Query 014217
Match_columns 428
No_of_seqs 165 out of 2120
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 2.6E-46 9E-51 344.9 26.2 255 8-423 35-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.3E-45 4.5E-50 338.8 28.8 250 8-425 16-267 (284)
3 3nmr_A Cugbp ELAV-like family 100.0 1.5E-33 5E-38 239.5 22.1 171 12-182 1-175 (175)
4 4f02_A Polyadenylate-binding p 100.0 1.8E-33 6.2E-38 246.3 20.7 167 102-423 15-182 (213)
5 2qfj_A FBP-interacting repress 100.0 9.7E-33 3.3E-37 242.7 23.9 182 102-427 28-210 (216)
6 3md3_A Nuclear and cytoplasmic 100.0 1.8E-33 6.2E-38 236.7 17.9 165 103-420 1-165 (166)
7 4f02_A Polyadenylate-binding p 100.0 3.5E-33 1.2E-37 244.4 19.4 175 9-190 10-187 (213)
8 1fxl_A Paraneoplastic encephal 100.0 4.1E-32 1.4E-36 228.7 21.3 165 13-181 1-167 (167)
9 1l3k_A Heterogeneous nuclear r 100.0 6.6E-32 2.3E-36 233.7 21.5 177 99-426 10-187 (196)
10 1b7f_A Protein (SXL-lethal pro 100.0 4.7E-32 1.6E-36 228.6 19.4 163 102-419 3-168 (168)
11 1fxl_A Paraneoplastic encephal 100.0 3.5E-32 1.2E-36 229.1 18.5 163 102-419 2-167 (167)
12 1b7f_A Protein (SXL-lethal pro 100.0 5.8E-32 2E-36 228.0 19.7 165 13-181 2-168 (168)
13 3nmr_A Cugbp ELAV-like family 100.0 5.6E-32 1.9E-36 229.7 17.2 167 102-420 3-175 (175)
14 2cjk_A Nuclear polyadenylated 100.0 3.2E-32 1.1E-36 229.4 15.1 164 102-423 3-167 (167)
15 2qfj_A FBP-interacting repress 100.0 6.2E-31 2.1E-35 231.2 19.9 170 9-184 23-205 (216)
16 3md3_A Nuclear and cytoplasmic 100.0 7.7E-31 2.6E-35 220.6 18.8 161 15-182 1-165 (166)
17 1l3k_A Heterogeneous nuclear r 100.0 7.7E-31 2.6E-35 226.9 19.2 174 7-188 6-187 (196)
18 3pgw_A U1-A; protein-RNA compl 100.0 2.9E-29 1E-33 229.7 28.9 266 100-420 7-281 (282)
19 2cjk_A Nuclear polyadenylated 100.0 6.1E-31 2.1E-35 221.5 14.8 163 13-184 2-166 (167)
20 2yh0_A Splicing factor U2AF 65 100.0 8.9E-30 3.1E-34 220.6 21.4 183 102-425 4-197 (198)
21 2g4b_A Splicing factor U2AF 65 100.0 4.3E-30 1.5E-34 217.4 18.6 157 102-419 4-171 (172)
22 1fje_B Nucleolin RBD12, protei 100.0 5.1E-31 1.7E-35 223.8 8.9 166 99-423 10-175 (175)
23 3smz_A Protein raver-1, ribonu 100.0 6.6E-29 2.3E-33 227.6 20.8 175 11-191 92-271 (284)
24 3tyt_A Heterogeneous nuclear r 100.0 5.1E-29 1.8E-33 215.5 17.4 194 102-419 4-204 (205)
25 3tyt_A Heterogeneous nuclear r 100.0 6.3E-29 2.2E-33 214.9 16.8 160 12-181 2-204 (205)
26 3sde_A Paraspeckle component 1 100.0 3.1E-28 1E-32 219.8 20.8 158 100-424 20-181 (261)
27 2adc_A Polypyrimidine tract-bi 100.0 6.4E-28 2.2E-32 213.4 22.0 194 100-422 32-228 (229)
28 2g4b_A Splicing factor U2AF 65 100.0 1.7E-28 5.9E-33 207.5 16.8 158 12-182 2-172 (172)
29 1fje_B Nucleolin RBD12, protei 100.0 1.9E-29 6.5E-34 214.0 10.8 165 8-184 7-174 (175)
30 1qm9_A Polypyrimidine tract-bi 100.0 4.2E-28 1.4E-32 210.0 18.6 192 102-422 3-197 (198)
31 3sde_A Paraspeckle component 1 100.0 5.5E-28 1.9E-32 218.1 18.8 164 7-184 15-179 (261)
32 2adc_A Polypyrimidine tract-bi 100.0 1.9E-27 6.5E-32 210.4 21.0 161 8-183 28-227 (229)
33 2yh0_A Splicing factor U2AF 65 100.0 3.4E-29 1.2E-33 216.9 9.0 160 12-184 2-194 (198)
34 2ghp_A U4/U6 snRNA-associated 100.0 6.1E-28 2.1E-32 222.0 17.7 160 100-424 39-199 (292)
35 3pgw_A U1-A; protein-RNA compl 100.0 1.7E-27 5.9E-32 217.9 19.8 161 10-182 5-281 (282)
36 1qm9_A Polypyrimidine tract-bi 99.9 2.7E-27 9.2E-32 204.9 15.7 156 13-183 2-196 (198)
37 2kn4_A Immunoglobulin G-bindin 99.9 1.7E-23 5.7E-28 174.0 14.4 87 341-427 69-155 (158)
38 4fxv_A ELAV-like protein 1; RN 99.9 8.1E-23 2.8E-27 154.8 12.6 81 341-421 18-98 (99)
39 3s8s_A Histone-lysine N-methyl 99.9 1.1E-21 3.8E-26 151.4 11.8 85 340-424 4-88 (110)
40 2cpz_A CUG triplet repeat RNA- 99.9 7.2E-21 2.5E-25 148.9 14.5 90 338-427 21-110 (115)
41 2lxi_A RNA-binding protein 10; 99.9 4.2E-22 1.4E-26 148.5 6.5 83 343-425 2-86 (91)
42 2cq0_A Eukaryotic translation 99.9 8.5E-21 2.9E-25 145.4 13.9 90 338-427 11-100 (103)
43 2lkz_A RNA-binding protein 5; 99.9 1.1E-21 3.9E-26 146.6 8.7 82 341-422 8-95 (95)
44 3bs9_A Nucleolysin TIA-1 isofo 99.9 7E-21 2.4E-25 141.1 12.4 83 341-423 5-87 (87)
45 2dnh_A Bruno-like 5, RNA bindi 99.9 1.1E-20 3.6E-25 145.5 13.8 90 338-428 11-103 (105)
46 3md1_A Nuclear and cytoplasmic 99.9 9E-21 3.1E-25 139.2 12.8 82 343-424 2-83 (83)
47 2do4_A Squamous cell carcinoma 99.8 1.9E-20 6.6E-25 142.6 14.4 86 339-425 14-99 (100)
48 2dgo_A Cytotoxic granule-assoc 99.8 2.1E-20 7.1E-25 146.3 14.8 89 338-426 11-99 (115)
49 2i2y_A Fusion protein consists 99.8 4.4E-21 1.5E-25 157.7 11.1 78 341-423 72-149 (150)
50 2cqc_A Arginine/serine-rich sp 99.8 1.9E-20 6.5E-25 141.3 13.3 84 338-421 11-94 (95)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.7E-21 3.3E-25 139.7 11.4 82 339-420 4-85 (85)
52 2dgs_A DAZ-associated protein 99.8 1.3E-20 4.6E-25 143.2 12.0 89 338-427 6-94 (99)
53 1whw_A Hypothetical protein ri 99.8 1.4E-20 4.6E-25 143.2 12.0 88 339-426 5-92 (99)
54 2dnz_A Probable RNA-binding pr 99.8 1.3E-20 4.4E-25 142.2 11.6 87 341-427 4-90 (95)
55 4f25_A Polyadenylate-binding p 99.8 1.6E-20 5.4E-25 146.6 12.3 82 342-425 5-86 (115)
56 4f25_A Polyadenylate-binding p 99.8 4.7E-21 1.6E-25 149.6 9.3 102 12-118 3-113 (115)
57 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-20 6.1E-25 141.1 12.1 83 338-420 12-94 (94)
58 1x5u_A Splicing factor 3B subu 99.8 1.6E-20 5.5E-25 144.4 11.9 89 338-426 11-99 (105)
59 3p5t_L Cleavage and polyadenyl 99.8 2.3E-21 7.8E-26 144.5 6.8 85 343-427 2-88 (90)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.9E-21 3.4E-25 144.8 10.5 89 339-427 9-97 (102)
61 2x1f_A MRNA 3'-END-processing 99.8 7.9E-21 2.7E-25 143.5 9.7 86 341-426 1-86 (96)
62 2khc_A Testis-specific RNP-typ 99.8 4.6E-20 1.6E-24 145.1 14.5 83 338-420 36-118 (118)
63 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-20 4.9E-25 143.9 10.7 88 339-426 9-96 (102)
64 2d9p_A Polyadenylate-binding p 99.8 4E-20 1.4E-24 141.6 13.2 87 339-427 12-98 (103)
65 2dng_A Eukaryotic translation 99.8 6.3E-20 2.2E-24 140.5 14.2 86 339-426 12-97 (103)
66 1p27_B RNA-binding protein 8A; 99.8 2.7E-20 9.4E-25 143.4 12.0 86 339-424 20-105 (106)
67 2dnm_A SRP46 splicing factor; 99.8 1.5E-20 5E-25 144.1 10.3 88 339-426 10-97 (103)
68 2cpf_A RNA binding motif prote 99.8 2.7E-20 9.3E-25 141.2 11.7 87 341-427 4-93 (98)
69 1x4h_A RNA-binding protein 28; 99.8 4.3E-20 1.5E-24 143.6 12.8 89 338-426 11-105 (111)
70 1oo0_B CG8781-PA, drosophila Y 99.8 2.6E-20 8.9E-25 144.5 11.4 88 339-426 23-110 (110)
71 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-19 6.6E-24 145.9 17.1 90 338-427 38-127 (139)
72 2jrs_A RNA-binding protein 39; 99.8 3.9E-20 1.3E-24 142.5 12.2 85 339-423 23-107 (108)
73 1x5t_A Splicing factor 3B subu 99.8 1.7E-20 5.8E-25 141.8 10.0 87 341-427 4-91 (96)
74 2la6_A RNA-binding protein FUS 99.8 4.6E-20 1.6E-24 140.1 12.2 82 339-420 10-99 (99)
75 2cph_A RNA binding motif prote 99.8 4.1E-20 1.4E-24 142.7 12.0 89 338-426 11-101 (107)
76 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.3E-20 3.2E-24 139.6 13.8 88 338-427 11-98 (103)
77 2cqp_A RNA-binding protein 12; 99.8 4.1E-20 1.4E-24 140.2 11.4 85 339-423 12-96 (98)
78 3ns6_A Eukaryotic translation 99.8 6.3E-21 2.1E-25 145.0 6.4 83 341-423 5-94 (100)
79 2ywk_A Putative RNA-binding pr 99.8 5.8E-20 2E-24 138.5 11.4 82 339-421 13-94 (95)
80 2kxn_B Transformer-2 protein h 99.8 2.5E-20 8.4E-25 148.3 9.8 88 338-425 42-129 (129)
81 2kn4_A Immunoglobulin G-bindin 99.8 3.4E-20 1.2E-24 153.9 11.0 137 43-184 2-150 (158)
82 2cqd_A RNA-binding region cont 99.8 9.4E-20 3.2E-24 142.8 12.8 88 338-426 13-100 (116)
83 2do0_A HnRNP M, heterogeneous 99.8 2.4E-19 8.2E-24 140.1 15.0 86 339-425 12-97 (114)
84 4fxv_A ELAV-like protein 1; RN 99.8 4.4E-20 1.5E-24 139.6 10.4 86 8-96 13-98 (99)
85 2dgx_A KIAA0430 protein; RRM d 99.8 7.2E-20 2.5E-24 138.1 11.4 84 341-427 8-95 (96)
86 3r27_A HnRNP L, heterogeneous 99.8 6E-20 2E-24 136.9 10.8 80 338-423 17-98 (100)
87 2dgp_A Bruno-like 4, RNA bindi 99.8 4.6E-20 1.6E-24 142.1 10.6 88 339-426 10-100 (106)
88 2cpe_A RNA-binding protein EWS 99.8 6.7E-20 2.3E-24 142.9 11.6 88 339-426 12-107 (113)
89 1wi8_A EIF-4B, eukaryotic tran 99.8 9.9E-20 3.4E-24 139.7 12.4 85 340-426 13-98 (104)
90 2cq3_A RNA-binding protein 9; 99.8 2.3E-19 7.8E-24 137.4 14.3 87 339-427 12-98 (103)
91 4a8x_A RNA-binding protein wit 99.8 7.4E-20 2.5E-24 135.9 10.9 84 341-424 3-87 (88)
92 2div_A TRNA selenocysteine ass 99.8 6.7E-20 2.3E-24 139.3 10.9 86 339-424 6-96 (99)
93 2dh8_A DAZ-associated protein 99.8 6.2E-20 2.1E-24 141.1 10.8 88 338-426 12-99 (105)
94 2kt5_A RNA and export factor-b 99.8 4.9E-19 1.7E-23 140.4 16.2 89 339-428 32-120 (124)
95 2fy1_A RNA-binding motif prote 99.8 7.4E-20 2.5E-24 142.9 10.9 86 339-425 4-89 (116)
96 2rs2_A Musashi-1, RNA-binding 99.8 7.1E-20 2.4E-24 141.4 10.3 88 338-426 21-108 (109)
97 3ucg_A Polyadenylate-binding p 99.8 1.4E-19 4.8E-24 134.7 11.2 82 341-423 5-86 (89)
98 1x4d_A Matrin 3; structural ge 99.8 9.1E-20 3.1E-24 137.5 10.2 80 339-424 12-94 (102)
99 1sjq_A Polypyrimidine tract-bi 99.8 6.1E-20 2.1E-24 138.3 9.1 82 339-426 13-96 (105)
100 2dgw_A Probable RNA-binding pr 99.8 3.5E-19 1.2E-23 133.0 13.2 84 339-425 7-90 (91)
101 3ulh_A THO complex subunit 4; 99.8 3E-19 1E-23 137.8 13.1 81 340-421 27-107 (107)
102 2cqg_A TDP-43, TAR DNA-binding 99.8 5.9E-19 2E-23 135.1 14.4 86 338-425 11-96 (103)
103 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-19 1.2E-23 147.2 14.2 88 340-427 37-124 (156)
104 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-19 6.5E-24 134.8 11.3 85 340-426 6-90 (92)
105 2dhg_A TRNA selenocysteine ass 99.8 1.2E-19 4E-24 139.3 10.4 87 339-426 6-94 (104)
106 2ek1_A RNA-binding protein 12; 99.8 6.8E-20 2.3E-24 138.2 8.8 82 340-421 13-94 (95)
107 3n9u_C Cleavage and polyadenyl 99.8 1.4E-19 4.7E-24 148.7 11.3 83 340-422 53-137 (156)
108 3ex7_B RNA-binding protein 8A; 99.8 1.2E-19 4.2E-24 144.4 10.4 88 339-426 19-106 (126)
109 1x4a_A Splicing factor, argini 99.8 6.2E-19 2.1E-23 136.4 14.1 87 338-427 18-104 (109)
110 3s7r_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 131.6 12.3 80 339-419 8-87 (87)
111 1wex_A Hypothetical protein (r 99.8 2.1E-19 7.2E-24 136.6 11.1 83 339-427 12-96 (104)
112 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-19 6E-24 129.1 9.8 74 341-420 6-79 (89)
113 2err_A Ataxin-2-binding protei 99.8 1.3E-19 4.6E-24 139.9 9.9 84 338-423 25-108 (109)
114 1p1t_A Cleavage stimulation fa 99.8 5.9E-20 2E-24 141.0 7.8 85 340-424 6-90 (104)
115 1x4b_A Heterogeneous nuclear r 99.8 1.8E-19 6E-24 141.2 10.5 86 340-426 25-110 (116)
116 2cq4_A RNA binding motif prote 99.8 4.5E-20 1.5E-24 144.1 6.9 84 340-424 23-106 (114)
117 2m2b_A RNA-binding protein 10; 99.8 4.9E-20 1.7E-24 147.5 7.3 87 338-425 19-111 (131)
118 2cq1_A PTB-like protein L; RRM 99.8 8.1E-19 2.8E-23 132.5 12.9 81 339-425 12-94 (101)
119 1s79_A Lupus LA protein; RRM, 99.8 1.4E-19 4.6E-24 137.8 8.3 80 340-421 9-88 (103)
120 1x4e_A RNA binding motif, sing 99.8 4.3E-20 1.5E-24 136.1 5.2 81 341-421 4-84 (85)
121 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.8E-20 2E-24 139.7 6.0 83 339-423 16-99 (100)
122 2cpi_A CCR4-NOT transcription 99.8 4.1E-19 1.4E-23 137.7 10.7 86 339-424 12-103 (111)
123 2fc9_A NCL protein; structure 99.8 7.8E-19 2.7E-23 133.9 12.0 85 338-426 11-95 (101)
124 2lxi_A RNA-binding protein 10; 99.8 4.4E-20 1.5E-24 137.5 4.8 84 14-99 1-85 (91)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.8E-19 2.7E-23 142.6 12.3 82 338-419 59-140 (140)
126 2a3j_A U1 small nuclear ribonu 99.8 3.8E-19 1.3E-23 140.2 9.8 82 339-423 26-111 (127)
127 2db1_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 139.1 9.9 82 339-422 14-98 (118)
128 2fc8_A NCL protein; structure 99.8 1.6E-18 5.3E-23 132.5 12.9 85 339-426 12-96 (102)
129 2jwn_A Embryonic polyadenylate 99.8 8.3E-19 2.8E-23 139.1 11.5 84 341-425 35-118 (124)
130 1wez_A HnRNP H', FTP-3, hetero 99.8 7.7E-19 2.6E-23 133.6 10.8 84 339-425 12-95 (102)
131 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-18 4.1E-23 145.3 12.9 87 340-426 70-156 (165)
132 1x5o_A RNA binding motif, sing 99.8 2.8E-18 9.7E-23 133.9 14.2 83 339-422 22-112 (114)
133 2ad9_A Polypyrimidine tract-bi 99.8 5.9E-19 2E-23 136.5 10.1 82 339-426 28-111 (119)
134 2ki2_A SS-DNA binding protein 99.8 5.3E-20 1.8E-24 137.2 4.0 84 343-427 2-85 (90)
135 2dis_A Unnamed protein product 99.8 4.2E-19 1.4E-23 137.5 9.2 85 341-425 7-95 (109)
136 2dnq_A RNA-binding protein 4B; 99.8 9E-19 3.1E-23 130.4 10.6 81 339-427 5-85 (90)
137 2mss_A Protein (musashi1); RNA 99.8 1.7E-19 5.9E-24 129.4 6.1 75 344-419 1-75 (75)
138 2lkz_A RNA-binding protein 5; 99.8 1.8E-19 6.1E-24 134.6 6.4 85 10-96 5-94 (95)
139 2lea_A Serine/arginine-rich sp 99.8 1.8E-19 6.2E-24 144.6 6.8 88 339-426 44-131 (135)
140 2cpy_A RNA-binding protein 12; 99.8 3.7E-19 1.3E-23 138.7 8.3 83 339-423 12-95 (114)
141 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-18 4.6E-23 133.9 11.1 94 6-99 5-98 (106)
142 1why_A Hypothetical protein ri 99.8 2E-18 6.8E-23 130.5 11.8 81 339-425 14-96 (97)
143 2dgt_A RNA-binding protein 30; 99.8 2.9E-18 1E-22 128.2 12.1 82 338-427 6-87 (92)
144 1x4f_A Matrin 3; structural ge 99.8 9.4E-19 3.2E-23 133.8 9.5 81 339-425 22-105 (112)
145 2xnq_A Nuclear polyadenylated 99.8 2.3E-18 7.9E-23 129.9 11.4 77 339-423 19-96 (97)
146 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.3E-19 7.8E-24 129.6 5.5 76 343-419 1-76 (77)
147 2cpx_A Hypothetical protein FL 99.8 5.9E-19 2E-23 138.0 8.3 88 340-427 23-110 (115)
148 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.4E-23 132.7 10.4 82 340-423 13-95 (104)
149 2nlw_A Eukaryotic translation 99.8 1.2E-18 4E-23 133.7 9.7 81 341-423 14-101 (105)
150 2hgl_A HNRPF protein, heteroge 99.8 5.5E-19 1.9E-23 140.9 8.1 81 340-422 42-125 (136)
151 1fj7_A Nucleolin RBD1, protein 99.8 1.4E-19 4.7E-24 138.1 4.4 85 340-426 15-99 (101)
152 2dnn_A RNA-binding protein 12; 99.8 1.4E-18 4.9E-23 133.1 9.9 78 341-421 15-92 (109)
153 2jvr_A Nucleolar protein 3; RN 99.8 1.2E-18 4E-23 133.8 9.3 80 341-424 27-107 (111)
154 3s8s_A Histone-lysine N-methyl 99.8 1.7E-18 5.7E-23 133.5 10.0 83 11-96 3-85 (110)
155 2dnh_A Bruno-like 5, RNA bindi 99.8 5.3E-18 1.8E-22 130.2 12.7 91 8-99 9-99 (105)
156 2jvo_A Nucleolar protein 3; nu 99.8 1.6E-18 5.5E-23 133.4 9.7 80 338-425 27-106 (108)
157 1wel_A RNA-binding protein 12; 99.8 8.7E-19 3E-23 138.8 8.4 82 340-422 23-104 (124)
158 2cpj_A Non-POU domain-containi 99.8 2.4E-18 8.3E-23 130.6 10.5 81 339-425 12-92 (99)
159 2ytc_A PRE-mRNA-splicing facto 99.8 2.9E-18 9.9E-23 126.3 10.6 76 339-420 9-85 (85)
160 1x4g_A Nucleolysin TIAR; struc 99.8 2.4E-18 8.3E-23 133.0 10.5 83 339-427 22-104 (109)
161 1x4c_A Splicing factor, argini 99.8 6.1E-18 2.1E-22 130.4 12.7 78 341-425 14-96 (108)
162 2cpd_A Apobec-1 stimulating pr 99.8 8.4E-18 2.9E-22 127.6 13.1 80 339-426 12-93 (99)
163 1wf1_A RNA-binding protein RAL 99.8 6.6E-18 2.3E-22 130.8 12.6 79 341-427 26-105 (110)
164 2e5j_A Methenyltetrahydrofolat 99.8 3.1E-18 1.1E-22 129.4 10.4 81 339-424 16-96 (97)
165 2dgu_A Heterogeneous nuclear r 99.8 5.4E-18 1.9E-22 129.6 11.7 79 340-426 9-87 (103)
166 2dnp_A RNA-binding protein 14; 99.8 5.4E-18 1.9E-22 126.2 10.9 80 339-426 6-85 (90)
167 2hvz_A Splicing factor, argini 99.8 1.4E-18 4.7E-23 132.5 7.7 79 343-426 1-79 (101)
168 1nu4_A U1A RNA binding domain; 99.8 1.3E-18 4.4E-23 131.6 7.4 83 339-424 5-91 (97)
169 1fjc_A Nucleolin RBD2, protein 99.8 3.2E-18 1.1E-22 129.2 9.2 83 339-426 13-95 (96)
170 2krb_A Eukaryotic translation 99.7 9.2E-19 3.1E-23 127.6 5.5 72 343-416 2-80 (81)
171 2cqh_A IGF-II mRNA-binding pro 99.7 3.5E-18 1.2E-22 128.1 8.8 80 340-426 6-87 (93)
172 3lqv_A PRE-mRNA branch site pr 99.7 3.9E-18 1.3E-22 133.3 9.4 106 10-128 4-109 (115)
173 2la4_A Nuclear and cytoplasmic 99.7 2.6E-18 8.8E-23 131.0 8.1 76 341-422 26-101 (101)
174 2i2y_A Fusion protein consists 99.7 7.3E-18 2.5E-22 138.3 11.1 121 53-184 10-148 (150)
175 2j8a_A Histone-lysine N-methyl 99.7 4.6E-18 1.6E-22 130.0 9.0 80 343-422 3-96 (136)
176 2lmi_A GRSF-1, G-rich sequence 99.7 6.2E-19 2.1E-23 135.7 4.4 83 339-423 8-93 (107)
177 3zzy_A Polypyrimidine tract-bi 99.7 1.7E-17 5.8E-22 129.8 12.5 82 342-428 28-112 (130)
178 2kvi_A Nuclear polyadenylated 99.7 3.4E-18 1.1E-22 128.9 8.2 80 339-426 7-87 (96)
179 2xs2_A Deleted in azoospermia- 99.7 2.8E-18 9.6E-23 131.0 7.8 82 341-425 8-89 (102)
180 2lcw_A RNA-binding protein FUS 99.6 1.1E-19 3.9E-24 142.3 0.0 88 339-426 4-99 (116)
181 3pgw_S U1-70K; protein-RNA com 99.7 1.7E-18 5.9E-23 166.0 7.9 84 341-424 101-184 (437)
182 1p27_B RNA-binding protein 8A; 99.7 1.4E-17 4.7E-22 128.2 11.5 87 8-97 17-103 (106)
183 2dnz_A Probable RNA-binding pr 99.7 1.9E-17 6.3E-22 124.7 12.0 86 11-99 2-87 (95)
184 1whx_A Hypothetical protein ri 99.7 3.5E-18 1.2E-22 132.2 8.1 78 341-424 9-86 (111)
185 2cqc_A Arginine/serine-rich sp 99.7 9.4E-18 3.2E-22 126.3 10.1 88 5-95 6-93 (95)
186 2diu_A KIAA0430 protein; struc 99.7 6.1E-18 2.1E-22 122.1 8.5 74 341-424 7-86 (96)
187 2cq0_A Eukaryotic translation 99.7 7.2E-18 2.4E-22 129.0 9.5 91 5-98 6-96 (103)
188 3p5t_L Cleavage and polyadenyl 99.7 4.3E-18 1.5E-22 126.6 8.0 81 15-98 2-84 (90)
189 3q2s_C Cleavage and polyadenyl 99.7 4.7E-18 1.6E-22 149.0 9.4 82 341-422 67-150 (229)
190 1iqt_A AUF1, heterogeneous nuc 99.7 9.3E-19 3.2E-23 125.6 4.0 75 344-419 1-75 (75)
191 2jrs_A RNA-binding protein 39; 99.7 1.9E-17 6.4E-22 127.4 11.6 87 8-97 20-106 (108)
192 2cq2_A Hypothetical protein LO 99.7 6.4E-18 2.2E-22 129.1 8.8 82 340-427 23-111 (114)
193 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.8E-22 123.7 9.9 83 11-96 3-85 (87)
194 2f3j_A RNA and export factor b 99.7 3.1E-17 1.1E-21 137.7 13.6 87 339-426 85-171 (177)
195 3lqv_A PRE-mRNA branch site pr 99.7 6.4E-18 2.2E-22 132.1 8.6 81 341-424 7-87 (115)
196 1x5p_A Negative elongation fac 99.7 3.9E-17 1.3E-21 123.3 12.7 80 340-427 13-92 (97)
197 1x5u_A Splicing factor 3B subu 99.7 1.8E-17 6.3E-22 127.2 11.0 90 7-99 8-97 (105)
198 2la6_A RNA-binding protein FUS 99.7 2.3E-17 7.9E-22 125.1 11.4 85 7-94 6-98 (99)
199 2cpz_A CUG triplet repeat RNA- 99.7 1.4E-17 4.7E-22 130.1 10.3 89 7-98 18-106 (115)
200 2e44_A Insulin-like growth fac 99.7 1.2E-17 4E-22 126.1 9.6 81 340-424 13-94 (96)
201 2dgo_A Cytotoxic granule-assoc 99.7 2E-17 6.9E-22 129.2 11.2 92 5-99 6-97 (115)
202 2dha_A FLJ20171 protein; RRM d 99.7 3.4E-18 1.2E-22 133.9 6.6 81 340-422 21-105 (123)
203 2d9p_A Polyadenylate-binding p 99.7 2.1E-17 7.3E-22 126.3 10.9 91 4-99 5-95 (103)
204 2dgs_A DAZ-associated protein 99.7 2.7E-17 9.2E-22 124.8 11.4 86 9-98 5-90 (99)
205 2cph_A RNA binding motif prote 99.7 2.7E-17 9.2E-22 126.8 11.4 92 5-99 6-99 (107)
206 1sjr_A Polypyrimidine tract-bi 99.7 2.3E-17 7.8E-22 134.1 11.3 81 341-425 45-127 (164)
207 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.2E-22 122.9 9.0 82 10-94 3-84 (85)
208 3md1_A Nuclear and cytoplasmic 99.7 2.1E-17 7.2E-22 121.0 10.2 81 14-97 1-81 (83)
209 1whw_A Hypothetical protein ri 99.7 1.8E-17 6E-22 125.8 10.0 87 10-99 4-90 (99)
210 3ns6_A Eukaryotic translation 99.7 5.1E-18 1.7E-22 128.8 7.0 84 11-96 3-92 (100)
211 2pe8_A Splicing factor 45; RRM 99.7 3.3E-17 1.1E-21 124.7 11.5 82 340-421 6-93 (105)
212 2dnm_A SRP46 splicing factor; 99.7 1.6E-17 5.6E-22 127.0 9.9 88 8-98 7-94 (103)
213 1s79_A Lupus LA protein; RRM, 99.7 2.3E-17 7.9E-22 125.4 10.2 83 9-96 6-88 (103)
214 2do4_A Squamous cell carcinoma 99.7 2.8E-17 9.6E-22 124.9 10.7 87 8-98 11-97 (100)
215 1x4h_A RNA-binding protein 28; 99.7 2.4E-17 8.2E-22 128.0 10.6 91 5-98 6-102 (111)
216 1sjq_A Polypyrimidine tract-bi 99.7 1.8E-17 6.2E-22 124.8 9.4 81 9-97 11-92 (105)
217 2dhg_A TRNA selenocysteine ass 99.7 4E-17 1.4E-21 125.0 11.6 86 9-97 4-90 (104)
218 2kxn_B Transformer-2 protein h 99.7 2.8E-17 9.6E-22 130.6 11.0 88 7-97 39-126 (129)
219 1x5s_A Cold-inducible RNA-bind 99.7 2.8E-17 9.6E-22 125.4 10.6 88 8-98 6-93 (102)
220 3egn_A RNA-binding protein 40; 99.7 3.9E-18 1.3E-22 138.8 5.8 85 339-424 42-132 (143)
221 2div_A TRNA selenocysteine ass 99.7 2.2E-17 7.6E-22 125.3 9.7 86 9-97 4-94 (99)
222 2x1f_A MRNA 3'-END-processing 99.7 2.5E-17 8.7E-22 124.1 9.8 82 13-97 1-82 (96)
223 2e5h_A Zinc finger CCHC-type a 99.7 2.1E-17 7.3E-22 124.1 9.2 84 8-94 10-93 (94)
224 1oo0_B CG8781-PA, drosophila Y 99.7 2.8E-17 9.7E-22 127.3 9.8 87 8-97 20-106 (110)
225 1x4e_A RNA binding motif, sing 99.7 1.2E-17 4.1E-22 122.9 7.3 82 11-95 2-83 (85)
226 2e5g_A U6 snRNA-specific termi 99.7 4.3E-17 1.5E-21 122.3 10.4 80 341-426 7-86 (94)
227 2hgn_A Heterogeneous nuclear r 99.7 2.1E-18 7.2E-23 138.0 3.3 83 340-425 44-126 (139)
228 2hgm_A HNRPF protein, heteroge 99.7 7.2E-18 2.5E-22 132.2 6.1 80 340-422 40-121 (126)
229 2khc_A Testis-specific RNP-typ 99.7 2E-17 6.7E-22 129.9 8.7 85 7-94 33-117 (118)
230 2fy1_A RNA-binding motif prote 99.7 4.7E-17 1.6E-21 126.9 10.6 85 10-98 3-87 (116)
231 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.5E-22 126.8 7.8 89 8-99 6-94 (102)
232 1wg1_A KIAA1579 protein, homol 99.7 2.8E-17 9.7E-22 121.6 8.8 76 341-423 4-79 (88)
233 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 124.5 12.9 78 343-426 26-106 (124)
234 1p1t_A Cleavage stimulation fa 99.7 1.9E-17 6.4E-22 126.9 8.0 87 9-98 3-89 (104)
235 1x5t_A Splicing factor 3B subu 99.7 2.1E-17 7.3E-22 124.6 8.0 86 11-99 2-88 (96)
236 2cqd_A RNA-binding region cont 99.7 3.9E-17 1.3E-21 127.8 9.4 88 6-97 9-96 (116)
237 2cpf_A RNA binding motif prote 99.7 3.4E-17 1.2E-21 124.0 8.5 85 12-99 3-90 (98)
238 2ywk_A Putative RNA-binding pr 99.7 5.8E-17 2E-21 122.0 9.8 84 8-95 10-93 (95)
239 2cpe_A RNA-binding protein EWS 99.7 4.8E-17 1.6E-21 126.6 9.2 89 7-98 8-104 (113)
240 2dng_A Eukaryotic translation 99.7 6.7E-17 2.3E-21 123.5 9.7 88 7-99 8-95 (103)
241 2m2b_A RNA-binding protein 10; 99.7 2.1E-17 7.1E-22 132.1 7.2 88 7-98 16-109 (131)
242 3s7r_A Heterogeneous nuclear r 99.7 4.7E-17 1.6E-21 120.3 8.5 82 8-93 5-86 (87)
243 2hvz_A Splicing factor, argini 99.7 3.9E-17 1.3E-21 124.4 8.3 89 15-111 1-100 (101)
244 3n9u_C Cleavage and polyadenyl 99.7 5.3E-17 1.8E-21 133.3 9.6 81 13-96 54-136 (156)
245 3d2w_A TAR DNA-binding protein 99.7 6.8E-17 2.3E-21 119.5 9.2 78 339-425 8-87 (89)
246 2mss_A Protein (musashi1); RNA 99.7 4.3E-17 1.5E-21 116.8 7.9 75 16-94 1-75 (75)
247 3ucg_A Polyadenylate-binding p 99.7 4.1E-17 1.4E-21 121.2 8.0 82 12-97 4-85 (89)
248 1wi8_A EIF-4B, eukaryotic tran 99.7 6.6E-17 2.3E-21 123.8 9.3 88 6-98 7-95 (104)
249 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-16 5.9E-21 118.6 11.3 84 10-98 4-87 (92)
250 2cq1_A PTB-like protein L; RRM 99.7 8.3E-17 2.8E-21 121.4 9.6 87 3-97 4-91 (101)
251 2rs2_A Musashi-1, RNA-binding 99.7 4.2E-17 1.4E-21 125.8 8.1 86 8-97 19-104 (109)
252 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.1E-17 1E-21 118.3 6.9 76 15-94 1-76 (77)
253 1x5o_A RNA binding motif, sing 99.7 1.9E-16 6.4E-21 123.5 11.7 87 9-96 20-111 (114)
254 3r27_A HnRNP L, heterogeneous 99.7 8.3E-17 2.8E-21 119.9 9.1 82 7-96 14-96 (100)
255 3ulh_A THO complex subunit 4; 99.7 1.1E-16 3.9E-21 123.2 10.2 84 8-95 23-106 (107)
256 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4E-21 127.0 10.6 88 8-98 16-103 (126)
257 1u6f_A Tcubp1, RNA-binding pro 99.7 8.5E-17 2.9E-21 130.2 9.7 89 8-99 36-124 (139)
258 1wex_A Hypothetical protein (r 99.7 2E-16 6.7E-21 120.2 10.8 86 4-97 5-91 (104)
259 2cq3_A RNA-binding protein 9; 99.7 2.2E-16 7.6E-21 120.6 11.1 89 5-98 6-94 (103)
260 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.2E-17 1.8E-21 123.3 7.4 85 8-97 13-98 (100)
261 2ek1_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 123.1 6.4 84 9-95 10-93 (95)
262 2dh8_A DAZ-associated protein 99.7 7E-17 2.4E-21 123.9 8.1 88 7-98 9-96 (105)
263 2cqp_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 123.0 7.0 86 8-96 9-94 (98)
264 4a8x_A RNA-binding protein wit 99.7 7.7E-17 2.6E-21 119.4 7.8 82 13-97 3-85 (88)
265 2dis_A Unnamed protein product 99.7 1.6E-16 5.3E-21 122.9 9.8 87 11-99 5-94 (109)
266 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 123.5 9.0 82 8-97 25-107 (119)
267 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.2E-16 7.6E-21 120.6 10.4 87 7-98 8-94 (103)
268 2wbr_A GW182, gawky, LD47780P; 99.7 9.2E-17 3.1E-21 115.0 7.6 74 12-94 5-78 (89)
269 2cq4_A RNA binding motif prote 99.7 4E-17 1.4E-21 127.3 6.1 85 9-97 20-104 (114)
270 1wg5_A Heterogeneous nuclear r 99.7 2E-16 6.8E-21 120.9 9.8 84 8-96 9-93 (104)
271 2do0_A HnRNP M, heterogeneous 99.7 2.8E-16 9.5E-21 122.5 10.7 86 8-97 9-94 (114)
272 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.4E-16 8.1E-21 130.2 10.5 87 9-98 34-120 (156)
273 2ki2_A SS-DNA binding protein 99.7 5.9E-17 2E-21 120.6 5.9 79 15-97 2-80 (90)
274 2cqg_A TDP-43, TAR DNA-binding 99.7 3.7E-16 1.3E-20 119.4 10.5 87 7-98 8-94 (103)
275 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.8E-21 124.6 7.6 77 341-420 7-86 (114)
276 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-16 7.7E-21 118.8 9.1 84 9-98 4-91 (96)
277 3ue2_A Poly(U)-binding-splicin 99.7 3.6E-16 1.2E-20 121.2 10.4 81 341-421 19-108 (118)
278 2jwn_A Embryonic polyadenylate 99.7 9E-17 3.1E-21 127.3 7.0 86 9-98 31-116 (124)
279 3beg_B Splicing factor, argini 99.7 9.3E-17 3.2E-21 125.1 6.9 77 341-424 15-96 (115)
280 2bz2_A Negative elongation fac 99.7 1.9E-16 6.6E-21 124.1 8.8 80 340-427 37-116 (121)
281 1x4f_A Matrin 3; structural ge 99.7 2.2E-16 7.6E-21 120.6 8.8 85 5-97 16-102 (112)
282 1wez_A HnRNP H', FTP-3, hetero 99.7 1.7E-16 5.9E-21 120.5 8.0 82 9-96 10-91 (102)
283 2lea_A Serine/arginine-rich sp 99.7 1.3E-16 4.3E-21 128.0 7.5 120 58-184 6-127 (135)
284 2kt5_A RNA and export factor-b 99.7 4.1E-16 1.4E-20 123.4 10.3 84 10-97 31-114 (124)
285 1x4b_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 125.3 6.8 87 8-98 21-107 (116)
286 2dgw_A Probable RNA-binding pr 99.7 2.6E-16 8.9E-21 117.3 8.5 83 9-97 5-87 (91)
287 2hgl_A HNRPF protein, heteroge 99.7 1E-16 3.5E-21 127.8 6.5 82 9-95 39-123 (136)
288 1x4a_A Splicing factor, argini 99.7 6.5E-16 2.2E-20 119.3 10.9 85 8-98 16-100 (109)
289 2cpy_A RNA-binding protein 12; 99.7 7.7E-17 2.6E-21 125.5 5.7 85 8-97 9-94 (114)
290 2krb_A Eukaryotic translation 99.7 2.1E-16 7.3E-21 114.9 7.7 66 14-81 1-72 (81)
291 2lmi_A GRSF-1, G-rich sequence 99.7 1.3E-16 4.3E-21 122.7 6.7 84 8-96 5-91 (107)
292 3v4m_A Splicing factor U2AF 65 99.6 4E-16 1.4E-20 118.8 8.8 81 341-421 4-96 (105)
293 2a3j_A U1 small nuclear ribonu 99.6 7.7E-16 2.6E-20 121.2 10.7 83 9-97 24-110 (127)
294 2err_A Ataxin-2-binding protei 99.6 2.8E-16 9.5E-21 121.2 7.9 84 8-96 23-106 (109)
295 1x4d_A Matrin 3; structural ge 99.6 2.3E-16 7.7E-21 118.9 7.0 82 8-97 9-92 (102)
296 2hzc_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 114.5 8.9 71 341-418 5-86 (87)
297 2nlw_A Eukaryotic translation 99.6 3.4E-16 1.1E-20 119.9 7.8 82 10-96 11-99 (105)
298 2db1_A Heterogeneous nuclear r 99.6 1.5E-16 5.3E-21 124.4 6.0 82 9-95 12-96 (118)
299 1wf0_A TDP-43, TAR DNA-binding 99.6 1.7E-16 5.8E-21 117.5 5.9 79 341-426 4-82 (88)
300 1iqt_A AUF1, heterogeneous nuc 99.6 2E-16 6.8E-21 113.3 6.0 74 16-93 1-74 (75)
301 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.8E-16 1.6E-20 126.0 9.0 84 8-94 57-140 (140)
302 1wel_A RNA-binding protein 12; 99.6 1.3E-16 4.3E-21 126.3 5.4 83 10-96 21-103 (124)
303 2cpi_A CCR4-NOT transcription 99.6 3.1E-16 1.1E-20 121.4 7.5 87 8-97 9-101 (111)
304 2voo_A Lupus LA protein; RNA-b 99.6 1.2E-15 4.1E-20 130.0 11.7 81 342-424 109-189 (193)
305 2dnq_A RNA-binding protein 4B; 99.6 2E-15 6.7E-20 112.2 11.3 79 10-99 4-82 (90)
306 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4.2E-21 121.6 4.8 85 9-98 12-96 (101)
307 2cpj_A Non-POU domain-containi 99.6 1E-15 3.5E-20 116.0 9.6 85 4-97 5-89 (99)
308 3q2s_C Cleavage and polyadenyl 99.6 6E-16 2E-20 135.6 8.9 81 13-96 67-149 (229)
309 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.1E-15 3.8E-20 127.2 10.1 85 10-97 68-152 (165)
310 2dit_A HIV TAT specific factor 99.6 2.9E-15 9.8E-20 116.1 11.7 82 339-424 12-104 (112)
311 2dnn_A RNA-binding protein 12; 99.6 4E-16 1.4E-20 119.5 6.7 79 11-95 13-91 (109)
312 1why_A Hypothetical protein ri 99.6 2E-15 6.9E-20 113.8 10.5 83 8-97 11-93 (97)
313 2hgm_A HNRPF protein, heteroge 99.6 5.7E-16 1.9E-20 121.4 7.5 82 8-95 36-119 (126)
314 2ytc_A PRE-mRNA-splicing facto 99.6 1.5E-15 5.3E-20 111.5 9.4 79 7-94 5-84 (85)
315 2fc9_A NCL protein; structure 99.6 8.7E-16 3E-20 116.8 8.1 85 7-98 8-92 (101)
316 2fc8_A NCL protein; structure 99.6 1.3E-15 4.4E-20 116.2 8.9 88 6-99 7-94 (102)
317 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5E-20 115.6 9.1 79 9-96 22-100 (101)
318 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-15 9.1E-20 113.1 10.2 81 9-97 14-94 (97)
319 2cpx_A Hypothetical protein FL 99.6 3.9E-16 1.3E-20 121.9 5.6 87 10-99 21-107 (115)
320 2dha_A FLJ20171 protein; RRM d 99.6 5.8E-16 2E-20 121.1 6.0 79 11-94 20-102 (123)
321 1x4c_A Splicing factor, argini 99.6 2.3E-15 7.7E-20 115.9 9.1 82 9-97 10-93 (108)
322 2lcw_A RNA-binding protein FUS 99.4 5.6E-17 1.9E-21 126.8 0.0 87 9-98 2-96 (116)
323 2jvr_A Nucleolar protein 3; RN 99.6 1E-15 3.5E-20 117.4 7.1 81 9-96 23-104 (111)
324 3u1l_A PRE-mRNA-splicing facto 99.6 1E-15 3.5E-20 133.1 7.9 80 339-424 131-231 (240)
325 2jvo_A Nucleolar protein 3; nu 99.6 2.6E-15 8.8E-20 115.4 9.0 80 8-98 25-104 (108)
326 1whx_A Hypothetical protein ri 99.6 2.5E-15 8.5E-20 116.1 8.9 78 10-96 6-83 (111)
327 1x4g_A Nucleolysin TIAR; struc 99.6 3.6E-15 1.2E-19 115.1 9.7 81 9-98 20-100 (109)
328 2hgn_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 123.5 5.3 81 10-96 42-122 (139)
329 2dnl_A Cytoplasmic polyadenyla 99.6 5.2E-16 1.8E-20 120.7 4.6 67 10-77 4-73 (114)
330 2f3j_A RNA and export factor b 99.6 5.1E-15 1.8E-19 124.2 10.8 84 10-97 84-167 (177)
331 2xnq_A Nuclear polyadenylated 99.6 5.3E-15 1.8E-19 111.3 9.8 78 8-96 16-94 (97)
332 1nu4_A U1A RNA binding domain; 99.6 1.2E-15 4E-20 115.2 6.1 83 10-98 4-90 (97)
333 2kvi_A Nuclear polyadenylated 99.6 5.1E-15 1.7E-19 111.3 9.5 78 9-97 5-83 (96)
334 2dnp_A RNA-binding protein 14; 99.6 4.6E-15 1.6E-19 110.2 9.1 80 8-98 3-82 (90)
335 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-15 3.9E-20 115.1 5.7 83 7-97 9-91 (96)
336 2xs2_A Deleted in azoospermia- 99.6 1.4E-15 4.6E-20 116.0 6.2 80 10-95 5-84 (102)
337 1jmt_A Splicing factor U2AF 35 99.6 6.8E-16 2.3E-20 117.3 4.4 72 347-419 20-103 (104)
338 2cpd_A Apobec-1 stimulating pr 99.6 6.5E-15 2.2E-19 111.5 9.9 85 3-98 4-90 (99)
339 1sjr_A Polypyrimidine tract-bi 99.6 8.8E-15 3E-19 118.8 10.8 82 11-97 43-124 (164)
340 3pgw_S U1-70K; protein-RNA com 99.6 6.8E-16 2.3E-20 148.0 4.8 151 31-184 9-182 (437)
341 2j8a_A Histone-lysine N-methyl 99.6 2.1E-15 7.1E-20 115.4 6.2 78 15-95 3-94 (136)
342 2dgt_A RNA-binding protein 30; 99.6 6.8E-15 2.3E-19 109.7 8.8 80 8-98 4-83 (92)
343 2d9o_A DNAJ (HSP40) homolog, s 99.6 2E-14 6.8E-19 107.7 11.0 79 341-426 9-94 (100)
344 2e44_A Insulin-like growth fac 99.6 1E-14 3.4E-19 109.8 9.4 82 9-97 10-92 (96)
345 2cq2_A Hypothetical protein LO 99.6 2.8E-15 9.7E-20 114.5 6.1 82 8-95 19-104 (114)
346 1wf1_A RNA-binding protein RAL 99.6 7.8E-15 2.7E-19 113.3 8.7 77 10-97 23-100 (110)
347 2dgu_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 111.7 8.7 79 10-99 7-85 (103)
348 2cqh_A IGF-II mRNA-binding pro 99.6 4.4E-15 1.5E-19 111.0 6.8 80 10-98 4-84 (93)
349 3d2w_A TAR DNA-binding protein 99.6 6.2E-15 2.1E-19 108.9 7.3 80 8-97 5-84 (89)
350 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.5E-19 108.6 9.1 78 10-96 4-81 (94)
351 2e5i_A Heterogeneous nuclear r 99.6 3.2E-14 1.1E-18 110.9 11.4 79 12-97 23-102 (124)
352 2diu_A KIAA0430 protein; struc 99.5 3.3E-14 1.1E-18 102.6 10.2 73 13-98 8-85 (96)
353 1x5p_A Negative elongation fac 99.5 2.1E-14 7.2E-19 108.2 9.4 84 4-98 5-88 (97)
354 3zzy_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 112.6 8.8 84 8-97 22-106 (130)
355 3beg_B Splicing factor, argini 99.5 2E-14 7E-19 111.8 8.4 65 12-84 14-78 (115)
356 3egn_A RNA-binding protein 40; 99.5 2.9E-15 9.9E-20 121.7 3.7 85 10-97 41-130 (143)
357 1wg1_A KIAA1579 protein, homol 99.5 1.1E-14 3.7E-19 107.6 6.4 74 12-95 3-76 (88)
358 2voo_A Lupus LA protein; RNA-b 99.5 1.9E-14 6.5E-19 122.6 7.5 82 11-97 106-187 (193)
359 2hzc_A Splicing factor U2AF 65 99.5 4E-14 1.4E-18 104.4 8.0 73 11-93 3-86 (87)
360 3s6e_A RNA-binding protein 39; 99.5 6.8E-14 2.3E-18 107.6 8.7 77 341-421 6-92 (114)
361 2bz2_A Negative elongation fac 99.5 1.1E-13 3.8E-18 108.3 9.3 80 7-97 32-111 (121)
362 2pe8_A Splicing factor 45; RRM 99.5 1.6E-13 5.4E-18 104.3 9.8 83 11-96 5-93 (105)
363 1wf0_A TDP-43, TAR DNA-binding 99.5 4.1E-14 1.4E-18 104.5 5.5 77 12-98 3-79 (88)
364 3u1l_A PRE-mRNA-splicing facto 99.4 3.4E-13 1.2E-17 117.2 9.2 83 10-98 130-230 (240)
365 2dnr_A Synaptojanin-1; RRM dom 99.4 1.6E-12 5.6E-17 93.0 8.9 76 338-422 3-86 (91)
366 3tht_A Alkylated DNA repair pr 99.4 7.5E-13 2.6E-17 121.4 8.7 76 339-420 15-97 (345)
367 2dit_A HIV TAT specific factor 99.3 4.2E-12 1.4E-16 98.1 9.4 83 7-96 8-101 (112)
368 3v4m_A Splicing factor U2AF 65 99.3 3.9E-12 1.3E-16 96.6 7.2 82 12-96 3-96 (105)
369 1jmt_A Splicing factor U2AF 35 99.3 1.4E-12 4.7E-17 99.0 3.7 72 19-94 20-103 (104)
370 3tht_A Alkylated DNA repair pr 99.3 8.7E-12 3E-16 114.4 9.0 81 8-94 12-96 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.1E-11 1.8E-15 89.1 10.7 77 12-98 8-91 (100)
372 3ue2_A Poly(U)-binding-splicin 99.2 9.5E-12 3.3E-16 96.3 6.8 81 12-95 18-107 (118)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.9E-11 6.4E-16 93.8 7.6 76 339-420 15-94 (121)
374 1ufw_A Synaptojanin 2; RNP dom 99.2 3.5E-11 1.2E-15 86.5 7.3 75 337-420 10-93 (95)
375 3dxb_A Thioredoxin N-terminall 99.2 1.2E-10 4E-15 101.9 10.7 79 342-420 124-211 (222)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 4.1E-14 83.8 9.0 66 8-79 12-79 (121)
377 3s6e_A RNA-binding protein 39; 99.0 1.2E-09 4E-14 83.8 8.8 78 102-185 7-94 (114)
378 2l9w_A U4/U6 snRNA-associated- 98.9 1.1E-08 3.7E-13 74.8 8.6 71 341-417 20-95 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 5.6E-08 1.9E-12 69.5 6.4 74 12-97 5-86 (91)
380 1wey_A Calcipressin 1; structu 98.6 2.4E-07 8.3E-12 67.7 7.8 79 341-425 4-87 (104)
381 3dxb_A Thioredoxin N-terminall 98.5 2E-07 7E-12 81.1 7.7 79 14-95 124-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.3E-12 67.5 5.4 73 11-95 12-93 (95)
383 2dhx_A Poly (ADP-ribose) polym 98.0 4.5E-05 1.5E-09 55.5 9.6 90 11-115 5-99 (104)
384 1whv_A Poly(A)-specific ribonu 98.0 3.3E-05 1.1E-09 55.4 7.8 59 10-77 12-70 (100)
385 2l9w_A U4/U6 snRNA-associated- 97.9 4.1E-05 1.4E-09 56.1 7.1 73 101-181 20-97 (117)
386 1wwh_A Nucleoporin 35, nucleop 97.7 0.00012 4.1E-09 55.2 7.3 70 341-418 23-93 (119)
387 3ctr_A Poly(A)-specific ribonu 97.7 7.2E-05 2.4E-09 53.9 5.6 54 15-77 7-60 (101)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00064 2.2E-08 48.9 10.7 80 343-422 2-88 (91)
389 1uw4_A UPF3X; nonsense mediate 97.6 0.00026 8.8E-09 51.0 8.3 72 15-86 2-75 (91)
390 2dhx_A Poly (ADP-ribose) polym 97.5 0.00083 2.8E-08 48.9 9.6 71 341-420 7-82 (104)
391 1whv_A Poly(A)-specific ribonu 97.4 0.00074 2.5E-08 48.4 8.1 54 343-405 17-70 (100)
392 3p3d_A Nucleoporin 53; structu 97.2 0.00086 3E-08 51.2 6.4 77 341-419 6-96 (132)
393 2l08_A Regulator of nonsense t 97.1 0.0015 5.3E-08 47.1 6.6 80 103-182 10-94 (97)
394 3ctr_A Poly(A)-specific ribonu 97.0 0.00093 3.2E-08 48.1 5.0 54 343-405 7-60 (101)
395 1wwh_A Nucleoporin 35, nucleop 96.7 0.0045 1.6E-07 46.6 7.0 67 8-83 18-84 (119)
396 2l08_A Regulator of nonsense t 96.7 0.0016 5.5E-08 47.0 4.0 74 13-86 8-83 (97)
397 1wey_A Calcipressin 1; structu 96.6 0.0023 7.9E-08 46.8 4.6 73 102-182 5-82 (104)
398 3pq1_A Poly(A) RNA polymerase; 96.3 0.00096 3.3E-08 63.3 1.4 62 8-75 47-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0028 9.5E-08 60.2 3.4 56 342-403 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 93.4 0.042 1.4E-06 41.9 2.6 69 13-84 6-88 (132)
401 3d45_A Poly(A)-specific ribonu 92.6 0.42 1.4E-05 46.3 8.9 56 14-78 440-495 (507)
402 4eyt_A Telomerase associated p 86.9 5.9 0.0002 27.5 8.4 56 341-404 11-66 (129)
403 3d45_A Poly(A)-specific ribonu 86.0 1.7 5.8E-05 42.0 7.5 55 342-405 440-494 (507)
404 4e8u_A Putative uncharacterize 80.4 7.3 0.00025 31.2 7.7 55 342-399 12-77 (172)
405 4eyt_A Telomerase associated p 70.5 21 0.00071 24.7 6.8 57 12-76 10-66 (129)
406 4e8u_A Putative uncharacterize 41.4 49 0.0017 26.4 5.5 51 16-69 14-75 (172)
407 2g0c_A ATP-dependent RNA helic 37.8 22 0.00074 23.9 2.6 59 353-420 12-75 (76)
408 2f06_A Conserved hypothetical 29.0 1.9E+02 0.0063 21.8 8.9 109 27-162 19-130 (144)
409 2i9x_A Putative septation prot 26.2 1.1E+02 0.0038 21.3 4.6 26 368-393 5-30 (87)
410 3fut_A Dimethyladenosine trans 25.6 69 0.0024 27.8 4.4 30 14-44 110-139 (271)
411 2ia9_A Putative septation prot 22.4 1.4E+02 0.0047 21.4 4.6 26 368-393 5-30 (100)
412 2i9z_A Putative septation prot 21.4 1.5E+02 0.0052 21.4 4.7 26 368-393 5-30 (105)
413 2w7a_A LINE-1 ORF1P; RNA-bindi 21.1 2.3E+02 0.0079 20.2 5.9 76 342-417 3-98 (100)
414 3uzu_A Ribosomal RNA small sub 20.8 46 0.0016 29.0 2.3 33 14-46 114-146 (279)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.6e-46 Score=344.86 Aligned_cols=255 Identities=19% Similarity=0.316 Sum_probs=210.3
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
...+.+.++|||+|||+++|+++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|.+|++ +++.. +.| +
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~-~~g--~ 108 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKV-VGQ--N 108 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCE-ETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcE-eCC--c
Confidence 445677899999999999999999999999999999999998743 57999999999999999995 77654 544 7
Q ss_pred cceeeccCcccccccceEEEecCCCCCCHHHHHHhccccC-CeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 014217 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (428)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (428)
.+.+.+.. .++|||+|||..+++++|+++|+.|| .|..+.+..+..|.++|+|||+|.+.++|.+|++.|++.
T Consensus 109 ~i~v~~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 109 EIIVSHLT------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ECEEEECC------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEEEEECC------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 88887763 67999999999999999999999999 999999999888889999999999999999999999998
Q ss_pred ccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 014217 167 HKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQ 246 (428)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (428)
. +.|+. |.|.++.+.......
T Consensus 183 ~-~~g~~--l~v~~a~~~~~~~~~-------------------------------------------------------- 203 (292)
T 2ghp_A 183 K-IEGYT--LVTKVSNPLEKSKRT-------------------------------------------------------- 203 (292)
T ss_dssp E-ETTEE--CEEEECCCC--------------------------------------------------------------
T ss_pred E-eCCcE--EEEEECCCCcccccc--------------------------------------------------------
Confidence 7 67765 888888654211100
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 247 NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVA 326 (428)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (428)
T Consensus 204 -------------------------------------------------------------------------------- 203 (292)
T 2ghp_A 204 -------------------------------------------------------------------------------- 203 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHhhcCCCeEEEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHh
Q 014217 327 NSNPSTSSSGGTGPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKA-TGVSKCFGFVSYESPASAQNAIAMM 404 (428)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~F~~~e~A~~A~~~l 404 (428)
.....+.++|||+|||.+ +++++|+++|+.||.|.+|+|+.+.. +|.++|||||+|.+.++|.+|+ .|
T Consensus 204 ---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 204 ---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp ------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred ---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 001224599999999999 99999999999999999999999874 4999999999999999999999 99
Q ss_pred cCceeCCeEEEEEEecCCc
Q 014217 405 NGCQLGGKKLKVQLKRDNK 423 (428)
Q Consensus 405 ~g~~l~g~~i~v~~a~~~~ 423 (428)
||..|+|+.|+|.||++|+
T Consensus 274 ~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKKP 292 (292)
T ss_dssp TTEEETTEEEEEEECCCCC
T ss_pred cCCEECCcEEEEEEecCCC
Confidence 9999999999999999874
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.3e-45 Score=338.78 Aligned_cols=250 Identities=21% Similarity=0.365 Sum_probs=220.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
++...++++|||+|||+++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++.||+.. +.| +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~ 85 (284)
T 3smz_A 16 ERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSR-LRE--R 85 (284)
T ss_dssp HHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred hccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCe-eCC--e
Confidence 34566789999999999999999999999999 988887 4567899999999999999999999876 444 7
Q ss_pred cceeeccCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 014217 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK 166 (428)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (428)
.+.+.+.. ..++|||+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|++.
T Consensus 86 ~i~v~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 86 ELSVQLQP-----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp ECEEEECC-----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEecC-----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 88887754 34799999999999999999999999999999998775 8889999999999999999999999997
Q ss_pred ccCCCCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 014217 167 HKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQ 246 (428)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (428)
. ++|+. |.|.++......
T Consensus 161 ~-~~g~~--i~v~~a~~~~~~----------------------------------------------------------- 178 (284)
T 3smz_A 161 P-LGPRT--LYVHWTDAGQLT----------------------------------------------------------- 178 (284)
T ss_dssp E-ETTEE--CEEEECCGGGCC-----------------------------------------------------------
T ss_pred E-eCCcE--EEEEECCCCCCC-----------------------------------------------------------
Confidence 6 67765 888888553100
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 247 NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVA 326 (428)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (428)
T Consensus 179 -------------------------------------------------------------------------------- 178 (284)
T 3smz_A 179 -------------------------------------------------------------------------------- 178 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 014217 327 NSNPSTSSSGGTGPPGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 405 (428)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 405 (428)
......++|||+|||.++ ++++|+++|+.||.|.+|+|+.+. +|.++|+|||+|.+.++|.+|+..||
T Consensus 179 ----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 179 ----------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp ----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred ----------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 011245899999999996 999999999999999999999986 89999999999999999999999999
Q ss_pred CceeCCeEEEEEEecCCcCC
Q 014217 406 GCQLGGKKLKVQLKRDNKQN 425 (428)
Q Consensus 406 g~~l~g~~i~v~~a~~~~~~ 425 (428)
|..|+|++|+|+|++++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999887653
No 3
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.5e-33 Score=239.50 Aligned_cols=171 Identities=42% Similarity=0.786 Sum_probs=156.5
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCC--CccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.++++|||+|||+++|+++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|++|++.||+..+..+..+.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367899999999999999999999999999999999999876 899999999999999999999999988888888888
Q ss_pred eeeccCccccc--ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCc
Q 014217 90 QVKYADGELER--LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (428)
Q Consensus 90 ~~~~~~~~~~~--~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~ 167 (428)
.+.+....... ..++|||+|||..+++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|+|..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 81 QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred EEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 88887654433 4789999999999999999999999999999999999889999999999999999999999999988
Q ss_pred cCCCCcceEEEEeCC
Q 014217 168 KMEGSSVPLVVKWAD 182 (428)
Q Consensus 168 ~~~g~~~~l~v~~a~ 182 (428)
+..|...+|.|.||.
T Consensus 161 ~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 161 TMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCSSCCEEEECC
T ss_pred ccCCCCCCeEEEecC
Confidence 777766679999873
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-33 Score=246.26 Aligned_cols=167 Identities=29% Similarity=0.493 Sum_probs=149.1
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.++|||+|||.++++++|+++|+.||.|.+|+|+++. +|.++|||||+|.+.++|.+|++.+++.. +.|+. +.+.+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g~~--i~~~~ 91 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKGKP--VRIMW 91 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCCcc--ccccc
Confidence 5789999999999999999999999999999999876 78899999999999999999999999976 67765 67777
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+.........
T Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (213)
T 4f02_A 92 SQRDPSLRKS---------------------------------------------------------------------- 101 (213)
T ss_dssp CCCCTHHHHH----------------------------------------------------------------------
T ss_pred cccccccccc----------------------------------------------------------------------
Confidence 7554322211
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
T Consensus 102 -------------------------------------------------------------------------------- 101 (213)
T 4f02_A 102 -------------------------------------------------------------------------------- 101 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
...+|||+|||.++|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|||..|+|++|+|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 23789999999999999999999999999999999985 5589999999999999999999999999999999999998
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
.++
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 764
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.7e-33 Score=242.72 Aligned_cols=182 Identities=27% Similarity=0.446 Sum_probs=155.6
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.++|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|++.. +.|+. |.|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~--l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGGRN--IKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC-CC--CEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCCee--EEEec
Confidence 6899999999999999999999999999999998876 78899999999999999999999999977 77776 78877
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+...............
T Consensus 105 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 120 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAE---------------------------------------------------------------- 120 (216)
T ss_dssp CSCCGGGHHHHHHHHH----------------------------------------------------------------
T ss_pred CCCccccchhhhhhhc----------------------------------------------------------------
Confidence 7654322221111100
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
...
T Consensus 121 -----------------------------------------------------------------------------~~~ 123 (216)
T 2qfj_A 121 -----------------------------------------------------------------------------EAR 123 (216)
T ss_dssp -----------------------------------------------------------------------------HHT
T ss_pred -----------------------------------------------------------------------------ccC
Confidence 011
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.+++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 44899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 014217 421 DNKQNKP 427 (428)
Q Consensus 421 ~~~~~~~ 427 (428)
.++...+
T Consensus 204 ~~~~~~~ 210 (216)
T 2qfj_A 204 TPPMPLL 210 (216)
T ss_dssp SCSSTTS
T ss_pred CCCCCCC
Confidence 9876543
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=236.71 Aligned_cols=165 Identities=31% Similarity=0.545 Sum_probs=148.9
Q ss_pred ceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
++|||+|||.++++++|+++|+.||.|..+.+..++++.++|+|||+|.+.++|.+|++.+++.. +.|+. +.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~--i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ-IENNI--VKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCCCe--eEEEEcC
Confidence 58999999999999999999999999999999999988899999999999999999999999987 66665 7777774
Q ss_pred CHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCCCC
Q 014217 183 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 262 (428)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (428)
....
T Consensus 78 ~~~~---------------------------------------------------------------------------- 81 (166)
T 3md3_A 78 QSQQ---------------------------------------------------------------------------- 81 (166)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3200
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGPPG 342 (428)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (428)
....+.
T Consensus 82 --------------------------------------------------------------------------~~~~~~ 87 (166)
T 3md3_A 82 --------------------------------------------------------------------------SSSDDT 87 (166)
T ss_dssp --------------------------------------------------------------------------CCCTTC
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 011245
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|+|||+|.+.++|.+|+..|||..++|++|+|+||+
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 899999999999999999999999999999999998899999999999999999999999999999999999999986
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.5e-33 Score=244.43 Aligned_cols=175 Identities=25% Similarity=0.412 Sum_probs=150.0
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
....+.++|||+|||+++|+++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|.+||+.+|+.. +.| +.
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g--~~ 86 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG--KP 86 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--cc
Confidence 344567899999999999999999999999999999999999999999999999999999999999998875 444 77
Q ss_pred ceeeccCcccc---cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 89 LQVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 89 ~~~~~~~~~~~---~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
+++.++..... ....+|||+|||..+++++|+++|+.||.|..+.|+.+.. .++|||||+|.+.++|.+|++.|||
T Consensus 87 i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 87 VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCC
Confidence 77777653322 2357899999999999999999999999999999988753 4799999999999999999999999
Q ss_pred CccCCCCcceEEEEeCCCHHHHHHH
Q 014217 166 KHKMEGSSVPLVVKWADTEKERQAR 190 (428)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~~~ 190 (428)
.. ++|+. |.|.++.++.++...
T Consensus 166 ~~-~~g~~--i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 166 ML-LNDRK--VFVGRFKSRKEREAE 187 (213)
T ss_dssp CE-ETTEE--CEEEECCCHHHHHHH
T ss_pred CE-ECCEE--EEEEEcCCCcccchh
Confidence 87 77775 899999887655443
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.1e-32 Score=228.68 Aligned_cols=165 Identities=27% Similarity=0.520 Sum_probs=150.3
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
.+++|||+|||+++|+++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+ .+ +.+.+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~ 77 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-QT--KTIKVS 77 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc-CC--ceEEEE
Confidence 368999999999999999999999999999999999998999999999999999999999999998754 44 788888
Q ss_pred ccCcccc-cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 93 ~~~~~~~-~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
++.+... ...++|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|+|.. +.
T Consensus 78 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 156 (167)
T 1fxl_A 78 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK-PS 156 (167)
T ss_dssp ECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc-cC
Confidence 8765443 346889999999999999999999999999999998876 78889999999999999999999999987 88
Q ss_pred CCcceEEEEeC
Q 014217 171 GSSVPLVVKWA 181 (428)
Q Consensus 171 g~~~~l~v~~a 181 (428)
|+.++|.|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 88888999886
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.6e-32 Score=233.66 Aligned_cols=177 Identities=21% Similarity=0.411 Sum_probs=146.9
Q ss_pred ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEE
Q 014217 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (428)
Q Consensus 99 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~ 177 (428)
....++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++. ++.. +.|+. |.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g~~--l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDGRV--VE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETTEE--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECCEE--ee
Confidence 3457899999999999999999999999999999998886 688999999999999999999976 6655 77765 77
Q ss_pred EEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCC
Q 014217 178 VKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPP 257 (428)
Q Consensus 178 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
|.++.........
T Consensus 86 v~~~~~~~~~~~~------------------------------------------------------------------- 98 (196)
T 1l3k_A 86 PKRAVSREDSQRP------------------------------------------------------------------- 98 (196)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred eecccCccccccc-------------------------------------------------------------------
Confidence 8777554211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 258 VNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGG 337 (428)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (428)
.
T Consensus 99 -------------------------------------------------------------------------------~ 99 (196)
T 1l3k_A 99 -------------------------------------------------------------------------------G 99 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 112448999999999999999999999999999999999988999999999999999999999987 8999999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+|.++....
T Consensus 179 ~a~~k~~~~ 187 (196)
T 1l3k_A 179 KALSKQEMA 187 (196)
T ss_dssp ECC------
T ss_pred ecCChhHhc
Confidence 999887654
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.7e-32 Score=228.57 Aligned_cols=163 Identities=27% Similarity=0.506 Sum_probs=147.7
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.++|||+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.+++.. +.|+. +.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~--l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRNKR--LKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCCcE--EEEEe
Confidence 4789999999999999999999999999999998875 78889999999999999999999999987 67765 78887
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+.+..
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (168)
T 1b7f_A 80 ARPGG--------------------------------------------------------------------------- 84 (168)
T ss_dssp CCCCS---------------------------------------------------------------------------
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 74320
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
...
T Consensus 85 -----------------------------------------------------------------------------~~~ 87 (168)
T 1b7f_A 85 -----------------------------------------------------------------------------ESI 87 (168)
T ss_dssp -----------------------------------------------------------------------------STT
T ss_pred -----------------------------------------------------------------------------ccC
Confidence 011
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~~ 418 (428)
+.++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|+|||+|.+.++|.+|+..|||..++| ++|+|+|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 34899999999999999999999999999999999998899999999999999999999999999999988 9999998
Q ss_pred e
Q 014217 419 K 419 (428)
Q Consensus 419 a 419 (428)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.5e-32 Score=229.09 Aligned_cols=163 Identities=27% Similarity=0.569 Sum_probs=146.8
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
+++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|+|||+|.+.++|.+|++.|++.. +.|+. +.|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~--l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQTKT--IKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCCce--EEEEe
Confidence 4789999999999999999999999999999998887 88999999999999999999999999977 66665 77877
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+.+..
T Consensus 79 ~~~~~--------------------------------------------------------------------------- 83 (167)
T 1fxl_A 79 ARPSS--------------------------------------------------------------------------- 83 (167)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 74320
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
...
T Consensus 84 -----------------------------------------------------------------------------~~~ 86 (167)
T 1fxl_A 84 -----------------------------------------------------------------------------ASI 86 (167)
T ss_dssp -----------------------------------------------------------------------------GGG
T ss_pred -----------------------------------------------------------------------------ccC
Confidence 011
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeE--EEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK--LKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~--i~v~~ 418 (428)
..++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..++|+. |+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 3488999999999999999999999999999999999889999999999999999999999999999999965 88888
Q ss_pred e
Q 014217 419 K 419 (428)
Q Consensus 419 a 419 (428)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.8e-32 Score=228.00 Aligned_cols=165 Identities=29% Similarity=0.520 Sum_probs=149.7
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .| +.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV-RN--KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe-CC--cEEEEE
Confidence 578999999999999999999999999999999999988999999999999999999999999988754 44 888888
Q ss_pred ccCcccc-cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 93 ~~~~~~~-~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
++.+... ...++|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|++.. +.
T Consensus 79 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 157 (168)
T 1b7f_A 79 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI-PE 157 (168)
T ss_dssp ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE-ec
Confidence 8865443 346899999999999999999999999999999998887 88899999999999999999999999987 77
Q ss_pred CCcceEEEEeC
Q 014217 171 GSSVPLVVKWA 181 (428)
Q Consensus 171 g~~~~l~v~~a 181 (428)
|...+|.|.+|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 76667888876
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.6e-32 Score=229.70 Aligned_cols=167 Identities=29% Similarity=0.537 Sum_probs=148.8
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCC---CcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g---~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
.++|||+|||.++++++|+++|+.||.|..+.++++..+ .++|||||+|.+.++|.+|++.|++..++.+...++.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 578999999999999999999999999999999888755 78999999999999999999999998877777777888
Q ss_pred EeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
.++.....
T Consensus 83 ~~~~~~~~------------------------------------------------------------------------ 90 (175)
T 3nmr_A 83 KPADSEKN------------------------------------------------------------------------ 90 (175)
T ss_dssp EECGGGCC------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 77744310
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
.
T Consensus 91 -------------------------------------------------------------------------------~ 91 (175)
T 3nmr_A 91 -------------------------------------------------------------------------------N 91 (175)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC---CeEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG---GKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~---g~~i~ 415 (428)
....++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+..|||..+. |++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 1144899999999999999999999999999999999996 7999999999999999999999999998775 49999
Q ss_pred EEEec
Q 014217 416 VQLKR 420 (428)
Q Consensus 416 v~~a~ 420 (428)
|+||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3.2e-32 Score=229.37 Aligned_cols=164 Identities=25% Similarity=0.478 Sum_probs=146.5
Q ss_pred cceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
+++|||+|||.++++++|+++|+.||.|..+.+.++. +|.++|||||+|.+.++|.+|++. + ..++|+. +.+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g~~--i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDGKV--IDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETTEE--CCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCCeE--ccccc
Confidence 5799999999999999999999999999999999885 789999999999999999999984 3 3367765 66777
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+.......
T Consensus 78 ~~~~~~~~------------------------------------------------------------------------ 85 (167)
T 2cjk_A 78 AIPRDEQD------------------------------------------------------------------------ 85 (167)
T ss_dssp CCCHHHHH------------------------------------------------------------------------
T ss_pred ccchhhcc------------------------------------------------------------------------
Confidence 76543211
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
T Consensus 86 -------------------------------------------------------------------------------- 85 (167)
T 2cjk_A 86 -------------------------------------------------------------------------------- 85 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++ +||..++|++|+|+||+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 23799999999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
++.
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 15
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=6.2e-31 Score=231.17 Aligned_cols=170 Identities=20% Similarity=0.347 Sum_probs=148.3
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
......++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+.. +.+ +.
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~ 99 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGG--RN 99 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC---CC
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCC--ee
Confidence 345567899999999999999999999999999999999999889999999999999999999999998875 444 77
Q ss_pred ceeeccCcccc------------cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHH
Q 014217 89 LQVKYADGELE------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQ 155 (428)
Q Consensus 89 ~~~~~~~~~~~------------~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~ 155 (428)
|.+.++..... ...++|||+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 88877654322 225799999999999999999999999999999998885 78889999999999999
Q ss_pred HHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 156 ALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 156 a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
|.+|++.|++.. ++|+. |.|.++...
T Consensus 180 A~~A~~~l~g~~-~~g~~--i~V~~a~~~ 205 (216)
T 2qfj_A 180 SQDAVSSMNLFD-LGGQY--LRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHTTCB-CSSSB--CEEEECSSC
T ss_pred HHHHHHHccCCE-eCCcE--EEEEEecCC
Confidence 999999999987 78876 888888654
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-31 Score=220.60 Aligned_cols=161 Identities=21% Similarity=0.399 Sum_probs=143.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
++|||+|||+++|+++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|.+|++.||+..+ .+ +.+.+.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI-EN--NIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCcc-CC--CeeEEEEc
Confidence 6899999999999999999999999999999999984 78999999999999999999999998764 44 78888777
Q ss_pred Cccc---ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 95 DGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 95 ~~~~---~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
.... ....++|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|+|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 155 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LN 155 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ET
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cC
Confidence 5433 2336789999999999999999999999999999998874 78899999999999999999999999987 77
Q ss_pred CCcceEEEEeCC
Q 014217 171 GSSVPLVVKWAD 182 (428)
Q Consensus 171 g~~~~l~v~~a~ 182 (428)
|+. |.|.||.
T Consensus 156 g~~--i~v~~a~ 165 (166)
T 3md3_A 156 GRP--LRINWAA 165 (166)
T ss_dssp TEE--CEEEESC
T ss_pred CcE--EEEEecC
Confidence 765 8888875
No 17
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=7.7e-31 Score=226.95 Aligned_cols=174 Identities=23% Similarity=0.402 Sum_probs=144.8
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...++...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+||+. ++. .+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~~~g-- 81 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH-KVDG-- 81 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC-EETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC-EECC--
Confidence 455677889999999999999999999999999999999999999999999999999999999999977 444 3555
Q ss_pred CcceeeccCccccc-------ccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHH
Q 014217 87 SPLQVKYADGELER-------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (428)
Q Consensus 87 ~~~~~~~~~~~~~~-------~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~ 158 (428)
+.+.+.++...... ..++|||+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+
T Consensus 82 ~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp EECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred EEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 77777776543222 24799999999999999999999999999999998886 78899999999999999999
Q ss_pred HHHHHcCCccCCCCcceEEEEeCCCHHHHH
Q 014217 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQ 188 (428)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~ 188 (428)
|+.. ++.. ++|+. |.|.++.++.+..
T Consensus 162 A~~~-~~~~-~~G~~--i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 162 IVIQ-KYHT-VNGHN--CEVRKALSKQEMA 187 (196)
T ss_dssp HHHC-SCCE-ETTEE--CEEEECC------
T ss_pred HHHh-CCcE-ECCEE--EEEEecCChhHhc
Confidence 9986 6655 78876 8889988765543
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.9e-29 Score=229.66 Aligned_cols=266 Identities=21% Similarity=0.377 Sum_probs=150.4
Q ss_pred cccceEEEecCCCCCCHHHHH----HhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Q 014217 100 RLEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~ 175 (428)
...++|||+|||.++++++|+ ++|+.||.|..|++.+ +|.++|||||+|.+.++|.+|++.|++.. +.|+.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~-- 81 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYDKP-- 81 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCe-eCCcE--
Confidence 346899999999999999966 8999999999999886 67789999999999999999999999977 67765
Q ss_pred EEEEeCCCHHHHHHHHHHH----HhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc
Q 014217 176 LVVKWADTEKERQARRAQK----AQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGF 251 (428)
Q Consensus 176 l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (428)
|.|.++............. ................. ..........+... ...+.. ...
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~----------~~~ 144 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAT-KKAVQGGGATPVVG------AVQGPV----------PGM 144 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhh-hhhccCcCCcccCC------CCCCCC----------CCC
Confidence 8888886544221110000 00000000000000000 00000000000000 000000 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 252 HGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPS 331 (428)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (428)
.++.........+.+.. +..+.+...++.+.... ...+....... .......
T Consensus 145 ~~~~~~~~~~~~~~g~~-----~~~~~p~~~~~~~~~~~-----------~~~~~~~~~~~------------~~~~~~~ 196 (282)
T 3pgw_A 145 PPMTQAPRIMHHMPGQP-----PYMPPPGMIPPPGLAPG-----------QIPPGAMPPQQ------------LMPGQMP 196 (282)
T ss_pred CcccccccccccCCCCC-----CCCCCCCCCCCCCCCcc-----------ccCcccCcccc------------cCccccC
Confidence 00000000000000000 00000000000000000 00000000000 0000000
Q ss_pred CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-
Q 014217 332 TSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 410 (428)
Q Consensus 332 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~- 410 (428)
.........+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|+..|||..|+
T Consensus 197 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~ 271 (282)
T 3pgw_A 197 PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQ 271 (282)
T ss_pred ccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCC
Confidence 11111234467999999999999999999999999999999998664 589999999999999999999999999
Q ss_pred CeEEEEEEec
Q 014217 411 GKKLKVQLKR 420 (428)
Q Consensus 411 g~~i~v~~a~ 420 (428)
|+.|+|+|||
T Consensus 272 g~~l~v~~ak 281 (282)
T 3pgw_A 272 NNAMKISFAK 281 (282)
T ss_pred CCEEEEEEec
Confidence 9999999997
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=6.1e-31 Score=221.48 Aligned_cols=163 Identities=26% Similarity=0.399 Sum_probs=143.2
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. + ..+.| +.+.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g--~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDG--KVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETT--EECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCC--eEcccc
Confidence 578999999999999999999999999999999999998999999999999999999999985 2 23555 677777
Q ss_pred ccCcccc-cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 93 ~~~~~~~-~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
++..... ...++|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++ +++.. ++
T Consensus 77 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~-~~ 154 (167)
T 2cjk_A 77 RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID-FK 154 (167)
T ss_dssp ECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC-SS
T ss_pred cccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE-eC
Confidence 7654333 336799999999999999999999999999999998885 78999999999999999999998 77765 77
Q ss_pred CCcceEEEEeCCCH
Q 014217 171 GSSVPLVVKWADTE 184 (428)
Q Consensus 171 g~~~~l~v~~a~~~ 184 (428)
|+. |.|.++.++
T Consensus 155 g~~--i~V~~a~pk 166 (167)
T 2cjk_A 155 DRK--IEIKRAEPR 166 (167)
T ss_dssp SSC--EEEEECCCC
T ss_pred CeE--EEEeecCCC
Confidence 776 899988763
No 20
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=8.9e-30 Score=220.59 Aligned_cols=183 Identities=27% Similarity=0.446 Sum_probs=145.6
Q ss_pred cceEEEecCCCCCCHHHHHHhcccc----C-------CeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
.++|||+|||.++++++|+++|+.| | .|..+.+.. ++|||||+|.+.++|.+|+ .|++.. +.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~-~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEE-ET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCE-Ec
Confidence 5899999999999999999999999 5 566666643 4899999999999999999 799976 77
Q ss_pred CCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 014217 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (428)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (428)
|+. |.|.++...... +..
T Consensus 77 g~~--i~v~~~~~~~~~---------------~~~--------------------------------------------- 94 (198)
T 2yh0_A 77 GQS--LKIRRPHDYQPL---------------PGM--------------------------------------------- 94 (198)
T ss_dssp TEE--EEEECCCCCCCC---------------CCS---------------------------------------------
T ss_pred Cce--EEEeCCCCCCCC---------------CCC---------------------------------------------
Confidence 765 788777442000 000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (428)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (428)
....... .+
T Consensus 95 -------------------------~~~~~~~---------------------~~------------------------- 103 (198)
T 2yh0_A 95 -------------------------SENPSVY---------------------VP------------------------- 103 (198)
T ss_dssp -------------------------SSCSSCC---------------------CT-------------------------
T ss_pred -------------------------cCCCcCC---------------------CC-------------------------
Confidence 0000000 00
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 331 STSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 331 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
.........+.++|||+|||.++++++|+++|+.||.|.+|++..++.+|.++|||||+|.+.++|.+|+..|||..|+
T Consensus 104 -~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 104 -GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp -TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred -CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 0000012235699999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEecCCcCC
Q 014217 411 GKKLKVQLKRDNKQN 425 (428)
Q Consensus 411 g~~i~v~~a~~~~~~ 425 (428)
|+.|+|++++++..+
T Consensus 183 g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 183 DKKLLVQRASVGAKN 197 (198)
T ss_dssp TEECEEEESCCCCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999988764
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=4.3e-30 Score=217.42 Aligned_cols=157 Identities=30% Similarity=0.515 Sum_probs=139.1
Q ss_pred cceEEEecCCCCCCHHHHHHhcccc----C-------CeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 014217 102 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (428)
Q Consensus 102 ~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (428)
.++|||+|||.++++++|+++|+.| | .|..+.+.++ +|+|||+|.+.++|.+|+ .+++.. +.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~-~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCE-ET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcE-ec
Confidence 5799999999999999999999999 6 7777777654 899999999999999999 899977 67
Q ss_pred CCcceEEEEeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 014217 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (428)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (428)
|+. +.|.++....
T Consensus 77 g~~--i~v~~~~~~~----------------------------------------------------------------- 89 (172)
T 2g4b_A 77 GQS--LKIRRPHDYQ----------------------------------------------------------------- 89 (172)
T ss_dssp TEE--CEEECCSSCC-----------------------------------------------------------------
T ss_pred Cce--eeecCCcccC-----------------------------------------------------------------
Confidence 775 6776653210
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (428)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (428)
T Consensus 90 -------------------------------------------------------------------------------- 89 (172)
T 2g4b_A 90 -------------------------------------------------------------------------------- 89 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 331 STSSSGGTGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 331 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+..|||..++
T Consensus 90 -------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 90 -------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp -------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred -------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 0012489999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEe
Q 014217 411 GKKLKVQLK 419 (428)
Q Consensus 411 g~~i~v~~a 419 (428)
|++|+|+||
T Consensus 163 g~~l~V~~A 171 (172)
T 2g4b_A 163 DKKLLVQRA 171 (172)
T ss_dssp TEECEEEEC
T ss_pred CeEEEEEeC
Confidence 999999997
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=5.1e-31 Score=223.76 Aligned_cols=166 Identities=19% Similarity=0.300 Sum_probs=141.0
Q ss_pred ccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 99 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
....++|||+|||.++++++|+++|+.||.+..+.+....+|.++|||||+|.+.++|.+|+ .|++.. +.|+. |.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~~--l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLK-VFGNE--IKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEE-ETTEE--EEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCE-eCCeE--EEE
Confidence 34468999999999999999999999999876644444457778999999999999999999 599977 66665 888
Q ss_pred EeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
.++.....
T Consensus 86 ~~~~~~~~------------------------------------------------------------------------ 93 (175)
T 1fje_B 86 EKPKGRDS------------------------------------------------------------------------ 93 (175)
T ss_dssp ECCCCSSC------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 88754210
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
..
T Consensus 94 ------------------------------------------------------------------------------~~ 95 (175)
T 1fje_B 94 ------------------------------------------------------------------------------KK 95 (175)
T ss_dssp ------------------------------------------------------------------------------ST
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 1245899999999999999999999999988766 35889999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014217 419 KRDNK 423 (428)
Q Consensus 419 a~~~~ 423 (428)
|++++
T Consensus 171 a~~k~ 175 (175)
T 1fje_B 171 TGEKG 175 (175)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98764
No 23
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.6e-29 Score=227.56 Aligned_cols=175 Identities=22% Similarity=0.269 Sum_probs=155.3
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
....++|||+|||+++|+++|+++|+.||.|.+++++.+..+|+++|||||+|.+.++|.+|++.|++.. +.| +.+.
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~ 168 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP-LGP--RTLY 168 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEE
Confidence 3456899999999999999999999999999999999999899999999999999999999999999875 444 8888
Q ss_pred eeccCccccc----ccceEEEecCCCCC-CHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 014217 91 VKYADGELER----LEHKLFIGMLPKNV-SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (428)
Q Consensus 91 ~~~~~~~~~~----~~~~v~v~nlp~~~-t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~ 165 (428)
+.++...... ..++|||+|||..+ ++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|+|
T Consensus 169 v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 169 VHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp EEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred EEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8888654432 36799999999995 999999999999999999999998999999999999999999999999999
Q ss_pred CccCCCCcceEEEEeCCCHHHHHHHH
Q 014217 166 KHKMEGSSVPLVVKWADTEKERQARR 191 (428)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (428)
.. ++|+. |.|.++.+........
T Consensus 249 ~~-~~g~~--l~v~~a~~~~~~~~~~ 271 (284)
T 3smz_A 249 LS-LGGSH--LRVSFCAPGPPGRSML 271 (284)
T ss_dssp CE-ETTEE--CEEEECCSSSCHHHHH
T ss_pred Cc-cCCeE--EEEEEecCCCcccchh
Confidence 87 67775 8999998776544443
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=5.1e-29 Score=215.45 Aligned_cols=194 Identities=19% Similarity=0.347 Sum_probs=140.2
Q ss_pred cceEEEecCC-CCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
.++|||+||| ..+++++|+++|+.||.|.+|+++.+ ++|+|||+|.+.++|..|++.|||.. +.|+. |.|.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~~--l~v~~ 76 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNF-MFGQK--MNVCV 76 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCE-ECCce--EEEEE
Confidence 5789999999 89999999999999999999999875 37899999999999999999999987 67765 88888
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+..... .+... ... .
T Consensus 77 s~~~~~---------------~p~~~--------------------~~~--~---------------------------- 91 (205)
T 3tyt_A 77 SKQPAI---------------MPGQS--------------------YGL--E---------------------------- 91 (205)
T ss_dssp CSCSCC---------------CCCSC--------------------CBC--T----------------------------
T ss_pred ccCCcc---------------CCCcc--------------------ccc--c----------------------------
Confidence 854310 00000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
...... ..+.+. +...+.. +..........
T Consensus 92 --------------~~~~~~----~~~~~~--------------~~~r~~~------------------~~~~~~~~~~~ 121 (205)
T 3tyt_A 92 --------------DGSCSY----KDFSES--------------RNNRFST------------------PEQAAKNRIQH 121 (205)
T ss_dssp --------------TSCBSE----EECTTC--------------TTCSCSS------------------HHHHTTSCCCC
T ss_pred --------------cCCccc----cccCCC--------------ccccccC------------------cccccccccCC
Confidence 000000 000000 0000000 00000000123
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCe--EEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe----EE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRV--LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK----KL 414 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i--~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~----~i 414 (428)
+.++|||+|||.++|+++|+++|+.||.| .+|+++.++ +..+|+|||+|.+.++|.+|+..|||..|+|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 56899999999999999999999999999 899998774 55679999999999999999999999999886 67
Q ss_pred EEEEe
Q 014217 415 KVQLK 419 (428)
Q Consensus 415 ~v~~a 419 (428)
.|+|+
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77775
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=6.3e-29 Score=214.89 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=135.0
Q ss_pred ccCceEEEeCCC-CCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 12 EERVKLFVGQVP-KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 12 ~~~~~l~v~nLp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
.++++|||+||| +++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+||+.||+..+ .| +.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~-~g--~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM-FG--QKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CC--ceEE
Confidence 457899999999 899999999999999999999998763 58999999999999999999999764 44 6777
Q ss_pred eeccCccc--------------------------------------ccccceEEEecCCCCCCHHHHHHhccccCCe--E
Q 014217 91 VKYADGEL--------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTI--K 130 (428)
Q Consensus 91 ~~~~~~~~--------------------------------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v--~ 130 (428)
+.+++... ....++|||+|||.++++++|+++|+.||.| .
T Consensus 74 v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 74 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp EEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS
T ss_pred EEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 77653210 0113579999999999999999999999999 8
Q ss_pred EEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCC--cceEEEEeC
Q 014217 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS--SVPLVVKWA 181 (428)
Q Consensus 131 ~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~--~~~l~v~~a 181 (428)
.+++..+. +.++|+|||+|.+.++|.+|+..||+.. +.|. ..|+.|+++
T Consensus 154 ~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~-~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQ-MKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCE-ECCSSSSSCEECEEE
T ss_pred EEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCC-ccCCCCCcceEEEec
Confidence 89998876 4456999999999999999999999987 5444 457787775
No 26
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.1e-28 Score=219.79 Aligned_cols=158 Identities=27% Similarity=0.463 Sum_probs=141.8
Q ss_pred cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEE
Q 014217 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (428)
...++|||+|||.++|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|..|+..+++.. +.|+. |.|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~-i~g~~--l~v~ 91 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTI-LKSRP--LRIR 91 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCE-ETTEE--CEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcE-ECCce--eEee
Confidence 34679999999999999999999999999999999654 7999999999999999999999987 67665 7887
Q ss_pred eCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCC
Q 014217 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (428)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
++.+
T Consensus 92 ~a~~---------------------------------------------------------------------------- 95 (261)
T 3sde_A 92 FATH---------------------------------------------------------------------------- 95 (261)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred eccc----------------------------------------------------------------------------
Confidence 7632
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (428)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
T Consensus 96 -------------------------------------------------------------------------------- 95 (261)
T 3sde_A 96 -------------------------------------------------------------------------------- 95 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-cCceeC---CeEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLG---GKKLK 415 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l-~g~~l~---g~~i~ 415 (428)
.++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..| +|..+. |++|.
T Consensus 96 --~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 96 --GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp --SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred --CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 2789999999999999999999999999999999995 9999999999999999999999999 555555 99999
Q ss_pred EEEecCCcC
Q 014217 416 VQLKRDNKQ 424 (428)
Q Consensus 416 v~~a~~~~~ 424 (428)
|+++.....
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 999987653
No 27
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=6.4e-28 Score=213.41 Aligned_cols=194 Identities=21% Similarity=0.364 Sum_probs=143.6
Q ss_pred cccceEEEecCCC-CCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEE
Q 014217 100 RLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (428)
Q Consensus 100 ~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (428)
...++|||+|||. ++++++|+++|+.||.|..+.+..+. +|||||+|.+.++|.+|++.|++.. +.|+. |.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g~~--l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGKP--IRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCB-CSSSB--CEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCe-ECCeE--EEE
Confidence 3468999999999 99999999999999999999999875 7899999999999999999999977 67765 888
Q ss_pred EeCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCC
Q 014217 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (428)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (428)
.++...... .+....... ...
T Consensus 105 ~~a~~~~~~--------------~~~~~~~~~------------------------~~~--------------------- 125 (229)
T 2adc_A 105 TLSKHQNVQ--------------LPREGQEDQ------------------------GLT--------------------- 125 (229)
T ss_dssp ECCSCCCCC--------------CCCSSSSTT------------------------TTE---------------------
T ss_pred EEecCcccc--------------Ccccccccc------------------------ccc---------------------
Confidence 887543100 000000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (428)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (428)
.. +..... ..+.. +........
T Consensus 126 -------------------~~-------~~~~~~--------------~~~~~------------------~~~~~~~~~ 147 (229)
T 2adc_A 126 -------------------KD-------YGNSPL--------------HRFKK------------------PGSKNFQNI 147 (229)
T ss_dssp -------------------EE-------CTTCSS--------------CCCCS------------------TTSGGGTTC
T ss_pred -------------------cc-------cccCcc--------------cccCC------------------ccccccccC
Confidence 00 000000 00000 000000012
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~-g~~i~v 416 (428)
..+.++|||+|||.++++++|+++|+.|| .|.+|+|+.+ .+|+|||+|.+.++|.+|+..|||..++ |+.|+|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 33569999999999999999999999999 9999999653 2589999999999999999999999999 999999
Q ss_pred EEecCC
Q 014217 417 QLKRDN 422 (428)
Q Consensus 417 ~~a~~~ 422 (428)
+|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999875
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.7e-28 Score=207.49 Aligned_cols=158 Identities=27% Similarity=0.443 Sum_probs=137.2
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
.+.++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .+|+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 367999999999999999999999999 6 67766654 34689999999999999999 888865
Q ss_pred CCCCCCCcceeeccCcccc-cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHH
Q 014217 81 TLPGASSPLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~ 158 (428)
+.| +.+.+.++..... ...++|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 -FQG--QSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp -ETT--EECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred -ecC--ceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 444 7888888765433 336899999999999999999999999999999999886 88999999999999999999
Q ss_pred HHHHHcCCccCCCCcceEEEEeCC
Q 014217 159 ALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
|++.|+|.. ++|+. |.|.+|.
T Consensus 152 A~~~l~g~~-~~g~~--l~V~~As 172 (172)
T 2g4b_A 152 AIAGLNGMQ-LGDKK--LLVQRAS 172 (172)
T ss_dssp HHHHHTTCE-ETTEE--CEEEECC
T ss_pred HHHHcCCCE-ECCeE--EEEEeCC
Confidence 999999987 77775 8888773
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.9e-29 Score=214.04 Aligned_cols=165 Identities=21% Similarity=0.328 Sum_probs=141.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..++...++|||+|||+++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ ||+..+ .| +
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~-~g--~ 81 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-FG--N 81 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEE-TT--E
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEe-CC--e
Confidence 457788999999999999999999999999998766 344555578899999999999999999994 888754 34 8
Q ss_pred cceeeccCcccc---cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 014217 88 PLQVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (428)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~ 164 (428)
.+.+.++..... ...++|||+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|++.|+
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 82 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp EEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred EEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 888888764332 346899999999999999999999999998766 5677889999999999999999999999
Q ss_pred CCccCCCCcceEEEEeCCCH
Q 014217 165 GKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~ 184 (428)
|.. ++|+. |.|.|+.++
T Consensus 158 g~~-~~g~~--i~v~~a~~k 174 (175)
T 1fje_B 158 GAE-IDGRS--VSLYYTGEK 174 (175)
T ss_dssp EEE-ETTEE--EEEEECSSC
T ss_pred CCE-ECCeE--EEEEecCCC
Confidence 976 77765 899998653
No 30
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4.2e-28 Score=210.02 Aligned_cols=192 Identities=21% Similarity=0.367 Sum_probs=142.7
Q ss_pred cceEEEecCCC-CCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEe
Q 014217 102 EHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (428)
Q Consensus 102 ~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (428)
+++|||+|||. ++++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|.+|++.|++.. +.|+. |.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~--l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGKP--IRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCC-CSSCC--CEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCe-ecCeE--EEEEE
Confidence 47899999999 99999999999999999999998874 7899999999999999999999977 67765 78888
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCCC
Q 014217 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (428)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (428)
+...... .+...... ......
T Consensus 76 a~~~~~~--------------~~~~~~~~------------------------~~~~~~--------------------- 96 (198)
T 1qm9_A 76 SKHQNVQ--------------LPREGQED------------------------QGLTKD--------------------- 96 (198)
T ss_dssp CCCCSCC--------------CSSSSSSS------------------------SSCEEE---------------------
T ss_pred ecCCCcC--------------CCCcCCcc------------------------cccccc---------------------
Confidence 7653100 00000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGP 340 (428)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (428)
+.+... ..+.. +..........
T Consensus 97 --------------------------~~~~~~--------------~r~~~------------------~~~~~~~~~~~ 118 (198)
T 1qm9_A 97 --------------------------YGNSPL--------------HRFKK------------------PGSKNFQNIFP 118 (198)
T ss_dssp --------------------------SSCCCT--------------TSSSS------------------CCCCCCSCCCC
T ss_pred --------------------------ccCCch--------------hhccC------------------ccccccccCCC
Confidence 000000 00000 00000001123
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~-g~~i~v~~ 418 (428)
+.++|||+|||..+++++|+++|+.|| .|.+|+|+.+. +|+|||+|.+.++|.+|+..|||..++ |+.|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 569999999999999999999999999 99999996542 689999999999999999999999999 99999999
Q ss_pred ecCC
Q 014217 419 KRDN 422 (428)
Q Consensus 419 a~~~ 422 (428)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=5.5e-28 Score=218.10 Aligned_cols=164 Identities=25% Similarity=0.405 Sum_probs=143.6
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
........++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+ .|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i-~g-- 85 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL-KS-- 85 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE-CC--
Confidence 3455677889999999999999999999999999999998654 57999999999999999999988754 44
Q ss_pred CcceeeccCcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHc-C
Q 014217 87 SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN-G 165 (428)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~-~ 165 (428)
+.+.+.++.. .++|||+|||..+++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|+..|+ +
T Consensus 86 ~~l~v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 86 RPLRIRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp EECEEEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred ceeEeeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 8888888764 478999999999999999999999999999999998899999999999999999999999994 4
Q ss_pred CccCCCCcceEEEEeCCCH
Q 014217 166 KHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (428)
..++.+...++.|.++...
T Consensus 161 ~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CEESSSSCCBCEEEECCCE
T ss_pred eEEecCCCceEEEeecccc
Confidence 4444455567899988654
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.9e-27 Score=210.35 Aligned_cols=161 Identities=20% Similarity=0.348 Sum_probs=138.3
Q ss_pred ccccccCceEEEeCCCC-CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.....++++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..+ .|
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~-~g-- 99 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HG-- 99 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC-SS--
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE-CC--
Confidence 34456789999999999 99999999999999999999999876 57999999999999999999998754 44
Q ss_pred CcceeeccCccc------------------------------------ccccceEEEecCCCCCCHHHHHHhccccC-Ce
Q 014217 87 SPLQVKYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TI 129 (428)
Q Consensus 87 ~~~~~~~~~~~~------------------------------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v 129 (428)
+.|.+.++.... ....++|||+|||..+++++|+++|+.|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 778887764320 01147899999999999999999999999 99
Q ss_pred EEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCC-CCcceEEEEeCCC
Q 014217 130 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (428)
Q Consensus 130 ~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~-g~~~~l~v~~a~~ 183 (428)
..+.+... ++|+|||+|.+.++|.+|++.|+|.. +. |+. |.|.|+.+
T Consensus 180 ~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~~--l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENHH--LRVSFSKS 227 (229)
T ss_dssp EEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCB-SSSSCB--CEEEECSS
T ss_pred eEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCc-cCCCCe--EEEEEecC
Confidence 99999654 37899999999999999999999987 55 665 88988865
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=3.4e-29 Score=216.92 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=135.8
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
..+++|||+|||+++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 4 4555554 456789999999999999999 788765
Q ss_pred CCCCCCCcceeeccCcccc---------------------cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-
Q 014217 81 TLPGASSPLQVKYADGELE---------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS- 138 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~- 138 (428)
+.| +.+.+.++..... ...++|||+|||..+++++|+++|+.||.|..+.+..+.
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 -FQG--QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp -ETT--EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred -EcC--ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 444 7888887654311 235899999999999999999999999999999999886
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 139 QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 139 ~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
+|.++|+|||+|.+.++|.+|++.|++.. ++|+. |.|.++.+.
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~--l~v~~a~~~ 194 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGDKK--LLVQRASVG 194 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCE-ETTEE--CEEEESCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCE-ECCEE--EEEEECCCC
Confidence 88899999999999999999999999987 77775 888888654
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=6.1e-28 Score=222.05 Aligned_cols=160 Identities=18% Similarity=0.310 Sum_probs=136.9
Q ss_pred cccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEE
Q 014217 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (428)
Q Consensus 100 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (428)
...++|||+|||.++++++|+++|+.||.|..|.+..+..+ ++|+|||+|.+.++|.+|++ +++.. +.|+. |.|.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~-~~g~~--i~v~ 113 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKV-VGQNE--IIVS 113 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCE-ETTEE--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcE-eCCcE--EEEE
Confidence 34689999999999999999999999999999999988765 48999999999999999995 88876 77765 6666
Q ss_pred eCCCHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccCCCCC
Q 014217 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (428)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (428)
++
T Consensus 114 ~~------------------------------------------------------------------------------ 115 (292)
T 2ghp_A 114 HL------------------------------------------------------------------------------ 115 (292)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred EC------------------------------------------------------------------------------
Confidence 54
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014217 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (428)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (428)
T Consensus 116 -------------------------------------------------------------------------------- 115 (292)
T 2ghp_A 116 -------------------------------------------------------------------------------- 115 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..++|||+|||.++++++|+++|+.|| .|.+|+|+.++ .|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 116 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 -TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp -CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 238999999999999999999999999 99999999987 588999999999999999999999999999999999999
Q ss_pred ecCCcC
Q 014217 419 KRDNKQ 424 (428)
Q Consensus 419 a~~~~~ 424 (428)
+..+..
T Consensus 194 a~~~~~ 199 (292)
T 2ghp_A 194 SNPLEK 199 (292)
T ss_dssp CCCC--
T ss_pred CCCCcc
Confidence 987654
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.7e-27 Score=217.87 Aligned_cols=161 Identities=21% Similarity=0.429 Sum_probs=138.3
Q ss_pred ccccCceEEEeCCCCCCCHHHHH----HHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
+....++|||+|||+++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.||+..+ .|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g- 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD- 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee-CC-
Confidence 45678999999999999999977 8999999999999886 578999999999999999999999998754 44
Q ss_pred CCcceeeccCcccc------------------------------------------------------------------
Q 014217 86 SSPLQVKYADGELE------------------------------------------------------------------ 99 (428)
Q Consensus 86 ~~~~~~~~~~~~~~------------------------------------------------------------------ 99 (428)
+.|++.|+.....
T Consensus 80 -~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 80 -KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred -cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 7777777643221
Q ss_pred ----------------------------------------------cccceEEEecCCCCCCHHHHHHhccccCCeEEEE
Q 014217 100 ----------------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133 (428)
Q Consensus 100 ----------------------------------------------~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 133 (428)
...++|||+|||..+++++|+++|+.||.|..+.
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 1246799999999999999999999999999999
Q ss_pred EccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCC
Q 014217 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (428)
Q Consensus 134 i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (428)
+..+. +|+|||+|.+.++|.+|++.|+|..+..|+. |.|.|++
T Consensus 239 ~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~--l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNA--MKISFAK 281 (282)
T ss_pred EecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE--EEEEEec
Confidence 98653 5899999999999999999999987332664 8898875
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.7e-27 Score=204.91 Aligned_cols=156 Identities=21% Similarity=0.362 Sum_probs=134.5
Q ss_pred cCceEEEeCCCC-CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 13 ERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 13 ~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
++++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.||+..+ .| +.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HG--KPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC-SS--CCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee-cC--eEEEE
Confidence 468999999999 99999999999999999999998875 57999999999999999999998764 44 77777
Q ss_pred eccCccc------------------------------------ccccceEEEecCCCCCCHHHHHHhccccC-CeEEEEE
Q 014217 92 KYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQI 134 (428)
Q Consensus 92 ~~~~~~~------------------------------------~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i 134 (428)
.++.... ....++|||+|||..+++++|+++|+.|| .|..+.+
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred EEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 7664321 01257899999999999999999999999 9999999
Q ss_pred ccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCC-CCcceEEEEeCCC
Q 014217 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (428)
Q Consensus 135 ~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~-g~~~~l~v~~a~~ 183 (428)
..+ .+|+|||+|.+.++|.+|++.|+|.. +. |+. |.|.|+.+
T Consensus 154 ~~~----~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~--l~v~~a~~ 196 (198)
T 1qm9_A 154 FQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENHH--LRVSFSKS 196 (198)
T ss_dssp SST----TSSCEEEECSSHHHHHHHHHHHTSSC-CSSCCS--CCEEEECC
T ss_pred EeC----CCcEEEEEeCCHHHHHHHHHHhcCCc-cCCCCe--EEEEeecc
Confidence 764 27899999999999999999999987 55 665 78888764
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=1.7e-23 Score=173.97 Aligned_cols=87 Identities=25% Similarity=0.418 Sum_probs=82.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|++++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 014217 421 DNKQNKP 427 (428)
Q Consensus 421 ~~~~~~~ 427 (428)
.+..+.+
T Consensus 149 ~~~~~~~ 155 (158)
T 2kn4_A 149 YGRPPDS 155 (158)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 8866554
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=8.1e-23 Score=154.76 Aligned_cols=81 Identities=38% Similarity=0.612 Sum_probs=78.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.+++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred C
Q 014217 421 D 421 (428)
Q Consensus 421 ~ 421 (428)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=151.40 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=80.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35699999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 014217 420 RDNKQ 424 (428)
Q Consensus 420 ~~~~~ 424 (428)
+.+..
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 87653
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=7.2e-21 Score=148.92 Aligned_cols=90 Identities=66% Similarity=1.071 Sum_probs=84.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
|++.+..++|
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpz_A 101 LKRSKNDSKS 110 (115)
T ss_dssp CCCCSCCCCC
T ss_pred EcCCCCcCCC
Confidence 9999887765
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=148.50 Aligned_cols=83 Identities=16% Similarity=0.336 Sum_probs=77.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEEEEEec
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQLKR 420 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l-~g~~l~g~~i~v~~a~ 420 (428)
.+|||+|||+++|+++|+++|+.|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.+ |+..++|++|+|+||+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 7899999999999999999999999 8999999999989999999999999999999999987 5667999999999999
Q ss_pred CCcCC
Q 014217 421 DNKQN 425 (428)
Q Consensus 421 ~~~~~ 425 (428)
+++..
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.5e-21 Score=145.41 Aligned_cols=90 Identities=24% Similarity=0.402 Sum_probs=85.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
+++.+..+.|
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9999887765
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=146.56 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=77.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCC--eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc----eeCCeEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGGKKL 414 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~----~l~g~~i 414 (428)
.-.||||+|||+++|+++|+++|++||. +.+|+|++|+.+|+++|||||+|.+.++|.+|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4589999999999999999999999995 679999999999999999999999999999999999997 4899999
Q ss_pred EEEEecCC
Q 014217 415 KVQLKRDN 422 (428)
Q Consensus 415 ~v~~a~~~ 422 (428)
.|+||++.
T Consensus 88 ~V~~Akss 95 (95)
T 2lkz_A 88 GVDFAKSA 95 (95)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999873
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=141.12 Aligned_cols=83 Identities=34% Similarity=0.548 Sum_probs=77.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
.++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 864
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.1e-20 Score=145.46 Aligned_cols=90 Identities=27% Similarity=0.402 Sum_probs=84.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC---eEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG---KKL 414 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g---~~i 414 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567999999999999999999999999999999999997 89999999999999999999999999999988 999
Q ss_pred EEEEecCCcCCCCC
Q 014217 415 KVQLKRDNKQNKPY 428 (428)
Q Consensus 415 ~v~~a~~~~~~~~~ 428 (428)
+|.|++.++.+.|+
T Consensus 90 ~V~~a~~~~~~~~~ 103 (105)
T 2dnh_A 90 VVKFADTDKESGPS 103 (105)
T ss_dssp EEEESCSSCCCSCS
T ss_pred EEEECccCcccCCC
Confidence 99999999988774
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=9e-21 Score=139.18 Aligned_cols=82 Identities=37% Similarity=0.572 Sum_probs=79.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..++|++|+|++++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 78999999999999999999999999999999999889999999999999999999999999999999999999999987
Q ss_pred cC
Q 014217 423 KQ 424 (428)
Q Consensus 423 ~~ 424 (428)
++
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=142.58 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=81.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
++.++.+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9998765
No 48
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.1e-20 Score=146.34 Aligned_cols=89 Identities=31% Similarity=0.511 Sum_probs=83.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
|++.+....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999887653
No 49
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=4.4e-21 Score=157.66 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=74.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|..|+..|||..|+|++|+|+|++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5699999999999999999999999999999999876 47999999999999999999999999999999999998
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
.++
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=141.25 Aligned_cols=84 Identities=21% Similarity=0.418 Sum_probs=80.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecC
Q 014217 418 LKRD 421 (428)
Q Consensus 418 ~a~~ 421 (428)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9985
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=9.7e-21 Score=139.67 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=78.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..++|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 014217 419 KR 420 (428)
Q Consensus 419 a~ 420 (428)
||
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=143.18 Aligned_cols=89 Identities=26% Similarity=0.490 Sum_probs=83.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++ |||..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999999 99999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
+++.+..+.+
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2dgs_A 85 RAEPRDSKSS 94 (99)
T ss_dssp ECCCCCCCCC
T ss_pred ECCCCcccCC
Confidence 9998877654
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=143.19 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=83.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.++...
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99987653
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=142.18 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=83.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
++++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..|+|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 014217 421 DNKQNKP 427 (428)
Q Consensus 421 ~~~~~~~ 427 (428)
.+..+.+
T Consensus 84 ~~~~~~~ 90 (95)
T 2dnz_A 84 ERLDGGS 90 (95)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9887654
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.6e-20 Score=146.64 Aligned_cols=82 Identities=35% Similarity=0.588 Sum_probs=76.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecC
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 421 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~ 421 (428)
.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|.+|++.|||..|+|++|+|.+++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4789999999999999999999999999999999985 55899999999999999999999999999999999999988
Q ss_pred CcCC
Q 014217 422 NKQN 425 (428)
Q Consensus 422 ~~~~ 425 (428)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 7654
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.7e-21 Score=149.65 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=71.2
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
....+|||+|||+++|+++|+++|+.||.|.+|+++++. ++++|||||+|.+.++|++||+.||+.. +.| +.|.+
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V 77 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFV 77 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEE
Confidence 356789999999999999999999999999999999986 4589999999999999999999999875 444 78888
Q ss_pred eccCcccccc---------cceEEEecCCCCCCHHH
Q 014217 92 KYADGELERL---------EHKLFIGMLPKNVSEAE 118 (428)
Q Consensus 92 ~~~~~~~~~~---------~~~v~v~nlp~~~t~~~ 118 (428)
.++....... .++|||+|||+++|++-
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 78 GRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EESSCCCC----------------------------
T ss_pred EECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 8775433221 35799999999998863
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=141.07 Aligned_cols=83 Identities=25% Similarity=0.447 Sum_probs=79.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34467999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
|||
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=144.43 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=84.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+++.+..+.
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 999887654
No 59
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.3e-21 Score=144.51 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=73.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.+|||+|||.++++++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999899999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 014217 421 DNKQNKP 427 (428)
Q Consensus 421 ~~~~~~~ 427 (428)
.++...|
T Consensus 82 ~~~~~~~ 88 (90)
T 3p5t_L 82 KLEHHHH 88 (90)
T ss_dssp -------
T ss_pred CCccccC
Confidence 9887665
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.9e-21 Score=144.80 Aligned_cols=89 Identities=26% Similarity=0.420 Sum_probs=84.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 014217 419 KRDNKQNKP 427 (428)
Q Consensus 419 a~~~~~~~~ 427 (428)
++.+..+.+
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 999877654
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=7.9e-21 Score=143.51 Aligned_cols=86 Identities=24% Similarity=0.453 Sum_probs=81.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcCCC
Q 014217 421 DNKQNK 426 (428)
Q Consensus 421 ~~~~~~ 426 (428)
.+....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 887543
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=4.6e-20 Score=145.06 Aligned_cols=83 Identities=64% Similarity=1.088 Sum_probs=78.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
|+|
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 986
No 63
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=143.88 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=83.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..++
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99887665
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=141.61 Aligned_cols=87 Identities=34% Similarity=0.566 Sum_probs=81.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446799999999999999999999999999999999988 799999999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 014217 419 KRDNKQNKP 427 (428)
Q Consensus 419 a~~~~~~~~ 427 (428)
++.+..+.+
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 999887654
No 65
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=6.3e-20 Score=140.48 Aligned_cols=86 Identities=23% Similarity=0.435 Sum_probs=80.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.|| |.+|+|+.++.+++++|||||+|.+.++|.+|+ .|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34679999999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..++
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99887654
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=143.39 Aligned_cols=86 Identities=24% Similarity=0.389 Sum_probs=81.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34569999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q 014217 419 KRDNKQ 424 (428)
Q Consensus 419 a~~~~~ 424 (428)
++.++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 998764
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=144.09 Aligned_cols=88 Identities=25% Similarity=0.387 Sum_probs=82.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 99876554
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=141.20 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=81.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCC---CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|..++. ++.++|||||+|.+.++|.+|+..|||..|+|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 569999999999999999999999999999999998876 56899999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
+++.+....+
T Consensus 84 ~a~~~~~~~~ 93 (98)
T 2cpf_A 84 ISERATKPAS 93 (98)
T ss_dssp CSSCSSCCCC
T ss_pred EccCCCCCCC
Confidence 9998876543
No 69
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=143.63 Aligned_cols=89 Identities=26% Similarity=0.440 Sum_probs=83.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc------CceeCC
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN------GCQLGG 411 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~------g~~l~g 411 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|| |..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34467999999999999999999999999999999999998899999999999999999999999999 999999
Q ss_pred eEEEEEEecCCcCCC
Q 014217 412 KKLKVQLKRDNKQNK 426 (428)
Q Consensus 412 ~~i~v~~a~~~~~~~ 426 (428)
+.|+|++++.+....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999887654
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.6e-20 Score=144.53 Aligned_cols=88 Identities=25% Similarity=0.420 Sum_probs=82.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..++
T Consensus 103 a~~~~~~r 110 (110)
T 1oo0_B 103 CFVKGPKR 110 (110)
T ss_dssp SEESSCC-
T ss_pred cccCCCCC
Confidence 99887653
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-19 Score=145.86 Aligned_cols=90 Identities=33% Similarity=0.492 Sum_probs=84.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
+++.+..++.
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9999887654
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=142.50 Aligned_cols=85 Identities=26% Similarity=0.524 Sum_probs=81.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||..+++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34669999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014217 419 KRDNK 423 (428)
Q Consensus 419 a~~~~ 423 (428)
++.+.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98874
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=141.79 Aligned_cols=87 Identities=28% Similarity=0.459 Sum_probs=82.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEE-EEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+.++|||+|||.++++++|+++|+.||.|.+| +|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56999999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 014217 420 RDNKQNKP 427 (428)
Q Consensus 420 ~~~~~~~~ 427 (428)
+.+..+.+
T Consensus 84 ~~~~~~~~ 91 (96)
T 1x5t_A 84 FKKDSKGS 91 (96)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98876653
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=140.15 Aligned_cols=82 Identities=22% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEE--------EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
..+.++|||+|||.++++++|+++|+.||.|.+ |+|+.++.+|+++|||||+|.+.++|.+|++.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346699999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEec
Q 014217 411 GKKLKVQLKR 420 (428)
Q Consensus 411 g~~i~v~~a~ 420 (428)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=142.71 Aligned_cols=89 Identities=19% Similarity=0.420 Sum_probs=83.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEee-CCCCCeeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD-KATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLK 415 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~F~~~e~A~~A~~~l-~g~~l~g~~i~ 415 (428)
...+.++|||+|||..+++++|+++|+.||.|.+|+|+.+ +.++.++|||||+|.+.++|.+|+..| ||..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456799999999999999999999999999999999998 779999999999999999999999999 99999999999
Q ss_pred EEEecCCcCCC
Q 014217 416 VQLKRDNKQNK 426 (428)
Q Consensus 416 v~~a~~~~~~~ 426 (428)
|+|++.+....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999887653
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.3e-20 Score=139.57 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=80.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|.+|+..|||..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 44567999999999999999999999999999999999885 3368999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
|++.+..+++
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cqi_A 89 WATTPSSQKS 98 (103)
T ss_dssp ECCCTTCCCC
T ss_pred ECCCCccccc
Confidence 9999876653
No 77
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=140.25 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=80.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
....++|||+|||.++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34569999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014217 419 KRDNK 423 (428)
Q Consensus 419 a~~~~ 423 (428)
++.+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98764
No 78
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=6.3e-21 Score=144.96 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=79.2
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC-eE
Q 014217 341 PGANLFIYHIPQ------EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KK 413 (428)
Q Consensus 341 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g-~~ 413 (428)
..++|||+|||. ++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|+..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999889999999999999999999999999999999 99
Q ss_pred EEEEEecCCc
Q 014217 414 LKVQLKRDNK 423 (428)
Q Consensus 414 i~v~~a~~~~ 423 (428)
|+|.+++++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997653
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=138.54 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|+|++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4467999999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ecC
Q 014217 419 KRD 421 (428)
Q Consensus 419 a~~ 421 (428)
+++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 80
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=2.5e-20 Score=148.31 Aligned_cols=88 Identities=20% Similarity=0.436 Sum_probs=82.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..|+|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCC
Q 014217 418 LKRDNKQN 425 (428)
Q Consensus 418 ~a~~~~~~ 425 (428)
|++.++.+
T Consensus 122 ~a~~~~p~ 129 (129)
T 2kxn_B 122 FSITKRPH 129 (129)
T ss_dssp CCSSSSCC
T ss_pred EecCCCCC
Confidence 99987753
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=3.4e-20 Score=153.86 Aligned_cols=137 Identities=20% Similarity=0.293 Sum_probs=106.8
Q ss_pred EEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC----Ccceeecc-------CcccccccceEEEecCC
Q 014217 43 EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS----SPLQVKYA-------DGELERLEHKLFIGMLP 111 (428)
Q Consensus 43 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~v~v~nlp 111 (428)
.++++.+. .+++|||||+|.+.++|++|++.+++.....+.. ........ .........+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 36677775 3689999999999999999999887533222200 11111100 11112236899999999
Q ss_pred CCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 112 KNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 112 ~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
.++++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|.+|++.|++.. +.|+. |.|.++...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~--l~v~~a~~~ 150 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGRE--LRVQMARYG 150 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSSSE--EEEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCeE--EEEEECCCC
Confidence 999999999999999999999999886 78999999999999999999999999976 77775 888888654
No 82
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=142.76 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=81.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..||+ .|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345679999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+++.+...+
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 997765443
No 83
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=140.05 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=80.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467999999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865444
No 84
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=139.63 Aligned_cols=86 Identities=24% Similarity=0.419 Sum_probs=76.3
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
+.-.-..++|||+|||+++|+++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 13 en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g--r 89 (99)
T 4fxv_A 13 ENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL-QS--K 89 (99)
T ss_dssp ---CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE-CC--E
Confidence 33445678999999999999999999999999999999999999999999999999999999999999998764 44 8
Q ss_pred cceeeccCc
Q 014217 88 PLQVKYADG 96 (428)
Q Consensus 88 ~~~~~~~~~ 96 (428)
.|++.|+++
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 899998864
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.2e-20 Score=138.06 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=78.5
Q ss_pred CCceEEEeCCCCCCCHHHHH----HHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 416 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v 416 (428)
..++|||+|||.++++++|+ ++|+.||.|.+|+|+.++.+ +|||||+|.+.++|.+|+..|||..|+|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56899999999999999999 99999999999999988744 899999999999999999999999999999999
Q ss_pred EEecCCcCCCC
Q 014217 417 QLKRDNKQNKP 427 (428)
Q Consensus 417 ~~a~~~~~~~~ 427 (428)
++|+.+..+.|
T Consensus 85 ~~a~~~~~~~~ 95 (96)
T 2dgx_A 85 SLATGASGPSS 95 (96)
T ss_dssp EECCCSSCCCC
T ss_pred EEcCCCCCCCC
Confidence 99998877654
No 86
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=136.88 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce--eCCeEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLK 415 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~--l~g~~i~ 415 (428)
..+++++|||+|||+++|+++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|+..|+|.. ++|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3457799999999999999999999999999999999754 4899999999999999999999986 7899999
Q ss_pred EEEecCCc
Q 014217 416 VQLKRDNK 423 (428)
Q Consensus 416 v~~a~~~~ 423 (428)
|+|++++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99999874
No 87
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=4.6e-20 Score=142.10 Aligned_cols=88 Identities=23% Similarity=0.417 Sum_probs=82.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee---CCeEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l---~g~~i~ 415 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44679999999999999999999999999999999999988899999999999999999999999999998 899999
Q ss_pred EEEecCCcCCC
Q 014217 416 VQLKRDNKQNK 426 (428)
Q Consensus 416 v~~a~~~~~~~ 426 (428)
|.+++.+..+.
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99999877654
No 88
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=142.93 Aligned_cols=88 Identities=27% Similarity=0.456 Sum_probs=82.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeE--------EEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVL--------SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
..+.++|||+|||.++++++|+++|+.||.|. .|+|+.++.+++++|||||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44679999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEecCCcCCC
Q 014217 411 GKKLKVQLKRDNKQNK 426 (428)
Q Consensus 411 g~~i~v~~a~~~~~~~ 426 (428)
|+.|+|++++.+..+.
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999887654
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=139.66 Aligned_cols=85 Identities=18% Similarity=0.405 Sum_probs=80.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
.+.++|||+|||.++++++|+++|+.|| |.+|+|+.++.+ ++++|||||+|.+.++|.+|+ .|||..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4569999999999999999999999999 999999999877 999999999999999999999 9999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..+.
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887653
No 90
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=137.40 Aligned_cols=87 Identities=28% Similarity=0.514 Sum_probs=80.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999998863 3899999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 014217 419 KRDNKQNKP 427 (428)
Q Consensus 419 a~~~~~~~~ 427 (428)
++.+....+
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 998876543
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=135.90 Aligned_cols=84 Identities=18% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCC-eeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV-SKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~-~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++.++. ++|||||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999886666 8999999999999999999999999999999999999
Q ss_pred cCCcC
Q 014217 420 RDNKQ 424 (428)
Q Consensus 420 ~~~~~ 424 (428)
+.+..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 92
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=139.31 Aligned_cols=86 Identities=21% Similarity=0.396 Sum_probs=81.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeE-EEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeE----
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVL-SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK---- 413 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~---- 413 (428)
..+.++|||+|||.++++++|+++|+.||.|. +|+|+.++.++.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34679999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEecCCcC
Q 014217 414 LKVQLKRDNKQ 424 (428)
Q Consensus 414 i~v~~a~~~~~ 424 (428)
|+|.||+....
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987654
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=141.10 Aligned_cols=88 Identities=20% Similarity=0.351 Sum_probs=82.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+.. ||..|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 455679999999999999999999999999999999999988999999999999999999999999 9999999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+++.+....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 999887654
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=4.9e-19 Score=140.40 Aligned_cols=89 Identities=25% Similarity=0.346 Sum_probs=83.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
....++|||+|||.++++++|+++|+.||.|.+|+|..++ +|+++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCcCCCCC
Q 014217 419 KRDNKQNKPY 428 (428)
Q Consensus 419 a~~~~~~~~~ 428 (428)
|.......|+
T Consensus 111 a~~~~~~~~~ 120 (124)
T 2kt5_A 111 VASQIDLEHH 120 (124)
T ss_dssp ECCTTCCCCC
T ss_pred eCCCCCCCCC
Confidence 9998877663
No 95
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=142.91 Aligned_cols=86 Identities=30% Similarity=0.466 Sum_probs=81.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3466999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
++.+...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9887654
No 96
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=7.1e-20 Score=141.39 Aligned_cols=88 Identities=24% Similarity=0.382 Sum_probs=79.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+..+ +..|+|+.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3446799999999999999999999999999999999999888999999999999999999999986 599999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+++.+..++
T Consensus 100 ~a~~~~~~~ 108 (109)
T 2rs2_A 100 VAFPRRAQP 108 (109)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999888765
No 97
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.4e-19 Score=134.67 Aligned_cols=82 Identities=21% Similarity=0.439 Sum_probs=78.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3489999999999999999999999999999999999889999999999999999999999 999999999999999998
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=137.50 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=72.8
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc--eeCCeEEE
Q 014217 339 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~--~l~g~~i~ 415 (428)
..+.++|||+|||+ ++++++|+++|+.||.|.+|+|++++ |||||+|.+.++|..|++.||+. .|.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44779999999999 99999999999999999999998764 89999999999999999999875 49999999
Q ss_pred EEEecCCcC
Q 014217 416 VQLKRDNKQ 424 (428)
Q Consensus 416 v~~a~~~~~ 424 (428)
|.||+.++.
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999996553
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-20 Score=138.32 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g--~~l~g~~i~v 416 (428)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|++.|++ ..|+|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346799999999999999999999999999999999865 59999999999999999998864 7899999999
Q ss_pred EEecCCcCCC
Q 014217 417 QLKRDNKQNK 426 (428)
Q Consensus 417 ~~a~~~~~~~ 426 (428)
+||+.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9999886543
No 100
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=133.03 Aligned_cols=84 Identities=13% Similarity=0.290 Sum_probs=79.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
....++|||+|||.++++++|+++|+.| .|.+|+|+.+ .+|+++|||||+|.+.++|.+|+. |||..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3466999999999999999999999999 9999999999 699999999999999999999999 999999999999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
++.++..
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9988654
No 101
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=3e-19 Score=137.79 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=77.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||..+++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 467999999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred cC
Q 014217 420 RD 421 (428)
Q Consensus 420 ~~ 421 (428)
.+
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 102
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-19 Score=135.09 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=79.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+. ++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999 4779999999999
Q ss_pred EecCCcCC
Q 014217 418 LKRDNKQN 425 (428)
Q Consensus 418 ~a~~~~~~ 425 (428)
+++.+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99987654
No 103
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=3.6e-19 Score=147.24 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=83.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 014217 420 RDNKQNKP 427 (428)
Q Consensus 420 ~~~~~~~~ 427 (428)
+.+..++.
T Consensus 117 ~~~~~~~~ 124 (156)
T 1h2v_Z 117 AGFKEGRQ 124 (156)
T ss_dssp SCCCTTCC
T ss_pred CCCCCcCC
Confidence 98776654
No 104
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.9e-19 Score=134.84 Aligned_cols=85 Identities=32% Similarity=0.575 Sum_probs=79.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++++++|+++|+.||.|.+|+|..+ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36699999999999999999999999999999999874 7899999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 014217 420 RDNKQNK 426 (428)
Q Consensus 420 ~~~~~~~ 426 (428)
+.+..+.
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 9887653
No 105
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=139.31 Aligned_cols=87 Identities=25% Similarity=0.434 Sum_probs=81.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhc-CCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce-eCCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQA-FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ-LGGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~-l~g~~i~v 416 (428)
..+.++|||+|||.++++++|+++|+. ||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+..|||.. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 346699999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEecCCcCCC
Q 014217 417 QLKRDNKQNK 426 (428)
Q Consensus 417 ~~a~~~~~~~ 426 (428)
++++.+..+.
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998776654
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=6.8e-20 Score=138.18 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
++.++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.|||..|+|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35699999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cC
Q 014217 420 RD 421 (428)
Q Consensus 420 ~~ 421 (428)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 107
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=148.69 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=77.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...++|||+|||+++++++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 014217 418 LKRDN 422 (428)
Q Consensus 418 ~a~~~ 422 (428)
+++.+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.2e-19 Score=144.41 Aligned_cols=88 Identities=25% Similarity=0.389 Sum_probs=83.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..++
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 99877654
No 109
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-19 Score=136.42 Aligned_cols=87 Identities=18% Similarity=0.451 Sum_probs=78.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3446799999999999999999999999999999999544 5589999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
|++.+..+.+
T Consensus 95 ~a~~~~~~~~ 104 (109)
T 1x4a_A 95 FPRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCCC
T ss_pred EcccCCCCCC
Confidence 9998876543
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.8e-19 Score=131.65 Aligned_cols=80 Identities=21% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 44679999999999999999999999999999999999988999999999999999999999965 88899999999998
Q ss_pred e
Q 014217 419 K 419 (428)
Q Consensus 419 a 419 (428)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=136.64 Aligned_cols=83 Identities=13% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce--eCCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~--l~g~~i~v 416 (428)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++.. ++|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346799999999999999999999999999999998764 5899999999999999999997654 89999999
Q ss_pred EEecCCcCCCC
Q 014217 417 QLKRDNKQNKP 427 (428)
Q Consensus 417 ~~a~~~~~~~~ 427 (428)
+|++.+...+|
T Consensus 86 ~~a~~~~~~~~ 96 (104)
T 1wex_A 86 NYSTSKRITRP 96 (104)
T ss_dssp EECSSSSCCCS
T ss_pred EEccCccccCC
Confidence 99998876654
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.7e-19 Score=129.06 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
....|+|+||++.+|+++|+++|++||+|.++++.. ++|||||+|.+.++|.+|++.|||..|+|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 458999999999999999999999999999999965 46999999999999999999999999999999999994
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=139.92 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=78.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
.....++|||+|||.++++++|+++|+.||.|.+|+|..++ +.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred EecCCc
Q 014217 418 LKRDNK 423 (428)
Q Consensus 418 ~a~~~~ 423 (428)
+++.+.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-20 Score=141.01 Aligned_cols=85 Identities=28% Similarity=0.524 Sum_probs=80.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 014217 420 RDNKQ 424 (428)
Q Consensus 420 ~~~~~ 424 (428)
+.+..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 98764
No 115
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=141.22 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=81.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3469999999999999999999999999999999999988999999999999999999999998 999999999999999
Q ss_pred cCCcCCC
Q 014217 420 RDNKQNK 426 (428)
Q Consensus 420 ~~~~~~~ 426 (428)
+.+....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 9887654
No 116
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-20 Score=144.11 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999999888999999999999999999999 99999999999999999
Q ss_pred cCCcC
Q 014217 420 RDNKQ 424 (428)
Q Consensus 420 ~~~~~ 424 (428)
+.+..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 117
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-20 Score=147.49 Aligned_cols=87 Identities=15% Similarity=0.346 Sum_probs=81.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEE--EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc----eeCC
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGG 411 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~----~l~g 411 (428)
...+.++|||+|||+++|+++|+++|+.||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456799999999999999999999999999977 99999998999999999999999 999999999999 9999
Q ss_pred eEEEEEEecCCcCC
Q 014217 412 KKLKVQLKRDNKQN 425 (428)
Q Consensus 412 ~~i~v~~a~~~~~~ 425 (428)
+.|+|++++.+..+
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999887543
No 118
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.1e-19 Score=132.52 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=73.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc--CceeCCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--g~~l~g~~i~v 416 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|.|+++ +|||||+|.+.++|..|+..|+ +..++|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 446799999999999999999999999999999998765 5999999999999999999875 67899999999
Q ss_pred EEecCCcCC
Q 014217 417 QLKRDNKQN 425 (428)
Q Consensus 417 ~~a~~~~~~ 425 (428)
.|++.+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999987654
No 119
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=137.76 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=75.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.++. |.++|||||+|.+.++|.+|+. ++|..|+|+.|+|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3569999999999999999999999999999999999985 9999999999999999999999 8999999999999987
Q ss_pred cC
Q 014217 420 RD 421 (428)
Q Consensus 420 ~~ 421 (428)
+.
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-20 Score=136.11 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..++|+.|++++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56999999999999999999999999999999999998899999999999999999999999999999999999988766
Q ss_pred C
Q 014217 421 D 421 (428)
Q Consensus 421 ~ 421 (428)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-20 Score=139.69 Aligned_cols=83 Identities=17% Similarity=0.392 Sum_probs=76.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
....++|||+|||.++++++|+++|+.|| |.+|+|+.++ .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34569999999999999999999999999 9999999997 58999999999999999999999 899999999999999
Q ss_pred EecCCc
Q 014217 418 LKRDNK 423 (428)
Q Consensus 418 ~a~~~~ 423 (428)
+++.+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998875
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=137.72 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=78.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHhhcCCCeEEEEEEeeCCCC---CeeeEEEEEecCHHHHHHHHHHhcCceeCCe
Q 014217 339 GPPGANLFIYHIPQEFGDQELG---NAFQAFGRVLSAKVFVDKATG---VSKCFGFVSYESPASAQNAIAMMNGCQLGGK 412 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~ 412 (428)
....++|||+|||.++++++|+ ++|+.||.|.+|+|+.++.++ +++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456899999999999999999 999999999999999887543 5679999999999999999999999999999
Q ss_pred EEEEEEecCCcC
Q 014217 413 KLKVQLKRDNKQ 424 (428)
Q Consensus 413 ~i~v~~a~~~~~ 424 (428)
+|+|+||+++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998874
No 123
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=133.87 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=77.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.| +|+.+ .+++++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34467999999999999999999999999977 56666 589999999999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
|++.+..+.
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2fc9_A 87 LQGPRGSPN 95 (101)
T ss_dssp ECSSCCCCC
T ss_pred EcCCCCCCC
Confidence 999887654
No 124
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-20 Score=137.48 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=75.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
+++|||+|||+++||++|+++|+.|| .|.+|++++|+.+++++|||||+|.+.++|++||+.+++...+.| +.|++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 57899999999999999999999999 899999999999999999999999999999999998866544555 899999
Q ss_pred ccCcccc
Q 014217 93 YADGELE 99 (428)
Q Consensus 93 ~~~~~~~ 99 (428)
++.+...
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 8876544
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=142.57 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=77.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|+|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ee
Q 014217 418 LK 419 (428)
Q Consensus 418 ~a 419 (428)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=140.23 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=74.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
..+.++|||+|||+.+++++|+ ++|+.||.|.+|.+. .+++++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4467999999999999999876 799999999998874 267899999999999999999999999999999999
Q ss_pred EEEEecCCc
Q 014217 415 KVQLKRDNK 423 (428)
Q Consensus 415 ~v~~a~~~~ 423 (428)
+|.||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999999765
No 127
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=4.1e-19 Score=139.14 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCC---eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+|+. |||..|+||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345699999999999999999999999999 89999999984 9999999999999999999999 999999999999
Q ss_pred EEEecCC
Q 014217 416 VQLKRDN 422 (428)
Q Consensus 416 v~~a~~~ 422 (428)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=132.49 Aligned_cols=85 Identities=25% Similarity=0.501 Sum_probs=78.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.| ..|+++.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4467999999999999999999999987 4788888888999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99987654
No 129
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=8.3e-19 Score=139.14 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=79.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCcCC
Q 014217 421 DNKQN 425 (428)
Q Consensus 421 ~~~~~ 425 (428)
.....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76654
No 130
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-19 Score=133.58 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=76.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
....++|||+|||+++|+++|+++|+.||. .+|+|+.++ +++++|||||+|.+.++|.+|++ +|+..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345699999999999999999999999995 599999998 99999999999999999999995 799999999999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
+......
T Consensus 89 ~~~~~~~ 95 (102)
T 1wez_A 89 NSTAGTS 95 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8876654
No 131
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=1.2e-18 Score=145.34 Aligned_cols=87 Identities=25% Similarity=0.423 Sum_probs=80.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 014217 420 RDNKQNK 426 (428)
Q Consensus 420 ~~~~~~~ 426 (428)
+.+..++
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred cCCCCCC
Confidence 8876543
No 132
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=133.86 Aligned_cols=83 Identities=28% Similarity=0.505 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee--------C
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--------G 410 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l--------~ 410 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3466999999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CeEEEEEEecCC
Q 014217 411 GKKLKVQLKRDN 422 (428)
Q Consensus 411 g~~i~v~~a~~~ 422 (428)
+++|+|+||+++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999854
No 133
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=136.46 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=74.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g--~~l~g~~i~v 416 (428)
..+.++|||+|||+++++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|+|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346799999999999999999999999999999999876 59999999999999999999984 6899999999
Q ss_pred EEecCCcCCC
Q 014217 417 QLKRDNKQNK 426 (428)
Q Consensus 417 ~~a~~~~~~~ 426 (428)
+||+.+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9999887654
No 134
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=5.3e-20 Score=137.24 Aligned_cols=84 Identities=23% Similarity=0.440 Sum_probs=74.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|++|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999999887
Q ss_pred cCCCC
Q 014217 423 KQNKP 427 (428)
Q Consensus 423 ~~~~~ 427 (428)
....+
T Consensus 81 ~~~~~ 85 (90)
T 2ki2_A 81 KSLEH 85 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 65543
No 135
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=137.45 Aligned_cols=85 Identities=25% Similarity=0.279 Sum_probs=79.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEE-eeCCCCCeeeEEEEEecCHHHHHHHHHHhc--CceeCCeEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVF-VDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 416 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--g~~l~g~~i~v 416 (428)
+.++|||+|||.++++++|+++|+.||. |.+|.|+ .++.+|.++|||||+|.+.++|..|+..|| +..++|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5699999999999999999999999998 9999998 787788999999999999999999999996 58999999999
Q ss_pred EEecCCcCC
Q 014217 417 QLKRDNKQN 425 (428)
Q Consensus 417 ~~a~~~~~~ 425 (428)
+||+.+...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987764
No 136
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9e-19 Score=130.44 Aligned_cols=81 Identities=27% Similarity=0.543 Sum_probs=75.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|+..|||..++|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467999999999999999999999999999999996 47999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 014217 419 KRDNKQNKP 427 (428)
Q Consensus 419 a~~~~~~~~ 427 (428)
++.+..+.+
T Consensus 77 a~~~~~~~~ 85 (90)
T 2dnq_A 77 SKNKSKASS 85 (90)
T ss_dssp SSCCCCCCS
T ss_pred CCCCCCCCC
Confidence 998876643
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=1.7e-19 Score=129.45 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=72.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 344 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 344 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++ |||..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999986
No 138
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=134.59 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=75.7
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCc--eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC---CCCC
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL--VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK---TLPG 84 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~---~~~~ 84 (428)
......+|||+|||+++|+++|+++|++||. +.+|++++|+.|++++|||||+|.+.++|.+|++.||+.. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567789999999999999999999999994 6789999999999999999999999999999999999864 2444
Q ss_pred CCCcceeeccCc
Q 014217 85 ASSPLQVKYADG 96 (428)
Q Consensus 85 ~~~~~~~~~~~~ 96 (428)
+.|.+.|++.
T Consensus 85 --r~i~V~~Aks 94 (95)
T 2lkz_A 85 --KTIGVDFAKS 94 (95)
T ss_dssp --EEEEEEECCC
T ss_pred --EEEEEEEccC
Confidence 8899888764
No 139
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.8e-19 Score=144.58 Aligned_cols=88 Identities=25% Similarity=0.398 Sum_probs=82.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|++|+|+|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..+.
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 99876654
No 140
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=138.67 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=78.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCe-EEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRV-LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..+.++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|.+|+.. ||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456999999999999999999999999999 899999998 999999999999999999999997 9999999999999
Q ss_pred EecCCc
Q 014217 418 LKRDNK 423 (428)
Q Consensus 418 ~a~~~~ 423 (428)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997664
No 141
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.3e-18 Score=133.88 Aligned_cols=94 Identities=38% Similarity=0.676 Sum_probs=85.3
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
.....+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..++.+.
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred CCcceeeccCcccc
Q 014217 86 SSPLQVKYADGELE 99 (428)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (428)
++.|++.++.....
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 79999999875543
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=130.50 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=75.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC--CeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG--GKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~--g~~i~v 416 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|+..|||..++ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345699999999999999999999999999999998754 589999999999999999999999999 999999
Q ss_pred EEecCCcCC
Q 014217 417 QLKRDNKQN 425 (428)
Q Consensus 417 ~~a~~~~~~ 425 (428)
+|++.++.+
T Consensus 88 ~~a~~~~~~ 96 (97)
T 1why_A 88 DFAKSGPSS 96 (97)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999998764
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=128.21 Aligned_cols=82 Identities=26% Similarity=0.468 Sum_probs=75.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|. ++||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34467999999999999999999999999999999996 2499999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 014217 418 LKRDNKQNKP 427 (428)
Q Consensus 418 ~a~~~~~~~~ 427 (428)
+++.+..+.|
T Consensus 78 ~a~~~~~~~~ 87 (92)
T 2dgt_A 78 LSTSRLRTAS 87 (92)
T ss_dssp ESSCCCSCCC
T ss_pred EccCCCCCCC
Confidence 9999877654
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.4e-19 Score=133.77 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEE
Q 014217 339 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g--~~l~g~~i~ 415 (428)
..+.++|||+|||++ +++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|..|+..||+ ..|+|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456799999999998 999999999999999999999743 59999999999999999999875 459999999
Q ss_pred EEEecCCcCC
Q 014217 416 VQLKRDNKQN 425 (428)
Q Consensus 416 v~~a~~~~~~ 425 (428)
|.||+.+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999877653
No 145
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=2.3e-18 Score=129.85 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=72.2
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..+.++|||+|||. ++++++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|+..|||..++|++|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44679999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred EecCCc
Q 014217 418 LKRDNK 423 (428)
Q Consensus 418 ~a~~~~ 423 (428)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998765
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-19 Score=129.56 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=73.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|+..++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999999 9999999999987
No 147
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-19 Score=138.04 Aligned_cols=88 Identities=20% Similarity=0.382 Sum_probs=77.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++|+++|+++|+.||.|..|.+..+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45699999999999999999999999999954433322237889999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 014217 420 RDNKQNKP 427 (428)
Q Consensus 420 ~~~~~~~~ 427 (428)
+.+..+.+
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 99887765
No 148
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=132.72 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=76.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEE-EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
...++|||+|||+++++++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|+.. |+..++||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45699999999999999999999999999987 888888 5999999999999999999999998 99999999999999
Q ss_pred ecCCc
Q 014217 419 KRDNK 423 (428)
Q Consensus 419 a~~~~ 423 (428)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 149
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=133.68 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=75.3
Q ss_pred CCceEEEeCCCCCC------CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe-E
Q 014217 341 PGANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-K 413 (428)
Q Consensus 341 ~~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~-~ 413 (428)
..++|||+|||..+ ++++|+++|+.||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|+|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999998 35899999999999999999999999999999998 9
Q ss_pred EEEEEecCCc
Q 014217 414 LKVQLKRDNK 423 (428)
Q Consensus 414 i~v~~a~~~~ 423 (428)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997654
No 150
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=5.5e-19 Score=140.94 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=76.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCC---eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 416 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v 416 (428)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+|++ |||..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35699999999999999999999999999 89999999985 9999999999999999999999 9999999999999
Q ss_pred EEecCC
Q 014217 417 QLKRDN 422 (428)
Q Consensus 417 ~~a~~~ 422 (428)
.++..+
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998654
No 151
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-19 Score=138.08 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=78.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++++++|+++|+.||.|.. .++.++.+|.++|||||+|.+.++|.+|++ |||..|+|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45699999999999999999999999999988 666776688999999999999999999999 9999999999999999
Q ss_pred cCCcCCC
Q 014217 420 RDNKQNK 426 (428)
Q Consensus 420 ~~~~~~~ 426 (428)
+.+..++
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 9887664
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=133.11 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||+++|+++|+++|+.| .|.+|+|+.++ +|+++|||||+|.+.++|.+|+ .+||..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999 89999999997 5999999999999999999999 689999999999998876
Q ss_pred C
Q 014217 421 D 421 (428)
Q Consensus 421 ~ 421 (428)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 153
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.2e-18 Score=133.84 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCC-CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
..++|||+|||+++++++|+++|+.|| .|..|.|.. +.++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 347899999999999999999999999999999999999
Q ss_pred cCCcC
Q 014217 420 RDNKQ 424 (428)
Q Consensus 420 ~~~~~ 424 (428)
+.++.
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 87654
No 154
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=133.52 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=75.7
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
+.+.++|||+|||+++|+++|+++|++||.|.+|++++|+.|++++|||||+|.+.++|++|++.||+..+ .| +.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~-~g--r~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV-MG--NIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999764 44 7888
Q ss_pred eeccCc
Q 014217 91 VKYADG 96 (428)
Q Consensus 91 ~~~~~~ 96 (428)
+.++..
T Consensus 80 V~~a~~ 85 (110)
T 3s8s_A 80 AQLDIK 85 (110)
T ss_dssp EEECST
T ss_pred EEECCC
Confidence 887753
No 155
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=5.3e-18 Score=130.23 Aligned_cols=91 Identities=38% Similarity=0.678 Sum_probs=81.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+..+..+..+
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 4455678999999999999999999999999999999999998 799999999999999999999999999887666668
Q ss_pred cceeeccCcccc
Q 014217 88 PLQVKYADGELE 99 (428)
Q Consensus 88 ~~~~~~~~~~~~ 99 (428)
.|.+.++.....
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 899998876544
No 156
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=1.6e-18 Score=133.39 Aligned_cols=80 Identities=25% Similarity=0.452 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 338 TGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 338 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...+.++|||+|||.++++++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34467999999999999999999999999999999997 5899999999999999999999999999999999
Q ss_pred EecCCcCC
Q 014217 418 LKRDNKQN 425 (428)
Q Consensus 418 ~a~~~~~~ 425 (428)
|++.++.+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99987765
No 157
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.7e-19 Score=138.84 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=76.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|+. |||..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456999999999999999999999999999997777776799999999999999999999999 9999999999999998
Q ss_pred cCC
Q 014217 420 RDN 422 (428)
Q Consensus 420 ~~~ 422 (428)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 158
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=130.56 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=75.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|.++ +|||||+|.+.++|.+|++.|||..|+|++|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346799999999999999999999999999999999755 58999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
++.+...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9987653
No 159
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=126.25 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l-~g~~l~g~~i~v~ 417 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 446799999999999999999999999999999999865 589999999999999999999 9999999999999
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
|||
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 160
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=133.01 Aligned_cols=83 Identities=24% Similarity=0.491 Sum_probs=76.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345699999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 014217 419 KRDNKQNKP 427 (428)
Q Consensus 419 a~~~~~~~~ 427 (428)
++.+....+
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4g_A 96 GKESPDMTS 104 (109)
T ss_dssp CCCCCSSCC
T ss_pred cCCCCCCCC
Confidence 999876543
No 161
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=130.41 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC-----eEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-----KKLK 415 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g-----~~i~ 415 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|+| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5699999999999999999999999999999999865 899999999999999999999999999 9999
Q ss_pred EEEecCCcCC
Q 014217 416 VQLKRDNKQN 425 (428)
Q Consensus 416 v~~a~~~~~~ 425 (428)
|++|+.+...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999987654
No 162
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=127.55 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=73.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcC--CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v 416 (428)
..+.++|||+|||.++++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|+..|||..|+|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3466999999999999999999999999 999999874 579999999999999999999999999999999
Q ss_pred EEecCCcCCC
Q 014217 417 QLKRDNKQNK 426 (428)
Q Consensus 417 ~~a~~~~~~~ 426 (428)
++++.+..+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999877643
No 163
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=6.6e-18 Score=130.79 Aligned_cols=79 Identities=24% Similarity=0.467 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCC-CCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 341 PGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 341 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
..++|||+|||.+ +++++|+++|+.||.|.+|+| ++|||||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4689999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 014217 420 RDNKQNKP 427 (428)
Q Consensus 420 ~~~~~~~~ 427 (428)
+.++.++|
T Consensus 98 ~~~~~~~~ 105 (110)
T 1wf1_A 98 GEPKPDRS 105 (110)
T ss_dssp CCCCSCCC
T ss_pred CCCCCCCC
Confidence 97665543
No 164
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=129.42 Aligned_cols=81 Identities=25% Similarity=0.485 Sum_probs=73.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
....++|||+|||.++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|+|++|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999997 666654 4689999999999999999999999999999999999
Q ss_pred ecCCcC
Q 014217 419 KRDNKQ 424 (428)
Q Consensus 419 a~~~~~ 424 (428)
++.++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998764
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=5.4e-18 Score=129.59 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+ +|||||+|.+.++|.+|+..|||..|+|+.|+|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456999999999999999999999999999999986 359999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 014217 420 RDNKQNK 426 (428)
Q Consensus 420 ~~~~~~~ 426 (428)
+.+..++
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 9877654
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=126.16 Aligned_cols=80 Identities=29% Similarity=0.472 Sum_probs=73.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|+|.+ |||||+|.+.++|.+|+..|||..|+|++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999963 4899999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+..+.
T Consensus 78 a~~~~~~~ 85 (90)
T 2dnp_A 78 STKGQKKS 85 (90)
T ss_dssp SCCCCCCC
T ss_pred CCCCCCCC
Confidence 99886554
No 167
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=132.50 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=74.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecCC
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 422 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~~ 422 (428)
++|||+|||.++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5799999999999999999999999999999999999987
Q ss_pred cCCC
Q 014217 423 KQNK 426 (428)
Q Consensus 423 ~~~~ 426 (428)
..+.
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7543
No 168
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.3e-18 Score=131.65 Aligned_cols=83 Identities=23% Similarity=0.405 Sum_probs=76.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
..+.++|||+|||.++++++|+ ++|+.||.|.+|+|.. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467999999999999999999 9999999999999873 57788999999999999999999999999999999
Q ss_pred EEEEecCCcC
Q 014217 415 KVQLKRDNKQ 424 (428)
Q Consensus 415 ~v~~a~~~~~ 424 (428)
+|+|++.+..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999998754
No 169
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=129.17 Aligned_cols=83 Identities=14% Similarity=0.304 Sum_probs=75.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|..+ . .++.++|||||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999988766 2 4789999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
++.+...+
T Consensus 88 a~~~~~~~ 95 (96)
T 1fjc_A 88 TGEKGGTR 95 (96)
T ss_dssp CSSSCCCC
T ss_pred cCCCCCCC
Confidence 99887654
No 170
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=9.2e-19 Score=127.56 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=67.8
Q ss_pred ceEEEeCCCCCC------CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe-EEE
Q 014217 343 ANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KLK 415 (428)
Q Consensus 343 ~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~-~i~ 415 (428)
++|||+|||..+ ++++|+++|+.||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 799999999999 779999999999999999987 34899999999999999999999999999999999 887
Q ss_pred E
Q 014217 416 V 416 (428)
Q Consensus 416 v 416 (428)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=128.11 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCC-eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcC-ceeCCeEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG-CQLGGKKLKVQ 417 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g-~~l~g~~i~v~ 417 (428)
.+.++|||+|||.++++++|+++|+.||. |..+.+ . ++|||||+|.+.++|.+|+..||| ..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35699999999999999999999999999 555555 2 368999999999999999999999 99999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+++.+..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999887654
No 172
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=3.9e-18 Score=133.31 Aligned_cols=106 Identities=17% Similarity=0.312 Sum_probs=92.5
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.+. .++|||||+|.+.++|.+|++.||+..+ .| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNV-SN--RYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBS-SS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--eEE
Confidence 45677899999999999999999999999999999998764 4689999999999999999999998764 44 889
Q ss_pred eeeccCcccccccceEEEecCCCCCCHHHHHHhccccCC
Q 014217 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128 (428)
Q Consensus 90 ~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~ 128 (428)
.+.++.+.... .+++...++++|.++|++||.
T Consensus 78 ~v~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 99998765443 577888899999999999984
No 173
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.6e-18 Score=130.97 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|.. ++|||||+|.+.++|.+|+..|||..++|+.|+|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999973 46999999999999999999999999999999999998
Q ss_pred CC
Q 014217 421 DN 422 (428)
Q Consensus 421 ~~ 422 (428)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 174
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=7.3e-18 Score=138.35 Aligned_cols=121 Identities=21% Similarity=0.386 Sum_probs=101.9
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-cCCCCCCCCCCcceeeccCcc-----------------cccccceEEEecCCCCC
Q 014217 53 RASRGCCFVICPSRQEADKAVNAC-HNKKTLPGASSPLQVKYADGE-----------------LERLEHKLFIGMLPKNV 114 (428)
Q Consensus 53 ~~~~g~afV~f~~~~~a~~al~~l-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~v~nlp~~~ 114 (428)
.+.+|+++|+|.+.++|++|++.+ |+.. +.| .+.+.++... .....++|||+|||.++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~-~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG-VDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHT-CCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCC-CCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 467899999999999999999999 7764 444 5666665431 11236899999999999
Q ss_pred CHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 115 t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
++++|+++|+.||.|..+.+..+ ++|||||+|.+.++|..|++.|++.. +.|+. |.|.++.++
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~--l~v~~a~~~ 148 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRT-LCGCR--VRVELSNGE 148 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSC-SSSSC--CEEEECCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCE-ECCeE--EEEEEcCCC
Confidence 99999999999999999999876 58999999999999999999999977 77775 888888654
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.6e-18 Score=129.96 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=73.3
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecC----HHH----HHHHHH--HhcCce
Q 014217 343 ANLFIYHI----PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES----PAS----AQNAIA--MMNGCQ 408 (428)
Q Consensus 343 ~~l~V~nL----p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~----~e~----A~~A~~--~l~g~~ 408 (428)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|++||+++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 434 788888 789999
Q ss_pred eCCeEEEEEEecCC
Q 014217 409 LGGKKLKVQLKRDN 422 (428)
Q Consensus 409 l~g~~i~v~~a~~~ 422 (428)
|+|++|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997754
No 176
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=6.2e-19 Score=135.71 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=77.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCC---eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+|+. +||..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346799999999999999999999999998 89999999985 9999999999999999999999 999999999999
Q ss_pred EEEecCCc
Q 014217 416 VQLKRDNK 423 (428)
Q Consensus 416 v~~a~~~~ 423 (428)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987543
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.7e-17 Score=129.79 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=73.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeE-EEEEecCHHHHHHHHHHhcCceeCC--eEEEEEE
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQL 418 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~~ 418 (428)
...|||+||++.+|+++|+++|++||.|.+|+|.... +|+ |||+|.+.++|..|++.|||..|.| ++|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3677899999999999999999999999999987643 577 9999999999999999999999988 9999999
Q ss_pred ecCCcCCCCC
Q 014217 419 KRDNKQNKPY 428 (428)
Q Consensus 419 a~~~~~~~~~ 428 (428)
++.+.-+.+|
T Consensus 103 ak~~~l~v~~ 112 (130)
T 3zzy_A 103 SKLTSLNVKY 112 (130)
T ss_dssp CSCSSCCCCC
T ss_pred cCCCceeEEe
Confidence 9988765543
No 178
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.4e-18 Score=128.90 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 339 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 339 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..+.++|||+|||. ++++++|+++|+.||.|.+|+|. +|||||+|.+.++|..|+..|||..+.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44679999999998 99999999999999999999983 5899999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 014217 418 LKRDNKQNK 426 (428)
Q Consensus 418 ~a~~~~~~~ 426 (428)
+++.+..+.
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998876543
No 179
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=2.8e-18 Score=131.02 Aligned_cols=82 Identities=28% Similarity=0.457 Sum_probs=76.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+. +|..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56999999999999999999999999999999999998 99999999999999999999999 9999999999999998
Q ss_pred CCcCC
Q 014217 421 DNKQN 425 (428)
Q Consensus 421 ~~~~~ 425 (428)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76544
No 180
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-19 Score=142.25 Aligned_cols=88 Identities=20% Similarity=0.400 Sum_probs=82.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEE--------EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
..+.++|||+|||.++++++|+++|+.||.|.+ |+|+.++.+++++|||||+|.+.++|.+|+..|||..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346799999999999999999999999999999 899999888999999999999999999999999999999
Q ss_pred CeEEEEEEecCCcCCC
Q 014217 411 GKKLKVQLKRDNKQNK 426 (428)
Q Consensus 411 g~~i~v~~a~~~~~~~ 426 (428)
|++|+|++++.+..+.
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999999887653
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.7e-18 Score=165.97 Aligned_cols=84 Identities=18% Similarity=0.424 Sum_probs=80.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
.+..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7654
No 182
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=128.16 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=77.9
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 93 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 93 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--c
Confidence 4455667899999999999999999999999999999999999999999999999999999999999999875 444 8
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++.+.
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 8888887643
No 183
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=124.70 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=77.6
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..+ .| +.|+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 78 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL-AG--RPMR 78 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS-SS--SCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee-CC--cEEE
Confidence 35789999999999999999999999999999999999998999999999999999999999999998764 44 8899
Q ss_pred eeccCcccc
Q 014217 91 VKYADGELE 99 (428)
Q Consensus 91 ~~~~~~~~~ 99 (428)
+.++.....
T Consensus 79 V~~a~~~~~ 87 (95)
T 2dnz_A 79 VGHVTERLD 87 (95)
T ss_dssp EEESSCCCC
T ss_pred EEEcccccC
Confidence 988865443
No 184
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=132.24 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+|.|+. ++|||||+|.+.++|.+|+..|||..|+|+.|+|+||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999874 35899999999999999999999999999999999998
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
...-
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7543
No 185
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=126.34 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=79.5
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
...+.++...++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|++|++.||+..+ .|
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g 84 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DG 84 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE-TT
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC
Confidence 44566778889999999999999999999999999999999999998999999999999999999999999988654 44
Q ss_pred CCCcceeeccC
Q 014217 85 ASSPLQVKYAD 95 (428)
Q Consensus 85 ~~~~~~~~~~~ 95 (428)
+.|.+.+++
T Consensus 85 --~~l~v~~a~ 93 (95)
T 2cqc_A 85 --RRIRVSGPS 93 (95)
T ss_dssp --EEEEEECCS
T ss_pred --EEEEEEecC
Confidence 888888875
No 186
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=122.11 Aligned_cols=74 Identities=24% Similarity=0.439 Sum_probs=66.5
Q ss_pred CCce-EEEeCCCCCCCHHH----HHHHhhcC-CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 341 PGAN-LFIYHIPQEFGDQE----LGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 341 ~~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
+..| |||+|||+++++++ |+++|+.| |.|.+| ++ |+|||+|.+.++|.+|++.|||..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4455 99999999999887 66899999 499999 33 999999999999999999999999999999
Q ss_pred EEEEecCCcC
Q 014217 415 KVQLKRDNKQ 424 (428)
Q Consensus 415 ~v~~a~~~~~ 424 (428)
+|+||+.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999998753
No 187
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=128.99 Aligned_cols=91 Identities=21% Similarity=0.366 Sum_probs=81.3
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
.....+..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+ .|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g 84 (103)
T 2cq0_A 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY-DH 84 (103)
T ss_dssp CCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE-TT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee-CC
Confidence 34456778899999999999999999999999999999999999998999999999999999999999999998764 44
Q ss_pred CCCcceeeccCccc
Q 014217 85 ASSPLQVKYADGEL 98 (428)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (428)
+.|++.++.+..
T Consensus 85 --~~l~v~~a~~~~ 96 (103)
T 2cq0_A 85 --LILNVEWAKPST 96 (103)
T ss_dssp --EECEEEESSCCC
T ss_pred --cEEEEEECCCCC
Confidence 888998886544
No 188
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=4.3e-18 Score=126.63 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=69.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
.+|||+|||+++|+++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|++|++.||+..+ .| +.|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS-SS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee-CC--EEEEEE
Confidence 5899999999999999999999999 999999999999999999999999999999999999999764 44 788888
Q ss_pred ccCccc
Q 014217 93 YADGEL 98 (428)
Q Consensus 93 ~~~~~~ 98 (428)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 876543
No 189
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=4.7e-18 Score=148.96 Aligned_cols=82 Identities=26% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCC--CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 014217 419 KRDN 422 (428)
Q Consensus 419 a~~~ 422 (428)
++.+
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 190
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=9.3e-19 Score=125.61 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=71.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 344 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 344 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
+|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++. ++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 899999999999986
No 191
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=127.44 Aligned_cols=87 Identities=25% Similarity=0.463 Sum_probs=78.8
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+.. +.| +
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g--~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG--R 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS--S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--E
Confidence 5567788999999999999999999999999999999999998899999999999999999999999999976 444 8
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|++.++.+.
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 8888887643
No 192
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=129.13 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=74.1
Q ss_pred CCCceEEE--eCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee-----CCe
Q 014217 340 PPGANLFI--YHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL-----GGK 412 (428)
Q Consensus 340 ~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l-----~g~ 412 (428)
.+.++||| +||+.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45689999 669999999999999999999999988643 69999999999999999999999998 799
Q ss_pred EEEEEEecCCcCCCC
Q 014217 413 KLKVQLKRDNKQNKP 427 (428)
Q Consensus 413 ~i~v~~a~~~~~~~~ 427 (428)
+|.|.|++..+..+|
T Consensus 97 ~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 97 TLYLNFVEKVQWSGP 111 (114)
T ss_dssp ECEEEEESCCCCSSC
T ss_pred EEEEEecccCcccCC
Confidence 999999998776665
No 193
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=123.69 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=73.6
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~ 79 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIR 79 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEE
Confidence 3567899999999999999999999999999999999998899999999999999999999999999865 444 8888
Q ss_pred eeccCc
Q 014217 91 VKYADG 96 (428)
Q Consensus 91 ~~~~~~ 96 (428)
+.++.+
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 888764
No 194
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=3.1e-17 Score=137.71 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=81.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
..+.++|||+|||.++++++|+++|+.||.|.+|.|..++ ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 014217 419 KRDNKQNK 426 (428)
Q Consensus 419 a~~~~~~~ 426 (428)
|.......
T Consensus 164 a~~~~~~~ 171 (177)
T 2f3j_A 164 VASQIDLE 171 (177)
T ss_dssp ESSGGGGC
T ss_pred ecCCCCCC
Confidence 98765543
No 195
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=6.4e-18 Score=132.06 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=75.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5689999999999999999999999999999999865 4458999999999999999999999999999999999998
Q ss_pred CCcC
Q 014217 421 DNKQ 424 (428)
Q Consensus 421 ~~~~ 424 (428)
.+..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7543
No 196
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=123.32 Aligned_cols=80 Identities=29% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|| ++++++|+++|+.||.|.+|+|. .++|||||+|.+.++|.+|+..|||..|+|++|+|+|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46699999996 89999999999999999999984 35699999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 014217 420 RDNKQNKP 427 (428)
Q Consensus 420 ~~~~~~~~ 427 (428)
+.+....+
T Consensus 85 ~~~~~~~~ 92 (97)
T 1x5p_A 85 RKQPMLDS 92 (97)
T ss_dssp SSCCCCCS
T ss_pred CCCCCCCC
Confidence 98876553
No 197
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=127.21 Aligned_cols=90 Identities=24% Similarity=0.359 Sum_probs=80.5
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 84 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG-- 84 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS--
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--
Confidence 45566788999999999999999999999999999999999999899999999999999999999999999875 444
Q ss_pred CcceeeccCcccc
Q 014217 87 SPLQVKYADGELE 99 (428)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (428)
+.|++.++.....
T Consensus 85 ~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 KPIRVNKASAHNK 97 (105)
T ss_dssp CBCEEEETTTTSC
T ss_pred eEEEEEECCCCCc
Confidence 8899988875543
No 198
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=125.11 Aligned_cols=85 Identities=21% Similarity=0.407 Sum_probs=77.0
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~ 78 (428)
....+...++|||+|||+++|+++|+++|+.||.|.+ ++++.++.+++++|||||+|.+.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3556778899999999999999999999999999999 99999998999999999999999999999999998
Q ss_pred CCCCCCCCCcceeecc
Q 014217 79 KKTLPGASSPLQVKYA 94 (428)
Q Consensus 79 ~~~~~~~~~~~~~~~~ 94 (428)
.. +.| +.|++.++
T Consensus 86 ~~-~~g--~~l~V~~A 98 (99)
T 2la6_A 86 KE-FSG--NPIKVSFA 98 (99)
T ss_dssp CB-SSS--SBCEEEEC
T ss_pred CE-eCC--cEEEEEec
Confidence 75 444 78888765
No 199
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.4e-17 Score=130.12 Aligned_cols=89 Identities=24% Similarity=0.327 Sum_probs=79.4
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++||+.||+..+ .+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g-- 94 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI-GM-- 94 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TT--
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE-CC--
Confidence 345556779999999999999999999999999999999999998999999999999999999999999998764 44
Q ss_pred CcceeeccCccc
Q 014217 87 SPLQVKYADGEL 98 (428)
Q Consensus 87 ~~~~~~~~~~~~ 98 (428)
+.|++.++.+..
T Consensus 95 ~~l~V~~a~~~~ 106 (115)
T 2cpz_A 95 KRLKVQLKRSKN 106 (115)
T ss_dssp EECEEECCCCSC
T ss_pred EEEEEEEcCCCC
Confidence 889998886543
No 200
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=126.07 Aligned_cols=81 Identities=30% Similarity=0.317 Sum_probs=73.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEE-EEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 418 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~ 418 (428)
...++|||+|||.++++++|+++|+.||.|.+| .|+.++.+ |.|||+|.+.++|.+|+..|||..|+|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356999999999999999999999999999999 48777644 4499999999999999999999999999999999
Q ss_pred ecCCcC
Q 014217 419 KRDNKQ 424 (428)
Q Consensus 419 a~~~~~ 424 (428)
++.+..
T Consensus 89 a~~~~~ 94 (96)
T 2e44_A 89 IPDEMA 94 (96)
T ss_dssp CCCCCS
T ss_pred cCcccc
Confidence 998854
No 201
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=2e-17 Score=129.23 Aligned_cols=92 Identities=23% Similarity=0.422 Sum_probs=81.8
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
...+.+..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 84 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG 84 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 3456677889999999999999999999999999999999999998899999999999999999999999999865 444
Q ss_pred CCCcceeeccCcccc
Q 014217 85 ASSPLQVKYADGELE 99 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (428)
+.|.+.|+.....
T Consensus 85 --~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 85 --RQIRTNWATRKPP 97 (115)
T ss_dssp --EECEEEESSCCCC
T ss_pred --EEEEEEEccCCCC
Confidence 8889988865443
No 202
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=133.85 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=74.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCe----EEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRV----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i----~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|.+|+.. |+..|+||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 356899999999999999999999999975 689999985 999999999999999999999997 99999999999
Q ss_pred EEEecCC
Q 014217 416 VQLKRDN 422 (428)
Q Consensus 416 v~~a~~~ 422 (428)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987643
No 203
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=126.34 Aligned_cols=91 Identities=24% Similarity=0.374 Sum_probs=80.6
Q ss_pred ccccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
+..++.+..+.++|||+|||+++|+++|+++|+.||.|.+|+++.+ +++++|||||+|.+.++|.+|++.||+..+ .
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~ 81 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV-A 81 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS-S
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe-C
Confidence 4456677789999999999999999999999999999999999998 789999999999999999999999998764 4
Q ss_pred CCCCcceeeccCcccc
Q 014217 84 GASSPLQVKYADGELE 99 (428)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (428)
+ +.|.+.++.+...
T Consensus 82 g--~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 82 T--KPLYVALAQRKEE 95 (103)
T ss_dssp S--SBCEEEECSSCCC
T ss_pred C--cEEEEEEeccccc
Confidence 4 8899988875443
No 204
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=124.77 Aligned_cols=86 Identities=34% Similarity=0.523 Sum_probs=76.7
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ ||+.. +.| +.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eE
Confidence 455678999999999999999999999999999999999999899999999999999999999998 87764 444 78
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|.+.++.+..
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 8888886543
No 205
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=126.77 Aligned_cols=92 Identities=28% Similarity=0.436 Sum_probs=80.6
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeC-CCCCCccceEEEEeCCHHHHHHHHHHh-cCCCCC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRGCCFVICPSRQEADKAVNAC-HNKKTL 82 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~al~~l-~~~~~~ 82 (428)
.....+....++|||+|||+++|+++|+++|+.||.|.+|+++++ +.+++++|||||+|.+.++|.+|++.| |+.. +
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~ 84 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-L 84 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-S
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-E
Confidence 345566778899999999999999999999999999999999999 788999999999999999999999999 6765 4
Q ss_pred CCCCCcceeeccCcccc
Q 014217 83 PGASSPLQVKYADGELE 99 (428)
Q Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (428)
.| +.|.+.++.....
T Consensus 85 ~g--~~l~v~~a~~~~~ 99 (107)
T 2cph_A 85 YG--RRLVLEWADSEVT 99 (107)
T ss_dssp SS--CBCEEEECCCCCC
T ss_pred CC--CEEEEEeCCCCCC
Confidence 44 7888888865443
No 206
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=2.3e-17 Score=134.05 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~~ 418 (428)
...+|||+||++.+|+++|+++|++||.|.+|+|.... ++|||||+|.+.++|..|++.|||..|.| ++|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34778999999999999999999999999999986432 57999999999999999999999999955 9999999
Q ss_pred ecCCcCC
Q 014217 419 KRDNKQN 425 (428)
Q Consensus 419 a~~~~~~ 425 (428)
++.+.-+
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9987644
No 207
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.2e-17 Score=122.89 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=74.7
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+ .| +.|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 79 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RTI 79 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE-CC--cEE
Confidence 346789999999999999999999999999999999999988999999999999999999999999998764 44 788
Q ss_pred eeecc
Q 014217 90 QVKYA 94 (428)
Q Consensus 90 ~~~~~ 94 (428)
++.++
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88775
No 208
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=2.1e-17 Score=121.03 Aligned_cols=81 Identities=27% Similarity=0.458 Sum_probs=74.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
+.+|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.||+..+ .| +.|++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g--~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-NG--RPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee-CC--cEEEEEe
Confidence 36899999999999999999999999999999999988999999999999999999999999998764 44 8888888
Q ss_pred cCcc
Q 014217 94 ADGE 97 (428)
Q Consensus 94 ~~~~ 97 (428)
+.+.
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8643
No 209
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=125.84 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=78.2
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+ .+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 80 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF-QG--RML 80 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES-SS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE-CC--cEE
Confidence 456789999999999999999999999999999999999998899999999999999999999999998754 44 888
Q ss_pred eeeccCcccc
Q 014217 90 QVKYADGELE 99 (428)
Q Consensus 90 ~~~~~~~~~~ 99 (428)
.+.++.....
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 8888875543
No 210
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=5.1e-18 Score=128.81 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=75.6
Q ss_pred cccCceEEEeCCCC------CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 11 SEERVKLFVGQVPK------HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 11 ~~~~~~l~v~nLp~------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
....++|||+|||+ ++++++|+++|++||.|.+|+++.++.|++++|||||+|.+.++|++|++.||+..+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g- 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL- 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCcceeeccCc
Q 014217 85 ASSPLQVKYADG 96 (428)
Q Consensus 85 ~~~~~~~~~~~~ 96 (428)
.+.|++.++.+
T Consensus 82 -~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 -KHRLFLYTMKD 92 (100)
T ss_dssp -SCBCEEEESHH
T ss_pred -CeEEEEEECch
Confidence 27888887754
No 211
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=3.3e-17 Score=124.68 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCC--C---CCHHHHHHHhhcCCCeEEEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q 014217 340 PPGANLFIYHIPQ--E---FGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 413 (428)
Q Consensus 340 ~~~~~l~V~nLp~--~---~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~ 413 (428)
.++++|+|+||.. + -++++|+++|++||.|.+|+|+.++.+ ++++|+|||+|.+.++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3669999999952 2 378999999999999999999988643 688999999999999999999999999999999
Q ss_pred EEEEEecC
Q 014217 414 LKVQLKRD 421 (428)
Q Consensus 414 i~v~~a~~ 421 (428)
|+|.+++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 212
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=126.97 Aligned_cols=88 Identities=25% Similarity=0.349 Sum_probs=79.1
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 83 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG--R 83 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT--B
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC--c
Confidence 3456678999999999999999999999999999999999999899999999999999999999999999876 444 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|.+.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 88988887543
No 213
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=125.36 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=73.6
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
+.....++|||+|||+++|+++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|.+||+ +++.. +.| +.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r~ 80 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--TD 80 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--TT
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--EE
Confidence 4556779999999999999999999999999999999999987 9999999999999999999999 76654 555 78
Q ss_pred ceeeccCc
Q 014217 89 LQVKYADG 96 (428)
Q Consensus 89 ~~~~~~~~ 96 (428)
|.+.+...
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 88877654
No 214
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=124.94 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=77.9
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 86 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--N 86 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--C
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 4456778999999999999999999999999999999999998 89999999999999999999999999865 444 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|++.++.+..
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 88988887543
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=127.96 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=80.3
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc------C
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH------N 78 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~------~ 78 (428)
+.........++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|| +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3445667788999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCCCCCCCCcceeeccCccc
Q 014217 79 KKTLPGASSPLQVKYADGEL 98 (428)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ 98 (428)
.. +.| +.|.+.++.+..
T Consensus 86 ~~-~~g--~~l~v~~a~~~~ 102 (111)
T 1x4h_A 86 LK-LDG--RQLKVDLAVTRD 102 (111)
T ss_dssp EE-SSS--CEEEEECCCCCC
T ss_pred cE-EcC--EEEEEEECCCCc
Confidence 54 444 888888886543
No 216
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=124.80 Aligned_cols=81 Identities=17% Similarity=0.353 Sum_probs=70.4
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCC-CCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~-~~~~~~~~ 87 (428)
..+...++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|+.|++.|++. ..+.| +
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r 82 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--Q 82 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT--E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC--E
Confidence 46778899999999999999999999999999999999876 479999999999999999998753 34555 8
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++...
T Consensus 83 ~l~V~~A~~~ 92 (105)
T 1sjq_A 83 PIYIQFSNHK 92 (105)
T ss_dssp ECCBCCCSSS
T ss_pred EEEEEEcCCC
Confidence 8888888654
No 217
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=125.04 Aligned_cols=86 Identities=23% Similarity=0.398 Sum_probs=76.8
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhh-cCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.+....++|||+|||+++|+++|+++|+. ||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+...+.| +
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~ 80 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--K 80 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--S
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--E
Confidence 45567899999999999999999999999 9999999999999 899999999999999999999999998763555 7
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++...
T Consensus 81 ~l~v~~a~~~ 90 (104)
T 2dhg_A 81 PVRLSVAIPK 90 (104)
T ss_dssp CCCCCBCCCC
T ss_pred eEEEEEccCC
Confidence 7888877543
No 218
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=2.8e-17 Score=130.60 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=79.3
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...++...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++||+.||+..+ .|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i-~g-- 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DG-- 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS-SS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--
Confidence 345667789999999999999999999999999999999999998999999999999999999999999998764 44
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|++.|+.+.
T Consensus 116 ~~l~V~~a~~~ 126 (129)
T 2kxn_B 116 RRIRVDFSITK 126 (129)
T ss_dssp SCCEESCCSSS
T ss_pred EEEEEEEecCC
Confidence 88898888654
No 219
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=125.44 Aligned_cols=88 Identities=28% Similarity=0.427 Sum_probs=78.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+.++|||+|||+++|+++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|++.||+..+ .+ +
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 82 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DG--R 82 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT-TS--C
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--e
Confidence 34556789999999999999999999999999999999999998999999999999999999999999998764 44 7
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|++.++....
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 88888876443
No 220
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=138.78 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEE------EEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAK------VFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 412 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~ 412 (428)
..+.++|||+|||+++|+++|+++|+.||.|.+|. +... .+|+++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34669999999999999999999999999987751 2112 3788999999999999999999999999999999
Q ss_pred EEEEEEecCCcC
Q 014217 413 KLKVQLKRDNKQ 424 (428)
Q Consensus 413 ~i~v~~a~~~~~ 424 (428)
.|+|++|+++..
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 221
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=125.26 Aligned_cols=86 Identities=27% Similarity=0.431 Sum_probs=76.8
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCcee-EEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD-EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
......++|||+|||+++|+++|+++|+.||.|. +|++++++.+++++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 80 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPG--A 80 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESS--C
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCC--C
Confidence 4456789999999999999999999999999999 99999999899999999999999999999999999875 444 4
Q ss_pred c----ceeeccCcc
Q 014217 88 P----LQVKYADGE 97 (428)
Q Consensus 88 ~----~~~~~~~~~ 97 (428)
. |++.|+...
T Consensus 81 ~~~~~l~v~~a~~~ 94 (99)
T 2div_A 81 TPAKRFKLNYATYS 94 (99)
T ss_dssp SSCEECCEEETTCC
T ss_pred CcceeEEEeecCCC
Confidence 4 888887654
No 222
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=2.5e-17 Score=124.13 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=74.9
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~ 92 (428)
++++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+.. +.| +.|.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 36899999999999999999999999999999999999899999999999999999999999999875 444 888888
Q ss_pred ccCcc
Q 014217 93 YADGE 97 (428)
Q Consensus 93 ~~~~~ 97 (428)
++.+.
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 88654
No 223
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=124.10 Aligned_cols=84 Identities=26% Similarity=0.468 Sum_probs=76.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 86 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL-FG--R 86 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE-TT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee-CC--c
Confidence 44567789999999999999999999999999999999999998999999999999999999999999998754 34 7
Q ss_pred cceeecc
Q 014217 88 PLQVKYA 94 (428)
Q Consensus 88 ~~~~~~~ 94 (428)
.|++.++
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 8888775
No 224
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=2.8e-17 Score=127.27 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=78.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+ .| +
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~ 96 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--Q 96 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CC--c
Confidence 44556778999999999999999999999999999999999998999999999999999999999999998754 44 8
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++.+.
T Consensus 97 ~l~V~~a~~~ 106 (110)
T 1oo0_B 97 TIQVDWCFVK 106 (110)
T ss_dssp ECEEEESEES
T ss_pred EEEEEEcccC
Confidence 8888887644
No 225
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=122.89 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=73.3
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+ .| +.++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV-QA--QMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC-CE--ESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE-ee--EEEe
Confidence 35688999999999999999999999999999999999998999999999999999999999999998754 33 6666
Q ss_pred eeccC
Q 014217 91 VKYAD 95 (428)
Q Consensus 91 ~~~~~ 95 (428)
+.++.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 66653
No 226
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=122.30 Aligned_cols=80 Identities=25% Similarity=0.459 Sum_probs=71.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|+. |||..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45899999999999999999999999999987 55555655 99999999999999999 99999999999999998
Q ss_pred CCcCCC
Q 014217 421 DNKQNK 426 (428)
Q Consensus 421 ~~~~~~ 426 (428)
.+....
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 776543
No 227
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=2.1e-18 Score=137.99 Aligned_cols=83 Identities=11% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
...++|||+|||+++|+++|+++|+.|| |.+|+|+.++ +|+++|||||+|.+.++|.+|+ .+|+..|+||.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3568999999999999999999999999 7799999997 5999999999999999999999 78999999999999999
Q ss_pred cCCcCC
Q 014217 420 RDNKQN 425 (428)
Q Consensus 420 ~~~~~~ 425 (428)
..+...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 877653
No 228
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=7.2e-18 Score=132.21 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=73.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeE--EEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVL--SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.++. |+++|||||+|.+.++|.+|+.. ++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 356899999999999999999999999 677 999999985 99999999999999999999985 7899999999999
Q ss_pred EecCC
Q 014217 418 LKRDN 422 (428)
Q Consensus 418 ~a~~~ 422 (428)
.+..+
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 229
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2e-17 Score=129.92 Aligned_cols=85 Identities=24% Similarity=0.334 Sum_probs=76.3
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+..+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 109 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT-- 109 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34566778999999999999999999999999999999999998899999999999999999999999999875 444
Q ss_pred Ccceeecc
Q 014217 87 SPLQVKYA 94 (428)
Q Consensus 87 ~~~~~~~~ 94 (428)
+.|++.++
T Consensus 110 ~~l~V~~a 117 (118)
T 2khc_A 110 KRLKVQLK 117 (118)
T ss_dssp EECCEEEC
T ss_pred EEEEEEec
Confidence 77777765
No 230
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=126.92 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=76.2
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
+....++|||+|||+++|+++|+++|+.||.|.+|.++.+. +++++|||||+|.+.++|++|++.||+..+ .| +.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g--~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL-HG--KAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC-SS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 45667899999999999999999999999999999999998 899999999999999999999999998764 44 788
Q ss_pred eeeccCccc
Q 014217 90 QVKYADGEL 98 (428)
Q Consensus 90 ~~~~~~~~~ 98 (428)
.+.+++...
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 888876443
No 231
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=126.82 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=79.3
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 82 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--R 82 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE-TT--E
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--c
Confidence 44566789999999999999999999999999999999999988999999999999999999999999988754 44 8
Q ss_pred cceeeccCcccc
Q 014217 88 PLQVKYADGELE 99 (428)
Q Consensus 88 ~~~~~~~~~~~~ 99 (428)
.|.+.++.+...
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2cqb_A 83 TIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 899988865443
No 232
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.8e-17 Score=121.62 Aligned_cols=76 Identities=26% Similarity=0.360 Sum_probs=70.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
..++|||+|||.++++++|+++|+.| .|.+|+|. +++|||||+|.+.++|.+|++.|||..++|++|+|++++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45899999999999999999999999 99999984 467999999999999999999999999999999999997
Q ss_pred CCc
Q 014217 421 DNK 423 (428)
Q Consensus 421 ~~~ 423 (428)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 233
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-16 Score=124.46 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=69.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeE-EEEEecCHHHHHHHHHHhcCceeCC--eEEEEEEe
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 419 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~F~~~e~A~~A~~~l~g~~l~g--~~i~v~~a 419 (428)
..|||+||++.+++++|+++|+.||.|.+|+|.. + +|| |||+|.+.++|..|++.|||..|.| +.|+|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4567999999999999999999999999999964 2 286 9999999999999999999999987 79999999
Q ss_pred cCCcCCC
Q 014217 420 RDNKQNK 426 (428)
Q Consensus 420 ~~~~~~~ 426 (428)
+.+.-..
T Consensus 100 k~~~l~v 106 (124)
T 2e5i_A 100 RPTRLNV 106 (124)
T ss_dssp SCSCCCC
T ss_pred cCCccee
Confidence 9876443
No 234
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=126.95 Aligned_cols=87 Identities=25% Similarity=0.371 Sum_probs=77.8
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
..+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+ .| +.
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 79 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF-SG--RA 79 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC-SS--SC
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--cE
Confidence 3455679999999999999999999999999999999999988999999999999999999999999998764 44 78
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|++.++....
T Consensus 80 l~v~~a~~~~ 89 (104)
T 1p1t_A 80 LRVDNAASEK 89 (104)
T ss_dssp BEEEETTCTT
T ss_pred EEEEeCCCcc
Confidence 8888886543
No 235
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=124.61 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=77.0
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEE-EEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
..+.++|||+|||+++|+++|+++|+.||.|.++ ++++++.+++++|||||+|.+.++|++|++.||+..+ .| +.|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 78 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL-CN--RPI 78 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE-TT--EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-CC--EEE
Confidence 3567999999999999999999999999999999 9999988999999999999999999999999998764 44 888
Q ss_pred eeeccCcccc
Q 014217 90 QVKYADGELE 99 (428)
Q Consensus 90 ~~~~~~~~~~ 99 (428)
.+.++.+...
T Consensus 79 ~v~~a~~~~~ 88 (96)
T 1x5t_A 79 TVSYAFKKDS 88 (96)
T ss_dssp EEEESCCCCC
T ss_pred EEEEecccCC
Confidence 9988865443
No 236
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=127.78 Aligned_cols=88 Identities=30% Similarity=0.436 Sum_probs=78.9
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
....++...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++||+.+++ .+.+
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g- 85 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDG- 85 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETT-
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCC-
Confidence 3455677889999999999999999999999999999999999998999999999999999999999999986 4555
Q ss_pred CCcceeeccCcc
Q 014217 86 SSPLQVKYADGE 97 (428)
Q Consensus 86 ~~~~~~~~~~~~ 97 (428)
+.|.+.++...
T Consensus 86 -~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 -RKANVNLAYLG 96 (116)
T ss_dssp -EECEEEESTTT
T ss_pred -EEEEEEEcccC
Confidence 88888887543
No 237
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=123.98 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=75.7
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCC---CCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+.++|||+|||+++|+++|+++|+.||.|..|+++.++. +++++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDG--HK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETT--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 5679999999999999999999999999999999999876 66899999999999999999999999875 444 88
Q ss_pred ceeeccCcccc
Q 014217 89 LQVKYADGELE 99 (428)
Q Consensus 89 ~~~~~~~~~~~ 99 (428)
|.+.++.....
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 89988865443
No 238
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=121.96 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=74.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.++. ++++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL-YG--R 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE-CC--C
Confidence 44566789999999999999999999999999999999999985 89999999999999999999999998764 44 8
Q ss_pred cceeeccC
Q 014217 88 PLQVKYAD 95 (428)
Q Consensus 88 ~~~~~~~~ 95 (428)
.|++.+++
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 88888765
No 239
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=126.64 Aligned_cols=89 Identities=24% Similarity=0.301 Sum_probs=79.4
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCcee--------EEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~ 78 (428)
...+....++|||+|||+++|+++|+++|+.||.|. .|+++.++.+++++|||||+|.+.++|++||+.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345667889999999999999999999999999999 699999988999999999999999999999999998
Q ss_pred CCCCCCCCCcceeeccCccc
Q 014217 79 KKTLPGASSPLQVKYADGEL 98 (428)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ 98 (428)
..+ .| +.|++.++....
T Consensus 88 ~~~-~g--~~l~V~~a~~~~ 104 (113)
T 2cpe_A 88 KDF-QG--SKLKVSLARKKP 104 (113)
T ss_dssp CEE-TT--EECEEECSSCCC
T ss_pred Ccc-CC--CEEEEEECCCCC
Confidence 764 44 888998886544
No 240
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.7e-17 Score=123.52 Aligned_cols=88 Identities=23% Similarity=0.454 Sum_probs=77.5
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
........++|||+|||+++|+++|+++|+.|| |.+|++++++.+++++|||||+|.+.++|++|| .||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g-- 82 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGD-- 82 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETT--
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECC--
Confidence 445667789999999999999999999999997 999999999999999999999999999999999 888865 444
Q ss_pred CcceeeccCcccc
Q 014217 87 SPLQVKYADGELE 99 (428)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (428)
+.|++.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 8888888865443
No 241
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=132.15 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=77.1
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeE--EEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCC----C
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK----K 80 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~----~ 80 (428)
........++|||+|||+++|+++|+++|+.||.|.. |++++|+.+++++|||||+|.+. +|.+|++.||+. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445577899999999999999999999999999976 99999999999999999999999 999999999987 4
Q ss_pred CCCCCCCcceeeccCccc
Q 014217 81 TLPGASSPLQVKYADGEL 98 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (428)
+.| +.|++.++.+..
T Consensus 95 -~~g--r~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 -IDG--KTINVEFAKGSK 109 (131)
T ss_dssp -GGG--CCCCCEECCCSC
T ss_pred -CCC--EEEEEEECCCCC
Confidence 334 788888876543
No 242
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=4.7e-17 Score=120.28 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=71.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..++.+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++. ++.. +.| +
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g--~ 80 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG--R 80 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--E
Confidence 45667889999999999999999999999999999999999998999999999999999999999965 4443 554 6
Q ss_pred cceeec
Q 014217 88 PLQVKY 93 (428)
Q Consensus 88 ~~~~~~ 93 (428)
.|.+++
T Consensus 81 ~i~v~~ 86 (87)
T 3s7r_A 81 VIDPKK 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 776665
No 243
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=124.38 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=75.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|++.||+.. +.| +.|.+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEc
Confidence 58999999999999999999999999999999887 67899999999999999999999876 444 77888887
Q ss_pred Ccccccc-----------cceEEEecCC
Q 014217 95 DGELERL-----------EHKLFIGMLP 111 (428)
Q Consensus 95 ~~~~~~~-----------~~~v~v~nlp 111 (428)
....... ..+|||+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 5443221 4578888885
No 244
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=133.27 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=73.5
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|++||+.||+.. +.| +.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEeE
Confidence 568999999999999999999999999 99999999999999999999999999999999999999875 444 8888
Q ss_pred eeccCc
Q 014217 91 VKYADG 96 (428)
Q Consensus 91 ~~~~~~ 96 (428)
+.++.+
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 888754
No 245
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=6.8e-17 Score=119.49 Aligned_cols=78 Identities=19% Similarity=0.372 Sum_probs=63.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee--CCeEEEE
Q 014217 339 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKV 416 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l--~g~~i~v 416 (428)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ ++|..+ +|++|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 346799999999999999999999999999999999864 68999999999999983 566664 5999999
Q ss_pred EEecCCcCC
Q 014217 417 QLKRDNKQN 425 (428)
Q Consensus 417 ~~a~~~~~~ 425 (428)
.+|+.+..+
T Consensus 79 ~~a~~k~~~ 87 (89)
T 3d2w_A 79 SNAEPKHNK 87 (89)
T ss_dssp EECC-----
T ss_pred EEcCCCCcC
Confidence 999987643
No 246
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=4.3e-17 Score=116.79 Aligned_cols=75 Identities=29% Similarity=0.433 Sum_probs=67.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
+|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ +|+.. +.| +.+.+.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 77765 444 77777653
No 247
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=4.1e-17 Score=121.17 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=74.3
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
.+.++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|+ .||+.. +.| +.|++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V 79 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKV 79 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEE
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEE
Confidence 45789999999999999999999999999999999999989999999999999999999999 888875 444 88888
Q ss_pred eccCcc
Q 014217 92 KYADGE 97 (428)
Q Consensus 92 ~~~~~~ 97 (428)
.++++.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 887653
No 248
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=123.77 Aligned_cols=88 Identities=15% Similarity=0.290 Sum_probs=77.2
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCC-CCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
.........++|||+|||+++|+++|+++|+.|| |.+|+++.++.+ ++++|||||+|.+.++|++|| .||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g 83 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN 83 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ETT
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eCC
Confidence 3445566789999999999999999999999999 999999999987 999999999999999999999 898875 444
Q ss_pred CCCcceeeccCccc
Q 014217 85 ASSPLQVKYADGEL 98 (428)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (428)
+.|.+.++....
T Consensus 84 --~~l~V~~a~~~~ 95 (104)
T 1wi8_A 84 --KRIRVDVADQAQ 95 (104)
T ss_dssp --EECEEEECCCCC
T ss_pred --cEEEEEEccCCC
Confidence 888888876543
No 249
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.7e-16 Score=118.57 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=74.7
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+.++|||+|||+++|+++|+++|+.||.|..|+++++ +++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 4567899999999999999999999999999999999985 68999999999999999999999999876 444 788
Q ss_pred eeeccCccc
Q 014217 90 QVKYADGEL 98 (428)
Q Consensus 90 ~~~~~~~~~ 98 (428)
++.++.+..
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 888876543
No 250
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=121.43 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=73.4
Q ss_pred cccccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcC-CCC
Q 014217 3 ESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKT 81 (428)
Q Consensus 3 ~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~-~~~ 81 (428)
.+...+.....+++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|++ ...
T Consensus 4 ~s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 4 GSSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp CCCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 34555667778899999999999999999999999999999988865 57999999999999999998863 223
Q ss_pred CCCCCCcceeeccCcc
Q 014217 82 LPGASSPLQVKYADGE 97 (428)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (428)
+.| +.|.+.++...
T Consensus 78 ~~G--r~l~V~~a~~~ 91 (101)
T 2cq1_A 78 LRN--QPIYIQYSNHK 91 (101)
T ss_dssp ETT--EECEEEECSCS
T ss_pred ECC--cEEEEEEcCcc
Confidence 444 88999888644
No 251
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=4.2e-17 Score=125.76 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=71.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..++.+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.++ ..+.| +
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g--~ 94 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--K 94 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCC--E
Confidence 4566778999999999999999999999999999999999999899999999999999999999999864 34555 7
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++.+.
T Consensus 95 ~l~V~~a~~~ 104 (109)
T 2rs2_A 95 TIDPKVAFPR 104 (109)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEccCC
Confidence 8888877644
No 252
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=118.27 Aligned_cols=76 Identities=28% Similarity=0.429 Sum_probs=69.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
++|||+|||+++|+++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.++ . .+.| +.+.+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCC--EEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999987 3 4555 67777654
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=123.47 Aligned_cols=87 Identities=23% Similarity=0.419 Sum_probs=76.5
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC----
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG---- 84 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~---- 84 (428)
....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+..+...
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 455678999999999999999999999999999999999998 899999999999999999999999999765321
Q ss_pred -CCCcceeeccCc
Q 014217 85 -ASSPLQVKYADG 96 (428)
Q Consensus 85 -~~~~~~~~~~~~ 96 (428)
..+++.+.|+++
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 347788887763
No 254
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=119.86 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=69.7
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC-CCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT-LPGA 85 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~-~~~~ 85 (428)
+.....++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++..+ +.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G- 86 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG- 86 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT-
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC-
Confidence 3455667899999999999999999999999999999999853 47999999999999999999988653 444
Q ss_pred CCcceeeccCc
Q 014217 86 SSPLQVKYADG 96 (428)
Q Consensus 86 ~~~~~~~~~~~ 96 (428)
++|.+.+++.
T Consensus 87 -r~i~V~~S~~ 96 (100)
T 3r27_A 87 -HPAFVNYSTS 96 (100)
T ss_dssp -EEEEEEECSC
T ss_pred -cEEEEEeccc
Confidence 8899988864
No 255
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.1e-16 Score=123.19 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=74.8
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL-DG--R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--c
Confidence 3455678999999999999999999999999999999999999 899999999999999999999999998764 44 7
Q ss_pred cceeeccC
Q 014217 88 PLQVKYAD 95 (428)
Q Consensus 88 ~~~~~~~~ 95 (428)
.|++.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 88887754
No 256
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.2e-16 Score=127.01 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=78.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.....+.++|||+|||+++|+++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 92 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MG--Q 92 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS-SS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--e
Confidence 44556678999999999999999999999999999999999998999999999999999999999999998764 44 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|.+.++....
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 88888875443
No 257
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=130.21 Aligned_cols=89 Identities=26% Similarity=0.404 Sum_probs=79.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..++...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+.. +.| +
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 112 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILN--K 112 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSS--C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--e
Confidence 3456677999999999999999999999999999999999999899999999999999999999999999875 444 7
Q ss_pred cceeeccCcccc
Q 014217 88 PLQVKYADGELE 99 (428)
Q Consensus 88 ~~~~~~~~~~~~ 99 (428)
.|++.++.....
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 888888865443
No 258
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=120.18 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=72.6
Q ss_pred ccccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC-CC
Q 014217 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TL 82 (428)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~-~~ 82 (428)
+..+.....++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++.. .+
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3445556677899999999999999999999999999999998764 5799999999999999999987643 34
Q ss_pred CCCCCcceeeccCcc
Q 014217 83 PGASSPLQVKYADGE 97 (428)
Q Consensus 83 ~~~~~~~~~~~~~~~ 97 (428)
.| +.|.+.++...
T Consensus 79 ~G--r~l~V~~a~~~ 91 (104)
T 1wex_A 79 AG--QQAFFNYSTSK 91 (104)
T ss_dssp SS--SBCEEEECSSS
T ss_pred CC--EEEEEEEccCc
Confidence 44 88888888643
No 259
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=120.63 Aligned_cols=89 Identities=25% Similarity=0.423 Sum_probs=77.5
Q ss_pred cccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
..........++|||+|||+++|+++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 82 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTV-VEG 82 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 34556778889999999999999999999999999999999999864 389999999999999999999999876 444
Q ss_pred CCCcceeeccCccc
Q 014217 85 ASSPLQVKYADGEL 98 (428)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (428)
+.|.+.++....
T Consensus 83 --~~l~v~~a~~~~ 94 (103)
T 2cq3_A 83 --RKIEVNNATARV 94 (103)
T ss_dssp --EECEEEECCSSC
T ss_pred --EEEEEEEcccCC
Confidence 888888886543
No 260
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=123.30 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=70.8
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCC-CCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.......++|||+|||+++|+++|+++|+.|| |.+|+++.++ .+|+++|||||+|.+.++|.+|+ .||+.. +.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g-- 87 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN-- 87 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--
Confidence 44567789999999999999999999999999 9999999998 58999999999999999999999 898876 444
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|++.++...
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 78888887643
No 261
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=3.6e-17 Score=123.13 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=72.1
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
......++|||+|||+++|+++|+++|+.||.|..++++.++.+++++|||||+|.+.++|++|++.||+..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~ 86 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GS--RK 86 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE-CC--cE
Confidence 4455679999999999999999999999999999999999988999999999999999999999999998754 44 77
Q ss_pred ceeeccC
Q 014217 89 LQVKYAD 95 (428)
Q Consensus 89 ~~~~~~~ 95 (428)
|++.++.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 8877654
No 262
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7e-17 Score=123.89 Aligned_cols=88 Identities=27% Similarity=0.343 Sum_probs=77.6
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++||+. ++.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g-- 84 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG-- 84 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT--
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC--
Confidence 345677889999999999999999999999999999999999998999999999999999999999998 6654 555
Q ss_pred CcceeeccCccc
Q 014217 87 SPLQVKYADGEL 98 (428)
Q Consensus 87 ~~~~~~~~~~~~ 98 (428)
+.|.+.++.+..
T Consensus 85 ~~l~V~~a~~~~ 96 (105)
T 2dh8_A 85 RNIDPKPCTPRG 96 (105)
T ss_dssp EEEBCCCSCCSS
T ss_pred EEEEEEEccCCC
Confidence 788888876543
No 263
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-17 Score=122.95 Aligned_cols=86 Identities=16% Similarity=0.250 Sum_probs=76.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~ 85 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--R 85 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--e
Confidence 3345667899999999999999999999999999989999988899999999999999999999999999875 444 8
Q ss_pred cceeeccCc
Q 014217 88 PLQVKYADG 96 (428)
Q Consensus 88 ~~~~~~~~~ 96 (428)
.|++.++..
T Consensus 86 ~l~V~~a~~ 94 (98)
T 2cqp_A 86 KVKLVLGSG 94 (98)
T ss_dssp ECEEEESSC
T ss_pred EEEEEEcCC
Confidence 888887753
No 264
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=7.7e-17 Score=119.43 Aligned_cols=82 Identities=15% Similarity=0.381 Sum_probs=73.1
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCC-ccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
..++|||+|||+++|+++|+++|+.||.|.+++++.+..++. ++|||||+|.+.++|++|++.||+.. +.| +.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDG--QEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECC--eEEEE
Confidence 568999999999999999999999999999999999887666 89999999999999999999999876 444 78888
Q ss_pred eccCcc
Q 014217 92 KYADGE 97 (428)
Q Consensus 92 ~~~~~~ 97 (428)
.++.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 877543
No 265
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=122.87 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=75.9
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEEE-eCCCCCCccceEEEEeCCHHHHHHHHHHhc-CCCCCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNII-KDKTTRASRGCCFVICPSRQEADKAVNACH-NKKTLPGASS 87 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afV~f~~~~~a~~al~~l~-~~~~~~~~~~ 87 (428)
..+.++|||+|||+++|+++|+++|+.||. |.+|.++ .++.+++++|||||+|.+.++|.+|++.|+ +...+.| +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--H 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--B
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--C
Confidence 456899999999999999999999999998 9999998 788889999999999999999999999995 3244555 8
Q ss_pred cceeeccCcccc
Q 014217 88 PLQVKYADGELE 99 (428)
Q Consensus 88 ~~~~~~~~~~~~ 99 (428)
.|++.|+.+...
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 889988875443
No 266
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=123.51 Aligned_cols=82 Identities=16% Similarity=0.360 Sum_probs=70.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCC-CCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~-~~~~~~~ 86 (428)
.....++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++. ..+.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-- 96 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG-- 96 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT--
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC--
Confidence 445667899999999999999999999999999999999876 479999999999999999998752 34555
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|.+.++...
T Consensus 97 r~l~V~~a~~k 107 (119)
T 2ad9_A 97 QPIYIQFSNHK 107 (119)
T ss_dssp BCCEEEECSSS
T ss_pred eEEEEEEccCC
Confidence 88888888643
No 267
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=120.62 Aligned_cols=87 Identities=22% Similarity=0.413 Sum_probs=76.2
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+....++|||+|||+++|+++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|++.||+..+ .|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g-- 82 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI-LG-- 82 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE-TT--
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc-CC--
Confidence 345667789999999999999999999999999999999999864 3789999999999999999999998764 44
Q ss_pred CcceeeccCccc
Q 014217 87 SPLQVKYADGEL 98 (428)
Q Consensus 87 ~~~~~~~~~~~~ 98 (428)
+.|++.++....
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2cqi_A 83 KEVKVNWATTPS 94 (103)
T ss_dssp EEEEEEECCCTT
T ss_pred CeEEEEECCCCc
Confidence 889998887543
No 268
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.2e-17 Score=114.99 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.6
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
-.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+.++ .| ++|++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l-~g--r~I~V 75 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL-AN--TTIFA 75 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE-CC--cEEEE
Confidence 3577899999999999999999999999999999865 578999999999999999999998764 33 66666
Q ss_pred ecc
Q 014217 92 KYA 94 (428)
Q Consensus 92 ~~~ 94 (428)
.++
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 655
No 269
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-17 Score=127.27 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=75.6
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|| .||+.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~ 95 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR-LLG--VP 95 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE-ETT--EE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE-eCC--eE
Confidence 34456789999999999999999999999999999999999999999999999999999999999 988875 444 88
Q ss_pred ceeeccCcc
Q 014217 89 LQVKYADGE 97 (428)
Q Consensus 89 ~~~~~~~~~ 97 (428)
|.+.++...
T Consensus 96 l~V~~a~~~ 104 (114)
T 2cq4_A 96 IIVQASQAE 104 (114)
T ss_dssp EEEEEHHHH
T ss_pred EEEEecCCC
Confidence 888887543
No 270
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=120.94 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=71.8
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeE-EEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.......++|||+|||+++|+++|+++|+.||.|.+ |+++.+ .+++++|||||+|.+.++|++||+. ++. .+.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~g-- 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGH-- 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCC--
Confidence 345567899999999999999999999999999987 888888 6899999999999999999999997 654 4555
Q ss_pred CcceeeccCc
Q 014217 87 SPLQVKYADG 96 (428)
Q Consensus 87 ~~~~~~~~~~ 96 (428)
+.|++.++..
T Consensus 84 r~i~v~~~~~ 93 (104)
T 1wg5_A 84 RYIEIFKSSR 93 (104)
T ss_dssp SCCEEEEECT
T ss_pred cEEEEEECCH
Confidence 6777766543
No 271
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=122.52 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=76.3
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+..+ .+ +
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 84 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL-FD--R 84 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe-CC--C
Confidence 3455678999999999999999999999999999999999998 599999999999999999999999998764 44 8
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 8888887643
No 272
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.4e-16 Score=130.18 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=78.1
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
......++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|++||+.||+..+ .+ +.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~ 110 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL-DD--RI 110 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE-TT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--eE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999998764 44 88
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|.|.|+.+..
T Consensus 111 l~V~~a~~~~ 120 (156)
T 1h2v_Z 111 IRTDWDAGFK 120 (156)
T ss_dssp CEEEEESCCC
T ss_pred EEEEECCCCC
Confidence 9998886543
No 273
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=5.9e-17 Score=120.57 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=70.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeecc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 94 (428)
++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.+ |.+|++.||+.. +.| +.|++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEc
Confidence 68999999999999999999999999999999999989999999999999999 999999999876 444 88888887
Q ss_pred Ccc
Q 014217 95 DGE 97 (428)
Q Consensus 95 ~~~ 97 (428)
...
T Consensus 78 ~~~ 80 (90)
T 2ki2_A 78 NPK 80 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 274
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=119.39 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=76.0
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.+......++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|++||+. +. .+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g-- 82 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDG-- 82 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETT--
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCC--
Confidence 455667789999999999999999999999999999999999998999999999999999999999984 32 3554
Q ss_pred CcceeeccCccc
Q 014217 87 SPLQVKYADGEL 98 (428)
Q Consensus 87 ~~~~~~~~~~~~ 98 (428)
+.|.+.++....
T Consensus 83 ~~l~v~~a~~~~ 94 (103)
T 2cqg_A 83 RWCDCKLPNSKQ 94 (103)
T ss_dssp EEEEEECCCTTC
T ss_pred eEEEEEecCCCC
Confidence 788888876543
No 275
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=124.58 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=67.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCC---CCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT---GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~ 417 (428)
..++|||+|||.++++++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 569999999999999999999999999999 888877766 7999999999999999999999994 3666666665
Q ss_pred Eec
Q 014217 418 LKR 420 (428)
Q Consensus 418 ~a~ 420 (428)
.++
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 444
No 276
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=118.78 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=73.8
Q ss_pred cccccCceEEEeCCCCCCCHHHHH----HHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
....+.++|||+|||+++|+++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|++|++.||+..+ .|
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~-~g 79 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI-GS 79 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE-TT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE-CC
Confidence 345577899999999999999999 99999999999999998865 78999999999999999999998764 44
Q ss_pred CCCcceeeccCccc
Q 014217 85 ASSPLQVKYADGEL 98 (428)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (428)
+.|++.++.+..
T Consensus 80 --r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 --KKILVSLATGAS 91 (96)
T ss_dssp --EEEEEEECCCSS
T ss_pred --eEEEEEEcCCCC
Confidence 889998886543
No 277
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.66 E-value=3.6e-16 Score=121.22 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCceEEEeCCC--CCC---CHHHHHHHhhcCCCeEEEEEEeeCC----CCCeeeEEEEEecCHHHHHHHHHHhcCceeCC
Q 014217 341 PGANLFIYHIP--QEF---GDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 411 (428)
Q Consensus 341 ~~~~l~V~nLp--~~~---t~~~L~~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g 411 (428)
++++|+|+||- .++ .++||++.|++||.|.+|+|++++. +++++|+|||+|.+.++|.+|+..|||++|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67999999993 333 3789999999999999999998864 45788999999999999999999999999999
Q ss_pred eEEEEEEecC
Q 014217 412 KKLKVQLKRD 421 (428)
Q Consensus 412 ~~i~v~~a~~ 421 (428)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 278
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=9e-17 Score=127.31 Aligned_cols=86 Identities=22% Similarity=0.361 Sum_probs=76.3
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|+ .||+.. +.| +.
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~ 106 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RT 106 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eE
Confidence 34456799999999999999999999999999999999999889999999999999999999999 788875 444 88
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|.+.+++...
T Consensus 107 l~V~~a~~~~ 116 (124)
T 2jwn_A 107 IKVLPKRTNM 116 (124)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888886543
No 279
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=9.3e-17 Score=125.09 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=67.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeE-----EE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK-----LK 415 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~-----i~ 415 (428)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+|++.|||..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999755 89999999999999999999999999998 78
Q ss_pred EEEecCCcC
Q 014217 416 VQLKRDNKQ 424 (428)
Q Consensus 416 v~~a~~~~~ 424 (428)
|..++.+..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 777765543
No 280
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=1.9e-16 Score=124.13 Aligned_cols=80 Identities=29% Similarity=0.481 Sum_probs=71.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEe
Q 014217 340 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 419 (428)
Q Consensus 340 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a 419 (428)
.+.++|||+|+ ++++++|+++|+.||.|.+|.|. .++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35699999996 69999999999999999999985 35699999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 014217 420 RDNKQNKP 427 (428)
Q Consensus 420 ~~~~~~~~ 427 (428)
+.+....+
T Consensus 109 ~~~~~~~~ 116 (121)
T 2bz2_A 109 RKQPMLDA 116 (121)
T ss_dssp CSSCC---
T ss_pred CCCCCCCC
Confidence 98876543
No 281
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=120.59 Aligned_cols=85 Identities=14% Similarity=0.314 Sum_probs=71.2
Q ss_pred cccccccccCceEEEeCCCCC-CCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC-CC
Q 014217 5 KKEKKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TL 82 (428)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~-~~ 82 (428)
+.-+.....+++|||+|||++ +|+++|+++|++||.|.+|++++ ++|||||+|.+.++|..|++.|++.. .+
T Consensus 16 k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 16 QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred hhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 333456777899999999998 99999999999999999999974 35799999999999999999987532 35
Q ss_pred CCCCCcceeeccCcc
Q 014217 83 PGASSPLQVKYADGE 97 (428)
Q Consensus 83 ~~~~~~~~~~~~~~~ 97 (428)
.| +.|.+.++...
T Consensus 90 ~G--r~l~V~~a~~~ 102 (112)
T 1x4f_A 90 QG--RCVKVDLSEKY 102 (112)
T ss_dssp SS--SCCEEEEECSC
T ss_pred CC--EEEEEEECccc
Confidence 55 88888887643
No 282
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=120.53 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=70.1
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
..+...++|||+|||+++|++||+++|+.||.+ +|+++.++ +++++|||||+|.+.++|++||+ +|+. .+.+ +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~g--r~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA-NMQH--RY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC-CSSS--SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC-eECC--cE
Confidence 355677899999999999999999999999955 89999998 89999999999999999999995 6664 4555 67
Q ss_pred ceeeccCc
Q 014217 89 LQVKYADG 96 (428)
Q Consensus 89 ~~~~~~~~ 96 (428)
|++.++..
T Consensus 84 i~V~~~~~ 91 (102)
T 1wez_A 84 VELFLNST 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 77766543
No 283
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=1.3e-16 Score=127.97 Aligned_cols=120 Identities=20% Similarity=0.287 Sum_probs=76.3
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccC-cccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEcc
Q 014217 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 136 (428)
Q Consensus 58 ~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 136 (428)
++|.+|++...+..|++.+++........ . .+.. +......++|||+|||.++++++|+++|+.||.|..+.+..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~--~--~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS--M--SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp -------------------------------C--CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC--C--CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 67888888888888888887754332211 1 1222 22233468999999999999999999999999999999988
Q ss_pred CC-CCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceEEEEeCCCH
Q 014217 137 GS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (428)
Q Consensus 137 ~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (428)
+. ++.++|||||+|.+.++|.+|++.|++.. +.|+. |.|.++...
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g~~--l~V~~a~~~ 127 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGRE--LRVQMARYG 127 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSSSC--CEEEECCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCEE--EEEEECCCC
Confidence 76 78899999999999999999999999987 77775 888888654
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=4.1e-16 Score=123.44 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=75.6
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++++++|+++|+.||.|.+|+++.+. +++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEE
Confidence 45667899999999999999999999999999999999998 89999999999999999999999999875 444 788
Q ss_pred eeeccCcc
Q 014217 90 QVKYADGE 97 (428)
Q Consensus 90 ~~~~~~~~ 97 (428)
++.++...
T Consensus 107 ~V~~a~~~ 114 (124)
T 2kt5_A 107 DIQLVASQ 114 (124)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCC
Confidence 88887643
No 285
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=125.26 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=76.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|++||+. ++. .+.| +
T Consensus 21 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g--~ 96 (116)
T 1x4b_A 21 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH-SIDG--R 96 (116)
T ss_dssp CCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE-EETT--E
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc-EECC--E
Confidence 34456679999999999999999999999999999999999998999999999999999999999988 554 3555 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|.+.++.+..
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 88888886543
No 286
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=117.29 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=73.6
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+....++|||+|||+++|+++|+++|+.| .|.+|+++.+ .+++++|||||+|.+.++|++||+ ||+.. +.| +.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--cE
Confidence 345678999999999999999999999999 8999999999 689999999999999999999999 98875 444 78
Q ss_pred ceeeccCcc
Q 014217 89 LQVKYADGE 97 (428)
Q Consensus 89 ~~~~~~~~~ 97 (428)
|.+.++...
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 888887654
No 287
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1e-16 Score=127.81 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=72.2
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCc---eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
.+....++|||+|||+++|+++|+++|+.||. |.+|++++++. |+++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES-MGH- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC-
Confidence 34566799999999999999999999999998 89999999987 9999999999999999999999 87764 554
Q ss_pred CCcceeeccC
Q 014217 86 SSPLQVKYAD 95 (428)
Q Consensus 86 ~~~~~~~~~~ 95 (428)
+.|++.++.
T Consensus 115 -r~i~V~~a~ 123 (136)
T 2hgl_A 115 -RYIEVFKSH 123 (136)
T ss_dssp -SEEEEEECC
T ss_pred -EEEEEEECC
Confidence 777777664
No 288
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=119.31 Aligned_cols=85 Identities=15% Similarity=0.364 Sum_probs=73.6
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||.|..|++..+ ++++|||||+|.+.++|++|++.||+..+ .+ +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 89 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY-DG--Y 89 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--e
Confidence 345667899999999999999999999999999999998654 45889999999999999999999998754 44 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|++.+++...
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 89998887543
No 289
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-17 Score=125.46 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=74.3
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCce-eEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALV-DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+.+.++|||+|||+++|+++|+++|+.||.| .+|+++.++ +++++|||||+|.+.++|++||+. |+. .+.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~-~~~g-- 83 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK-KLNG-- 83 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE-EETT--
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC-ccCC--
Confidence 3456678999999999999999999999999999 889999999 899999999999999999999987 664 4555
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|.+.++...
T Consensus 84 r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 REAFVHVVTLE 94 (114)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 78888877543
No 290
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=114.88 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=60.7
Q ss_pred CceEEEeCCCCCC------CHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 14 RVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 14 ~~~l~v~nLp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
+++|||+|||+.+ |+++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|.+|++.||+..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 4789999999999 789999999999999999987 34789999999999999999999999999764
No 291
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=122.72 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=73.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCc---eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
..+....++|||+|||+++|+++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g 81 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY-MGQ 81 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC-SSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce-eCC
Confidence 456678899999999999999999999999998 89999999987 9999999999999999999999 87754 555
Q ss_pred CCCcceeeccCc
Q 014217 85 ASSPLQVKYADG 96 (428)
Q Consensus 85 ~~~~~~~~~~~~ 96 (428)
+.|++.++..
T Consensus 82 --r~i~V~~a~~ 91 (107)
T 2lmi_A 82 --RYVEVYEINN 91 (107)
T ss_dssp --SCCCCEECCH
T ss_pred --eEEEEEECCH
Confidence 6777777653
No 292
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=4e-16 Score=118.76 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=71.4
Q ss_pred CCceEEEeCC--CCCCC--------HHHHHHHhhcCCCeEEEEEEeeCCC--CCeeeEEEEEecCHHHHHHHHHHhcCce
Q 014217 341 PGANLFIYHI--PQEFG--------DQELGNAFQAFGRVLSAKVFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGCQ 408 (428)
Q Consensus 341 ~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~g~~ 408 (428)
++++|.|.|+ +.++. +++|++.|++||.|.+|+|++++.+ +.++|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6699999999 43443 4799999999999999999988744 3689999999999999999999999999
Q ss_pred eCCeEEEEEEecC
Q 014217 409 LGGKKLKVQLKRD 421 (428)
Q Consensus 409 l~g~~i~v~~a~~ 421 (428)
|+||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 293
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=7.7e-16 Score=121.25 Aligned_cols=83 Identities=12% Similarity=0.264 Sum_probs=71.1
Q ss_pred cccccCceEEEeCCCCCCCHHHHH----HHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
......++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|++.||+..+ .|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF-QG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC-TT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe-CC
Confidence 345567899999999999999876 6999999999887753 578999999999999999999999999864 44
Q ss_pred CCCcceeeccCcc
Q 014217 85 ASSPLQVKYADGE 97 (428)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (428)
+.|++.|+...
T Consensus 100 --r~l~V~~a~~~ 110 (127)
T 2a3j_A 100 --NPLVITFSETP 110 (127)
T ss_dssp --SCCEEEECCCC
T ss_pred --CEEEEEEccCc
Confidence 78999988654
No 294
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=121.18 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=74.4
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||.|.+|+++.++ ++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 97 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV-VEG--R 97 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE-ETT--E
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE-ECC--E
Confidence 4556678999999999999999999999999999999999986 4589999999999999999999999876 444 8
Q ss_pred cceeeccCc
Q 014217 88 PLQVKYADG 96 (428)
Q Consensus 88 ~~~~~~~~~ 96 (428)
.|++.++.+
T Consensus 98 ~l~V~~a~~ 106 (109)
T 2err_A 98 KIEVNNATA 106 (109)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 888888764
No 295
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=118.87 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=70.4
Q ss_pred ccccccCceEEEeCCCC-CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC-CCCCC
Q 014217 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPGA 85 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~-~~~~~ 85 (428)
+....++++|||+|||+ ++|++||+++|++||.|.+|++++++ |||||+|.+.++|..|++.||+.. .+.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G- 81 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG- 81 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT-
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC-
Confidence 34455789999999999 99999999999999999999998764 699999999999999999998653 3455
Q ss_pred CCcceeeccCcc
Q 014217 86 SSPLQVKYADGE 97 (428)
Q Consensus 86 ~~~~~~~~~~~~ 97 (428)
+.|.+.++...
T Consensus 82 -r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 -KPVRVHLSQKY 92 (102)
T ss_dssp -EECEEEEECCC
T ss_pred -cEEEEEECCCC
Confidence 88888888643
No 296
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=5.6e-16 Score=114.46 Aligned_cols=71 Identities=25% Similarity=0.487 Sum_probs=66.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAF----G-------RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 409 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l 409 (428)
+.++|||+|||.++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56999999999999999999999999 8 8999998755 599999999999999999 9999999
Q ss_pred CCeEEEEEE
Q 014217 410 GGKKLKVQL 418 (428)
Q Consensus 410 ~g~~i~v~~ 418 (428)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999973
No 297
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=119.88 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=71.7
Q ss_pred ccccCceEEEeCCCCCC------CHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 10 SSEERVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
.....++|||+|||+.+ |+++|+++|+.||.|.+|+++ ..+|+++|||||+|.+.++|.+|++.||+..+ .
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-D 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC-S
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc-C
Confidence 44557899999999999 789999999999999999988 35789999999999999999999999999764 4
Q ss_pred CCCC-cceeeccCc
Q 014217 84 GASS-PLQVKYADG 96 (428)
Q Consensus 84 ~~~~-~~~~~~~~~ 96 (428)
| + .|++.++..
T Consensus 88 g--~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 K--QHTFRVNLFTD 99 (105)
T ss_dssp T--TCEEEEECSCC
T ss_pred C--CceEEEEEcch
Confidence 4 6 888888764
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=1.5e-16 Score=124.41 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCc---eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
.+....++|||+|||+++|+++|+++|+.||. |..|+++.++. ++++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES-MGH- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT-
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC-
Confidence 44567899999999999999999999999998 89999999986 9999999999999999999999 87754 554
Q ss_pred CCcceeeccC
Q 014217 86 SSPLQVKYAD 95 (428)
Q Consensus 86 ~~~~~~~~~~ 95 (428)
+.|++.++.
T Consensus 88 -r~i~V~~a~ 96 (118)
T 2db1_A 88 -RYIEVFKSH 96 (118)
T ss_dssp -EEEEEEEEC
T ss_pred -eEEEEEECC
Confidence 677776654
No 299
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-16 Score=117.48 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|++|... ...+.|++|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4699999999999999999999999999999999754 579999999999999754322 334599999999999
Q ss_pred CCcCCC
Q 014217 421 DNKQNK 426 (428)
Q Consensus 421 ~~~~~~ 426 (428)
.+..+.
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877653
No 300
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=2e-16 Score=113.30 Aligned_cols=74 Identities=23% Similarity=0.433 Sum_probs=65.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeec
Q 014217 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (428)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~ 93 (428)
+|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++. ++. .+.| +.+.+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g--~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH-NVGL--SKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC-CBTT--BCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC-eECC--EEEEEEE
Confidence 699999999999999999999999999999999998999999999999999999999985 444 3555 6666554
No 301
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=126.00 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=74.4
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.++++++++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 133 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--R 133 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--E
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 3456678999999999999999999999999999999999998899999999999999999999999998865 444 7
Q ss_pred cceeecc
Q 014217 88 PLQVKYA 94 (428)
Q Consensus 88 ~~~~~~~ 94 (428)
.|++.++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 7777653
No 302
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=126.31 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=72.3
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ ||+.. +.| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i 96 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RFI 96 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SCB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEE
Confidence 45567899999999999999999999999999887777777789999999999999999999999 87765 555 788
Q ss_pred eeeccCc
Q 014217 90 QVKYADG 96 (428)
Q Consensus 90 ~~~~~~~ 96 (428)
.+.++..
T Consensus 97 ~V~~a~~ 103 (124)
T 1wel_A 97 QVHPITK 103 (124)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8877653
No 303
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=121.40 Aligned_cols=87 Identities=15% Similarity=0.290 Sum_probs=76.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHH---HHHhhcCceeEEEEEeCCCCC---CccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKTTR---ASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
.......++|||+|||+++|+++|+ ++|++||.|.+|+++++..++ +++|||||+|.+.++|++||+.||+..
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~- 87 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV- 87 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-
Confidence 4455678899999999999999999 999999999999999988654 566999999999999999999999876
Q ss_pred CCCCCCcceeeccCcc
Q 014217 82 LPGASSPLQVKYADGE 97 (428)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (428)
+.| +.|++.++.+.
T Consensus 88 ~~g--r~l~V~~a~~k 101 (111)
T 2cpi_A 88 VDG--RTLKASLGTTK 101 (111)
T ss_dssp ETT--EEEEEESCCCC
T ss_pred ECC--EEEEEEecccc
Confidence 444 88999888654
No 304
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.2e-15 Score=130.04 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=73.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEecC
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 421 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~~ 421 (428)
.++|||+|||.++++++|+++|+.||.|.+|+|+++. ++.++|||||+|.+.++|.+|+..+ +..++|+.|+|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999986 6999999999999999999999876 4599999999999876
Q ss_pred CcC
Q 014217 422 NKQ 424 (428)
Q Consensus 422 ~~~ 424 (428)
-..
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 443
No 305
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=112.19 Aligned_cols=79 Identities=29% Similarity=0.519 Sum_probs=69.5
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 72 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYK-LHG--VNI 72 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCB-CSS--CBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCc-cCC--cEE
Confidence 45678999999999999999999999999999999987 4699999999999999999999875 444 889
Q ss_pred eeeccCcccc
Q 014217 90 QVKYADGELE 99 (428)
Q Consensus 90 ~~~~~~~~~~ 99 (428)
++.++.....
T Consensus 73 ~v~~a~~~~~ 82 (90)
T 2dnq_A 73 NVEASKNKSK 82 (90)
T ss_dssp EEECSSCCCC
T ss_pred EEEECCCCCC
Confidence 9988865443
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-16 Score=121.61 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=73.7
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+....++|||+|||+++|+++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|++||+ ||+..+ .| +.
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~-~g--~~ 86 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-FG--NE 86 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB-TT--BC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE-CC--cE
Confidence 34556899999999999999999999999999887 677777789999999999999999999998 988764 44 88
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|++.++.+..
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 8998886543
No 307
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=115.95 Aligned_cols=85 Identities=31% Similarity=0.468 Sum_probs=73.7
Q ss_pred ccccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
+...+....+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..+ .
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~-~ 77 (99)
T 2cpj_A 5 SSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL-R 77 (99)
T ss_dssp SSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB-T
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe-C
Confidence 3445566778899999999999999999999999999999999865 57999999999999999999998764 4
Q ss_pred CCCCcceeeccCcc
Q 014217 84 GASSPLQVKYADGE 97 (428)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (428)
| +.|++.++...
T Consensus 78 g--~~l~v~~a~~~ 89 (99)
T 2cpj_A 78 G--KQLRVRFACHS 89 (99)
T ss_dssp T--BCCEEEESSCC
T ss_pred C--ceEEEEEcCCC
Confidence 4 88888888654
No 308
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=6e-16 Score=135.56 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=72.9
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..+ .+ +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~-~G--r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HG--QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB-TT--BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE-CC--EEeE
Confidence 667899999999999999999999999 999999999999999999999999999999999999998764 44 7888
Q ss_pred eeccCc
Q 014217 91 VKYADG 96 (428)
Q Consensus 91 ~~~~~~ 96 (428)
|.++..
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 887754
No 309
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=1.1e-15 Score=127.22 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|++||+.||+..+ .| +.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--QTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 345567899999999999999999999999999999999998999999999999999999999999999754 44 888
Q ss_pred eeeccCcc
Q 014217 90 QVKYADGE 97 (428)
Q Consensus 90 ~~~~~~~~ 97 (428)
.|.|+...
T Consensus 145 ~V~~a~~~ 152 (165)
T 1rk8_A 145 QVDWCFVK 152 (165)
T ss_dssp EEEESEEC
T ss_pred EEEEecCC
Confidence 88887543
No 310
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-15 Score=116.07 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=70.5
Q ss_pred CCCCceEEEeCCCCCCC-----------HHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc
Q 014217 339 GPPGANLFIYHIPQEFG-----------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 407 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~ 407 (428)
..+.++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34679999999944332 5899999999999999966 443 37899999999999999999999999
Q ss_pred eeCCeEEEEEEecCCcC
Q 014217 408 QLGGKKLKVQLKRDNKQ 424 (428)
Q Consensus 408 ~l~g~~i~v~~a~~~~~ 424 (428)
.|+|++|+|.++..+..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999987654
No 311
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=119.48 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=68.1
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
..+.++|||+|||+++|++||+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|++|| .+|+. .+.+ +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~g--r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRM-LMIQ--RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTE-EETT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCC-eECC--eEEE
Confidence 3456899999999999999999999999 799999999985 999999999999999999999 57665 4555 6777
Q ss_pred eeccC
Q 014217 91 VKYAD 95 (428)
Q Consensus 91 ~~~~~ 95 (428)
+..+.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76554
No 312
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=113.85 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=71.3
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.||+..+ .+.++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~ 83 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL-GGPDR 83 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC-SSSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe-CCCCc
Confidence 345567799999999999999999999999999999988754 57999999999999999999998754 42248
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|++.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 8999988754
No 313
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=5.7e-16 Score=121.40 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=69.6
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCcee--EEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
..+....++|||+|||+++|+++|+++|+.|+ |. +|+|+.|+. |+++|||||+|.+.++|++||+. ++ ..+.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~g- 110 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HK-ERIGH- 110 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TT-CCBTT-
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CC-CEECC-
Confidence 34556778999999999999999999999994 66 899999987 99999999999999999999986 45 45665
Q ss_pred CCcceeeccC
Q 014217 86 SSPLQVKYAD 95 (428)
Q Consensus 86 ~~~~~~~~~~ 95 (428)
+.|.+..+.
T Consensus 111 -R~I~V~~a~ 119 (126)
T 2hgm_A 111 -RYIEVFKSS 119 (126)
T ss_dssp -BCCCCEEEC
T ss_pred -EEEEEEECC
Confidence 677776654
No 314
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=111.50 Aligned_cols=79 Identities=23% Similarity=0.464 Sum_probs=68.2
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHh-cCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLPGA 85 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l-~~~~~~~~~ 85 (428)
...++...++|||+|||+++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.| ++. .+.|
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~-~~~g- 76 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL-IVNG- 76 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC-EETT-
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe-eECC-
Confidence 3455677899999999999999999999999999999999874 579999999999999999998 554 4555
Q ss_pred CCcceeecc
Q 014217 86 SSPLQVKYA 94 (428)
Q Consensus 86 ~~~~~~~~~ 94 (428)
+.|++.|+
T Consensus 77 -~~l~v~~a 84 (85)
T 2ytc_A 77 -RRLNVKWG 84 (85)
T ss_dssp -EECCEEEC
T ss_pred -CEEEEEec
Confidence 77888775
No 315
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=116.84 Aligned_cols=85 Identities=19% Similarity=0.369 Sum_probs=72.8
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
....+...++|||+|||+++|+++|+++|+.||.| +++.+ .+++++|||||+|.+.++|++|++.||+..+ .+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g-- 80 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI-EG-- 80 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE-TT--
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe-CC--
Confidence 34466788999999999999999999999999976 56666 5789999999999999999999999998754 34
Q ss_pred CcceeeccCccc
Q 014217 87 SPLQVKYADGEL 98 (428)
Q Consensus 87 ~~~~~~~~~~~~ 98 (428)
+.|++.++.+..
T Consensus 81 ~~l~v~~a~~~~ 92 (101)
T 2fc9_A 81 RAIRLELQGPRG 92 (101)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEEEcCCCC
Confidence 889998886543
No 316
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=116.16 Aligned_cols=88 Identities=25% Similarity=0.350 Sum_probs=75.6
Q ss_pred ccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
.........++|||+|||+++|+++|+++|+.|+ +|+++.++.+++++|||||+|.+.++|++||+.||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g- 81 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG- 81 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT-
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC-
Confidence 3455677889999999999999999999999774 57888998889999999999999999999999999875 444
Q ss_pred CCcceeeccCcccc
Q 014217 86 SSPLQVKYADGELE 99 (428)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (428)
+.|.+.++.+...
T Consensus 82 -~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 -NKVTLDWAKPKGE 94 (102)
T ss_dssp -EECEEEECCCCCS
T ss_pred -eEEEEEEecCCCC
Confidence 7889988875443
No 317
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-15 Score=115.58 Aligned_cols=79 Identities=22% Similarity=0.512 Sum_probs=68.9
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
..+...++|||+|||+++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..+ .| +.
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~ 92 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF-QG--RN 92 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE-TT--EE
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE-CC--eE
Confidence 345567999999999999999999999999999999987 3568999999999999999999998754 44 78
Q ss_pred ceeeccCc
Q 014217 89 LQVKYADG 96 (428)
Q Consensus 89 ~~~~~~~~ 96 (428)
|++.|+++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 88888753
No 318
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=113.15 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=69.2
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+....++|||+|||+++|+++|+++|+.||.|. +.++.+ +++|||||+|.+.++|++|++.||+..+ .| +.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 85 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL-GT--DT 85 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS-SS--SC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE-CC--cE
Confidence 3455689999999999999999999999999987 666643 5788999999999999999999999764 44 78
Q ss_pred ceeeccCcc
Q 014217 89 LQVKYADGE 97 (428)
Q Consensus 89 ~~~~~~~~~ 97 (428)
|.+.++.+.
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 888887654
No 319
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-16 Score=121.89 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=71.2
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|++|++.||+..+ .| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l 97 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL-YG--KIL 97 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC-SS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEE
Confidence 445679999999999999999999999999984443333323788999999999999999999999998764 44 889
Q ss_pred eeeccCcccc
Q 014217 90 QVKYADGELE 99 (428)
Q Consensus 90 ~~~~~~~~~~ 99 (428)
.+.++.....
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9988865443
No 320
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=121.15 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=67.3
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCce----eEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALV----DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
..+.++|||+|||+++|++||+++|+.||.| ..|+|+.+. +|+++|||||+|.+.++|++||+. |+ ..+.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~-~~l~g-- 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK-DLLGK-- 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT-EESSS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC-CeeCC--
Confidence 4567899999999999999999999999875 689999985 799999999999999999999986 55 44555
Q ss_pred Ccceeecc
Q 014217 87 SPLQVKYA 94 (428)
Q Consensus 87 ~~~~~~~~ 94 (428)
+.|.+..+
T Consensus 95 R~i~V~~a 102 (123)
T 2dha_A 95 RYIELFRS 102 (123)
T ss_dssp CEECCEEE
T ss_pred eEEEEEEC
Confidence 55655544
No 321
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=115.93 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=69.7
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC--CCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP--GAS 86 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~--~~~ 86 (428)
......++|||+|||+++|+++|+++|+.||.|..|+++.+ |||||+|.+.++|++||+.||+..+.. ...
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34566899999999999999999999999999999999887 699999999999999999999876422 112
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|++.++.+.
T Consensus 83 ~~i~V~~a~~~ 93 (108)
T 1x4c_A 83 AYIRVKVDGPR 93 (108)
T ss_dssp EEEEEEESSCC
T ss_pred eEEEEEeCCCC
Confidence 77888887654
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=5.6e-17 Score=126.84 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=77.1
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
.+..+.++|||+|||+++|+++|+++|+.||.|.. |+++.++.+++++|||||+|.+.++|++|++.||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999999 8999998889999999999999999999999999875
Q ss_pred CCCCCCCcceeeccCccc
Q 014217 81 TLPGASSPLQVKYADGEL 98 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (428)
+ .| +.|++.++.+..
T Consensus 82 ~-~g--~~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 F-SG--NPIKVSFATRRA 96 (116)
Confidence 4 44 788888876543
No 323
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1e-15 Score=117.37 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=68.8
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+...++|||+|||+++|+++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++||+.||+.. +.| +
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~-l~G--r 95 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIE-FRG--S 95 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEE-ETT--E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 3566778999999999999999999999999 899888753 2478999999999999999999999875 444 7
Q ss_pred cceeeccCc
Q 014217 88 PLQVKYADG 96 (428)
Q Consensus 88 ~~~~~~~~~ 96 (428)
.|++.++..
T Consensus 96 ~i~V~~a~~ 104 (111)
T 2jvr_A 96 VITVERDDN 104 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEECCC
Confidence 888888753
No 324
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1e-15 Score=133.07 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 014217 339 GPPGANLFIYHIPQEF---------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 409 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l 409 (428)
....++|||+||+.++ ++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467999999999998 79999999999999999999854 59999999999999999999999999
Q ss_pred ------------CCeEEEEEEecCCcC
Q 014217 410 ------------GGKKLKVQLKRDNKQ 424 (428)
Q Consensus 410 ------------~g~~i~v~~a~~~~~ 424 (428)
.|+.|.|.||+..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999997654
No 325
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.6e-15 Score=115.35 Aligned_cols=80 Identities=29% Similarity=0.478 Sum_probs=69.2
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.......++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..+ .| +
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~-~g--~ 93 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF-AN--Q 93 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--E
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--e
Confidence 4456778999999999999999999999999999999987 57999999999999999999999764 44 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|.+.++....
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 89998886543
No 326
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=116.12 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=67.9
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
...+.++|||+|||+++|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|++|++.||+..+ .| +.|
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l 76 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF-HH--VPL 76 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS-SS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE-CC--eEE
Confidence 345678999999999999999999999999999998764 457999999999999999999998764 44 788
Q ss_pred eeeccCc
Q 014217 90 QVKYADG 96 (428)
Q Consensus 90 ~~~~~~~ 96 (428)
.+.|+..
T Consensus 77 ~V~~a~~ 83 (111)
T 1whx_A 77 YLEWAPI 83 (111)
T ss_dssp EEEEEET
T ss_pred EEEECCC
Confidence 8888753
No 327
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=115.08 Aligned_cols=81 Identities=16% Similarity=0.384 Sum_probs=71.6
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.+....++|||+|||+++|+++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.||+.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 90 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTT-IEG--HV 90 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--cE
Confidence 35667899999999999999999999999999999999887 5799999999999999999999875 444 88
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|++.|+....
T Consensus 91 l~v~~a~~~~ 100 (109)
T 1x4g_A 91 VKCYWGKESP 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999887543
No 328
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=6.5e-16 Score=123.52 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=67.8
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|++||+++|+.|| |.+|+|+.|+. ++++|||||+|.+.++|++|| .+|+. .+.+ +.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~g--R~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA-NMQH--RYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC-SSSS--CCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC-EECC--EEE
Confidence 455678999999999999999999999999 66999999986 999999999999999999999 66664 4555 667
Q ss_pred eeeccCc
Q 014217 90 QVKYADG 96 (428)
Q Consensus 90 ~~~~~~~ 96 (428)
++..+..
T Consensus 116 ~V~~a~~ 122 (139)
T 2hgn_A 116 ELFLNST 122 (139)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 7666543
No 329
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.2e-16 Score=120.74 Aligned_cols=67 Identities=22% Similarity=0.462 Sum_probs=61.7
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCC---CCccceEEEEeCCHHHHHHHHHHhc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
.....++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 345689999999999999999999999999999 888888777 7999999999999999999999984
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=5.1e-15 Score=124.19 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=75.5
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+.+|+++|+++|+.||.|.+|.++.+. +++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999875 444 888
Q ss_pred eeeccCcc
Q 014217 90 QVKYADGE 97 (428)
Q Consensus 90 ~~~~~~~~ 97 (428)
.+.++...
T Consensus 160 ~V~~a~~~ 167 (177)
T 2f3j_A 160 DIQLVASQ 167 (177)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 88887644
No 331
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=5.3e-15 Score=111.30 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=67.0
Q ss_pred ccccccCceEEEeCCCC-CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.......++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+.. +.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~-~~g-- 84 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEM-NFG-- 84 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSE-ETT--
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 44667889999999998 99999999999999999999883 5799999999999999999999875 444
Q ss_pred CcceeeccCc
Q 014217 87 SPLQVKYADG 96 (428)
Q Consensus 87 ~~~~~~~~~~ 96 (428)
+.|++.+++.
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 7888888764
No 332
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.2e-15 Score=115.20 Aligned_cols=83 Identities=17% Similarity=0.370 Sum_probs=71.6
Q ss_pred ccccCceEEEeCCCCCCCHHHHH----HHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
+....++|||+|||+++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|..|++.||+..+ .|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g- 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD- 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE-TT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-CC-
Confidence 34678999999999999999999 9999999999998874 467889999999999999999999999764 44
Q ss_pred CCcceeeccCccc
Q 014217 86 SSPLQVKYADGEL 98 (428)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (428)
+.|.+.++.+..
T Consensus 79 -~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 -KPMRIQYAKTDS 90 (97)
T ss_dssp -EECEEEECSSCC
T ss_pred -cEEEEEEccCCC
Confidence 889998887543
No 333
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.1e-15 Score=111.34 Aligned_cols=78 Identities=17% Similarity=0.381 Sum_probs=65.5
Q ss_pred cccccCceEEEeCCCC-CCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
.+..+.++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+ .| +
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 73 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN-FG--K 73 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC-BT--T
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee-CC--c
Confidence 3566789999999998 99999999999999999999884 57999999999999999999998764 44 7
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|.+.++...
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 7787777543
No 334
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=110.19 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=69.8
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|++|++.||+..+ .| +
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 71 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV-KG--K 71 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE-CC--c
Confidence 34567889999999999999999999999999999999873 3999999999999999999998754 44 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|++.++.+..
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 88888886543
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=115.05 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=70.8
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
........++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.||+.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 80 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG-- 80 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT--
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 45566778999999999999999999999999988755 3368899999999999999999999998865 444
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|.+.++.+.
T Consensus 81 ~~l~v~~a~~~ 91 (96)
T 1fjc_A 81 RSVSLYYTGEK 91 (96)
T ss_dssp EEEEEEECSSS
T ss_pred eEEEEEEcCCC
Confidence 78888887644
No 336
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=1.4e-15 Score=115.99 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=69.3
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++ ++. .+.| +.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~-~~~g--~~l 78 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQI-NFHG--KKL 78 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCC-EETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCC-eECC--EEE
Confidence 44567999999999999999999999999999999999998 89999999999999999999998 443 3444 666
Q ss_pred eeeccC
Q 014217 90 QVKYAD 95 (428)
Q Consensus 90 ~~~~~~ 95 (428)
.+.++.
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 666553
No 337
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=6.8e-16 Score=117.34 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=62.1
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q 014217 347 IYHIPQEFGDQELGNAF------------QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 414 (428)
Q Consensus 347 V~nLp~~~t~~~L~~~F------------~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i 414 (428)
+.||+..+++++|+++| ++||.|.+|+|++++ +++++|||||+|.+.++|.+|+..|||+.|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34455556666666555 999999999999886 58999999999999999999999999999999999
Q ss_pred EEEEe
Q 014217 415 KVQLK 419 (428)
Q Consensus 415 ~v~~a 419 (428)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 338
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=111.49 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=72.2
Q ss_pred cccccccccccCceEEEeCCCCCCCHHHHHHHHhhc--CceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 3 ESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 3 ~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
....++......++|||+|||+++|+++|+++|+.| |.|..|++. +|||||+|.+.++|++|++.||+..
T Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 4 GSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp CCCCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred cccccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 344556677788999999999999999999999999 899988764 4699999999999999999999876
Q ss_pred CCCCCCCcceeeccCccc
Q 014217 81 TLPGASSPLQVKYADGEL 98 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (428)
+ .| +.|.+.++.+..
T Consensus 76 ~-~g--~~l~v~~a~~~~ 90 (99)
T 2cpd_A 76 L-DG--SPIEVTLAKPVD 90 (99)
T ss_dssp E-TT--EEEEEECCCCCC
T ss_pred e-CC--cEEEEEECCCCC
Confidence 4 44 889998887543
No 339
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=8.8e-15 Score=118.85 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=70.8
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
+....+|||+||++++|+++|+++|++||.|.+|+++.+. ++|||||+|.+.++|++|++.||+..+.+ ..+.|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEE
Confidence 4455779999999999999999999999999999987543 56899999999999999999999987653 358899
Q ss_pred eeccCcc
Q 014217 91 VKYADGE 97 (428)
Q Consensus 91 ~~~~~~~ 97 (428)
+.|++..
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9988754
No 340
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=6.8e-16 Score=147.97 Aligned_cols=151 Identities=18% Similarity=0.318 Sum_probs=102.0
Q ss_pred HHHHHhhcCceeEEEEEeC----C-CCCCccceE--EEEeCCHHHHHHHHHHhcCCCCCCC------------CCCccee
Q 014217 31 LLAMFKEFALVDEVNIIKD----K-TTRASRGCC--FVICPSRQEADKAVNACHNKKTLPG------------ASSPLQV 91 (428)
Q Consensus 31 l~~~f~~~g~i~~~~~~~~----~-~~~~~~g~a--fV~f~~~~~a~~al~~l~~~~~~~~------------~~~~~~~ 91 (428)
|..+|..+++|..|..+.. + .+....|++ |+.|.+..++..++..++....... ....+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999987743332 1 112223333 8888776655444322211100000 0000110
Q ss_pred ecc---CcccccccceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCc
Q 014217 92 KYA---DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (428)
Q Consensus 92 ~~~---~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~e~a~~a~~~l~~~~ 167 (428)
..+ ........++|||+|||..+|+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||+.||+..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 000 00111225799999999999999999999999999999998875 78899999999999999999999999987
Q ss_pred cCCCCcceEEEEeCCCH
Q 014217 168 KMEGSSVPLVVKWADTE 184 (428)
Q Consensus 168 ~~~g~~~~l~v~~a~~~ 184 (428)
|.|.. |.|.++...
T Consensus 169 -i~gr~--i~V~~a~~~ 182 (437)
T 3pgw_S 169 -IDGRR--VLVDVERGR 182 (437)
T ss_pred -ECCEE--EEEEEeCCC
Confidence 77775 888888653
No 341
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.1e-15 Score=115.35 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=65.9
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCC----HHH----HHHHHH--HhcCCC
Q 014217 15 VKLFVGQV----PKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS----RQE----ADKAVN--ACHNKK 80 (428)
Q Consensus 15 ~~l~v~nL----p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~----~~~----a~~al~--~l~~~~ 80 (428)
.+|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 444 788888 566654
Q ss_pred CCCCCCCcceeeccC
Q 014217 81 TLPGASSPLQVKYAD 95 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (428)
+.| +.++|....
T Consensus 83 -I~G--r~irV~ln~ 94 (136)
T 2j8a_A 83 -IMG--FKFEVILNK 94 (136)
T ss_dssp -ETT--EEEEEEECC
T ss_pred -ecC--cEEEEEECc
Confidence 444 777776554
No 342
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=109.74 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=69.7
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
..+....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.||+..+ .| +
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 72 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF-QG--K 72 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee-CC--c
Confidence 34567789999999999999999999999999999999873 3999999999999999999998764 44 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
.|++.++.+..
T Consensus 73 ~l~V~~a~~~~ 83 (92)
T 2dgt_A 73 RMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 89998886543
No 343
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=107.75 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCceEEEeCCC-------CCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q 014217 341 PGANLFIYHIP-------QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 413 (428)
Q Consensus 341 ~~~~l~V~nLp-------~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~ 413 (428)
....|.|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|..|+..+++ +.|++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 35677777664 458999999999999999999997 35789999999999999999998554 68999
Q ss_pred EEEEEecCCcCCC
Q 014217 414 LKVQLKRDNKQNK 426 (428)
Q Consensus 414 i~v~~a~~~~~~~ 426 (428)
|+|+|++.++..+
T Consensus 82 l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 82 LKISWLEGQPQDA 94 (100)
T ss_dssp CEEECSSCCCCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999999887654
No 344
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=109.81 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=70.3
Q ss_pred cccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEE-EEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN-IIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
......++|||+|||+++|+++|+++|+.||.|.+|+ ++.++.++ .|||+|.+.++|.+|++.||+..+ .| +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~-~g--~ 82 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL-EN--F 82 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC-SS--C
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE-CC--c
Confidence 3445679999999999999999999999999999994 88776554 499999999999999999999764 44 8
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.|++.++.+.
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 8999888754
No 345
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-15 Score=114.45 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=66.7
Q ss_pred ccccccCceEEE--eCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC--CC
Q 014217 8 KKSSEERVKLFV--GQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT--LP 83 (428)
Q Consensus 8 ~~~~~~~~~l~v--~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~--~~ 83 (428)
+......++||| +||++++|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.||+..+ ..
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 344556789999 77999999999999999999999988753 258999999999999999999999854 12
Q ss_pred CCCCcceeeccC
Q 014217 84 GASSPLQVKYAD 95 (428)
Q Consensus 84 ~~~~~~~~~~~~ 95 (428)
+.++++.+.+..
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 235666666654
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=7.8e-15 Score=113.35 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=67.1
Q ss_pred ccccCceEEEeCCCCC-CCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 10 SSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.....++|||+|||++ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.||+..+ .| +.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~ 91 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL-AG--QT 91 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE-TT--EE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE-CC--eE
Confidence 3445689999999999 999999999999999999988 467999999999999999999998754 44 78
Q ss_pred ceeeccCcc
Q 014217 89 LQVKYADGE 97 (428)
Q Consensus 89 ~~~~~~~~~ 97 (428)
|++.++...
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 888887643
No 347
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=8.4e-15 Score=111.72 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=68.3
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+.. +.+ +.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 75 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKD-LEG--ENI 75 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEE-ETT--EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCc-cCC--CEE
Confidence 44567999999999999999999999999999999886 3499999999999999999999875 444 888
Q ss_pred eeeccCcccc
Q 014217 90 QVKYADGELE 99 (428)
Q Consensus 90 ~~~~~~~~~~ 99 (428)
.+.++.+...
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 8888865433
No 348
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-15 Score=111.02 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=66.8
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~ 88 (428)
.....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+...+.| +.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~ 74 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--KI 74 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC--EE
Confidence 4567799999999999999999999999998 6655552 457999999999999999999998333555 88
Q ss_pred ceeeccCccc
Q 014217 89 LQVKYADGEL 98 (428)
Q Consensus 89 ~~~~~~~~~~ 98 (428)
|++.++.+..
T Consensus 75 l~v~~a~~~~ 84 (93)
T 2cqh_A 75 MEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 8888886543
No 349
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=6.2e-15 Score=108.88 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=61.8
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
........+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++ +++. .+.+.++
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~-~~~~~g~ 74 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE-DLIIKGI 74 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC-EEEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC-CcccCCE
Confidence 345677899999999999999999999999999999999875 67999999999999983 4454 3444568
Q ss_pred cceeeccCcc
Q 014217 88 PLQVKYADGE 97 (428)
Q Consensus 88 ~~~~~~~~~~ 97 (428)
.+.+.++.+.
T Consensus 75 ~v~v~~a~~k 84 (89)
T 3d2w_A 75 SVHISNAEPK 84 (89)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 8888887654
No 350
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=108.61 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=66.0
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~ 89 (428)
.....++|||+|||+++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|++|++ ||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g--~~l 74 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGG--HRL 74 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETT--EEC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECC--EEE
Confidence 45567899999999999999999999999999987 66665665 99999999999999999 98865 444 777
Q ss_pred eeeccCc
Q 014217 90 QVKYADG 96 (428)
Q Consensus 90 ~~~~~~~ 96 (428)
.+.++..
T Consensus 75 ~V~~a~~ 81 (94)
T 2e5g_A 75 RVRPREQ 81 (94)
T ss_dssp CCBCSCC
T ss_pred EEEECCc
Confidence 7777653
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=3.2e-14 Score=110.88 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=66.7
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccce-EEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
.....|||+|||+.+|+++|+++|++||.|.+|+++.. .|| |||+|.+.++|..|++.||+..+.+ ..+.|+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~ 95 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLK 95 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEE
Confidence 34455789999999999999999999999999998763 276 9999999999999999999987644 346788
Q ss_pred eeccCcc
Q 014217 91 VKYADGE 97 (428)
Q Consensus 91 ~~~~~~~ 97 (428)
+.+++..
T Consensus 96 V~~Ak~~ 102 (124)
T 2e5i_A 96 IEYARPT 102 (124)
T ss_dssp EECCSCS
T ss_pred EEEecCC
Confidence 8887643
No 352
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-14 Score=102.63 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=61.7
Q ss_pred cCceEEEeCCCCCCCHHH----HHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 014217 13 ERVKLFVGQVPKHMTEAQ----LLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~ 87 (428)
....|||+|||+++++++ |+++|++|| .|.+| ++ |+|||+|.+.++|++|++.|++..++ | +
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~-g--r 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF-G--N 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS-S--S
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC-C--c
Confidence 334499999999999998 558999995 99887 34 89999999999999999999998754 3 8
Q ss_pred cceeeccCccc
Q 014217 88 PLQVKYADGEL 98 (428)
Q Consensus 88 ~~~~~~~~~~~ 98 (428)
++++.+++...
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99998886543
No 353
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=108.16 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=71.5
Q ss_pred ccccccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
+..........++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..+ .
T Consensus 5 s~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~ 75 (97)
T 1x5p_A 5 SSGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-E 75 (97)
T ss_dssp CSSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE-T
T ss_pred CCCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE-C
Confidence 4455666778899999996 99999999999999999999884 4668999999999999999999998754 4
Q ss_pred CCCCcceeeccCccc
Q 014217 84 GASSPLQVKYADGEL 98 (428)
Q Consensus 84 ~~~~~~~~~~~~~~~ 98 (428)
| +.|.+.|+.+..
T Consensus 76 g--~~l~v~~a~~~~ 88 (97)
T 1x5p_A 76 S--VQLKVNIARKQP 88 (97)
T ss_dssp T--EEEEEECCSSCC
T ss_pred C--eEEEEEECCCCC
Confidence 4 889998886543
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=1.8e-14 Score=112.64 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=70.0
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccce-EEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
...+..-..|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|++|++.||+..+.+ ..
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~ 95 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN-AC 95 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET-TE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC-CC
Confidence 3445566788899999999999999999999999999988643 467 9999999999999999999988655 35
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|++.+++..
T Consensus 96 ~~LrI~~ak~~ 106 (130)
T 3zzy_A 96 CTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecCCC
Confidence 68888888643
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=2e-14 Score=111.75 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=57.8
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
...++|||+|||+++|+++|+++|+.||.|.+|.++.+ |||||+|.+.++|++||+.||+..+ .|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~-~g 78 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF-RS 78 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC-CC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE-CC
Confidence 46799999999999999999999999999999999776 7999999999999999999998764 44
No 356
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=2.9e-15 Score=121.69 Aligned_cols=85 Identities=22% Similarity=0.392 Sum_probs=69.9
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEE--E---EeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN--I---IKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~--~---~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
.....++|||+|||+++|+++|+++|+.||.|..+. + ++...+++++|||||+|.+.++|.+|++.||+..+ .|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL-FG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-TT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-CC
Confidence 456778999999999999999999999999887641 1 11123688999999999999999999999998764 44
Q ss_pred CCCcceeeccCcc
Q 014217 85 ASSPLQVKYADGE 97 (428)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (428)
+.|.+.++...
T Consensus 120 --~~l~V~~a~~~ 130 (143)
T 3egn_A 120 --KPMVVQFARSA 130 (143)
T ss_dssp --EECEEEECCCS
T ss_pred --cEEEEEECCCC
Confidence 88888888653
No 357
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.1e-14 Score=107.59 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=65.9
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
...++|||+|||+++|+++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..+ .| +.+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF-RG--KDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE-TT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE-CC--cEEEE
Confidence 467899999999999999999999999 89999884 5789999999999999999999998764 44 78888
Q ss_pred eccC
Q 014217 92 KYAD 95 (428)
Q Consensus 92 ~~~~ 95 (428)
.++.
T Consensus 73 ~~a~ 76 (88)
T 1wg1_A 73 QLQP 76 (88)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8875
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=1.9e-14 Score=122.57 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=71.9
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcce
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~ 90 (428)
....++|||+|||+++|+++|+++|+.||.|.+|++.++. +++++|||||+|.+.++|.+|++.++. .+.| +.|.
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~--~~~G--r~l~ 180 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ--KYKE--TDLL 180 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC--EETT--EECE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC--eECC--EEEE
Confidence 3456899999999999999999999999999999999987 489999999999999999999987653 4555 8888
Q ss_pred eeccCcc
Q 014217 91 VKYADGE 97 (428)
Q Consensus 91 ~~~~~~~ 97 (428)
+.|....
T Consensus 181 V~~~~~y 187 (193)
T 2voo_A 181 ILFKDDY 187 (193)
T ss_dssp EEETTTC
T ss_pred EEEhHHH
Confidence 8887654
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=4e-14 Score=104.39 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=62.8
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~ 79 (428)
....++|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 8 8999988755 579999999999999999 99887
Q ss_pred CCCCCCCCcceeec
Q 014217 80 KTLPGASSPLQVKY 93 (428)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (428)
. +.| +.+++..
T Consensus 76 ~-~~g--~~l~V~r 86 (87)
T 2hzc_A 76 I-FQG--QSLKIRR 86 (87)
T ss_dssp E-ETT--EECEEEC
T ss_pred E-ECC--eEEEEeC
Confidence 5 444 6666653
No 360
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=6.8e-14 Score=107.58 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCceEEEeCC--CCCC--------CHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 014217 341 PGANLFIYHI--PQEF--------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 410 (428)
Q Consensus 341 ~~~~l~V~nL--p~~~--------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~ 410 (428)
++++|.|+|| +.+. .++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||++|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5689999999 2221 256899999999999999986542 4899999999999999999999999999
Q ss_pred CeEEEEEEecC
Q 014217 411 GKKLKVQLKRD 421 (428)
Q Consensus 411 g~~i~v~~a~~ 421 (428)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1.1e-13 Score=108.33 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=67.4
Q ss_pred cccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
+...+...++|||+|| ++|+++|+++|+.||.|.+|.+. +++|||||+|.+.++|.+|++.||+..+ .|
T Consensus 32 ~~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g-- 100 (121)
T 2bz2_A 32 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-ES-- 100 (121)
T ss_dssp ---CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC-SS--
T ss_pred CCCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE-CC--
Confidence 3445667899999996 79999999999999999999985 4668999999999999999999998764 44
Q ss_pred CcceeeccCcc
Q 014217 87 SPLQVKYADGE 97 (428)
Q Consensus 87 ~~~~~~~~~~~ 97 (428)
+.|.+.|+...
T Consensus 101 ~~l~V~~a~~~ 111 (121)
T 2bz2_A 101 VQLKVNIARKQ 111 (121)
T ss_dssp CBCEEEECCSS
T ss_pred eEEEEEEeCCC
Confidence 88888888654
No 362
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.6e-13 Score=104.25 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=71.1
Q ss_pred cccCceEEEeCCCC-----CCCHHHHHHHHhhcCceeEEEEEeCCCC-CCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 11 SEERVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 11 ~~~~~~l~v~nLp~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
...+++|+|+||.. +-++++|++.|++||.|.+|++++++.+ ++++|||||+|.+.++|.+|++.||+..+ .|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-GG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-TT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-CC
Confidence 46789999999973 2378999999999999999999998654 68999999999999999999999999864 44
Q ss_pred CCCcceeeccCc
Q 014217 85 ASSPLQVKYADG 96 (428)
Q Consensus 85 ~~~~~~~~~~~~ 96 (428)
+.|.+.++..
T Consensus 84 --r~i~v~~a~~ 93 (105)
T 2pe8_A 84 --RVVKACFYNL 93 (105)
T ss_dssp --EECEEEECCH
T ss_pred --cEEEEEEcCH
Confidence 8888887754
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.1e-14 Score=104.49 Aligned_cols=77 Identities=25% Similarity=0.291 Sum_probs=63.2
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccee
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~ 91 (428)
...++|||+|||+++|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|+++ ++. .+...++.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~-~~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGE-DLIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTC-EEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcC-CceeCCEEEEE
Confidence 45799999999999999999999999999999998765 678999999999999754 333 23334588888
Q ss_pred eccCccc
Q 014217 92 KYADGEL 98 (428)
Q Consensus 92 ~~~~~~~ 98 (428)
.++.+..
T Consensus 73 ~~a~~~~ 79 (88)
T 1wf0_A 73 SNAEPKH 79 (88)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 8876543
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=3.4e-13 Score=117.21 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=69.5
Q ss_pred ccccCceEEEeCCCCCC---------CHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 014217 10 SSEERVKLFVGQVPKHM---------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~ 80 (428)
.....++|||+|||..+ +|++|+++|+.||.|.+|+++.+ +|||||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34567999999999998 79999999999999999999854 5899999999999999999999987
Q ss_pred CCC---------CCCCcceeeccCccc
Q 014217 81 TLP---------GASSPLQVKYADGEL 98 (428)
Q Consensus 81 ~~~---------~~~~~~~~~~~~~~~ 98 (428)
++. +.++.|.|.|+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 631 134889999987543
No 365
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=92.98 Aligned_cols=76 Identities=28% Similarity=0.484 Sum_probs=65.7
Q ss_pred CCCCCceEEEeCCC----CCCCH----HHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 014217 338 TGPPGANLFIYHIP----QEFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 409 (428)
Q Consensus 338 ~~~~~~~l~V~nLp----~~~t~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l 409 (428)
.+++..||+|.-.+ .++-. .+|.+.|+.||.|..++|+.++ +||+|.+.++|.+|+. |||..+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 35577889988876 24434 6899999999999999998775 8999999999999998 999999
Q ss_pred CCeEEEEEEecCC
Q 014217 410 GGKKLKVQLKRDN 422 (428)
Q Consensus 410 ~g~~i~v~~a~~~ 422 (428)
+||.|+|+++.+.
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999998854
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=7.5e-13 Score=121.42 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCCCceEEEeC--CCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee---CCe-
Q 014217 339 GPPGANLFIYH--IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGK- 412 (428)
Q Consensus 339 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l---~g~- 412 (428)
..+..+|||+| |++++|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45679999999 578999999999999999999987753 369999999999999999999999998 245
Q ss_pred -EEEEEEec
Q 014217 413 -KLKVQLKR 420 (428)
Q Consensus 413 -~i~v~~a~ 420 (428)
.|.|.|++
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888874
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.2e-12 Score=98.13 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=68.6
Q ss_pred cccccccCceEEEeCCCCCCC-----------HHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHH
Q 014217 7 EKKSSEERVKLFVGQVPKHMT-----------EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (428)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 75 (428)
....+..+++|+|+||....+ +++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|.+|++.
T Consensus 8 ~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 8 GPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHH
Confidence 345778899999999954433 6899999999999999955 554 3789999999999999999999
Q ss_pred hcCCCCCCCCCCcceeeccCc
Q 014217 76 CHNKKTLPGASSPLQVKYADG 96 (428)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~ 96 (428)
||+..+ .| +.|.+.++.+
T Consensus 84 lng~~~-~g--r~l~v~~a~~ 101 (112)
T 2dit_A 84 LDGRWF-GG--RQITAQAWDG 101 (112)
T ss_dssp STTCEE-TT--EECEEEECCS
T ss_pred cCCCEE-CC--cEEEEEEeCC
Confidence 999764 44 8888888754
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=3.9e-12 Score=96.63 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=68.4
Q ss_pred ccCceEEEeCC--CCCCC--------HHHHHHHHhhcCceeEEEEEeCCCC--CCccceEEEEeCCHHHHHHHHHHhcCC
Q 014217 12 EERVKLFVGQV--PKHMT--------EAQLLAMFKEFALVDEVNIIKDKTT--RASRGCCFVICPSRQEADKAVNACHNK 79 (428)
Q Consensus 12 ~~~~~l~v~nL--p~~~t--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~~~ 79 (428)
.+++.|.|.|+ |.... ++||++.|++||.|.+|+++++..+ ++++|+|||+|.+.++|.+|++.||++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 43443 4789999999999999999988754 468999999999999999999999998
Q ss_pred CCCCCCCCcceeeccCc
Q 014217 80 KTLPGASSPLQVKYADG 96 (428)
Q Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (428)
. +.| +.|.+.+...
T Consensus 83 ~-f~G--R~i~v~~~~~ 96 (105)
T 3v4m_A 83 K-FAN--RVVVTKYCDP 96 (105)
T ss_dssp E-ETT--EECEEEEECH
T ss_pred E-eCC--CEEEEEEeCH
Confidence 6 454 8888877653
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1.4e-12 Score=98.99 Aligned_cols=72 Identities=17% Similarity=0.364 Sum_probs=60.6
Q ss_pred EeCCCCCCCHHHHHHHH------------hhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 19 VGQVPKHMTEAQLLAMF------------KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 19 v~nLp~~~t~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
+.|||+.+++++|++.| ++||.|.+|+++++.. ++++|||||+|.+.++|.+|++.||+.. +.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~G-- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRW-FNG-- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCE-ETT--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCE-ECC--
Confidence 56788888888777666 9999999999998874 7899999999999999999999999975 444
Q ss_pred Ccceeecc
Q 014217 87 SPLQVKYA 94 (428)
Q Consensus 87 ~~~~~~~~ 94 (428)
+.|.+.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 77777654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=8.7e-12 Score=114.37 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=65.6
Q ss_pred ccccccCceEEEeC--CCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 8 KKSSEERVKLFVGQ--VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 8 ~~~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
+....++++|||+| |++.+||++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.||+..++...
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 44577889999999 689999999999999999999887643 4689999999999999999999998775332
Q ss_pred CC--cceeecc
Q 014217 86 SS--PLQVKYA 94 (428)
Q Consensus 86 ~~--~~~~~~~ 94 (428)
++ .+.+.+.
T Consensus 86 g~~~~ly~~~~ 96 (345)
T 3tht_A 86 GQKITLYLNFV 96 (345)
T ss_dssp SCEEECEEEEC
T ss_pred CCceEEEEEEe
Confidence 23 3444443
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.1e-11 Score=89.11 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=62.4
Q ss_pred ccCceEEEeCCC-------CCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 12 EERVKLFVGQVP-------KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 12 ~~~~~l~v~nLp-------~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
....+|.|.-.. .++|+++|+++|++||.|.+|+++ ++++|||||+|.+.++|..|++.+++ +
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~-- 77 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---L-- 77 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---C--
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---C--
Confidence 345677776655 458999999999999999999987 36789999999999999999998544 2
Q ss_pred CCCcceeeccCccc
Q 014217 85 ASSPLQVKYADGEL 98 (428)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (428)
..+.|++.|+....
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 34889999886543
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=9.5e-12 Score=96.26 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=68.3
Q ss_pred ccCceEEEeCCCC--C---CCHHHHHHHHhhcCceeEEEEEeCCC----CCCccceEEEEeCCHHHHHHHHHHhcCCCCC
Q 014217 12 EERVKLFVGQVPK--H---MTEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (428)
Q Consensus 12 ~~~~~l~v~nLp~--~---~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afV~f~~~~~a~~al~~l~~~~~~ 82 (428)
.++++|+|+|+-. + -.++||++.|++||.|.+|+|+++.. +++++|++||+|.+.++|.+|++.||++. +
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-F 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-E
Confidence 4789999999942 2 24789999999999999999999864 35678999999999999999999999986 4
Q ss_pred CCCCCcceeeccC
Q 014217 83 PGASSPLQVKYAD 95 (428)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (428)
.| +.|.+.+..
T Consensus 97 ~G--R~i~v~~~~ 107 (118)
T 3ue2_A 97 AG--RKVVAEVYD 107 (118)
T ss_dssp TT--EECEEEEEC
T ss_pred CC--cEEEEEEcC
Confidence 55 888887764
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.9e-11 Score=93.80 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecC-HHHHHHHHHHhc--CceeCCeEE
Q 014217 339 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES-PASAQNAIAMMN--GCQLGGKKL 414 (428)
Q Consensus 339 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~-~e~A~~A~~~l~--g~~l~g~~i 414 (428)
-.+++.|+|+||+.+ ++.++|+++|+.||.|.+|.+..+.. .|||+|.+ +++|..|+..|+ |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999988763 49999999 899999999994 778899888
Q ss_pred EEEEec
Q 014217 415 KVQLKR 420 (428)
Q Consensus 415 ~v~~a~ 420 (428)
++++-.
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887643
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.5e-11 Score=86.46 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=64.9
Q ss_pred CCCCCCceEEEeCCCCC-----CCH----HHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc
Q 014217 337 GTGPPGANLFIYHIPQE-----FGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 407 (428)
Q Consensus 337 ~~~~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~ 407 (428)
..+++..||+|.-++.+ +-. .+|.+.|+.||.|..++|..++ +||+|.+.++|.+|+. |||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 35668899999988743 333 5799999999999999998774 9999999999999998 9999
Q ss_pred eeCCeEEEEEEec
Q 014217 408 QLGGKKLKVQLKR 420 (428)
Q Consensus 408 ~l~g~~i~v~~a~ 420 (428)
.++||.|+|.+..
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998754
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.17 E-value=1.2e-10 Score=101.86 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=67.6
Q ss_pred CceEEEeCCC-----CCCCHHHHHHHhhcCCCeEEEEEEeeCC----CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCe
Q 014217 342 GANLFIYHIP-----QEFGDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 412 (428)
Q Consensus 342 ~~~l~V~nLp-----~~~t~~~L~~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~ 412 (428)
...+.+.|+- .+-.+++|++.|++||.|.++.|+.+.. +++++|++||+|.+.++|.+|++.|||++|+||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3566677762 2345789999999999999999986653 448999999999999999999999999999999
Q ss_pred EEEEEEec
Q 014217 413 KLKVQLKR 420 (428)
Q Consensus 413 ~i~v~~a~ 420 (428)
.|++.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999875
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.2e-09 Score=83.75 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=59.5
Q ss_pred ccccccCceEEEeCCCCC-CCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCC-HHHHHHHHHHhcCC
Q 014217 8 KKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS-RQEADKAVNACHNK 79 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~-~~~a~~al~~l~~~ 79 (428)
+-.-...+.|||+||+++ +++++|+++|+.||.|..|.+.++.. .|||+|.+ ..+|..|++.++..
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcC
Confidence 445677899999999999 99999999999999999999988875 69999999 89999999998643
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=1.2e-09 Score=83.82 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=64.1
Q ss_pred cceEEEecCCCCC----------CHHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCC
Q 014217 102 EHKLFIGMLPKNV----------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (428)
Q Consensus 102 ~~~v~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g 171 (428)
+++|.|.|+=... .+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||.. ++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~-f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW-FAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE-ETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 5688888884321 235789999999999999997653 48999999999999999999999987 888
Q ss_pred CcceEEEEeCCCHH
Q 014217 172 SSVPLVVKWADTEK 185 (428)
Q Consensus 172 ~~~~l~v~~a~~~~ 185 (428)
+. |.+.++....
T Consensus 83 R~--i~v~~~~~~~ 94 (114)
T 3s6e_A 83 KM--ITAAYVPLPT 94 (114)
T ss_dssp EE--CEEEEECHHH
T ss_pred EE--EEEEEEcHHH
Confidence 86 8888886543
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.1e-08 Score=74.82 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcC-----CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAF-----GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
..++|-+-|||+.+++..|+.+...| |.|.++.+..|. |=|+|+|.+...|.+|...|+|..|+||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46999999999999999999999999 999999998885 3499999999999999999999999999999
Q ss_pred EE
Q 014217 416 VQ 417 (428)
Q Consensus 416 v~ 417 (428)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=5.6e-08 Score=69.53 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=59.5
Q ss_pred ccCceEEEeCCC----CCCCH----HHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 12 EERVKLFVGQVP----KHMTE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 12 ~~~~~l~v~nLp----~~~t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
+...+|+|.-+| .++-. .+|.+.|+.||.|..++++.++ +||+|.+.++|.+|++ ||+.. +.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~-v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKE-LL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCE-ET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeE-eC
Confidence 456788888877 23433 6689999999999999998874 8999999999999998 99986 55
Q ss_pred CCCCcceeeccCcc
Q 014217 84 GASSPLQVKYADGE 97 (428)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (428)
| +.|++..+.+.
T Consensus 75 G--r~LkV~lkt~d 86 (91)
T 2dnr_A 75 N--RTITIALKSPS 86 (91)
T ss_dssp T--EEEEEEECCCS
T ss_pred C--eEEEEEeCCCC
Confidence 5 78888776543
No 380
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=2.4e-07 Score=67.74 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCceEEEeCCCCCC-C----HHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 341 PGANLFIYHIPQEF-G----DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 341 ~~~~l~V~nLp~~~-t----~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
-+++|+|.||+.++ . ++.++++|..|+++......+.- .-..|.|.++++|.+|...||+..|.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35899999998876 2 36889999999999988777664 2478999999999999999999999999999
Q ss_pred EEEecCCcCC
Q 014217 416 VQLKRDNKQN 425 (428)
Q Consensus 416 v~~a~~~~~~ 425 (428)
|-|++.-...
T Consensus 78 ~YFgq~~~~~ 87 (104)
T 1wey_A 78 LYFAQTLHIG 87 (104)
T ss_dssp EECCCCSSCC
T ss_pred EEecCCCCCc
Confidence 9999865433
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=2e-07 Score=81.10 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred CceEEEeCCCC-----CCCHHHHHHHHhhcCceeEEEEEeCCC----CCCccceEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 014217 14 RVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (428)
Q Consensus 14 ~~~l~v~nLp~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~ 84 (428)
...+.+.|+-. .-.+++|++.|++||.|.+++++++.. +++++|++||+|.+.++|.+|++.||++. +.|
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~g 202 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAG 202 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECC
Confidence 34455555432 235788999999999999999986544 45899999999999999999999999985 555
Q ss_pred CCCcceeeccC
Q 014217 85 ASSPLQVKYAD 95 (428)
Q Consensus 85 ~~~~~~~~~~~ 95 (428)
+.|.+.+..
T Consensus 203 --r~i~~~~~~ 211 (222)
T 3dxb_A 203 --RKVVAEVYD 211 (222)
T ss_dssp --SBCEEEECC
T ss_pred --eEEEEEEcC
Confidence 788877764
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.6e-07 Score=67.53 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=58.6
Q ss_pred cccCceEEEeCCCCC-----CCH----HHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCC
Q 014217 11 SEERVKLFVGQVPKH-----MTE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~-----~t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~ 81 (428)
.+...+|+|.-++.+ +-. .+|.+.|+.||.|..++++.++ +||+|.+.++|.+||+ |++..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 356678999888743 322 5588999999999999999885 8999999999999998 998874
Q ss_pred CCCCCCcceeeccC
Q 014217 82 LPGASSPLQVKYAD 95 (428)
Q Consensus 82 ~~~~~~~~~~~~~~ 95 (428)
.| +.+++++..
T Consensus 83 -~G--r~L~V~~k~ 93 (95)
T 1ufw_A 83 -KG--RAVKISGPS 93 (95)
T ss_dssp -TT--EEEEEECCC
T ss_pred -CC--eEEEEeccC
Confidence 44 777776653
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=4.5e-05 Score=55.49 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=68.8
Q ss_pred cccCceEEEeCCCCCCCHHHHHHHHhh---c--CceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 014217 11 SEERVKLFVGQVPKHMTEAQLLAMFKE---F--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (428)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~ 85 (428)
.....+|.|.|||..+.++.|.-+|.. - |.|.++.... +-|+|+|.+.+.|++.|+. ....+.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k--~~H~L~~- 73 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ--ADHELHG- 73 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC--SCCBSSS-
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC--CcceecC-
Confidence 456789999999999999999999987 2 3888877644 2699999999999999876 2333444
Q ss_pred CCcceeeccCcccccccceEEEecCCCCCC
Q 014217 86 SSPLQVKYADGELERLEHKLFIGMLPKNVS 115 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~v~v~nlp~~~t 115 (428)
..+.+... ......++++.+|++.++
T Consensus 74 -~~LsV~P~---~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 -AQLSLRPA---PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp -SBCEEEEC---CCCCCCCCCCCSCCCCCC
T ss_pred -eEEEEEcC---CCCCcceEeeecCCCCCC
Confidence 66666443 334457899999998765
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.97 E-value=3.3e-05 Score=55.41 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=50.6
Q ss_pred ccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 014217 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
.+.-...++| ++|..+...||.++|+.||.|. |+++.|- .|||.|.+.+.|..|++++.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4444556666 9999999999999999999665 8999885 79999999999999999874
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=4.1e-05 Score=56.10 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=64.1
Q ss_pred ccceEEEecCCCCCCHHHHHHhcccc-----CCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Q 014217 101 LEHKLFIGMLPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (428)
Q Consensus 101 ~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~ 175 (428)
..++|-|-|||..++...|+.+.+.+ |.+.++.+..+ .+=|+|+|.+..+|-+|.-.|+|.. |.|+.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e-f~gr~-- 91 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ-FQGKV-- 91 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE-ETTEE--
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee-ecCeE--
Confidence 35789999999999999999999999 99999999887 6689999999999999999999988 77775
Q ss_pred EEEEeC
Q 014217 176 LVVKWA 181 (428)
Q Consensus 176 l~v~~a 181 (428)
|.+...
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 555433
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00012 Score=55.19 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=58.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC-eEEEEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KKLKVQL 418 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g-~~i~v~~ 418 (428)
..+.|.|-|.|... ...+..+|++||+|.+..... ...|..|+|.++.+|++|+.. ||..++| ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 46899999999885 778899999999999887621 236899999999999999997 9999985 6666654
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=7.2e-05 Score=53.85 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=47.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 77 (428)
..++| ++|..+...||.++|+.||.|. |+++.|- .|||.|.+.+.|..|++++.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34556 9999999999999999999554 8999885 79999999999999999874
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.67 E-value=0.00064 Score=48.89 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=62.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCC--CeeeEEEEEecCHHHHHHHHHHhcCceeC---C--eEEE
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATG--VSKCFGFVSYESPASAQNAIAMMNGCQLG---G--KKLK 415 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~F~~~e~A~~A~~~l~g~~l~---g--~~i~ 415 (428)
+.|-|++||++.|++++.+.++.+..+........+... .....|+|.|.+.+++..-.+.++|+.|- | .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578999999999999999999999887777666554322 23456999999999999999999999983 3 3345
Q ss_pred EEEecCC
Q 014217 416 VQLKRDN 422 (428)
Q Consensus 416 v~~a~~~ 422 (428)
|++|-.+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6666443
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00026 Score=50.96 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=58.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCC--ccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.+|.||+||+++||+++.+.++....+.....+..+.+.+ .-.-|||.|.+.+++....+.+++..+.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 5899999999999999999999988777666666443322 33469999999999999999999887765533
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00083 Score=48.85 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=57.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc----C-CCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQA----F-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 415 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~----~-G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~ 415 (428)
-.++|.|.|||++++++.|.-+|+. - |+|.++.... +-|+|+|.+.+.|++.++. .-+.|.|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4589999999999999999999966 2 4788887743 3489999999999999886 35678888888
Q ss_pred EEEec
Q 014217 416 VQLKR 420 (428)
Q Consensus 416 v~~a~ 420 (428)
|.-.-
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 86433
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.00074 Score=48.45 Aligned_cols=54 Identities=30% Similarity=0.452 Sum_probs=43.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 405 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 405 (428)
.+++| ++|.+|...||.++|+.||.|.=-.| -| | -|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-dD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-DD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-ET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE-cC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 55666 99999999999999999995532222 22 2 69999999999999999763
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.16 E-value=0.00086 Score=51.19 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=55.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEE-EEEEeeCC--------CC-----CeeeEEEEEecCHHHHHHHHHHhcC
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKA--------TG-----VSKCFGFVSYESPASAQNAIAMMNG 406 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~--------~~-----~~~g~afV~F~~~e~A~~A~~~l~g 406 (428)
....|.|-|.|++. ...+.++|++||.|.+ .....+.. .. ...+|..|+|.++.+|++|+.. ||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 45778889998766 4557788999999876 22211000 00 1357899999999999999997 99
Q ss_pred ceeCCeEEEEEEe
Q 014217 407 CQLGGKKLKVQLK 419 (428)
Q Consensus 407 ~~l~g~~i~v~~a 419 (428)
..|+|.-|-|..-
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999998877643
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.06 E-value=0.0015 Score=47.13 Aligned_cols=80 Identities=14% Similarity=0.258 Sum_probs=58.0
Q ss_pred ceEEEecCCCCCCHHHHHHhccccCCeEEEEEccCCC--C-CcccEEEEEeCCHHHHHHHHHHHcCCccCCC--CcceEE
Q 014217 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ--Q-TSKGCAFLKYETKEQALAALEAINGKHKMEG--SSVPLV 177 (428)
Q Consensus 103 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--g-~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g--~~~~l~ 177 (428)
-+|.|+.||+..|++++.+.++..-.+........+. + ..-..|||.|.+.++.....+..+|..+.+. ...+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 4688999999999999998888765554333333221 1 1125799999999999999999999876543 444566
Q ss_pred EEeCC
Q 014217 178 VKWAD 182 (428)
Q Consensus 178 v~~a~ 182 (428)
|++|.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77774
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.00093 Score=48.09 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 014217 343 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 405 (428)
Q Consensus 343 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 405 (428)
..++| ++|.+|...||.++|+.||.|. |+=+-| | -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 44555 9999999999999999999332 222222 2 69999999999999999764
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0045 Score=46.59 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=51.1
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCC
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~ 83 (428)
..+..+.+-|.|-|.|+... ..|...|++||.|.+.... . ...+-.|+|.+..+|++||.. +..++.
T Consensus 18 ~~~~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~k--NG~ii~ 84 (119)
T 1wwh_A 18 SEDHLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSK--DGRIFG 84 (119)
T ss_dssp ---CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTT--TTCEET
T ss_pred CCCCCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHh--CCeEec
Confidence 34566788999999999964 6788999999999877651 1 224999999999999999977 444444
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.67 E-value=0.0016 Score=47.03 Aligned_cols=74 Identities=8% Similarity=0.060 Sum_probs=52.5
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCC--ccceEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~ 86 (428)
.+-+|.||.||+.+||+++.+.++.+-.+.....+.-+.+.+ .-.-|||.|.+.+++....+..++..+.+.++
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 467899999999999999888887654443222222221111 22368999999999999999998876665533
No 397
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.0023 Score=46.77 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=59.7
Q ss_pred cceEEEecCCCCC-C----HHHHHHhccccCCeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHHHcCCccCCCCcceE
Q 014217 102 EHKLFIGMLPKNV-S----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (428)
Q Consensus 102 ~~~v~v~nlp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l 176 (428)
.++|+|+||+.++ . .+.++++|+.|+++.....++. -+-.-|.|.+.++|.+|...|++.. +.|+. +
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~-f~g~~--~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTE-FLGKE--M 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSE-ETTEE--C
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccce-ecCce--e
Confidence 4789999998754 2 2678999999998887777654 3467899999999999999999988 77775 7
Q ss_pred EEEeCC
Q 014217 177 VVKWAD 182 (428)
Q Consensus 177 ~v~~a~ 182 (428)
++.++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 888885
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.34 E-value=0.00096 Score=63.31 Aligned_cols=62 Identities=10% Similarity=0.218 Sum_probs=47.4
Q ss_pred ccccccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHH
Q 014217 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (428)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 75 (428)
.+.....++|+|. .|..+++.+|.++|+.||+|.++...+++. -||.|+|.+.+++..+++.
T Consensus 47 ~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 47 ERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred HHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 4456778999997 799999999999999999999988877652 5999999999999977654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.13 E-value=0.0028 Score=60.17 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=43.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 403 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 403 (428)
.++|+|. .+..+++.+|.++|++||.|.++....++ | -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 3899998 69999999999999999999999887664 2 6999999999999977654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.39 E-value=0.042 Score=41.94 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=46.4
Q ss_pred cCceEEEeCCCCCCCHHHHHHHHhhcCceeEEE-EEeC-----------CC-CC-CccceEEEEeCCHHHHHHHHHHhcC
Q 014217 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN-IIKD-----------KT-TR-ASRGCCFVICPSRQEADKAVNACHN 78 (428)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~-~~~~-----------~~-~~-~~~g~afV~f~~~~~a~~al~~l~~ 78 (428)
....|.|-|.|.+.+ ..|.+.|++||.|.+-. ..++ +. .. ....+..|+|.+..+|.+||.. +
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--N 82 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--N 82 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--T
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--C
Confidence 345688889987776 56889999999887621 1110 00 00 1345899999999999999977 4
Q ss_pred CCCCCC
Q 014217 79 KKTLPG 84 (428)
Q Consensus 79 ~~~~~~ 84 (428)
..++.|
T Consensus 83 G~ii~G 88 (132)
T 3p3d_A 83 GAVFNG 88 (132)
T ss_dssp TCEETT
T ss_pred CeEeCc
Confidence 455655
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.56 E-value=0.42 Score=46.31 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=46.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~ 78 (428)
...++|+ +|..+...+|.++|+.||.+ +|+++.+. .|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3466665 99999999999999999955 47766663 799999999999999999853
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=86.90 E-value=5.9 Score=27.47 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=47.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 014217 341 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 404 (428)
Q Consensus 341 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 404 (428)
.+|-|.|-|+|..+-..++--.....|.--.|..+ + |.|+|+|.+.++-+.|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi----d----gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI----D----GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC----S----SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee----c----CeeEEEecCChHHHHHHHHH
Confidence 56999999999999888887777888877777664 2 45999999999999999887
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.03 E-value=1.7 Score=42.03 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=43.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 014217 342 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 405 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 405 (428)
..+++|+ +|..|...+|.+.|+.||.+ +|+-+ +. ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-dd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cC------CeEEEEECCHHHHHHHHHHHH
Confidence 3566666 99999999999999999953 44332 22 369999999999999999884
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=80.41 E-value=7.3 Score=31.19 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=40.4
Q ss_pred CceEEEeCCCC-C--------CCHHHHHHHh--hcCCCeEEEEEEeeCCCCCeeeEEEEEecCHHHHHH
Q 014217 342 GANLFIYHIPQ-E--------FGDQELGNAF--QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 399 (428)
Q Consensus 342 ~~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~ 399 (428)
+-++.|-|+|. . .+..+|++.| +.|.++. |+...++ ..++|+|.|+|.+....-.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~ 77 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLH 77 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHH
Confidence 36788889886 2 3457899977 9998765 5555554 4589999999998775544
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.46 E-value=21 Score=24.73 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=44.9
Q ss_pred ccCceEEEeCCCCCCCHHHHHHHHhhcCceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHh
Q 014217 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (428)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l 76 (428)
...|.|.|-|+|..+-..++.-.....|--..|.. .. |.|.++|.+.++-..|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdy----id----gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY----ID----GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE----CS----SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeee----ec----CeeEEEecCChHHHHHHHHH
Confidence 45688999999999999998888887773322322 22 48999999999999999986
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.44 E-value=49 Score=26.41 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=36.7
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHH--hhcCceeEEEEEeCCCCCCccceEEEEeCCHHHH
Q 014217 16 KLFVGQVPK-H--------MTEAQLLAMF--KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEA 69 (428)
Q Consensus 16 ~l~v~nLp~-~--------~t~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~~~a 69 (428)
++.|-|+|. . ....+|++-| +.|.+++ ++..-.+. .++|++.|+|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHH
Confidence 567788886 2 3357899977 8898877 55555542 3889999999986543
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.84 E-value=22 Score=23.88 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhhcCCC-----eEEEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEEEec
Q 014217 353 EFGDQELGNAFQAFGR-----VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 420 (428)
Q Consensus 353 ~~t~~~L~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~g~~l~g~~i~v~~a~ 420 (428)
.+...+|..+++.-+. |-.+.|.. .|.||+-.... |..++..|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 4566677777765554 45555532 26888887654 667888899999999999998775
No 408
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=29.00 E-value=1.9e+02 Score=21.83 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=61.9
Q ss_pred CHHHHHHHHhhcC-ceeEEEEEeCCCCCCccceEEEEeCCHHHHHHHHHHhcCCCCCCCCCCcceeeccCcccccccceE
Q 014217 27 TEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL 105 (428)
Q Consensus 27 t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 105 (428)
.-.+|...|.+.| .|..+.+..... .|+.-+.+.+.+.|..+|+.. +. .... ..+
T Consensus 19 ~l~~i~~~la~~~inI~~i~~~~~~~----~~~~~~~~~d~~~a~~~L~~~-G~--------~v~~-----------~sv 74 (144)
T 2f06_A 19 RLTEVTEVLAKENINLSALCIAENAD----FGILRGIVSDPDKAYKALKDN-HF--------AVNI-----------TDV 74 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECSS----CEEEEEEESCHHHHHHHHHHT-TC--------CEEE-----------EEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEeCCHHHHHHHHHHc-CC--------eEee-----------eeE
Confidence 3466888888887 676665533221 133223367777777777653 11 1100 012
Q ss_pred EEecCCCCC-CHHHHHHhccccC-CeEEEEEccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 014217 106 FIGMLPKNV-SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (428)
Q Consensus 106 ~v~nlp~~~-t~~~l~~~f~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~e~a~~a~~~ 162 (428)
..-.++... ...++.+.+...| .|..+.... .. .+....+.+++.+.|.++++.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~--~~~~~~i~~~d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NN--NVANVVIRPSNMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ET--TEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cC--CcEEEEEEeCCHHHHHHHHHH
Confidence 222444333 4566777777777 665544442 11 256777899988888888875
No 409
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.21 E-value=1.1e+02 Score=21.25 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecC
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYES 393 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~ 393 (428)
.|.+|+|..-...|+-+|+|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887666688999999999974
No 410
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.61 E-value=69 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEE
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEV 44 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~ 44 (428)
..-+.|+|||+.++..-|.+++.. ..+..+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 356899999999999999999987 555433
No 411
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.40 E-value=1.4e+02 Score=21.39 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=21.1
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecC
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYES 393 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~ 393 (428)
.|.+|+|.+-...|+-+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887666678999999999974
No 412
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.39 E-value=1.5e+02 Score=21.40 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.7
Q ss_pred CeEEEEEEeeCCCCCeeeEEEEEecC
Q 014217 368 RVLSAKVFVDKATGVSKCFGFVSYES 393 (428)
Q Consensus 368 ~i~~v~i~~~~~~~~~~g~afV~F~~ 393 (428)
.|.+|+|.+-...|+-+|+|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46778887666678999999999974
No 413
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=21.14 E-value=2.3e+02 Score=20.22 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=42.2
Q ss_pred CceEEEeCCCCCCCHHH--HHHHh-----hcCC--------CeEEEEEEeeCC--CCCeeeEEEEEecCHHH---HHHHH
Q 014217 342 GANLFIYHIPQEFGDQE--LGNAF-----QAFG--------RVLSAKVFVDKA--TGVSKCFGFVSYESPAS---AQNAI 401 (428)
Q Consensus 342 ~~~l~V~nLp~~~t~~~--L~~~F-----~~~G--------~i~~v~i~~~~~--~~~~~g~afV~F~~~e~---A~~A~ 401 (428)
.++|.|.|+|+...+.. +..+| ..|. .|..++=...+- .....-...|.|....+ -.+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 48999999999732222 33333 1232 234443322211 11122357788876654 44455
Q ss_pred HHhcCceeCCeEEEEE
Q 014217 402 AMMNGCQLGGKKLKVQ 417 (428)
Q Consensus 402 ~~l~g~~l~g~~i~v~ 417 (428)
.......+.|.+|+++
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5555677899999986
No 414
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.85 E-value=46 Score=29.03 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=25.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCceeEEEE
Q 014217 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNI 46 (428)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~ 46 (428)
.....|+|||+.++..-|..++.....+..+.+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 346799999999999999999975445554433
Done!