BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014218
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/410 (44%), Positives = 247/410 (60%), Gaps = 41/410 (10%)
Query: 50 RPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYF 109
R P S +EL G +DD +N+ + T++G LH + HP+ ++K + E+F
Sbjct: 9 RAPG-SVVELLGKSYPQDD------HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHF 61
Query: 110 DSNYPNKFNK-----FDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTS 164
Y +F +D+L P+V+ QNFD +L+PADH SR D YY++ +LR HTS
Sbjct: 62 YKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTS 121
Query: 165 AHQAELLKEH-NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAA--------- 214
AHQ +LL + FLV GDVYRRD IDS HYP+FHQ+E V +F E A
Sbjct: 122 AHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQL 181
Query: 215 --------------GLDATEYAAKDLKRCLEGLARHLFG-AVEMRWVDTYFPFTNPSYEL 259
++A + DLK+ L L HLFG +E+RWVD YFPFT+PS+E+
Sbjct: 182 FEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEM 241
Query: 260 EIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDE 319
EI F WLEVLGCGV EQ+++ +G + + WAFGLGLERLAM+L+DIPDIRLFW DE
Sbjct: 242 EINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDE 301
Query: 320 RFTSQFSQGQLG--IKFKPFSKYPPCYKDMSFWI-NESFTENNLCEVVRGVAGDLVEEVR 376
RF QF + +KF+P SKYP D+SFW+ +E++ EN+ ++VR + GDLVE+V
Sbjct: 302 RFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVD 361
Query: 377 LIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNV 425
LID F + K TSHCYRI YR MER+L+ ++ + ++E L V
Sbjct: 362 LIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGV 411
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 20/202 (9%)
Query: 131 QNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN---HFLVTGDVYRRD 187
NFD + +P H +R+ +DT++ D+ +LR TS Q +K + G VYR D
Sbjct: 138 HNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRND 197
Query: 188 SIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMRWV 246
D TH P+FHQMEG+ + T + +LK L R+ F +++R+
Sbjct: 198 -YDQTHTPMFHQMEGLIV------------DTNISFTNLKGTLHDFLRNFFEEDLQIRFR 244
Query: 247 DTYFPFTNPSYELEIFFKEN-WLEVLGCGVTEQEILKRSGKLNNV--AWAFGLGLERLAM 303
+YFPFT PS E+++ K WLEVLGCG+ +L+ G V +AFG+G+ERL M
Sbjct: 245 PSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTM 304
Query: 304 VLFDIPDIRLFWSSDERFTSQF 325
+ + + D+R F+ +D RF QF
Sbjct: 305 LRYGVTDLRSFFENDLRFLKQF 326
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 32/214 (14%)
Query: 132 NFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN-----HFLVTGDVYRR 186
NF+ + +P H +R D++Y+ + ++R HTS QA +++ N + G VYRR
Sbjct: 85 NFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRR 144
Query: 187 DSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMRW 245
DS D+TH F Q+EG+ + DLK LE +A+ LFGA E+R
Sbjct: 145 DSDDATHSHQFTQIEGLVV------------DKNIKMSDLKGTLELVAKKLFGADREIRL 192
Query: 246 VDTYFPFTNPSYELEI-FFK-----------ENWLEVLGCGVTEQEILKRSGKLNN--VA 291
+YFPFT PS E+++ FK W+E+LG G+ +L+ +G +N
Sbjct: 193 RPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSG 252
Query: 292 WAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQF 325
+AFG+G +R+AM+ + I DIR F+++D RF QF
Sbjct: 253 FAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQF 286
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 119/271 (43%), Gaps = 48/271 (17%)
Query: 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRS 146
G L HPI +++ + E F + + + S NFD + +P H +R
Sbjct: 8 GASLFSGGLHPITLMERELVEIFRALGYQAVEGPE----VESEFFNFDALNIPEHHPARD 63
Query: 147 YNDTYY---------------VDSQTVLRCHTSAHQAELLKEHN---HFLVTGDVYRRDS 188
DT++ V+ + +LR HTS Q + H +V G V+R +
Sbjct: 64 MWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQ 123
Query: 189 IDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMRWVD 247
D+TH VFHQ+EG+ + A LK + LA+ LFG ++R+
Sbjct: 124 TDATHEAVFHQLEGLVV------------GEGIAMAHLKGAIYELAQALFGPDSKVRFQP 171
Query: 248 TYFPFTNPSYELEIFFKEN--WLEVLGCGVTEQEILKRSGKLNN-----------VAWAF 294
YFPF P + +++ E WLE+ G G+ ++ + +AF
Sbjct: 172 VYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAF 231
Query: 295 GLGLERLAMVLFDIPDIRLFWSSDERFTSQF 325
GLG+ERLAM+ + IPDIR F+ +F QF
Sbjct: 232 GLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 262
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRS 146
G L HPI +++ + E F + + + S NFD + +P H +R
Sbjct: 92 GASLFSGGLHPITLMERELVEIFRALGYQAVEGPE----VESEFFNFDALNIPEHHPARD 147
Query: 147 YNDTYY---------------VDSQTVLRCHTSAHQAELLKEHN---HFLVTGDVYRRDS 188
DT++ V+ + +LR HTS Q + H +V G V+R +
Sbjct: 148 MWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQ 207
Query: 189 IDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMRWVD 247
D+TH VFHQ+EG+ + A LK + LA+ LFG ++R+
Sbjct: 208 TDATHEAVFHQLEGLVV------------GEGIAMAHLKGAIYELAQALFGPDSKVRFQP 255
Query: 248 TYFPFTNPSYELEIFFKEN--WLEVLGCGVTEQEILKRSGKLNN-----------VAWAF 294
YFPF P + +++ E WLE+ G G+ ++ + +AF
Sbjct: 256 VYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAF 315
Query: 295 GLGLERLAMVLFDIPDIRLFWSSDERFTSQFS 326
GLG+ERLAM+ + IPDIR F+ +F QF
Sbjct: 316 GLGVERLAMLRYGIPDIRYFFGGRLKFLEQFK 347
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 32/185 (17%)
Query: 144 SRSYNDTYYVDS--QTVLRCHTSAHQAELLKEHNH--------FLVTGDVYRRDSIDSTH 193
S+ Y + +D + +LR HT++ A L + V+R +++D+TH
Sbjct: 307 SQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATH 366
Query: 194 YPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF---GAVEMRWVDTYF 250
FHQ+EGV + G L G+ R F G ++R+ Y
Sbjct: 367 LAEFHQIEGVVADHGLTLG----------------HLMGVLREFFTKLGITQLRFKPAYN 410
Query: 251 PFTNPSYELEIFFK--ENWLEVLGCGVTEQEILKRSGKLNNVA-WAFGLGLERLAMVLFD 307
P+T PS E+ + + + W+EV GV E+L G NV+ A+GL LER M+ +
Sbjct: 411 PYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYG 470
Query: 308 IPDIR 312
I +IR
Sbjct: 471 INNIR 475
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMT 388
+ F+ S++P ++D++ + + +VR AG +E + L D + +G
Sbjct: 682 LAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHK 741
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSK 422
S + + +R +R+L DE++ E V E ++++
Sbjct: 742 SLAFHLRFRHPKRTLRDEEVEEAVSRVAEALRAR 775
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMT 388
+ F+ S++P ++D++ + + +VR AG +E + L D + +G
Sbjct: 682 LAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHK 741
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSK 422
S + + +R +R+L DE++ E V E ++++
Sbjct: 742 SLAFHLRFRHPKRTLRDEEVEEAVSRVAEALRAR 775
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNK---KGMT 388
I ++ K+P +D++ +N + L +++ D+++ + D + + KG
Sbjct: 702 INYEQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKK 761
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSK 422
S R+ Y E +LTDE ++++ + E +Q++
Sbjct: 762 SVAIRLNYLDTEDTLTDERVSKIHDKILEALQAQ 795
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNK---KGMT 388
I ++ K+P +D++ +N + L +++ D+++ + D + + KG
Sbjct: 698 INYEQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKK 757
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSK 422
S R+ Y E +LTDE ++++ + E +Q++
Sbjct: 758 SVAIRLNYLDTEDTLTDERVSKIHDKILEALQAE 791
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 225 DLKRCLEGLARHLFGAVEMRWV--DTYFPFTNPSYELEIF-----FKENWLEVLGCGVTE 277
D K EGL FG +++ + + P + E++ KE WLEV GV
Sbjct: 264 DGKAIAEGLLSQ-FGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKE-WLEVATFGVYS 321
Query: 278 QEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
L + G ++ GLG+ERLAM+ + D+R
Sbjct: 322 PVALSKYG-IDVPVMNLGLGVERLAMISGNFADVR 355
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 225 DLKRCLEGLARHLFGAVEMRWV--DTYFPFTNPSYELEIF-----FKENWLEVLGCGVTE 277
D K EGL FG +++ + + P + E++ KE WLEV GV
Sbjct: 264 DGKAIAEGLLSQ-FGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKE-WLEVATFGVYS 321
Query: 278 QEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
L + G ++ GLG+ERLAM+ + D+R
Sbjct: 322 PVALSKYG-IDVPVMNLGLGVERLAMISGNFADVR 355
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 225 DLKRCLEGLARHLFGAVEMRWV--DTYFPFTNPSYELEIF-----FKENWLEVLGCGVTE 277
D K EGL FG +++ + + P + E++ KE WLEV GV
Sbjct: 264 DGKAIAEGLLSQ-FGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKE-WLEVATFGVYS 321
Query: 278 QEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
L + G ++ GLG+ERLAM+ + D+R
Sbjct: 322 PVALSKYG-IDVPVMNLGLGVERLAMISGNFADVR 355
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 225 DLKRCLEGLARHLFGAVEMRWV--DTYFPFTNPSYELEIF-----FKENWLEVLGCGVTE 277
D K EGL FG +++ + + P + E++ KE WLEV GV
Sbjct: 264 DGKAIAEGLLSQ-FGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKE-WLEVATFGVYS 321
Query: 278 QEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
L + G ++ GLG+ERLAM+ + D+R
Sbjct: 322 PVALSKYG-IDVPVMNLGLGVERLAMISGNFADVR 355
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 34/214 (15%)
Query: 121 DDLCPIVSVKQNFDDVLVPA--DHVSRSYNDTYYVDSQTVLRCH-------TSAHQAELL 171
DDL +++ + DD+ D V + + + S LR H T +H A+ L
Sbjct: 143 DDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKL 202
Query: 172 KEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLE 231
+RR+ Q E + Y + L E + D K E
Sbjct: 203 PLPIKLFSIDRCFRRE-----------QGEDATRLYTYFSASCVLVDEELSVDDGKAVAE 251
Query: 232 GLARHL-FGAVEMRWVDTYFPFTNPSYELEIF------------FKENWLEVLGCGVTEQ 278
L R F R + + P + E+F + + W+E+ G+
Sbjct: 252 ALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSP 311
Query: 279 EILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
L + GLG+ERLAM+L+ D+R
Sbjct: 312 TALAEY-DIPYPVMNLGLGVERLAMILYGYDDVR 344
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 34/214 (15%)
Query: 121 DDLCPIVSVKQNFDDVLVPA--DHVSRSYNDTYYVDSQTVLRCH-------TSAHQAELL 171
DDL +++ + DD+ D V + + + S LR H T +H A+ L
Sbjct: 143 DDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKL 202
Query: 172 KEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLE 231
+RR+ Q E + Y + L E + D K E
Sbjct: 203 PLPIKLFSIDRCFRRE-----------QGEDATRLYTYFSASCVLVDEELSVDDGKAVAE 251
Query: 232 GLARHL-FGAVEMRWVDTYFPFTNPSYELEIF------------FKENWLEVLGCGVTEQ 278
L R F R + + P + E+F + + W+E+ G+
Sbjct: 252 ALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSP 311
Query: 279 EILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
L + GLG+ERLAM+L+ D+R
Sbjct: 312 TALAEY-DIPYPVMNLGLGVERLAMILYGYDDVR 344
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 267 WLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312
W+EV GV L + ++ GLG+ERLAM+++ D+R
Sbjct: 304 WIEVATFGVYSPIALAKYN-IDVPVMNLGLGVERLAMIIYGYEDVR 348
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
(Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.75 A Resolution
Length = 451
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 215 GLDATEYAAKDLKRCLEGLARHLFGAV-EMRWVDTYFPFTNPSYELEI 261
G+D+T Y AKD R L +R+ G +++ D F NP ++E+
Sbjct: 97 GIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEM 144
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 387 MTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNV 425
M YR A S+E +L + NEL W VR ++ L V
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV 57
>pdb|4IFD|E Chain E, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 267
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 94 NQHPIGILKNAIYEYFDSNY-PNKFNKFDDL 123
+ HPI ++ AIY +S Y P + FDDL
Sbjct: 136 HSHPISLISFAIYSALNSTYLPKLISAFDDL 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,177,423
Number of Sequences: 62578
Number of extensions: 562596
Number of successful extensions: 1135
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 22
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)