 GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88 (428)
Q Consensus 49 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~ 88 (428)
+.++|.|.-|.|+.|+.....+.++..+ ..+.+||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede----Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE----YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc----ccEEEEEe
Confidence 4689999999999999999888555554 34555553
No 426
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=80.47 E-value=21 Score=26.35 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHH
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (428)
+.+.++.|..+. +.|..+....+++|..- +++.+-..+... ..|++.+...+...-++|.|--.-.+
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhE 85 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHE 85 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchh
Confidence 344555666544 78889988888888754 456654322111 36999998765444588988777777
Q ss_pred HHHHHH
Q 014216 258 IESFAL 263 (428)
Q Consensus 258 i~~fi~ 263 (428)
+.+|+.
T Consensus 86 f~Slil 91 (94)
T cd02974 86 FTSLVL 91 (94)
T ss_pred HHHHHH
Confidence 777765
No 427
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=80.16 E-value=15 Score=26.82 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=40.9
Q ss_pred hcCCeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCC-CCCcccccCCCC
Q 014216 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-KDSPIPYEGART 254 (428)
Q Consensus 176 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~~~~y~g~~~ 254 (428)
+.++..+|.|+.+ .-..-...|+++|..+++.-.|...--+. .......+ +.+++|++. ......|.|.++
T Consensus 14 d~~kr~iIgYF~~---~~~~eY~~f~kvA~~lr~dC~F~v~~G~~----~~~~~~~~-~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 14 DRSKRNIIGYFES---KDSDEYDNFRKVANILRDDCSFLVGFGDV----TKPERPPG-DNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred CcCCceEEEEEcC---CCChhHHHHHHHHHHHhhcCeEEEEeccc----cccccCCC-CCeEEECCCCCCCceEEccCCC
Confidence 4455666666654 22567889999999999874444321111 11111223 445666654 444578888873
No 428
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=79.43 E-value=24 Score=26.50 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=67.5
Q ss_pred eCccchHHHHhh-cCCeEEEEEECCCChhHhhHHHHHHHHHHHhcC--CeEEEEEeCCCchhH----hhhcCCC-cCcEE
Q 014216 165 LNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSL----MSKFNVQ-GFPTI 236 (428)
Q Consensus 165 l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~----~~~~~v~-~~P~i 236 (428)
++.++..+.... -+...++.|..+-.+.-.++.+.++++|+.+.. .+.|+-||-+..+-+ -+-|+|. .-|.|
T Consensus 6 l~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqI 85 (120)
T cd03074 6 LKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQI 85 (120)
T ss_pred ccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCce
Confidence 444444444422 245788899988888889999999999999976 599999987776533 3345544 23888
Q ss_pred EEEcCCCCCc--ccccCC---CCHHHHHHHHHHH
Q 014216 237 LVFGADKDSP--IPYEGA---RTAGAIESFALEQ 265 (428)
Q Consensus 237 ~~~~~~~~~~--~~y~g~---~~~~~i~~fi~~~ 265 (428)
=+..-..... ....+. -+.++|.+||.+-
T Consensus 86 GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 86 GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 7774433222 222222 5778899998653
No 429
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=79.40 E-value=10 Score=26.28 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=44.9
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHh-cCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAANNL-KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~~~-~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
.+.+|-+...+.+........++-+.+ .+.+.+-.||..+.+.+++.+++-.+|+++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 455666665566677777777766655 55688888899999999999999999997644
No 430
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=79.30 E-value=3.8 Score=31.68 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=25.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 92 (428)
..|+.++|+.|+++...+++- .+.+-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 478899999999999777662 2556667776544
No 431
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=77.87 E-value=3.4 Score=35.66 Aligned_cols=40 Identities=20% Similarity=0.500 Sum_probs=32.8
Q ss_pred CCeEEEEEECCCChhHhhHHHHH---HHHHHHhcCCeEEEEEe
Q 014216 178 KDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVD 217 (428)
Q Consensus 178 ~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~ 217 (428)
.++.+|.|+.-.|++|..+.+.+ ..+.+.+.+.+.|..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 35679999999999999999876 78888888777777653
No 432
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.73 E-value=4.7 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=23.8
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~ 222 (428)
++|++..||.|......+..+ .+.+-.|++.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm 38 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESM 38 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhh
Confidence 789999999999887777654 3444455555543
No 433
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.71 E-value=2.2 Score=32.21 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=23.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~ 90 (428)
+..|+.++|+.|++....+++. .+.+-.+|..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc------CCCcEEEeecc
Confidence 3578999999999998777652 24555566644
No 434
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=77.59 E-value=9.3 Score=30.88 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=35.6
Q ss_pred EEEEECC------CChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch----hHhhhcCC----CcCcEEEE
Q 014216 182 IVEFFAP------WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK----SLMSKFNV----QGFPTILV 238 (428)
Q Consensus 182 ~v~f~~~------~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~----~~~~~~~v----~~~P~i~~ 238 (428)
++.|+++ +|++|......++.. .+.|-.+|.+.+. ++.+.++. ..+|.|.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566777 899999999988864 4667777776654 34444454 56787766
No 435
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.27 E-value=13 Score=25.97 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=39.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc----cHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI 127 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l 127 (428)
+..++.++|++|++..-.+.... +.+-.++++. ..++.+..+...+|++.. .+|.. . ......|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~-~----l~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV-Q----MFESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe-E----EEcHHHH
Confidence 45677889999998876654432 2233334432 234444446678998743 22222 1 2345567
Q ss_pred HHHHHH
Q 014216 128 AEFALQ 133 (428)
Q Consensus 128 ~~~i~~ 133 (428)
.+|+.+
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 777754
No 436
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=76.26 E-value=1.5 Score=31.36 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=43.7
Q ss_pred EECCCChhhhhhhHHHHHHHHHh-cCceEEEEEcCcccHhHHHHcCCccccEEE
Q 014216 55 FYAPWCGHCQALTPIWEKAATVL-KGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 55 f~~~~C~~C~~~~~~~~~~~~~~-~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~ 107 (428)
|-+..-+.++++...+..+.+.. .+.+.+-.||..+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44556667788888888887774 457889999999999999999999999975
No 437
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=76.06 E-value=29 Score=26.80 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred EEEecCCccchhhhchhHHHHHHHHHHHHhhcCcc-eEEEecCCCch-----------hHHHHhCCCCCCCceEEEEecc
Q 014216 295 FVSFLPDILDSKAEGRNKYLEMLLSVAEKFKRGHY-SFVWAAAGKQP-----------DLENRVGVGGYGYPALVALNVK 362 (428)
Q Consensus 295 vi~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~f~~id~~~~~-----------~~~~~~gl~~~~~P~~~i~~~~ 362 (428)
+|.|.++. .........+.+.+....+..+.+ .|..++..... .+.+.|+++. ..-.++++...
T Consensus 13 lvv~aps~---~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~-~~f~~vLiGKD 88 (118)
T PF13778_consen 13 LVVFAPSA---DDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPP-GGFTVVLIGKD 88 (118)
T ss_pred EEEECCCC---CCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCC-CceEEEEEeCC
Confidence 44555442 222334455666665556666654 44444544444 7889999886 33556677666
Q ss_pred CCccccCCCCCCHHHHHHHHHHH
Q 014216 363 KGVYTPLKSAFELEHIVEFVKEA 385 (428)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~fi~~~ 385 (428)
++.-..+..+.+.+.|-..|+..
T Consensus 89 G~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 89 GGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CcEEEecCCCCCHHHHHHHHhCC
Confidence 66666778899999999888765
No 438
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=76.03 E-value=4 Score=28.01 Aligned_cols=52 Identities=6% Similarity=0.100 Sum_probs=33.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc----ccHhHHHHcCCccccEEEE
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----EHQSLAQEYGIRGFPTIKV 108 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~P~~~~ 108 (428)
.+|+.++|++|++..-.+....-. .....++.. ...++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467889999999998776554222 233444432 2345566666778999753
No 439
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=74.25 E-value=4.3 Score=30.56 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=41.2
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc----hhHhhhcCCCcCcEEEEEcCCCCCcccc----cCCCC
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNVQGFPTILVFGADKDSPIPY----EGART 254 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~~~~~~~v~~~P~i~~~~~~~~~~~~y----~g~~~ 254 (428)
..|+.++|+.|+.....+++. .+.|-.+|..++ .++.+-++-.+.+.--+++..+...... ...++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 578899999999998888763 344555554432 2333333322222223333222111110 23566
Q ss_pred HHHHHHHHHHH
Q 014216 255 AGAIESFALEQ 265 (428)
Q Consensus 255 ~~~i~~fi~~~ 265 (428)
.+++..++.++
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 77777777766
No 440
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=74.24 E-value=9.9 Score=25.22 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=32.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH--hHHHHcCCccccEEE
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ--SLAQEYGIRGFPTIK 107 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~P~~~ 107 (428)
..|+.++|+.|++....+....- .+....++..... ++.+..+...+|++.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 54 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLE 54 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEE
Confidence 46788999999988877655422 2334444443322 245556777899865
No 441
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.39 E-value=3.4 Score=31.24 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=23.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 91 (428)
+..|+.++|+.|+++...+.+- .+.+-.+|..++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 3578999999999998766543 245555665544
No 442
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=73.29 E-value=16 Score=25.33 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=41.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
+..|+.++|+.|++..-.+....-. ..+..+|.....++ +.-+...+|++..=..|.... ..+...|.+|+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~----l~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ----LVDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE----EEcHHHHHHHH
Confidence 4578889999999998655443221 23333343222333 345667899975421111111 23456677777
Q ss_pred HHHH
Q 014216 132 LQQI 135 (428)
Q Consensus 132 ~~~l 135 (428)
.+.+
T Consensus 73 ~~~~ 76 (77)
T cd03040 73 KTYL 76 (77)
T ss_pred HHHc
Confidence 7653
No 443
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=72.66 E-value=16 Score=30.42 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCeEEEEEECCCC-hhhhhhhHHHHHHHHHhcC---ceEEEEEcCc
Q 014216 47 ANGVVLVEFYAPWC-GHCQALTPIWEKAATVLKG---VATVAALDAN 89 (428)
Q Consensus 47 ~~~~~lv~f~~~~C-~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~ 89 (428)
.+++++|.|.-..| ..|-.....+.++.+.+.. ++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 58999999998888 5688777778777776553 3455444443
No 444
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=72.59 E-value=3.6 Score=31.44 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=24.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 91 (428)
+..|+.++|+.|+++...|++- .+.|-.+|..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc------CCceEEecccCC
Confidence 3578899999999999777552 256666676544
No 445
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=71.22 E-value=16 Score=29.85 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCeEEEEEEC-CCChhHhhHHHHHHHHHHHhcC-CeEEEEEeCCCc---hhHhhhcCCC
Q 014216 178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE---KSLMSKFNVQ 231 (428)
Q Consensus 178 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~---~~~~~~~~v~ 231 (428)
.+.++++||. .+++.|...+-.|......|.. .+.+.-|..++. +..++++++.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 4478888886 6789999999999999988876 466666665543 3567777766
No 446
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=71.06 E-value=11 Score=28.98 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.3
Q ss_pred cHhHHHHcCCccccEEEEEeC
Q 014216 91 HQSLAQEYGIRGFPTIKVFVP 111 (428)
Q Consensus 91 ~~~l~~~~~v~~~P~~~~~~~ 111 (428)
+|.+.++|+|+.+|++++..+
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 699999999999999988776
No 447
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=70.00 E-value=27 Score=24.10 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=45.5
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc-cHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHH
Q 014216 54 EFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 132 (428)
+++.++|++|++..-.+....- .+.+..++..+ ...+.+......+|++. .+|.. ..+...|.+|+.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~------l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV------LTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE------EESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEE------EeCHHHHHHHHH
Confidence 4678999999998755533221 34555666554 45677777778999985 55542 235667888887
Q ss_pred HH
Q 014216 133 QQ 134 (428)
Q Consensus 133 ~~ 134 (428)
+.
T Consensus 69 ~~ 70 (75)
T PF13417_consen 69 ER 70 (75)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 448
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=69.72 E-value=8.1 Score=30.44 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=29.9
Q ss_pred chhHhhhcCCCcCcEEEEEcCCC----------CCcccccCCCCHHHHHHHHH
Q 014216 221 EKSLMSKFNVQGFPTILVFGADK----------DSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 221 ~~~~~~~~~v~~~P~i~~~~~~~----------~~~~~y~g~~~~~~i~~fi~ 263 (428)
++.+.++|+|+.+|++++.+.+. .....-.|..+.+.-.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 68999999999999999997552 11223346666655555544
No 449
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=69.52 E-value=5.5 Score=31.51 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=24.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccH
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 92 (428)
+..|+.++|+.|+++...+.+- .+.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 5678899999999988666432 2455556665443
No 450
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.23 E-value=4.1 Score=28.12 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=36.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc--------------H--hHHHHcCCccccEEEEEeCCCC
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--------------Q--SLAQEYGIRGFPTIKVFVPGKP 114 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------~--~l~~~~~v~~~P~~~~~~~g~~ 114 (428)
++|++..|+.|..+..+++++.-.+. .|++... + +-.+..|--++|++. ..+|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd------~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall-~~d~~v 75 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYD------FVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALL-TDDGKV 75 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCce------eeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEE-eCCCcE
Confidence 78999999999999988877654433 2333221 1 234566778999964 456654
No 451
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.17 E-value=7.7 Score=32.61 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=32.7
Q ss_pred HhHHHHcCCccccEEEEEeCCCCCccccC--CCCcchHHHHHHHHH
Q 014216 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQG--ARDVKPIAEFALQQI 135 (428)
Q Consensus 92 ~~l~~~~~v~~~P~~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~l 135 (428)
..+++++|+.++||+.+-.+|+...--.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 57899999999999999998876433344 445667777776543
No 452
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=69.02 E-value=9.2 Score=26.12 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=29.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEE
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~ 107 (428)
.+++.++|++|++..-.+....-. +....++........+..+-..+|.+.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 357788999999887666443222 233344443333333444556789864
No 453
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.89 E-value=11 Score=28.56 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=26.9
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEe
Q 014216 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217 (428)
Q Consensus 179 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~ 217 (428)
+.++++|..|.|+-|+.....++++..+ +.+.+||
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede----Y~ilrVN 36 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE----YDILRVN 36 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc----ccEEEEE
Confidence 4578999999999999999988666554 4455554
No 454
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=66.18 E-value=21 Score=33.79 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=63.3
Q ss_pred cCCCeEEEEEECCCChhhhhhh-HHHHHHH--HHhcCceEEEEEcCc--ccHhHHHHcCCccccEEEEE-eCCCCCcccc
Q 014216 46 NANGVVLVEFYAPWCGHCQALT-PIWEKAA--TVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVF-VPGKPPVDYQ 119 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~-~~~~~~~--~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~P~~~~~-~~g~~~~~~~ 119 (428)
+.++.++|.|-+........+. -.|.+.. ..+...+..++|+.. ....+..-|-+..+|+++++ ..|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 3567788888888888888887 3444432 222233444455543 23467777889999999888 5577788889
Q ss_pred CCCCcchHHHHHHHHHH
Q 014216 120 GARDVKPIAEFALQQIK 136 (428)
Q Consensus 120 g~~~~~~l~~~i~~~l~ 136 (428)
|..++++|..-|.+...
T Consensus 96 g~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 96 GFVTADELASSIEKVWL 112 (506)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999888877544
No 455
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=65.80 E-value=25 Score=25.39 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=50.5
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHH-HhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCC
Q 014216 181 WIVEFFAPWCGHCKKLAPEWKKAAN-NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGART 254 (428)
Q Consensus 181 ~~v~f~~~~c~~c~~~~~~~~~~a~-~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (428)
.+=+|.+...+.+........++-+ .+.+.+..-.||..+.+.+++.+++-.+|+++=..+.. .-+.-|+++
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P--~rriiGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPP--VRKIIGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCC--cceeecccc
Confidence 4446667666777777777777755 44556777788989999999999999999976553322 233356654
No 456
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=65.51 E-value=8.9 Score=29.25 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=23.4
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~ 220 (428)
..|+.++|+.|+.....+++ ..+.|-.+|...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccC
Confidence 46889999999999888876 245555555544
No 457
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=65.40 E-value=22 Score=28.97 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=37.5
Q ss_pred CCeEEEEEE-CCCChhHhhH-HHHHHHHHHHhcC-Ce-EEEEEeCCCch---hHhhhcCC
Q 014216 178 KDLWIVEFF-APWCGHCKKL-APEWKKAANNLKG-KV-KLGHVDCDSEK---SLMSKFNV 230 (428)
Q Consensus 178 ~~~~~v~f~-~~~c~~c~~~-~~~~~~~a~~~~~-~~-~f~~v~~~~~~---~~~~~~~v 230 (428)
++.++++|| ..||+.|... ...|.+....|.. .+ .+..|..+... .+++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 345555555 5899999998 9999999999865 35 46777665543 46667666
No 458
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.29 E-value=85 Score=29.40 Aligned_cols=177 Identities=11% Similarity=0.162 Sum_probs=112.9
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCC-CccccCCCCcch
Q 014216 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP 126 (428)
Q Consensus 48 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~~ 126 (428)
.+++.+.-.......++.+...+.+++..- +++.+-..+ ....-|++.+-+.|.. -.+|.|..--.+
T Consensus 18 ~~~i~l~asldds~~s~~~~~ll~eia~~S-~kis~~~~~-----------~~~RkpSF~i~r~g~~~gv~FAglPlGHE 85 (520)
T COG3634 18 EQPIELVASLDDSEKSKEIKELLDEIASLS-DKISLEEDS-----------DLVRKPSFSINRPGEDQGVRFAGLPLGHE 85 (520)
T ss_pred cCCeEEEEecCcccccHHHHHHHHHHHhhc-cceeeeecC-----------ccccCCceeecCCCcccceEEecCcccch
Confidence 566666677777888888888888887754 445443221 1234588777777744 568888777777
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHHHHHHHHHH
Q 014216 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN 206 (428)
Q Consensus 127 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~ 206 (428)
+..++...++- ...-..++.+-..+.-.-.....+=-|++-.|..|-.....++-++ -
T Consensus 86 ftSlVLaLlqv---------------------~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~ms-v 143 (520)
T COG3634 86 FTSLVLALLQV---------------------GGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMS-V 143 (520)
T ss_pred HHHHHHHHHHh---------------------cCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHH-h
Confidence 77777666531 1111222222222221124556777788888999988887776554 4
Q ss_pred hcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 014216 207 LKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263 (428)
Q Consensus 207 ~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~ 263 (428)
+..++.-..+|-.-.++-.+.-+|..+|++.+- ++. .-+|.++.++|..-+-
T Consensus 144 lNp~I~H~~IdGa~Fq~Evear~IMaVPtvfln---Ge~--fg~GRmtleeilaki~ 195 (520)
T COG3634 144 LNPRIKHTAIDGALFQDEVEARNIMAVPTVFLN---GEE--FGQGRMTLEEILAKID 195 (520)
T ss_pred cCCCceeEEecchhhHhHHHhccceecceEEEc---chh--hcccceeHHHHHHHhc
Confidence 556788888876655555666688899998773 322 2258888888876653
No 459
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=64.64 E-value=10 Score=25.89 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=40.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc-cHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHH
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
.+|+.++|+.|++..-.+....-. .....+|..+ .+++.+......+|++. .+|.. ......|.+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 567889999999988666443322 3333455443 34555555667899763 33321 23445666666
Q ss_pred HH
Q 014216 132 LQ 133 (428)
Q Consensus 132 ~~ 133 (428)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 53
No 460
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=64.51 E-value=7.8 Score=26.65 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=33.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcc----cHhHHHHcCCccccEEE
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~P~~~ 107 (428)
.+|+.++|++|++..-.+....- .+....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46889999999987766654322 23444455422 35666666667899985
No 461
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=64.42 E-value=1e+02 Score=27.73 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=42.2
Q ss_pred CcEEeCccchHHHhhcCCCeEEEEEECCC------ChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHH----cCC
Q 014216 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPW------CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE----YGI 100 (428)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~v 100 (428)
...+|++..-+ .+..=++++-|.+|.+. -..-+.....|++.+..-++++.+-.+|.+.++...++ +|+
T Consensus 8 k~ysLS~~T~~-~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 8 KRYSLSDQTKK-VLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCccCCHHHHH-HHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 34455555444 33333556555555443 34444455555556655555899999999777766666 887
Q ss_pred cc
Q 014216 101 RG 102 (428)
Q Consensus 101 ~~ 102 (428)
..
T Consensus 87 ~~ 88 (271)
T PF09822_consen 87 QP 88 (271)
T ss_pred Cc
Confidence 76
No 462
>PRK12559 transcriptional regulator Spx; Provisional
Probab=64.10 E-value=8.2 Score=30.52 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=22.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 91 (428)
+..|+.++|+.|+++...|++- .+.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 5688899999999988666442 244555555433
No 463
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=62.45 E-value=9.3 Score=29.36 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=23.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 91 (428)
+..|+.++|+.|+++...+++. .+.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4578899999999998777652 245555666543
No 464
>PRK09301 circadian clock protein KaiB; Provisional
Probab=62.23 E-value=30 Score=25.86 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=52.7
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHH-HhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCH
Q 014216 179 DLWIVEFFAPWCGHCKKLAPEWKKAAN-NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA 255 (428)
Q Consensus 179 ~~~~v~f~~~~c~~c~~~~~~~~~~a~-~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~ 255 (428)
...+=+|.+...+.+........++-+ .+.+.+..-.||..+.+.+++.+++-.+|+++=..+.. .-+.-|+++.
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P--~rriiGDlsd 81 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPP--VRKIIGDLSD 81 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCC--cceeeccccc
Confidence 345557777767777777777777755 44556777788889999999999999999976543322 3334576543
No 465
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.09 E-value=12 Score=32.45 Aligned_cols=40 Identities=35% Similarity=0.479 Sum_probs=32.2
Q ss_pred hHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHHHHHH
Q 014216 93 SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136 (428)
Q Consensus 93 ~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l~ 136 (428)
..++++||+++|++++ +++ ....|.++++.+..-|.+.+.
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence 5678899999999877 443 466799999999888887764
No 466
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=62.00 E-value=36 Score=23.12 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=33.3
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC-chhHhhhcCCCcCcEEEE
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-EKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-~~~~~~~~~v~~~P~i~~ 238 (428)
++|+.++|+.|.+..-.+.+..- .+.+..++... .+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46778999999888766664322 35555665432 345555556778898854
No 467
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=61.02 E-value=5.5 Score=24.85 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHHHh
Q 014216 1 MRRSQLLVILTIFSFFA 17 (428)
Q Consensus 1 M~~~~ll~~~~~~~~~~ 17 (428)
|||+++|++|+-++.++
T Consensus 3 lKKsllLlfflG~ISlS 19 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLS 19 (46)
T ss_pred chHHHHHHHHHHHcccc
Confidence 78888888777666544
No 468
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=60.93 E-value=43 Score=24.09 Aligned_cols=53 Identities=8% Similarity=0.176 Sum_probs=33.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc-HhHHHHcCCccccEEE
Q 014216 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-QSLAQEYGIRGFPTIK 107 (428)
Q Consensus 51 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~P~~~ 107 (428)
.+.+|+.+.|++|++..-.+....- .+....++.... ..+.+......+|.+.
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~ 71 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALE 71 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEE
Confidence 3556678889999988755544322 244455555433 3455556677899975
No 469
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=59.95 E-value=40 Score=25.79 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEEcC
Q 014216 195 KLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (428)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~~~ 241 (428)
.+.+..+.+.+.....-....+ .-++.+.++|+|+.+|++++-+.
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v--~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGV--QIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcce--eEChhHHhhCCceEcCEEEEEcC
Confidence 5666666666555443211222 23689999999999999999875
No 470
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.93 E-value=14 Score=31.10 Aligned_cols=28 Identities=36% Similarity=0.726 Sum_probs=25.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKG 79 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~ 79 (428)
|.+|+.+.|++|....+.+.++.+.+++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6788999999999999999999999853
No 471
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=56.51 E-value=41 Score=29.86 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=37.4
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeC
Q 014216 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (428)
Q Consensus 46 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~ 111 (428)
..+|+.+++..+.||+.|....=.+-.+...+.. +.......+ + .-.-..+|++.+...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~--~----~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSD--P----YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecC--c----ccCCCCCCeEEEecC
Confidence 4689999999999999999887555555555554 322211111 1 112357899877643
No 472
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=56.08 E-value=45 Score=21.76 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=30.8
Q ss_pred EEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCch--hHhhhcCCCcCcEEEE
Q 014216 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK--SLMSKFNVQGFPTILV 238 (428)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~--~~~~~~~v~~~P~i~~ 238 (428)
+|+.++|+.|......+....- .+....++..... ++.+..+...+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5677889999988777765522 2444444432222 2445566677897764
No 473
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.87 E-value=14 Score=29.33 Aligned_cols=34 Identities=6% Similarity=0.155 Sum_probs=22.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 91 (428)
+..|+.++|+.|+++...+.+- .+.|-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 4578899999999987555431 245555665433
No 474
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.56 E-value=43 Score=34.15 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=75.7
Q ss_pred CCCCcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhHHH-HH--HHHHHHhcCCeEEEEEeCCCchhHhhhc------
Q 014216 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMSKF------ 228 (428)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~~~~~~------ 228 (428)
.+.+......+.|...- ..++|.++.....||-.|.-+.. .| .++|+.++..+.-++||-++-+++-+.|
T Consensus 24 nPV~W~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 24 NPVDWYPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CCccccccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence 56667778888888774 67889999999999999988855 45 6799999988999999877765544444
Q ss_pred -C-CCcCcEEEEEcCCCCCcccccC----------CCCHHHHHHHHHHHHh
Q 014216 229 -N-VQGFPTILVFGADKDSPIPYEG----------ARTAGAIESFALEQLE 267 (428)
Q Consensus 229 -~-v~~~P~i~~~~~~~~~~~~y~g----------~~~~~~i~~fi~~~~~ 267 (428)
. --+.|--+++.++++ + .|-| .-....|..-|.+.|.
T Consensus 103 ~tG~GGWPLtVfLTPd~k-P-FfagTY~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK-P-FFAGTYFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred hccCCCCceeEEECCCCc-e-eeeeeecCCcccCCCcCHHHHHHHHHHHHH
Confidence 3 346899999987653 2 2222 1234556666666664
No 475
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=55.25 E-value=19 Score=30.59 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=31.3
Q ss_pred cHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHH
Q 014216 91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 91 ~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 132 (428)
+|.+.++|+|+.+|++++.... ......|..+...-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHHHHHHHH
Confidence 6899999999999999987553 3456678887766555554
No 476
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=53.79 E-value=26 Score=26.90 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=24.2
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 014216 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~ 221 (428)
..|+.++|+.|+.....+++ ..+.|-.+|..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCC
Confidence 46888999999999988886 2455666665543
No 477
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=51.76 E-value=11 Score=27.03 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=41.6
Q ss_pred EECCCChhHhhHHHHHHHHHHHh-cCCeEEEEEeCCCchhHhhhcCCCcCcEEEE
Q 014216 185 FFAPWCGHCKKLAPEWKKAANNL-KGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (428)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~-~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~ 238 (428)
|-+...+.+.......+.+.+.. .+.+..-.||..+.+.+++.+++-.+|+++=
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 44444455667777777777764 4478888999999999999999999998764
No 478
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=51.68 E-value=19 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~ 89 (428)
+..|+.+.|..|+++...+++- .+.+-.+|.-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 4678899999999988655432 2445555554
No 479
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=51.01 E-value=29 Score=25.35 Aligned_cols=24 Identities=4% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCC
Q 014216 376 EHIVEFVKEAGRGGKGNLPLDGTP 399 (428)
Q Consensus 376 ~~i~~fi~~~~~g~~~~~~~~~~p 399 (428)
+.-..||+++........||+...
T Consensus 35 q~~q~Wl~sI~ekd~nlvPIGK~~ 58 (92)
T PF15243_consen 35 QQHQAWLQSIAEKDNNLVPIGKPA 58 (92)
T ss_pred HHHHHHHHHHHHhccCcCccCCCC
Confidence 466789999988877777777655
No 480
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=50.88 E-value=72 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=28.5
Q ss_pred HHHHHHH-HHHHhhcCcceEEEecCCC------chhHHHHhCCCCCCCceEEE
Q 014216 313 YLEMLLS-VAEKFKRGHYSFVWAAAGK------QPDLENRVGVGGYGYPALVA 358 (428)
Q Consensus 313 ~~~~~~~-~a~~~~~~~~~f~~id~~~------~~~~~~~~gl~~~~~P~~~i 358 (428)
..+.++. +.++|.+++|.|.|||-.. ..+++.++-=...-+|.+++
T Consensus 21 TyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i 73 (93)
T PF07315_consen 21 TYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI 73 (93)
T ss_dssp HHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE
T ss_pred HHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE
Confidence 3344444 7789999999999999542 22566666555556888755
No 481
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=50.41 E-value=34 Score=27.03 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=23.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCC
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~ 220 (428)
+..|+.++|+.|+.....+++- .+.|-.+|...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccC
Confidence 4678899999999988777652 34555555443
No 482
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=46.93 E-value=14 Score=19.63 Aligned_cols=11 Identities=0% Similarity=0.147 Sum_probs=5.6
Q ss_pred chhHHHHHHHH
Q 014216 2 RRSQLLVILTI 12 (428)
Q Consensus 2 ~~~~ll~~~~~ 12 (428)
||..+++++++
T Consensus 8 Kkil~~l~a~~ 18 (25)
T PF08139_consen 8 KKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHH
Confidence 66554444444
No 483
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=46.38 E-value=34 Score=25.94 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=36.8
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCc--cccEEEE-EeCCC
Q 014216 54 EFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR--GFPTIKV-FVPGK 113 (428)
Q Consensus 54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~P~~~~-~~~g~ 113 (428)
.||-.+|+.|......+.+.. -.+.+.|+.+.-.....+.+.+++. ..-+.+. ..+|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 378899999999998877762 2345777655444455556677765 3333333 35554
No 484
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.37 E-value=22 Score=24.08 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=31.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCc----ccHhHHHHcCCccccEEE
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----EHQSLAQEYGIRGFPTIK 107 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~P~~~ 107 (428)
.+|+.+.|+.|++..-.+....- ......++.. ....+.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLE 56 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEE
Confidence 46788999999988766554322 2334445532 234455555566899975
No 485
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.98 E-value=58 Score=27.79 Aligned_cols=72 Identities=25% Similarity=0.321 Sum_probs=50.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHH
Q 014216 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132 (428)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 132 (428)
=.|.-..|..|..+...++.- -+-+++.+ +++...+.++-+-+|-++|.+ |.+|+ ..|.++.+++.+...+.
T Consensus 14 kI~~HktC~ssy~Lf~~L~nk--gll~~Vki--i~a~~p~f~~~~~~V~SvP~V--f~DGe--l~~~dpVdp~~ies~~~ 85 (265)
T COG5494 14 KIFTHKTCVSSYMLFEYLENK--GLLGKVKI--IDAELPPFLAFEKGVISVPSV--FIDGE--LVYADPVDPEEIESILS 85 (265)
T ss_pred EEEEecchHHHHHHHHHHHhc--CCCCCceE--EEcCCChHHHhhcceeecceE--EEcCe--EEEcCCCCHHHHHHHHc
Confidence 345567899998887766431 12234555 577777888888899999995 45886 45778888888877665
No 486
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=43.59 E-value=81 Score=27.59 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=43.8
Q ss_pred CCCCcEEeCccchHHHhhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC----ceEEEEEcCc
Q 014216 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG----VATVAALDAN 89 (428)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----~v~~~~vd~~ 89 (428)
+..+...+.+.+... -..+.+++|-+-..+|..|..-...++.+..++.. .|.|+.||-.
T Consensus 8 ~~~p~W~i~~~~pm~--~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 8 KPPPPWKIGGQDPML--NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCCCCceECCchHhh--hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 445566666655442 22477888888888999999988989888877763 5888888854
No 487
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=43.19 E-value=93 Score=27.66 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=42.7
Q ss_pred CcEEeCccchHHHHhhcCCeEEEEEECCCChhHhhH-HHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCCcCcEEEEE
Q 014216 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL-APEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (428)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~-~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~~~P~i~~~ 239 (428)
....++..+ +....++.+++....|||.|... ++.+.++++ |. .+...... .+. .-.-..+|++.+.
T Consensus 45 ~~~kvsn~d----~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsr-fG-n~~l~~~~--S~~----~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 45 NFFKVSNQD----LAPNGKPEVIFIGWEGCPYCAAESWALYIALSR-FG-NFSLEYHY--SDP----YDNYPNTPTLIFN 112 (249)
T ss_pred ceeeecCcc----cCCCCeeEEEEEecccCccchhhHHHHHHHHHh-cC-CeeeEEee--cCc----ccCCCCCCeEEEe
Confidence 344444433 34668899999999999999766 444454443 43 33222221 111 0112357999998
Q ss_pred cCCCCCcccc
Q 014216 240 GADKDSPIPY 249 (428)
Q Consensus 240 ~~~~~~~~~y 249 (428)
.-.....+.|
T Consensus 113 ~~~~~s~v~f 122 (249)
T PF06053_consen 113 NYTPNSSVSF 122 (249)
T ss_pred cCcCCCceEE
Confidence 5433333344
No 488
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=42.63 E-value=26 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.9
Q ss_pred EEEECCCChhHhhHHHHHHH
Q 014216 183 VEFFAPWCGHCKKLAPEWKK 202 (428)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~ 202 (428)
..|+.++|+.|+.....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 57889999999998887775
No 489
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=42.21 E-value=2.6e+02 Score=25.12 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=40.7
Q ss_pred CCCcEEeCccchHHHHhhcCCeE-EEEEECC-----CChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhh----c
Q 014216 159 SNESIELNSSNFDELVLKSKDLW-IVEFFAP-----WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK----F 228 (428)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~-~v~f~~~-----~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~----~ 228 (428)
......|++.+..- +..-+.++ +..|+++ .-+.-..+...+++.+..-.+++.+-.+|.+.+++..++ +
T Consensus 6 ~~k~ysLS~~T~~~-L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~ 84 (271)
T PF09822_consen 6 ANKRYSLSDQTKKV-LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEY 84 (271)
T ss_pred CCCCccCCHHHHHH-HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhc
Confidence 34455565544442 23334444 4455554 233334445555555555555899999998666555554 8
Q ss_pred CCCc
Q 014216 229 NVQG 232 (428)
Q Consensus 229 ~v~~ 232 (428)
|+..
T Consensus 85 Gi~~ 88 (271)
T PF09822_consen 85 GIQP 88 (271)
T ss_pred CCCc
Confidence 8775
No 490
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=41.89 E-value=1.4e+02 Score=25.60 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=43.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCccc------------------HhHHHHcCCc--cccEEEEEeC
Q 014216 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH------------------QSLAQEYGIR--GFPTIKVFVP 111 (428)
Q Consensus 52 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------~~l~~~~~v~--~~P~~~~~~~ 111 (428)
+=+|++.+|..|=.+...|.+++.. . .|......+|.. +..++.++.+ .+|.+++ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 3478899999999999999999998 3 455444444321 2334445544 5788654 7
Q ss_pred CCCCccccCCCCcchHHHHHHHHH
Q 014216 112 GKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 112 g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
|.. .. +..+...+..-|.+..
T Consensus 78 G~~--~~-~g~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 78 GRE--HR-VGSDRAAVEAAIQAAR 98 (202)
T ss_dssp TTE--EE-ETT-HHHHHHHHHHHH
T ss_pred Cee--ee-eccCHHHHHHHHHHhh
Confidence 753 22 2344555666665554
No 491
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.40 E-value=61 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=34.5
Q ss_pred hhHhhhcCCCcCcEEEEEcCCCCCcccccCCCCHHHHHHHHHHHHhhcC
Q 014216 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270 (428)
Q Consensus 222 ~~~~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~ 270 (428)
...++++||+++|++++ . ..+.-+|....+-+..-+.+.+....
T Consensus 174 ~~~A~e~gI~gVP~fv~---d--~~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF---D--GKYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccCceEEE---c--CcEeecCCCCHHHHHHHHHHHHhccc
Confidence 45788999999999999 2 24555788889999888888876554
No 492
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=40.64 E-value=1.6e+02 Score=25.33 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=42.6
Q ss_pred CChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcC-CccccEEEEEeCCCCCccccCCCCcchHHHHHHHHH
Q 014216 59 WCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG-IRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135 (428)
Q Consensus 59 ~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~~l 135 (428)
.|+.|+++.-.+. .+ .-.+.+-.||..+.++..+..- -...|.+ .|. ++ +..+...|.++|++.+
T Consensus 20 dcpf~qr~~m~L~---~k-~~~f~vttVd~~~kp~~f~~~sp~~~~P~l-~~d-~~------~~tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LK-GVPFKVTTVDLSRKPEWFLDISPGGKPPVL-KFD-EK------WVTDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---Hc-CCCceEEEeecCCCcHHHHhhCCCCCCCeE-EeC-Cc------eeccHHHHHHHHHHhc
Confidence 6999998887776 11 1257788899998887765544 4455554 333 32 2356677888888776
No 493
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.49 E-value=27 Score=29.67 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=26.8
Q ss_pred cHhHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHH
Q 014216 91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (428)
Q Consensus 91 ~~~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 131 (428)
+...+.+.||.++|++++ +|+ ....|..+.+.+.+.|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 346677889999999776 554 3457888888776544
No 494
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=40.10 E-value=74 Score=24.80 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=31.9
Q ss_pred ceEEEEEcCcccH----------hHHHHcCCccccEEEEEeCCCCCccccCCCCcchHHHHHHH
Q 014216 80 VATVAALDANEHQ----------SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ 133 (428)
Q Consensus 80 ~v~~~~vd~~~~~----------~l~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 133 (428)
.+.+.+.|..+++ ++-++.|....|.+++ +|+ +.....+.+.++|.+|+.-
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGe-iv~~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGE-IVKTGRYPTNEELAEWLGI 100 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTE-EEEESS---HHHHHHHHT-
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCE-EEEecCCCCHHHHHHHhCC
Confidence 4888899988665 4455668999998665 776 4555667788899999863
No 495
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=39.80 E-value=13 Score=22.64 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=7.0
Q ss_pred CchhHHHHHHHHH
Q 014216 1 MRRSQLLVILTIF 13 (428)
Q Consensus 1 M~~~~ll~~~~~~ 13 (428)
|||..+++++++.
T Consensus 1 MkKi~~~~i~~~~ 13 (46)
T PF02402_consen 1 MKKIIFIGIFLLT 13 (46)
T ss_pred CcEEEEeHHHHHH
Confidence 7876554444443
No 496
>COG5510 Predicted small secreted protein [Function unknown]
Probab=39.73 E-value=33 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=8.7
Q ss_pred CchhHHHHHHHHHHH
Q 014216 1 MRRSQLLVILTIFSF 15 (428)
Q Consensus 1 M~~~~ll~~~~~~~~ 15 (428)
||+.+++++++++++
T Consensus 2 mk~t~l~i~~vll~s 16 (44)
T COG5510 2 MKKTILLIALVLLAS 16 (44)
T ss_pred chHHHHHHHHHHHHH
Confidence 777666555554443
No 497
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.34 E-value=46 Score=24.20 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHH-HHHHhhcCcceEEEecCC------CchhHHHHhCCCCCCCceEEEEeccCCccccCCCCCCHHHHHHHHHHH
Q 014216 313 YLEMLLS-VAEKFKRGHYSFVWAAAG------KQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEA 385 (428)
Q Consensus 313 ~~~~~~~-~a~~~~~~~~~f~~id~~------~~~~~~~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~~~~i~~fi~~~ 385 (428)
..+.++. +.++|++++|.+.+||.. +..+++.++--...-+|.+++-+ ++ .-+|..-..+|-+++.+-
T Consensus 28 t~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved----ei-VaeGnprlKdiy~~m~d~ 102 (106)
T COG4837 28 TYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED----EI-VAEGNPRLKDIYRVMDDK 102 (106)
T ss_pred HHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc----eE-eecCCchHHHHHHHHHHh
Confidence 3344444 556899999999999863 22345666555566688886543 11 122333445666666553
No 498
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=35.92 E-value=1.6e+02 Score=23.38 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCceEEEEEcCcccHhHHHHcCCccc-c-EEEEEeCCC
Q 014216 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF-P-TIKVFVPGK 113 (428)
Q Consensus 47 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~-P-~~~~~~~g~ 113 (428)
.+++-+|.+|...|+.|.....-+.+. ...+.+.|+.+.......+....++..- + ++.+..+|+
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~--D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~ 71 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR--DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQ 71 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh--ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCc
Confidence 477888999999999999955444332 2356799999999888888888887643 3 344445554
No 499
>PRK09810 entericidin A; Provisional
Probab=35.62 E-value=38 Score=20.56 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=5.4
Q ss_pred CchhHHHHHH
Q 014216 1 MRRSQLLVIL 10 (428)
Q Consensus 1 M~~~~ll~~~ 10 (428)
||+...++++
T Consensus 2 Mkk~~~l~~~ 11 (41)
T PRK09810 2 MKRLIVLVLL 11 (41)
T ss_pred hHHHHHHHHH
Confidence 6665554433
No 500
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=35.33 E-value=1.2e+02 Score=24.20 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=0.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhcCCeEEEEEeCCCchhHhhhcCCC
Q 014216 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231 (428)
Q Consensus 182 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~~~~~v~ 231 (428)
++.|++|.|+=|......+++ ..+.+..+..+.-..+.+++||.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp 71 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIP 71 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCC
Done!