Query 014217
Match_columns 428
No_of_seqs 165 out of 2120
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 2.6E-52 5.5E-57 369.9 27.2 423 5-428 25-510 (510)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.6E-50 1.6E-54 379.3 37.9 349 13-425 2-352 (352)
3 KOG0145 RNA-binding protein EL 100.0 1.8E-45 3.8E-50 305.7 26.5 321 11-424 38-360 (360)
4 TIGR01628 PABP-1234 polyadenyl 100.0 6.5E-43 1.4E-47 350.4 28.8 257 15-425 1-264 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.7E-42 5.8E-47 346.0 31.1 272 11-424 85-366 (562)
6 KOG0117 Heterogeneous nuclear 100.0 8.6E-43 1.9E-47 310.9 23.9 256 7-426 76-335 (506)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 7.7E-42 1.7E-46 330.3 29.1 250 10-424 54-309 (578)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.3E-40 1.2E-44 320.9 36.6 335 13-422 1-351 (481)
9 TIGR01645 half-pint poly-U bin 100.0 8.2E-39 1.8E-43 309.4 35.2 166 12-183 105-283 (612)
10 TIGR01622 SF-CC1 splicing fact 100.0 1.6E-38 3.4E-43 311.9 33.3 167 10-183 85-265 (457)
11 KOG0127 Nucleolar protein fibr 100.0 1.3E-38 2.8E-43 290.5 27.8 329 14-423 5-379 (678)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-36 3.5E-41 296.5 32.2 281 13-422 95-480 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8E-36 1.7E-40 296.9 30.3 275 9-420 170-500 (509)
14 KOG0148 Apoptosis-promoting RN 100.0 4.2E-36 9.2E-41 251.5 18.6 232 11-425 3-241 (321)
15 KOG0146 RNA-binding protein ET 100.0 8.3E-34 1.8E-38 237.1 19.0 332 86-428 2-371 (371)
16 KOG0123 Polyadenylate-binding 100.0 2.7E-33 5.8E-38 259.7 21.9 245 15-422 2-246 (369)
17 KOG0123 Polyadenylate-binding 100.0 4.6E-32 1E-36 251.5 22.1 265 16-425 78-352 (369)
18 TIGR01659 sex-lethal sex-letha 100.0 5.9E-32 1.3E-36 249.7 21.7 173 8-184 101-275 (346)
19 TIGR01659 sex-lethal sex-letha 100.0 9.1E-32 2E-36 248.4 20.3 170 101-425 106-278 (346)
20 KOG0124 Polypyrimidine tract-b 100.0 1.7E-30 3.7E-35 226.4 20.9 164 14-183 113-289 (544)
21 TIGR01645 half-pint poly-U bin 100.0 1.9E-29 4.2E-34 244.5 21.0 179 102-424 107-286 (612)
22 KOG0147 Transcriptional coacti 100.0 2.1E-29 4.5E-34 231.9 15.2 165 6-175 171-351 (549)
23 KOG0144 RNA-binding protein CU 100.0 1.7E-29 3.8E-34 224.9 12.5 172 102-425 34-209 (510)
24 KOG0110 RNA-binding protein (R 100.0 2.4E-28 5.3E-33 230.9 17.9 258 10-422 381-693 (725)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.7E-28 7.9E-33 230.7 19.4 167 102-423 3-172 (352)
26 KOG0148 Apoptosis-promoting RN 100.0 1.2E-27 2.6E-32 200.8 20.1 160 14-184 62-238 (321)
27 KOG4212 RNA-binding protein hn 100.0 5.4E-26 1.2E-30 202.8 30.6 153 13-169 43-282 (608)
28 TIGR01622 SF-CC1 splicing fact 100.0 9.8E-27 2.1E-31 228.5 22.8 177 101-421 88-265 (457)
29 KOG0127 Nucleolar protein fibr 99.9 4.1E-27 8.9E-32 215.6 13.9 171 14-190 117-384 (678)
30 KOG0145 RNA-binding protein EL 99.9 6.3E-27 1.4E-31 195.3 12.9 171 100-425 39-212 (360)
31 KOG1190 Polypyrimidine tract-b 99.9 2.8E-25 6E-30 196.9 21.9 308 12-424 26-375 (492)
32 KOG4211 Splicing factor hnRNP- 99.9 3E-24 6.5E-29 195.4 28.6 163 9-182 5-180 (510)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 2.6E-25 5.6E-30 215.7 20.8 199 65-424 18-224 (578)
34 KOG0117 Heterogeneous nuclear 99.9 1E-23 2.2E-28 189.3 27.2 169 12-191 162-338 (506)
35 KOG1456 Heterogeneous nuclear 99.9 8.8E-24 1.9E-28 185.2 26.1 330 7-422 24-363 (494)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.7E-24 1.9E-28 210.6 23.3 83 341-423 294-376 (509)
37 KOG0131 Splicing factor 3b, su 99.9 4.1E-25 8.8E-30 175.2 10.6 172 100-425 7-180 (203)
38 KOG0131 Splicing factor 3b, su 99.9 2E-23 4.4E-28 165.6 10.6 169 10-184 5-177 (203)
39 KOG0110 RNA-binding protein (R 99.9 1.7E-22 3.6E-27 191.6 18.2 206 103-422 386-598 (725)
40 KOG0146 RNA-binding protein ET 99.9 8.5E-23 1.8E-27 171.3 11.2 174 6-183 11-364 (371)
41 KOG0109 RNA-binding protein LA 99.9 3.8E-22 8.2E-27 169.6 9.8 152 104-427 4-155 (346)
42 KOG1190 Polypyrimidine tract-b 99.9 1.8E-20 3.9E-25 166.5 19.2 278 12-422 148-491 (492)
43 KOG0109 RNA-binding protein LA 99.9 1.6E-21 3.4E-26 165.9 9.5 147 15-183 3-149 (346)
44 KOG0124 Polypyrimidine tract-b 99.8 1.5E-20 3.2E-25 164.6 12.5 174 102-421 113-289 (544)
45 KOG1365 RNA-binding protein Fu 99.8 8E-19 1.7E-23 154.8 19.3 278 10-417 56-357 (508)
46 KOG4205 RNA-binding protein mu 99.8 7E-20 1.5E-24 164.1 10.7 168 13-188 5-180 (311)
47 PLN03134 glycine-rich RNA-bind 99.8 7.5E-19 1.6E-23 142.2 14.2 86 340-425 32-117 (144)
48 KOG0147 Transcriptional coacti 99.8 2.9E-19 6.3E-24 165.3 8.9 178 102-421 179-357 (549)
49 KOG0120 Splicing factor U2AF, 99.8 8.7E-19 1.9E-23 164.5 11.3 268 10-418 171-488 (500)
50 KOG1548 Transcription elongati 99.8 1.8E-17 3.9E-22 144.8 17.0 190 102-422 134-352 (382)
51 KOG1456 Heterogeneous nuclear 99.8 1.1E-15 2.3E-20 134.8 26.3 276 17-422 125-491 (494)
52 KOG4205 RNA-binding protein mu 99.7 3.7E-18 8E-23 153.0 9.6 174 101-425 5-179 (311)
53 KOG1457 RNA binding protein (c 99.7 5.1E-17 1.1E-21 133.3 15.1 238 102-409 34-273 (284)
54 KOG4206 Spliceosomal protein s 99.7 1.7E-16 3.7E-21 131.8 17.1 206 103-420 10-220 (221)
55 KOG4307 RNA binding protein RB 99.7 2.8E-15 6E-20 142.0 26.7 148 12-164 309-497 (944)
56 KOG0122 Translation initiation 99.7 7.3E-17 1.6E-21 134.5 13.7 84 339-422 186-269 (270)
57 KOG0105 Alternative splicing f 99.7 6.9E-16 1.5E-20 123.0 15.8 172 101-410 5-176 (241)
58 KOG0105 Alternative splicing f 99.7 4.4E-16 9.4E-21 124.1 14.2 145 11-167 3-174 (241)
59 PF00076 RRM_1: RNA recognitio 99.7 2.4E-16 5.3E-21 112.2 10.7 70 345-415 1-70 (70)
60 KOG4212 RNA-binding protein hn 99.7 8.5E-15 1.8E-19 131.7 21.2 248 102-424 44-296 (608)
61 PLN03134 glycine-rich RNA-bind 99.7 2.6E-16 5.5E-21 127.5 10.2 84 11-97 31-114 (144)
62 KOG1365 RNA-binding protein Fu 99.7 3E-15 6.5E-20 132.4 17.2 165 12-182 159-360 (508)
63 KOG4206 Spliceosomal protein s 99.7 2.8E-15 6.1E-20 124.6 15.8 157 14-182 9-220 (221)
64 KOG0125 Ataxin 2-binding prote 99.7 9.3E-16 2E-20 133.2 11.3 83 340-424 94-176 (376)
65 PF14259 RRM_6: RNA recognitio 99.7 1.5E-15 3.3E-20 108.0 10.5 70 345-415 1-70 (70)
66 KOG0121 Nuclear cap-binding pr 99.6 6.7E-16 1.4E-20 115.5 7.1 81 341-421 35-115 (153)
67 KOG4207 Predicted splicing fac 99.6 6.3E-16 1.4E-20 125.5 6.6 85 339-423 10-94 (256)
68 KOG1457 RNA binding protein (c 99.6 1E-14 2.2E-19 119.9 12.4 157 9-168 29-273 (284)
69 KOG0107 Alternative splicing f 99.6 2.9E-15 6.3E-20 118.7 8.5 79 341-424 9-87 (195)
70 KOG4211 Splicing factor hnRNP- 99.6 1.6E-14 3.4E-19 132.5 13.8 77 341-419 102-179 (510)
71 PLN03120 nucleic acid binding 99.6 1.2E-14 2.6E-19 125.7 11.1 77 342-422 4-80 (260)
72 KOG0122 Translation initiation 99.6 7.7E-15 1.7E-19 122.6 8.8 85 10-97 185-269 (270)
73 KOG0113 U1 small nuclear ribon 99.6 2.5E-14 5.4E-19 122.9 11.2 86 338-423 97-182 (335)
74 KOG0149 Predicted RNA-binding 99.6 9E-15 1.9E-19 121.8 7.8 80 341-421 11-90 (247)
75 KOG0114 Predicted RNA-binding 99.6 2.6E-14 5.7E-19 102.8 8.7 80 341-423 17-96 (124)
76 PF00076 RRM_1: RNA recognitio 99.6 1.5E-14 3.3E-19 102.8 7.7 64 17-81 1-64 (70)
77 KOG0106 Alternative splicing f 99.6 1.1E-14 2.3E-19 122.6 7.7 165 103-417 2-166 (216)
78 KOG0126 Predicted RNA-binding 99.5 1.6E-15 3.5E-20 120.6 1.2 84 339-422 32-115 (219)
79 PLN03213 repressor of silencin 99.5 3.3E-14 7.2E-19 129.9 9.8 79 340-422 8-88 (759)
80 smart00362 RRM_2 RNA recogniti 99.5 9.5E-14 2.1E-18 99.1 9.4 72 344-417 1-72 (72)
81 KOG0121 Nuclear cap-binding pr 99.5 2.4E-14 5.1E-19 107.3 6.2 86 8-96 30-115 (153)
82 KOG0149 Predicted RNA-binding 99.5 3.4E-14 7.4E-19 118.4 7.8 79 11-91 9-87 (247)
83 KOG1548 Transcription elongati 99.5 7.2E-13 1.6E-17 116.3 15.9 159 12-178 132-348 (382)
84 KOG0111 Cyclophilin-type pepti 99.5 1.2E-14 2.5E-19 119.2 4.1 84 341-424 9-92 (298)
85 PF14259 RRM_6: RNA recognitio 99.5 8.1E-14 1.8E-18 99.0 7.6 63 17-80 1-63 (70)
86 smart00360 RRM RNA recognition 99.5 1.4E-13 3E-18 97.8 8.5 71 347-417 1-71 (71)
87 KOG0106 Alternative splicing f 99.5 4.9E-14 1.1E-18 118.7 6.4 141 15-174 2-163 (216)
88 KOG0130 RNA-binding protein RB 99.5 8.2E-14 1.8E-18 105.3 6.8 84 341-424 71-154 (170)
89 KOG0108 mRNA cleavage and poly 99.5 1E-13 2.2E-18 130.1 9.1 82 343-424 19-100 (435)
90 PLN03121 nucleic acid binding 99.5 2.9E-13 6.4E-18 115.0 10.8 76 341-420 4-79 (243)
91 cd00590 RRM RRM (RNA recogniti 99.5 8E-13 1.7E-17 94.7 10.3 74 344-418 1-74 (74)
92 PF13893 RRM_5: RNA recognitio 99.4 4.6E-13 1E-17 90.3 8.0 56 359-419 1-56 (56)
93 smart00361 RRM_1 RNA recogniti 99.4 4.6E-13 1E-17 94.6 8.3 62 356-417 2-70 (70)
94 PLN03120 nucleic acid binding 99.4 8.4E-13 1.8E-17 114.3 10.1 77 14-97 4-80 (260)
95 KOG0107 Alternative splicing f 99.4 7.5E-13 1.6E-17 105.1 7.5 77 12-96 8-84 (195)
96 KOG0114 Predicted RNA-binding 99.4 2.9E-12 6.3E-17 92.4 8.7 83 8-96 12-94 (124)
97 COG0724 RNA-binding proteins ( 99.4 2.1E-12 4.6E-17 118.9 10.3 79 342-420 115-193 (306)
98 COG0724 RNA-binding proteins ( 99.4 7.9E-12 1.7E-16 115.1 13.6 122 14-138 115-261 (306)
99 KOG4660 Protein Mei2, essentia 99.4 3.3E-11 7.1E-16 112.8 17.1 158 8-183 69-249 (549)
100 PLN03213 repressor of silencin 99.4 3E-12 6.4E-17 117.3 9.4 82 7-95 3-86 (759)
101 KOG0129 Predicted RNA-binding 99.4 1.6E-11 3.4E-16 113.9 14.0 157 5-162 250-432 (520)
102 PLN03121 nucleic acid binding 99.3 4.4E-12 9.6E-17 107.9 9.5 76 12-94 3-78 (243)
103 KOG0125 Ataxin 2-binding prote 99.3 3.1E-12 6.7E-17 111.5 8.1 85 8-97 90-174 (376)
104 KOG0126 Predicted RNA-binding 99.3 1.2E-13 2.6E-18 110.1 -1.2 80 10-92 31-110 (219)
105 KOG0120 Splicing factor U2AF, 99.3 8.1E-12 1.8E-16 118.0 10.6 166 10-181 285-489 (500)
106 KOG0113 U1 small nuclear ribon 99.3 6.2E-12 1.3E-16 108.3 8.4 80 12-94 99-178 (335)
107 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.9E-16 87.7 8.6 64 16-81 1-64 (72)
108 KOG4207 Predicted splicing fac 99.3 4.5E-12 9.8E-17 103.3 6.3 83 10-95 9-91 (256)
109 KOG0130 RNA-binding protein RB 99.3 6.8E-12 1.5E-16 95.0 6.7 81 12-95 70-150 (170)
110 KOG0415 Predicted peptidyl pro 99.3 7.1E-12 1.5E-16 110.2 7.0 85 338-422 235-319 (479)
111 smart00360 RRM RNA recognition 99.3 2.4E-11 5.2E-16 86.1 8.3 63 19-81 1-63 (71)
112 KOG0128 RNA-binding protein SA 99.2 6.6E-13 1.4E-17 129.5 -1.3 231 12-420 569-813 (881)
113 KOG0108 mRNA cleavage and poly 99.2 1.8E-11 4E-16 115.1 8.0 82 15-99 19-100 (435)
114 cd00590 RRM RRM (RNA recogniti 99.2 1.3E-10 2.7E-15 83.1 9.5 64 16-80 1-64 (74)
115 KOG4208 Nucleolar RNA-binding 99.2 1E-10 2.3E-15 95.9 8.0 82 339-420 46-128 (214)
116 KOG0153 Predicted RNA-binding 99.1 1.5E-10 3.3E-15 102.0 8.9 80 338-423 224-304 (377)
117 KOG0111 Cyclophilin-type pepti 99.1 3.3E-11 7.3E-16 99.1 3.3 88 10-100 6-93 (298)
118 KOG0129 Predicted RNA-binding 99.1 1.2E-09 2.6E-14 101.6 11.6 64 340-403 368-432 (520)
119 KOG4454 RNA binding protein (R 99.1 5E-11 1.1E-15 98.2 2.1 139 11-166 6-148 (267)
120 KOG0128 RNA-binding protein SA 99.0 1E-11 2.2E-16 121.3 -3.3 138 11-167 664-801 (881)
121 smart00361 RRM_1 RNA recogniti 99.0 9.5E-10 2.1E-14 77.6 7.2 54 28-81 2-62 (70)
122 KOG0132 RNA polymerase II C-te 99.0 8.5E-10 1.9E-14 106.9 7.9 77 342-424 421-497 (894)
123 KOG0533 RRM motif-containing p 99.0 1.3E-09 2.9E-14 94.2 8.3 81 341-422 82-162 (243)
124 KOG0132 RNA polymerase II C-te 99.0 8.2E-08 1.8E-12 93.5 20.9 74 13-95 420-493 (894)
125 PF13893 RRM_5: RNA recognitio 99.0 1.9E-09 4.1E-14 72.5 7.0 56 119-181 1-56 (56)
126 PF04059 RRM_2: RNA recognitio 98.9 1.2E-08 2.5E-13 75.4 10.1 79 343-421 2-86 (97)
127 KOG4661 Hsp27-ERE-TATA-binding 98.9 8.3E-09 1.8E-13 96.6 10.9 86 340-425 403-488 (940)
128 KOG4208 Nucleolar RNA-binding 98.9 1E-08 2.2E-13 84.4 8.0 74 8-81 43-117 (214)
129 KOG0112 Large RNA-binding prot 98.9 2.5E-09 5.4E-14 105.4 5.2 166 9-185 367-532 (975)
130 KOG4209 Splicing factor RNPS1, 98.8 7.4E-09 1.6E-13 90.1 6.7 85 340-425 99-183 (231)
131 KOG4210 Nuclear localization s 98.8 3.6E-09 7.9E-14 95.3 4.3 82 342-424 184-266 (285)
132 KOG4454 RNA binding protein (R 98.8 1.1E-09 2.4E-14 90.4 0.8 68 100-168 7-74 (267)
133 KOG0112 Large RNA-binding prot 98.8 3.7E-09 8E-14 104.2 4.3 158 102-422 372-531 (975)
134 KOG0226 RNA-binding proteins [ 98.8 3.4E-09 7.3E-14 89.6 3.5 81 339-419 187-267 (290)
135 KOG0153 Predicted RNA-binding 98.8 1.8E-08 4E-13 89.1 7.3 83 6-96 220-302 (377)
136 KOG0151 Predicted splicing reg 98.8 3.3E-08 7.2E-13 95.1 9.1 83 339-421 171-256 (877)
137 KOG4307 RNA binding protein RB 98.7 1.9E-06 4.1E-11 83.1 20.4 77 339-417 308-384 (944)
138 KOG0116 RasGAP SH3 binding pro 98.7 6.7E-08 1.5E-12 90.7 9.9 83 341-424 287-369 (419)
139 KOG0415 Predicted peptidyl pro 98.7 2.1E-08 4.5E-13 88.8 5.8 90 94-186 231-321 (479)
140 PF04059 RRM_2: RNA recognitio 98.7 2.1E-07 4.5E-12 68.9 9.7 80 15-94 2-84 (97)
141 KOG4661 Hsp27-ERE-TATA-binding 98.6 9.1E-08 2E-12 89.8 7.8 85 7-94 398-482 (940)
142 KOG4210 Nuclear localization s 98.6 6.9E-08 1.5E-12 87.1 6.5 168 12-184 86-264 (285)
143 KOG0226 RNA-binding proteins [ 98.5 9.9E-08 2.1E-12 80.9 5.0 155 14-173 96-261 (290)
144 KOG2193 IGF-II mRNA-binding pr 98.5 1.4E-08 3E-13 91.9 -0.6 156 15-185 2-158 (584)
145 KOG4660 Protein Mei2, essentia 98.5 1E-07 2.2E-12 89.9 4.9 71 340-415 73-143 (549)
146 KOG0533 RRM motif-containing p 98.5 4.9E-07 1.1E-11 78.5 8.2 81 10-94 79-159 (243)
147 KOG0116 RasGAP SH3 binding pro 98.5 3E-07 6.4E-12 86.5 7.0 66 11-76 285-350 (419)
148 PF11608 Limkain-b1: Limkain b 98.5 7.8E-07 1.7E-11 62.3 7.2 68 343-420 3-75 (90)
149 KOG1995 Conserved Zn-finger pr 98.4 3.2E-07 6.9E-12 82.1 5.5 85 339-423 63-155 (351)
150 KOG4676 Splicing factor, argin 98.4 2.2E-07 4.7E-12 83.5 3.8 65 341-410 150-214 (479)
151 PF08777 RRM_3: RNA binding mo 98.3 9.1E-07 2E-11 67.2 5.4 70 342-417 1-75 (105)
152 KOG4209 Splicing factor RNPS1, 98.3 1.2E-06 2.5E-11 76.5 5.2 83 8-94 95-177 (231)
153 KOG4849 mRNA cleavage factor I 98.3 0.00021 4.7E-09 63.7 19.1 80 102-183 80-162 (498)
154 KOG4676 Splicing factor, argin 98.1 1E-06 2.2E-11 79.3 2.2 142 15-162 8-208 (479)
155 KOG2193 IGF-II mRNA-binding pr 98.1 4.9E-07 1.1E-11 82.0 -0.7 152 103-419 2-154 (584)
156 KOG0151 Predicted splicing reg 98.0 8.7E-06 1.9E-10 78.9 5.9 82 11-95 171-255 (877)
157 PF11608 Limkain-b1: Limkain b 98.0 7.6E-05 1.6E-09 52.5 8.5 67 15-94 3-74 (90)
158 PF08777 RRM_3: RNA binding mo 97.9 2.8E-05 6.1E-10 59.1 6.1 59 15-79 2-60 (105)
159 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.4E-10 68.7 6.5 80 343-422 115-203 (480)
160 PF05172 Nup35_RRM: Nup53/35/4 97.9 6.3E-05 1.4E-09 56.1 7.1 78 341-420 5-90 (100)
161 KOG2202 U2 snRNP splicing fact 97.8 1E-05 2.2E-10 69.3 1.5 64 357-421 83-147 (260)
162 KOG3152 TBP-binding protein, a 97.8 1.6E-05 3.5E-10 67.9 2.6 73 341-413 73-157 (278)
163 PF14605 Nup35_RRM_2: Nup53/35 97.7 7.2E-05 1.6E-09 49.0 5.0 52 343-401 2-53 (53)
164 KOG1996 mRNA splicing factor [ 97.7 8.7E-05 1.9E-09 64.6 6.9 80 341-420 280-365 (378)
165 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.8E-09 47.7 5.4 52 15-73 2-53 (53)
166 KOG4849 mRNA cleavage factor I 97.6 9.4E-05 2E-09 65.9 4.6 73 9-81 75-149 (498)
167 PF08952 DUF1866: Domain of un 97.5 0.00073 1.6E-08 53.6 8.1 74 338-420 23-105 (146)
168 KOG0115 RNA-binding protein p5 97.4 0.00045 9.7E-09 59.3 7.1 66 343-409 32-97 (275)
169 KOG1995 Conserved Zn-finger pr 97.4 0.00021 4.6E-09 64.4 5.4 82 10-94 62-151 (351)
170 KOG2314 Translation initiation 97.4 0.00032 7E-09 66.6 6.3 75 342-417 58-139 (698)
171 KOG0115 RNA-binding protein p5 97.4 0.0059 1.3E-07 52.7 13.0 90 69-167 7-96 (275)
172 PF08675 RNA_bind: RNA binding 97.3 0.0012 2.5E-08 46.6 6.7 59 11-78 6-64 (87)
173 PF10309 DUF2414: Protein of u 97.3 0.0017 3.7E-08 43.5 7.0 54 14-76 5-62 (62)
174 KOG1855 Predicted RNA-binding 97.3 0.00017 3.6E-09 66.3 2.9 67 341-407 230-309 (484)
175 KOG2314 Translation initiation 97.2 0.00097 2.1E-08 63.5 6.7 73 101-173 57-135 (698)
176 KOG3152 TBP-binding protein, a 97.1 0.00042 9.1E-09 59.5 3.3 72 13-84 73-156 (278)
177 KOG4285 Mitotic phosphoprotein 97.0 0.065 1.4E-06 47.5 16.0 65 342-414 197-261 (350)
178 COG5175 MOT2 Transcriptional r 97.0 0.0021 4.6E-08 57.3 6.6 77 15-94 115-200 (480)
179 KOG2416 Acinus (induces apopto 96.9 0.00081 1.8E-08 64.4 4.0 81 335-421 437-521 (718)
180 KOG1855 Predicted RNA-binding 96.9 0.0011 2.5E-08 61.0 4.6 71 9-79 226-309 (484)
181 KOG2416 Acinus (induces apopto 96.8 0.0073 1.6E-07 58.2 9.1 84 99-187 441-525 (718)
182 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0041 8.9E-08 46.5 5.6 81 11-95 3-90 (100)
183 PF08675 RNA_bind: RNA binding 96.4 0.032 7E-07 39.5 7.7 56 102-165 9-64 (87)
184 PF07576 BRAP2: BRCA1-associat 96.3 0.043 9.4E-07 41.9 9.1 70 11-82 10-80 (110)
185 PF04847 Calcipressin: Calcipr 96.3 0.0098 2.1E-07 50.1 5.9 62 355-422 8-71 (184)
186 PF15023 DUF4523: Protein of u 96.2 0.029 6.2E-07 44.0 7.4 75 339-421 83-161 (166)
187 KOG4574 RNA-binding protein (c 96.1 0.021 4.6E-07 57.4 8.0 73 345-423 301-375 (1007)
188 PF10309 DUF2414: Protein of u 96.1 0.042 9E-07 36.9 6.7 55 342-404 5-62 (62)
189 KOG2068 MOT2 transcription fac 95.7 0.0034 7.4E-08 56.5 0.7 79 343-422 78-163 (327)
190 KOG2202 U2 snRNP splicing fact 95.7 0.0063 1.4E-07 52.6 2.1 65 117-184 83-148 (260)
191 KOG2591 c-Mpl binding protein, 95.6 0.021 4.5E-07 54.7 5.2 70 341-417 174-247 (684)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.05 1.1E-06 45.7 6.8 81 341-421 6-97 (176)
193 PF15023 DUF4523: Protein of u 95.3 0.13 2.8E-06 40.4 7.8 78 8-96 80-161 (166)
194 PF07576 BRAP2: BRCA1-associat 95.2 0.28 6E-06 37.5 9.5 67 343-411 14-81 (110)
195 PF11767 SET_assoc: Histone ly 95.2 0.11 2.5E-06 35.4 6.4 55 353-416 11-65 (66)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.018 4E-07 48.3 3.0 74 11-84 4-83 (176)
197 KOG1996 mRNA splicing factor [ 95.0 0.059 1.3E-06 47.5 5.7 56 117-173 301-358 (378)
198 KOG2135 Proteins containing th 94.9 0.015 3.3E-07 54.5 2.2 75 341-422 371-446 (526)
199 KOG2253 U1 snRNP complex, subu 94.7 0.053 1.1E-06 53.3 5.1 70 341-419 39-108 (668)
200 KOG0804 Cytoplasmic Zn-finger 94.2 0.2 4.3E-06 47.1 7.6 70 11-82 71-141 (493)
201 KOG0804 Cytoplasmic Zn-finger 93.2 0.37 8.1E-06 45.4 7.5 68 342-411 74-142 (493)
202 KOG2591 c-Mpl binding protein, 92.9 0.35 7.5E-06 46.7 7.0 61 10-77 171-233 (684)
203 PF08952 DUF1866: Domain of un 92.4 0.3 6.4E-06 39.0 5.0 73 100-183 25-106 (146)
204 KOG4574 RNA-binding protein (c 92.1 0.73 1.6E-05 47.0 8.4 73 106-184 302-374 (1007)
205 PF07292 NID: Nmi/IFP 35 domai 92.0 0.11 2.5E-06 37.7 2.1 66 59-124 1-74 (88)
206 KOG2891 Surface glycoprotein [ 91.7 0.051 1.1E-06 47.4 0.0 82 341-422 148-268 (445)
207 PF03880 DbpA: DbpA RNA bindin 91.6 0.77 1.7E-05 32.4 6.0 59 352-419 11-74 (74)
208 KOG4019 Calcineurin-mediated s 91.2 0.18 3.9E-06 41.4 2.6 77 341-423 9-91 (193)
209 KOG4285 Mitotic phosphoprotein 90.8 0.81 1.8E-05 40.8 6.4 62 14-84 197-258 (350)
210 PF11767 SET_assoc: Histone ly 89.8 1.3 2.8E-05 30.3 5.5 49 25-82 11-59 (66)
211 PF03468 XS: XS domain; Inter 88.9 1 2.2E-05 34.9 5.0 59 343-404 9-76 (116)
212 PF10567 Nab6_mRNP_bdg: RNA-re 87.0 23 0.00049 32.0 14.4 150 13-165 14-213 (309)
213 KOG2068 MOT2 transcription fac 84.7 0.75 1.6E-05 41.8 2.6 70 103-173 78-154 (327)
214 PF04847 Calcipressin: Calcipr 84.6 1.6 3.5E-05 36.9 4.4 60 114-181 7-68 (184)
215 PF07292 NID: Nmi/IFP 35 domai 80.4 1.5 3.3E-05 31.9 2.3 23 341-363 51-73 (88)
216 KOG2135 Proteins containing th 76.8 1.2 2.6E-05 42.4 1.1 76 13-98 371-447 (526)
217 PF15513 DUF4651: Domain of un 75.7 6.6 0.00014 26.3 4.1 17 29-45 9-25 (62)
218 PF10567 Nab6_mRNP_bdg: RNA-re 74.2 5 0.00011 36.0 4.2 60 99-158 12-79 (309)
219 KOG2318 Uncharacterized conser 73.6 13 0.00029 36.6 7.2 82 338-419 170-303 (650)
220 PF14111 DUF4283: Domain of un 73.1 3.3 7.1E-05 33.8 2.8 104 25-137 28-140 (153)
221 PF03880 DbpA: DbpA RNA bindin 70.3 21 0.00046 25.0 6.0 58 112-180 11-73 (74)
222 KOG4483 Uncharacterized conser 67.5 12 0.00026 35.0 5.3 56 13-75 390-446 (528)
223 KOG4213 RNA-binding protein La 65.4 5.7 0.00012 32.8 2.5 60 13-76 110-170 (205)
224 KOG2253 U1 snRNP complex, subu 65.1 7 0.00015 39.1 3.5 70 100-178 38-107 (668)
225 PF03468 XS: XS domain; Inter 64.6 9.3 0.0002 29.6 3.5 52 16-70 10-70 (116)
226 PF07530 PRE_C2HC: Associated 63.7 15 0.00032 25.3 4.0 64 357-423 2-66 (68)
227 KOG2295 C2H2 Zn-finger protein 63.4 0.95 2.1E-05 43.9 -2.6 75 340-414 229-303 (648)
228 KOG2318 Uncharacterized conser 63.3 31 0.00067 34.2 7.3 80 102-182 174-306 (650)
229 TIGR03636 L23_arch archaeal ri 58.5 50 0.0011 23.4 6.0 57 345-404 16-74 (77)
230 PRK14548 50S ribosomal protein 55.7 56 0.0012 23.6 5.9 57 345-404 23-81 (84)
231 PF07530 PRE_C2HC: Associated 54.5 17 0.00038 25.0 3.1 61 29-95 2-63 (68)
232 KOG4410 5-formyltetrahydrofola 53.6 38 0.00083 30.3 5.7 52 10-67 326-378 (396)
233 KOG4483 Uncharacterized conser 52.0 51 0.0011 31.1 6.5 58 340-403 389-446 (528)
234 KOG4008 rRNA processing protei 48.3 17 0.00037 31.5 2.7 37 7-43 33-69 (261)
235 KOG4410 5-formyltetrahydrofola 48.0 2E+02 0.0043 26.0 9.1 49 342-395 330-378 (396)
236 COG5193 LHP1 La protein, small 47.0 8.4 0.00018 36.1 0.8 64 11-74 171-244 (438)
237 smart00596 PRE_C2HC PRE_C2HC d 46.3 43 0.00094 23.1 3.9 63 357-422 2-65 (69)
238 PF15513 DUF4651: Domain of un 44.1 48 0.001 22.3 3.7 21 117-137 9-29 (62)
239 PRK11901 hypothetical protein; 43.9 2.7E+02 0.0059 25.9 10.1 61 340-405 243-305 (327)
240 PF14111 DUF4283: Domain of un 42.7 19 0.00042 29.1 2.2 34 342-375 104-138 (153)
241 KOG4213 RNA-binding protein La 39.8 40 0.00086 28.1 3.4 57 102-162 111-169 (205)
242 KOG2295 C2H2 Zn-finger protein 36.5 6.2 0.00013 38.6 -1.8 66 102-167 231-297 (648)
243 PF11823 DUF3343: Protein of u 35.6 53 0.0012 22.8 3.3 26 385-410 2-27 (73)
244 KOG1924 RhoA GTPase effector D 32.0 4.2E+02 0.009 28.0 9.7 12 115-126 363-374 (1102)
245 KOG1924 RhoA GTPase effector D 31.9 6.4E+02 0.014 26.7 14.6 20 341-360 640-659 (1102)
246 KOG1295 Nonsense-mediated deca 31.8 62 0.0014 30.5 3.8 74 11-84 4-80 (376)
247 KOG1295 Nonsense-mediated deca 30.3 63 0.0014 30.4 3.6 70 102-171 7-80 (376)
248 COG5353 Uncharacterized protei 29.9 3E+02 0.0065 22.3 6.7 59 12-70 85-156 (161)
249 cd04908 ACT_Bt0572_1 N-termina 28.3 1.8E+02 0.004 19.3 8.0 50 355-409 14-64 (66)
250 smart00596 PRE_C2HC PRE_C2HC d 28.2 1.5E+02 0.0034 20.4 4.3 43 29-71 2-45 (69)
251 PF00403 HMA: Heavy-metal-asso 27.8 1.8E+02 0.0039 19.0 5.9 54 344-403 1-58 (62)
252 PRK11901 hypothetical protein; 27.6 78 0.0017 29.3 3.7 58 103-165 246-306 (327)
253 PF11411 DNA_ligase_IV: DNA li 27.0 50 0.0011 19.5 1.5 16 24-39 19-34 (36)
254 KOG4365 Uncharacterized conser 26.8 12 0.00027 35.5 -1.5 79 343-422 4-82 (572)
255 PF04026 SpoVG: SpoVG; InterP 26.4 1.6E+02 0.0034 21.3 4.4 49 368-423 2-52 (84)
256 TIGR03636 L23_arch archaeal ri 26.1 2.4E+02 0.0053 20.0 6.4 57 16-75 15-73 (77)
257 COG0030 KsgA Dimethyladenosine 25.5 96 0.0021 27.9 3.8 34 14-47 95-128 (259)
258 PRK10629 EnvZ/OmpR regulon mod 24.8 3.5E+02 0.0076 21.3 7.3 70 343-420 36-109 (127)
259 COG3254 Uncharacterized conser 24.7 3E+02 0.0066 20.8 5.6 42 30-74 28-69 (105)
260 PRK14548 50S ribosomal protein 24.1 1.3E+02 0.0028 21.8 3.6 56 106-163 24-81 (84)
261 PTZ00191 60S ribosomal protein 23.8 3.1E+02 0.0066 22.2 5.9 55 346-403 85-141 (145)
262 PF02714 DUF221: Domain of unk 23.5 1.5E+02 0.0032 27.6 5.1 56 59-124 1-56 (325)
263 PRK13259 regulatory protein Sp 23.5 1.9E+02 0.0041 21.4 4.4 26 368-393 2-27 (94)
264 PF02714 DUF221: Domain of unk 23.3 92 0.002 29.0 3.6 35 146-185 1-35 (325)
265 PF08544 GHMP_kinases_C: GHMP 22.7 2.7E+02 0.0059 19.3 6.1 44 29-77 37-80 (85)
266 PF08734 GYD: GYD domain; Int 22.6 3.1E+02 0.0068 20.0 6.5 46 356-405 22-68 (91)
267 COG5193 LHP1 La protein, small 22.4 37 0.0008 32.1 0.7 60 342-401 174-243 (438)
268 PF01071 GARS_A: Phosphoribosy 21.9 3.5E+02 0.0075 23.2 6.4 53 27-83 25-77 (194)
269 PF02571 CbiJ: Precorrin-6x re 21.9 5.1E+02 0.011 23.1 7.8 68 41-112 94-162 (249)
270 PF13046 DUF3906: Protein of u 21.9 98 0.0021 20.9 2.4 32 28-61 32-63 (64)
271 KOG4008 rRNA processing protei 21.2 85 0.0019 27.4 2.5 34 341-374 39-72 (261)
272 KOG4019 Calcineurin-mediated s 21.1 1.1E+02 0.0023 25.7 2.9 74 103-183 11-89 (193)
273 PHA01632 hypothetical protein 20.5 1.1E+02 0.0024 19.8 2.3 22 16-37 18-39 (64)
274 PF13820 Nucleic_acid_bd: Puta 20.3 2.2E+02 0.0049 23.1 4.6 58 16-77 6-66 (149)
275 COG2088 SpoVG Uncharacterized 20.1 2.4E+02 0.0051 20.5 4.1 27 368-394 2-28 (95)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-52 Score=369.90 Aligned_cols=423 Identities=44% Similarity=0.686 Sum_probs=298.7
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
..++.++.+..++||+-+|..|+|+|||++|.+||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.+.+.|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 34667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeccCcccccc--cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014217 85 ASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~ 162 (428)
...++++++++.+.+.. +++|||+.|++.++|.+|+++|++||.|+++.|+++.++.+||||||+|.+.|.|..||+.
T Consensus 105 ~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred CCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHh
Confidence 99999999999888875 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHh-hh-hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCccc
Q 014217 163 INGKHKMEGSSVPLVVKWADTEKERQARRAQKAQ-SQ-ANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGS-YGLMQ 239 (428)
Q Consensus 163 l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (428)
||+...+.|+..||.|+||.+++.+..++.+... .+ +.............++.+++++..+...+.++.+.. ++ .-
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~-g~ 263 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG-GL 263 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc-cc
Confidence 9999999999999999999998887777653222 22 222223345556677777887777766555444332 22 11
Q ss_pred cCCCCCC----CCCcccccC-CCCC-CCCCCCC--CCCCCCCCC-CCCc-cCCCCCCC-CCC--------CCCCCCCCCC
Q 014217 240 YRLPPMQ----NQPGFHGII-PPVN-QGNAMRG--ASPDLSSNM-GPRN-YAMPPSGF-VGS--------GYPAVPGLQY 300 (428)
Q Consensus 240 ~~~~~~~----~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~~-~~~~-~~~~~~~~-~~~--------~~~~~~~~~~ 300 (428)
+...++. ++.....+. .+.. ..+...+ .....+.+. .+.+ ....+... ..+ ....+++...
T Consensus 264 ~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~ 343 (510)
T KOG0144|consen 264 PPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPA 343 (510)
T ss_pred cCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCch
Confidence 1111111 111111111 0000 0000000 000000000 0000 00000000 000 0000000000
Q ss_pred CCCCCCCC---------------CCCCCCCCCC------------------CCCCCCCC------CCCCCCCCCCCCCCC
Q 014217 301 PMPYPGGM---------------LGHRPLNNSP------------------GSVSPAVA------NSNPSTSSSGGTGPP 341 (428)
Q Consensus 301 ~~~~~~~~---------------~~~~~~~~~~------------------~~~~~~~~------~~~~~~~~~~~~~~~ 341 (428)
....+.++ .....+.... ....+... ...........+++.
T Consensus 344 ~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpe 423 (510)
T KOG0144|consen 344 NYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPE 423 (510)
T ss_pred hcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCC
Confidence 00000000 0000000000 00000000 000011112235677
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecC
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 421 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~ 421 (428)
+.++||.+||-+.-+.||...|..||.|.+.++..|+.+|.++.|+||.|++..+|..||..|||+.+++++++|.+.++
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~ 503 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRD 503 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCC
Q 014217 422 NKQNKPY 428 (428)
Q Consensus 422 ~~~~~~~ 428 (428)
+-...||
T Consensus 504 ~~np~~~ 510 (510)
T KOG0144|consen 504 RNNPYPR 510 (510)
T ss_pred cCCCCCC
Confidence 9888776
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.6e-50 Score=379.27 Aligned_cols=349 Identities=21% Similarity=0.363 Sum_probs=239.8
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
+..+|||+|||+++||++|+++|+.||+|.+|++++|+.+|+++|||||+|.+.++|.+||+.||+.. +.| +.+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g--~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQN--KTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECC--eeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999875 444 788888
Q ss_pred ccCccccc-ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 93 YADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 93 ~~~~~~~~-~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
+..+.... ..++|||+|||..+++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|.+|++.|+|.. +.
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~ 157 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PS 157 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cC
Confidence 87654432 36789999999999999999999999999999988765 67889999999999999999999999976 77
Q ss_pred CCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 014217 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (428)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (428)
|+..++.+.++...........+........ +.. .
T Consensus 158 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~-~~~--------------------------------------------~ 192 (352)
T TIGR01661 158 GCTEPITVKFANNPSSSNSKGLLSQLEAVQN-PQT--------------------------------------------T 192 (352)
T ss_pred CCceeEEEEECCCCCcCCchhcCchhhcccC-ccc--------------------------------------------C
Confidence 8777899999865432211100000000000 000 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (428)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (428)
..+...........+.... .......+............... ..+.... .....+. . ........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~--~-~~~~~~~~ 257 (352)
T TIGR01661 193 RVPLSTILTAAGIGPMHHA-------AARFRPSAGDFTAVLAHQQQQHA---VAQQHAA--QRASPPA--T-DGQTAGLA 257 (352)
T ss_pred CCCccccccccCCCCccCc-------ccccccCcchhhhhhhhhhhhcc---ccccccc--ccCCCcc--c-cccccccc
Confidence 0000000000000000000 00000000000000000000000 0000000 0000000 0 00000000
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 331 STSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 331 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
...........+.+|||+|||+++++++|+++|++||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|+
T Consensus 258 ~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 258 AGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred cCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 11111112345678999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CeEEEEEEecCCcCC
Q 014217 411 GKKLKVQLKRDNKQN 425 (428)
Q Consensus 411 g~~i~v~~a~~~~~~ 425 (428)
||.|+|+|+.++..+
T Consensus 338 gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 338 NRVLQVSFKTNKAYR 352 (352)
T ss_pred CeEEEEEEccCCCCC
Confidence 999999999988754
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-45 Score=305.69 Aligned_cols=321 Identities=26% Similarity=0.458 Sum_probs=240.9
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
......|.|.=||.++|++|||.+|+..|+|++|++++|+.+|++.||+||.|.+++||++|+..||+.++ ..+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---ccceEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999764 448899
Q ss_pred eeccCcccccc-cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCcc
Q 014217 91 VKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 168 (428)
Q Consensus 91 ~~~~~~~~~~~-~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~ 168 (428)
+.++.+..... ...|||++||+.+|..||.++|+.||.|..-+|+.+. +|.++|.+||+|+..++|++||..|||..
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~- 193 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK- 193 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-
Confidence 99988765543 6789999999999999999999999999888887766 89999999999999999999999999977
Q ss_pred CCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 014217 169 MEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQ 248 (428)
Q Consensus 169 ~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (428)
..|+.-+|.|+|+............. +....|.. .++ .+++++
T Consensus 194 P~g~tepItVKFannPsq~t~~a~ls---~ly~sp~r----------------------------r~~------Gp~hh~ 236 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALLS---QLYQSPAR----------------------------RYG------GPMHHQ 236 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhhH---HhhcCccc----------------------------cCC------Ccccch
Confidence 88888899999997663222211111 00000000 000 000000
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 249 PGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 328 (428)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (428)
..-..+-... ++.. +...++.+... .+.+....
T Consensus 237 ~~r~r~~~~~------------------~~~~----------~~~rfsP~~~d-----~m~~l~~~-------------- 269 (360)
T KOG0145|consen 237 AQRFRLDNLL------------------NPHA----------AQARFSPMTID-----GMSGLAGV-------------- 269 (360)
T ss_pred hhhhcccccc------------------chhh----------hhccCCCcccc-----ccceeeee--------------
Confidence 0000000000 0000 00000000000 00000000
Q ss_pred CCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 014217 329 NPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 408 (428)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 408 (428)
.-++....+.+|||.||.++.++.-|+++|..||.|..|+|++|..+++-+|||||.+.+-++|.-|+..|||..
T Consensus 270 -----~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 270 -----NLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred -----ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 000012245999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred eCCeEEEEEEecCCcC
Q 014217 409 LGGKKLKVQLKRDNKQ 424 (428)
Q Consensus 409 l~g~~i~v~~a~~~~~ 424 (428)
+++|.|.|.|.-++.+
T Consensus 345 lg~rvLQVsFKtnk~~ 360 (360)
T KOG0145|consen 345 LGDRVLQVSFKTNKAH 360 (360)
T ss_pred ccceEEEEEEecCCCC
Confidence 9999999999877653
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.5e-43 Score=350.40 Aligned_cols=257 Identities=28% Similarity=0.468 Sum_probs=222.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
.+|||+|||+++||++|+++|+.||.|.+|++.+|..|++++|||||+|.+.++|++|++.+|+..+ .| +.+++.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i-~g--k~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL-GG--KPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--eeEEeecc
Confidence 3799999999999999999999999999999999999999999999999999999999999988654 33 78888887
Q ss_pred Ccccc---cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCC
Q 014217 95 DGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (428)
Q Consensus 95 ~~~~~---~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g 171 (428)
..... ....+|||+|||.++++++|+++|+.||.|..+++..+.+|.++|||||+|.+.++|.+|++.+++.. +++
T Consensus 78 ~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~ 156 (562)
T TIGR01628 78 QRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML-LND 156 (562)
T ss_pred cccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE-ecC
Confidence 53222 22468999999999999999999999999999999999899999999999999999999999999976 666
Q ss_pred CcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc
Q 014217 172 SSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGF 251 (428)
Q Consensus 172 ~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (428)
+. +.|........+..
T Consensus 157 ~~--i~v~~~~~~~~~~~-------------------------------------------------------------- 172 (562)
T TIGR01628 157 KE--VYVGRFIKKHEREA-------------------------------------------------------------- 172 (562)
T ss_pred ce--EEEecccccccccc--------------------------------------------------------------
Confidence 65 66644332211100
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 252 HGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPS 331 (428)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (428)
T Consensus 173 -------------------------------------------------------------------------------- 172 (562)
T TIGR01628 173 -------------------------------------------------------------------------------- 172 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-
Q 014217 332 TSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 410 (428)
Q Consensus 332 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~- 410 (428)
......++|||+||+.++|+++|+++|+.||.|.++.|..+. +|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 173 -----~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 173 -----APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred -----ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 001133789999999999999999999999999999999985 8999999999999999999999999999999
Q ss_pred ---CeEEEEEEecCCcCC
Q 014217 411 ---GKKLKVQLKRDNKQN 425 (428)
Q Consensus 411 ---g~~i~v~~a~~~~~~ 425 (428)
|+.|.|.+++.+..+
T Consensus 247 ~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAER 264 (562)
T ss_pred cccceeeEeecccChhhh
Confidence 999999998776543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.7e-42 Score=345.97 Aligned_cols=272 Identities=28% Similarity=0.452 Sum_probs=226.7
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
.....+|||+|||.++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.+|+.. +.+ +.+.
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~--~~i~ 160 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGML-LND--KEVY 160 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccE-ecC--ceEE
Confidence 3456789999999999999999999999999999999987 68899999999999999999999998874 343 5555
Q ss_pred eeccCcc------cccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 014217 91 VKYADGE------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (428)
Q Consensus 91 ~~~~~~~------~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~ 164 (428)
+...... .....++|||+|||.++|+++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|+
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 5433221 1223578999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCccCC----CCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 014217 165 GKHKME----GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQY 240 (428)
Q Consensus 165 ~~~~~~----g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (428)
+.. +. |.. +.|.++....++...............
T Consensus 241 g~~-i~~~~~g~~--l~v~~a~~k~er~~~~~~~~~~~~~~~-------------------------------------- 279 (562)
T TIGR01628 241 GKK-IGLAKEGKK--LYVGRAQKRAEREAELRRKFEELQQER-------------------------------------- 279 (562)
T ss_pred CcE-eccccccee--eEeecccChhhhHHHHHhhHHhhhhhh--------------------------------------
Confidence 987 55 554 788888766554332211111110000
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 241 RLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGS 320 (428)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (428)
T Consensus 280 -------------------------------------------------------------------------------- 279 (562)
T TIGR01628 280 -------------------------------------------------------------------------------- 279 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHH
Q 014217 321 VSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 400 (428)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A 400 (428)
......++|||+||+.++++++|+++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+|
T Consensus 280 ----------------~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A 342 (562)
T TIGR01628 280 ----------------KMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRA 342 (562)
T ss_pred ----------------hcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHH
Confidence 01123478999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHHhcCceeCCeEEEEEEecCCcC
Q 014217 401 IAMMNGCQLGGKKLKVQLKRDNKQ 424 (428)
Q Consensus 401 ~~~l~g~~l~g~~i~v~~a~~~~~ 424 (428)
+..|||+.|+|++|.|.+|+.+..
T Consensus 343 ~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 343 VTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred HHHhcCCeeCCceeEEEeccCcHH
Confidence 999999999999999999998754
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.6e-43 Score=310.94 Aligned_cols=256 Identities=25% Similarity=0.453 Sum_probs=219.9
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
+...+...+.|||+.||.++.|+||..+|.+.|.|-++++|.|+.+|.++|||||.|++.++|+.||+.||+..+-.|
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G-- 153 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG-- 153 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC--
Confidence 344567889999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CcceeeccCcccccccceEEEecCCCCCCHHHHHHhccccC-CeEEEEEccCC--CCCcccEEEEEeCCHHHHHHHHHHH
Q 014217 87 SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAI 163 (428)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~--~g~~~g~afV~f~~~e~a~~a~~~l 163 (428)
+.|.+..+. .+++|||+|+|+++++++|.+.|++.+ .|..|.+.... .++++|||||+|.+...|.-|.++|
T Consensus 154 K~igvc~Sv-----an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 154 KLLGVCVSV-----ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred CEeEEEEee-----ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 555554332 248999999999999999999999997 67888887665 4578899999999999999888876
Q ss_pred c-CCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCC
Q 014217 164 N-GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRL 242 (428)
Q Consensus 164 ~-~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (428)
- +...+.|+. +.|+||.++.+.....
T Consensus 229 ~~g~~klwgn~--~tVdWAep~~e~ded~--------------------------------------------------- 255 (506)
T KOG0117|consen 229 MPGKIKLWGNA--ITVDWAEPEEEPDEDT--------------------------------------------------- 255 (506)
T ss_pred cCCceeecCCc--ceeeccCcccCCChhh---------------------------------------------------
Confidence 4 433356665 8999997764222110
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVS 322 (428)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (428)
T Consensus 256 -------------------------------------------------------------------------------- 255 (506)
T KOG0117|consen 256 -------------------------------------------------------------------------------- 255 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHH
Q 014217 323 PAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 402 (428)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~ 402 (428)
-..-..|||+||+.++|+|.|+.+|+.||.|.+|+.++| ||||.|.+.++|.+||+
T Consensus 256 ----------------ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 256 ----------------MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ----------------hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 012388999999999999999999999999999998865 89999999999999999
Q ss_pred HhcCceeCCeEEEEEEecCCcCCC
Q 014217 403 MMNGCQLGGKKLKVQLKRDNKQNK 426 (428)
Q Consensus 403 ~l~g~~l~g~~i~v~~a~~~~~~~ 426 (428)
.+||+.|+|..|.|.+||+....+
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HhcCceecCceEEEEecCChhhhc
Confidence 999999999999999999876544
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.7e-42 Score=330.27 Aligned_cols=250 Identities=25% Similarity=0.449 Sum_probs=207.8
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.+...++|||+|||++++|++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.||+..+..+ +.+
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G--r~l 130 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG--RLL 130 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC--ccc
Confidence 3456799999999999999999999999999999999999 6899999999999999999999999999876555 455
Q ss_pred eeeccCcccccccceEEEecCCCCCCHHHHHHhccccCC-eEEEEEccC--CCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 014217 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRG--SQQTSKGCAFLKYETKEQALAALEAINGK 166 (428)
Q Consensus 90 ~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~--~~g~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (428)
.+.++. ..++|||+|||.++++++|.++|+.++. +.++.+... ..+.++|||||+|.+.++|..|++.|+..
T Consensus 131 ~V~~S~-----~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 131 GVCISV-----DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cccccc-----cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 555443 2578999999999999999999999863 455554433 24567899999999999999999988643
Q ss_pred c-cCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 014217 167 H-KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPM 245 (428)
Q Consensus 167 ~-~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (428)
. .+.|+. |.|+|+.++......
T Consensus 206 ki~l~Gr~--I~VdwA~p~~~~d~~------------------------------------------------------- 228 (578)
T TIGR01648 206 RIQLWGHV--IAVDWAEPEEEVDED------------------------------------------------------- 228 (578)
T ss_pred ceEecCce--EEEEeeccccccccc-------------------------------------------------------
Confidence 3 255654 788888553211000
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 246 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAV 325 (428)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (428)
T Consensus 229 -------------------------------------------------------------------------------- 228 (578)
T TIGR01648 229 -------------------------------------------------------------------------------- 228 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcC--CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q 014217 326 ANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 403 (428)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 403 (428)
.....++|||+||+.++++++|+++|+.| |.|.+|+++ ++||||+|.+.++|.+|++.
T Consensus 229 ------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 229 ------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred ------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHH
Confidence 01134799999999999999999999999 999999875 35999999999999999999
Q ss_pred hcCceeCCeEEEEEEecCCcC
Q 014217 404 MNGCQLGGKKLKVQLKRDNKQ 424 (428)
Q Consensus 404 l~g~~l~g~~i~v~~a~~~~~ 424 (428)
|||..|+|+.|+|+||+.+..
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred hCCCEECCEEEEEEEccCCCc
Confidence 999999999999999987654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.3e-40 Score=320.95 Aligned_cols=335 Identities=21% Similarity=0.288 Sum_probs=211.6
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcC-CCCCCCCCCccee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTLPGASSPLQV 91 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~-~~~~~~~~~~~~~ 91 (428)
.+++|||+|||+++|+++|+++|+.||.|.+|++++++ |||||+|.+.++|++|++.++. ...+.| +.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRG--QPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEE
Confidence 47899999999999999999999999999999998653 6999999999999999998642 233554 78888
Q ss_pred eccCccc-c--c----------ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHH
Q 014217 92 KYADGEL-E--R----------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158 (428)
Q Consensus 92 ~~~~~~~-~--~----------~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~ 158 (428)
.|+.... . . ...+|+|+||++.+++++|+++|+.||.|.+|.+.++.. +++|||+|.+.++|.+
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQH 149 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHH
Confidence 8764321 0 0 113689999999999999999999999999999977542 4699999999999999
Q ss_pred HHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 014217 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLM 238 (428)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (428)
|++.|||..+.++. ..+.|.|++........... ...+ + ..+... + ....+..
T Consensus 150 A~~~Lng~~i~~~~-~~l~v~~sk~~~l~v~~~~~---------~s~d------y-------t~~~l~-~---~~~~~~~ 202 (481)
T TIGR01649 150 AKAALNGADIYNGC-CTLKIEYAKPTRLNVKYNDD---------DSRD------Y-------TNPDLP-G---RRDPGLD 202 (481)
T ss_pred HHHHhcCCcccCCc-eEEEEEEecCCCceeEeccc---------CCCC------C-------cCCCCC-C---CCCCCcC
Confidence 99999999855543 46899998764321111000 0000 0 000000 0 0000000
Q ss_pred ccCCCCCCCCCcccccCCCCC-CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 239 QYRLPPMQNQPGFHGIIPPVN-QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNS 317 (428)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
. ...+.+..+.. ..+.. .............. ...+..+.+. . ..+....
T Consensus 203 ~---~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~---------------------~---~~~~~~~ 252 (481)
T TIGR01649 203 Q---THRQRQPALLG-QHPSSYGHDGYSSHGGPLAP--LAGGDRMGPP---------------------H---GPPSRYR 252 (481)
T ss_pred c---ccccccccccc-CCCccCCCcccccCCCCCCc--ccccccCCCc---------------------c---cCCCCCc
Confidence 0 00000000000 00000 00000000000000 0000000000 0 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHH
Q 014217 318 PGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 396 (428)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~ 396 (428)
......... ............++++|||+||+. .+|+++|+++|+.||.|.+|+|++++ +|+|||+|.+.++
T Consensus 253 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~ 325 (481)
T TIGR01649 253 PAYEAAPLA--PAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQ 325 (481)
T ss_pred ccccccccC--ccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHH
Confidence 000000000 000000011244679999999997 69999999999999999999999874 5899999999999
Q ss_pred HHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 397 AQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 397 A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
|..|+..|||..|.|++|+|.+++..
T Consensus 326 A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 326 AQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHhCCCEECCceEEEEEcccc
Confidence 99999999999999999999998764
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.2e-39 Score=309.44 Aligned_cols=166 Identities=20% Similarity=0.359 Sum_probs=145.8
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
...++|||+|||+++++++|+++|+.||+|.+|+++.|+.+++++|||||+|.+.++|++|++.||+.. +.| +.|++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~G--R~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eec--ceeee
Confidence 456899999999999999999999999999999999999999999999999999999999999998865 555 66766
Q ss_pred eccCccc------------ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHH
Q 014217 92 KYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (428)
Q Consensus 92 ~~~~~~~------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~ 158 (428)
.++.... ....++|||+||+.++++++|+++|+.||.|.++++.++. +|.++|||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 6543211 1124689999999999999999999999999999999886 56789999999999999999
Q ss_pred HHHHHcCCccCCCCcceEEEEeCCC
Q 014217 159 ALEAINGKHKMEGSSVPLVVKWADT 183 (428)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (428)
|++.||+.. ++|+. |.|.++..
T Consensus 262 AI~amNg~e-lgGr~--LrV~kAi~ 283 (612)
T TIGR01645 262 AIASMNLFD-LGGQY--LRVGKCVT 283 (612)
T ss_pred HHHHhCCCe-eCCeE--EEEEecCC
Confidence 999999987 78876 88888864
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.6e-38 Score=311.90 Aligned_cols=167 Identities=29% Similarity=0.476 Sum_probs=143.5
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+||+ |++.. +.| +.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g--~~i 160 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLG--RPI 160 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECC--eee
Confidence 34567899999999999999999999999999999999999999999999999999999999996 66665 444 566
Q ss_pred eeeccCcccc-------------cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHH
Q 014217 90 QVKYADGELE-------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQ 155 (428)
Q Consensus 90 ~~~~~~~~~~-------------~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~ 155 (428)
.+.+...... ...++|||+|||..+++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 6655432111 114789999999999999999999999999999998876 55889999999999999
Q ss_pred HHHHHHHHcCCccCCCCcceEEEEeCCC
Q 014217 156 ALAALEAINGKHKMEGSSVPLVVKWADT 183 (428)
Q Consensus 156 a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (428)
|..|++.|+|.. +.|+. |.|.++..
T Consensus 241 A~~A~~~l~g~~-i~g~~--i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFE-LAGRP--IKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcE-ECCEE--EEEEEccC
Confidence 999999999976 67765 88999863
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=290.54 Aligned_cols=329 Identities=24% Similarity=0.352 Sum_probs=229.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
..+|||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+++++|++..++.+ +.| +.+.+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~G--r~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEG--RILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-ccc--eeccccc
Confidence 3899999999999999999999999999999999999999999999999999999999999998876 444 5555544
Q ss_pred cCcccccc---------------------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEE
Q 014217 94 ADGELERL---------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 146 (428)
Q Consensus 94 ~~~~~~~~---------------------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~a 146 (428)
+....... ..+|+|+|||..+.+.+|+.+|+.||.|..|.|++..+|.-.|||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFa 161 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFA 161 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceE
Confidence 32111110 357999999999999999999999999999999998888777999
Q ss_pred EEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHH------HhhhhccCC-CCCCCC--CCCCCCCC
Q 014217 147 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK------AQSQANNLP-NADSQH--PSLFGALP 217 (428)
Q Consensus 147 fV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~--~~~~~~~~ 217 (428)
||+|....+|..|++.+|+.. ++|+. |-|+||.++.......... ......+.. ..+... ....+..-
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~-i~gR~--VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d 238 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNK-IDGRP--VAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEED 238 (678)
T ss_pred EEEEeeHHHHHHHHHhccCce-ecCce--eEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccc
Confidence 999999999999999999987 88876 8999998776544322111 000000000 000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 014217 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPG 297 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (428)
. .+ -. ...+ ....+.
T Consensus 239 ~----------------ed----------------------------------------eE-------e~D~-~se~~e- 253 (678)
T KOG0127|consen 239 S----------------ED----------------------------------------EE-------ETDG-NSEAFE- 253 (678)
T ss_pred c----------------cc----------------------------------------cc-------cccc-cchhhh-
Confidence 0 00 00 0000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEE
Q 014217 298 LQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSS----GGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAK 373 (428)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~ 373 (428)
.+............ ..++. ...+..... .....-+.||||+|||+++|+++|.++|++||.|.++.
T Consensus 254 e~~~~Eee~~~vDd--------~e~S~--~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 254 EGEESEEEEDDVDD--------EESSG--KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred cccccccccccccc--------ccccc--cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 00000000000000 00000 000000001 11233459999999999999999999999999999999
Q ss_pred EEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-----cC-ceeCCeEEEEEEecCCc
Q 014217 374 VFVDKATGVSKCFGFVSYESPASAQNAIAMM-----NG-CQLGGKKLKVQLKRDNK 423 (428)
Q Consensus 374 i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l-----~g-~~l~g~~i~v~~a~~~~ 423 (428)
|+.++.+++++|+|||.|.+..+|+.||... .| ..|+||.|.|.+|=.++
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 9999999999999999999999999999876 34 67899999999886554
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.6e-36 Score=296.48 Aligned_cols=281 Identities=22% Similarity=0.332 Sum_probs=205.8
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
...+|||+||++++|+++|+++|+.||.|.+|.++++.. +|+|||+|.+.++|.+|++.||+..+..+ ...+++.
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~ 169 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIE 169 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEE
Confidence 345899999999999999999999999999999988653 36999999999999999999999876543 2233332
Q ss_pred ccCc----------cc----------------------------------------------------------------
Q 014217 93 YADG----------EL---------------------------------------------------------------- 98 (428)
Q Consensus 93 ~~~~----------~~---------------------------------------------------------------- 98 (428)
|++. ..
T Consensus 170 ~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
T TIGR01649 170 YAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPS 249 (481)
T ss_pred EecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCC
Confidence 2210 00
Q ss_pred ----------------------ccccceEEEecCCC-CCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHH
Q 014217 99 ----------------------ERLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQ 155 (428)
Q Consensus 99 ----------------------~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~ 155 (428)
....++|||+||+. .+++++|+++|+.||.|.+|+++.++ +|+|||+|.+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~ 325 (481)
T TIGR01649 250 RYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQ 325 (481)
T ss_pred CCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHH
Confidence 01245899999997 69999999999999999999998763 6899999999999
Q ss_pred HHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 156 ALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSY 235 (428)
Q Consensus 156 a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (428)
|..|++.|++.. +.|+. |.|.++..+...... ....+ .+ ...+..+.
T Consensus 326 A~~Ai~~lng~~-l~g~~--l~v~~s~~~~~~~~~--------~~~~~--------------~~-~~~~~d~~------- 372 (481)
T TIGR01649 326 AQLALTHLNGVK-LFGKP--LRVCPSKQQNVQPPR--------EGQLD--------------DG-LTSYKDYS------- 372 (481)
T ss_pred HHHHHHHhCCCE-ECCce--EEEEEcccccccCCC--------CCcCc--------------CC-Cccccccc-------
Confidence 999999999987 67765 888877543210000 00000 00 00000000
Q ss_pred CccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLN 315 (428)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (428)
+. ....+..
T Consensus 373 -----------------------------------------------------~~--------------~~~r~~~---- 381 (481)
T TIGR01649 373 -----------------------------------------------------SS--------------RNHRFKK---- 381 (481)
T ss_pred -----------------------------------------------------CC--------------ccccCCC----
Confidence 00 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCC--eEEEEEEeeCCCCCeeeEEEEEecC
Q 014217 316 NSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYES 393 (428)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~F~~ 393 (428)
+.........++..+|||+|||.++++++|+++|+.||. |.+|++...+ ++ .+|+|||+|.+
T Consensus 382 --------------~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~ 445 (481)
T TIGR01649 382 --------------PGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWES 445 (481)
T ss_pred --------------cccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCC
Confidence 000000001236689999999999999999999999998 8888886554 33 58999999999
Q ss_pred HHHHHHHHHHhcCceeCCeE------EEEEEecCC
Q 014217 394 PASAQNAIAMMNGCQLGGKK------LKVQLKRDN 422 (428)
Q Consensus 394 ~e~A~~A~~~l~g~~l~g~~------i~v~~a~~~ 422 (428)
.++|..|+..|||+.|+|+. |+|+|++++
T Consensus 446 ~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 446 VEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999999999999985 999999875
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=8e-36 Score=296.86 Aligned_cols=275 Identities=19% Similarity=0.322 Sum_probs=199.8
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhc------------CceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHh
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEF------------ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l 76 (428)
......++|||+|||+++|+++|++||..+ +.|..+.+ ++.+|||||+|.+.++|..||+ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345567899999999999999999999975 23443333 3456899999999999999994 8
Q ss_pred cCCCCCCCCCCcceeeccCccc------------------------------ccccceEEEecCCCCCCHHHHHHhcccc
Q 014217 77 HNKKTLPGASSPLQVKYADGEL------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIY 126 (428)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~ 126 (428)
++.. +.| +.|++..+.... ....++|||+|||..+++++|+++|+.|
T Consensus 243 ~g~~-~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 243 DSII-YSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCeE-eeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 7764 444 556654332111 1124689999999999999999999999
Q ss_pred CCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCC
Q 014217 127 GTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNA 205 (428)
Q Consensus 127 G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 205 (428)
|.|..+.++.+. +|.++|||||+|.+.++|..|++.|+|.. +.|+. |.|.++......... ...
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~~~--l~v~~a~~~~~~~~~------------~~~ 384 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGDNK--LHVQRACVGANQATI------------DTS 384 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECCeE--EEEEECccCCCCCCc------------ccc
Confidence 999999998775 78899999999999999999999999987 66665 788887432100000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 014217 206 DSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPS 285 (428)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (428)
.+..+ ....+.
T Consensus 385 -------~~~~~--------------------------------------------------------------~~~~~~ 395 (509)
T TIGR01642 385 -------NGMAP--------------------------------------------------------------VTLLAK 395 (509)
T ss_pred -------ccccc--------------------------------------------------------------cccccc
Confidence 00000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC--C--------C
Q 014217 286 GFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQE--F--------G 355 (428)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~--~--------t 355 (428)
.. .. ........+..+|+|.||... + .
T Consensus 396 ~~-----------------~~--------------------------~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~ 432 (509)
T TIGR01642 396 AL-----------------SQ--------------------------SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEI 432 (509)
T ss_pred cc-----------------hh--------------------------hhccccCCCceEEEeccCCchhHhcCcchHHHH
Confidence 00 00 000001224589999999642 1 2
Q ss_pred HHHHHHHhhcCCCeEEEEEEeeC---CCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 356 DQELGNAFQAFGRVLSAKVFVDK---ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 356 ~~~L~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.++|+++|+.||.|.+|.|+++. ..+.+.|+|||+|.+.++|..|+..|||+.|+|+.|.|.|..
T Consensus 433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 46899999999999999998652 345668999999999999999999999999999999999864
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-36 Score=251.49 Aligned_cols=232 Identities=22% Similarity=0.499 Sum_probs=186.6
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
+.+-++|||+||..++||+-|..||+..|+|.+++++.|. ++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e--------------------------------------~~ 44 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE--------------------------------------LK 44 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh--------------------------------------hc
Confidence 4566899999999999999999999999999999998872 11
Q ss_pred eeccCc----ccccc--cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHH
Q 014217 91 VKYADG----ELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAI 163 (428)
Q Consensus 91 ~~~~~~----~~~~~--~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l 163 (428)
+.|+.. .+... .--|||+.|...++-|+|++.|.+||+|.+.+|++|. +++++||+||.|.+.++|+.||..+
T Consensus 45 v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 45 VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 111110 00110 2358999999999999999999999999999999997 8899999999999999999999999
Q ss_pred cCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 014217 164 NGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLP 243 (428)
Q Consensus 164 ~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (428)
||.= +.++. |+-.||..+...... .+ ..
T Consensus 125 nGqW-lG~R~--IRTNWATRKp~e~n~-------------------------~~---------lt--------------- 152 (321)
T KOG0148|consen 125 NGQW-LGRRT--IRTNWATRKPSEMNG-------------------------KP---------LT--------------- 152 (321)
T ss_pred CCee-eccce--eeccccccCccccCC-------------------------CC---------cc---------------
Confidence 9963 55554 888898665200000 00 00
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 244 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323 (428)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (428)
+
T Consensus 153 --------------------------------------------------------f----------------------- 153 (321)
T KOG0148|consen 153 --------------------------------------------------------F----------------------- 153 (321)
T ss_pred --------------------------------------------------------H-----------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q 014217 324 AVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 403 (428)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 403 (428)
++.-+...+++|+|||+|++..+|+++|++.|+.||.|..|+|.+++ ||+||+|.+.|.|..||..
T Consensus 154 --------deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 154 --------DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred --------HHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHH
Confidence 00000023367999999999999999999999999999999999996 9999999999999999999
Q ss_pred hcCceeCCeEEEEEEecCCcCC
Q 014217 404 MNGCQLGGKKLKVQLKRDNKQN 425 (428)
Q Consensus 404 l~g~~l~g~~i~v~~a~~~~~~ 425 (428)
+|+..++|+.+++.|.|.....
T Consensus 220 mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred hcCceeCceEEEEeccccCCCC
Confidence 9999999999999999987654
No 15
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.3e-34 Score=237.09 Aligned_cols=332 Identities=40% Similarity=0.620 Sum_probs=209.9
Q ss_pred CCcceeeccCccccc-ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 014217 86 SSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~-~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~ 164 (428)
.+++.++.++.+.+. .+++|||+.|.+.-+|||++.+|..||.|+++.+.+..+|.++|+|||+|.+..+|..||+.|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 377888888776665 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCC---------------CCCCCCCCCCC-
Q 014217 165 GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALP---------------MGYAPPYNGYG- 228 (428)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~- 228 (428)
|...+.|-...+.|+++..++++..+++++...+.........+... ++... ..+..+.....
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~-~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~ 160 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGA-YGAYAQALMQQQAALLATVAGPYLSPMAAFAA 160 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccch-hHHHHHHHHHHHHHHHHhhcccccChhhhhHH
Confidence 99989998889999999999999999998887765443221110000 00000 00000000000
Q ss_pred --CCCCCCCCccccCCCCCCCCC-cccccCCCCC------CCCCCCCCCCCCCCCCC-----------CCccCCCCCCCC
Q 014217 229 --YQASGSYGLMQYRLPPMQNQP-GFHGIIPPVN------QGNAMRGASPDLSSNMG-----------PRNYAMPPSGFV 288 (428)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 288 (428)
.+.-+....+.....++.... ...+-..... ......+..+....+.+ ..++....+...
T Consensus 161 ~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va 240 (371)
T KOG0146|consen 161 AQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVA 240 (371)
T ss_pred HHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCcccc
Confidence 000000000000000000000 0000000000 00000000000000000 000000000001
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCC
Q 014217 289 GSGYPAVPGL-QYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFG 367 (428)
Q Consensus 289 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 367 (428)
.....+.++. +|...+|.. ..+..+......+......-+++++|+|||..||.+..+.+|...|-.||
T Consensus 241 ~~lq~a~~g~~~Y~Aaypaa----------ys~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG 310 (371)
T KOG0146|consen 241 DPLQQAYAGVQQYAAAYPAA----------YSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG 310 (371)
T ss_pred chhhhhhhhHHHHhhhcchh----------hhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc
Confidence 1111111111 122222211 11111122222222223344677899999999999999999999999999
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCCcCCCCC
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQNKPY 428 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~~~~~~~ 428 (428)
.|++.++.+|+.|+.+|.||||.|.|+.+|+.|+.+|||+.++=++|+|.+.|.|.+++||
T Consensus 311 hivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 311 HIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 371 (371)
T ss_pred ceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-33 Score=259.66 Aligned_cols=245 Identities=28% Similarity=0.486 Sum_probs=216.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
..|||+ +++||.+|.++|+++|++.++++.+|. | +.|||||.|.++++|.+||+.+|... +. ++++++.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~-~~--~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDV-LK--GKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcc-cC--CcEEEeehh
Confidence 468998 999999999999999999999999998 6 99999999999999999999998865 44 489999998
Q ss_pred CcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Q 014217 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (428)
Q Consensus 95 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~ 174 (428)
..... .|||.||++.++..+|+++|+.||.|++|++..+..| ++|| ||+|++++.|.+|++.+||.. +.+..
T Consensus 73 ~rd~~----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~kk- 144 (369)
T KOG0123|consen 73 QRDPS----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML-LNGKK- 144 (369)
T ss_pred ccCCc----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc-cCCCe-
Confidence 64433 2999999999999999999999999999999999988 8999 999999999999999999975 77776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccc
Q 014217 175 PLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGI 254 (428)
Q Consensus 175 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (428)
++|.....+.++....-. .
T Consensus 145 -i~vg~~~~~~er~~~~~~-~----------------------------------------------------------- 163 (369)
T KOG0123|consen 145 -IYVGLFERKEEREAPLGE-Y----------------------------------------------------------- 163 (369)
T ss_pred -eEEeeccchhhhcccccc-h-----------------------------------------------------------
Confidence 888888776655433110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 255 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSS 334 (428)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (428)
T Consensus 164 -------------------------------------------------------------------------------- 163 (369)
T KOG0123|consen 164 -------------------------------------------------------------------------------- 163 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 335 SGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 335 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
...-++++|.|++.+++++.|.++|+.||.|.++.++.+. .++++||+||+|.++++|..|+..|||..++|..+
T Consensus 164 ----~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~ 238 (369)
T KOG0123|consen 164 ----KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKEL 238 (369)
T ss_pred ----hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccce
Confidence 0123789999999999999999999999999999999996 78899999999999999999999999999999999
Q ss_pred EEEEecCC
Q 014217 415 KVQLKRDN 422 (428)
Q Consensus 415 ~v~~a~~~ 422 (428)
.|..++.+
T Consensus 239 ~V~~aqkk 246 (369)
T KOG0123|consen 239 YVGRAQKK 246 (369)
T ss_pred eecccccc
Confidence 99888764
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-32 Score=251.45 Aligned_cols=265 Identities=31% Similarity=0.523 Sum_probs=217.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccC
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 95 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 95 (428)
.|||.||++++|..+|.++|+.||.|.+|++..+.. | ++|| ||+|.++++|++|++.+||. ++.+ ..+-+....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~-ll~~--kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGM-LLNG--KKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCc-ccCC--CeeEEeecc
Confidence 399999999999999999999999999999999985 4 9999 99999999999999999986 3544 333332221
Q ss_pred c--c-------cccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 014217 96 G--E-------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (428)
Q Consensus 96 ~--~-------~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (428)
. + .......+++.+++.+++.+.|.++|+.+|.|..+.+..+..|.+++|+||.|.+.++|..|++.+++.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 1 1 122356789999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCcceEEEEeCCCHHHHHHHHHHHHh-hhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 014217 167 HKMEGSSVPLVVKWADTEKERQARRAQKAQ-SQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPM 245 (428)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (428)
. +.+.. +.|..+....++......... ......
T Consensus 232 ~-~~~~~--~~V~~aqkk~e~~~~l~~~~~~~~~~~~------------------------------------------- 265 (369)
T KOG0123|consen 232 I-FGDKE--LYVGRAQKKSEREAELKRKFEQEFAKRS------------------------------------------- 265 (369)
T ss_pred c-CCccc--eeecccccchhhHHHHhhhhHhhhhhcc-------------------------------------------
Confidence 6 55554 677666553333222111100 000000
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 246 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAV 325 (428)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (428)
T Consensus 266 -------------------------------------------------------------------------------- 265 (369)
T KOG0123|consen 266 -------------------------------------------------------------------------------- 265 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 014217 326 ANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 405 (428)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 405 (428)
......+|||+|++..++.+.|+..|+.||+|.+++|+.+. .|+++|||||.|.+.++|..|+..+|
T Consensus 266 ------------~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n 332 (369)
T KOG0123|consen 266 ------------VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMN 332 (369)
T ss_pred ------------ccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhC
Confidence 11245889999999999999999999999999999999995 89999999999999999999999999
Q ss_pred CceeCCeEEEEEEecCCcCC
Q 014217 406 GCQLGGKKLKVQLKRDNKQN 425 (428)
Q Consensus 406 g~~l~g~~i~v~~a~~~~~~ 425 (428)
|..++++.|.|.+++.+..+
T Consensus 333 ~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 333 GRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred hhhhcCCchhhhHHhhhccc
Confidence 99999999999999865544
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.9e-32 Score=249.66 Aligned_cols=173 Identities=28% Similarity=0.501 Sum_probs=155.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.++++|++||+.||+..+ .+ +
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l-~g--r 177 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV-RN--K 177 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc-CC--c
Confidence 35667889999999999999999999999999999999999999999999999999999999999999998764 33 7
Q ss_pred cceeeccCcccc-cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 88 PLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
.|++.++.+... ...++|||+|||..+++++|+++|++||.|..+.|++++ ++.++++|||+|.+.++|++|++.|++
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 888888765433 236789999999999999999999999999999998876 888999999999999999999999999
Q ss_pred CccCCCCcceEEEEeCCCH
Q 014217 166 KHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (428)
.. +.+...+|.|.++...
T Consensus 258 ~~-~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 258 VI-PEGGSQPLTVRLAEEH 275 (346)
T ss_pred Cc-cCCCceeEEEEECCcc
Confidence 76 6777678999999764
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.1e-32 Score=248.40 Aligned_cols=170 Identities=25% Similarity=0.489 Sum_probs=150.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEE
Q 014217 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (428)
Q Consensus 101 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (428)
..++|||+|||.++++++|+++|+.||.|..|+|+.+. +++++|||||+|.++++|.+|++.|++.. +.++. |.|.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~gr~--i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRNKR--LKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCCce--eeee
Confidence 36899999999999999999999999999999998875 78899999999999999999999999977 55554 7887
Q ss_pred eCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCC
Q 014217 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (428)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
++.+..
T Consensus 183 ~a~p~~-------------------------------------------------------------------------- 188 (346)
T TIGR01659 183 YARPGG-------------------------------------------------------------------------- 188 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 764321
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (428)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
..
T Consensus 189 ------------------------------------------------------------------------------~~ 190 (346)
T TIGR01659 189 ------------------------------------------------------------------------------ES 190 (346)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQ 417 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~ 417 (428)
...++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..+.| ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 023689999999999999999999999999999999999899999999999999999999999999999876 799999
Q ss_pred EecCCcCC
Q 014217 418 LKRDNKQN 425 (428)
Q Consensus 418 ~a~~~~~~ 425 (428)
+++.+...
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 99876543
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=226.39 Aligned_cols=164 Identities=20% Similarity=0.367 Sum_probs=140.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
.|+|||+.+.+...|+.||..|..||+|++|.+.-|+.|++++|||||+|+-++.|+.|++.||+. +++| +.+++..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGG--RNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGG--RNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccC--ccccccC
Confidence 489999999999999999999999999999999999999999999999999999999999999886 6777 6676654
Q ss_pred cCccc------------ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCC-CcccEEEEEeCCHHHHHHHH
Q 014217 94 ADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAAL 160 (428)
Q Consensus 94 ~~~~~------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g-~~~g~afV~f~~~e~a~~a~ 160 (428)
+..-. .+.-++|||..+.++.+++||+.+|+.||+|..|.+-+.+++ ..+||+|++|.+..+-.+|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 42111 111478999999999999999999999999999999998866 45899999999999999999
Q ss_pred HHHcCCccCCCCcceEEEEeCCC
Q 014217 161 EAINGKHKMEGSSVPLVVKWADT 183 (428)
Q Consensus 161 ~~l~~~~~~~g~~~~l~v~~a~~ 183 (428)
..+|-.. +.|+. ++|..+..
T Consensus 270 asMNlFD-LGGQy--LRVGk~vT 289 (544)
T KOG0124|consen 270 ASMNLFD-LGGQY--LRVGKCVT 289 (544)
T ss_pred hhcchhh-cccce--EecccccC
Confidence 8888654 56664 66665543
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.9e-29 Score=244.47 Aligned_cols=179 Identities=23% Similarity=0.433 Sum_probs=149.9
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.++|||+|||+++++++|+++|+.||.|.+|.+..++ +|.++|||||+|.+.++|.+|++.|||.. ++|+. |.|.+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~GR~--IkV~r 183 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGRN--IKVGR 183 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eecce--eeecc
Confidence 5789999999999999999999999999999998875 78899999999999999999999999976 78886 66653
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
..... ... +
T Consensus 184 p~~~p------------------~a~----------------~------------------------------------- 192 (612)
T TIGR01645 184 PSNMP------------------QAQ----------------P------------------------------------- 192 (612)
T ss_pred ccccc------------------ccc----------------c-------------------------------------
Confidence 21100 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
... .......
T Consensus 193 -----------------------------------------------~~~-----------------------~~~~~~~ 202 (612)
T TIGR01645 193 -----------------------------------------------IID-----------------------MVQEEAK 202 (612)
T ss_pred -----------------------------------------------ccc-----------------------ccccccc
Confidence 000 0000111
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+||+.++++++|+++|+.||.|.+|+|.+++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
.++.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 7654
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=2.1e-29 Score=231.89 Aligned_cols=165 Identities=27% Similarity=0.462 Sum_probs=143.3
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
....++.+.++||+.-|+-..++-||.+||+.+|.|..|+++.|..+++++|.|||+|.+.+.+..|| .|.|+.++ |
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll-g- 247 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL-G- 247 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc-C-
Confidence 34557788899999999999999999999999999999999999999999999999999999999998 66676543 3
Q ss_pred CCcceeeccCcccccc---------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEE
Q 014217 86 SSPLQVKYADGELERL---------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLK 149 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~---------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~ 149 (428)
.+|.++.+..++... -..|||+||..++++++|+.+|+.||.|+.|.+..+. +|+++||+||+
T Consensus 248 -~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 248 -VPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred -ceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 777777664333221 1238999999999999999999999999999999887 99999999999
Q ss_pred eCCHHHHHHHHHHHcCCccCCCCcce
Q 014217 150 YETKEQALAALEAINGKHKMEGSSVP 175 (428)
Q Consensus 150 f~~~e~a~~a~~~l~~~~~~~g~~~~ 175 (428)
|.+.++|+.|+..|||.. +-|+.+.
T Consensus 327 f~~~~~ar~a~e~lngfe-lAGr~ik 351 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFE-LAGRLIK 351 (549)
T ss_pred EecHHHHHHHHHHhccce-ecCceEE
Confidence 999999999999999944 7888633
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.7e-29 Score=224.94 Aligned_cols=172 Identities=30% Similarity=0.592 Sum_probs=159.0
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.-++||+-+|..++|+||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+.+|+....+.|.+.+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 5689999999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
|..+.++.
T Consensus 114 Ad~E~er~------------------------------------------------------------------------ 121 (510)
T KOG0144|consen 114 ADGERERI------------------------------------------------------------------------ 121 (510)
T ss_pred cchhhhcc------------------------------------------------------------------------
Confidence 98775432
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
.
T Consensus 122 -------------------------------------------------------------------------------~ 122 (510)
T KOG0144|consen 122 -------------------------------------------------------------------------------V 122 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce-eCC--eEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ-LGG--KKLKVQ 417 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~-l~g--~~i~v~ 417 (428)
..+.|||+-|+..+|+.+++++|++||.|.+|.|++|. .+.+||||||+|.+.|.|..|++.|||.. ++| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 34789999999999999999999999999999999996 99999999999999999999999999987 555 789999
Q ss_pred EecCCcCC
Q 014217 418 LKRDNKQN 425 (428)
Q Consensus 418 ~a~~~~~~ 425 (428)
||..++.+
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99988765
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=230.88 Aligned_cols=258 Identities=24% Similarity=0.398 Sum_probs=203.4
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.......++|+|||..+..++|...|..||.|..+.+. + .| --++|+|.++.+|..|...|....+... ++
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~---pl 451 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSA---PL 451 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-cc---ceeeeeecCccchHHHHHHhchhhhccC---cc
Confidence 56677899999999999999999999999999987333 2 12 1499999999999999999876544221 22
Q ss_pred eeeccCccccc---------------------------------------------------ccceEEEecCCCCCCHHH
Q 014217 90 QVKYADGELER---------------------------------------------------LEHKLFIGMLPKNVSEAE 118 (428)
Q Consensus 90 ~~~~~~~~~~~---------------------------------------------------~~~~v~v~nlp~~~t~~~ 118 (428)
.+.|.-..... ..++|||.||+..++.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 22221000000 013499999999999999
Q ss_pred HHHhccccCCeEEEEEccCCCC----CcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHH
Q 014217 119 VSALFSIYGTIKDLQILRGSQQ----TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 194 (428)
Q Consensus 119 l~~~f~~~G~v~~v~i~~~~~g----~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~ 194 (428)
|...|...|.|..+.|...++. .|.|||||+|.+.++|+.|++.|+|+. ++|+. |.|+++.... ...
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldGH~--l~lk~S~~k~--~~~---- 602 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDGHK--LELKISENKP--AST---- 602 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecCce--EEEEeccCcc--ccc----
Confidence 9999999999999988766544 345999999999999999999999987 88887 6666664110 000
Q ss_pred HhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 014217 195 AQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSN 274 (428)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (428)
T Consensus 603 -------------------------------------------------------------------------------- 602 (725)
T KOG0110|consen 603 -------------------------------------------------------------------------------- 602 (725)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC
Q 014217 275 MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEF 354 (428)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~ 354 (428)
.+ ..-+....++.|+|+|||+..
T Consensus 603 ----------------------------------~g-----------------------K~~~~kk~~tKIlVRNipFeA 625 (725)
T KOG0110|consen 603 ----------------------------------VG-----------------------KKKSKKKKGTKILVRNIPFEA 625 (725)
T ss_pred ----------------------------------cc-----------------------cccccccccceeeeeccchHH
Confidence 00 000012235899999999999
Q ss_pred CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 355 GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 355 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
+..+++.+|+.||.|.+|+|++-...+.++|||||+|-++.+|.+|+.+|.+..|-||+|.++||++-
T Consensus 626 t~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 626 TKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 99999999999999999999977667888999999999999999999999999999999999999864
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.7e-28 Score=230.71 Aligned_cols=167 Identities=26% Similarity=0.573 Sum_probs=148.7
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.++|||+|||.++++++|+++|+.||+|..|+|++++ +|.++|||||+|.+.++|.+|++.|+|.. +.|+. |.|.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g~~--i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQNKT--IKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECCee--EEEEe
Confidence 4789999999999999999999999999999999876 78899999999999999999999999976 77775 78887
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+.+..
T Consensus 80 a~~~~--------------------------------------------------------------------------- 84 (352)
T TIGR01661 80 ARPSS--------------------------------------------------------------------------- 84 (352)
T ss_pred ecccc---------------------------------------------------------------------------
Confidence 74321
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
...
T Consensus 85 -----------------------------------------------------------------------------~~~ 87 (352)
T TIGR01661 85 -----------------------------------------------------------------------------DSI 87 (352)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 001
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~~ 418 (428)
..++|||+|||..+++++|+++|+.||.|..+.|+.+..++.++|||||+|.+.++|..|++.|||..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 23789999999999999999999999999999999988788999999999999999999999999999987 6788998
Q ss_pred ecCCc
Q 014217 419 KRDNK 423 (428)
Q Consensus 419 a~~~~ 423 (428)
+..+.
T Consensus 168 a~~~~ 172 (352)
T TIGR01661 168 ANNPS 172 (352)
T ss_pred CCCCC
Confidence 87654
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-27 Score=200.83 Aligned_cols=160 Identities=23% Similarity=0.522 Sum_probs=145.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
-.-|||+.|...++.|+||+.|.+||+|.+++|++|..|++++||+||.|.+.++|++||+.||+.. +++ |.|+..|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW-lG~--R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW-LGR--RTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-ecc--ceeeccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999986 554 8999999
Q ss_pred cCcccccc-----------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHH
Q 014217 94 ADGELERL-----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (428)
Q Consensus 94 ~~~~~~~~-----------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a 156 (428)
+.+..... +++||++|++..+++++|++.|+.||+|.+|+++.+ +||+||+|.+.|.|
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAA 213 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhH
Confidence 86544332 579999999999999999999999999999999988 88999999999999
Q ss_pred HHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 157 ~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
..||..+|+.. +.|+. +++.|-+..
T Consensus 214 ahAIv~mNnte-i~G~~--VkCsWGKe~ 238 (321)
T KOG0148|consen 214 AHAIVQMNNTE-IGGQL--VRCSWGKEG 238 (321)
T ss_pred HHHHHHhcCce-eCceE--EEEeccccC
Confidence 99999999988 88886 778887553
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=5.4e-26 Score=202.80 Aligned_cols=153 Identities=19% Similarity=0.364 Sum_probs=130.2
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhh-cCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
..+.+||.|||+++...+|+++|.. .|.|..|.+.-|. .|+++|||.|+|.+++.+++|++.||.-. +. +++|.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~--GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYE-VN--GRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhcc-cc--CceEEE
Confidence 3467999999999999999999965 7899999999998 59999999999999999999999997644 33 366666
Q ss_pred eccCcccccc----------------------------------------------------------------------
Q 014217 92 KYADGELERL---------------------------------------------------------------------- 101 (428)
Q Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (428)
+....+....
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 5543222111
Q ss_pred ----------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 102 ----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 102 ----------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
..++||.||.+.+....|++.|...|.|..+.+..++.|.++|++.++|.++-+|..||..|++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 1478999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccC
Q 014217 166 KHKM 169 (428)
Q Consensus 166 ~~~~ 169 (428)
.-++
T Consensus 279 ~g~~ 282 (608)
T KOG4212|consen 279 QGLF 282 (608)
T ss_pred CCCc
Confidence 5433
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=9.8e-27 Score=228.46 Aligned_cols=177 Identities=28% Similarity=0.529 Sum_probs=147.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEE
Q 014217 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (428)
Q Consensus 101 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (428)
..++|||+|||..+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+|+. |+|.. +.|+. |.|.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g~~--i~v~ 163 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLGRP--IIVQ 163 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECCee--eEEe
Confidence 36799999999999999999999999999999998876 77899999999999999999996 88876 66664 6666
Q ss_pred eCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCC
Q 014217 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (428)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
++..+....... ...
T Consensus 164 ~~~~~~~~~~~~-------~~~---------------------------------------------------------- 178 (457)
T TIGR01622 164 SSQAEKNRAAKA-------ATH---------------------------------------------------------- 178 (457)
T ss_pred ecchhhhhhhhc-------ccc----------------------------------------------------------
Confidence 553322111000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (428)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
.....
T Consensus 179 ---------------------------------------------------------------------------~~~~~ 183 (457)
T TIGR01622 179 ---------------------------------------------------------------------------QPGDI 183 (457)
T ss_pred ---------------------------------------------------------------------------cCCCC
Confidence 00000
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+..++|||+|||..+++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+..|||..+.|+.|+|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 12489999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred cC
Q 014217 420 RD 421 (428)
Q Consensus 420 ~~ 421 (428)
+.
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 74
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.1e-27 Score=215.62 Aligned_cols=171 Identities=28% Similarity=0.423 Sum_probs=142.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
.-+|.|+||||.+...+|+.+|+.||.|.+|.|.+.+. |+.+|||||+|....+|..||+.+|+..+ .| +++-+.|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i-~g--R~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKI-DG--RPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCcee-cC--ceeEEee
Confidence 67899999999999999999999999999999998776 55559999999999999999999999865 33 7888888
Q ss_pred cCcccc--c----------------------c------------------------------------------------
Q 014217 94 ADGELE--R----------------------L------------------------------------------------ 101 (428)
Q Consensus 94 ~~~~~~--~----------------------~------------------------------------------------ 101 (428)
+..... . .
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 621100 0 0
Q ss_pred -------------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHH
Q 014217 102 -------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALE 161 (428)
Q Consensus 102 -------------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~ 161 (428)
..+|||+|||+++++++|.+.|+.||.|..+.++.++ ++.++|.|||.|.+..+|..||.
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 1489999999999999999999999999998887776 88999999999999999999998
Q ss_pred HHc-----CCccCCCCcceEEEEeCCCHHHHHHH
Q 014217 162 AIN-----GKHKMEGSSVPLVVKWADTEKERQAR 190 (428)
Q Consensus 162 ~l~-----~~~~~~g~~~~l~v~~a~~~~~~~~~ 190 (428)
..+ |..+++|+- |.|..|....+-...
T Consensus 353 ~Aspa~e~g~~ll~GR~--Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRL--LKVTLAVTRKEAADM 384 (678)
T ss_pred hcCccCCCceEEEeccE--EeeeeccchHHHHHH
Confidence 872 224567775 788888776654443
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.3e-27 Score=195.26 Aligned_cols=171 Identities=26% Similarity=0.556 Sum_probs=153.7
Q ss_pred cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
...+.|+|.-||-++|+|||+.+|...|+|+++++++++ +|++-||+||.|-+++||++|++.|||.. + +...|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr-L--Q~KTIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR-L--QNKTIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee-e--ccceEEE
Confidence 335789999999999999999999999999999999998 99999999999999999999999999976 3 3345999
Q ss_pred EeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
.||.+.....
T Consensus 116 SyARPSs~~I---------------------------------------------------------------------- 125 (360)
T KOG0145|consen 116 SYARPSSDSI---------------------------------------------------------------------- 125 (360)
T ss_pred EeccCChhhh----------------------------------------------------------------------
Confidence 9997653221
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
T Consensus 126 -------------------------------------------------------------------------------- 125 (360)
T KOG0145|consen 126 -------------------------------------------------------------------------------- 125 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v 416 (428)
...+|||.+||..+|+.+|+++|++||.|+-.+|..|.-+|.++|.|||+|...++|..|+..|||..-.| .+|.|
T Consensus 126 --k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItV 203 (360)
T KOG0145|consen 126 --KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITV 203 (360)
T ss_pred --cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999998876 68999
Q ss_pred EEecCCcCC
Q 014217 417 QLKRDNKQN 425 (428)
Q Consensus 417 ~~a~~~~~~ 425 (428)
+||....+.
T Consensus 204 KFannPsq~ 212 (360)
T KOG0145|consen 204 KFANNPSQK 212 (360)
T ss_pred EecCCcccc
Confidence 999877554
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=196.89 Aligned_cols=308 Identities=21% Similarity=0.309 Sum_probs=198.1
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
..++.|.+||||++++|+||.+++.+||.|.++.+.+.+. .||++|.++++|..-+..+.... -.-+++++-+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~-p~lr~~~~yi 98 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVT-PVLRGQPIYI 98 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccC-ccccCcceee
Confidence 3788999999999999999999999999999998877654 89999999999998544332210 0001123322
Q ss_pred eccCcc--------------------------------------cccc---cceEEEecCCCCCCHHHHHHhccccCCeE
Q 014217 92 KYADGE--------------------------------------LERL---EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130 (428)
Q Consensus 92 ~~~~~~--------------------------------------~~~~---~~~v~v~nlp~~~t~~~l~~~f~~~G~v~ 130 (428)
.++.-. .... --+++|.++-+.++.+-|..+|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 222100 0000 12467889999999999999999999999
Q ss_pred EEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCC
Q 014217 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHP 210 (428)
Q Consensus 131 ~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (428)
+|.-+....| =.|+|+|.+.+.|..|...|+|..+.+|+ +.++|++.............+.+
T Consensus 179 KIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Sklt~LnvKynndkSR-------------- 240 (492)
T KOG1190|consen 179 KIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKLTDLNVKYNNDKSR-------------- 240 (492)
T ss_pred EEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhcccceeeccccccc--------------
Confidence 8877765433 27999999999999999999999988888 56788877553211111000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC
Q 014217 211 SLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS 290 (428)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (428)
.+..+.++.+ ..+..+.++..... .
T Consensus 241 --------DyTnp~LP~g-----------------d~~p~l~~~~~aa~------~------------------------ 265 (492)
T KOG1190|consen 241 --------DYTNPDLPVG-----------------DGQPSLDQLMAAAF------G------------------------ 265 (492)
T ss_pred --------cccCCCCCCC-----------------ccccccchhhhccc------c------------------------
Confidence 0011111100 00000000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC-CCCCHHHHHHHhhcCCCe
Q 014217 291 GYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIP-QEFGDQELGNAFQAFGRV 369 (428)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i 369 (428)
..++..| .+...|.. .... ........... .+++|.|.||. +.||.+-|..+|+.||.|
T Consensus 266 ~~~~~~g--~p~aip~~------------~~~a-----~~a~~~~~~~~-~n~vllvsnln~~~VT~d~LftlFgvYGdV 325 (492)
T KOG1190|consen 266 SVPAVHG--APLAIPSG------------AAGA-----NAADGKIESPS-ANVVLLVSNLNEEAVTPDVLFTLFGVYGDV 325 (492)
T ss_pred ccccccC--CcccCCcc------------chhh-----cccccccccCC-CceEEEEecCchhccchhHHHHHHhhhcce
Confidence 0000000 00000000 0000 00000000000 25899999995 578999999999999999
Q ss_pred EEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCCcC
Q 014217 370 LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQ 424 (428)
Q Consensus 370 ~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~~~ 424 (428)
.+|+|...+. --|+|+|.+...|+-|+..|+|..+.|++|+|.++|...-
T Consensus 326 qRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 326 QRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 9999998763 3699999999999999999999999999999999987654
No 32
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=3e-24 Score=195.43 Aligned_cols=163 Identities=17% Similarity=0.286 Sum_probs=127.1
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+......|.+++|||++|++||++||+.++ |+++.+.+. +|+++|-|||+|.+++++++||+. ++..+.. +-
T Consensus 5 ~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~--RY 77 (510)
T KOG4211|consen 5 NEGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK--DRESMGH--RY 77 (510)
T ss_pred cCCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh--hHHHhCC--ce
Confidence 3667778899999999999999999999996 888766665 699999999999999999999987 4333333 44
Q ss_pred ceeeccCcc------------cccccceEEEecCCCCCCHHHHHHhccccCCeEE-EEEccCCCCCcccEEEEEeCCHHH
Q 014217 89 LQVKYADGE------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQ 155 (428)
Q Consensus 89 ~~~~~~~~~------------~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~g~~~g~afV~f~~~e~ 155 (428)
|.|-.+... ....+-.|.|++||..||++||.++|+..-.|.. +.++.+..+++.|.|||+|++.++
T Consensus 78 IEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 78 IEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred EEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 444333111 1123568999999999999999999999887766 667777888999999999999999
Q ss_pred HHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 156 ALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 156 a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
|+.|+...... +..+- |.|-.+.
T Consensus 158 ae~Al~rhre~--iGhRY--IEvF~Ss 180 (510)
T KOG4211|consen 158 AEIALGRHREN--IGHRY--IEVFRSS 180 (510)
T ss_pred HHHHHHHHHHh--hccce--EEeehhH
Confidence 99999875542 44443 5554443
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=2.6e-25 Score=215.73 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCccee----eccCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCC
Q 014217 65 SRQEADKAVNACHNKKTLPGASSPLQV----KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140 (428)
Q Consensus 65 ~~~~a~~al~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g 140 (428)
-.++|.+||..+++..+.....+..-- .|. .......++|||+|||.++++++|+++|+.||.|.+++|+++.+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~-~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWS-GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCccc-CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCC
Confidence 367888888877765442221111111 121 122334689999999999999999999999999999999999999
Q ss_pred CcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCC
Q 014217 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGY 220 (428)
Q Consensus 141 ~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (428)
.++|||||+|.+.++|++|++.|++..+..++. +.|..+
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~--l~V~~S--------------------------------------- 135 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL--LGVCIS--------------------------------------- 135 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCcc--cccccc---------------------------------------
Confidence 999999999999999999999999987544553 333211
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 014217 221 APPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQY 300 (428)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (428)
T Consensus 136 -------------------------------------------------------------------------------- 135 (578)
T TIGR01648 136 -------------------------------------------------------------------------------- 135 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEE-eeC
Q 014217 301 PMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVF-VDK 378 (428)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~-~~~ 378 (428)
...++|||+|||.++++++|+++|+.++. +.++.+. ...
T Consensus 136 ---------------------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~ 176 (578)
T TIGR01648 136 ---------------------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAA 176 (578)
T ss_pred ---------------------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccc
Confidence 02389999999999999999999999974 5555443 223
Q ss_pred CCCCeeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEEEEEecCCcC
Q 014217 379 ATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKVQLKRDNKQ 424 (428)
Q Consensus 379 ~~~~~~g~afV~F~~~e~A~~A~~~l~g--~~l~g~~i~v~~a~~~~~ 424 (428)
..++++|||||+|.++++|..|++.|+. ..+.|+.|.|+|+..+..
T Consensus 177 ~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 177 DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc
Confidence 3567899999999999999999998864 357899999999987653
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1e-23 Score=189.26 Aligned_cols=169 Identities=24% Similarity=0.406 Sum_probs=143.9
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEEEeCCC-CCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKT-TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~-~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.+.|+|||+|||.++++++|++-+++.++ |.+|.|.++.. ..+++|||||+|.+...|..|.+.|-..+ +.-++..+
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~-~klwgn~~ 240 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK-IKLWGNAI 240 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc-eeecCCcc
Confidence 46799999999999999999999999984 77788877553 36799999999999999999988874433 23355888
Q ss_pred eeeccCcccccc------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHH
Q 014217 90 QVKYADGELERL------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (428)
Q Consensus 90 ~~~~~~~~~~~~------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l 163 (428)
.|.|+.++.+.. -..|||+||+.++|+|.|+++|+.||.|++|+.++| ||||.|.+.++|.+|++.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHh
Confidence 999998766654 357999999999999999999999999999999866 9999999999999999999
Q ss_pred cCCccCCCCcceEEEEeCCCHHHHHHHH
Q 014217 164 NGKHKMEGSSVPLVVKWADTEKERQARR 191 (428)
Q Consensus 164 ~~~~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (428)
|+.. ++|.. |.|.+|++..+....+
T Consensus 314 ngke-ldG~~--iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 314 NGKE-LDGSP--IEVTLAKPVDKKKKER 338 (506)
T ss_pred cCce-ecCce--EEEEecCChhhhccch
Confidence 9988 88886 7788888776555444
No 35
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.93 E-value=8.8e-24 Score=185.20 Aligned_cols=330 Identities=19% Similarity=0.268 Sum_probs=213.4
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
+....+.+..|.|++|-..++|.||.+.++.||+|..+..+..+. .|.|+|++.+.|+.++...-...+.-+..
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCc
Confidence 455677889999999999999999999999999998888777664 89999999999999998765544433322
Q ss_pred Ccc-eee------ccCcccccccceEEEecCC--CCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHH
Q 014217 87 SPL-QVK------YADGELERLEHKLFIGMLP--KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQAL 157 (428)
Q Consensus 87 ~~~-~~~------~~~~~~~~~~~~v~v~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~ 157 (428)
..+ ..+ ....+....+..|.++-|. +.+|.+-|+++....|.|.+|.|++. +| -.|.|+|++.+.|+
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQ 173 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHH
Confidence 222 111 1122222224556666554 67899999999999999999999876 33 38999999999999
Q ss_pred HHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 014217 158 AALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL 237 (428)
Q Consensus 158 ~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (428)
+|...|||..++-|+ ..|+|++|+++.....+. +...++-..+...+....+.. ++....++..-++
T Consensus 174 rAk~alNGADIYsGC-CTLKIeyAkP~rlnV~kn---------d~DtwDyTlp~~~~~~~~g~~-~~~r~~~p~~~~~-- 240 (494)
T KOG1456|consen 174 RAKAALNGADIYSGC-CTLKIEYAKPTRLNVQKN---------DKDTWDYTLPDLRGPYDPGRN-HYDRQRQPAPLGY-- 240 (494)
T ss_pred HHHhhcccccccccc-eeEEEEecCcceeeeeec---------CCccccccCCCCCCCCCCCCC-CCccccCCCccCC--
Confidence 999999999988887 579999998875332221 111111111111111000000 0000000000000
Q ss_pred cccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 238 MQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNS 317 (428)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
.+..+..+..++.+.-+. +.. ...|+ . ..
T Consensus 241 --------------------------------------~pss~~G~h~~y~sg~~~---~p~--~~~P~-r-------~~ 269 (494)
T KOG1456|consen 241 --------------------------------------HPSSRGGGHSGYYSGDRH---GPP--HPPPS-R-------YR 269 (494)
T ss_pred --------------------------------------ChhhcCCCCCCCcccccC---CCC--CCCCC-C-------Cc
Confidence 011111111111100000 000 00000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHH
Q 014217 318 PGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 396 (428)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~ 396 (428)
.+..++ ....++....++++++|.+|.. .++.+.|.++|+.||.|.+|++++.+ .|.|+|++.+...
T Consensus 270 ~~~~~~-------~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~a 337 (494)
T KOG1456|consen 270 DGYRDG-------RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYA 337 (494)
T ss_pred cccccC-------CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHH
Confidence 000000 0011112345779999999985 57899999999999999999999887 4789999999999
Q ss_pred HHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 397 AQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 397 A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
.++|+..||+..+.|.+|.|.+++..
T Consensus 338 ver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 338 VERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred HHHHHHHhccCccccceEEEeecccc
Confidence 99999999999999999999998754
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=8.7e-24 Score=210.57 Aligned_cols=83 Identities=29% Similarity=0.518 Sum_probs=78.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
...+|||+|||..+++++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=4.1e-25 Score=175.16 Aligned_cols=172 Identities=30% Similarity=0.476 Sum_probs=150.4
Q ss_pred cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
....+|||+||+..++++.|+++|-..|+|.+++++++. +...+|||||+|.++|+|+=|++-||... +.|+ +|+|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYgr--pIrv 83 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYGR--PIRV 83 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcCc--eeEE
Confidence 346799999999999999999999999999999999987 55678999999999999999999999766 5555 4888
Q ss_pred EeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
..+.....
T Consensus 84 ~kas~~~~------------------------------------------------------------------------ 91 (203)
T KOG0131|consen 84 NKASAHQK------------------------------------------------------------------------ 91 (203)
T ss_pred Eecccccc------------------------------------------------------------------------
Confidence 77742100
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
.
T Consensus 92 -------------------------------------------------------------------------------n 92 (203)
T KOG0131|consen 92 -------------------------------------------------------------------------------N 92 (203)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEE-EEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++||+||.+.+++..|.+.|+.||.+.+. +|+++..+|.++|||||.|++.|.+.+|+..+||..+..++|.|+
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 1133789999999999999999999999998775 899999899999999999999999999999999999999999999
Q ss_pred EecCCcCC
Q 014217 418 LKRDNKQN 425 (428)
Q Consensus 418 ~a~~~~~~ 425 (428)
++..+...
T Consensus 173 ya~k~~~k 180 (203)
T KOG0131|consen 173 YAFKKDTK 180 (203)
T ss_pred EEEecCCC
Confidence 99877654
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=165.57 Aligned_cols=169 Identities=25% Similarity=0.427 Sum_probs=143.0
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
+.....+|||+||+..++++-|.++|-+.|+|.++++.+|+.+...+||||++|.++++|+.|++.||.-+++ | ++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY-g--rpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY-G--RPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc-C--cee
Confidence 4456789999999999999999999999999999999999999999999999999999999999999965543 3 778
Q ss_pred eeeccCc--ccccccceEEEecCCCCCCHHHHHHhccccCCeEE-EEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 90 QVKYADG--ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 90 ~~~~~~~--~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
++..+.. .......++||+||.+++++..|.+.|+.||.+.. =+++++. +|.++|++||-|.+.|.+.+|+..++|
T Consensus 82 rv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 82 RVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred EEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 7776652 22223568999999999999999999999998865 3666666 578899999999999999999999999
Q ss_pred CccCCCCcceEEEEeCCCH
Q 014217 166 KHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (428)
.. +..+. +.|.++..+
T Consensus 162 q~-l~nr~--itv~ya~k~ 177 (203)
T KOG0131|consen 162 QY-LCNRP--ITVSYAFKK 177 (203)
T ss_pred ch-hcCCc--eEEEEEEec
Confidence 65 55554 777777544
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=191.62 Aligned_cols=206 Identities=20% Similarity=0.320 Sum_probs=138.0
Q ss_pred ceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
+.++++|||..+..++|...|..||.|..+.+++. | -.++|.|-++.+|.+|+..|....+ ...++++.|+.
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~--G---~~aiv~fl~p~eAr~Afrklaysr~---k~~plyle~aP 457 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG--G---TGAIVEFLNPLEARKAFRKLAYSRF---KSAPLYLEWAP 457 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceeecCcc--c---ceeeeeecCccchHHHHHHhchhhh---ccCccccccCh
Confidence 57999999999999999999999999999966632 2 2699999999999999999988653 33458888885
Q ss_pred CHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCC
Q 014217 183 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 262 (428)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (428)
........ . ....++-....
T Consensus 458 ~dvf~~~p-------------k-----------------------------a~~~~~e~~~~------------------ 477 (725)
T KOG0110|consen 458 EDVFTEDP-------------K-----------------------------ADDLSAESRSK------------------ 477 (725)
T ss_pred hhhccCCc-------------c-----------------------------ccccccccccc------------------
Confidence 54211000 0 00000000000
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCC
Q 014217 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSS----SGGT 338 (428)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 338 (428)
+ -........... .+........... ....
T Consensus 478 ------------------------~-------ee~~~Er~s~~d---------------~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 478 ------------------------M-------EENPSERVSAED---------------GQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred ------------------------c-------ccCcceeccccc---------------ccccccCCccccccchhhhhc
Confidence 0 000000000000 0000001100001 0111
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCC---CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
....+.|||+||++++|.++|..+|+.+|.|.++.|.+.+. .-.+.|||||+|.++++|+.|++.|+|..|+|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 22234499999999999999999999999999999986652 124679999999999999999999999999999999
Q ss_pred EEEecCC
Q 014217 416 VQLKRDN 422 (428)
Q Consensus 416 v~~a~~~ 422 (428)
|+++..+
T Consensus 592 lk~S~~k 598 (725)
T KOG0110|consen 592 LKISENK 598 (725)
T ss_pred EEeccCc
Confidence 9999843
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=8.5e-23 Score=171.34 Aligned_cols=174 Identities=32% Similarity=0.539 Sum_probs=154.5
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
+.+.+..+.++|||+-|...-.|||++.+|..||.|++|.+.+..+ |.++|||||.|.+..+|..||..||+...+.|.
T Consensus 11 dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 11 DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 3455666899999999999999999999999999999999999884 889999999999999999999999999999999
Q ss_pred CCcceeeccCcccccc----------------------------------------------------------------
Q 014217 86 SSPLQVKYADGELERL---------------------------------------------------------------- 101 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 101 (428)
+..+.+++++.++++.
T Consensus 90 SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~ 169 (371)
T KOG0146|consen 90 SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAAL 169 (371)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHH
Confidence 9999999998777663
Q ss_pred --------------------------------------------------------------------------------
Q 014217 102 -------------------------------------------------------------------------------- 101 (428)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (428)
T Consensus 170 ~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g 249 (371)
T KOG0146|consen 170 NANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAG 249 (371)
T ss_pred hhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhh
Confidence
Q ss_pred -----------------------------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccE
Q 014217 102 -----------------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGC 145 (428)
Q Consensus 102 -----------------------------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~ 145 (428)
.++|||..||-+..+.||.+.|-.||.|.+.+++.|. ++++++|
T Consensus 250 ~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 250 VQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccce
Confidence 0689999999999999999999999999999998776 8899999
Q ss_pred EEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCC
Q 014217 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (428)
Q Consensus 146 afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (428)
+||.|+++.+|+.||..+||.. +.=+. ++|.+.++
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQ-IGMKR--LKVQLKRP 364 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQ-IGMKR--LKVQLKRP 364 (371)
T ss_pred eeEecCCchhHHHHHHHhcchh-hhhhh--hhhhhcCc
Confidence 9999999999999999999977 43333 55544443
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=3.8e-22 Score=169.63 Aligned_cols=152 Identities=28% Similarity=0.549 Sum_probs=135.0
Q ss_pred eEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCC
Q 014217 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (428)
Q Consensus 104 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (428)
.+||+|||.++++.+|+.+|++||.|.++.|+.+ ||||..++...+..||+.|++.. ++|.. |.|+-++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYt-Lhg~n--InVeaSks 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYT-LHGVN--INVEASKS 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccce-ecceE--EEEEeccc
Confidence 6899999999999999999999999999999954 99999999999999999999987 66654 66655543
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCC
Q 014217 184 EKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA 263 (428)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (428)
+
T Consensus 74 K------------------------------------------------------------------------------- 74 (346)
T KOG0109|consen 74 K------------------------------------------------------------------------------- 74 (346)
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 014217 264 MRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGA 343 (428)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (428)
....+
T Consensus 75 ---------------------------------------------------------------------------sk~st 79 (346)
T KOG0109|consen 75 ---------------------------------------------------------------------------SKAST 79 (346)
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 11448
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCCc
Q 014217 344 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 423 (428)
Q Consensus 344 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~~ 423 (428)
+|+|+||.+..+.++|+..|++||+|+.|.|+++ |+||.|.-.++|..|++.|++++|.|++++|+++-++-
T Consensus 80 kl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 80 KLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 9999999999999999999999999999999755 89999999999999999999999999999999998775
Q ss_pred CCCC
Q 014217 424 QNKP 427 (428)
Q Consensus 424 ~~~~ 427 (428)
..+|
T Consensus 152 rtap 155 (346)
T KOG0109|consen 152 RTAP 155 (346)
T ss_pred ccCC
Confidence 5444
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=166.53 Aligned_cols=278 Identities=20% Similarity=0.303 Sum_probs=197.4
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
..--.+.|+|+-+.++-+-|..+|++||.|..|.-+.... .-.|.|+|.+.+.|..|...|.|+.+..| ...+++
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrI 222 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRI 222 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCc-eeEEEe
Confidence 3445788999999999999999999999998876655432 23799999999999999999999887665 233333
Q ss_pred ecc----------Ccccccc------------------------------------------------------cceEEE
Q 014217 92 KYA----------DGELERL------------------------------------------------------EHKLFI 107 (428)
Q Consensus 92 ~~~----------~~~~~~~------------------------------------------------------~~~v~v 107 (428)
.++ +...++. ...|.|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 332 1110000 246788
Q ss_pred ecCC-CCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHH
Q 014217 108 GMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186 (428)
Q Consensus 108 ~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~ 186 (428)
.||. ..+|.+.|..+|..||+|.+|+|+.++ +-.|+|++.+...|..|++.|+|.. +.|+. |+|.+.+...-
T Consensus 303 snln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~-l~gk~--lrvt~SKH~~v 375 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHK-LYGKK--LRVTLSKHTNV 375 (492)
T ss_pred ecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcce-ecCce--EEEeeccCccc
Confidence 8886 458999999999999999999998875 4589999999999999999999987 66654 88888876521
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCC
Q 014217 187 RQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 266 (428)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (428)
......++.+ ++.-+
T Consensus 376 qlp~egq~d~----------------------glT~d------------------------------------------- 390 (492)
T KOG1190|consen 376 QLPREGQEDQ----------------------GLTKD------------------------------------------- 390 (492)
T ss_pred cCCCCCCccc----------------------ccccc-------------------------------------------
Confidence 1111000000 00000
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 014217 267 ASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLF 346 (428)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 346 (428)
+..++...+. ... ....-...++..+++
T Consensus 391 --------------------y~~spLhrfk--------------kpg------------------sKN~~ni~PpsatlH 418 (492)
T KOG1190|consen 391 --------------------YGNSPLHRFK--------------KPG------------------SKNYQNIFPPSATLH 418 (492)
T ss_pred --------------------CCCCchhhcc--------------Ccc------------------cccccccCCchhhee
Confidence 0000000000 000 000000123568999
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC-eEEEEEEecCC
Q 014217 347 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KKLKVQLKRDN 422 (428)
Q Consensus 347 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g-~~i~v~~a~~~ 422 (428)
+.|+|.++++|+|+++|..-|...+.... .++.+-+|++++.+.|+|..|+..+|.+.+++ ..|||+|+++.
T Consensus 419 lsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 419 LSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred eccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999987766543 23345699999999999999999999999975 59999999874
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=165.92 Aligned_cols=147 Identities=24% Similarity=0.512 Sum_probs=131.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
.+|||+|||..+++.+|+.+|.+||+|.+|.|+++ |+||-.++...|+.||.-||+-++ . +..|.|..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL-h--g~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL-H--GVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee-c--ceEEEEEec
Confidence 47999999999999999999999999999999987 899999999999999999998764 3 478888777
Q ss_pred CcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Q 014217 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (428)
Q Consensus 95 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~ 174 (428)
+.. ...+.+++|+|+.+.++..||+..|++||+|.++.|.++ |+||.|+..++|..|++.|++.. |.|+.
T Consensus 72 ksK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~-~~gk~- 141 (346)
T KOG0109|consen 72 KSK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTE-FQGKR- 141 (346)
T ss_pred ccc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccc-cccce-
Confidence 644 556789999999999999999999999999999999955 99999999999999999999988 88886
Q ss_pred eEEEEeCCC
Q 014217 175 PLVVKWADT 183 (428)
Q Consensus 175 ~l~v~~a~~ 183 (428)
++|.+..+
T Consensus 142 -m~vq~sts 149 (346)
T KOG0109|consen 142 -MHVQLSTS 149 (346)
T ss_pred -eeeeeecc
Confidence 66665543
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.5e-20 Score=164.58 Aligned_cols=174 Identities=24% Similarity=0.428 Sum_probs=147.5
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
-++|||+.+.+++.++.|+..|..||+|.++.+.-++ +++.+|||||+|+-+|.|..|++.+||.. +.|+. |+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m-lGGRN--iKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGRN--IKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc-ccCcc--ccccC
Confidence 3789999999999999999999999999999998776 88899999999999999999999999976 88887 66665
Q ss_pred CCCHHHHHHHH--HHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 181 ADTEKERQARR--AQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 181 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
....-.-+... .++..
T Consensus 190 PsNmpQAQpiID~vqeeA-------------------------------------------------------------- 207 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEA-------------------------------------------------------------- 207 (544)
T ss_pred CCCCcccchHHHHHHHHH--------------------------------------------------------------
Confidence 43321111110 11110
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
T Consensus 208 -------------------------------------------------------------------------------- 207 (544)
T KOG0124|consen 208 -------------------------------------------------------------------------------- 207 (544)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..-..|||.-+-.+.+++||+..|+.||+|.+|.+.+++..+.++|||||+|.+..+-..|+..||-+-|+|.-|+|-.
T Consensus 208 -k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 208 -KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred -HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 0227899999999999999999999999999999999998889999999999999999999999999999999999865
Q ss_pred ecC
Q 014217 419 KRD 421 (428)
Q Consensus 419 a~~ 421 (428)
.-.
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 443
No 45
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.82 E-value=8e-19 Score=154.77 Aligned_cols=278 Identities=16% Similarity=0.203 Sum_probs=186.8
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+...|..++|||..+..+|-.||.--......+.+.....|+..|.+.|+|.+++.-.-|+++. +.++.+ +.+
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRh--khh~g~--ryi 131 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRH--KHHMGT--RYI 131 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhh--hhhccC--Cce
Confidence 3445567788999999999999999986544444455555556888899999999999999999883 333443 444
Q ss_pred eeeccCccc-----------------ccccceEEEecCCCCCCHHHHHHhcccc----CCeEEEEEccCCCCCcccEEEE
Q 014217 90 QVKYADGEL-----------------ERLEHKLFIGMLPKNVSEAEVSALFSIY----GTIKDLQILRGSQQTSKGCAFL 148 (428)
Q Consensus 90 ~~~~~~~~~-----------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~g~~~g~afV 148 (428)
.+-.+..+. +...-.|.+++||+++++.++.++|... |..+.|.+++..+|+..|-|||
T Consensus 132 evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 333221111 0112457888999999999999999632 4667888888889999999999
Q ss_pred EeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 149 KYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYG 228 (428)
Q Consensus 149 ~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (428)
.|..+++|..|+.+..+. +.-+.+.+ |.+...+.++....... . +.+.+. +. +.
T Consensus 212 lfa~ee~aq~aL~khrq~--iGqRYIEl---FRSTaaEvqqvlnr~~s-----~-------pLi~~~-~s----p~---- 265 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQN--IGQRYIEL---FRSTAAEVQQVLNREVS-----E-------PLIPGL-TS----PL---- 265 (508)
T ss_pred EecCHHHHHHHHHHHHHH--HhHHHHHH---HHHhHHHHHHHHHhhcc-----c-------cccCCC-CC----CC----
Confidence 999999999999875542 32222111 11122222111100000 0 000000 00 00
Q ss_pred CCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 229 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGM 308 (428)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (428)
. +..
T Consensus 266 -----------------------------------------------~----------------------------p~~- 269 (508)
T KOG1365|consen 266 -----------------------------------------------L----------------------------PGG- 269 (508)
T ss_pred -----------------------------------------------C----------------------------CCC-
Confidence 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCe-EE--EEEEeeCCCCCeee
Q 014217 309 LGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRV-LS--AKVFVDKATGVSKC 385 (428)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~--v~i~~~~~~~~~~g 385 (428)
+...+ .......+|.++|||++.+.|||.+||..|..- .. |++..+ ..|++.|
T Consensus 270 --------p~~~~---------------p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSG 325 (508)
T KOG1365|consen 270 --------PARLV---------------PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSG 325 (508)
T ss_pred --------ccccC---------------CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcCh
Confidence 00000 011135899999999999999999999998843 33 788777 4899999
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 386 FGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 386 ~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
.|||+|.+.|+|.+|...-|.+..++|-|.|-
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 99999999999999999999888888888875
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=7e-20 Score=164.06 Aligned_cols=168 Identities=26% Similarity=0.440 Sum_probs=138.2
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
+.++|||++|+|++++|.|++.|+.||.|.+|.+++|+.+++++||+||+|.+.+.+.++|..-++ .+.+ +.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h--~~dg--r~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH--KLDG--RSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc--ccCC--ccccce
Confidence 889999999999999999999999999999999999999999999999999999999999877433 4666 444444
Q ss_pred ccCccccc--c-----cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHc
Q 014217 93 YADGELER--L-----EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 164 (428)
Q Consensus 93 ~~~~~~~~--~-----~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~ 164 (428)
.+.+.... . ...|||++||.+++++++++.|..||.|..+.++.+. ..+.+||+||.|.+++++..++..
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-- 158 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-- 158 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc--
Confidence 44322221 1 3489999999999999999999999999888877666 668899999999999999998743
Q ss_pred CCccCCCCcceEEEEeCCCHHHHH
Q 014217 165 GKHKMEGSSVPLVVKWADTEKERQ 188 (428)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~~~~~ 188 (428)
..+.++++. +.|+.|.++....
T Consensus 159 ~f~~~~gk~--vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 159 KFHDFNGKK--VEVKRAIPKEVMQ 180 (311)
T ss_pred ceeeecCce--eeEeeccchhhcc
Confidence 233366665 7888887765443
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=7.5e-19 Score=142.21 Aligned_cols=86 Identities=36% Similarity=0.583 Sum_probs=81.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...++|||+|||.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|+.|+..||+..|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 014217 420 RDNKQN 425 (428)
Q Consensus 420 ~~~~~~ 425 (428)
+.++..
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 877653
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=2.9e-19 Score=165.32 Aligned_cols=178 Identities=27% Similarity=0.541 Sum_probs=144.0
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.+++|+.-++...++-+|.++|+.+|.|..|.++.+. .+.++|.|||+|.+.++...|| .|.|.. +.| +||.|+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqr-llg--~pv~vq~ 254 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR-LLG--VPVIVQL 254 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCc-ccC--ceeEecc
Confidence 4678888888889999999999999999999998887 7789999999999999999999 689877 444 3577766
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
...++...+. .... ..+
T Consensus 255 sEaeknr~a~-------~s~a----------~~~---------------------------------------------- 271 (549)
T KOG0147|consen 255 SEAEKNRAAN-------ASPA----------LQG---------------------------------------------- 271 (549)
T ss_pred cHHHHHHHHh-------cccc----------ccc----------------------------------------------
Confidence 6544433111 0000 000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
.....
T Consensus 272 ---------------------------------------------------------------------------k~~~~ 276 (549)
T KOG0147|consen 272 ---------------------------------------------------------------------------KGFTG 276 (549)
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00011
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+...|||+||-+++++++|+.+|..||.|..|.+.+|.++|+++|||||+|.+.++|++|+..|||..|-|+.|+|..-.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 22339999999999999999999999999999999998899999999999999999999999999999999999998654
Q ss_pred C
Q 014217 421 D 421 (428)
Q Consensus 421 ~ 421 (428)
.
T Consensus 357 ~ 357 (549)
T KOG0147|consen 357 E 357 (549)
T ss_pred e
Confidence 4
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=8.7e-19 Score=164.52 Aligned_cols=268 Identities=22% Similarity=0.368 Sum_probs=186.2
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhc-----------C-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEF-----------A-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----------g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
-....+.++|+++|+.++++....||..- | .+..+.+-..+ .|||++|.+.++|..++...
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~- 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALD- 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhccc-
Confidence 34456889999999999999999999864 3 35555554444 49999999999999996542
Q ss_pred CCCCCCCCCCcceeecc------------------------CcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEE
Q 014217 78 NKKTLPGASSPLQVKYA------------------------DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133 (428)
Q Consensus 78 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 133 (428)
+ .++.| +.+++... ..........++|++||...++.+++++...||++....
T Consensus 244 ~-~~f~g--~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~ 320 (500)
T KOG0120|consen 244 G-IIFEG--RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR 320 (500)
T ss_pred c-hhhCC--CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhe
Confidence 2 22322 33332221 111112246799999999999999999999999999988
Q ss_pred EccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 014217 134 ILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSL 212 (428)
Q Consensus 134 i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (428)
+..+. +|.++||||.+|-+......|+..|||.. +.+.. +.|..|.........- .
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~-lgd~~--lvvq~A~~g~~~~~~~--------------------~ 377 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ-LGDKK--LVVQRAIVGASNANVN--------------------F 377 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhh-hcCce--eEeehhhccchhcccc--------------------C
Confidence 87776 68999999999999999999999999987 55554 7777775542211110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCC
Q 014217 213 FGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGY 292 (428)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (428)
. +...
T Consensus 378 ~--~~~~------------------------------------------------------------------------- 382 (500)
T KOG0120|consen 378 N--ISQS------------------------------------------------------------------------- 382 (500)
T ss_pred C--cccc-------------------------------------------------------------------------
Confidence 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC--CCCC--------CHHHHHHH
Q 014217 293 PAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPGANLFIYHI--PQEF--------GDQELGNA 362 (428)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL--p~~~--------t~~~L~~~ 362 (428)
...++. .. .......+..+|.+.|+ |.+. -.|+++.-
T Consensus 383 -~~~~i~-------------~~-------------------~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~e 429 (500)
T KOG0120|consen 383 -QVPGIP-------------LL-------------------MTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTE 429 (500)
T ss_pred -ccccch-------------hh-------------------hcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHH
Confidence 000000 00 00001113355666665 2211 24688889
Q ss_pred hhcCCCeEEEEEEee-C--CCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 363 FQAFGRVLSAKVFVD-K--ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 363 F~~~G~i~~v~i~~~-~--~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
|++||.|.+|.|.++ . ...-..|..||+|++.+++++|+.+|+|+.|.||.|...|
T Consensus 430 c~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 430 CAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred hcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 999999999999877 2 2334677889999999999999999999999999999875
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=1.8e-17 Score=144.80 Aligned_cols=190 Identities=19% Similarity=0.330 Sum_probs=140.8
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeE--------EEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIK--------DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (428)
+..|||+|||.++|.+++.++|+++|.|. .|+++++.+|..+|-|.|.|-..|++..|++.|++.. +.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE-LRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-ccCcE
Confidence 46799999999999999999999999885 6889999999999999999999999999999999987 77776
Q ss_pred ceEEEEeCCCHHHH----------HHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 014217 174 VPLVVKWADTEKER----------QARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLP 243 (428)
Q Consensus 174 ~~l~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (428)
|+|..|.-+... ......+.+.++..+-.+...
T Consensus 213 --~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd----------------------------------- 255 (382)
T KOG1548|consen 213 --LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPD----------------------------------- 255 (382)
T ss_pred --EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCC-----------------------------------
Confidence 788877432210 000011111111000000000
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 244 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323 (428)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (428)
T Consensus 256 -------------------------------------------------------------------------------- 255 (382)
T KOG1548|consen 256 -------------------------------------------------------------------------------- 255 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCC--CC--CCC-------HHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEec
Q 014217 324 AVANSNPSTSSSGGTGPPGANLFIYHI--PQ--EFG-------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYE 392 (428)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~V~nL--p~--~~t-------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~ 392 (428)
....+.....++|.++|| |. ..+ +++|++-|+.||.|.+|.|.- ..+.|.+-|.|.
T Consensus 256 ---------~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~ 322 (382)
T KOG1548|consen 256 ---------RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFR 322 (382)
T ss_pred ---------ccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeC
Confidence 000112235599999999 22 222 678889999999999998863 335689999999
Q ss_pred CHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 393 SPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 393 ~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
+.++|..|++.|+|++|+||.|..++...+
T Consensus 323 n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 323 NNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 999999999999999999999999887654
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.76 E-value=1.1e-15 Score=134.81 Aligned_cols=276 Identities=20% Similarity=0.264 Sum_probs=190.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccCc
Q 014217 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 96 (428)
Q Consensus 17 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~ 96 (428)
+-|-|-=+.+|-+-|..++...|.|..|.|++.. | -.|.|+|++.+.|++|.+.||+..++.| --.|++.++++
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP 198 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKP 198 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCc
Confidence 3444555789999999999999999999988863 2 4899999999999999999999988776 34445544432
Q ss_pred ccccc---------------------------------------------------------------------------
Q 014217 97 ELERL--------------------------------------------------------------------------- 101 (428)
Q Consensus 97 ~~~~~--------------------------------------------------------------------------- 101 (428)
..-..
T Consensus 199 ~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~ 278 (494)
T KOG1456|consen 199 TRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGY 278 (494)
T ss_pred ceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCC
Confidence 21100
Q ss_pred --------cceEEEecCCC-CCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCC
Q 014217 102 --------EHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (428)
Q Consensus 102 --------~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~ 172 (428)
...+.|.+|.- .++-+.|.++|..||.|++|++++.+ .|-|.|+..+....++|+..||+..++. .
T Consensus 279 a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG-~ 353 (494)
T KOG1456|consen 279 ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFG-G 353 (494)
T ss_pred CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCcccc-c
Confidence 14688999974 47788999999999999999999875 5689999999999999999999988654 4
Q ss_pred cceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccc
Q 014217 173 SVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFH 252 (428)
Q Consensus 173 ~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
+ |.|.+++...-..- +...++. ..+.+..|.
T Consensus 354 k--l~v~~SkQ~~v~~~--------~pflLpD---------------gSpSfKdys------------------------ 384 (494)
T KOG1456|consen 354 K--LNVCVSKQNFVSPV--------QPFLLPD---------------GSPSFKDYS------------------------ 384 (494)
T ss_pred e--EEEeeccccccccC--------CceecCC---------------CCcchhhcc------------------------
Confidence 3 55555543210000 0000000 000000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 253 GIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPST 332 (428)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (428)
...+. .+ +++..
T Consensus 385 -----------------------~SkNn---------------------------RF------------------ssp~q 396 (494)
T KOG1456|consen 385 -----------------------GSKNN---------------------------RF------------------SSPEQ 396 (494)
T ss_pred -----------------------ccccc---------------------------cc------------------CChhH
Confidence 00000 00 00001
Q ss_pred CCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC
Q 014217 333 SSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 411 (428)
Q Consensus 333 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g 411 (428)
.+-+-...+.++|..-|.|..+|||.|..+|..-+. ..+|+|...+ +.++. -|.++|++.++|..|+..+|...+.+
T Consensus 397 AsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serSs-sGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 397 ASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERSS-SGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred hhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccccc-cceeeeehHHHHHHHHHHhccccccC
Confidence 111113557899999999999999999999977653 4778887776 33333 47899999999999999999999865
Q ss_pred ------eEEEEEEecCC
Q 014217 412 ------KKLKVQLKRDN 422 (428)
Q Consensus 412 ------~~i~v~~a~~~ 422 (428)
-.|++.|+-++
T Consensus 475 p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 475 PNGSFPFILKLCFSTSK 491 (494)
T ss_pred CCCCCCeeeeeeecccc
Confidence 45555555444
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=3.7e-18 Score=153.01 Aligned_cols=174 Identities=26% Similarity=0.451 Sum_probs=144.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEE
Q 014217 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (428)
Q Consensus 101 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (428)
..+++||++|+.++++|.|++.|+.||.|.++.+++++ +++++||+||+|++.+...+++.. ..+.++|+. |.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~--~~h~~dgr~--ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA--RTHKLDGRS--VEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc--cccccCCcc--ccce
Confidence 46789999999999999999999999999999999887 789999999999999999888854 233477776 5555
Q ss_pred eCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCC
Q 014217 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (428)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
.|.+.......
T Consensus 81 ~av~r~~~~~~--------------------------------------------------------------------- 91 (311)
T KOG4205|consen 81 RAVSREDQTKV--------------------------------------------------------------------- 91 (311)
T ss_pred eccCccccccc---------------------------------------------------------------------
Confidence 55443211100
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (428)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
...
T Consensus 92 -----------------------------------------------------------------------------~~~ 94 (311)
T KOG4205|consen 92 -----------------------------------------------------------------------------GRH 94 (311)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.....|||++||.++++++|+++|.+||.|..+.++.|..+.+++||+||.|.+.+...+++.. .-+.|.|+.+.|..|
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 1347999999999999999999999999999999999999999999999999999999988774 788899999999999
Q ss_pred cCCcCC
Q 014217 420 RDNKQN 425 (428)
Q Consensus 420 ~~~~~~ 425 (428)
-.+...
T Consensus 174 ~pk~~~ 179 (311)
T KOG4205|consen 174 IPKEVM 179 (311)
T ss_pred cchhhc
Confidence 877654
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=5.1e-17 Score=133.35 Aligned_cols=238 Identities=19% Similarity=0.232 Sum_probs=135.7
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEcc-CC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEE
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR-GS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~-~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (428)
-++|||.+||.++...+|+.+|+.|-..+...+.. ++ +...+-+|||.|.+..+|..|+++|||..+-......++++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 58999999999999999999999997777666533 33 22346799999999999999999999988555555668999
Q ss_pred eCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCC
Q 014217 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (428)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
+|+...++...+ +..+++..+++....++. .++..+..
T Consensus 114 lAKSNtK~kr~k----------------------~sgtP~~s~al~~~~~~~------~qr~sa~~-------------- 151 (284)
T KOG1457|consen 114 LAKSNTKRKRRK----------------------GSGTPGSSPALVIDNRNK------EQRKSADD-------------- 151 (284)
T ss_pred ehhcCcccccCC----------------------CCCCCCCCccccccccCh------hhcccchh--------------
Confidence 997764332220 000111111111100000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (428)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
........ +...++.+...+...+ ..+++...+....+..+... ...- .....+..
T Consensus 152 ------qhd~~l~~-----p~~l~~~~~a~al~~~------~~t~~~~l~a~~~~~P~a~a--~l~k-----s~q~~~~~ 207 (284)
T KOG1457|consen 152 ------QHDEGLSD-----PDELQEPGNADALKEN------DTTKSEALSAPDSKAPSANA--HLEK-----SSQGGSGA 207 (284)
T ss_pred ------hccccccC-----ccccCCccccccCCCc------cccchhhhhhhhhcCCcccc--hhhh-----hhcccccc
Confidence 00000000 1111111100000000 00111111111111000000 0000 00000122
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 409 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l 409 (428)
..+.||||.||..++++++|+.+|+.|......+|... . ....||++|++.+.|..|+..|+|..+
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 34679999999999999999999999999888887422 2 245799999999999999999999887
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=1.7e-16 Score=131.79 Aligned_cols=206 Identities=21% Similarity=0.400 Sum_probs=143.8
Q ss_pred ceEEEecCCCCCCHHHHHH----hccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 103 HKLFIGMLPKNVSEAEVSA----LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
.+|||.||+..+..++|++ +|+.||.|.+|..... ...+|.|||.|++.+.|..|+..|+|.. +.|. ++.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfp-FygK--~mri 84 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFP-FYGK--PMRI 84 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCc-ccCc--hhhe
Confidence 3999999999999999988 9999999998888754 3468999999999999999999999987 5555 4999
Q ss_pred EeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
.||..+.....+............+.. .....
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~------~~~~~------------------------------------------ 116 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGE------ILARI------------------------------------------ 116 (221)
T ss_pred ecccCccchhhccCceeccccCccccc------ccccc------------------------------------------
Confidence 999887554433110000000000000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
. ++....|..+. ......+.+. ....
T Consensus 117 ----------------------~-~~~~~ng~~~~---------------~~~~~~p~p~----------------~~~~ 142 (221)
T KOG4206|consen 117 ----------------------K-QPLDTNGHFYN---------------MNRMNLPPPF----------------LAQM 142 (221)
T ss_pred ----------------------C-Ccccccccccc---------------cccccCCCCc----------------cccC
Confidence 0 00000000000 0000000000 0112
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~-g~~i~v~ 417 (428)
..+..++|+.|||.+++.+.|..+|++|.....|+++... .+.|||+|.+...|..|.+.|+|..+. ...++|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3467999999999999999999999999999999988764 479999999999999999999999987 8899998
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 55
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.73 E-value=2.8e-15 Score=141.97 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=111.6
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
.+.+.+-+++.+++.++.|+++||... .|..+.|..+...+..+|-++|+|...+++.+|+..-+. .+. .+.+++
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~--~~~--~R~~q~ 383 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPS--DDV--NRPFQT 383 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCch--hhh--hcceee
Confidence 567888899999999999999999644 467777777775555589999999999999999876221 111 122222
Q ss_pred eccCc----------------------------------------ccccccceEEEecCCCCCCHHHHHHhccccCCeEE
Q 014217 92 KYADG----------------------------------------ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131 (428)
Q Consensus 92 ~~~~~----------------------------------------~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~ 131 (428)
..... .......+|||..||..+++.++.+.|.....|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 22100 00111358999999999999999999999998887
Q ss_pred -EEEccCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 014217 132 -LQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (428)
Q Consensus 132 -v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~ 164 (428)
|.+-+.++++-++.|||.|..++.+..|...-+
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~ 497 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKT 497 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhccc
Confidence 777777888889999999999888888875433
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=7.3e-17 Score=134.51 Aligned_cols=84 Identities=29% Similarity=0.473 Sum_probs=81.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|.|.||++++++++|+++|..||.|.+|.|.+|+++|+++|||||.|.+.++|++|+..|||+-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 014217 419 KRDN 422 (428)
Q Consensus 419 a~~~ 422 (428)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9976
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=6.9e-16 Score=122.97 Aligned_cols=172 Identities=20% Similarity=0.328 Sum_probs=127.3
Q ss_pred ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 101 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.+++|||+|||.++.+.+|.++|-+||.|..|.+..... ...||||+|++..+|+.||..-+|.. ++|+. |.|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYd-ydg~r--LRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYD-YDGCR--LRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccc-cCcce--EEEEe
Confidence 367899999999999999999999999999888754432 25699999999999999999989977 78876 88988
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+..-..... ..-+|+.-+..+
T Consensus 80 prggr~s~~-----------------------------------~~G~y~gggrgG------------------------ 100 (241)
T KOG0105|consen 80 PRGGRSSSD-----------------------------------RRGSYSGGGRGG------------------------ 100 (241)
T ss_pred ccCCCcccc-----------------------------------cccccCCCCCCC------------------------
Confidence 844210000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
.+..... -+....
T Consensus 101 ---------------------------------------------------gg~gg~r----------------gppsrr 113 (241)
T KOG0105|consen 101 ---------------------------------------------------GGGGGRR----------------GPPSRR 113 (241)
T ss_pred ---------------------------------------------------CCCCccc----------------CCcccc
Confidence 0000000 000122
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
....|.|.+||.+-+|+||+++...-|.|....+.+| |++.|+|-+.|+...|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4488999999999999999999999999999999887 47999999999999999999887763
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=4.4e-16 Score=124.10 Aligned_cols=145 Identities=17% Similarity=0.334 Sum_probs=120.1
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
...+++|||+|||.++-|.||.++|.+||.|.+|.+-... ...+||||+|++..+|+.||.--++-. + .+..|+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYd-y--dg~rLR 76 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYD-Y--DGCRLR 76 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccc-c--CcceEE
Confidence 4568999999999999999999999999999988875443 355799999999999999998766543 3 347777
Q ss_pred eeccCcccc---------------------------cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcc
Q 014217 91 VKYADGELE---------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK 143 (428)
Q Consensus 91 ~~~~~~~~~---------------------------~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~ 143 (428)
|.++..-.. .....|.|++||..-++++|++...+.|.|-...+.++
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------ 150 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------
Confidence 777643211 11457999999999999999999999999988887765
Q ss_pred cEEEEEeCCHHHHHHHHHHHcCCc
Q 014217 144 GCAFLKYETKEQALAALEAINGKH 167 (428)
Q Consensus 144 g~afV~f~~~e~a~~a~~~l~~~~ 167 (428)
|++.|+|...|+-+-|+..|+...
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccc
Confidence 488999999999999999998765
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=2.4e-16 Score=112.24 Aligned_cols=70 Identities=33% Similarity=0.690 Sum_probs=67.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 345 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 345 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
|||+|||.++|+++|+++|+.||.|..+++..+ ..+..+|+|||+|.+.++|..|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999986
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=8.5e-15 Score=131.71 Aligned_cols=248 Identities=21% Similarity=0.278 Sum_probs=152.3
Q ss_pred cceEEEecCCCCCCHHHHHHhcc-ccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.+.+||+|+|+++.|.+|+++|+ +.|.|+.|.++.+..|+++|+|.|+|+++|.+++|++.||... ++|+. |.|+-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~GR~--l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE-VNGRE--LVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc-ccCce--EEEec
Confidence 46799999999999999999996 6789999999999999999999999999999999999999877 88876 77765
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
....+..+.- +-.. .......+.+........+......-+.
T Consensus 121 d~d~q~~~~~-----~~~r-------~g~~~f~~~~~~q~G~~~l~~~g~ggG~-------------------------- 162 (608)
T KOG4212|consen 121 DHDEQRDQYG-----RIVR-------DGGGGFGGGGGVQGGNGGLNGGGGGGGD-------------------------- 162 (608)
T ss_pred cCchhhhhhh-----heee-------ccCcccccCcceecccccccccCCCCcc--------------------------
Confidence 5443221111 0000 0000001111000000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCc---cCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRN---YAMPPSGFVGS-GYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSG 336 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (428)
............... .......+... .+.-+.... .|.. +...
T Consensus 163 ----~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~--------~Flr-----~~h~---------------- 209 (608)
T KOG4212|consen 163 ----RDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA--------SFLR-----SLHI---------------- 209 (608)
T ss_pred ----ccCCCCcccccccccccCccccccccccchhhhcccchh--------hhhh-----hccC----------------
Confidence 000000000000000 00000000000 000000000 0000 0000
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q 014217 337 GTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 416 (428)
Q Consensus 337 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v 416 (428)
...+....+||.||.+.+....|.+.|.-.|.|..|.+-.|| .|.++|++.|+|.++-+|-.|+..|++--+..++..+
T Consensus 210 f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~ 288 (608)
T KOG4212|consen 210 FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTV 288 (608)
T ss_pred CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCcccccee
Confidence 011234678999999999999999999999999999999997 7899999999999999999999999987788888888
Q ss_pred EEecCCcC
Q 014217 417 QLKRDNKQ 424 (428)
Q Consensus 417 ~~a~~~~~ 424 (428)
.+.+-...
T Consensus 289 Rl~~~~Dr 296 (608)
T KOG4212|consen 289 RLDRIPDR 296 (608)
T ss_pred eccccccc
Confidence 87665443
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=2.6e-16 Score=127.46 Aligned_cols=84 Identities=29% Similarity=0.385 Sum_probs=75.8
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
...+++|||+|||+++|+++|+++|++||.|.+|+++.|+.+++++|||||+|.+.++|+.||+.||+.. +.+ +.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999998875 444 7888
Q ss_pred eeccCcc
Q 014217 91 VKYADGE 97 (428)
Q Consensus 91 ~~~~~~~ 97 (428)
+.|+...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 8887643
No 62
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=3e-15 Score=132.40 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=120.3
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhh---cC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC---
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKE---FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG--- 84 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~---~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~--- 84 (428)
.+.--|.++|||+++|+.||.+||.. .+ ..+.|-+++.. .|+.+|-|||.|..+++|+.||.+.. ..++.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khr--q~iGqRYI 235 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHR--QNIGQRYI 235 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHH--HHHhHHHH
Confidence 34567889999999999999999963 22 45556666665 59999999999999999999998732 22222
Q ss_pred -------------------------CCCcceeeccC--cccccccceEEEecCCCCCCHHHHHHhccccC-CeE--EEEE
Q 014217 85 -------------------------ASSPLQVKYAD--GELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIK--DLQI 134 (428)
Q Consensus 85 -------------------------~~~~~~~~~~~--~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~--~v~i 134 (428)
.+..+--..+. ........+|.+++||+..+.|+|.++|..|. .|. .|++
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHm 315 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHM 315 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEE
Confidence 11111110000 00111157899999999999999999999997 343 4899
Q ss_pred ccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 135 ~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
..+..|+..|.|||+|.+.|+|..|..+.++.. ...+. |.|--++
T Consensus 316 v~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~-mk~RY--iEvfp~S 360 (508)
T KOG1365|consen 316 VLNGQGRPSGEAFIQMRNAERARAAAQKCHKKL-MKSRY--IEVFPCS 360 (508)
T ss_pred EEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhh-cccce--EEEeecc
Confidence 999999999999999999999999999888754 44443 5553333
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.67 E-value=2.8e-15 Score=124.57 Aligned_cols=157 Identities=21% Similarity=0.410 Sum_probs=128.0
Q ss_pred CceEEEeCCCCCCCHHHHHH----HHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 14 RVKLFVGQVPKHMTEAQLLA----MFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
..+|||.||+..+..++|++ +|++||.|..|...+ |.+.+|.|||.|.+.+.|-.|+..|+|..+++ +++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K~m 82 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYG---KPM 82 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccC---chh
Confidence 34999999999999999998 999999999887766 46789999999999999999999999987655 455
Q ss_pred eeeccCccc---------------------------------------------------ccccceEEEecCCCCCCHHH
Q 014217 90 QVKYADGEL---------------------------------------------------ERLEHKLFIGMLPKNVSEAE 118 (428)
Q Consensus 90 ~~~~~~~~~---------------------------------------------------~~~~~~v~v~nlp~~~t~~~ 118 (428)
++.++.... ......+++.|+|..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 555442111 11135789999999999999
Q ss_pred HHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 119 l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
+..+|+.|..-.++++.... ++.|||+|.+...|..|.+.+++..+-. ...+.|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~--~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITK--KNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceecc--CceEEecccC
Confidence 99999999999999988764 6799999999999999999999977433 2346776653
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=9.3e-16 Score=133.19 Aligned_cols=83 Identities=33% Similarity=0.556 Sum_probs=76.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...++|+|+|||+..-+-||+..|.+||.|.+|.|+.+ +..+||||||+|++++||.+|.++|||..++||+|.|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 45689999999999999999999999999999999987 4668999999999999999999999999999999999988
Q ss_pred cCCcC
Q 014217 420 RDNKQ 424 (428)
Q Consensus 420 ~~~~~ 424 (428)
-.+-+
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 65533
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.5e-15 Score=107.98 Aligned_cols=70 Identities=31% Similarity=0.657 Sum_probs=65.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 345 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 345 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
|+|+|||.++++++|+++|+.||.|..+++..++. +..+|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999975 99999999999999999999999999999999985
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.7e-16 Score=115.52 Aligned_cols=81 Identities=15% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.++||||+||++.+++|+|.++|+.+|+|.+|.+-.|+.+-.+=||+||+|.+.++|..|++.++|..|+.+.|+++|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56999999999999999999999999999999998998888899999999999999999999999999999999999864
Q ss_pred C
Q 014217 421 D 421 (428)
Q Consensus 421 ~ 421 (428)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 67
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=6.3e-16 Score=125.46 Aligned_cols=85 Identities=26% Similarity=0.428 Sum_probs=80.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
.+...+|.|.||-+.++.++|+.+|++||.|.+|.|+.|+-+..++|||||.|....+|+.|+++|+|..|+|+.|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014217 419 KRDNK 423 (428)
Q Consensus 419 a~~~~ 423 (428)
|+--.
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 87543
No 68
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=1e-14 Score=119.89 Aligned_cols=157 Identities=24% Similarity=0.308 Sum_probs=121.2
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCC-CCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.++..-++|||.|||-++...||..+|..|.-.+.+.+-... ....++.+|||.|.+.++|..|+++||+.++-.....
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 355668999999999999999999999999877776654432 2234668999999999999999999999876555555
Q ss_pred cceeeccCcccccc------------------------------------------------------------------
Q 014217 88 PLQVKYADGELERL------------------------------------------------------------------ 101 (428)
Q Consensus 88 ~~~~~~~~~~~~~~------------------------------------------------------------------ 101 (428)
.+.+..++...+..
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 55555443221110
Q ss_pred ---------------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHH
Q 014217 102 ---------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (428)
Q Consensus 102 ---------------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~ 160 (428)
-.+|||-||..+++|++|+.+|+.|-.-..++|... .| -..||++|+..+.|..|+
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHH
Confidence 037999999999999999999999965544454332 22 459999999999999999
Q ss_pred HHHcCCcc
Q 014217 161 EAINGKHK 168 (428)
Q Consensus 161 ~~l~~~~~ 168 (428)
..|+|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99999763
No 69
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.9e-15 Score=118.68 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=74.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..+.|||+||+..+++.||...|+.||.|.+|+|...+ .|||||+|+++-||..|+..|+|+.|.|..|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46999999999999999999999999999999998754 6999999999999999999999999999999999998
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7765
No 70
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.60 E-value=1.6e-14 Score=132.49 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEE-EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...+|.+++||+.+|++||.+||+..-.+.. +-++++. .++++|.|||+|++.+.|+.|+.. |-..++.|-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3478999999999999999999998865555 3355664 889999999999999999999997 778888888887644
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=125.68 Aligned_cols=77 Identities=10% Similarity=0.280 Sum_probs=71.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecC
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 421 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~ 421 (428)
.++|||+||++.+|+++|+++|+.||.|.+|.|+.++. ++|||||+|.++++|..|+. |||..|.|+.|+|.+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 48999999999999999999999999999999998853 47999999999999999995 999999999999999874
Q ss_pred C
Q 014217 422 N 422 (428)
Q Consensus 422 ~ 422 (428)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.7e-15 Score=122.55 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=77.9
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
+-.+.++|.|.||+.+++|++|+++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||+.||+..+ ....|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEE
Confidence 445889999999999999999999999999999999999999999999999999999999999999998654 44788
Q ss_pred eeeccCcc
Q 014217 90 QVKYADGE 97 (428)
Q Consensus 90 ~~~~~~~~ 97 (428)
++.|+++.
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99998764
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.5e-14 Score=122.87 Aligned_cols=86 Identities=24% Similarity=0.514 Sum_probs=81.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..++-+||||.-|++++++..|+..|+.||.|..|+|+.++.+|+++|||||+|++.-+...|.+..+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCc
Q 014217 418 LKRDNK 423 (428)
Q Consensus 418 ~a~~~~ 423 (428)
+-+.+-
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 876553
No 74
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=9e-15 Score=121.78 Aligned_cols=80 Identities=28% Similarity=0.409 Sum_probs=74.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.-+.|||+||+-.+..|+|+++|++||+|+.+.|+.|+.+|++||||||+|++.|.|.+|.+.- .-.++||+.-|.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3489999999999999999999999999999999999999999999999999999999999984 667899999998875
Q ss_pred C
Q 014217 421 D 421 (428)
Q Consensus 421 ~ 421 (428)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2.6e-14 Score=102.83 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
-++.|||+|||+++|.|++.++|.+||.|..|+|-..+++ +|.|||.|++..+|.+|++.|+|..+.++.|.|-+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4589999999999999999999999999999999766644 8999999999999999999999999999999998876
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
+-+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 543
No 76
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.5e-14 Score=102.85 Aligned_cols=64 Identities=30% Similarity=0.635 Sum_probs=60.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 17 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
|||+|||+++|+++|+++|+.||.|..+.+..+ .+++.+|+|||+|.+.++|++|++.|++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 799999999999999999999999999999998 5789999999999999999999999988643
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=122.64 Aligned_cols=165 Identities=26% Similarity=0.492 Sum_probs=126.1
Q ss_pred ceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
..+||++||+.+.+.+|..+|..||.+..+.+. .||+||.|++.-+|..|+..|++.. +.+.. +.+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~-l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE-LCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCce-eccee--eeeeccc
Confidence 368999999999999999999999999988886 5699999999999999999999977 66665 7787775
Q ss_pred CHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCC
Q 014217 183 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 262 (428)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (428)
.....+ +..+.+.-.+ ....+.
T Consensus 72 ~~~~~~-------------------------g~~~~g~r~~------------~~~~~~--------------------- 93 (216)
T KOG0106|consen 72 GKRRGR-------------------------GRPRGGDRRS------------DSRRYR--------------------- 93 (216)
T ss_pred cccccc-------------------------CCCCCCCccc------------hhhccC---------------------
Confidence 431000 0000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPG 342 (428)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (428)
+ -.-..
T Consensus 94 --------------------~------------------------------------------------------p~~s~ 99 (216)
T KOG0106|consen 94 --------------------P------------------------------------------------------PSRTH 99 (216)
T ss_pred --------------------C------------------------------------------------------ccccc
Confidence 0 01145
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
+.+.|.|++..+.+.+|.++|+.+|.+....+ ..+++||+|++.++|..|+..|+|..+.|+.|.+.
T Consensus 100 ~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 100 FRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 89999999999999999999999999954444 24689999999999999999999999999999983
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.6e-15 Score=120.64 Aligned_cols=84 Identities=26% Similarity=0.466 Sum_probs=78.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..++.-|||+|||++.|+.||.-+||+||+|+.|.+++|+.||+++||||+.|++..+-..|+.-|||..+.||.|+|+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ecCC
Q 014217 419 KRDN 422 (428)
Q Consensus 419 a~~~ 422 (428)
-..-
T Consensus 112 v~~Y 115 (219)
T KOG0126|consen 112 VSNY 115 (219)
T ss_pred cccc
Confidence 5443
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=3.3e-14 Score=129.86 Aligned_cols=79 Identities=19% Similarity=0.460 Sum_probs=72.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCH--HHHHHHHHHhcCceeCCeEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP--ASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~--e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
....+|||+||+++++++||+.+|+.||.|.+|.|++ ++| +|||||+|.+. +++.+|+..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3458999999999999999999999999999999994 466 89999999987 78999999999999999999999
Q ss_pred EecCC
Q 014217 418 LKRDN 422 (428)
Q Consensus 418 ~a~~~ 422 (428)
.||..
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99864
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=9.5e-14 Score=99.06 Aligned_cols=72 Identities=39% Similarity=0.714 Sum_probs=67.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 344 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 344 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
+|+|+|||..+++++|+++|+.||.|..+.+..++ +.++|+|||+|.+.++|..|+..++|..++|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 7789999999999999999999999999999999874
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.4e-14 Score=107.28 Aligned_cols=86 Identities=20% Similarity=0.404 Sum_probs=77.1
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.+.-..+++|||+||++-+|||.|-++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|..||+-+++..+ ..+
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr 106 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDR 106 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---ccc
Confidence 44567899999999999999999999999999999999989999999999999999999999999999998864 347
Q ss_pred cceeeccCc
Q 014217 88 PLQVKYADG 96 (428)
Q Consensus 88 ~~~~~~~~~ 96 (428)
+|++.|...
T Consensus 107 ~ir~D~D~G 115 (153)
T KOG0121|consen 107 PIRIDWDAG 115 (153)
T ss_pred ceeeecccc
Confidence 888887643
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.4e-14 Score=118.36 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=69.1
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
+.-..+|||+||+|.+..|+|+++|.+||+|++..|+.|+.|||++||+||.|.+.+.|++|.+- ...+++|+.....
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD--PNPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC--CCCcccccccccc
Confidence 44567999999999999999999999999999999999999999999999999999999999765 5567877444443
Q ss_pred e
Q 014217 91 V 91 (428)
Q Consensus 91 ~ 91 (428)
+
T Consensus 87 l 87 (247)
T KOG0149|consen 87 L 87 (247)
T ss_pred h
Confidence 3
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.51 E-value=7.2e-13 Score=116.30 Aligned_cols=159 Identities=12% Similarity=0.312 Sum_probs=125.0
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
.-...|||.|||.++|.+++.++|++||.|.. |++.++.. |..+|-|.+.|-..+++..|++.|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r- 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR- 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc-
Confidence 34566999999999999999999999996654 78888885 999999999999999999999999887543
Q ss_pred CCCCcceeeccCcc---------------------------------------cccccceEEEecCCC----CCC-----
Q 014217 84 GASSPLQVKYADGE---------------------------------------LERLEHKLFIGMLPK----NVS----- 115 (428)
Q Consensus 84 ~~~~~~~~~~~~~~---------------------------------------~~~~~~~v~v~nlp~----~~t----- 115 (428)
| ..++|..++-+ .....++|.++|+-. ..+
T Consensus 210 g--~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 G--KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred C--cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 3 66666544211 111146899998842 233
Q ss_pred --HHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 116 --EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 116 --~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
.++|.+-..+||.|.+|.|... .+.|.+-|.|.+.++|..||+.|+|.- |+|+.+...+
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~-fdgRql~A~i 348 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW-FDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCee-ecceEEEEEE
Confidence 3456777899999999999743 247899999999999999999999976 8888754444
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-14 Score=119.21 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=80.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.-++|||++|.++|++.-|...|-.||.|.+|.|+.|.++++++|||||+|.-.|||.+|+..||+.+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
+.+.
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 8654
No 85
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=8.1e-14 Score=99.01 Aligned_cols=63 Identities=32% Similarity=0.575 Sum_probs=57.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 17 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
|||+|||+++++++|+++|+.+|.|..+++..++. ++++|+|||+|.+.++|.+|++.+++..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~ 63 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKE 63 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcE
Confidence 79999999999999999999999999999999987 8999999999999999999999987553
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.4e-13 Score=97.84 Aligned_cols=71 Identities=38% Similarity=0.681 Sum_probs=67.2
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 347 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 347 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999999874
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.9e-14 Score=118.67 Aligned_cols=141 Identities=24% Similarity=0.427 Sum_probs=115.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
..|||++||+.+.+.+|..||..||.+.++.+.. ||+||+|.+..+|..|+..+|+..+... . +.+.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e-~--~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGE-R--LVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecce-e--eeeecc
Confidence 5799999999999999999999999998876532 5899999999999999999988754443 2 556655
Q ss_pred Ccc------c---------------ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCH
Q 014217 95 DGE------L---------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK 153 (428)
Q Consensus 95 ~~~------~---------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 153 (428)
... . ......++|.+++..+.+.+|.+.|+.+|.+....+. .+++||+|...
T Consensus 71 r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 71 RGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQ 143 (216)
T ss_pred cccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhh
Confidence 421 0 1114678999999999999999999999999544442 56999999999
Q ss_pred HHHHHHHHHHcCCccCCCCcc
Q 014217 154 EQALAALEAINGKHKMEGSSV 174 (428)
Q Consensus 154 e~a~~a~~~l~~~~~~~g~~~ 174 (428)
+++..|++.|++.. +.++.+
T Consensus 144 ~da~ra~~~l~~~~-~~~~~l 163 (216)
T KOG0106|consen 144 EDAKRALEKLDGKK-LNGRRI 163 (216)
T ss_pred hhhhhcchhccchh-hcCcee
Confidence 99999999999988 677763
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=8.2e-14 Score=105.30 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=79.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.+..|||.|+-+..++++|.+.|+.||+|..+++-.|+.+|..+|||+|+|++.++|++|+..|||..|-|.+|.|+|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
.+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5543
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1e-13 Score=130.11 Aligned_cols=82 Identities=33% Similarity=0.604 Sum_probs=79.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
++|||+|+|+++++++|.++|+..|.|.+++++.|+++|+.+||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 014217 423 KQ 424 (428)
Q Consensus 423 ~~ 424 (428)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 64
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.9e-13 Score=115.02 Aligned_cols=76 Identities=9% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.+.+|||+||++.+|+++|++||+.||.|.+|+|+++. ..+|+|||+|+++++|..|+ .|+|..|.+++|.|.-+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45899999999999999999999999999999999884 34589999999999999998 589999999999998755
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=8e-13 Score=94.74 Aligned_cols=74 Identities=35% Similarity=0.693 Sum_probs=69.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 344 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 344 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
+|+|+|||..+++++|+++|+.||.|..+.+..++ .+.++|+|||+|.+.++|..|+..+++..++|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999886 447899999999999999999999999999999999874
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=4.6e-13 Score=90.28 Aligned_cols=56 Identities=41% Similarity=0.641 Sum_probs=51.2
Q ss_pred HHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 359 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 359 L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
|+++|++||+|.++.+...+ +|+|||+|.+.++|..|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997553 589999999999999999999999999999999986
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=4.6e-13 Score=94.62 Aligned_cols=62 Identities=23% Similarity=0.485 Sum_probs=56.1
Q ss_pred HHHHHHHhh----cCCCeEEEE-EEeeCCC--CCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 356 DQELGNAFQ----AFGRVLSAK-VFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 356 ~~~L~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
+++|+++|+ .||.|.+|. |+.++.+ +.++|+|||+|.+.++|..|+..|||+.++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7777666 8999999999999999999999999999999999863
No 94
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=8.4e-13 Score=114.29 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=67.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
.++|||+|||+.+|+++|++||+.||.|.+|+++.+.. ++|||||+|.+.++|+.||. |++.. +.+ +.|++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~-l~g--r~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT-IVD--QSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe-eCC--ceEEEEe
Confidence 57999999999999999999999999999999998864 46899999999999999995 88765 444 7888887
Q ss_pred cCcc
Q 014217 94 ADGE 97 (428)
Q Consensus 94 ~~~~ 97 (428)
....
T Consensus 77 a~~~ 80 (260)
T PLN03120 77 AEDY 80 (260)
T ss_pred ccCC
Confidence 7543
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.5e-13 Score=105.12 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=67.0
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
.-.++|||+||+.++++.||...|..||++.+|+|.+.+. |||||+|++..+|..|+..|+++. ++| ..+.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~-~cG--~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKD-ICG--SRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCcc-ccC--ceEEE
Confidence 4479999999999999999999999999999999988664 799999999999999999999986 555 55666
Q ss_pred eccCc
Q 014217 92 KYADG 96 (428)
Q Consensus 92 ~~~~~ 96 (428)
..+..
T Consensus 80 E~S~G 84 (195)
T KOG0107|consen 80 ELSTG 84 (195)
T ss_pred EeecC
Confidence 65543
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2.9e-12 Score=92.41 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=70.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
+-++...+-|||+|||+++|.|++-++|.+||+|.-|++-..+. .+|.|||.|++..+|++|.++|.+..+ . .+
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~-~--~r 85 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNV-D--NR 85 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhccccc-C--Cc
Confidence 45677789999999999999999999999999999999988765 569999999999999999999988653 2 36
Q ss_pred cceeeccCc
Q 014217 88 PLQVKYADG 96 (428)
Q Consensus 88 ~~~~~~~~~ 96 (428)
.+.+-+..+
T Consensus 86 yl~vlyyq~ 94 (124)
T KOG0114|consen 86 YLVVLYYQP 94 (124)
T ss_pred eEEEEecCH
Confidence 666665543
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=2.1e-12 Score=118.89 Aligned_cols=79 Identities=35% Similarity=0.634 Sum_probs=76.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.++|||+|||.++++++|+++|..||.|..+.|..++.++.++|+|||+|.+.++|..|+..++|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999999999965
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=7.9e-12 Score=115.08 Aligned_cols=122 Identities=34% Similarity=0.561 Sum_probs=102.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
.++|||+|||+++|+++|+++|..||.|..+.+..++.+++++|||||+|.+.++|..|++.+++.. +.+ +.+.+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~-~~~--~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE-LEG--RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe-ECC--ceeEeec
Confidence 6999999999999999999999999999999999998899999999999999999999999998765 444 5666655
Q ss_pred cC----ccccc---------------------ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC
Q 014217 94 AD----GELER---------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS 138 (428)
Q Consensus 94 ~~----~~~~~---------------------~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 138 (428)
.. ..... ....+++.+++..++..++...|..+|.+....+....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 21 11110 13578999999999999999999999999766665554
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3.3e-11 Score=112.77 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=101.6
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
++..-..++|+|-|||.++++++|+.+|+.||+|++|+.... .+|.+||+|-|..+|++|++.|+...+...
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~--- 140 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGK--- 140 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhh---
Confidence 445677899999999999999999999999999999765444 447999999999999999999998765332
Q ss_pred cceeeccCcccccc-----------------------cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCccc
Q 014217 88 PLQVKYADGELERL-----------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKG 144 (428)
Q Consensus 88 ~~~~~~~~~~~~~~-----------------------~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g 144 (428)
.++........... ...+ ++.|++..+..-+...++.+|.+.. .- ++.-..
T Consensus 141 ~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~h 214 (549)
T KOG4660|consen 141 RIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE----TPLLNH 214 (549)
T ss_pred hhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc----ccchhh
Confidence 22211000000000 1122 3348887777666777777887654 22 121233
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCC
Q 014217 145 CAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (428)
Q Consensus 145 ~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (428)
.-++.|.+..++..+.. .+-.++.+.. ..+.+...
T Consensus 215 q~~~~~~~~~s~a~~~~--~~G~~~s~~~--~v~t~S~~ 249 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEP--RGGFLISNSS--GVITFSGP 249 (549)
T ss_pred hhhhhhccccchhhccc--CCceecCCCC--ceEEecCC
Confidence 66778887777744443 3333333333 44555443
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=3e-12 Score=117.30 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=71.0
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCH--HHHHHHHHHhcCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSR--QEADKAVNACHNKKTLPG 84 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~--~~a~~al~~l~~~~~~~~ 84 (428)
++++.....+||||||++++|++||+..|+.||.|..|.|++. +| +|||||+|.+. .++.+||+.||+..+.
T Consensus 3 eees~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWK-- 76 (759)
T PLN03213 3 EKSSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK-- 76 (759)
T ss_pred ccccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeec--
Confidence 4556677799999999999999999999999999999999944 56 89999999987 7899999999998763
Q ss_pred CCCcceeeccC
Q 014217 85 ASSPLQVKYAD 95 (428)
Q Consensus 85 ~~~~~~~~~~~ 95 (428)
++.|++..++
T Consensus 77 -GR~LKVNKAK 86 (759)
T PLN03213 77 -GGRLRLEKAK 86 (759)
T ss_pred -CceeEEeecc
Confidence 3677777664
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-11 Score=113.89 Aligned_cols=157 Identities=20% Similarity=0.404 Sum_probs=117.5
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCC-CC--CCccc---eEEEEeCCHHHHHHHHHHhcC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TT--RASRG---CCFVICPSRQEADKAVNACHN 78 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~--~~~~g---~afV~f~~~~~a~~al~~l~~ 78 (428)
....+...-+++|||++||++++|+.|...|..||.+. |.+.... .. -.++| |+|+.|+++.++...|..+..
T Consensus 250 ~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 250 PRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34566788899999999999999999999999999877 4444211 11 12566 999999999999999998743
Q ss_pred CC---CCCC-----CCCcceee-cc--C-------cccccccceEEEecCCCCCCHHHHHHhcc-ccCCeEEEEEccC-C
Q 014217 79 KK---TLPG-----ASSPLQVK-YA--D-------GELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRG-S 138 (428)
Q Consensus 79 ~~---~~~~-----~~~~~~~~-~~--~-------~~~~~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~-~ 138 (428)
.. ++.- +.+.+++. |. + ...-+..++|||++||..++.++|..+|. .||.|..+-|..| +
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 11 0000 11112221 10 0 01111268999999999999999999998 8999999999888 4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHH
Q 014217 139 QQTSKGCAFLKYETKEQALAALEA 162 (428)
Q Consensus 139 ~g~~~g~afV~f~~~e~a~~a~~~ 162 (428)
-+-++|-|=|+|.+.....+||.+
T Consensus 409 ~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 409 LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCCCCCcceeeecccHHHHHHHhh
Confidence 556789999999999999999975
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=4.4e-12 Score=107.90 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=65.0
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
....+|||+||++.+|+++|++||+.||.|.+|++++|.. .+|+|||+|.++++|+.|+ .|++..+++ +.|.+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d---~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVD---QRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCC---ceEEE
Confidence 3568999999999999999999999999999999999854 4589999999999999998 788876543 55666
Q ss_pred ecc
Q 014217 92 KYA 94 (428)
Q Consensus 92 ~~~ 94 (428)
...
T Consensus 76 t~~ 78 (243)
T PLN03121 76 TRW 78 (243)
T ss_pred EeC
Confidence 543
No 103
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=3.1e-12 Score=111.54 Aligned_cols=85 Identities=29% Similarity=0.473 Sum_probs=72.6
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
+......++|+|+|||+..-+.||+.+|.+||.|.+|.|+-+. +.++||+||.|++.+||++|.++||+.. +.| |
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~-VEG--R 164 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTV-VEG--R 164 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcce-eec--e
Confidence 3344456899999999999999999999999999999999876 4599999999999999999999999985 555 7
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
+|+|..+...
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 7777666543
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.2e-13 Score=110.11 Aligned_cols=80 Identities=24% Similarity=0.495 Sum_probs=73.1
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
+-.++.-|||+|||+..||.||...|++||.|.+|.+++|+.||+++||||+.|++..+...|+.-||+-++++ +.|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---Rti 107 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTI 107 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999987643 566
Q ss_pred eee
Q 014217 90 QVK 92 (428)
Q Consensus 90 ~~~ 92 (428)
+|.
T Consensus 108 rVD 110 (219)
T KOG0126|consen 108 RVD 110 (219)
T ss_pred Eee
Confidence 664
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=8.1e-12 Score=118.00 Aligned_cols=166 Identities=19% Similarity=0.357 Sum_probs=124.2
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
..-...+++|+|||...++..++++...||+++...++++..+|-++||||.+|.+..-...|++.||+..+.. ..+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd---~~l 361 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD---KKL 361 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC---cee
Confidence 34456889999999999999999999999999999999999999999999999999999999999999976532 233
Q ss_pred eeeccCc-------ccc------------------cccceEEEecCC--CCC-CH-------HHHHHhccccCCeEEEEE
Q 014217 90 QVKYADG-------ELE------------------RLEHKLFIGMLP--KNV-SE-------AEVSALFSIYGTIKDLQI 134 (428)
Q Consensus 90 ~~~~~~~-------~~~------------------~~~~~v~v~nlp--~~~-t~-------~~l~~~f~~~G~v~~v~i 134 (428)
.+..+-. ... .....+.+.|+= .+. ++ |+++..+.+||.|..|.+
T Consensus 362 vvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~i 441 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEI 441 (500)
T ss_pred EeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEec
Confidence 2222100 000 002334444441 111 11 235566789999999999
Q ss_pred ccC-CCC---CcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeC
Q 014217 135 LRG-SQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (428)
Q Consensus 135 ~~~-~~g---~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (428)
++. .+. .+.|..||+|.+.++|++|++.|+|.. |.++. +...|-
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK-F~nRt--VvtsYy 489 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK-FANRT--VVASYY 489 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce-eCCcE--EEEEec
Confidence 887 332 356889999999999999999999988 88886 444443
No 106
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.2e-12 Score=108.31 Aligned_cols=80 Identities=20% Similarity=0.401 Sum_probs=71.4
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
.+-+||||+-|+++++|.+|+..|+.||+|+.|+|++|+.||+++|||||+|.++.+...|-+...+.+ +.+ +.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idg--rri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDG--RRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecC--cEEEE
Confidence 567999999999999999999999999999999999999999999999999999999999999988775 444 55555
Q ss_pred ecc
Q 014217 92 KYA 94 (428)
Q Consensus 92 ~~~ 94 (428)
.+-
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 443
No 107
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=87.75 Aligned_cols=64 Identities=38% Similarity=0.624 Sum_probs=59.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
+|||+|||..+++++|+++|..||.+..+.+..++ +.++|+|||+|.+.++|+.|++.+++..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 58999999999999999999999999999998877 67889999999999999999999987543
No 108
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.29 E-value=4.5e-12 Score=103.29 Aligned_cols=83 Identities=29% Similarity=0.441 Sum_probs=74.4
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
+-....+|.|.||.+.++.++|+.+|.+||.|-+|.|..|..|+.++|||||.|.+..+|+.|+++|.+. ++.| ++|
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~-~ldg--Rel 85 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA-VLDG--REL 85 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce-eecc--cee
Confidence 3456789999999999999999999999999999999999999999999999999999999999999886 5666 677
Q ss_pred eeeccC
Q 014217 90 QVKYAD 95 (428)
Q Consensus 90 ~~~~~~ 95 (428)
.|+++.
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 666553
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=6.8e-12 Score=95.03 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=73.9
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
-+.--|||.|+...+||++|.+.|..||+|++|.+-.|..||..+|||+|+|++.++|+.|++.+|+..++. .++.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---q~v~V 146 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---QNVSV 146 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC---CceeE
Confidence 344568999999999999999999999999999999999999999999999999999999999999987644 78888
Q ss_pred eccC
Q 014217 92 KYAD 95 (428)
Q Consensus 92 ~~~~ 95 (428)
.|.-
T Consensus 147 Dw~F 150 (170)
T KOG0130|consen 147 DWCF 150 (170)
T ss_pred EEEE
Confidence 8864
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.1e-12 Score=110.22 Aligned_cols=85 Identities=25% Similarity=0.497 Sum_probs=80.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..+|..+|||.-|.+-+++|||.-+||.||.|.+|.|++|..+|.+.-||||+|.+.++..+|.-.|++..+++++|+|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 014217 418 LKRDN 422 (428)
Q Consensus 418 ~a~~~ 422 (428)
|+++=
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98764
No 111
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=2.4e-11 Score=86.13 Aligned_cols=63 Identities=35% Similarity=0.627 Sum_probs=58.8
Q ss_pred EeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 19 VGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 19 v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
|+|||..+++++|+++|+.||.|..+.+..++.+++++|+|||+|.+.++|..|++.+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 689999999999999999999999999999887899999999999999999999999986543
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=6.6e-13 Score=129.49 Aligned_cols=231 Identities=23% Similarity=0.198 Sum_probs=179.8
Q ss_pred ccCceEEEeCCCCCCCHH-HHHHHHhhcCceeEEEEEeCCCCCCccc-eEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 12 EERVKLFVGQVPKHMTEA-QLLAMFKEFALVDEVNIIKDKTTRASRG-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~-~l~~~f~~~g~i~~~~~~~~~~~~~~~g-~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+..++.++-+..... ..+..|..+|.|+.|++..... ..+.+ +.+++++....++.+.....+ -+.. +..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~-k~h~q~~~~~~~s~~~~~esat~pa~~--~~a~--~~~ 643 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF-KAHEQPQQQKVQSKHGSAESATVPAGG--ALAN--RSA 643 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc-cccccchhhhhhccccchhhccccccc--ccCC--ccc
Confidence 445677788888777555 6788999999999988766322 22333 889999999999999765322 2333 333
Q ss_pred eeeccCccccc-----------ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEc-cCCCCCcccEEEEEeCCHHHHH
Q 014217 90 QVKYADGELER-----------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL-RGSQQTSKGCAFLKYETKEQAL 157 (428)
Q Consensus 90 ~~~~~~~~~~~-----------~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~-~~~~g~~~g~afV~f~~~e~a~ 157 (428)
.+..++++... ...++|++||+..+.+++|...|..+|.+..+.+. ....++.+|+||+.|..++++.
T Consensus 644 av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 644 AVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred cCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 33332222211 13578999999999999999999999999887776 4457788999999999999999
Q ss_pred HHHHHHcCCccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 014217 158 AALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL 237 (428)
Q Consensus 158 ~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (428)
+|+....+.. .|.
T Consensus 724 aaV~f~d~~~--~gK----------------------------------------------------------------- 736 (881)
T KOG0128|consen 724 AAVAFRDSCF--FGK----------------------------------------------------------------- 736 (881)
T ss_pred hhhhhhhhhh--hhh-----------------------------------------------------------------
Confidence 9997655532 221
Q ss_pred cccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 238 MQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNS 317 (428)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
T Consensus 737 -------------------------------------------------------------------------------- 736 (881)
T KOG0128|consen 737 -------------------------------------------------------------------------------- 736 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHH
Q 014217 318 PGSVSPAVANSNPSTSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 397 (428)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A 397 (428)
..|+|+|+|+.-|.+.|+.+|+.+|++.+++++..+ .|+++|.|+|.|.+..+|
T Consensus 737 -------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 737 -------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADA 790 (881)
T ss_pred -------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchh
Confidence 457999999999999999999999999999988776 899999999999999999
Q ss_pred HHHHHHhcCceeCCeEEEEEEec
Q 014217 398 QNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 398 ~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.+++....+..+.-+.+.|..+.
T Consensus 791 s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 791 SRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhcccchhhhhhhcCccccccC
Confidence 99999988888877777777743
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.24 E-value=1.8e-11 Score=115.12 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=76.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
+.|||||+|++++|++|.++|+..|.|.+++++.|+.||+.+||+|++|.+.++|.+|++.||+..+ .++.|++.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 3489999988
Q ss_pred Ccccc
Q 014217 95 DGELE 99 (428)
Q Consensus 95 ~~~~~ 99 (428)
...+.
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 64444
No 114
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=1.3e-10 Score=83.12 Aligned_cols=64 Identities=39% Similarity=0.682 Sum_probs=59.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 5899999999999999999999999999999988754 778999999999999999999998865
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1e-10 Score=95.87 Aligned_cols=82 Identities=30% Similarity=0.412 Sum_probs=75.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcC-CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
......++|..+|..+.+.++..+|.+| |.|.++++.+++.||.++|||||+|.+.+.|.-|.+.||++-|.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4456889999999999999999999998 677888888999999999999999999999999999999999999999998
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
+=.
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 744
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=101.99 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=70.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKV 416 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l-~g~~l~g~~i~v 416 (428)
++....+|||+||...+++.+|+++|.+||+|.++.+...+ |+|||+|.+.+.|+.|...+ +-..++|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 55667999999999999999999999999999999998765 79999999999999988765 444569999999
Q ss_pred EEecCCc
Q 014217 417 QLKRDNK 423 (428)
Q Consensus 417 ~~a~~~~ 423 (428)
.|++++.
T Consensus 298 ~Wg~~~~ 304 (377)
T KOG0153|consen 298 KWGRPKQ 304 (377)
T ss_pred EeCCCcc
Confidence 9999943
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.3e-11 Score=99.12 Aligned_cols=88 Identities=25% Similarity=0.397 Sum_probs=79.1
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
-....++|||++|-..+||.-|...|-+||.|..|.+..|-.+++++||+||+|...++|..||+-||... +.| +.|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE-L~G--rti 82 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE-LFG--RTI 82 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh-hcc--eeE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999887 444 788
Q ss_pred eeeccCccccc
Q 014217 90 QVKYADGELER 100 (428)
Q Consensus 90 ~~~~~~~~~~~ 100 (428)
+|.++.+.+-.
T Consensus 83 rVN~AkP~kik 93 (298)
T KOG0111|consen 83 RVNLAKPEKIK 93 (298)
T ss_pred EEeecCCcccc
Confidence 88888766443
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-09 Score=101.63 Aligned_cols=64 Identities=23% Similarity=0.351 Sum_probs=59.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhh-cCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 403 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 403 (428)
++.+||||++||--++.++|..+|. -||.|..|-|-.|++-..++|-|.|+|.+...-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4669999999999999999999998 899999999999977889999999999999999999976
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=5e-11 Score=98.16 Aligned_cols=139 Identities=20% Similarity=0.252 Sum_probs=113.6
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
+...++|||.|+-..++||-|.++|-.-|+|..|.|..++. +..+ ||||.|.++-++..|++.+|+-.++. .+++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~---~e~q 80 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEE---DEEQ 80 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhcc---chhh
Confidence 45678999999999999999999999999999998888775 4455 99999999999999999999876433 3444
Q ss_pred eeccCcccccccceEEEec----CCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 014217 91 VKYADGELERLEHKLFIGM----LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (428)
Q Consensus 91 ~~~~~~~~~~~~~~v~v~n----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (428)
++ ++.++ |...++++.+.+.|+..|+++.+++.++.+|+++.+.++.+...-..=.++....+.
T Consensus 81 ~~------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 81 RT------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred cc------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 43 34444 556789999999999999999999999999999999998887665555666555443
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1e-11 Score=121.34 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=121.5
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
....+++||+||+..+.++||...|..+|.+..+++...+..++.+|.|||+|.+++++.+||...... +.|
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~--~~g------ 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC--FFG------ 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh--hhh------
Confidence 356789999999999999999999999999988888766667899999999999999999999875433 222
Q ss_pred eeccCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCc
Q 014217 91 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (428)
Q Consensus 91 ~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~ 167 (428)
...++|+|.|+..|.++++.++..+|.+.++.++....|..+|.|+|.|.++.++.++....+...
T Consensus 736 -----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 736 -----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAG 801 (881)
T ss_pred -----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhh
Confidence 356899999999999999999999999999999999999999999999999999999887665543
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=9.5e-10 Score=77.61 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=47.8
Q ss_pred HHHHHHHHh----hcCceeEEE-EEeCCCC--CCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 28 EAQLLAMFK----EFALVDEVN-IIKDKTT--RASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 28 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
+++|+++|+ .||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.||+..+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 678999998 999999995 7776666 88999999999999999999999999753
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=8.5e-10 Score=106.86 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=71.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecC
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 421 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~ 421 (428)
.+||||++|+..+++.||.++|+.||.|.+|.++.. +|||||.+.+..+|.+|+++|+...+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 489999999999999999999999999999988655 48999999999999999999999999999999999987
Q ss_pred CcC
Q 014217 422 NKQ 424 (428)
Q Consensus 422 ~~~ 424 (428)
+=-
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 643
No 123
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.00 E-value=1.3e-09 Score=94.23 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=75.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
....|+|.|||+.|+++||+++|..||.+..+-+..++ .|++.|.|-|.|...+||.+|++.+||..++|+.|.+.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 44889999999999999999999999999999998886 99999999999999999999999999999999999988765
Q ss_pred CC
Q 014217 421 DN 422 (428)
Q Consensus 421 ~~ 422 (428)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=8.2e-08 Score=93.47 Aligned_cols=74 Identities=32% Similarity=0.601 Sum_probs=65.2
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
-++||||++|+.+++|.||..+|..||.|++|.++... |||||.+.+-++|.+||..|++-++ ..+.|++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc---cceeeEEe
Confidence 35899999999999999999999999999999887654 6999999999999999999987654 34778888
Q ss_pred ccC
Q 014217 93 YAD 95 (428)
Q Consensus 93 ~~~ 95 (428)
|+.
T Consensus 491 Wa~ 493 (894)
T KOG0132|consen 491 WAV 493 (894)
T ss_pred eec
Confidence 874
No 125
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=1.9e-09 Score=72.49 Aligned_cols=56 Identities=34% Similarity=0.708 Sum_probs=48.5
Q ss_pred HHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeC
Q 014217 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (428)
Q Consensus 119 l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (428)
|+++|++||.|.++.+.... +++|||+|.+.++|..|++.||+.. +.|+. |.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g~~--l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ-FNGRP--LKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE-ETTEE--EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECCcE--EEEEEC
Confidence 68899999999999998764 5899999999999999999999987 77775 788764
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.94 E-value=1.2e-08 Score=75.44 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=70.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhc--CCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC----CeEEEE
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG----GKKLKV 416 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~----g~~i~v 416 (428)
+||+|+|||-..|.++|.+++.. .|....+.++.|-.++.+.|||||.|.+++.|.+-.+.+||+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988843 467788899999889999999999999999999999999999985 577888
Q ss_pred EEecC
Q 014217 417 QLKRD 421 (428)
Q Consensus 417 ~~a~~ 421 (428)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.92 E-value=8.3e-09 Score=96.61 Aligned_cols=86 Identities=24% Similarity=0.510 Sum_probs=78.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
..+++|||.+|...+-.-||+.+|++||.|+-++|+.+..+-..+.|+||++.+.++|.++|..||-..|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999987666667899999999999999999999999999999999999
Q ss_pred cCCcCC
Q 014217 420 RDNKQN 425 (428)
Q Consensus 420 ~~~~~~ 425 (428)
+.-+..
T Consensus 483 KNEp~G 488 (940)
T KOG4661|consen 483 KNEPGG 488 (940)
T ss_pred ccCccc
Confidence 876654
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.85 E-value=1e-08 Score=84.35 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=66.1
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhc-CceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
..+....--+||+.+|.-+.+.++..+|.++ |++..+++.+++.||-++|||||+|++++.|..|-+.||+--+
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence 3445556778999999999999999999998 7899889989999999999999999999999999999998743
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2.5e-09 Score=105.44 Aligned_cols=166 Identities=20% Similarity=0.261 Sum_probs=135.0
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
......++||++||+..+++.+|+..|..+|.+.+|.+-..+. ++-.-|+||.|.+.+.+-.|...+.+..+..| ...
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~r 444 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-THR 444 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC-ccc
Confidence 3566789999999999999999999999999999988766532 45556999999999999999888866654443 222
Q ss_pred ceeeccCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCcc
Q 014217 89 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (428)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~ 168 (428)
+.+... .....+.+|++++...+....|...|..||.|..|.+... .-||||+|++...++.|++.+.|..
T Consensus 445 ~glG~~---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap- 515 (975)
T KOG0112|consen 445 IGLGQP---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAP- 515 (975)
T ss_pred cccccc---ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCc-
Confidence 222222 3344678999999999999999999999999998877654 4599999999999999999999987
Q ss_pred CCCCcceEEEEeCCCHH
Q 014217 169 MEGSSVPLVVKWADTEK 185 (428)
Q Consensus 169 ~~g~~~~l~v~~a~~~~ 185 (428)
+.+-...+.|.++....
T Consensus 516 ~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASPPG 532 (975)
T ss_pred CCCCCcccccccccCCC
Confidence 66666779999997764
No 130
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.83 E-value=7.4e-09 Score=90.10 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=79.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+...+||+|+.+.+|.+++..+|+.||.|..+.|..++..+.++||+||+|.+.+.+..|+. |+|..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 366899999999999999999999999999999999999898999999999999999999999 9999999999999999
Q ss_pred cCCcCC
Q 014217 420 RDNKQN 425 (428)
Q Consensus 420 ~~~~~~ 425 (428)
+.....
T Consensus 178 r~~~pg 183 (231)
T KOG4209|consen 178 RTNVPG 183 (231)
T ss_pred eeecCC
Confidence 877443
No 131
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.81 E-value=3.6e-09 Score=95.28 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=75.9
Q ss_pred CceEE-EeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 342 GANLF-IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 342 ~~~l~-V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..+++ |.||++++++++|+.+|..+|.|..+++..+..++..+|+|+|.|.+...+..++.. +...+.++.+++.+.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 35555 999999999999999999999999999999999999999999999999999999998 8999999999999988
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
..+.
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 7754
No 132
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.1e-09 Score=90.41 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=62.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCcc
Q 014217 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~ 168 (428)
..+++|+|.|+...+++|-|.++|-..|+|.+|.|+.++++..+ ||||.|+++-+..-|++.+||..+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l 74 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDL 74 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchh
Confidence 34689999999999999999999999999999999999988777 999999999999999999999773
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=3.7e-09 Score=104.25 Aligned_cols=158 Identities=23% Similarity=0.340 Sum_probs=130.6
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeC
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (428)
.++||++|+...+++.+|+..|..+|.|.+|.|.+..-++...|+||.|.+...+-.|...+.+..+..|. +.+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~---~r~glG 448 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT---HRIGLG 448 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc---cccccc
Confidence 46899999999999999999999999999999987766666779999999999999998888887654443 222111
Q ss_pred CCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCC
Q 014217 182 DTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQG 261 (428)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (428)
..
T Consensus 449 ~~------------------------------------------------------------------------------ 450 (975)
T KOG0112|consen 449 QP------------------------------------------------------------------------------ 450 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 262 NAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPP 341 (428)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (428)
....
T Consensus 451 ----------------------------------------------------------------------------kst~ 454 (975)
T KOG0112|consen 451 ----------------------------------------------------------------------------KSTP 454 (975)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 1124
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEEEe
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 419 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~~a 419 (428)
.+.+++++|+.-+....|...|..||.|..|.+-.. . -||+|.|.+...|+.|+..|-|..|+| ++|+|.|+
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----Q--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----C--cceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 588999999999999999999999999998776332 2 589999999999999999999999986 88999998
Q ss_pred cCC
Q 014217 420 RDN 422 (428)
Q Consensus 420 ~~~ 422 (428)
...
T Consensus 529 ~~~ 531 (975)
T KOG0112|consen 529 SPP 531 (975)
T ss_pred cCC
Confidence 764
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.79 E-value=3.4e-09 Score=89.63 Aligned_cols=81 Identities=35% Similarity=0.516 Sum_probs=75.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
.+....||.+.|.-+++++.|...|.+|-.....++++|+.+|+++||+||.|.+++++.+|+..|+|+.++.|.|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred e
Q 014217 419 K 419 (428)
Q Consensus 419 a 419 (428)
.
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=1.8e-08 Score=89.10 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=72.7
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
-+.-++....+|||+||-..++|.||+++|.+||.|+.+++.... ++|||+|.+.+.|+.|.+..-+..++.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G- 292 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVING- 292 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecc-
Confidence 345567778999999999999999999999999999999988765 3999999999999999999877666666
Q ss_pred CCcceeeccCc
Q 014217 86 SSPLQVKYADG 96 (428)
Q Consensus 86 ~~~~~~~~~~~ 96 (428)
+.|.+.|..+
T Consensus 293 -~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 -FRLKIKWGRP 302 (377)
T ss_pred -eEEEEEeCCC
Confidence 8888889876
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=95.10 Aligned_cols=83 Identities=20% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCC---CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
++..++|||+||++.++++.|...|..||+|.+|+|+..+. ..+.+.||||.|.+..||.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34568999999999999999999999999999999986542 445678999999999999999999999999999999
Q ss_pred EEEecC
Q 014217 416 VQLKRD 421 (428)
Q Consensus 416 v~~a~~ 421 (428)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999965
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.74 E-value=1.9e-06 Score=83.11 Aligned_cols=77 Identities=10% Similarity=-0.060 Sum_probs=59.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..+.+.+-+++++++.+..|++.||..- .|..+.|..+.-.+-.+|.++|+|....+++.|++. |-..+-.|.|.+.
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTG 384 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhcceeec
Confidence 3456888899999999999999999654 577777766653334489999999999999999886 5555556666654
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=6.7e-08 Score=90.75 Aligned_cols=83 Identities=34% Similarity=0.639 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
...+|||+|||.+++.++|+++|..||.|....|..-.-.++...||||+|.+.+.+..|+.+ +-..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999998876542344459999999999999999998 5777899999999887
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 7543
No 139
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.1e-08 Score=88.75 Aligned_cols=90 Identities=20% Similarity=0.392 Sum_probs=77.2
Q ss_pred cCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCC
Q 014217 94 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (428)
Q Consensus 94 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~ 172 (428)
+.....+..+.|||..|.+-++.++|.-+|+.||.|.++.|+++. +|.+..||||+|++.++|+.|.-++++.. ++.+
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL-IDDr 309 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL-IDDR 309 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee-eccc
Confidence 334444557899999999999999999999999999999998886 88999999999999999999999999865 6766
Q ss_pred cceEEEEeCCCHHH
Q 014217 173 SVPLVVKWADTEKE 186 (428)
Q Consensus 173 ~~~l~v~~a~~~~~ 186 (428)
. |.|.|+.+-..
T Consensus 310 R--IHVDFSQSVsk 321 (479)
T KOG0415|consen 310 R--IHVDFSQSVSK 321 (479)
T ss_pred e--EEeehhhhhhh
Confidence 5 88888865443
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.69 E-value=2.1e-07 Score=68.86 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=65.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhh--cCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC-CCccee
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA-SSPLQV 91 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~-~~~~~~ 91 (428)
.+|+|+|||...|.++|.+++.. .|...-+-+..|..++.+.|||||.|.+.+.|.+..+.++|.+.-... .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998865 356777778888888999999999999999999999999987653332 233344
Q ss_pred ecc
Q 014217 92 KYA 94 (428)
Q Consensus 92 ~~~ 94 (428)
.|+
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 554
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.63 E-value=9.1e-08 Score=89.79 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
+.....-.+.|||.+|...+--.||+.+|++||.|...+|+.+-.+...++|+||.+.+.++|.+||+.||.+.+ .|
T Consensus 398 ekgrs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL-HG-- 474 (940)
T KOG4661|consen 398 EKGRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL-HG-- 474 (940)
T ss_pred cccccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh-cc--
Confidence 344456678999999999999999999999999999999999888888899999999999999999999987764 33
Q ss_pred Ccceeecc
Q 014217 87 SPLQVKYA 94 (428)
Q Consensus 87 ~~~~~~~~ 94 (428)
+.|.|..+
T Consensus 475 rmISVEka 482 (940)
T KOG4661|consen 475 RMISVEKA 482 (940)
T ss_pred eeeeeeec
Confidence 55555443
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.62 E-value=6.9e-08 Score=87.08 Aligned_cols=168 Identities=17% Similarity=0.265 Sum_probs=126.3
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
...+++|++++.+++.+.+...++...|......+........++|++++.|...+.+..+|...... .+.+.....-+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~-~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSK-VLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcc-ccccccccCcc
Confidence 46899999999999999999999999998777777776667889999999999999999999875331 22221111111
Q ss_pred eccCc---------ccccccceEE-EecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHH
Q 014217 92 KYADG---------ELERLEHKLF-IGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (428)
Q Consensus 92 ~~~~~---------~~~~~~~~v~-v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~ 160 (428)
..... .......+++ +++++..++.++|+..|..+|.|..++++... ++..+|+|||.|.+...+..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 11111 0011133455 99999999999999999999999999998776 7789999999999999999998
Q ss_pred HHHcCCccCCCCcceEEEEeCCCH
Q 014217 161 EAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 161 ~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
.. +... +.+. ++.+.+....
T Consensus 245 ~~-~~~~-~~~~--~~~~~~~~~~ 264 (285)
T KOG4210|consen 245 ND-QTRS-IGGR--PLRLEEDEPR 264 (285)
T ss_pred hc-ccCc-ccCc--ccccccCCCC
Confidence 76 4444 4444 3666666543
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=9.9e-08 Score=80.92 Aligned_cols=155 Identities=18% Similarity=0.359 Sum_probs=111.5
Q ss_pred CceEEEeCCCCCCCHHH-H--HHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 14 RVKLFVGQVPKHMTEAQ-L--LAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~-l--~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
-...+++++-..+..+- | -..|+.+-.....+++++.. +.-++++|+.|.....-.++=..-+++++ . ...++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki-~--~~~VR 171 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKI-G--KPPVR 171 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccc-c--Cccee
Confidence 34455666655554443 2 45666666666677777774 67888999999888777766333333322 1 12233
Q ss_pred ee----ccC---cccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHH
Q 014217 91 VK----YAD---GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 162 (428)
Q Consensus 91 ~~----~~~---~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~ 162 (428)
.. |-+ .+....+-+||.+.|..+++.+.|-..|++|-.-...++.+++ +|+++||+||.|.+.+++.+|+..
T Consensus 172 ~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 172 LAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred eccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 22 222 2333346789999999999999999999999888888888887 899999999999999999999999
Q ss_pred HcCCccCCCCc
Q 014217 163 INGKHKMEGSS 173 (428)
Q Consensus 163 l~~~~~~~g~~ 173 (428)
++|.. ++.+.
T Consensus 252 m~gky-Vgsrp 261 (290)
T KOG0226|consen 252 MNGKY-VGSRP 261 (290)
T ss_pred hcccc-cccch
Confidence 99976 66554
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=1.4e-08 Score=91.89 Aligned_cols=156 Identities=23% Similarity=0.414 Sum_probs=118.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
+++|++||.+.++..||+.+|..... ...-.+++. ||+||.+.+..-|.+|++.++++.-+.| ..+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccc
Confidence 57999999999999999999987542 222223332 5999999999999999999999877777 4444444
Q ss_pred cCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Q 014217 94 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (428)
Q Consensus 94 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (428)
+.+. ...++.+.|+|+|+...++.|..++..||.++.+....... ..-..-|+|.+.+.++.|+..|+|.. +....
T Consensus 73 sv~k-kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q-~en~~ 148 (584)
T KOG2193|consen 73 SVPK-KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQ-LENQH 148 (584)
T ss_pred hhhH-HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchH-hhhhh
Confidence 4322 33356799999999999999999999999999887643321 12344578999999999999999987 44444
Q ss_pred ceEEEEeCCCHH
Q 014217 174 VPLVVKWADTEK 185 (428)
Q Consensus 174 ~~l~v~~a~~~~ 185 (428)
+.+.|-..+.
T Consensus 149 --~k~~YiPdeq 158 (584)
T KOG2193|consen 149 --LKVGYIPDEQ 158 (584)
T ss_pred --hhcccCchhh
Confidence 6676665543
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=1e-07 Score=89.86 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=64.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
-+..+|+|-|||..|+.++|+.+|+.||+|..|+.-+. .+|..||+|-+.-+|++|+++|+++++.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35689999999999999999999999999999766444 368999999999999999999999999999988
No 146
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.50 E-value=4.9e-07 Score=78.50 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=68.0
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.+....+|+|.|||+.++++||+++|..||.++.+-+..++ .|++.|.|-|.|...++|..|++.+|+ ..+.| +.+
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG--~~m 154 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG-VALDG--RPM 154 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC-cccCC--cee
Confidence 44556889999999999999999999999988877666666 699999999999999999999999999 55776 445
Q ss_pred eeecc
Q 014217 90 QVKYA 94 (428)
Q Consensus 90 ~~~~~ 94 (428)
++...
T Consensus 155 k~~~i 159 (243)
T KOG0533|consen 155 KIEII 159 (243)
T ss_pred eeEEe
Confidence 44433
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.48 E-value=3e-07 Score=86.49 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=57.1
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHh
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l 76 (428)
......|||+|||.++++.+|+++|+.||.|++..|......++..+||||+|.+.++++.||++-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 334455999999999999999999999999999988776544555589999999999999999883
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=7.8e-07 Score=62.31 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=48.5
Q ss_pred ceEEEeCCCCCCCHH----HHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 343 ANLFIYHIPQEFGDQ----ELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~----~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..|+|.|||.+.+.. .|++++..|| .|.+|. .|.|+|.|.+.+.|.+|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999988754 6777888998 455441 1569999999999999999999999999999999
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 984
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.43 E-value=3.2e-07 Score=82.14 Aligned_cols=85 Identities=27% Similarity=0.474 Sum_probs=78.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEE--------EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
.....+|||.+||..+++++|.++|.++|.|.. |+|.++++|+.+||-|.|.|.++..|++|+.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445689999999999999999999999998843 788899999999999999999999999999999999999
Q ss_pred CeEEEEEEecCCc
Q 014217 411 GKKLKVQLKRDNK 423 (428)
Q Consensus 411 g~~i~v~~a~~~~ 423 (428)
|..|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987664
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.40 E-value=2.2e-07 Score=83.52 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=54.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
-.+|++|.+|+..|...++-+.|..+|+|.+.+.. .+...-++.|+|....+-.-|+.. +|+.+.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 34899999999999999999999999999988874 333445788999988888888875 788876
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.34 E-value=9.1e-07 Score=67.23 Aligned_cols=70 Identities=21% Similarity=0.429 Sum_probs=44.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc-----eeCCeEEEE
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-----QLGGKKLKV 416 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~-----~l~g~~i~v 416 (428)
++.|+|.|++..++.++|++.|+.||.|..|.+..+. ..|+|.|.+++.|+.|+..+.-. .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3789999999999999999999999999999887654 36899999999999999887544 344544444
Q ss_pred E
Q 014217 417 Q 417 (428)
Q Consensus 417 ~ 417 (428)
+
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=1.2e-06 Score=76.47 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=72.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+...+||+|+.+.+|.+++...|+.||.|..+.+.+|+..+.++||+||+|.+.+.+..++. |++.. +.+ +
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~-i~~--~ 170 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE-IPG--P 170 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc-ccc--c
Confidence 4677888999999999999999999999999999999999999888999999999999999999998 77765 443 5
Q ss_pred cceeecc
Q 014217 88 PLQVKYA 94 (428)
Q Consensus 88 ~~~~~~~ 94 (428)
.+.+.+.
T Consensus 171 ~i~vt~~ 177 (231)
T KOG4209|consen 171 AIEVTLK 177 (231)
T ss_pred cceeeee
Confidence 5555443
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.26 E-value=0.00021 Score=63.67 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=64.5
Q ss_pred cceEEEecCCCCCCHHHHHHhccccC--CeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
..++||+||-..+|.+||.+.+...| .+.+++++.+. +|+++|||+|...+....++.++-|-... +.|+. ++..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHGQ~-P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHGQS-PTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecCCC-Ceee
Confidence 45899999999999999999998877 56677777665 88999999999999999999998887766 77774 3444
Q ss_pred EeCCC
Q 014217 179 KWADT 183 (428)
Q Consensus 179 ~~a~~ 183 (428)
.+-+.
T Consensus 158 ~~NK~ 162 (498)
T KOG4849|consen 158 SYNKT 162 (498)
T ss_pred ccchh
Confidence 44433
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.14 E-value=1e-06 Score=79.30 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=105.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCC---CCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
..|-|.||.+++|.+++..+|...|.|.+++|+..... .-....|||.|.+.+++..| ++|.+..+++. ..|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdr--aliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDR--ALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeee--eEEEE
Confidence 38999999999999999999999999999999884432 33456899999999999999 77777655443 11122
Q ss_pred eccCccccc--------------------------------------------------------ccceEEEecCCCCCC
Q 014217 92 KYADGELER--------------------------------------------------------LEHKLFIGMLPKNVS 115 (428)
Q Consensus 92 ~~~~~~~~~--------------------------------------------------------~~~~v~v~nlp~~~t 115 (428)
-+....... ..+++++.+|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 111110000 025789999999999
Q ss_pred HHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014217 116 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (428)
Q Consensus 116 ~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~ 162 (428)
..++.+.|..+|.|...++-... ...+|-+.|........|+..
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHh
Confidence 99999999999999766664433 244677899888888888764
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=4.9e-07 Score=82.04 Aligned_cols=152 Identities=26% Similarity=0.384 Sum_probs=116.4
Q ss_pred ceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
+.+|++||.+.++..+|..+|...-.-..-.++. ..||+||.+.+..-|.+|++.++|..-+.|.. +.+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr--~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKR--QEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCce--eeccchh
Confidence 4689999999999999999998762111111221 26899999999999999999999986666654 5555544
Q ss_pred CHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCC
Q 014217 183 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 262 (428)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (428)
+++.+.
T Consensus 75 ~kkqrs-------------------------------------------------------------------------- 80 (584)
T KOG2193|consen 75 PKKQRS-------------------------------------------------------------------------- 80 (584)
T ss_pred hHHHHh--------------------------------------------------------------------------
Confidence 432221
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPG 342 (428)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (428)
T Consensus 81 -------------------------------------------------------------------------------- 80 (584)
T KOG2193|consen 81 -------------------------------------------------------------------------------- 80 (584)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEE-eeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF-VDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+.+-|+|+|...-++-|..+...||.+..|... .+.++ -..=|+|.+.+.++.|+..|+|..|....+++.|-
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 446789999999999999999999999999654 33322 23457899999999999999999999888887763
No 156
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.01 E-value=8.7e-06 Score=78.92 Aligned_cols=82 Identities=22% Similarity=0.420 Sum_probs=68.5
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCC---CCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK---TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
++....|||+||++.++|+.|...|..||+|.+++++--. ...+.+-|+||-|-+-.+|++|++.|++.-+ ...
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eee
Confidence 4567899999999999999999999999999999987633 2245666999999999999999999998754 236
Q ss_pred cceeeccC
Q 014217 88 PLQVKYAD 95 (428)
Q Consensus 88 ~~~~~~~~ 95 (428)
++++.|.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 77777764
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=7.6e-05 Score=52.53 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=43.9
Q ss_pred ceEEEeCCCCCCCHHHH----HHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 15 VKLFVGQVPKHMTEAQL----LAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l----~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
..|+|.|||-+.+...| +.++..|| .|.+| ..+.|+|.|.+.+.|.+|.+.|++..+++ ..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFG---NKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhccccccc---ceE
Confidence 57999999999987665 56666788 55544 12589999999999999999999876544 455
Q ss_pred eeecc
Q 014217 90 QVKYA 94 (428)
Q Consensus 90 ~~~~~ 94 (428)
.+++.
T Consensus 70 ~v~~~ 74 (90)
T PF11608_consen 70 SVSFS 74 (90)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 55554
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=2.8e-05 Score=59.08 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=39.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~ 79 (428)
+.|.|.|++..++-++|+++|+.||.|..|.+.+... .|||.|.+.+.|+.|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999998887766443 7999999999999999987543
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=3e-05 Score=68.70 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCCHHH------HHHHhhcCCCeEEEEEEeeC-CCCCeeeE--EEEEecCHHHHHHHHHHhcCceeCCeE
Q 014217 343 ANLFIYHIPQEFGDQE------LGNAFQAFGRVLSAKVFVDK-ATGVSKCF--GFVSYESPASAQNAIAMMNGCQLGGKK 413 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~------L~~~F~~~G~i~~v~i~~~~-~~~~~~g~--afV~F~~~e~A~~A~~~l~g~~l~g~~ 413 (428)
.-+||-+|++.+-.|+ =.++|.+||.|.++.|-+.- ..+...+. .||+|.+.|||.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 6789999999886665 24799999999998774321 11111222 399999999999999999999999999
Q ss_pred EEEEEecCC
Q 014217 414 LKVQLKRDN 422 (428)
Q Consensus 414 i~v~~a~~~ 422 (428)
|+..|+-.|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987654
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.87 E-value=6.3e-05 Score=56.15 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=53.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEE-EEeeC------CCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe-
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAK-VFVDK------ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK- 412 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-i~~~~------~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~- 412 (428)
..+.|.|-|.|+. ....+.++|++||+|.+.. +.++. ..-....|.-|+|+++.+|++|++. ||..|+|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4577999999988 4677889999999998774 10000 0011236899999999999999997 99999885
Q ss_pred EEEEEEec
Q 014217 413 KLKVQLKR 420 (428)
Q Consensus 413 ~i~v~~a~ 420 (428)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45566653
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.76 E-value=1e-05 Score=69.27 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=54.3
Q ss_pred HHHHHHhh-cCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecC
Q 014217 357 QELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 421 (428)
Q Consensus 357 ~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~ 421 (428)
|||...|+ +||+|..+.|.... .....|-++|.|...|+|++|++.||++++.|++|.+.+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 56777777 99999998776553 344678899999999999999999999999999999988643
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.75 E-value=1.6e-05 Score=67.86 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=62.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCC--------CCee----eEEEEEecCHHHHHHHHHHhcCce
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT--------GVSK----CFGFVSYESPASAQNAIAMMNGCQ 408 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~--------~~~~----g~afV~F~~~e~A~~A~~~l~g~~ 408 (428)
..-+||++|||+...-..|+++|+.||.|-+|.+...... |.++ -.|+|+|.+-..|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4479999999999999999999999999999999765433 2222 237899999999999999999999
Q ss_pred eCCeE
Q 014217 409 LGGKK 413 (428)
Q Consensus 409 l~g~~ 413 (428)
++|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.75 E-value=7.2e-05 Score=48.97 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHH
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 401 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 401 (428)
+.|-|.|.+.+.. +++..+|..||+|.++.+... +.+.+|+|++..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 6788999987664 566779999999999988622 357999999999999985
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.74 E-value=8.7e-05 Score=64.60 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=61.5
Q ss_pred CCceEEEeCC--CCCCC---HHHHHHHhhcCCCeEEEEEEeeCCCCCe-eeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 341 PGANLFIYHI--PQEFG---DQELGNAFQAFGRVLSAKVFVDKATGVS-KCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 341 ~~~~l~V~nL--p~~~t---~~~L~~~F~~~G~i~~v~i~~~~~~~~~-~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
+..+|.++|+ +..++ ++++.+.|.+||.|..|.|..++..-.. --..||+|.+.++|.+|+-.|||+.|+||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 4456777777 34454 4588899999999999988766421111 1237999999999999999999999999999
Q ss_pred EEEEec
Q 014217 415 KVQLKR 420 (428)
Q Consensus 415 ~v~~a~ 420 (428)
+..|-.
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 987643
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00013 Score=47.74 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHH
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al 73 (428)
+.|-|.|.+.+.. ++|+.+|..||.|..+.+.... -+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 5688999998877 4566799999999988775322 38999999999999985
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.56 E-value=9.4e-05 Score=65.88 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=64.3
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
......-++||+||-|.+|++||.+.+...| .+.+++++.+...|+++|||+|...+...+++-++.|-.+.+
T Consensus 75 s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 75 SSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred cccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 3455667899999999999999999999888 688899999999999999999999999999999998865543
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.47 E-value=0.00073 Score=53.59 Aligned_cols=74 Identities=30% Similarity=0.499 Sum_probs=53.2
Q ss_pred CCCCCceEEEeCCC-----CCCCH----HHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 014217 338 TGPPGANLFIYHIP-----QEFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 408 (428)
Q Consensus 338 ~~~~~~~l~V~nLp-----~~~t~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~ 408 (428)
.+++..||.|+=+. ...-. .+|.+.|+.||++.-+++.-+ .-+|+|.+-++|.+|+. ++|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 34566777777555 11222 378888999999998888644 37999999999999988 69999
Q ss_pred eCCeEEEEEEec
Q 014217 409 LGGKKLKVQLKR 420 (428)
Q Consensus 409 l~g~~i~v~~a~ 420 (428)
+.|+.|+|++.-
T Consensus 94 v~g~~l~i~LKt 105 (146)
T PF08952_consen 94 VNGRTLKIRLKT 105 (146)
T ss_dssp ETTEEEEEEE--
T ss_pred ECCEEEEEEeCC
Confidence 999999999754
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.00045 Score=59.35 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=59.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 409 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l 409 (428)
..|+|.||...++.|.|.+-|+.||+|.+..++.|. .+++++-++|+|...-.|..|.....-.-|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCcc
Confidence 679999999999999999999999999999888884 899999999999999999999998744444
No 169
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.45 E-value=0.00021 Score=64.43 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=69.8
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCcee--------EEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
......+|||-+||..+++.+|.++|..+|.|. .|++.+++.|++.+|-|.|.|.+...|+.|+..++++.+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 366778999999999999999999999998664 377888999999999999999999999999999988764
Q ss_pred CCCCCCcceeecc
Q 014217 82 LPGASSPLQVKYA 94 (428)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (428)
.+ ..++|..+
T Consensus 142 -~g--n~ikvs~a 151 (351)
T KOG1995|consen 142 -CG--NTIKVSLA 151 (351)
T ss_pred -cC--CCchhhhh
Confidence 33 55555544
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00032 Score=66.65 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=62.2
Q ss_pred CceEEEeCCCCC--C----CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CeEE
Q 014217 342 GANLFIYHIPQE--F----GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKL 414 (428)
Q Consensus 342 ~~~l~V~nLp~~--~----t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~-g~~i 414 (428)
..+|.|.|+|-= . -+--|..+|+++|.+....++.+. .|..+||.|++|++..+|..|++.|||+.|+ .++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 478899999741 1 133566889999999999999885 6679999999999999999999999999985 5666
Q ss_pred EEE
Q 014217 415 KVQ 417 (428)
Q Consensus 415 ~v~ 417 (428)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.0059 Score=52.66 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCCCCCCCCCcceeeccCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEE
Q 014217 69 ADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFL 148 (428)
Q Consensus 69 a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV 148 (428)
|..|-..|.+. +..+ +.+++.++- ...|+|.||...++.+.+.+.|+.||+|+...+..+..++..+-++|
T Consensus 7 ae~ak~eLd~~-~~~~--~~lr~rfa~------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v 77 (275)
T KOG0115|consen 7 AEIAKRELDGR-FPKG--RSLRVRFAM------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIV 77 (275)
T ss_pred HHHHHHhcCCC-CCCC--CceEEEeec------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchh
Confidence 45555566554 3444 777777764 25799999999999999999999999999988888888888999999
Q ss_pred EeCCHHHHHHHHHHHcCCc
Q 014217 149 KYETKEQALAALEAINGKH 167 (428)
Q Consensus 149 ~f~~~e~a~~a~~~l~~~~ 167 (428)
.|...-.+.+|...++...
T Consensus 78 ~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREGG 96 (275)
T ss_pred hhhcchhHHHHHHHhccCc
Confidence 9999999999999885433
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.32 E-value=0.0012 Score=46.63 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=45.5
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~ 78 (428)
+......+|+ .|..+...||.++|+.||.|. |.++.|- .|||...+.+.|..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3344556665 999999999999999999887 8888875 799999999999999998753
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.30 E-value=0.0017 Score=43.51 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=45.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhc----CceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHh
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEF----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l 76 (428)
..+|+|+|+. +++.+||+.+|..| + ...|.++.|. .|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999995 47779999999999 5 4569999986 5899999999999999764
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00017 Score=66.32 Aligned_cols=67 Identities=21% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEee---CCC--CCe--------eeEEEEEecCHHHHHHHHHHhcCc
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD---KAT--GVS--------KCFGFVSYESPASAQNAIAMMNGC 407 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---~~~--~~~--------~g~afV~F~~~e~A~~A~~~l~g~ 407 (428)
+.++|.+.|||.+-.-+-|..+|+.+|.|..|+|... +.+ +.+ +-+|+|+|.+.+.|.+|.+.|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6799999999999999999999999999999999865 222 222 457999999999999999988543
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00097 Score=63.53 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=60.6
Q ss_pred ccceEEEecCCCC--CCHHH----HHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Q 014217 101 LEHKLFIGMLPKN--VSEAE----VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (428)
Q Consensus 101 ~~~~v~v~nlp~~--~t~~~----l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (428)
.+.+|+|-|+|.- ...+. |.++|+++|.+..+.++.+..|..+|+.|++|++..+|+.|++.|||..+...+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3678999999842 23333 5578999999999999988877799999999999999999999999998655554
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.10 E-value=0.00042 Score=59.47 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=59.7
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCC--------CCccc----eEEEEeCCHHHHHHHHHHhcCCC
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------RASRG----CCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~~g----~afV~f~~~~~a~~al~~l~~~~ 80 (428)
..-.||+++||+.+...-||++|+.||.|-.|.+-....+ |.+.+ -+||+|.+...|+++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999988877775544 22222 47999999999999999999987
Q ss_pred CCCC
Q 014217 81 TLPG 84 (428)
Q Consensus 81 ~~~~ 84 (428)
+-++
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 6554
No 177
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.065 Score=47.48 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=52.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
...|-|-|+|..- -..|..+|++||+|.+..... + -.|-.|.|.+.-+|++|+.+ ||+.|+|-.+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---n---gNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---N---GNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC---C---CceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 5778888998754 356789999999998875541 2 25899999999999999997 9999988544
No 178
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.98 E-value=0.0021 Score=57.27 Aligned_cols=77 Identities=12% Similarity=0.384 Sum_probs=57.8
Q ss_pred ceEEEeCCCCCCCHHHH------HHHHhhcCceeEEEEEeCCCC-CCccce--EEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 15 VKLFVGQVPKHMTEAQL------LAMFKEFALVDEVNIIKDKTT-RASRGC--CFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l------~~~f~~~g~i~~~~~~~~~~~-~~~~g~--afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
+-+||-+||+.+-.|++ .++|.+||.|..|.+-+.-.. ....+. .||.|.+.++|.+||+...+. +++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs-~~DG- 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS-LLDG- 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc-cccC-
Confidence 56899999999877773 589999999988766553311 222232 499999999999999998776 5666
Q ss_pred CCcceeecc
Q 014217 86 SSPLQVKYA 94 (428)
Q Consensus 86 ~~~~~~~~~ 94 (428)
+.|+..+-
T Consensus 193 -r~lkatYG 200 (480)
T COG5175 193 -RVLKATYG 200 (480)
T ss_pred -ceEeeecC
Confidence 77776654
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.94 E-value=0.00081 Score=64.41 Aligned_cols=81 Identities=25% Similarity=0.252 Sum_probs=66.3
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHhh-cCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee---C
Q 014217 335 SGGTGPPGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---G 410 (428)
Q Consensus 335 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l---~ 410 (428)
+++.......|+|.||---+|.-+|+.++. ..|.|...+| |+ -+..|||.|.+.++|...+.+|||..+ +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 444566779999999988889999999998 5666766644 32 234699999999999999999999987 6
Q ss_pred CeEEEEEEecC
Q 014217 411 GKKLKVQLKRD 421 (428)
Q Consensus 411 g~~i~v~~a~~ 421 (428)
++.|.+.|+..
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 79999998764
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.92 E-value=0.0011 Score=61.00 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=59.3
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeC---CCCC----------CccceEEEEeCCHHHHHHHHHH
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD---KTTR----------ASRGCCFVICPSRQEADKAVNA 75 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~~----------~~~g~afV~f~~~~~a~~al~~ 75 (428)
.++-.+++|.+-|||.+-.-+.|.++|+.+|.|..|+|.+- +... ..+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34568999999999999888999999999999999998876 2221 1356899999999999999988
Q ss_pred hcCC
Q 014217 76 CHNK 79 (428)
Q Consensus 76 l~~~ 79 (428)
++..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8653
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.81 E-value=0.0073 Score=58.17 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=69.4
Q ss_pred ccccceEEEecCCCCCCHHHHHHhcc-ccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEE
Q 014217 99 ERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (428)
Q Consensus 99 ~~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~ 177 (428)
...++.|+|.||-...|.-+|+.++. ..|.|....|..- +..|||.|.+.++|...+.+|+|..+..+....|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34478999999999999999999998 4557776655443 55899999999999999999999987677777799
Q ss_pred EEeCCCHHHH
Q 014217 178 VKWADTEKER 187 (428)
Q Consensus 178 v~~a~~~~~~ 187 (428)
+.|.......
T Consensus 516 adf~~~deld 525 (718)
T KOG2416|consen 516 ADFVRADELD 525 (718)
T ss_pred eeecchhHHH
Confidence 9999776543
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.74 E-value=0.0041 Score=46.50 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=49.4
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEE-EEeCC------CCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN-IIKDK------TTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
..+.+.|.|=|.|+..+ ..|.+.|++||+|.+.. +.++. .......+..|+|.+..+|.+||.. +..++.
T Consensus 3 ~~~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~ 79 (100)
T PF05172_consen 3 QDSETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFS 79 (100)
T ss_dssp -GGCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEET
T ss_pred CcCCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEc
Confidence 34566799999999955 67999999999988764 11100 0112334999999999999999977 444555
Q ss_pred CCCCcceeeccC
Q 014217 84 GASSPLQVKYAD 95 (428)
Q Consensus 84 ~~~~~~~~~~~~ 95 (428)
| ..-+.+.+.+
T Consensus 80 g-~~mvGV~~~~ 90 (100)
T PF05172_consen 80 G-SLMVGVKPCD 90 (100)
T ss_dssp T-CEEEEEEE-H
T ss_pred C-cEEEEEEEcH
Confidence 4 2334455543
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.37 E-value=0.032 Score=39.53 Aligned_cols=56 Identities=21% Similarity=0.478 Sum_probs=42.1
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
+...+|+ +|..+...||.++|+.||.|. |..+.+ ..|||...+.+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 3455665 999999999999999999986 444433 3899999999999999988865
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.34 E-value=0.043 Score=41.89 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=53.1
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~ 82 (428)
......+.+...|+.++-++|..+.+.+- .|..+++++|.. .++-.+.+.|.+.++|....+.+||+.+.
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33345555556666667777776666654 688899999863 47779999999999999999999998763
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.31 E-value=0.0098 Score=50.08 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=47.3
Q ss_pred CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc--CceeCCeEEEEEEecCC
Q 014217 355 GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 355 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--g~~l~g~~i~v~~a~~~ 422 (428)
..+.|+++|..|+.+.....++.- +-..|.|.+.++|.+|...|+ +..+.|..++|.|++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 458899999999999888776653 458999999999999999999 99999999999999544
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.21 E-value=0.029 Score=43.98 Aligned_cols=75 Identities=16% Similarity=0.325 Sum_probs=56.3
Q ss_pred CCCCceEEEeCCCCCC-CHHHH---HHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 339 GPPGANLFIYHIPQEF-GDQEL---GNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~-t~~~L---~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
+++-.||.|+=|..++ ..+|| ...++.||+|.+|-+. |+ --|.|.|++..+|=.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4566888887665554 23444 4556899999999773 32 3499999999999999999865 6678888
Q ss_pred EEEEecC
Q 014217 415 KVQLKRD 421 (428)
Q Consensus 415 ~v~~a~~ 421 (428)
++.|-+.
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8887653
No 187
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.12 E-value=0.021 Score=57.44 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=61.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee--CCeEEEEEEecCC
Q 014217 345 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKVQLKRDN 422 (428)
Q Consensus 345 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l--~g~~i~v~~a~~~ 422 (428)
..+.|.+-..+--.|..+|+.||.|.+++..++- ..|.|+|.+.|.|..|+.+|+|+.+ -|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555556778899999999999999998875 3699999999999999999999986 5888999999875
Q ss_pred c
Q 014217 423 K 423 (428)
Q Consensus 423 ~ 423 (428)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 4
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.06 E-value=0.042 Score=36.91 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=42.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcC---CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAF---GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 404 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 404 (428)
...|+|+|+. +.+.+|++.+|..| ....+|.-+-|. -|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4679999985 57889999999999 134456554443 3789999999999999875
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.75 E-value=0.0034 Score=56.50 Aligned_cols=79 Identities=20% Similarity=0.421 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCCHHHHH---HHhhcCCCeEEEEEEeeCC----CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 343 ANLFIYHIPQEFGDQELG---NAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
.-+||-+|+..+-.+.+. +.|.+||.|.+|.+-.+.. .+.. --++|+|...|+|..|+...+|..++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457888888777554443 6789999999998877541 1111 1279999999999999999999999999988
Q ss_pred EEEecCC
Q 014217 416 VQLKRDN 422 (428)
Q Consensus 416 v~~a~~~ 422 (428)
+.++-.+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877554
No 190
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.69 E-value=0.0063 Score=52.61 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=50.4
Q ss_pred HHHHHhcc-ccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 117 AEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 117 ~~l~~~f~-~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
|++...|. +||.|+++.|..+..-.-.|=+||.|...|+|++|++.||+.- +.|+. |...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G~p--i~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW-YNGRP--IHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc-ccCCc--ceeeecCcC
Confidence 45555666 9999999877665544457889999999999999999999975 88875 666666443
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.57 E-value=0.021 Score=54.71 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=57.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc--CCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc--eeCCeEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 416 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~--~l~g~~i~v 416 (428)
..|.|+|+-||+.+-.|+++.+|.. |-.+++|.+.... + =||+|++..||+.|.++|... .|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4689999999999999999999954 7889999887653 2 399999999999999888433 366776654
Q ss_pred E
Q 014217 417 Q 417 (428)
Q Consensus 417 ~ 417 (428)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 4
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.49 E-value=0.05 Score=45.70 Aligned_cols=81 Identities=10% Similarity=0.157 Sum_probs=51.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc-CCCe---EEEE--EEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC---C
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQA-FGRV---LSAK--VFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG---G 411 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i---~~v~--i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~---g 411 (428)
....|.|++||++.|++++.+.++. ++.- .++. ..........-..|||.|.+.++...-...++|+.|- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4578999999999999999998887 7766 3333 1111111123445999999999999999999998873 2
Q ss_pred --eEEEEEEecC
Q 014217 412 --KKLKVQLKRD 421 (428)
Q Consensus 412 --~~i~v~~a~~ 421 (428)
.+-.|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 4455565543
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.29 E-value=0.13 Score=40.42 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=57.7
Q ss_pred ccccccCceEEEeCCCCCCC-HHH---HHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMT-EAQ---LLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t-~~~---l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
...++...+|.|+=|..++. .+| |...++.||+|.+|.+.-. . .|.|.|.+..+|=.|+.+++.. .
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----q--savVvF~d~~SAC~Av~Af~s~--~- 149 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----Q--SAVVVFKDITSACKAVSAFQSR--A- 149 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----c--eEEEEehhhHHHHHHHHhhcCC--C-
Confidence 34567788999998888873 344 4556778999999866332 2 7999999999999999998764 2
Q ss_pred CCCCcceeeccCc
Q 014217 84 GASSPLQVKYADG 96 (428)
Q Consensus 84 ~~~~~~~~~~~~~ 96 (428)
.+..++..|-..
T Consensus 150 -pgtm~qCsWqqr 161 (166)
T PF15023_consen 150 -PGTMFQCSWQQR 161 (166)
T ss_pred -CCceEEeecccc
Confidence 336677776543
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.25 E-value=0.28 Score=37.54 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=50.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 411 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g 411 (428)
..+.+-..|.-++.++|..+.+.+- .|..++|+++. ..++=.+.++|.+.++|..-...+||+.|..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4445555566667788877777665 45678888875 2355568999999999999999999999854
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.16 E-value=0.11 Score=35.42 Aligned_cols=55 Identities=9% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q 014217 353 EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 416 (428)
Q Consensus 353 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v 416 (428)
.++-++++..+..|+- .+|..|+ + || ||.|.+.++|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677999999999953 3355554 3 54 99999999999999999999998888765
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.12 E-value=0.018 Score=48.32 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=45.3
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhh-cCce---eEEEEEeCCCC-CC-ccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKE-FALV---DEVNIIKDKTT-RA-SRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i---~~~~~~~~~~~-~~-~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
.....+|.||+||++.||+++.+.++. ++.- ..+.-...... +. .-.-|||.|.+.+++....+.+++..+.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 455679999999999999999997766 5543 33332222211 11 223699999999999999999887655443
No 197
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.96 E-value=0.059 Score=47.47 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=45.7
Q ss_pred HHHHHhccccCCeEEEEEccCCCC--CcccEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Q 014217 117 AEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (428)
Q Consensus 117 ~~l~~~f~~~G~v~~v~i~~~~~g--~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (428)
+++++.+.+||.|..|.|...+.- ...--.||+|...++|.+|+-.|||.. |.|+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGGr~ 358 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGGRV 358 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-eccee
Confidence 468889999999999988766421 123457999999999999999999976 88886
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.92 E-value=0.015 Score=54.52 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=61.1
Q ss_pred CCceEEEeCCCCCC-CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+.+.+-+.-.|+.. +.++|..+|.+||.|..|.|-... --|.|+|.+..+|-.|-. .++..|++|.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 44666777677665 678999999999999999875442 248999999999977766 4899999999999998
Q ss_pred cCC
Q 014217 420 RDN 422 (428)
Q Consensus 420 ~~~ 422 (428)
+..
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 764
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.66 E-value=0.053 Score=53.33 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=62.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+..+|||+|+.+.+..+=+..+...+|.|.+++... |||..|..+.-+.+|+..++-..++|..+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 568999999999999999999999999999887643 8999999999999999999999999888876653
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.19 E-value=0.2 Score=47.10 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=61.1
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~ 82 (428)
+..+..|.|-.+|--+|-.||..|+..+- .|.++++++|.. .++-.+.+.|.+.++|...-+.+||+.+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 33389999999999999999999998765 799999999764 36678999999999999999999998763
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.21 E-value=0.37 Score=45.38 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=58.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 411 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g 411 (428)
++.|.|-.+|-.++-.||..|+..+- .|.+++|++|..- ++=.++|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999997654 6788999987532 33458999999999999999999999864
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.92 E-value=0.35 Score=46.73 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=50.0
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhh--cCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
.....|-|.|+-||.++-+|+|+.+|+. |-.+.+|.+..+.. =||.|++..||+.|...|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHH
Confidence 4455566778999999999999999975 55788898877653 4999999999999987764
No 203
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.41 E-value=0.3 Score=39.04 Aligned_cols=73 Identities=16% Similarity=0.369 Sum_probs=48.8
Q ss_pred cccceEEEecCC-----CCCCH----HHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 100 RLEHKLFIGMLP-----KNVSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 100 ~~~~~v~v~nlp-----~~~t~----~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
+.+.+|.|.-+. ...-. .+|.+.|+.||.+.-+++..+ .-+|+|.+-++|-+|+. ++|.. +.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~-v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQ-VN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSE-ET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcE-EC
Confidence 335677776555 11222 367788999999988887744 68999999999999996 88887 77
Q ss_pred CCcceEEEEeCCC
Q 014217 171 GSSVPLVVKWADT 183 (428)
Q Consensus 171 g~~~~l~v~~a~~ 183 (428)
|+. +.|+...+
T Consensus 96 g~~--l~i~LKtp 106 (146)
T PF08952_consen 96 GRT--LKIRLKTP 106 (146)
T ss_dssp TEE--EEEEE---
T ss_pred CEE--EEEEeCCc
Confidence 876 55555544
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.11 E-value=0.73 Score=46.97 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=58.1
Q ss_pred EEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 106 FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 106 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
.+.|.+-..+-.-|..+|.+||.|.+.+.+++ -..|.|.|.+.+.|..|.++|+|.... -...|.+|.+|+.-
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs-~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVS-VTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCccc-ccCCceeEEecccc
Confidence 34444556777789999999999999999887 449999999999999999999998743 23346788888653
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.00 E-value=0.11 Score=37.65 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=42.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccCc--------ccccccceEEEecCCCCCCHHHHHHhcc
Q 014217 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG--------ELERLEHKLFIGMLPKNVSEAEVSALFS 124 (428)
Q Consensus 59 afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~v~nlp~~~t~~~l~~~f~ 124 (428)
|.|.|.++.=|++.+++-.....+.+....++++...- ......++|.|+|+|...++|+|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999887333222333223333332210 1111257899999999999999997543
No 206
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.68 E-value=0.051 Score=47.40 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=54.2
Q ss_pred CCceEEEeCCCCCC------------CHHHHHHHhhcCCCeEEEEEEe-e----CCCCCeee-----E---------EEE
Q 014217 341 PGANLFIYHIPQEF------------GDQELGNAFQAFGRVLSAKVFV-D----KATGVSKC-----F---------GFV 389 (428)
Q Consensus 341 ~~~~l~V~nLp~~~------------t~~~L~~~F~~~G~i~~v~i~~-~----~~~~~~~g-----~---------afV 389 (428)
.+.||++.+||-.| +++.|+..|..||.|..|.|+. | ..+|+..| | |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 45788888887654 5788999999999999998863 1 12444433 3 245
Q ss_pred EecCHHHHHHHHHHhcCcee----CC----eEEEEEEecCC
Q 014217 390 SYESPASAQNAIAMMNGCQL----GG----KKLKVQLKRDN 422 (428)
Q Consensus 390 ~F~~~e~A~~A~~~l~g~~l----~g----~~i~v~~a~~~ 422 (428)
+|..----..|+.+|-|..+ +| -.++|+|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 55544455567777777654 22 46777777664
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.64 E-value=0.77 Score=32.36 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhhcCCCe-----EEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 352 QEFGDQELGNAFQAFGRV-----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 352 ~~~t~~~L~~~F~~~G~i-----~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
..++..+|..+++.-+.| -++.|.. .|+||+-... .|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467888899988777544 4566632 2789988765 778899999999999999999875
No 208
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.19 E-value=0.18 Score=41.43 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=57.5
Q ss_pred CCceEEEeCCCCCC-----CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe-EE
Q 014217 341 PGANLFIYHIPQEF-----GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KL 414 (428)
Q Consensus 341 ~~~~l~V~nLp~~~-----t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~-~i 414 (428)
-..++++.++...+ ......++|..|.+..-..+++. .++..|.|.+++.|..|...+|++.|.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 45678888887765 23456677776665544444444 35678999999999999999999999988 88
Q ss_pred EEEEecCCc
Q 014217 415 KVQLKRDNK 423 (428)
Q Consensus 415 ~v~~a~~~~ 423 (428)
+.-+++...
T Consensus 83 k~yfaQ~~~ 91 (193)
T KOG4019|consen 83 KLYFAQPGH 91 (193)
T ss_pred EEEEccCCC
Confidence 888887643
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.77 E-value=0.81 Score=40.84 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=47.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
..=|-|-|+|+.-. ..|..+|++||.|.+...- ++.-+-+|+|.+..+|.+||.. +..++.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk--ng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK--NGTIIDG 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh--cCeeecc
Confidence 56678889998766 5678899999998765432 2234999999999999999987 5556655
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.81 E-value=1.3 Score=30.31 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCC
Q 014217 25 HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (428)
Q Consensus 25 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~ 82 (428)
.++-+|++.-+..|+-. +|..|+ || -||.|.+..+|+++....++..++
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEE
Confidence 56889999999999842 344454 44 699999999999999998877543
No 211
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=88.88 E-value=1 Score=34.88 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=34.3
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 014217 343 ANLFIYHIPQE---------FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 404 (428)
Q Consensus 343 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 404 (428)
-++.|-|++.+ .+.++|.+.|+.|..+ +++...++ ..++|+++|+|.+......-...|
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 56778888543 3568999999999876 46666665 468999999999877655533334
No 212
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.02 E-value=23 Score=31.96 Aligned_cols=150 Identities=15% Similarity=0.237 Sum_probs=93.7
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCC-------CCCccceEEEEeCCHHHHHHHHH----HhcCCC-
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT-------TRASRGCCFVICPSRQEADKAVN----ACHNKK- 80 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~-------~~~~~g~afV~f~~~~~a~~al~----~l~~~~- 80 (428)
..|.|.+.|+..+++-..+..-|-+||+|++|.++.+.. .........+-|-+.+.+...-. +|..-+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999761 13445688999999887765522 221100
Q ss_pred CCCCCCCcceeecc-----Ccc----------------------cccccceEEEecCCCCCCHHHHH-H---hccccC--
Q 014217 81 TLPGASSPLQVKYA-----DGE----------------------LERLEHKLFIGMLPKNVSEAEVS-A---LFSIYG-- 127 (428)
Q Consensus 81 ~~~~~~~~~~~~~~-----~~~----------------------~~~~~~~v~v~nlp~~~t~~~l~-~---~f~~~G-- 127 (428)
-+. ...+.+.+- ... .....+.|.|.- -..+.++++. + ++..-+
T Consensus 94 ~L~--S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 94 KLK--SESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred hcC--CcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCc
Confidence 011 122222111 100 011145666643 3445444433 2 333333
Q ss_pred --CeEEEEEccCC---CCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 128 --TIKDLQILRGS---QQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 128 --~v~~v~i~~~~---~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
.++.|.++... ..-+..||.++|-+...|.+++..+..
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 34567665433 334578999999999999999998873
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.69 E-value=0.75 Score=41.84 Aligned_cols=70 Identities=19% Similarity=0.411 Sum_probs=51.2
Q ss_pred ceEEEecCCCCCCHHHHH---HhccccCCeEEEEEccCCC---C-CcccEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Q 014217 103 HKLFIGMLPKNVSEAEVS---ALFSIYGTIKDLQILRGSQ---Q-TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~---g-~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (428)
+-+|+-+|+.....+.+. +.|..||.|.+|.+..+.. + -....+||+|...|+|..||...+|.. .+|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~-~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV-DDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH-hhhhh
Confidence 456777888766444443 6889999999998877552 1 112458999999999999999988854 66664
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.59 E-value=1.6 Score=36.88 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=42.8
Q ss_pred CCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHc--CCccCCCCcceEEEEeC
Q 014217 114 VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLVVKWA 181 (428)
Q Consensus 114 ~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~--~~~~~~g~~~~l~v~~a 181 (428)
-..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...|+ +.. +.|.. +.+.++
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~-~~g~~--l~~yf~ 68 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTS-FNGKR--LRVYFG 68 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSE-ETTEE---EEE--
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccc-cCCCc--eEEEEc
Confidence 356789999999998887777754 4578999999999999999988 665 66665 677666
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.36 E-value=1.5 Score=31.87 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHh
Q 014217 341 PGANLFIYHIPQEFGDQELGNAF 363 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F 363 (428)
..++|.|.|||...++|+|++..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45899999999999999998765
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.75 E-value=1.2 Score=42.41 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=56.4
Q ss_pred cCceEEEeCCCCCC-CHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 13 ERVKLFVGQVPKHM-TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 13 ~~~~l~v~nLp~~~-t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
+.+.|-+.-.|+.. |.++|...|.+||.|.+|.+-... --|.|.|.+..+|-+|-. .++. .+.+ +.+++
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~a-vlnn--r~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGA-VLNN--RFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccc-eecC--ceeEE
Confidence 45666666777665 788999999999999999875553 269999999999977743 3343 3444 88888
Q ss_pred eccCccc
Q 014217 92 KYADGEL 98 (428)
Q Consensus 92 ~~~~~~~ 98 (428)
.|.++..
T Consensus 441 ~whnps~ 447 (526)
T KOG2135|consen 441 FWHNPSP 447 (526)
T ss_pred EEecCCc
Confidence 8887643
No 217
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=75.65 E-value=6.6 Score=26.28 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHhhcCceeEEE
Q 014217 29 AQLLAMFKEFALVDEVN 45 (428)
Q Consensus 29 ~~l~~~f~~~g~i~~~~ 45 (428)
.+||++|+.+|+|.-+-
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 67999999999987443
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.24 E-value=5 Score=35.97 Aligned_cols=60 Identities=13% Similarity=0.313 Sum_probs=48.5
Q ss_pred ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC--------CCCcccEEEEEeCCHHHHHH
Q 014217 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--------QQTSKGCAFLKYETKEQALA 158 (428)
Q Consensus 99 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--------~g~~~g~afV~f~~~e~a~~ 158 (428)
.-..+.|.+.|+...++...+..-|-+||+|+.|.++.+. +........+.|-+.+.|-.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 3346789999999999999999999999999999998664 22234678899999988754
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.55 E-value=13 Score=36.57 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=62.5
Q ss_pred CCCCCceEEEeCCC-CCCCHHHHHHHhhcC----CCeEEEEEEeeCC----------CC---------------------
Q 014217 338 TGPPGANLFIYHIP-QEFGDQELGNAFQAF----GRVLSAKVFVDKA----------TG--------------------- 381 (428)
Q Consensus 338 ~~~~~~~l~V~nLp-~~~t~~~L~~~F~~~----G~i~~v~i~~~~~----------~~--------------------- 381 (428)
......+|-|-||. ..+..+||.-+|+.| |.|.+|.|..... +|
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 35567899999997 568899999998765 4789999976320 11
Q ss_pred ----------------CeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 382 ----------------VSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 382 ----------------~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+.-=||.|+|.+.+.|.+......|..|+..-..+.+.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 11236999999999999999999999998665555543
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.13 E-value=3.3 Score=33.78 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHhh-cCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee-eccCccc----
Q 014217 25 HMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV-KYADGEL---- 98 (428)
Q Consensus 25 ~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~-~~~~~~~---- 98 (428)
..+-..|...+.. ++....+.+..-. .++..++|.+.+++.++++. +...+.+ ..+.+ .|.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~--~p~~~~~--~~~~l~~W~~~~~~~~~ 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG--GPWNFNG--HFLILQRWSPDFNPSEV 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec--ccccccc--cchhhhhhccccccccc
Confidence 3566667666654 4433233333322 25899999999999999875 4333433 33333 2321111
Q ss_pred --ccccceEEEecCCCC-CCHHHHHHhccccCCeEEEEEccC
Q 014217 99 --ERLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRG 137 (428)
Q Consensus 99 --~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~ 137 (428)
....--|.|.|||.. .+++-++.+.+.+|.+..+.....
T Consensus 99 ~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 99 KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 111334778899987 688889999999999987776544
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.34 E-value=21 Score=24.96 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=34.6
Q ss_pred CCCCHHHHHHhccccCCe-----EEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 112 KNVSEAEVSALFSIYGTI-----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 112 ~~~t~~~l~~~f~~~G~v-----~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
..++..+|..++...+.| -.|.|... |+||+-.. +.|..+++.|++.. +.|+. +.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~-~~gk~--v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKK-IKGKK--VRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT---SSS------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCC-CCCee--EEEEE
Confidence 357888999988877544 46777644 89999885 58888999999887 77776 55544
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.52 E-value=12 Score=35.01 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=46.7
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHH
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 75 (428)
=...|-|.|+|.....+||...|+.|+ .--.|+++-|. .||-.|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 346788999999888889999999887 45568888875 799999999999999865
No 223
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=65.43 E-value=5.7 Score=32.81 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=43.6
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCC-CCccceEEEEeCCHHHHHHHHHHh
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNAC 76 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~al~~l 76 (428)
..+++|.. |.+...++|.+|-+ |.+..+...+.... ...+|-.||.|.+.++|..+++.-
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 34667776 55555667777776 77877776664421 257899999999999999988774
No 224
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=65.14 E-value=7 Score=39.10 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=57.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
....+|||+|+...+..+-++.+...+|-|....... |+|+.|.......+|+..++... ++|..+-..+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~-~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELN-IDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccC-CCcchhhccc
Confidence 3467999999999999999999999999987665543 99999999999999999888765 7777643333
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.55 E-value=9.3 Score=29.60 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=29.3
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHH
Q 014217 16 KLFVGQVPKH---------MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEAD 70 (428)
Q Consensus 16 ~l~v~nLp~~---------~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~ 70 (428)
++.|.|+|.. ++.++|++.|+.|.+++ ++...++. -++|++.|+|...-.--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHH
Confidence 4566677543 35678999999999776 66555542 48899999999865443
No 226
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.67 E-value=15 Score=25.34 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCCc
Q 014217 357 QELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 423 (428)
Q Consensus 357 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~~ 423 (428)
++|.+-|...| .|..++-+..+.+....-.-||+.+...+.. +.++=..+.+..|.|+..+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCCCC
Confidence 57788888888 7788877777667777778899998776633 3445557889998888766543
No 227
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=63.39 E-value=0.95 Score=43.88 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=57.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
...|+|+++|++++++-.+|..+|+.+..+.++-+..+.....-.-+++|.|+..-.-..|..+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 356999999999999999999999999888887664332222334467899997777777888888887755443
No 228
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.26 E-value=31 Score=34.20 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=60.4
Q ss_pred cceEEEecCCCC-CCHHHHHHhcccc----CCeEEEEEccCCC-----------CC------------------------
Q 014217 102 EHKLFIGMLPKN-VSEAEVSALFSIY----GTIKDLQILRGSQ-----------QT------------------------ 141 (428)
Q Consensus 102 ~~~v~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~-----------g~------------------------ 141 (428)
.++|-|.|+..+ +..++|.-+|+.| |.|++|.|+...- |.
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 567888899864 7889999998876 5899998865321 11
Q ss_pred -------------cccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 142 -------------SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 142 -------------~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
..-||.|+|.+.+.|..+...|+|.. +......+.+.|..
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E-fEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE-FESSANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce-eccccceeeeeecC
Confidence 11389999999999999999999987 65555456666654
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.50 E-value=50 Score=23.42 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=41.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 014217 345 LFIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 404 (428)
Q Consensus 345 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 404 (428)
-|+-.++.+.+..+++..++. || .|.+|....-+ .+. --|||++..-++|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--eEEEEEECCCCcHHHHHHhh
Confidence 455557889999999988865 67 67777766554 332 34999999998888766554
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=55.72 E-value=56 Score=23.63 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=41.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 014217 345 LFIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 404 (428)
Q Consensus 345 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 404 (428)
-|.--++.+.+..++++.++. || .|.+|....-+ .+. --|+|++...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--EEEEEEeCCCCcHHHHHHhh
Confidence 344446888999999999865 77 67888776554 333 34999999999988876554
No 231
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=54.54 E-value=17 Score=25.00 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=43.3
Q ss_pred HHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccC
Q 014217 29 AQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 95 (428)
Q Consensus 29 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 95 (428)
++|++-|...| +|.++.-++++.++...-..||+.....+...++.. +.+++ ..+.+.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I----k~l~~--~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI----KTLCG--QRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh----HhhCC--eEEEEecCC
Confidence 57888999999 888999888887778888999999888665444332 22443 445555543
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=53.59 E-value=38 Score=30.28 Aligned_cols=52 Identities=10% Similarity=0.239 Sum_probs=38.4
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEEEeCCCCCCccceEEEEeCCHH
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQ 67 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afV~f~~~~ 67 (428)
+.....-|+++|||.++--.||+.-+.+-+. ..++.+ ..+.|-||+-|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4455577999999999999999999887762 223322 336678999998753
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.99 E-value=51 Score=31.09 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=45.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 403 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 403 (428)
+-..+|-|.|+|...-.+||...|+.|++=..-..++|. ..||-.|.+...|..|+..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 345789999999999999999999999864322223443 2699999999999999986
No 234
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=48.27 E-value=17 Score=31.52 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=31.5
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeE
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE 43 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~ 43 (428)
+........+||+-|+|..+|++-|.++.+.+|-+..
T Consensus 33 e~s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 33 EHSNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 3456677889999999999999999999999995553
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=47.96 E-value=2e+02 Score=25.98 Aligned_cols=49 Identities=4% Similarity=0.046 Sum_probs=35.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHH
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 395 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e 395 (428)
.+-|++.||+.++--.||+..+..-|-+- .+|... .+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeee----cCCcceeEecCCcc
Confidence 36699999999999999999998776332 222222 13567999997654
No 236
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.05 E-value=8.4 Score=36.14 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=52.8
Q ss_pred cccCceEEEeCCCCCCCHH--------HHHHHHhh--cCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHH
Q 014217 11 SEERVKLFVGQVPKHMTEA--------QLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~--------~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~ 74 (428)
....+.+|+.+.....+.+ ++..+|.. .+++..++..++.....++|..|++|...+.+++++.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445778888888766555 89999999 6788889888888667788999999999999999974
No 237
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=46.27 E-value=43 Score=23.06 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=44.1
Q ss_pred HHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 357 QELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 357 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
++|.+-|...| .+..++-+..+.+..+-..=+|+.....+-.. .|+=..|+|++|.|+-...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888888 77888888776656666777888876543332 45556688999888765544
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.09 E-value=48 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=17.0
Q ss_pred HHHHHhccccCCeEEEEEccC
Q 014217 117 AEVSALFSIYGTIKDLQILRG 137 (428)
Q Consensus 117 ~~l~~~f~~~G~v~~v~i~~~ 137 (428)
.+|+++|+..|+|.-+.+-..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999987766443
No 239
>PRK11901 hypothetical protein; Reviewed
Probab=43.95 E-value=2.7e+02 Score=25.87 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEE--EecCHHHHHHHHHHhc
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFV--SYESPASAQNAIAMMN 405 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV--~F~~~e~A~~A~~~l~ 405 (428)
....+|-|-.+ ..++.|..|....+ +..++++.....|+.. |..| .|.+.++|+.|+..|-
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 34466666554 35888888888875 5567777655455544 4333 5889999999999874
No 240
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=42.68 E-value=19 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=29.6
Q ss_pred CceEEEeCCCCC-CCHHHHHHHhhcCCCeEEEEEE
Q 014217 342 GANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVF 375 (428)
Q Consensus 342 ~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~ 375 (428)
..-|.|.|||.. ++++-|+.+-+.+|.+.++...
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 477889999976 6899999999999999998764
No 241
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=39.80 E-value=40 Score=28.06 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCC--CcccEEEEEeCCHHHHHHHHHH
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEA 162 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g--~~~g~afV~f~~~e~a~~a~~~ 162 (428)
.++++.. +.+...++|.++-+ |.+..+.+.+-..+ ..+|..||+|.+.+.|...++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4566665 44444455555555 78888888766555 5689999999999999987764
No 242
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.50 E-value=6.2 Score=38.56 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=49.9
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCc
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~ 167 (428)
.+.++++|++++++-.+|..+++.+-.+..+.+.... ......+++|.|+---.-..|+.+||+-.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 4678999999999999999999999877776665443 22345789999987666666666666543
No 243
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.59 E-value=53 Score=22.79 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=21.8
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 385 CFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 385 g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36899999999999999988766553
No 244
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.00 E-value=4.2e+02 Score=28.01 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.3
Q ss_pred CHHHHHHhcccc
Q 014217 115 SEAEVSALFSIY 126 (428)
Q Consensus 115 t~~~l~~~f~~~ 126 (428)
.++|+.++-.++
T Consensus 363 ~e~Dl~el~~rl 374 (1102)
T KOG1924|consen 363 KEDDLEELSGRL 374 (1102)
T ss_pred hhhhHHHHHhHH
Confidence 344444444443
No 245
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.91 E-value=6.4e+02 Score=26.72 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=9.7
Q ss_pred CCceEEEeCCCCCCCHHHHH
Q 014217 341 PGANLFIYHIPQEFGDQELG 360 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~ 360 (428)
+..+.||+-=....+.++|.
T Consensus 640 s~~cFWvkv~Edk~en~dlf 659 (1102)
T KOG1924|consen 640 SENCFWVKVNEDKLENDDLF 659 (1102)
T ss_pred CccceeeecchhhccchHHH
Confidence 34566666434444444443
No 246
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.75 E-value=62 Score=30.45 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEEEeCCCCC--CccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTR--ASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
...-.+|.|++||+..+++++.+-..++- .+....+.+....- .-.+.|||.|...++.....+.+++-.++..
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 34567899999999999999998887754 23323333211111 1245899999999998888777766555444
No 247
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.30 E-value=63 Score=30.41 Aligned_cols=70 Identities=10% Similarity=0.207 Sum_probs=48.0
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCC-eEEEEEccCCCC---CcccEEEEEeCCHHHHHHHHHHHcCCccCCC
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~g---~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g 171 (428)
...|.|.+||+..+++++.+-...+-. +....+.....+ .-.+.|||.|...++........+|..+++.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 356889999999999999988877642 233333322211 2247899999999997777777777654443
No 248
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.87 E-value=3e+02 Score=22.27 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=43.2
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhc---CceeEEEEEeCCCC---------CCccc-eEEEEeCCHHHHH
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEF---ALVDEVNIIKDKTT---------RASRG-CCFVICPSRQEAD 70 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~---g~i~~~~~~~~~~~---------~~~~g-~afV~f~~~~~a~ 70 (428)
.+..+|++.-+..-++|++.++..+.= +.+.+|++-+.+.. ...++ |-+|.|.+-....
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 344799999999999999999999874 46777777665432 12334 8899998865543
No 249
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.27 E-value=1.8e+02 Score=19.30 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=33.4
Q ss_pred CHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 014217 355 GDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 409 (428)
Q Consensus 355 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l 409 (428)
.-.++.++|++.| .|.++.+.... + ++...+.+.+.+.|.++++. +|..+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~--~--~~~~rl~~~~~~~~~~~L~~-~G~~v 64 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS--E--FGILRLIVSDPDKAKEALKE-AGFAV 64 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC--C--CCEEEEEECCHHHHHHHHHH-CCCEE
Confidence 3477888888877 67787764432 2 36666777777777777765 55543
No 250
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=28.21 E-value=1.5e+02 Score=20.42 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHH
Q 014217 29 AQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADK 71 (428)
Q Consensus 29 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 71 (428)
++|++-|.+.| ++..++.+...+++.+.-..||+.....+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~ 45 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE 45 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc
Confidence 46888999999 89999999888877777788888877654444
No 251
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.75 E-value=1.8e+02 Score=18.97 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=40.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCH----HHHHHHHHH
Q 014217 344 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP----ASAQNAIAM 403 (428)
Q Consensus 344 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~----e~A~~A~~~ 403 (428)
|+.|.||.-.--...+...++..-.|.++.+-... +.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57788887777778899999999899998885442 5688999744 555556655
No 252
>PRK11901 hypothetical protein; Reviewed
Probab=27.61 E-value=78 Score=29.26 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=38.5
Q ss_pred ceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEE--EeCCHHHHHHHHHHHcC
Q 014217 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFL--KYETKEQALAALEAING 165 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV--~f~~~e~a~~a~~~l~~ 165 (428)
.+|.|..+ .+++.|..|.+.++ +..++++... +|+ ..|..| .|.+.++|+.|+..|-.
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 35666554 55788888888876 3445555433 332 345544 78999999999988754
No 253
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.95 E-value=50 Score=19.47 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhhcC
Q 014217 24 KHMTEAQLLAMFKEFA 39 (428)
Q Consensus 24 ~~~t~~~l~~~f~~~g 39 (428)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998765
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=12 Score=35.47 Aligned_cols=79 Identities=4% Similarity=-0.130 Sum_probs=58.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
...++..++...+++++.-+|..||.|..+.+-+.-+.+...-.+||.-.+. +|..++..+--..+.|..+++.+++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchh
Confidence 3457788899999999999999999998887776656677777788877653 456666665544566777777776543
No 255
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.38 E-value=1.6e+02 Score=21.35 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=29.3
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee--CCeEEEEEEecCCc
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKVQLKRDNK 423 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l--~g~~i~v~~a~~~~ 423 (428)
.|.+|+|..-...|+-+|+|-|.|.+ . -.++|..+ +..-+.|.+-..+.
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd------~-f~I~~ikVieg~~GlFVaMPs~k~ 52 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD------C-FVIHDIKVIEGEKGLFVAMPSRKS 52 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT------T-EEEEEEEEEEETTEEEEE--EEE-
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC------E-EEEEeEEEEECCCCcEEECCCcCC
Confidence 46788887766669999999999987 1 22344443 23446666554443
No 256
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.08 E-value=2.4e+02 Score=19.96 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=42.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhh-cC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHH
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 75 (428)
.-|+=.++.+++..+|++.++. || .|.+|..+.-+. .-.=|||.+...++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 3556678899999999999987 56 677777666542 334699999999998877544
No 257
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.48 E-value=96 Score=27.90 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=25.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEE
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNII 47 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~ 47 (428)
.....|+||||+++..=|..++...-.+....+|
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4567899999999999999999766555433333
No 258
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.77 E-value=3.5e+02 Score=21.32 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=47.6
Q ss_pred ceEEEeCCCCC---CCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 343 ANLFIYHIPQE---FGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 343 ~~l~V~nLp~~---~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..|-|++.... .+...+.+....-| .+.++.. +. +-..|.|.+.++-.+|.+.|...-=++-.|-+.+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--EN------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eC------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 45666655333 46778888888876 3344433 22 2478999999999999998865554566777777
Q ss_pred ec
Q 014217 419 KR 420 (428)
Q Consensus 419 a~ 420 (428)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 66
No 259
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.66 E-value=3e+02 Score=20.75 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHH
Q 014217 30 QLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (428)
Q Consensus 30 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~ 74 (428)
+|..+++.+| |.+=.|+.|..+ +.-||++++.+.+..-++|.
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 4677888898 676677777643 55699999996666666554
No 260
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.10 E-value=1.3e+02 Score=21.77 Aligned_cols=56 Identities=7% Similarity=0.181 Sum_probs=41.2
Q ss_pred EEecCCCCCCHHHHHHhccc-cC-CeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHH
Q 014217 106 FIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (428)
Q Consensus 106 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l 163 (428)
|.=.+....+..+|++.++. || .|.+|.....+.+ ..-|||++..-++|...-..+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 33357788999999999986 45 6667766555432 347999999999988876554
No 261
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.83 E-value=3.1e+02 Score=22.22 Aligned_cols=55 Identities=9% Similarity=0.326 Sum_probs=37.6
Q ss_pred EEeCCCCCCCHHHHHHHhhc-CC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q 014217 346 FIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 403 (428)
Q Consensus 346 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 403 (428)
|+--++...+..+|+..++. |+ .|.+|..+.-+ .|.- -|||.+....+|......
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCce--EEEEEECCCCcHHHHHHh
Confidence 44446788899999988865 76 56777665544 3333 489999888877654443
No 262
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.55 E-value=1.5e+02 Score=27.56 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=34.5
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccCcccccccceEEEecCCCCCCHHHHHHhcc
Q 014217 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS 124 (428)
Q Consensus 59 afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~ 124 (428)
|||.|.+..+|..|++.+.... .....+..+- +.+-|.=.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~AP-----eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPAP-----EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeCC-----CcccccccccCCChHHHHHHHHHH
Confidence 7999999999999999765432 1333333321 123355567766666666655443
No 263
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.53 E-value=1.9e+02 Score=21.42 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=20.3
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecC
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYES 393 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~ 393 (428)
.|.+|+|.+-...|+-+|+|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777776655578899999999987
No 264
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.28 E-value=92 Score=28.98 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCHH
Q 014217 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (428)
Q Consensus 146 afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~ 185 (428)
|||+|++..+|..|.+.+.... ... +.+..|....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~---~~~--~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR---PNS--WRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC---CCC--ceEeeCCCcc
Confidence 7999999999999999766533 222 5777776554
No 265
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=22.66 E-value=2.7e+02 Score=19.34 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 014217 29 AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 29 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
.++++.+..+| +...++.-.. .-++.|+.+.+.+++.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG----~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG----GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS----SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC----CCCeEEEEECCHHHHHHHHHHHH
Confidence 45677888898 5445553321 13588888889999999888763
No 266
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=22.62 E-value=3.1e+02 Score=19.99 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 014217 356 DQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 405 (428)
Q Consensus 356 ~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 405 (428)
.+.++++++..| .+.+......+ --....+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHHH
Confidence 456778887777 67777776544 33678999999999988776554
No 267
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.42 E-value=37 Score=32.09 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=48.0
Q ss_pred CceEEEeCCCCCCC--------HHHHHHHhhc--CCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHH
Q 014217 342 GANLFIYHIPQEFG--------DQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 401 (428)
Q Consensus 342 ~~~l~V~nLp~~~t--------~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 401 (428)
-+.+|+.+++..-+ .+++...|.. .+.+..+...++......+|-.|++|+....|++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 37788888876543 4599999988 677888887777656678888999999999999886
No 268
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=21.89 E-value=3.5e+02 Score=23.19 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=36.7
Q ss_pred CHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 27 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
+.++.++++..++.-. .+++. .|...|-+.+...+.++|..+++.+-....++
T Consensus 25 ~~~~A~~~l~~~~~p~--~ViKa--dGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY--VVIKA--DGLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp SHHHHHHHHHHHSSSE--EEEEE--SSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CHHHHHHHHHhcCCCc--eEEcc--CCCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 6788889998887432 23342 25555667788899999999999875433343
No 269
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.88 E-value=5.1e+02 Score=23.14 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=37.5
Q ss_pred eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC-CCCcceeeccCcccccccceEEEecCCC
Q 014217 41 VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPK 112 (428)
Q Consensus 41 i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~nlp~ 112 (428)
|..+++-+... ....+--+..+.+.++|..++..+.+..++-. ..+.+.. +.. ......+++++-||.
T Consensus 94 ipylR~eRp~~-~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~-f~~--~~~~~~r~~~RvLp~ 162 (249)
T PF02571_consen 94 IPYLRFERPSW-QPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTGSKNLPP-FVP--APLPGERLFARVLPT 162 (249)
T ss_pred cceEEEEcCCc-ccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHH-Hhh--cccCCCEEEEEECCC
Confidence 44456666543 22223459999999999999988763333222 2222221 111 122245677777765
No 270
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.87 E-value=98 Score=20.92 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCceeEEEEEeCCCCCCccceEEE
Q 014217 28 EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV 61 (428)
Q Consensus 28 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV 61 (428)
+.+|.++|-+--.|.++.+.-.+.-+ +|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 56778888777789999998877544 445555
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.16 E-value=85 Score=27.44 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKV 374 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i 374 (428)
...++|+-|+|...|++.|.++.+.+|.++.+..
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 4589999999999999999999999997766544
No 272
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.06 E-value=1.1e+02 Score=25.73 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=49.4
Q ss_pred ceEEEecCCCCC-----CHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEE
Q 014217 103 HKLFIGMLPKNV-----SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (428)
Q Consensus 103 ~~v~v~nlp~~~-----t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~ 177 (428)
..+++.+++..+ ......++|..|.+.....+++. .+..-|-|.+++.|..|.-++++.. ++|.. .++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~-f~~~~-~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTS-FNGKN-ELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcc-cCCCc-eEE
Confidence 456666666542 22334467776666655555543 5677889999999999999999988 66652 266
Q ss_pred EEeCCC
Q 014217 178 VKWADT 183 (428)
Q Consensus 178 v~~a~~ 183 (428)
.-++..
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 666644
No 273
>PHA01632 hypothetical protein
Probab=20.52 E-value=1.1e+02 Score=19.83 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhh
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKE 37 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~ 37 (428)
.|.|..+|..-||++|++.+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 3556789999999999987654
No 274
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=20.32 E-value=2.2e+02 Score=23.12 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=37.7
Q ss_pred eEEEeCCC-CCCCHHHHHHHHhh-cCc-eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 014217 16 KLFVGQVP-KHMTEAQLLAMFKE-FAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 16 ~l~v~nLp-~~~t~~~l~~~f~~-~g~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
-+|+++|- ...+-++|+.+... |++ +..++.-+.+.. +.+.|+|.-+.+|..-|..|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~----~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPW----NSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccC----ceEEEEEechHHHHHHHHHHh
Confidence 46778887 22355566666654 332 333544444433 489999999999999998874
No 275
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.13 E-value=2.4e+02 Score=20.48 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=22.5
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecCH
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYESP 394 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~~ 394 (428)
.|.+|+|.+-..+|+.+.|+-|+|.+.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 467888988777899999999999864
Done!