Query 014218
Match_columns 428
No_of_seqs 370 out of 2202
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02788 phenylalanine-tRNA sy 100.0 7.2E-99 2E-103 759.9 43.8 391 38-428 9-402 (402)
2 KOG2783 Phenylalanyl-tRNA synt 100.0 7.6E-96 2E-100 712.3 22.6 377 46-428 28-436 (436)
3 TIGR00469 pheS_mito phenylalan 100.0 7.9E-91 1.7E-95 705.7 39.6 368 54-427 5-460 (460)
4 PF01409 tRNA-synt_2d: tRNA sy 100.0 9.9E-53 2.1E-57 404.1 23.4 222 87-325 8-247 (247)
5 COG0072 PheT Phenylalanyl-tRNA 100.0 2.9E-52 6.3E-57 449.4 29.8 291 95-428 350-650 (650)
6 PRK00629 pheT phenylalanyl-tRN 100.0 3.2E-51 6.9E-56 451.8 33.9 293 93-428 484-790 (791)
7 CHL00192 syfB phenylalanyl-tRN 100.0 1.1E-50 2.4E-55 441.3 33.9 291 92-428 394-703 (704)
8 PRK00488 pheS phenylalanyl-tRN 100.0 2E-51 4.3E-56 406.5 23.2 222 87-325 99-339 (339)
9 TIGR00472 pheT_bact phenylalan 100.0 5.2E-50 1.1E-54 442.8 33.8 318 68-428 452-798 (798)
10 COG0016 PheS Phenylalanyl-tRNA 100.0 2.3E-48 4.9E-53 382.7 20.5 221 87-324 102-335 (335)
11 PLN02853 Probable phenylalanyl 100.0 4.6E-45 1E-49 374.5 22.4 232 76-323 201-483 (492)
12 TIGR00468 pheS phenylalanyl-tR 100.0 1.6E-43 3.5E-48 349.2 22.9 221 88-326 64-293 (294)
13 PTZ00326 phenylalanyl-tRNA syn 100.0 3.2E-42 6.9E-47 355.3 21.9 227 76-318 209-491 (494)
14 PRK04172 pheS phenylalanyl-tRN 100.0 1.8E-36 4E-41 318.4 21.7 230 76-324 213-487 (489)
15 cd00496 PheRS_alpha_core Pheny 100.0 6.2E-36 1.3E-40 283.7 20.9 201 96-320 1-218 (218)
16 cd00769 PheRS_beta_core Phenyl 100.0 4.5E-29 9.7E-34 233.2 17.8 186 99-301 3-198 (198)
17 TIGR00470 sepS O-phosphoseryl- 100.0 5.3E-29 1.1E-33 251.8 17.9 212 84-314 34-340 (533)
18 PRK06253 O-phosphoseryl-tRNA s 100.0 2.8E-28 6.1E-33 250.7 21.8 163 156-352 183-361 (529)
19 PRK09616 pheT phenylalanyl-tRN 100.0 1.1E-27 2.5E-32 255.3 21.1 189 90-302 353-549 (552)
20 PF03147 FDX-ACB: Ferredoxin-f 100.0 2.9E-28 6.3E-33 201.3 11.1 91 338-428 1-94 (94)
21 PLN02265 probable phenylalanyl 99.9 1E-26 2.2E-31 249.6 20.1 189 90-301 391-596 (597)
22 TIGR00471 pheT_arch phenylalan 99.9 3.3E-26 7.3E-31 243.9 21.0 186 92-301 358-550 (551)
23 TIGR02367 PylS pyrrolysyl-tRNA 99.9 2.9E-26 6.2E-31 232.5 19.1 211 76-314 216-439 (453)
24 KOG2784 Phenylalanyl-tRNA synt 99.9 4.5E-26 9.8E-31 221.9 10.8 241 77-346 193-482 (483)
25 PRK09537 pylS pyrolysyl-tRNA s 99.9 1.2E-24 2.6E-29 221.3 20.0 197 89-313 197-402 (417)
26 KOG2472 Phenylalanyl-tRNA synt 99.8 4.2E-19 9.1E-24 179.7 12.8 184 90-301 386-577 (578)
27 cd00768 class_II_aaRS-like_cor 99.8 4.4E-18 9.5E-23 158.3 13.8 171 99-287 3-188 (211)
28 COG2024 Phenylalanyl-tRNA synt 99.5 2E-14 4.2E-19 141.6 6.9 164 157-352 183-368 (536)
29 PRK08655 prephenate dehydrogen 99.3 9E-12 2E-16 129.9 9.6 78 338-428 356-436 (437)
30 cd00669 Asp_Lys_Asn_RS_core As 98.5 3.6E-06 7.9E-11 82.5 16.5 183 99-312 5-259 (269)
31 cd00670 Gly_His_Pro_Ser_Thr_tR 97.9 0.00034 7.5E-09 66.4 14.3 156 99-271 6-192 (235)
32 COG4937 Predicted regulatory d 97.7 0.00031 6.8E-09 61.2 9.9 102 305-428 58-163 (171)
33 PTZ00417 lysine-tRNA ligase; P 97.6 0.00051 1.1E-08 74.1 11.1 114 99-238 257-371 (585)
34 PRK06462 asparagine synthetase 97.5 0.0005 1.1E-08 69.6 10.3 116 99-236 34-153 (335)
35 PRK00484 lysS lysyl-tRNA synth 97.5 0.001 2.2E-08 70.8 12.2 113 99-237 176-289 (491)
36 PRK12445 lysyl-tRNA synthetase 97.4 0.001 2.2E-08 70.9 11.4 113 99-237 188-301 (505)
37 PF00152 tRNA-synt_2: tRNA syn 97.4 0.001 2.2E-08 67.2 10.6 97 99-205 26-125 (335)
38 PRK09350 poxB regulator PoxA; 97.4 0.00047 1E-08 68.9 7.7 114 99-238 9-128 (306)
39 cd00775 LysRS_core Lys_tRNA sy 97.3 0.0021 4.6E-08 64.9 12.0 113 99-237 12-125 (329)
40 TIGR00499 lysS_bact lysyl-tRNA 97.3 0.00087 1.9E-08 71.3 9.5 113 99-237 176-289 (496)
41 PLN02502 lysyl-tRNA synthetase 97.3 0.001 2.2E-08 71.5 10.0 112 100-237 234-346 (553)
42 PF00587 tRNA-synt_2b: tRNA sy 97.3 0.0022 4.9E-08 58.3 10.4 130 99-244 3-149 (173)
43 PTZ00385 lysyl-tRNA synthetase 97.3 0.0019 4.1E-08 70.3 11.3 113 99-237 237-350 (659)
44 cd00776 AsxRS_core Asx tRNA sy 97.2 0.0021 4.6E-08 64.7 10.7 93 99-205 28-121 (322)
45 PRK00037 hisS histidyl-tRNA sy 97.1 0.002 4.3E-08 66.8 9.0 112 88-205 11-129 (412)
46 TIGR00462 genX lysyl-tRNA synt 97.0 0.0013 2.8E-08 65.7 6.7 114 99-238 5-123 (304)
47 cd00777 AspRS_core Asp tRNA sy 97.0 0.0089 1.9E-07 59.1 12.4 111 99-237 5-118 (280)
48 TIGR00458 aspS_arch aspartyl-t 96.9 0.0057 1.2E-07 64.0 10.9 93 99-205 137-231 (428)
49 PRK02983 lysS lysyl-tRNA synth 96.9 0.0029 6.2E-08 73.2 9.1 114 99-238 774-888 (1094)
50 PRK05159 aspC aspartyl-tRNA sy 96.9 0.0073 1.6E-07 63.4 11.1 93 99-205 140-234 (437)
51 PRK03932 asnC asparaginyl-tRNA 96.8 0.011 2.3E-07 62.3 11.1 96 99-205 137-239 (450)
52 TIGR00442 hisS histidyl-tRNA s 96.7 0.007 1.5E-07 62.5 9.2 108 90-205 9-128 (397)
53 TIGR00457 asnS asparaginyl-tRN 96.7 0.008 1.7E-07 63.4 9.6 98 99-204 140-241 (453)
54 TIGR00459 aspS_bact aspartyl-t 96.6 0.017 3.8E-07 62.5 11.5 112 99-238 142-256 (583)
55 PLN02530 histidine-tRNA ligase 96.5 0.024 5.2E-07 60.3 12.0 98 94-201 83-191 (487)
56 cd00773 HisRS-like_core Class 96.4 0.026 5.5E-07 54.9 10.8 96 98-201 5-109 (261)
57 PTZ00401 aspartyl-tRNA synthet 96.3 0.017 3.6E-07 62.3 9.3 112 100-238 218-331 (550)
58 KOG1885 Lysyl-tRNA synthetase 96.3 0.0056 1.2E-07 63.2 5.4 152 100-289 230-390 (560)
59 COG1190 LysU Lysyl-tRNA synthe 96.2 0.0065 1.4E-07 63.6 5.5 114 99-238 184-298 (502)
60 PLN02850 aspartate-tRNA ligase 96.2 0.018 3.9E-07 61.8 8.8 89 100-202 230-320 (530)
61 PRK12820 bifunctional aspartyl 96.1 0.035 7.5E-07 61.3 10.8 113 99-238 160-274 (706)
62 PRK12444 threonyl-tRNA synthet 96.1 0.054 1.2E-06 59.6 12.4 127 97-240 276-417 (639)
63 PLN02903 aminoacyl-tRNA ligase 96.1 0.046 9.9E-07 59.8 11.4 112 99-238 207-322 (652)
64 PRK00476 aspS aspartyl-tRNA sy 96.1 0.049 1.1E-06 59.3 11.5 113 99-238 145-259 (588)
65 COG2269 Truncated, possibly in 96.0 0.016 3.4E-07 56.7 6.5 94 99-201 20-116 (322)
66 PLN02603 asparaginyl-tRNA synt 96.0 0.057 1.2E-06 58.3 11.4 100 100-204 231-352 (565)
67 cd00771 ThrRS_core Threonyl-tR 95.7 0.093 2E-06 52.2 11.0 125 98-239 33-172 (298)
68 cd00779 ProRS_core_prok Prolyl 95.6 0.14 3E-06 49.8 11.6 170 99-287 35-225 (255)
69 cd00772 ProRS_core Prolyl-tRNA 95.6 0.28 6.1E-06 48.0 13.7 155 97-266 34-211 (264)
70 CHL00201 syh histidine-tRNA sy 95.6 0.073 1.6E-06 55.8 10.2 101 97-205 20-133 (430)
71 cd00770 SerRS_core Seryl-tRNA 95.6 0.17 3.6E-06 50.4 12.1 187 101-306 58-277 (297)
72 PLN02532 asparagine-tRNA synth 94.9 0.2 4.2E-06 54.8 11.0 50 154-203 369-419 (633)
73 cd00778 ProRS_core_arch_euk Pr 94.7 0.13 2.9E-06 50.1 8.4 132 96-240 33-182 (261)
74 PLN02221 asparaginyl-tRNA synt 94.7 0.38 8.3E-06 52.1 12.3 52 154-205 306-358 (572)
75 TIGR00443 hisZ_biosyn_reg ATP 94.5 0.18 3.8E-06 50.6 9.0 95 97-202 10-115 (314)
76 PRK12305 thrS threonyl-tRNA sy 94.4 0.19 4.1E-06 54.5 9.6 125 98-239 209-349 (575)
77 TIGR00408 proS_fam_I prolyl-tR 94.4 0.25 5.3E-06 52.5 10.2 192 98-305 41-264 (472)
78 TIGR00418 thrS threonyl-tRNA s 94.4 0.25 5.5E-06 53.4 10.4 125 98-239 203-343 (563)
79 TIGR00415 serS_MJ seryl-tRNA s 94.4 1.8 3.8E-05 46.2 16.2 139 154-305 307-485 (520)
80 PLN02678 seryl-tRNA synthetase 94.3 0.93 2E-05 47.8 14.0 131 98-240 173-322 (448)
81 PRK12421 ATP phosphoribosyltra 94.3 0.27 5.8E-06 50.9 9.8 101 96-203 22-130 (392)
82 PRK04173 glycyl-tRNA synthetas 94.1 0.41 8.9E-06 50.6 10.9 140 155-302 158-333 (456)
83 cd00774 GlyRS-like_core Glycyl 94.0 0.2 4.2E-06 48.8 7.7 121 98-239 35-167 (254)
84 TIGR00414 serS seryl-tRNA synt 94.0 0.65 1.4E-05 48.6 12.1 128 99-240 173-317 (418)
85 PLN02908 threonyl-tRNA synthet 94.0 0.3 6.4E-06 54.3 10.0 101 98-207 324-439 (686)
86 PRK00960 seryl-tRNA synthetase 93.8 1.9 4.2E-05 46.2 15.2 143 154-306 307-486 (517)
87 PRK00413 thrS threonyl-tRNA sy 93.7 0.4 8.8E-06 52.7 10.5 125 98-239 273-413 (638)
88 PRK09194 prolyl-tRNA synthetas 93.6 1.7 3.7E-05 47.2 14.9 128 97-240 49-191 (565)
89 PRK12420 histidyl-tRNA synthet 93.5 0.88 1.9E-05 47.5 12.1 97 97-201 20-126 (423)
90 COG0173 AspS Aspartyl-tRNA syn 93.5 0.64 1.4E-05 49.6 10.9 110 100-239 146-260 (585)
91 PRK12292 hisZ ATP phosphoribos 93.2 0.54 1.2E-05 48.6 9.8 97 97-203 19-127 (391)
92 TIGR00409 proS_fam_II prolyl-t 93.1 1.1 2.4E-05 48.7 12.4 129 97-240 49-191 (568)
93 PTZ00425 asparagine-tRNA ligas 93.1 0.92 2E-05 49.3 11.6 51 155-205 324-375 (586)
94 PRK14799 thrS threonyl-tRNA sy 92.4 0.89 1.9E-05 49.2 10.4 97 99-204 172-283 (545)
95 PF13393 tRNA-synt_His: Histid 92.3 1 2.2E-05 44.7 10.2 99 98-205 13-118 (311)
96 PLN02972 Histidyl-tRNA synthet 91.6 1.8 3.9E-05 48.5 11.7 98 97-205 343-448 (763)
97 COG0124 HisS Histidyl-tRNA syn 91.3 1.8 3.9E-05 45.4 10.9 101 97-205 20-132 (429)
98 PRK08661 prolyl-tRNA synthetas 89.7 3.3 7.2E-05 44.1 11.5 176 97-287 46-243 (477)
99 PRK12325 prolyl-tRNA synthetas 89.3 2.2 4.8E-05 44.8 9.8 130 95-240 47-191 (439)
100 PRK05431 seryl-tRNA synthetase 89.3 3 6.5E-05 43.7 10.6 128 99-240 170-315 (425)
101 PRK12293 hisZ ATP phosphoribos 89.0 2.6 5.7E-05 41.6 9.5 81 97-187 21-108 (281)
102 PRK12295 hisZ ATP phosphoribos 88.3 4.9 0.00011 41.4 11.2 92 97-201 6-106 (373)
103 PLN02320 seryl-tRNA synthetase 88.2 5.5 0.00012 42.6 11.7 127 100-240 234-378 (502)
104 PLN02837 threonine-tRNA ligase 87.0 3.2 6.9E-05 45.7 9.4 128 99-240 247-391 (614)
105 COG0017 AsnS Aspartyl/asparagi 86.2 3.4 7.3E-05 43.3 8.6 89 100-202 139-228 (435)
106 PRK12294 hisZ ATP phosphoribos 83.4 3.1 6.8E-05 41.0 6.6 83 98-188 10-98 (272)
107 PRK00476 aspS aspartyl-tRNA sy 77.4 4.1 8.9E-05 44.5 5.7 48 293-363 531-580 (588)
108 PRK03991 threonyl-tRNA synthet 72.7 23 0.00049 39.1 9.9 99 100-207 232-346 (613)
109 KOG2411 Aspartyl-tRNA syntheta 71.3 13 0.00027 39.6 7.1 110 100-238 183-297 (628)
110 PLN02903 aminoacyl-tRNA ligase 71.2 8.1 0.00017 42.7 6.0 92 245-362 512-642 (652)
111 KOG0556 Aspartyl-tRNA syntheta 70.8 2.2 4.8E-05 44.0 1.5 71 99-188 232-308 (533)
112 PLN02603 asparaginyl-tRNA synt 70.3 4.3 9.2E-05 44.1 3.6 22 292-313 531-552 (565)
113 PTZ00425 asparagine-tRNA ligas 68.9 4.4 9.6E-05 44.1 3.4 21 292-312 552-572 (586)
114 PRK12820 bifunctional aspartyl 68.4 11 0.00024 42.0 6.4 48 293-363 547-596 (706)
115 TIGR00459 aspS_bact aspartyl-t 67.5 14 0.00031 40.3 6.9 47 293-362 526-574 (583)
116 PLN02850 aspartate-tRNA ligase 65.2 6 0.00013 42.7 3.5 53 257-313 443-517 (530)
117 PRK06462 asparagine synthetase 64.7 6.9 0.00015 39.7 3.7 27 284-312 295-321 (335)
118 PF11324 DUF3126: Protein of u 64.5 21 0.00046 27.2 5.3 38 230-271 5-42 (63)
119 PF00152 tRNA-synt_2: tRNA syn 62.9 7.5 0.00016 39.2 3.5 52 257-312 248-325 (335)
120 PTZ00401 aspartyl-tRNA synthet 60.0 8.6 0.00019 41.7 3.6 22 292-313 516-537 (550)
121 PLN02221 asparaginyl-tRNA synt 59.7 8.5 0.00018 41.9 3.4 41 83-128 151-199 (572)
122 PRK03932 asnC asparaginyl-tRNA 59.5 8.9 0.00019 40.5 3.5 28 284-313 410-437 (450)
123 TIGR00462 genX lysyl-tRNA synt 58.8 8.1 0.00018 38.6 2.9 22 292-313 279-300 (304)
124 COG0173 AspS Aspartyl-tRNA syn 58.4 21 0.00045 38.5 5.9 47 294-363 530-578 (585)
125 cd00776 AsxRS_core Asx tRNA sy 57.6 10 0.00023 38.1 3.5 21 292-312 292-312 (322)
126 COG0172 SerS Seryl-tRNA synthe 56.2 95 0.0021 32.7 10.2 169 96-282 171-367 (429)
127 PRK09350 poxB regulator PoxA; 52.8 12 0.00026 37.5 3.0 27 284-312 278-304 (306)
128 cd00775 LysRS_core Lys_tRNA sy 52.0 12 0.00027 37.7 3.0 27 284-312 293-319 (329)
129 cd00777 AspRS_core Asp tRNA sy 49.9 15 0.00033 36.3 3.1 27 284-312 244-270 (280)
130 PF11148 DUF2922: Protein of u 49.8 28 0.00061 26.7 4.0 36 380-418 6-41 (69)
131 PLN02532 asparagine-tRNA synth 49.8 14 0.00031 40.6 3.2 22 292-313 599-620 (633)
132 PF00035 dsrm: Double-stranded 49.0 64 0.0014 23.6 5.9 47 227-274 2-49 (67)
133 PRK05159 aspC aspartyl-tRNA sy 48.8 17 0.00036 38.3 3.4 51 258-312 351-423 (437)
134 TIGR00458 aspS_arch aspartyl-t 48.2 14 0.00031 38.7 2.8 51 258-312 342-414 (428)
135 PRK12445 lysyl-tRNA synthetase 47.9 16 0.00034 39.4 3.1 27 284-312 467-493 (505)
136 TIGR00457 asnS asparaginyl-tRN 47.0 15 0.00032 38.9 2.8 21 292-312 419-439 (453)
137 PF05651 Diacid_rec: Putative 45.7 29 0.00062 30.5 3.9 34 250-285 66-100 (135)
138 COG0017 AsnS Aspartyl/asparagi 44.9 18 0.00039 38.0 2.9 20 293-312 402-421 (435)
139 KOG1936 Histidyl-tRNA syntheta 44.8 99 0.0021 32.6 8.1 90 100-200 79-178 (518)
140 PRK00484 lysS lysyl-tRNA synth 44.5 19 0.00042 38.5 3.1 27 284-312 453-479 (491)
141 TIGR00499 lysS_bact lysyl-tRNA 43.8 20 0.00042 38.5 3.1 21 292-312 464-484 (496)
142 PRK04081 hypothetical protein; 43.7 47 0.001 31.1 5.1 40 374-419 60-102 (207)
143 COG0442 ProS Prolyl-tRNA synth 43.5 4.5E+02 0.0098 28.3 13.5 83 98-189 50-143 (500)
144 PLN02502 lysyl-tRNA synthetase 43.1 21 0.00045 38.8 3.1 28 283-312 514-541 (553)
145 PTZ00417 lysine-tRNA ligase; P 37.6 28 0.00062 38.1 3.2 27 284-312 547-573 (585)
146 KOG2411 Aspartyl-tRNA syntheta 36.7 61 0.0013 34.7 5.2 21 293-313 570-590 (628)
147 KOG0556 Aspartyl-tRNA syntheta 36.3 21 0.00045 37.1 1.7 21 293-313 500-520 (533)
148 PRK07080 hypothetical protein; 36.1 3.5E+02 0.0075 27.4 10.2 92 155-256 126-225 (317)
149 PTZ00385 lysyl-tRNA synthetase 36.0 29 0.00063 38.5 2.9 28 284-313 528-555 (659)
150 PRK10515 hypothetical protein; 34.9 43 0.00094 27.1 3.0 24 398-421 29-52 (90)
151 KOG0554 Asparaginyl-tRNA synth 34.4 33 0.00072 35.5 2.8 92 101-202 138-234 (446)
152 PF11548 Receptor_IA-2: Protei 34.0 72 0.0016 26.2 4.2 38 388-427 45-82 (91)
153 TIGR00388 glyQ glycyl-tRNA syn 33.6 1.9E+02 0.0042 28.5 7.7 77 234-318 96-182 (293)
154 PF11656 DUF3811: YjbD family 33.6 44 0.00096 27.0 2.8 24 398-421 27-50 (87)
155 COG0441 ThrS Threonyl-tRNA syn 32.1 1.2E+02 0.0026 33.3 6.8 88 96-189 216-316 (589)
156 COG0423 GRS1 Glycyl-tRNA synth 30.7 1.3E+02 0.0029 32.4 6.6 123 150-273 154-323 (558)
157 COG3971 2-keto-4-pentenoate hy 30.2 1.2E+02 0.0026 29.7 5.7 65 274-367 63-134 (264)
158 COG3705 HisZ ATP phosphoribosy 28.7 76 0.0017 33.0 4.4 82 97-187 19-108 (390)
159 cd00733 GlyRS_alpha_core Class 27.4 1.9E+02 0.0041 28.3 6.5 76 234-317 95-180 (279)
160 smart00358 DSRM Double-strande 27.1 2.2E+02 0.0048 20.4 5.7 42 228-269 3-44 (67)
161 PRK09348 glyQ glycyl-tRNA synt 27.0 2E+02 0.0044 28.2 6.6 70 234-311 99-177 (283)
162 PF04359 DUF493: Protein of un 25.1 3.1E+02 0.0068 21.6 6.6 69 338-416 5-76 (85)
163 TIGR01639 P_fal_TIGR01639 Plas 24.5 15 0.00032 27.7 -1.2 25 395-419 2-26 (61)
164 cd01612 APG12_C Ubiquitin-like 23.5 83 0.0018 25.4 2.9 36 332-368 4-39 (87)
165 PF01545 Cation_efflux: Cation 23.4 4.5E+02 0.0098 25.1 8.7 62 357-423 207-268 (284)
166 PF02873 MurB_C: UDP-N-acetyle 22.6 91 0.002 26.2 3.0 26 402-427 72-97 (105)
167 PRK14894 glycyl-tRNA synthetas 21.9 7.4E+02 0.016 26.9 10.2 111 155-273 137-265 (539)
168 PF11829 DUF3349: Protein of u 21.5 92 0.002 25.8 2.8 18 400-417 33-50 (96)
169 KOG0554 Asparaginyl-tRNA synth 21.5 1.5E+02 0.0032 30.9 4.8 50 274-344 377-444 (446)
170 KOG0033 Ca2+/calmodulin-depend 21.3 72 0.0016 31.4 2.4 68 254-328 154-227 (355)
171 TIGR01297 CDF cation diffusion 21.3 6.1E+02 0.013 24.0 9.1 62 356-422 193-254 (268)
172 PF00076 RRM_1: RNA recognitio 21.2 3.1E+02 0.0068 19.4 8.8 54 351-415 6-59 (70)
173 PF12720 DUF3807: Protein of u 20.7 1E+02 0.0022 28.3 3.2 20 400-419 47-66 (172)
No 1
>PLN02788 phenylalanine-tRNA synthetase
Probab=100.00 E-value=7.2e-99 Score=759.93 Aligned_cols=391 Identities=79% Similarity=1.332 Sum_probs=363.7
Q ss_pred CCCCCCCCCCCCCCCCccEEEECCEEeccCcccc-CCCCCCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 014218 38 TSTSPLPLKKKWRPPAASALELGGVKMAKDDIVR-DDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNK 116 (428)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~g 116 (428)
+.+++..+++.++.|....++++|+.|.+|+... +|.|+|||++|++++||++|.+..||+.+++++|+++|.++++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~g 88 (402)
T PLN02788 9 TPATAKSSSRRYRAPAVSAVEIGGVAIARDEVVREDDPTNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNK 88 (402)
T ss_pred ccCCCcccccccCCCceeEEeecCcccccCcccccCCccCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcccCC
Confidence 4455667788889999999999999988887433 567899999999999999999999999999999999999976569
Q ss_pred cEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEEEEeeEEecCCCCCCCCc
Q 014218 117 FNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFLVTGDVYRRDSIDSTHYP 195 (428)
Q Consensus 117 f~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~FEiG~Vyr~d~~d~~~~p 195 (428)
|++++.++|+++.++|||+|++|+|||+|.+.|++|.++..+||||++|++.++++ +..++|.+|+|||+|++|++|+|
T Consensus 89 f~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~iD~tH~p 168 (402)
T PLN02788 89 FKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTHFLVTGDVYRRDSIDATHYP 168 (402)
T ss_pred cEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCcEEEEeeEeecCCCCcccCc
Confidence 99998778999999999999999999999999999999999999999999999999 55699999999999999999999
Q ss_pred ceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECCeeEEEeeeee
Q 014218 196 VFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGV 275 (428)
Q Consensus 196 ~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ 275 (428)
+||||+|++++.+++|..++.+...+.+.+|||+||.++..+++..+++|.++++||+|||++++|+++|+|+|++|||+
T Consensus 169 ~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~~~~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG~G~ 248 (402)
T PLN02788 169 VFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGDVEMRWVDAYFPFTNPSFELEIFFKGEWLEVLGCGV 248 (402)
T ss_pred cceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCCeEEEEEECCEEEEEeeEEE
Confidence 99999999999888887654334567899999999999999965567889999999999999999999999999999999
Q ss_pred ccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEecCCC
Q 014218 276 TEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESF 355 (428)
Q Consensus 276 ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~ 355 (428)
+||+|++++|++.+.+||||||||||+|++++|||||+||+.|.||++||...+...+|+|+||||+|+||||||||+++
T Consensus 249 vhP~Vl~~~gi~~~~g~AfglgLeRLaml~~~I~DIRlf~~~D~rfl~Qf~~~~~~~~fkp~SkfP~v~RDiSf~v~~~v 328 (402)
T PLN02788 249 TEQEILKNNGRSDNVAWAFGLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQLGVKFKPYSKYPPCYKDISFWISDEF 328 (402)
T ss_pred EcHHHHHHcCCCCCcEEEEEEeHHHHHHhhcCCchhhhhhcccHHHHHhccccccccccCcCCCCCCcceeEEEEECCCC
Confidence 99999999999885579999999999999999999999999999999999876542379999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCceeEEEEEEEEcC-CCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 356 TENNLCEVVRGVAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 356 ~~~~i~~~Ir~~~g~lle~V~l~D~y~g-~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
++++|+++||+++|++||+|+|||+|+| ++||||+||||+|||+|||||++|||+++++|+++|+++||++||
T Consensus 329 ~~~~i~~~Ir~~~g~lle~V~lfD~Y~g~k~GkkSl~~Rl~yrs~erTLTdeEIn~i~~kI~~~L~~klgv~LR 402 (402)
T PLN02788 329 TENNLCEVVRGIAGDLVEEVKLIDNFTNPKKGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR 402 (402)
T ss_pred CHHHHHHHHHHhCcCeEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999998
No 2
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-96 Score=712.28 Aligned_cols=377 Identities=58% Similarity=1.021 Sum_probs=352.4
Q ss_pred CCCCCCCCccEEEECCEEeccCccccCCCCCCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCC
Q 014218 46 KKKWRPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCP 125 (428)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~p 125 (428)
..+...+....++++|++|. + |.|+|+|++|..++||++|....||+++++++|.+++++.+.+-|+.+..++|
T Consensus 28 ~~~~~~~~v~~~e~~g~~~~-----~-d~~~Nv~~~i~~~~gr~lh~~~~hplg~lr~~i~~~f~~~~~~~fs~~~~~sp 101 (436)
T KOG2783|consen 28 RESRKIVKVSVVELNGKKYA-----T-DAWSNVTPSILSLLGRNLHQKESHPLGILRQRIEDYFYKTYRNLFSIFENESP 101 (436)
T ss_pred hcCcccCCccceeecceecC-----C-cccccCChhhhhhcccchhhhccCchhHHHHHHHHHHHHhhcccchhccCCCc
Confidence 33444566678999999654 4 55589999999999999999999999999999999999998778899998999
Q ss_pred ccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEEEEeeEEecCCCCCCCCcceEEEEEEE
Q 014218 126 IVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVS 204 (428)
Q Consensus 126 vvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~ 204 (428)
+||+.+|||+|++|+|||+|.++|+||.+..++||+|+++|+.+.++ +...+..+|||||+|++|++|||+||||+|++
T Consensus 102 vvt~~qnfdsl~~p~dh~sr~ksdtyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdeidsthypvfhq~eg~~ 181 (436)
T KOG2783|consen 102 VVTTYQNFDSLLFPADHVSRSKSDTYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEGVR 181 (436)
T ss_pred eeehhhhcccccCcccccccCcCCceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccccccccceecccccee
Confidence 99999999999999999999999999999999999999999999999 88999999999999999999999999999999
Q ss_pred EEecC--------------CccccC-------------cccccccHHHHHHHHHHHHHHhcc-cceeEEeeccCCCCCCC
Q 014218 205 IFYPD--------------EWGAAG-------------LDATEYAAKDLKRCLEGLARHLFG-AVEMRWVDTYFPFTNPS 256 (428)
Q Consensus 205 ~~~~~--------------~w~~~~-------------~~~~~~~f~dLKg~Le~Ll~~L~~-~~~~~~~~~~~p~~hPg 256 (428)
++.+. .|+.++ .++.++...++|..++.|..+|++ .++++|+.++|||+||+
T Consensus 182 ~~s~~~l~~~~~d~~~ve~~~~~s~~~~~~~~kq~~~t~e~~~~~~~~lk~~l~~L~~~Lf~~~~~~rwV~~yfpft~ps 261 (436)
T KOG2783|consen 182 LWSKDELFGKKPDGKNVAELFSGSSATLRSPNKQEKHTLEATKLAEQHLKQTLEGLCDELFGKEVEYRWVDAYFPFTHPS 261 (436)
T ss_pred EEecchhhcccccccceeccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhccchhheeheeeEcccCCCC
Confidence 87532 243332 234556678999999999999998 67899999999999999
Q ss_pred ceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCC
Q 014218 257 YELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKP 336 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp 336 (428)
++++|++.|+|++++|||++.+.+++..|+.+.++|||++|||||||++|+|||||||||.|+||++||..+++.++|||
T Consensus 262 ~eleI~~~~~wlevlgcgvi~~~il~~ag~~~~igwafglgLerLAMll~~IpDiRlfWs~DeRFlkqF~~g~I~~~FKp 341 (436)
T KOG2783|consen 262 WELEIYFKGEWLEVLGCGVMRQRLLKRAGLNNYIGWAFGLGLERLAMLLFDIPDIRLFWSFDERFLKQFSPGKIEPKFKP 341 (436)
T ss_pred eEEEEEecCCcHhhhccchhHHHHHhhccccceeeeeeeccHHHHHHHHhcCcchheeeccchHHHHhcCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCcceeeeEEecC--CCCHHHHHHHHHhhcCCceeEEEEEEEEcC-CCCCeeEEEEEEEecCCCCCCHHHHHHHHH
Q 014218 337 FSKYPPCYKDMSFWINE--SFTENNLCEVVRGVAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQW 413 (428)
Q Consensus 337 ~SkyP~~~RDiSf~v~~--~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g-~~gkkSl~~ri~yrs~drTLt~eEV~~~~~ 413 (428)
+||||+|++|||||+|+ +++++|++++||.++||+||+|+|+|.|+| |+||+|+||||+||+|||+||++|||.+|+
T Consensus 342 ~SkYP~c~~DiSFWl~~~~~f~endf~~viR~V~gDlVesV~lid~F~hpKtgk~S~CYRi~YrsmeR~LTq~EVn~iq~ 421 (436)
T KOG2783|consen 342 YSKYPPCYKDISFWLPQDKGFDENDFYDVIRTVAGDLVESVKLIDQFTHPKTGKTSLCYRIVYRSMERALTQEEVNSIQS 421 (436)
T ss_pred cccCCCcccceeEeeccccCCChhHHHHHHHHHhhhhhhhhhhhhhccCCccCceeeEEEEehHhhhhhhhHHHHHHHHH
Confidence 99999999999999988 899999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccC
Q 014218 414 NVREQVQSKLNVVLR 428 (428)
Q Consensus 414 ~i~~~l~~~l~~~LR 428 (428)
+|++++++.|+|++|
T Consensus 422 q~r~~~~~~l~VelR 436 (436)
T KOG2783|consen 422 QIRSELVQSLGVELR 436 (436)
T ss_pred HHHHHHHHhhCeecC
Confidence 999999999999998
No 3
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=100.00 E-value=7.9e-91 Score=705.68 Aligned_cols=368 Identities=44% Similarity=0.874 Sum_probs=331.5
Q ss_pred ccEEEECCEEeccCccccCCCCCCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccC-----CCCcEEEccCCCccC
Q 014218 54 ASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNY-----PNKFNKFDDLCPIVS 128 (428)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~-----~~gf~e~~~~~pvvs 128 (428)
+..++++|+ +|.+|+|++||||+|++++||++|.|..||+++++++|+++|.+++ ..||+.++.++|++|
T Consensus 5 ~~~~~~~~~-----~~~~d~~~~n~~~~i~~~~~r~~~~~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt 79 (460)
T TIGR00469 5 PPHLEINGI-----KYATDGQTTNVTDKIIKLTDANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVT 79 (460)
T ss_pred CCeEEECCe-----eccCCcccCCCChHHHHhhccCccCCCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccc
Confidence 356999999 4668887669999999999999999999999999999999999862 137999987789999
Q ss_pred chhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-c-----CC--eEEEEeeEEecCCCCCCCCcceEEE
Q 014218 129 VKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-E-----HN--HFLVTGDVYRRDSIDSTHYPVFHQM 200 (428)
Q Consensus 129 ~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~-----~~--~~FEiG~Vyr~d~~d~~~~p~f~q~ 200 (428)
.++|||+|++|+|||+|.+.|+||.++..+||||++||+.++++ + +. +++..|+|||+|++|++|+|+||||
T Consensus 80 ~~~NFD~Ln~P~dHPaR~~~DT~Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~ 159 (460)
T TIGR00469 80 TMENFDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQA 159 (460)
T ss_pred hhhhhhhcCCCCCCcccCcccceEecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceee
Confidence 99999999999999999999999999999999999999999998 2 33 3999999999999999999999999
Q ss_pred EEEEEEecCCcc--cc----------------------C-----------------------cccccccHHHHHHHHHHH
Q 014218 201 EGVSIFYPDEWG--AA----------------------G-----------------------LDATEYAAKDLKRCLEGL 233 (428)
Q Consensus 201 ~g~~~~~~~~w~--~~----------------------~-----------------------~~~~~~~f~dLKg~Le~L 233 (428)
+|++++...... .. + .+..++...|||++|+.+
T Consensus 160 EG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~LK~~L~~~ 239 (460)
T TIGR00469 160 DGAAIRKRTKADLFEKEPGYIEKFEEDIRGTEADLNKENVKIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSIEGI 239 (460)
T ss_pred EEEEEeccccccccccccchhhhhhhhhhhccccccccCcceeccCcccccccccchhhhccHHHHHHHHHHHHHHHHHH
Confidence 999997522110 00 0 001122348999999999
Q ss_pred HHHhccc-c---------------eeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCc--eEEEEE
Q 014218 234 ARHLFGA-V---------------EMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNN--VAWAFG 295 (428)
Q Consensus 234 l~~L~~~-~---------------~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~--v~~afE 295 (428)
+++||+. . +++|.+++|||++||++++|.++|+||+++|||++||+|++++|++.+ +|||||
T Consensus 240 ~~~lFg~~~~~~~~~~~~~~~~~~~~r~~ps~fPftePs~evdi~~~g~WiEi~gcG~v~p~vl~~~g~~~~~~~g~AfG 319 (460)
T TIGR00469 240 TKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPFTAPSWEIEIWFKDEWLELCGCGIIRHDILLRAGVHPSETIGWAFG 319 (460)
T ss_pred HHHHhchhhhhhccccccccCccceEEEEeccCCCCCcceEEEEEECCeeEEEeeeccCcHHHHHHcCCCccceEEEEEE
Confidence 9999973 2 789999999999999999999999999999999999999999999765 489999
Q ss_pred echhHHHHhhcCCccchhccccchhhhhhcccC---CCCccCCCCCCCCCcceeeeEEecCCCC------HHHHHHHHHh
Q 014218 296 LGLERLAMVLFDIPDIRLFWSSDERFTSQFSQG---QLGIKFKPFSKYPPCYKDMSFWINESFT------ENNLCEVVRG 366 (428)
Q Consensus 296 L~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~---~~~~~fkp~SkyP~~~RDiSf~v~~~~~------~~~i~~~Ir~ 366 (428)
||||||+|++|||||||+||+.|.||+.||..+ ++ .+|+|+||||+|+||||||||++++ +++|+++||+
T Consensus 320 iGleRlaMl~~gi~DiR~~~~~d~rfl~qf~~~~~~~~-~~fkpiSKfP~v~RDISfvV~~~v~~~~~~~~~dI~d~Ir~ 398 (460)
T TIGR00469 320 LGLDRIAMLLFDIPDIRLFWSNDEGFLRQFSEGDLHLI-PKFKPISHHPGCFNDLAFWLPEDIEDDAGFHENDFMDIIRN 398 (460)
T ss_pred ecHHHHHHHHcCccHHHHHhcccHHHHHhhcccccccc-cccCcCCCCCCccccEEEEecCCCcccccccHHHHHHHHHH
Confidence 999999999999999999999999999999655 33 6799999999999999999999877 8999999999
Q ss_pred hcCCceeEEEEEEEEcC-CCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q 014218 367 VAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVL 427 (428)
Q Consensus 367 ~~g~lle~V~l~D~y~g-~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~L 427 (428)
+++++|++|+|||+|+| ++||||+||||+||++|||||++|||+++++|+++|+++||++|
T Consensus 399 ~~g~lle~V~LfDvY~g~k~GkKSLa~RL~yrs~eRTLTdeEVn~i~~kIi~~L~kkfga~~ 460 (460)
T TIGR00469 399 IAGDLVEQIKLVDKFKHPKTGKKSMCFRINYQHMDRNLTNAEVNEIHDMIASALVDEFNVEI 460 (460)
T ss_pred hCcCeEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999 89999999999999999999999999999999999999999986
No 4
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=100.00 E-value=9.9e-53 Score=404.07 Aligned_cols=222 Identities=43% Similarity=0.723 Sum_probs=201.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-------cCCccc
Q 014218 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-------DSQTVL 159 (428)
Q Consensus 87 ~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-------~e~~~L 159 (428)
++.++.|+.||++.+.++|++.|.++ ||+|++ .+++.+.++|||+|++|+|||+|...|++|. ++..+|
T Consensus 8 ~~~~~~G~~hp~~~~~~~i~~~~~~~---Gf~e~~-~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vL 83 (247)
T PF01409_consen 8 GKRFTPGRLHPITKFIREIRDIFVGM---GFQEVE-GPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVL 83 (247)
T ss_dssp CTTCCCSBTSHHHHHHHHHHHHHHCT---TSEEES-TTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHC---CCeEee-CCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhh
Confidence 67889999999999999999999999 999997 3555688999999999999999999998888 999999
Q ss_pred ccchhHHHHHHH-h---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHH
Q 014218 160 RCHTSAHQAELL-K---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235 (428)
Q Consensus 160 RtsL~~~ll~~l-~---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~ 235 (428)
||||+|++++++ . .+.++||+|+|||+|++|.+|+|+|||++|+.+. ..++|.+||++|+.+++
T Consensus 84 RThts~~~~~~l~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~------------~~~~f~~Lk~~l~~l~~ 151 (247)
T PF01409_consen 84 RTHTSPGQLRTLNKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVD------------KNVTFEDLKGTLEELLK 151 (247)
T ss_dssp -SSTHHHHHHHHTTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEE------------TTE-HHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEe------------cccchhHHHHHHHHHHH
Confidence 999999999999 3 7899999999999999999999999999999763 24678999999999999
Q ss_pred Hhcc-cceeEEeeccCCCCCCCceEEEEE----CCeeEEEeeeeeccHHHHHHcCC--CCceEEEEEechhHHHHhhcCC
Q 014218 236 HLFG-AVEMRWVDTYFPFTNPSYELEIFF----KENWLEVLGCGVTEQEILKRSGK--LNNVAWAFGLGLERLAMVLFDI 308 (428)
Q Consensus 236 ~L~~-~~~~~~~~~~~p~~hPg~~a~I~~----~g~~iGvlG~G~ihP~vl~~~gi--~~~v~~afEL~Le~L~m~~~~i 308 (428)
+|++ +.++++.+++|||++||++++|++ +++|+++.|||++||+|++++|+ +.+ +||||+|||||+|+++||
T Consensus 152 ~lfG~~~~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid~~~~-~~A~G~GleRlam~~~gi 230 (247)
T PF01409_consen 152 ELFGIDVKVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGIDEEYP-GFAFGLGLERLAMLKYGI 230 (247)
T ss_dssp HHHTTTEEEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--TTSE-EEEEEEEHHHHHHHHHT-
T ss_pred HHhhcccceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcCccce-EEEecCCHHHHHHHHcCC
Confidence 9944 557999999999999999999999 88999999999999999999999 666 699999999999999999
Q ss_pred ccchhccccchhhhhhc
Q 014218 309 PDIRLFWSSDERFTSQF 325 (428)
Q Consensus 309 ~dirl~ws~d~rf~~qf 325 (428)
+|||+||+.|.||++||
T Consensus 231 ~diR~~~~~d~~fl~qf 247 (247)
T PF01409_consen 231 PDIRLLYSNDLRFLRQF 247 (247)
T ss_dssp SSGGHHHTTTHHHHGGG
T ss_pred chHHHHhcCcHhHHhcC
Confidence 99999999999999997
No 5
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-52 Score=449.39 Aligned_cols=291 Identities=20% Similarity=0.301 Sum_probs=246.8
Q ss_pred CChHHHHHHHHHHHHhccCCCCcEEEccCCCccCc-hhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-
Q 014218 95 QHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSV-KQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 95 ~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~-~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~- 172 (428)
.++.+.+++.+|+.|.++ ||+|++ ++.+++ +.++..++..++ ++++ .||+++++++||++|+|+++++++
T Consensus 350 ~~~~~~~~r~vr~~l~~~---G~~Evi--tysl~s~e~~~~~~~~~~~-~~~l--~NPiS~e~s~mR~sLlp~LL~~~~~ 421 (650)
T COG0072 350 LTPLQKFRRKVRRALVGL---GFQEVI--TYSLTSPEEAKLFGLENDE-ALEL--ANPISEEYSVLRTSLLPGLLEALSY 421 (650)
T ss_pred CChHHHHHHHHHHHHHhC---CcceEe--eeccCCHHHHHHhccCCCc-ceEe--cCCcchhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999 999997 777655 455555544443 6666 999999999999999999999996
Q ss_pred ------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEe
Q 014218 173 ------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWV 246 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~ 246 (428)
+++++||+|+||..++................. ....|..+ ..++|+++||.|++++..++. .+.+.
T Consensus 422 N~~r~~~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~-~~~~w~~~----~~v~f~d~Kg~ve~ll~~lg~--~~~~~ 494 (650)
T COG0072 422 NKNRKNPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLA-GEESWQGK----RPVDFYDAKGDLEALLEALGV--EYEFE 494 (650)
T ss_pred hhccCCCCeeEEEeeeeEecCCcccchhHHHHHHhhccc-cccccccC----CCcCHHHHHHHHHHHHHHhCC--ceEEE
Confidence 459999999999987543211111111111111 26778764 478999999999999999985 45666
Q ss_pred eccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcc
Q 014218 247 DTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFS 326 (428)
Q Consensus 247 ~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~ 326 (428)
+..++++||||+|.|+++++.||++ |++||++++++|++.++ ++|||+++.+..
T Consensus 495 ~~~~~~~hpgrsA~I~~~~~~iG~i--GeiHP~vl~~~dl~~~~-~~fEi~l~~l~~----------------------- 548 (650)
T COG0072 495 PAEHPAFHPGRSAAIYLNKEVIGFI--GELHPEVLKEFDLPGPV-YVFEIDLDALLK----------------------- 548 (650)
T ss_pred EccCCCccCCceEEEEECCEEEEEE--eeeCHHHHHhcCCCCCe-EEEEEehhhhcc-----------------------
Confidence 7778899999999999997789999 99999999999999997 899999876542
Q ss_pred cCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC--CCCCeeEEEEEEEecCCCCCC
Q 014218 327 QGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN--KKGMTSHCYRIAYRSMERSLT 404 (428)
Q Consensus 327 ~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g--~~gkkSl~~ri~yrs~drTLt 404 (428)
.....|+|+||||++.||||||||+++++++|+++|+++++++|++|+|||+|+. ++|+||+|||++||+++||||
T Consensus 549 --~~~~~~~~~s~~pa~~RDia~~v~~~v~~~~i~~~i~~~~~~~l~~v~lfDvy~~~~~~~~ks~a~~~~~~~~~rTLt 626 (650)
T COG0072 549 --RKKPAYKPISKFPAVRRDIALVVDEDVPAGDIVKAIKKAGGKLLESVNLFDVYQKGLGEGKKSLAIRLTFQDPERTLT 626 (650)
T ss_pred --ccccccCCCCCCCcccceeEEEecCCCCHHHHHHHHHHhCcceEEEEEEEEEeecccCCCceEEEEEEEEECCCCCCC
Confidence 1136799999999999999999999999999999999999999999999999993 799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccC
Q 014218 405 DEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 405 ~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
|+||++++++++++|++++|++||
T Consensus 627 deev~~~~~~~~~~l~~~~~~~lr 650 (650)
T COG0072 627 DEEVNALVNKIVEALKEKFGAELR 650 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcC
Confidence 999999999999999999999998
No 6
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=3.2e-51 Score=451.77 Aligned_cols=293 Identities=19% Similarity=0.265 Sum_probs=247.6
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh
Q 014218 93 RNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 93 ~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~ 172 (428)
+..++...+++++|+.|.++ ||+|+. ++.+++.+..+.++.+. .++++ .||+++++++||+||+|+++++++
T Consensus 484 ~~~~~~~~~~~~ir~~L~~~---Gf~Ev~--tysf~~~~~~~~~~~~~-~~i~l--~NPis~e~~~lR~SLlp~LL~~~~ 555 (791)
T PRK00629 484 GGLTEAQRLLRRLRRALAAL---GYQEVI--TYSFVSPEDAKLFGLNP-EPLLL--LNPISEELSVMRTSLLPGLLEAVA 555 (791)
T ss_pred CCCCHHHHHHHHHHHHHHHC---CCcEEe--ccccCCHHHHHhcCCCC-CeEEE--eCCCchHHHHHHHhhHHHHHHHHH
Confidence 46788899999999999999 999997 67766554455566543 55555 999999999999999999999996
Q ss_pred -------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEe---cCCccccCcccccccHHHHHHHHHHHHHHhcccce
Q 014218 173 -------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFY---PDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVE 242 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~---~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~ 242 (428)
.++++||+|+||.+++ ..+.+....++.+.. ...|..+ ..++|+++||.|+.++..++.. .
T Consensus 556 ~N~~~~~~~i~lFEiG~Vf~~~~----~~~~e~~~la~~~~g~~~~~~w~~~----~~~df~~~Kg~le~ll~~l~~~-~ 626 (791)
T PRK00629 556 YNLNRGNKDVALFEIGRVFLPDG----DLPREPEHLAGVLTGNRVEESWGGK----RPVDFFDLKGDVEALLEALGLP-E 626 (791)
T ss_pred HHHhCCCCCEeEEeeeeeeCCCC----CCCcchhEEEEEEECCCcccccccc----CCCCHHHHHHHHHHHHHHcCCC-c
Confidence 5799999999997642 123334444444432 2456542 3478999999999999988754 3
Q ss_pred eEEee-ccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhh
Q 014218 243 MRWVD-TYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERF 321 (428)
Q Consensus 243 ~~~~~-~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf 321 (428)
+.+.+ ...|++|||++|+|+++|+.+|++ |++||++++++|++.++ ++|||+|+.|...
T Consensus 627 ~~~~~~~~~~~~hPg~sA~I~~~g~~iG~i--G~lhP~v~~~~~l~~~v-~~~Ei~l~~l~~~----------------- 686 (791)
T PRK00629 627 VEFVAEFEAAALHPGRSAEIYLDGKVIGFI--GELHPKVLKKLDLPGRT-YVFELDLDALLEA----------------- 686 (791)
T ss_pred eeEeecCCCcCcCCceEEEEEECCEEEEEE--EEECHHHHHHcCCCCCE-EEEEEEHHHhhhh-----------------
Confidence 55655 667888999999999999999999 99999999999999996 8999999987531
Q ss_pred hhhcccCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEEEEec
Q 014218 322 TSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRIAYRS 398 (428)
Q Consensus 322 ~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri~yrs 398 (428)
.....+|+|+||||++.|||||+||+++++++|.++|++.++++|++|++||+|+| ++|+||+|||++||+
T Consensus 687 ------~~~~~~~~~~skfP~v~RDls~vv~~~v~~~~i~~~i~~~~~~ll~~v~lfDvY~g~~i~~gkkSla~rl~~r~ 760 (791)
T PRK00629 687 ------ARKLPKYKPISKFPAVRRDLALVVDEDVPAADILKAIKKAGGKLLESVELFDVYEGKGIGEGKKSLAFRLTFQD 760 (791)
T ss_pred ------hcccCCCCCCCCCCCccccEEEEECCCCCHHHHHHHHHHhCcceEEEEEEEEEeCCCCCCCCceEEEEEEEEEC
Confidence 01123699999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 399 MERSLTDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 399 ~drTLt~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
+|||||++|||+++++|++.|+++||++||
T Consensus 761 ~~rTLtd~eI~~~~~~ii~~L~~~~~~~LR 790 (791)
T PRK00629 761 PDRTLTDEEINAAMDKIVAALEEKFGAELR 790 (791)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEec
Confidence 999999999999999999999999999998
No 7
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=1.1e-50 Score=441.30 Aligned_cols=291 Identities=19% Similarity=0.294 Sum_probs=241.6
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHH
Q 014218 92 KRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 92 ~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l 171 (428)
.+..+|...+++++|+.|.++ ||+|+. ++.+++.+.+ . +.++++ .||+++++++||++|+|++++++
T Consensus 394 ~~~~~~~~~~~~~ir~~L~~~---Gf~Evi--tysf~s~~~~-----~-~~~i~l--~NPiS~e~s~lR~SLlpgLL~~~ 460 (704)
T CHL00192 394 IGRLDIDYNTRDKIRSYLRNL---GLTELI--HYSLVKQESF-----S-KNEIKL--KNPLIKDYSTLRSSLLPGLIEAV 460 (704)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCceEe--cccccChhhc-----C-CCcEEE--eCCCchHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999 999997 5555444322 1 235665 99999999999999999999999
Q ss_pred h-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEe----cCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 172 K-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFY----PDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 172 ~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~----~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
+ .++++||+|+||.++.. .. .+....+..+.. +..|..+. ..+||+++||.||.++..++..
T Consensus 461 ~~N~~r~~~~~rlFEiG~Vf~~~~~---~~-~e~~~la~~~~g~~~~~~~w~~~~---~~~dF~d~Kg~le~ll~~l~i~ 533 (704)
T CHL00192 461 QENLKQGNSTLEGFEIGHVFNLDSS---SI-IEETELAGGIFGGIDIRSSWSEKA---QSLNWFEAKGIIENFFQKLNLP 533 (704)
T ss_pred HHHHhcCCCCEeEEEeeeeEcCCCc---cc-cccceEEEEEECCCcCccccCCCC---CccCHHHHHHHHHHHHHHCCCc
Confidence 6 58999999999976432 12 122333333332 24565532 4679999999999999988754
Q ss_pred ceeEEee----ccCCCCCCCceEEEEE-CCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhcc
Q 014218 241 VEMRWVD----TYFPFTNPSYELEIFF-KENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFW 315 (428)
Q Consensus 241 ~~~~~~~----~~~p~~hPg~~a~I~~-~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~w 315 (428)
+.+.+ ...|++|||++|+|++ +|+.+|++ |++||++++++|++.++ ++|||+|+.|....
T Consensus 534 --~~~~~~~~~~~~~~~hPgrsA~I~~~~g~~iG~i--G~lhP~v~~~~~l~~~v-~~~Ei~l~~l~~~~---------- 598 (704)
T CHL00192 534 --IYWKKYSDLDEKINFHPYCTSEIFLSNGQKIGIF--GQLHPLLANKLNLNTEI-YLFEINLDILQYSI---------- 598 (704)
T ss_pred --EEEEeccccccCcCCCCCcEEEEEEECCcEEEEE--EEECHHHHHHcCCCCCe-EEEEEEHHHhhhhh----------
Confidence 44544 3568889999999999 78989999 99999999999999996 89999999875320
Q ss_pred ccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEE
Q 014218 316 SSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCY 392 (428)
Q Consensus 316 s~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ 392 (428)
......+|+|+|+||++.|||||+||+++++++|.++|++.++++|++|++||+|+| ++|+||+||
T Consensus 599 -----------~~~~~~~~~~~skfP~v~RDia~vv~~~i~~~~i~~~i~~~~~~ll~~v~lfDvY~g~~i~~gkkSla~ 667 (704)
T CHL00192 599 -----------QQNNLISYQPYSSYPKIIRDLSFIIKKSISISKIKELIYQNGDNLLESITLFDYYKGKSIPNGHTSLGL 667 (704)
T ss_pred -----------ccccccccCCCCCCCCccceEEEEECCCCCHHHHHHHHHHhCcceEEEEEEEEEecCCCCCCCcEEEEE
Confidence 011113699999999999999999999999999999999999999999999999999 699999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 393 RIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 393 ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
|++||++||||||+||++++++|+++|+++||++||
T Consensus 668 ~l~~~~~~~TLtd~ei~~~~~~i~~~l~~~~~a~lR 703 (704)
T CHL00192 668 RLTFQSENKTLTNEEIDRIQQNLQKVLEKKLNAEIR 703 (704)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeC
Confidence 999999999999999999999999999999999998
No 8
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=100.00 E-value=2e-51 Score=406.53 Aligned_cols=222 Identities=38% Similarity=0.694 Sum_probs=206.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCccccccccccccCCcccccchhH
Q 014218 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSA 165 (428)
Q Consensus 87 ~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~ 165 (428)
|+..+.|..||++.+.++|++.|.++ ||+|+. +|.+ +.++|||.|++|+|||+|...|++|+++..+|||||+|
T Consensus 99 ~~~~~~G~~HPl~~~~~~Ir~if~~m---GF~ev~--gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp 173 (339)
T PRK00488 99 GRRIELGSLHPITQTIEEIEDIFVGM---GFEVAE--GPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSP 173 (339)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhC---CCEEEe--CCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcH
Confidence 56789999999999999999999999 999996 6655 66889999999999999999999999999999999999
Q ss_pred HHHHHHh---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc-cc
Q 014218 166 HQAELLK---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG-AV 241 (428)
Q Consensus 166 ~ll~~l~---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~-~~ 241 (428)
+++..+. .|+++|++|+|||+|.+|.+|+|.|||++|+.+. ..++|.|||++|+.+++.+++ +.
T Consensus 174 ~qir~L~~~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd------------~~vtf~dLK~~L~~fl~~~fg~~~ 241 (339)
T PRK00488 174 VQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVD------------KNISFADLKGTLEDFLKAFFGEDV 241 (339)
T ss_pred HHHHHHHhcCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEe------------CCCCHHHHHHHHHHHHHHHcCCCC
Confidence 9999996 6899999999999999999999999999999873 235789999999999999987 67
Q ss_pred eeEEeeccCCCCCCCceEEEEEC------------CeeEEEeeeeeccHHHHHHcCCCCc--eEEEEEechhHHHHhhcC
Q 014218 242 EMRWVDTYFPFTNPSYELEIFFK------------ENWLEVLGCGVTEQEILKRSGKLNN--VAWAFGLGLERLAMVLFD 307 (428)
Q Consensus 242 ~~~~~~~~~p~~hPg~~a~I~~~------------g~~iGvlG~G~ihP~vl~~~gi~~~--v~~afEL~Le~L~m~~~~ 307 (428)
++||.+++||||.||.+++|.+. ++||+++|||.+||+||++.|++.. .|||||+|+|||+|+.||
T Consensus 242 ~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gid~~~~~G~AfG~GleRlaMl~yg 321 (339)
T PRK00488 242 KIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYG 321 (339)
T ss_pred eEEecCCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCCCcccceEEEEeecHHHHHHHHhC
Confidence 89999999999999999999883 4699999999999999999999754 379999999999999999
Q ss_pred Cccchhccccchhhhhhc
Q 014218 308 IPDIRLFWSSDERFTSQF 325 (428)
Q Consensus 308 i~dirl~ws~d~rf~~qf 325 (428)
|+|||+||++|.||++||
T Consensus 322 i~DiR~~~~~D~rfl~qF 339 (339)
T PRK00488 322 IDDIRLFYENDLRFLKQF 339 (339)
T ss_pred CcHHHHHHhcCHhHHhcC
Confidence 999999999999999997
No 9
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=5.2e-50 Score=442.79 Aligned_cols=318 Identities=21% Similarity=0.281 Sum_probs=255.2
Q ss_pred ccccCCCCCCCChhHHhhcCCCCC-------------CCCCChHHHH-HHHHHHHHhccCCCCcEEEccCCCccCchhhh
Q 014218 68 DIVRDDPTNNVPDTIFTKLGMQLH-------------KRNQHPIGIL-KNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNF 133 (428)
Q Consensus 68 ~~~~~~~~~nv~~~i~~~~~r~l~-------------~~~~hPl~~l-~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nf 133 (428)
.|..| ...+..|++.+.|-+. .+..++.... ++++|+.|.++ ||+|+. ++.+++.+.+
T Consensus 452 ~~R~D---I~~~~DliEEI~R~yGydni~~~~p~~~~~~~~~~~~~~~~~~~r~~L~~~---Gf~Ev~--tysl~s~~~~ 523 (798)
T TIGR00472 452 SYRHD---ITIEEDLIEEIARIYGYDNIPAEPLSVSSKLNKNNENYLLLRKLRTLLVGL---GLNEVI--TYSLVSSEKA 523 (798)
T ss_pred CCccc---cccchhhHhhhhhhhCcccCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHC---CCcEEe--ccccCCHHHH
Confidence 55443 4667777766644221 2233444443 47999999999 999997 7776666556
Q ss_pred hhcCCCCCC-ccccccccccccCCcccccchhHHHHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 134 DDVLVPADH-VSRSYNDTYYVDSQTVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 134 d~L~~p~dh-p~r~~~~np~~~e~~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
+.++++.+. ++++ .||+++++++||+||+|+++++++ .++++||+|+||..++. + +.+....++.+
T Consensus 524 ~~~~~~~~~~~i~l--~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~---~-~~e~~~La~~~ 597 (798)
T TIGR00472 524 EKFNFPKLENLVEI--KNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL---G-VKEQLRLAILI 597 (798)
T ss_pred HhhcCCCCCceEEE--eCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC---C-cchhhEEEEEE
Confidence 667776543 5665 999999999999999999999986 57999999999976431 1 33344555544
Q ss_pred Ee---cCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEee-ccCCCCCCCceEEEEECCeeEEEeeeeeccHHHH
Q 014218 206 FY---PDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVD-TYFPFTNPSYELEIFFKENWLEVLGCGVTEQEIL 281 (428)
Q Consensus 206 ~~---~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~-~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl 281 (428)
.. ...|..++ ..++|+++||.|+.|+..++....+.+.+ ...|++|||++|.|+++|+.+|++ |++||+++
T Consensus 598 ~g~~~~~~~~~~~---~~~df~d~Kg~le~ll~~l~~~~~~~~~~~~~~~~~hpg~sA~I~~~~~~iG~i--G~lhP~v~ 672 (798)
T TIGR00472 598 SGEKNPSSWNHKE---EKVDFYDLKGDVESLLELLGLSDDVYFKNTAENEELHPGQSATIYLKGKKIGFI--GELHPEIA 672 (798)
T ss_pred ECCCCcccccCCC---CcCChHHHHHHHHHHHHHcCCCcceEEeecCCCCCCCCCcEEEEEECCEEEEEE--EEECHHHH
Confidence 42 24565532 35789999999999999887532233333 556788999999999999999999 99999999
Q ss_pred HHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHH
Q 014218 282 KRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLC 361 (428)
Q Consensus 282 ~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~ 361 (428)
+++|++.++ ++|||+|+.|... .....+|+|+|+||++.|||||++|++++++++.
T Consensus 673 ~~~~l~~~v-~~~Ei~l~~l~~~-----------------------~~~~~~~~~~sk~P~~~RDls~~v~~~v~~~~i~ 728 (798)
T TIGR00472 673 KKYDLKEPT-FVAELDLDRLLES-----------------------LKKVPKYRPISKFPAVTRDISFLVPKDVPANEII 728 (798)
T ss_pred HHcCCCCCe-EEEEEEHHHHhhh-----------------------hcccCCcCCCCCCCCcceeEEEEECCCCCHHHHH
Confidence 999999996 8999999987532 0111369999999999999999999999999999
Q ss_pred HHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 362 EVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 362 ~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
++|++.++++|++|++||+|+| ++|+||+|||++||++|||||++||++++++|++.|+++||++||
T Consensus 729 ~~i~~~~~~ll~~v~lfDvY~g~~i~~gkkSlt~rl~~~~~~rTLtd~ei~~~~~~i~~~l~~~~g~~lR 798 (798)
T TIGR00472 729 KLIKKSGLELLEEVELFDVYEGKNIGEGKKSLALRLVLRDKERTLTDEEINKIVEKVLNLLKEKLGAELR 798 (798)
T ss_pred HHHHHhCcceEEEEEEEEEeCCCCCCCCceEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeC
Confidence 9999999999999999999999 589999999999999999999999999999999999999999998
No 10
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-48 Score=382.71 Aligned_cols=221 Identities=39% Similarity=0.712 Sum_probs=201.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCccccccccccccCC---cccccc
Q 014218 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYNDTYYVDSQ---TVLRCH 162 (428)
Q Consensus 87 ~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~np~~~e~---~~LRts 162 (428)
|+....|..||+..+.++|+++|.++ ||+++. .|.| +..+|||.|++|+|||+|...|++|.+.. .+||||
T Consensus 102 ~~~~~~G~~Hpl~~~~e~i~~iF~~m---GF~~~~--gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTH 176 (335)
T COG0016 102 GRRIYPGSLHPLTQTIEEIEDIFLGM---GFTEVE--GPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTH 176 (335)
T ss_pred CccCCCCCcChHHHHHHHHHHHHHHc---Cceecc--CCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeeccc
Confidence 45677799999999999999999999 999987 5554 67899999999999999999999999987 499999
Q ss_pred hhHHHHHHHh---c-CCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 163 TSAHQAELLK---E-HNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 163 L~~~ll~~l~---~-~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
++|.+...+. + |+++|-+|+|||+|..|.||.|.|||++|+++. ..+.|.||||+|+.++..+|
T Consensus 177 Ts~vq~R~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd------------~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 177 TSPVQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVD------------KNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred CcHhhHHHHHhCCCCCceEecccceecCCCCCcccchheeeeEEEEEe------------CCccHHHHHHHHHHHHHHhc
Confidence 9999999997 3 999999999999999999999999999998773 24578999999999999999
Q ss_pred cc-ceeEEeeccCCCCCCCceEEEEEC--CeeEEEeeeeeccHHHHHHcCC-CCc-eEEEEEechhHHHHhhcCCccchh
Q 014218 239 GA-VEMRWVDTYFPFTNPSYELEIFFK--ENWLEVLGCGVTEQEILKRSGK-LNN-VAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 239 ~~-~~~~~~~~~~p~~hPg~~a~I~~~--g~~iGvlG~G~ihP~vl~~~gi-~~~-v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+. .++||.++|||||.||.+++|++. |+||+++|||++||+||++.|+ +.+ .|||||||+|||+|++|||+|||.
T Consensus 245 g~~~~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAMLkygI~DIR~ 324 (335)
T COG0016 245 GEDVKVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAMLKYGIPDIRD 324 (335)
T ss_pred CCCcceEeecCCCCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCCCCcceEEEEeecHHHHHHHHhCCcHHHH
Confidence 74 479999999999999999999998 4599999999999999999995 444 478999999999999999999999
Q ss_pred ccccchhhhhh
Q 014218 314 FWSSDERFTSQ 324 (428)
Q Consensus 314 ~ws~d~rf~~q 324 (428)
||+.|.||+.|
T Consensus 325 l~~~D~rfl~q 335 (335)
T COG0016 325 LYENDLRFLRQ 335 (335)
T ss_pred HHhccchhhcC
Confidence 99999999875
No 11
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=100.00 E-value=4.6e-45 Score=374.51 Aligned_cols=232 Identities=28% Similarity=0.464 Sum_probs=210.5
Q ss_pred CCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccccc-
Q 014218 76 NNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVD- 154 (428)
Q Consensus 76 ~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~- 154 (428)
.++.+..++..|+.++.|..||+.++++.|+++|.++ ||+|+.+.++|.|..+|||.|++|+|||+|...|++|++
T Consensus 201 ~~fk~Yn~~a~g~~~~~G~~HPl~~~~~ei~~if~~m---GF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~ 277 (492)
T PLN02853 201 LEFKEYNFNALGAPPEGGHLHPLLKVRQQFRKIFLQM---GFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKA 277 (492)
T ss_pred CCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcC
Confidence 4677888888899999999999999999999999999 999995456778889999999999999999999999998
Q ss_pred --------------------------------------CCcccccchhHHHHHHHh-------cCCeEEEEeeEEecCCC
Q 014218 155 --------------------------------------SQTVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSI 189 (428)
Q Consensus 155 --------------------------------------e~~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~ 189 (428)
+..+||||++|++...+. .+.++|-+|+|||+|.+
T Consensus 278 ~~~~~~~p~~~~erVk~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~i 357 (492)
T PLN02853 278 PATTRQLPEDYVERVKTVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAV 357 (492)
T ss_pred ccccccCcHHHHHHHHHHHhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCC
Confidence 468999999999988886 47899999999999999
Q ss_pred CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEEC--Cee
Q 014218 190 DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFK--ENW 267 (428)
Q Consensus 190 d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~--g~~ 267 (428)
|++|+|+|||++|+++. ..+++.+|+|+++.++..++. .+++|.++|||||.||.++++++. |+|
T Consensus 358 DatH~~eFhQ~EG~vvd------------~~~t~~~L~g~l~~f~~~lg~-~~~RfrP~yfPfTEPS~Ei~v~~~~~gkW 424 (492)
T PLN02853 358 DRTHLAEFHQVEGLVCD------------RGLTLGDLIGVLEDFFSRLGM-TKLRFKPAYNPYTEPSMEIFSYHEGLKKW 424 (492)
T ss_pred CcccCccceeEEEEEEe------------CCCCHHHHHHHHHHHHHHcCC-ceEEEecCCCCCCCCeEEEEEEecCCCCE
Confidence 99999999999999872 246789999999999999854 689999999999999999999875 679
Q ss_pred EEEeeeeeccHHHHHHcCCCCce-EEEEEechhHHHHhhcCCccchhccc--cchhhhh
Q 014218 268 LEVLGCGVTEQEILKRSGKLNNV-AWAFGLGLERLAMVLFDIPDIRLFWS--SDERFTS 323 (428)
Q Consensus 268 iGvlG~G~ihP~vl~~~gi~~~v-~~afEL~Le~L~m~~~~i~dirl~ws--~d~rf~~ 323 (428)
|+++|||++||+|++++|++.++ ++||||+|||++|+.|||+|||.|++ .|-.++.
T Consensus 425 iEi~g~Gm~rpevl~~~Gi~~~~~~~A~GlGleRlaMl~ygi~DIR~l~~~k~Dl~~lr 483 (492)
T PLN02853 425 VEVGNSGMFRPEMLLPMGLPEDVNVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIK 483 (492)
T ss_pred EEEecCcCcCHHHHHhCCCCCcceEEEEEecHHHHHHHHhCCcHHHHHhCCCCCHHHHh
Confidence 99999999999999999996653 69999999999999999999999998 5666654
No 12
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=100.00 E-value=1.6e-43 Score=349.21 Aligned_cols=221 Identities=36% Similarity=0.658 Sum_probs=198.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccC-chhhhhhcCCCCCCccccccccccccCCcccccchhHH
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVS-VKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAH 166 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs-~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ 166 (428)
...+.|..||+..+.++|++.|.++ ||+|+. +|.+. ..+|||.|++|++||+|...+++++.+..+|||||+|+
T Consensus 64 ~~~~~g~~~p~~~~~~~ir~~l~~~---Gf~Ev~--~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ 138 (294)
T TIGR00468 64 TKIYPGSLHPLTRVIDEIRDIFLGL---GFTEEK--GPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAV 138 (294)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHC---CCEEee--CCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHH
Confidence 3456689999999999999999999 999997 66654 45899999999999999977788899999999999999
Q ss_pred HHHHHh----cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccce
Q 014218 167 QAELLK----EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVE 242 (428)
Q Consensus 167 ll~~l~----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~ 242 (428)
++++++ .++++||+|+||+++..+.+|.|.|||++|+.. + ..++|+|+||+|+.++..+++..+
T Consensus 139 ll~~l~~N~~~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~-------~-----~~~~f~dLKg~le~ll~~l~~~~~ 206 (294)
T TIGR00468 139 QLRTMEENEKPPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVI-------D-----KNVSFTNLKGFLEEFLKKMFGETE 206 (294)
T ss_pred HHHHHHhcCCCCceEEEecceEEcCCCCCccCChhhEEEEEEE-------C-----CCCCHHHHHHHHHHHHHHhCCCcc
Confidence 999997 468999999999998777789999999999843 1 246899999999999999987655
Q ss_pred eEEeeccCCCCCCCceEEEEE-CCe-eEEEeeeeeccHHHHHHcCCCC--ceEEEEEechhHHHHhhcCCccchhccccc
Q 014218 243 MRWVDTYFPFTNPSYELEIFF-KEN-WLEVLGCGVTEQEILKRSGKLN--NVAWAFGLGLERLAMVLFDIPDIRLFWSSD 318 (428)
Q Consensus 243 ~~~~~~~~p~~hPg~~a~I~~-~g~-~iGvlG~G~ihP~vl~~~gi~~--~v~~afEL~Le~L~m~~~~i~dirl~ws~d 318 (428)
+++.++++||+|||++++|++ +|+ |+++.|||+|||+|++++||+. ++ +|||||+|||+|+.|||+|||.|+++|
T Consensus 207 ~~~~~~~~p~~~Ps~e~~i~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~~~~v-~afel~lerl~m~~~~i~dir~~~~~d 285 (294)
T TIGR00468 207 IRFRPSYFPFTEPSAEIDVYCWEGKTWLEVLGAGMFRPEVLEPMGIDPTYPG-FAWGIGIERLAMLKYGIDDIRDLYEND 285 (294)
T ss_pred eeeccCCCCCCCCCEEEEEEEeCCCccEEEEEeccCcHHHHHHCCCCCCCeE-EEEEeeHHHHHHHHhCCcHHHHHHcCC
Confidence 778888999999999999999 776 8888788999999999999998 85 899999999999999999999999999
Q ss_pred hhhhhhcc
Q 014218 319 ERFTSQFS 326 (428)
Q Consensus 319 ~rf~~qf~ 326 (428)
.||++||+
T Consensus 286 ~~~l~~~~ 293 (294)
T TIGR00468 286 LRFLRQFK 293 (294)
T ss_pred hHHHhhcC
Confidence 99999984
No 13
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=100.00 E-value=3.2e-42 Score=355.33 Aligned_cols=227 Identities=27% Similarity=0.475 Sum_probs=205.4
Q ss_pred CCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccC
Q 014218 76 NNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDS 155 (428)
Q Consensus 76 ~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e 155 (428)
.+..++.++..|+.++.|..||+.++++.|+++|.++ ||+|+.+.+++.|..+|||.|++|+|||+|...|++|.++
T Consensus 209 ~~fk~yn~~~~~~~~~~g~~HPl~~~~~~i~~if~~m---GF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~ 285 (494)
T PTZ00326 209 AEFKEYNFNALGKKIGGGNLHPLLKVRREFREILLEM---GFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSK 285 (494)
T ss_pred CCcccceecCCCCCCCCCCCChHHHHHHHHHHHHHhC---CCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcC
Confidence 4667888888999999999999999999999999999 9999975457889999999999999999999999999974
Q ss_pred -----------------------------------------CcccccchhHHHHHHHh------------cCCeEEEEee
Q 014218 156 -----------------------------------------QTVLRCHTSAHQAELLK------------EHNHFLVTGD 182 (428)
Q Consensus 156 -----------------------------------------~~~LRtsL~~~ll~~l~------------~~~~~FEiG~ 182 (428)
..+||||+++++...+. .|.++|-+|+
T Consensus 286 ~~~~~~~~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigr 365 (494)
T PTZ00326 286 PETSKVNDLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDR 365 (494)
T ss_pred ccccccccCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCC
Confidence 57999999999999886 1789999999
Q ss_pred EEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEE
Q 014218 183 VYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIF 262 (428)
Q Consensus 183 Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~ 262 (428)
|||+|.+|++|+|+|||++|+++.. ...+.+|++++..++..++. .+++|.++|||||+||.+++++
T Consensus 366 VfR~d~~DatH~~eFhQ~Eg~vi~~------------~~s~~~L~~~l~~f~~~lG~-~~~RfrP~yfPfTEPS~Ev~v~ 432 (494)
T PTZ00326 366 VFRNETLDATHLAEFHQVEGFVIDR------------NLTLGDLIGTIREFFRRIGI-TKLRFKPAFNPYTEPSMEIFGY 432 (494)
T ss_pred EecCCCCCCCcCceeEEEEEEEEeC------------CCCHHHHHHHHHHHHHhcCC-CceEEecCCCCCCCCeeEEEEE
Confidence 9999999999999999999998742 23578999999999999975 5789999999999999999999
Q ss_pred EC--CeeEEEeeeeeccHHHHHHcCCCCce-EEEEEechhHHHHhhcCCccchhccccc
Q 014218 263 FK--ENWLEVLGCGVTEQEILKRSGKLNNV-AWAFGLGLERLAMVLFDIPDIRLFWSSD 318 (428)
Q Consensus 263 ~~--g~~iGvlG~G~ihP~vl~~~gi~~~v-~~afEL~Le~L~m~~~~i~dirl~ws~d 318 (428)
+. |+||++.|||.+||+|++++|++.++ ++||||+|||++|++|||+|||.|++.|
T Consensus 433 ~~~~gkWIEIgg~Gm~rpevL~~~Gi~~~~~~~A~GlGleRlaMi~ygi~DIR~l~~~~ 491 (494)
T PTZ00326 433 HPGLKKWVEVGNSGIFRPEMLRPMGFPEDVTVIAWGLSLERPTMIKYGIKNIRDLFGHK 491 (494)
T ss_pred ecCCCcEEEEeCcCccCHHHHHhcCCCCcceEEEEEecHHHHHHHHhCCcHHHHHhccC
Confidence 85 67999999999999999999996553 5999999999999999999999997764
No 14
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=100.00 E-value=1.8e-36 Score=318.43 Aligned_cols=230 Identities=32% Similarity=0.541 Sum_probs=202.9
Q ss_pred CCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCcccccccccccc
Q 014218 76 NNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYNDTYYVD 154 (428)
Q Consensus 76 ~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~np~~~ 154 (428)
.++.+..++..|+.+..+..||+..+.+.|++.|..+ ||+|+. +|+| +..+|||.|+.|+|||+|...|++|.+
T Consensus 213 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---Gf~e~~--~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~ 287 (489)
T PRK04172 213 KEFRPYNVKAPPPKIYPGKKHPYREFIDEVRDILVEM---GFEEMK--GPLVETEFWNFDALFQPQDHPAREMQDTFYLK 287 (489)
T ss_pred CCCccceeCCCCCCCCCCCCChHHHHHHHHHHHHHHC---CCEEee--CCeeeecCcccccccCCCCCCCCCccceEEEC
Confidence 3566777777889999999999999999999999999 999996 7877 678999999999999999999987765
Q ss_pred C---------------------------------------CcccccchhHHHHHHHh----cCCeEEEEeeEEecCCCCC
Q 014218 155 S---------------------------------------QTVLRCHTSAHQAELLK----EHNHFLVTGDVYRRDSIDS 191 (428)
Q Consensus 155 e---------------------------------------~~~LRtsL~~~ll~~l~----~~~~~FEiG~Vyr~d~~d~ 191 (428)
. ..+||+|++|+++..+. .++++||+|+|||++..+.
T Consensus 288 ~~~~~~~~~~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~ 367 (489)
T PRK04172 288 YPGIGDLPEELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDA 367 (489)
T ss_pred CcccccCcHHHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCc
Confidence 3 23899999999999886 6899999999999988788
Q ss_pred CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECC-eeEEE
Q 014218 192 THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKE-NWLEV 270 (428)
Q Consensus 192 ~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g-~~iGv 270 (428)
+|++.|+|+.++.+.. .++|+++||+++.++..+++. ++++.++++|++|||+++.|+++| +|+++
T Consensus 368 ~~l~Ef~ql~~~i~G~------------~~~f~elkg~l~~ll~~lGi~-~~~~~~~~~p~~~P~~~~~i~~~g~~w~ei 434 (489)
T PRK04172 368 THLPEFYQLEGIVMGE------------DVSFRDLLGILKEFYKRLGFE-EVKFRPAYFPFTEPSVEVEVYHEGLGWVEL 434 (489)
T ss_pred ccCCchheEEEEEEeC------------CCCHHHHHHHHHHHHHHhCCc-eEEEcCCcCCCCCCeEEEEEEECCCCeEEE
Confidence 8999999999887642 346899999999999999864 577888899999999999999955 46554
Q ss_pred eeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhh
Q 014218 271 LGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQ 324 (428)
Q Consensus 271 lG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~q 324 (428)
.+||++||+|++++||+.+| ++|||++|+|+|+.+||+|||.||+.|.+|+.|
T Consensus 435 G~~G~l~Pevl~~~gi~~~v-~~~el~le~l~m~~~~~~dir~l~~~d~~~~~~ 487 (489)
T PRK04172 435 GGAGIFRPEVLEPLGIDVPV-LAWGLGIERLAMLRLGLDDIRDLYSSDIEWLRE 487 (489)
T ss_pred EeccccCHHHHHHCCCCCce-EEEEEcHHHHHHHHhCCcHHHHHHhcChHHHhc
Confidence 44599999999999999996 899999999999999999999999999999875
No 15
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=100.00 E-value=6.2e-36 Score=283.65 Aligned_cols=201 Identities=40% Similarity=0.660 Sum_probs=169.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCch-hhhhhcCCCCCCccc-----cccccccccCCcccccchhHHHHH
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVK-QNFDDVLVPADHVSR-----SYNDTYYVDSQTVLRCHTSAHQAE 169 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~-~nfd~L~~p~dhp~r-----~~~~np~~~e~~~LRtsL~~~ll~ 169 (428)
||++.++++||+.|.++ ||+|+. ++++++. ++++.++++.++|.+ +...||+ +++||+||+|++++
T Consensus 1 ~~~~~~~~~ir~~L~~~---Gf~Ev~--tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~ 72 (218)
T cd00496 1 HPLNKVIEEIEDIFVSM---GFTEVE--GPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---RLLLRTHTSAVQAR 72 (218)
T ss_pred ChHHHHHHHHHHHHHHC---CCEEEe--CCcccccchhhhhcCCCCCCcccccCceEEECCCc---eEEEeccCcHHHHH
Confidence 79999999999999999 999997 6666554 689999887765431 2338998 99999999999999
Q ss_pred HHh---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc--ccceeE
Q 014218 170 LLK---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF--GAVEMR 244 (428)
Q Consensus 170 ~l~---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~--~~~~~~ 244 (428)
+++ .++++||+|+||++++.+..|+|.++++.++... ..++|+++||++|.++..++ .. +++
T Consensus 73 ~l~~N~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g------------~~~df~dlkg~ve~ll~~l~~~~~-~~~ 139 (218)
T cd00496 73 ALAKLKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVD------------KGLTFADLKGTLEEFAKELFGPIT-KVR 139 (218)
T ss_pred HHHhcCCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEEC------------CCCCHHHHHHHHHHHHHHhcCCCc-eeE
Confidence 998 6899999999999876555677866655554332 23589999999999999998 32 356
Q ss_pred EeeccCCCCCCCceEEEEECC----eeEEEeeeeeccHHHHHHcCC--CCceEEEEEechhHHHHhhcCCccchhccccc
Q 014218 245 WVDTYFPFTNPSYELEIFFKE----NWLEVLGCGVTEQEILKRSGK--LNNVAWAFGLGLERLAMVLFDIPDIRLFWSSD 318 (428)
Q Consensus 245 ~~~~~~p~~hPg~~a~I~~~g----~~iGvlG~G~ihP~vl~~~gi--~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d 318 (428)
|.+...|++|||++|+|+++| +.||++ |+|||++++++|| +.++ ++|||||++|.|++++|||||+|||+|
T Consensus 140 ~~~~~~~~~hp~~sa~i~~~g~~~~~~iG~~--G~lhP~vl~~~~i~~~~~v-~~~Eidl~~l~~~~~~~~~~~~~~~~~ 216 (218)
T cd00496 140 FRPSYFPFTEPSFEVDVYCPGCLGWLEILGC--GMVRPEVLENAGIDEEYSG-FAFGIGLERLAMLKYGIPDIRLFYSND 216 (218)
T ss_pred ecCCcCCCCCCcEEEEEEeCCCCCeEEEEec--ccccHHHHHHCCCCCCceE-EEEEecHHHHHHHHhCCcHHHHHhhcC
Confidence 666777889999999999988 778888 9999999999999 8886 899999999999999999999999999
Q ss_pred hh
Q 014218 319 ER 320 (428)
Q Consensus 319 ~r 320 (428)
+|
T Consensus 217 ~~ 218 (218)
T cd00496 217 LR 218 (218)
T ss_pred CC
Confidence 76
No 16
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=99.96 E-value=4.5e-29 Score=233.24 Aligned_cols=186 Identities=19% Similarity=0.197 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh------
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK------ 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~------ 172 (428)
..++++||+.|.++ ||.|+. ++.+++.+..+.++.+...++++ .||+++++++||++|+|+++++++
T Consensus 3 ~~~~~~ir~~L~~~---G~~E~~--tys~~~~~~~~~~~~~~~~~i~l--~NPis~e~~~lR~sLlp~LL~~~~~N~~~~ 75 (198)
T cd00769 3 QKLERKLRRLLAGL---GFQEVI--TYSLTSPEEAELFDGGLDEAVEL--SNPLSEEYSVLRTSLLPGLLDALARNLNRK 75 (198)
T ss_pred hHHHHHHHHHHHHC---CCceee--cccCCCHHHHHhccCCCCCeEEE--cCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999 999997 66665554555665555456666 999999999999999999999996
Q ss_pred -cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEe---cCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeec
Q 014218 173 -EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFY---PDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDT 248 (428)
Q Consensus 173 -~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~---~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~ 248 (428)
.++++||+|+||.++.. .|.++...++.+.. +..|..+. ..++|+++||+++.++..++....+...+.
T Consensus 76 ~~~~~lFEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~---~~~~f~~~Kg~ve~ll~~l~~~~~~~~~~~ 148 (198)
T cd00769 76 NKPLRLFEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKG---RPVDFYDAKGILEALLRALGIIVEFELEEL 148 (198)
T ss_pred CCCEeEEEeEeEEecCCC----CCcchheEEEEEECCCccccccCCC---CccCHhhHHHHHHHHHHHcCCeEEEEecCC
Confidence 58999999999976531 23334444444432 24565432 357899999999999998875323322235
Q ss_pred cCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 249 YFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 249 ~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
..|++|||++|+|+++|+.+|++ |+|||++++++||+.++ ++|||+++.|
T Consensus 149 ~~~~~hpg~~a~I~~~g~~vG~~--G~lhP~v~~~~~l~~~v-~~~Ei~l~~l 198 (198)
T cd00769 149 DADLFHPGRSAKIYVNGEVIGFI--GELHPEVLKEFDLKEPV-YAFELDLDAL 198 (198)
T ss_pred CCCccCCCceEEEEECCEEEEEE--EeeCHHHHHHcCCCCce-EEEEEecccC
Confidence 56788999999999999999999 99999999999999996 8999999853
No 17
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.96 E-value=5.3e-29 Score=251.84 Aligned_cols=212 Identities=22% Similarity=0.286 Sum_probs=167.5
Q ss_pred hhcCC-CCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCc-hhhhhhc---------------CCCCCCcccc
Q 014218 84 TKLGM-QLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSV-KQNFDDV---------------LVPADHVSRS 146 (428)
Q Consensus 84 ~~~~r-~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~-~~nfd~L---------------~~p~dhp~r~ 146 (428)
.+..| .+..|+.||+-..-+++|+.--.+ ||.|++ ||++-. .+-+..+ |+|..+.+-.
T Consensus 34 ~~ypr~~~~~gk~hpv~~ti~~lreayl~~---gf~e~~--np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis 108 (533)
T TIGR00470 34 NKYPRLKFVYGKPHPLMETIERLREAYLRM---GFSEMV--NPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLG 108 (533)
T ss_pred ccCCcccccCCCCCcHHHHHHHHHHHHHhc---ChHhhc--CceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcC
Confidence 33444 688899999999999999998888 999996 898533 3322222 3333221100
Q ss_pred --cc------cccccc--------------------------------------------------------CCcccccc
Q 014218 147 --YN------DTYYVD--------------------------------------------------------SQTVLRCH 162 (428)
Q Consensus 147 --~~------~np~~~--------------------------------------------------------e~~~LRts 162 (428)
+. .-++++ ...+||||
T Consensus 109 ~~~~~~i~~~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~~~lLRTH 188 (533)
T TIGR00470 109 NEKIEIIENLGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPESTTLTLRSH 188 (533)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhhCcccccC
Confidence 00 001111 13699999
Q ss_pred hhHHHHHHHh-------cCCeEEEEeeEEecCC-CCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHH
Q 014218 163 TSAHQAELLK-------EHNHFLVTGDVYRRDS-IDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLA 234 (428)
Q Consensus 163 L~~~ll~~l~-------~~~~~FEiG~Vyr~d~-~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll 234 (428)
++|+|+.+++ .|.++|++|+|||+|+ .|.+|.+.|||++|+.+. ..+.|.|||++++.++
T Consensus 189 TTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVd------------edVSf~DLKgvLe~LL 256 (533)
T TIGR00470 189 MTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVD------------EEVSVDDGKAVAEGLL 256 (533)
T ss_pred ChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEEC------------CCCCHHHHHHHHHHHH
Confidence 9999888875 6899999999999995 688999999999999772 3568999999999999
Q ss_pred HHhcccceeEEeeccC--CCCCCCceEEEEECC----eeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCC
Q 014218 235 RHLFGAVEMRWVDTYF--PFTNPSYELEIFFKE----NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDI 308 (428)
Q Consensus 235 ~~L~~~~~~~~~~~~~--p~~hPg~~a~I~~~g----~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i 308 (428)
++++. .++++.+++. |+|-|+++++|.+.+ .|+++.|||++||+||+++||+.|+ +|||||+|||+|++++|
T Consensus 257 r~LG~-~~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~PV-~AFGIGVERlAMi~ygi 334 (533)
T TIGR00470 257 AQFGF-TKFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPV-MNLGLGVERLAMILYGY 334 (533)
T ss_pred HHhCC-ceEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCce-EEEEecHHHHHHHHhCC
Confidence 99954 5688888755 677788889998754 6999999999999999999999997 89999999999999999
Q ss_pred ccchhc
Q 014218 309 PDIRLF 314 (428)
Q Consensus 309 ~dirl~ 314 (428)
+|||.|
T Consensus 335 ~DIR~l 340 (533)
T TIGR00470 335 EDVRAM 340 (533)
T ss_pred cHHHhh
Confidence 999984
No 18
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.96 E-value=2.8e-28 Score=250.73 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=131.7
Q ss_pred CcccccchhHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHH
Q 014218 156 QTVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLK 227 (428)
Q Consensus 156 ~~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLK 227 (428)
.++||+||+|+++++++ .++++||+|+||+++.. +.+| .+..... ..| ... ..++|+++|
T Consensus 183 ~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~-------La~llsG-s~W-~~~---e~vDFfDlK 250 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASR-------LMTYHSA-SCV-IAD---EDVTVDDGK 250 (529)
T ss_pred cCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhh-------eeEEEEc-ccc-ccC---CCCCHHHHH
Confidence 47999999999999985 68999999999987532 2222 2222221 446 322 356899999
Q ss_pred HHHHHHHHHhcccceeEEeec--cCCCCCCCceEEEEE-----CC-eeEEEeeeeeccHHHHHHcCCCCceEEEEEechh
Q 014218 228 RCLEGLARHLFGAVEMRWVDT--YFPFTNPSYELEIFF-----KE-NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLE 299 (428)
Q Consensus 228 g~Le~Ll~~L~~~~~~~~~~~--~~p~~hPg~~a~I~~-----~g-~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le 299 (428)
|+++.|+..++.. ++++.+. ..|++|||++++|++ +| +.||++ |++||.+++++||+.++ ++||||++
T Consensus 251 GiLE~LL~~LGI~-~i~f~pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~f--GELHP~VLk~fDI~~pV-~aFELDLE 326 (529)
T PRK06253 251 AVAEGLLSQFGFT-KFKFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATF--GIYSPVALAEYGIDVPV-MNLGLGVE 326 (529)
T ss_pred HHHHHHHHHcCCC-eEEEeecccCCCCcCCCeEEEEEEEeecCCCCEEEEEE--EEECHHHHHHcCCCCce-EEEEEeHH
Confidence 9999999998764 3555555 568789999999998 78 678888 99999999999999996 89999999
Q ss_pred HHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec
Q 014218 300 RLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN 352 (428)
Q Consensus 300 ~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~ 352 (428)
+|+|....+.|||- ..|+|+|+||++.|||||++.
T Consensus 327 rL~~i~~~~~dir~------------------~~Y~~~SkFPav~RDLA~Vi~ 361 (529)
T PRK06253 327 RLAMILYGAEDVRE------------------MVYPQFYEWELSDREIARMIK 361 (529)
T ss_pred HHHhhhcCcccccc------------------cCcCCCCCCCCccceEEEEEe
Confidence 99998888888873 359999999999999999994
No 19
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.96 E-value=1.1e-27 Score=255.31 Aligned_cols=189 Identities=21% Similarity=0.205 Sum_probs=155.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCch-hhhhhcCCCCCC-ccccccccccccCCcccccchhHHH
Q 014218 90 LHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVK-QNFDDVLVPADH-VSRSYNDTYYVDSQTVLRCHTSAHQ 167 (428)
Q Consensus 90 l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~-~nfd~L~~p~dh-p~r~~~~np~~~e~~~LRtsL~~~l 167 (428)
.+.+..+|...+++++++.|.++ ||+|+. ++.+++. +||+.++++.+| ++++ .||+++++++||+||+|++
T Consensus 353 ~~~~~~~~~~~~~~~ir~~L~~~---Gf~Ev~--tys~~s~~~~~~~~~~~~~~~~i~l--~NPls~e~svLRtsLlpgL 425 (552)
T PRK09616 353 FTIGRLHPIEKLERAIRDLMVGL---GFQEVM--NFTLTSEEVLFEKMNLEPEEDYVEV--LNPISEDYTVVRTSLLPSL 425 (552)
T ss_pred ccCCCCChHHHHHHHHHHHHHhC---Ccceec--cceEechHHHHHHhCCCCCCCeEEE--cCCCccchheEeccchHHH
Confidence 34568899999999999999999 999997 6665554 559999888775 5666 9999999999999999999
Q ss_pred HHHHh------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccc
Q 014218 168 AELLK------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAV 241 (428)
Q Consensus 168 l~~l~------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~ 241 (428)
+++++ .++++||+|+||++++.+.++...++++.++ +.. ..++|+++||+||.++..++.
T Consensus 426 L~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~-~~g-----------~~~df~dlKg~ve~ll~~lgi-- 491 (552)
T PRK09616 426 LEFLSNNKHREYPQKIFEIGDVVLIDESTETGTRTERKLAAA-IAH-----------SEASFTEIKSVVQALLRELGI-- 491 (552)
T ss_pred HHHHHhccCCCCCeeEEEeeEEEecCCccccCcchhhEEEEE-EEC-----------CCCCHHHHHHHHHHHHHHcCC--
Confidence 99996 5789999999998765332232233334333 322 246899999999999999875
Q ss_pred eeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHH
Q 014218 242 EMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLA 302 (428)
Q Consensus 242 ~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~ 302 (428)
++.+.+..+|++|||++|+|+++|++||++ |++||++++++|++.++ ++|||+|+.|.
T Consensus 492 ~~~~~~~~~~~~hPg~sa~I~~~g~~iG~i--G~lhP~v~~~~~i~~~v-~~~Eidl~~l~ 549 (552)
T PRK09616 492 EYEVEESEHPSFIPGRCADILVNGKKIGVI--GEIHPEVLENFGIEVPV-VAFEIDLEALL 549 (552)
T ss_pred eEEEecCCCCcccCCceEEEEECCEEEEEE--EEECHHHHHhcCCCCce-EEEEEEHHHhh
Confidence 356677778989999999999999999999 99999999999999996 89999999874
No 20
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=99.95 E-value=2.9e-28 Score=201.35 Aligned_cols=91 Identities=36% Similarity=0.629 Sum_probs=79.5
Q ss_pred CCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEEEEecCCCCCCHHHHHHHHHH
Q 014218 338 SKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRIAYRSMERSLTDEDINELQWN 414 (428)
Q Consensus 338 SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~ 414 (428)
|+||+++||||||+|+++++++|.++|++.++++|++|++||+|+| ++|+||+|||++||++|||||++||++++++
T Consensus 1 S~fP~~~RDiS~~v~~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~ 80 (94)
T PF03147_consen 1 SKFPSVERDISFVVPEDVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDK 80 (94)
T ss_dssp -SS--EEEEEEEEEETTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHH
T ss_pred CcCCCccccEEEEECCCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999 3799999999999999999999999999999
Q ss_pred HHHHHHHhcCcccC
Q 014218 415 VREQVQSKLNVVLR 428 (428)
Q Consensus 415 i~~~l~~~l~~~LR 428 (428)
|+++|++++|++||
T Consensus 81 i~~~l~~~~~~~lR 94 (94)
T PF03147_consen 81 IIKALEKKLGAELR 94 (94)
T ss_dssp HHHHHHHTCT-BEE
T ss_pred HHHHHHHHhCcEeC
Confidence 99999999999998
No 21
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=99.95 E-value=1e-26 Score=249.61 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=153.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCch-hhhhhcCCCCC--CccccccccccccCCcccccchhHH
Q 014218 90 LHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVK-QNFDDVLVPAD--HVSRSYNDTYYVDSQTVLRCHTSAH 166 (428)
Q Consensus 90 l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~-~nfd~L~~p~d--hp~r~~~~np~~~e~~~LRtsL~~~ 166 (428)
.+.+..+|.+.+++.||+.|.++ ||+|+. ++++++. ++|+.|+.+.+ .++++ .||+++++++||+||+|+
T Consensus 391 ~~~g~~~~~~~~~~~iR~~l~~~---Gf~Ev~--t~sl~s~~~~~~~~~~~~~~~~~v~I--~NP~s~e~~vlRtSLlPg 463 (597)
T PLN02265 391 MTVGKQQPLNQFSDLLRAEVAMA---GFTEVL--TWILCSHKENFAMLNREDDGNSAVII--GNPRSADFEVVRTSLLPG 463 (597)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHC---Cceeee--ceeeCChHHHHHhhcCCccCCceEEE--CCCcchhHHHHHHhhHHH
Confidence 35578899999999999999999 999996 7777654 56999988754 35665 999999999999999999
Q ss_pred HHHHHh------cCCeEEEEeeEEecCCCCCCCCc-ceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 167 QAELLK------EHNHFLVTGDVYRRDSIDSTHYP-VFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 167 ll~~l~------~~~~~FEiG~Vyr~d~~d~~~~p-~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
++++++ .++++||+|+||.+++.. ..+ ...+..++.+.. ..++|+++||.|+.++..++.
T Consensus 464 LL~~l~~N~~~~~p~klFEiG~V~~~~~~~--~~~~~e~~~la~~~~g-----------~~~~f~~ikg~le~ll~~l~i 530 (597)
T PLN02265 464 LLKTLGHNKDAPKPIKLFEVSDVVLLDESK--DVGARNSRRLAALYCG-----------TTSGFEVIHGLVDRIMEVLGI 530 (597)
T ss_pred HHHHHHHhhcCCCCeeEEEeEeEEecCCcc--cCCcchhhEEEEEEEC-----------CCCCHhhHHHHHHHHHHHcCC
Confidence 999996 578999999999876421 122 123344544432 235899999999999998876
Q ss_pred c-c------eeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 240 A-V------EMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 240 ~-~------~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
. . .+.+.+..+|++||||+|+|+++|+.||++ |+|||+|+++|||+.|+ ++|||+|+.|
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~i--GelhP~vl~~f~l~~pv-~~~Eidl~~l 596 (597)
T PLN02265 531 PFVEIGDNNGYYVEPSNEPEYFPGRQASIIYKGKHVGTF--GIVHPEVLNNFDIPDPC-SFLELDLEPL 596 (597)
T ss_pred cccccccCceEEEeecCCccccCCceEEEEECCeEEEEE--EEECHHHHHHCCCCCce-EEEEEEhHHh
Confidence 3 1 244466777989999999999999999999 99999999999999996 8999999965
No 22
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=99.94 E-value=3.3e-26 Score=243.92 Aligned_cols=186 Identities=19% Similarity=0.169 Sum_probs=149.4
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCch-hhhhhcCCCCCCccccccccccccCCcccccchhHHHHHH
Q 014218 92 KRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVK-QNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 92 ~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~-~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~ 170 (428)
.+..++.+.++++||+.|.++ ||+|+. ++.+++. +.|+.++++.+..+++ .||+++++++||+||+|+++++
T Consensus 358 ~~~~~~~~~~~~~ir~~L~~~---Gf~E~i--tysf~s~~~~~~~~~~~~~~~v~l--~NPis~e~s~lR~SLlp~LL~~ 430 (551)
T TIGR00471 358 IGRLKPLNKVSDIIREIMVGL---GFQEVI--PLTLTSEEVNFKRMRIEDNNDVKV--ANPKTLEYTIVRTSLLPGLLET 430 (551)
T ss_pred cCCcChHHHHHHHHHHHHHhC---Cceeec--cceEccHHHHHHHhccCCCCcEEe--CCCCchhhhHhHhhhHHHHHHH
Confidence 457789999999999999999 999997 6665554 4458888876555555 9999999999999999999999
Q ss_pred Hh------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeE
Q 014218 171 LK------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMR 244 (428)
Q Consensus 171 l~------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~ 244 (428)
++ .++++||+|+||.+++.+..+.+.+. ..++.+.. ..++|+++||.||.++..++.. +.
T Consensus 431 ~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~e~~~~-~l~~~~~g-----------~~~df~d~Kg~ve~ll~~l~i~--~~ 496 (551)
T TIGR00471 431 LSENKHHELPQKIFEIGDVVVKDDKSETRSRVVT-KLAVGITH-----------SEANFNEIKSIVAALARELGIE--YE 496 (551)
T ss_pred HHhcccCCCCeeEEEEEEEEEcCCccccccceee-EEEEEEEC-----------CCCCHHHHHHHHHHHHHHcCCc--eE
Confidence 96 57899999999976532111111112 23333321 1468999999999999988753 56
Q ss_pred EeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 245 WVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 245 ~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
+.+..+|++|||++|.|+++|+.+|++ |+|||+++++||++.|+ ++|||+|+.|
T Consensus 497 ~~~~~~~~~hpgrsa~I~~~g~~iG~i--G~ihP~v~~~~~i~~~v-~~~Ei~l~~l 550 (551)
T TIGR00471 497 IEESEHPSFIPGRGAKIVFEGKAIGHF--GEIHPEVLTNFELEFPV-SAFEVNIEVF 550 (551)
T ss_pred EeecCCCccCCCceEEEEECCcEEEEE--EEECHHHHHhCCCCCce-EEEEEEehhc
Confidence 667777888999999999999999999 99999999999999996 8999999864
No 23
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.94 E-value=2.9e-26 Score=232.54 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=172.9
Q ss_pred CCCChhHH----hhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccc
Q 014218 76 NNVPDTIF----TKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTY 151 (428)
Q Consensus 76 ~nv~~~i~----~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np 151 (428)
.++.|... ..+..-.+.|..||++.+.+.||+.|.+. ||+|++ +|+++..+.||.|+.+.+..+.. +-+
T Consensus 216 ~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~---GFqEV~--TPtLt~eE~~E~m~~~~g~eI~n--~Iy 288 (453)
T TIGR02367 216 RELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDR---GFLEIK--SPILIPAEYIERMGIDNDTELSK--QIF 288 (453)
T ss_pred cccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHC---CCEEEE--CCeecchHHHHhhcCccCCcccc--cce
Confidence 45555555 34456679999999999999999999999 999996 99998778899998865543211 233
Q ss_pred cccCCcccccchhHHHHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHH
Q 014218 152 YVDSQTVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAK 224 (428)
Q Consensus 152 ~~~e~~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~ 224 (428)
.++++.+||++++|+++..+. .++++||+|+|||.+..+.+|+.+|+|+.+..+. ....|.
T Consensus 289 k~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG------------~~atfa 356 (453)
T TIGR02367 289 RVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMG------------SGCTRE 356 (453)
T ss_pred EecCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEEC------------CCCCHH
Confidence 377889999999999998763 4789999999999998888999999999888663 234678
Q ss_pred HHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECCeeE--EEeeeeeccHHHHHHcCCCCceEEEEEechhHHH
Q 014218 225 DLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWL--EVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLA 302 (428)
Q Consensus 225 dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g~~i--GvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~ 302 (428)
|+++.+..+++.|+++ +++. .+|.+.||++++|+.++..+ |++ |++|| +.+|||+.|| .||||+||||+
T Consensus 357 DlealL~e~Lr~LGId--feit--E~s~FI~GR~A~I~~G~~Ev~~Gvf--GEihp--L~~fGIe~PV-vAfEI~LeRLa 427 (453)
T TIGR02367 357 NLEAIIKDFLDHLEID--FEIV--GDSCMVYGDTLDIMHGDLELSSAVV--GPIPL--DREWGIDKPW-IGAGFGLERLL 427 (453)
T ss_pred HHHHHHHHHHHHCCCc--eEEe--CCCceEecceeeeecCCEEEeeEEE--eeccc--ccccCCCCcc-EEEEeehhHHH
Confidence 9999999999999874 4443 34788999999999554434 666 99996 9999999997 79999999999
Q ss_pred HhhcCCccchhc
Q 014218 303 MVLFDIPDIRLF 314 (428)
Q Consensus 303 m~~~~i~dirl~ 314 (428)
|+.+||.|||.+
T Consensus 428 m~~~g~~dir~~ 439 (453)
T TIGR02367 428 KVKHDFKNIKRA 439 (453)
T ss_pred HHHhCcHHHHHH
Confidence 999999999863
No 24
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.5e-26 Score=221.91 Aligned_cols=241 Identities=27% Similarity=0.445 Sum_probs=202.4
Q ss_pred CCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccC-
Q 014218 77 NVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDS- 155 (428)
Q Consensus 77 nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e- 155 (428)
...++.+...|.....|..||+.++|+..|++|..+ ||+|+.+-++|-|..||||.|..|+.||+|...|+++..+
T Consensus 193 ~FK~YNF~a~G~~p~~G~lHPLmKvR~eFRqiF~em---GFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~P 269 (483)
T KOG2784|consen 193 KFKPYNFNAEGVPPSSGHLHPLMKVREEFRQIFFEM---GFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDP 269 (483)
T ss_pred cCcccCcccCCCCCCCCccchHHHHHHHHHHHHHHc---cccccccccchhhccccchhhcCcccCCccccccceEecCh
Confidence 556677777888899999999999999999999999 9999998888889999999999999999999999887763
Q ss_pred --------------------------------------CcccccchhHHHHHHHh-------cCCeEEEEeeEEecCCCC
Q 014218 156 --------------------------------------QTVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSID 190 (428)
Q Consensus 156 --------------------------------------~~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~d 190 (428)
..+||||+++.....+. .+.++|-|.+|||....|
T Consensus 270 a~s~~~p~dY~~rVk~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvD 349 (483)
T KOG2784|consen 270 ATSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVD 349 (483)
T ss_pred hhcccCCHHHHHHHHHHHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccc
Confidence 25899999887655553 689999999999999999
Q ss_pred CCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECC--eeE
Q 014218 191 STHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKE--NWL 268 (428)
Q Consensus 191 ~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g--~~i 268 (428)
+||+.+|||.+|+..- ..+..-||-|+++.+...++.. ..+++|++.||+||+-+.-.+..| +|+
T Consensus 350 aTHLAEFHQVEGviad------------~gltLgdLig~l~~ff~~lg~t-nlrfKPaynpYtepsmeif~yh~gl~kwv 416 (483)
T KOG2784|consen 350 ATHLAEFHQVEGVIAD------------KGLTLGDLIGILMEFFTKLGAT-NLRFKPAYNPYTEPSMEIFSYHHGLFKWV 416 (483)
T ss_pred hHHHHHHhhhceeeec------------CCCcHHHHHHHHHHHHhccCCc-cccccCCCCCCCCceeEEEEeccccceEE
Confidence 9999999999999762 2456789999999999999874 678999999999998777766654 689
Q ss_pred EEeeeeeccHHHHHHcCCCCce-EEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCccee
Q 014218 269 EVLGCGVTEQEILKRSGKLNNV-AWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKD 346 (428)
Q Consensus 269 GvlG~G~ihP~vl~~~gi~~~v-~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RD 346 (428)
++--.|..||+.+...|++..+ +.+++|.|||-.|+.++|.+||-+- .. ...-.-+..-|.|+-|
T Consensus 417 EvgnSg~frPeml~pMGLp~Dv~vl~~glslErptmIkyg~~nir~l~-----------gh--kv~L~~~~~~Picrld 482 (483)
T KOG2784|consen 417 EVGNSGMFRPEMLLPMGLPMDVVVLAWGLSLERPTMIKYGIQNIRWLK-----------GH--KVDLVALPIQPICRLD 482 (483)
T ss_pred EEcCCCCCCHhHhhccCCCccceeeeecccccCchhhhhhhcchHHhh-----------cc--ceeEEEeccCcccccC
Confidence 8866899999999999997654 5678999999999999999998431 11 1233445666777655
No 25
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=1.2e-24 Score=221.25 Aligned_cols=197 Identities=18% Similarity=0.228 Sum_probs=165.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHH
Q 014218 89 QLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQA 168 (428)
Q Consensus 89 ~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll 168 (428)
-++.|..||+..+.+.|+++|.+. ||+|+. +|.++..+.|+.++.+.+++.+. ..|.+++..+||++++|+++
T Consensus 197 ~~~~g~~~~~s~Le~aIR~~f~~~---GF~EV~--TPtLt~ee~~e~~g~~~g~~i~~--~my~ideel~LRpsLtPsLl 269 (417)
T PRK09537 197 MYEEDREDYLGKLERDITKFFVDR---GFLEIK--SPILIPAEYIERMGIDNDTELSK--QIFRVDKNFCLRPMLAPGLY 269 (417)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHC---CCEEEE--CCeeecHHHHHHhCCCCcccchh--hheeeCCceEehhhhHHHHH
Confidence 378889999999999999999998 999996 89887777899998766544433 34667889999999999998
Q ss_pred HHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccc
Q 014218 169 ELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAV 241 (428)
Q Consensus 169 ~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~ 241 (428)
+.+. .|.++||+|+|||.+..+..|++.|+|+.+.... ....|.++++.++.++..|+++
T Consensus 270 r~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiG------------s~~~f~dL~~lleeLL~~LGI~- 336 (417)
T PRK09537 270 NYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMG------------SGCTRENLENIIDDFLKHLGID- 336 (417)
T ss_pred HHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeC------------CchHHHHHHHHHHHHHHHCCCC-
Confidence 8653 5789999999999988777899999888776541 2346899999999999999874
Q ss_pred eeEEeeccCCCCCCCceEEEEECCeeE--EEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 242 EMRWVDTYFPFTNPSYELEIFFKENWL--EVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 242 ~~~~~~~~~p~~hPg~~a~I~~~g~~i--GvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
++.. ..+.+.||++|+|..++..+ |++ |++| |+++|||..|| .|||||||||+|+.+|+.|||.
T Consensus 337 -f~i~--s~~~fi~GR~adI~~g~~el~~G~f--GEi~--VLe~fGI~~PV-va~EIdLerL~~~~~g~~~ir~ 402 (417)
T PRK09537 337 -YEII--GDNCMVYGDTIDIMHGDLELSSAVV--GPIP--LDREWGIDKPW-IGAGFGLERLLKVKHGYKNIKR 402 (417)
T ss_pred -cEEe--cCCcceecCeEEEEeCCEEEeeEEE--EEEe--hhhhcCCCCce-EEEEEeHHHHHHHHhCcHHHHH
Confidence 4443 44588999999999887655 777 8995 99999999996 7999999999999999999985
No 26
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.2e-19 Score=179.68 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=142.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCccccccccccccCCcccccchhHHHH
Q 014218 90 LHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQA 168 (428)
Q Consensus 90 l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll 168 (428)
...+..-|++++.+.+|..++.+ ||+|+. ++.+ |.++| .+..++.+.+ .||.+-++.++||+|+||++
T Consensus 386 ~~~~~~~plNkl~d~lR~e~a~a---g~~E~l--~~~LcS~de~----~~d~~~AV~l--~NPkt~efqv~RtsLlPGll 454 (578)
T KOG2472|consen 386 NTIAKPFPLNKLTDILRIEVAAA---GFTEAL--TFTLCSRDEN----VIDGDKAVHL--GNPKTLEFQVVRTSLLPGLL 454 (578)
T ss_pred hcccCccchHHHHHHHHHHHHHh---hhhhhe--eeeeeccccC----CcccccceEe--cCCCceeeeeehhhhchHHH
Confidence 44678899999999999999999 999996 6765 54554 2334566666 89999999999999999999
Q ss_pred HHHh------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccce
Q 014218 169 ELLK------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVE 242 (428)
Q Consensus 169 ~~l~------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~ 242 (428)
++++ .++++||++||..+|+........++.+.++.. + ...+|+.++|.|..+++--++...
T Consensus 455 KTv~~N~~~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A~y~-------g-----~~~gfE~i~Glld~~l~~~~~~~~ 522 (578)
T KOG2472|consen 455 KTVASNRKMPLPIKLFEISDVVFKDSSTEVGARNERHLAAVYC-------G-----KTSGFEIIHGLLDQLLNVPPIRDS 522 (578)
T ss_pred HHHHhccCCCCceeEEEeeeEEEecccccccccchheeeeeec-------C-----CCccHHHHHHHHHHHhcCCccccc
Confidence 9996 689999999999988753222222333333322 1 234799999999977764444323
Q ss_pred eEEee-ccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 243 MRWVD-TYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 243 ~~~~~-~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
| |.. .+.| +-|||+|.|++.|+.||.+ |++||+|+.+|+++.+. .++|||++.+
T Consensus 523 Y-~i~~~~~~-yfpgr~A~v~~~g~~iG~~--GvlhPev~~~F~l~~~~-s~~Ei~ie~~ 577 (578)
T KOG2472|consen 523 Y-YIEADEDP-YFPGRCAKVIVEGKVIGKI--GVLHPEVLTKFELTYPC-SAVEIDIEPF 577 (578)
T ss_pred e-EEecCcCC-cCCCcceEEEEcCceeeee--cccCHHHHhhcCCCCcc-ceEEeeeEec
Confidence 3 444 4457 7899999999999999999 99999999999999995 7899998853
No 27
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.77 E-value=4.4e-18 Score=158.33 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-----c
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-----E 173 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-----~ 173 (428)
..+.+.+++.|.+. ||+|+. +|+++..+.++.++... . .....||+.++..+||++++|++++.++ .
T Consensus 3 ~~~~~~~r~~l~~~---Gf~Ev~--t~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~ 74 (211)
T cd00768 3 SKIEQKLRRFMAEL---GFQEVE--TPIVEREPLLEKAGHEP-K--DLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKL 74 (211)
T ss_pred HHHHHHHHHHHHHc---CCEEeE--cceecHHHHHHHcCccH-h--heeeeecCCCCEEEECCCCcHHHHHHHHhhcccC
Confidence 56889999999998 999996 88877665556554432 2 2334799999999999999999999886 5
Q ss_pred CCeEEEEeeEEecCCCCC--CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEe-eccC
Q 014218 174 HNHFLVTGDVYRRDSIDS--THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWV-DTYF 250 (428)
Q Consensus 174 ~~~~FEiG~Vyr~d~~d~--~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~-~~~~ 250 (428)
+.++||+|+|||.+..+. .|...|.|+.+........ ...+++++|+.++.++..++++..+++. ....
T Consensus 75 ~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~--------~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~ 146 (211)
T cd00768 75 PLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGE--------EASEFEELIELTEELLRALGIKLDIVFVEKTPG 146 (211)
T ss_pred CEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCch--------hHHHHHHHHHHHHHHHHHcCCCcceEEEecCch
Confidence 789999999998765332 4566777666655432111 2246899999999999999863345555 3334
Q ss_pred CCC--CCCceEEEEEC-----CeeEEEeeeeeccHHHHHHcCCC
Q 014218 251 PFT--NPSYELEIFFK-----ENWLEVLGCGVTEQEILKRSGKL 287 (428)
Q Consensus 251 p~~--hPg~~a~I~~~-----g~~iGvlG~G~ihP~vl~~~gi~ 287 (428)
+++ |||++++|.++ |+.||.+ |++||.+++++|+.
T Consensus 147 ~~~~~~~g~~~~i~~~~~~~~~~eig~~--g~~~~~~~~~~~l~ 188 (211)
T cd00768 147 EFSPGGAGPGFEIEVDHPEGRGLEIGSG--GYRQDEQARAADLY 188 (211)
T ss_pred hhccccCCceEEEEEEccCCCeEEEeec--eeecCchhHhhhhh
Confidence 555 99999999998 8777877 99999999998885
No 28
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2e-14 Score=141.64 Aligned_cols=164 Identities=23% Similarity=0.376 Sum_probs=128.5
Q ss_pred cccccchhHHHHHHHh-------cCCeEEEEeeEEecCC-CCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHH
Q 014218 157 TVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDS-IDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKR 228 (428)
Q Consensus 157 ~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~-~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg 228 (428)
..||+|++.+..-.++ .++++|-|.++|||.+ .|.+|+-.+|...++.+. ..+...+-|.
T Consensus 183 lTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvd------------e~vtvD~GKa 250 (536)
T COG2024 183 LTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVD------------EDVTVDDGKA 250 (536)
T ss_pred eehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEc------------CcccccccHH
Confidence 5799999887443332 6899999999999865 467888777776666552 1234468899
Q ss_pred HHHHHHHHhcccceeEEeecc--CCCCCCCceEEEE------------ECCeeEEEeeeeeccHHHHHHcCCCCceEEEE
Q 014218 229 CLEGLARHLFGAVEMRWVDTY--FPFTNPSYELEIF------------FKENWLEVLGCGVTEQEILKRSGKLNNVAWAF 294 (428)
Q Consensus 229 ~Le~Ll~~L~~~~~~~~~~~~--~p~~hPg~~a~I~------------~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~af 294 (428)
+.|+|++++|.. ++++++.+ -.|+.||-+-+|+ +.+.||++.-+|.-.|.-|..+||+.|| .-.
T Consensus 251 VAEglL~qfGFe-~F~FrpDEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALaeY~Id~pV-MNL 328 (536)
T COG2024 251 VAEGLLRQFGFE-KFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAEYGIDYPV-MNL 328 (536)
T ss_pred HHHHHHHHhCcc-ceeeccccccccccCCCccceEEEecccccccccccCCCcEEEEeecccChHHHHHcCCCCce-eec
Confidence 999999999864 57776543 2577788777776 2357999988899999999999999997 778
Q ss_pred EechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec
Q 014218 295 GLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN 352 (428)
Q Consensus 295 EL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~ 352 (428)
+|+.|||+|+++|++|+|- ..|-.+.-+-.+.||||=.+.
T Consensus 329 GlGVERlaMIl~g~~DVR~------------------mvYpqi~ew~lSD~diA~mi~ 368 (536)
T COG2024 329 GLGVERLAMILHGADDVRS------------------MVYPQIYEWRLSDRDIARMIR 368 (536)
T ss_pred chhHHHHHHHHhCchHHhh------------------hhcccccccccchHHHHhhhh
Confidence 9999999999999999984 346666677788899987663
No 29
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.28 E-value=9e-12 Score=129.93 Aligned_cols=78 Identities=15% Similarity=0.318 Sum_probs=69.4
Q ss_pred CCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEEEEecCCCCCCHHHHHHHHHH
Q 014218 338 SKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRIAYRSMERSLTDEDINELQWN 414 (428)
Q Consensus 338 SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~ 414 (428)
-.||++.|||||++|+++++++|.++|++. ++|++|++||+|+| ++|+||+|||++||. +++.+.+.+
T Consensus 356 ~~fp~~~RDis~~v~~~~~~~~i~~~i~~~--~~l~~v~~fDvY~g~~i~~g~kSla~r~~~~~------~~~~~~~~~- 426 (437)
T PRK08655 356 KNLEKYVRDISVLFPKGADPEVILDLLDNL--KHVFDIEIIDVYSGKQIEEGYLSVTFRITVFG------KEDLENVEE- 426 (437)
T ss_pred hcCCccceeEEEEECCCCCHHHHHHHHhcC--CCcceEEEEEEeCCCCCCCCceEEEEEEEEEc------cccHHHHHH-
Confidence 369999999999999999999999999997 89999999999999 589999999999999 666666665
Q ss_pred HHHHHHHhcCcccC
Q 014218 415 VREQVQSKLNVVLR 428 (428)
Q Consensus 415 i~~~l~~~l~~~LR 428 (428)
+-+.+|+++|
T Consensus 427 ----~~~~~~~~~~ 436 (437)
T PRK08655 427 ----ILEGIGGKIR 436 (437)
T ss_pred ----HHhhcCCEeC
Confidence 4456888887
No 30
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.53 E-value=3.6e-06 Score=82.53 Aligned_cols=183 Identities=20% Similarity=0.320 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc-ccCCcccccchhHHHHHHHh-cCCe
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY-VDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~-~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
+.+.+.||++|... ||.|+. +|+++.... +. + .++-.+ ++. ......||+|---++..++. +--+
T Consensus 5 s~i~~~ir~~f~~~---gf~ev~--tP~l~~~~~-~~-~---~~~f~~---~~~~~g~~~~L~~Spql~~~~~~~~~~~~ 71 (269)
T cd00669 5 SKIIKAIRDFMDDR---GFLEVE--TPMLQKITG-GA-G---ARPFLV---KYNALGLDYYLRISPQLFKKRLMVGGLDR 71 (269)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCEEeccCC-cc-c---cceEEe---eecCCCCcEEeecCHHHHHHHHHhcCCCc
Confidence 56788999999998 999996 898853211 10 0 011111 111 25667888877777555554 5679
Q ss_pred EEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc---------------cc
Q 014218 177 FLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG---------------AV 241 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~---------------~~ 241 (428)
+|+||+|||.++.+..|+++|+|++.-..+ .++.++...+|.++.++.. +.
T Consensus 72 vf~i~~~fR~e~~~~~hl~EF~~le~e~~~--------------~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~ 137 (269)
T cd00669 72 VFEINRNFRNEDLRARHQPEFTMMDLEMAF--------------ADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDF 137 (269)
T ss_pred EEEEecceeCCCCCCCcccceeEEEEEEec--------------CCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 999999999998888999999999875442 2445666666655544431 00
Q ss_pred -----------------eeEEeec---c-CC-CCC-----CC--ceEEEEECCeeEEEeee-eeccH-------------
Q 014218 242 -----------------EMRWVDT---Y-FP-FTN-----PS--YELEIFFKENWLEVLGC-GVTEQ------------- 278 (428)
Q Consensus 242 -----------------~~~~~~~---~-~p-~~h-----Pg--~~a~I~~~g~~iGvlG~-G~ihP------------- 278 (428)
+..|+.. . .| +.. |+ .+.+++++|. |++|. -++|-
T Consensus 138 ~~~~~rit~~ea~~~~~~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~--Ei~~G~~r~~d~~~l~~~~~~~~~ 215 (269)
T cd00669 138 GLPFPRLTYREALERYGQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV--EVGNGSSRLHDPDIQAEVFQEQGI 215 (269)
T ss_pred CCCceEeeHHHHHHHhCCceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE--EEeeCchhcCCHHHHHHHHHHhCc
Confidence 1113211 1 12 222 22 4678888884 56652 33331
Q ss_pred --H--------HHH--HcCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 279 --E--------ILK--RSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 279 --~--------vl~--~~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+ .++ ++|++.. -.++||+|||.|.+.|.++||
T Consensus 216 ~~~~~~~~~~~yl~a~~~G~pp~--~G~glGieRL~m~~~g~~~Ir 259 (269)
T cd00669 216 NKEAGMEYFEFYLKALEYGLPPH--GGLGIGIDRLIMLMTNSPTIR 259 (269)
T ss_pred ChhhccccHHHHHHHHHcCCCCC--ceEeeHHHHHHHHHhCCCcHH
Confidence 1 122 2455433 467999999999999999986
No 31
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.87 E-value=0.00034 Score=66.44 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc--------cCCcccccchhHHHHHH
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV--------DSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~--------~e~~~LRtsL~~~ll~~ 170 (428)
..+.+.+++.+... ||+|+. +|++...+.|...+--+... . ..+.. .+.-+||+...++....
T Consensus 6 ~~l~~~~~~~~~~~---G~~ei~--~P~l~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~ 76 (235)
T cd00670 6 RALERFLDDRMAEY---GYQEIL--FPFLAPTVLFFKGGHLDGYR--K--EMYTFEDKGRELRDTDLVLRPAACEPIYQI 76 (235)
T ss_pred HHHHHHHHHHHHHc---CCEEEE--CCeEcCHHHHhhcCCcccch--h--hcCeeccCcccccCCeEEEecCCCHHHHHH
Confidence 46777788888777 999996 88876666665544111110 0 11111 34568999999888766
Q ss_pred Hh--------cCCeEEEEeeEEecCCCCC---CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 171 LK--------EHNHFLVTGDVYRRDSIDS---THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 171 l~--------~~~~~FEiG~Vyr~d~~d~---~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
++ .|++++++|+|||.+.... .....|+|.+...+..+++ ......++......++..|+.
T Consensus 77 ~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~--------~~~~~~e~~~~~~~~l~~lgl 148 (235)
T cd00670 77 FSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEE--------AEEERREWLELAEEIARELGL 148 (235)
T ss_pred HhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHH--------HHHHHHHHHHHHHHHHHHcCC
Confidence 64 4789999999999765431 2334677777665543211 122346777888888888876
Q ss_pred cceeEEeeccC----------CCCCCCceEEEEEC--CeeEEEe
Q 014218 240 AVEMRWVDTYF----------PFTNPSYELEIFFK--ENWLEVL 271 (428)
Q Consensus 240 ~~~~~~~~~~~----------p~~hPg~~a~I~~~--g~~iGvl 271 (428)
+..+......+ .+..|....+++.. |+|.++.
T Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~ 192 (235)
T cd00670 149 PVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETA 192 (235)
T ss_pred cEEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeee
Confidence 43332222111 45667777777764 4555444
No 32
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00031 Score=61.20 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=68.3
Q ss_pred hcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC-
Q 014218 305 LFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN- 383 (428)
Q Consensus 305 ~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g- 383 (428)
.|.|..+|+|-....|-.+ .. +.-...+|+|.++++++..+-|..+|.-. +-+.+++++|+|+|
T Consensus 58 Kfki~nvrvlse~ELr~wk---~e----------~L~~~v~DvSvlf~~~vDpEvil~avkll--k~~vd~~I~DvY~G~ 122 (171)
T COG4937 58 KFKILNVRVLSEDELRKWK---KE----------HLEKKVIDVSVLFKKDVDPEVILNAVKLL--KKMVDIEIIDVYEGE 122 (171)
T ss_pred EEEEeEEEEccHHHHHHHH---HH----------hhheEEEEEEEEecCCCCHHHHHhHHHhh--hheeEEEEEEeecCC
Confidence 4666777776544444322 11 12234689999999999999999988764 45899999999999
Q ss_pred --CCC-CeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 384 --KKG-MTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 384 --~~g-kkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
++| ++|++|||+--+. ++...+.+.+...+ +.+|.++|
T Consensus 123 ~i~ede~~siT~Ri~~f~~------dc~~~ie~E~l~i~-~g~gc~~r 163 (171)
T COG4937 123 KIEEDEYKSITFRIYGFNK------DCLKNIEKEFLKII-KGIGCKER 163 (171)
T ss_pred cCCCCceeeEEEEEEEeCh------hhhhhHHHHHHHHH-hccCceee
Confidence 566 7999999987652 23333334443333 34566544
No 33
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.55 E-value=0.00051 Score=74.10 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
+.+-+.||++|... ||.|+. +|+++... |-..-.|... ..|+ .+....||++.--++-.++. +--++
T Consensus 257 S~Ii~aiR~Ff~~r---GFlEVe--TPiL~~~~-----GGA~a~PF~T-~~n~-~d~~lYLriSpEL~lKrLlvgG~~rV 324 (585)
T PTZ00417 257 TKIINYLRNFLNDR---GFIEVE--TPTMNLVA-----GGANARPFIT-HHND-LDLDLYLRIATELPLKMLIVGGIDKV 324 (585)
T ss_pred HHHHHHHHHHHHHC---CeEEEe--CCeeeccC-----CcccceeEEe-cccC-CCcceEEeecHHHHHHHHHHhCCCCE
Confidence 45667889999988 999996 89986421 1111112211 1233 34556899988888777765 66899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
||||++||.++.+.+|.|+|++++.-.. ..|+.++-..+|.++..+.
T Consensus 325 feIgp~FRnE~~~~rHnpEFTmlE~y~a--------------y~dy~dlM~l~E~Li~~v~ 371 (585)
T PTZ00417 325 YEIGKVFRNEGIDNTHNPEFTSCEFYWA--------------YADFYDLIKWSEDFFSQLV 371 (585)
T ss_pred EEEcccccCCCCCCCccceeeeeeeeee--------------cCCHHHHHHHHHHHHHHHH
Confidence 9999999999989999999998876543 2366777777777766543
No 34
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.54 E-value=0.0005 Score=69.58 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|.+. ||.|+. +|+++... ..-++-..+.|......++ ......|++|..-+ .+++- +--++
T Consensus 34 s~i~~~iR~ff~~~---~f~EV~--TP~l~~~~-~~~~~~g~~~~~~~~~~~~-~~~~~yL~~Spql~-k~ll~~g~~rV 105 (335)
T PRK06462 34 SSILRYTREFLDGR---GFVEVL--PPIISPST-DPLMGLGSDLPVKQISIDF-YGVEYYLADSMILH-KQLALRMLGKI 105 (335)
T ss_pred HHHHHHHHHHHHHC---CCEEEe--CCeEecCC-CCCCCccccCCcccccccc-CCCceeeccCHHHH-HHHHHhhcCcE
Confidence 46778899999988 999996 89886320 0001111112222211233 35667888887666 44444 66899
Q ss_pred EEEeeEEecCCCCC---CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHH
Q 014218 178 LVTGDVYRRDSIDS---THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARH 236 (428)
Q Consensus 178 FEiG~Vyr~d~~d~---~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~ 236 (428)
||||+|||.++.+. .|.|+|.+++.-.. ..++.++...+|.++..
T Consensus 106 feI~p~FR~E~~~~~~~rHl~EFtmlE~e~~--------------~~d~~dlm~~~e~lv~~ 153 (335)
T PRK06462 106 FYLSPNFRLEPVDKDTGRHLYEFTQLDIEIE--------------GADLDEVMDLIEDLIKY 153 (335)
T ss_pred EEEeccccCCCCCCCCCCCCCchheeeehhh--------------cCCHHHHHHHHHHHHHH
Confidence 99999999988877 89999987765322 12455666666655543
No 35
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.001 Score=70.79 Aligned_cols=113 Identities=21% Similarity=0.269 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++... +-....|-.. ..| +.+....||.|---++-.++. +--++
T Consensus 176 s~i~~~iR~f~~~~---gF~EVe--TPiL~~~~-----~Ga~a~pF~t-~~~-~~~~~~yL~~Spql~lk~l~v~g~~rV 243 (491)
T PRK00484 176 SKIISAIRRFLDNR---GFLEVE--TPMLQPIA-----GGAAARPFIT-HHN-ALDIDLYLRIAPELYLKRLIVGGFERV 243 (491)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCceeccC-----CCccceeeee-ccc-cCCCceEeccCHHHHHHHHHhccCCcE
Confidence 45667788999888 999996 89885321 1010112211 013 334556799887766666665 67899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
||||++||.++.+..|.|+|.+++.-.. ..++.++...+|.++..+
T Consensus 244 fei~~~FR~E~~~~rH~pEFt~lE~e~a--------------~~d~~d~m~~~E~li~~i 289 (491)
T PRK00484 244 YEIGRNFRNEGIDTRHNPEFTMLEFYQA--------------YADYNDMMDLTEELIRHL 289 (491)
T ss_pred EEEecceecCCCCCCcCCceEEEEEEEe--------------cCCHHHHHHHHHHHHHHH
Confidence 9999999998888899999998886533 235677777777777655
No 36
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.43 E-value=0.001 Score=70.89 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++.... | ..-.|... ..|+ .+....||++---++-.++. +--++
T Consensus 188 s~i~~~iR~f~~~~---gFiEVe--TPiL~~~~g----G-a~a~pF~t-~~~~-~~~~~yL~~SpELylKrlivgG~~rV 255 (505)
T PRK12445 188 SKILAAIRQFMVAR---GFMEVE--TPMMQVIPG----G-ASARPFIT-HHNA-LDLDMYLRIAPELYLKRLVVGGFERV 255 (505)
T ss_pred HHHHHHHHHHHHHC---CCEEee--CCeeEecCC----C-Ccccceec-cccc-CCcceeeecCHHHHHHHHHhccCCcE
Confidence 34567788888887 999996 899854211 1 00012211 1233 34556799888666666555 67899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
||||+|||.++.+..|.|+|.+++.-.. ..|+.++...+|.++..+
T Consensus 256 feIg~~FRnE~~~~rH~pEFTmlE~y~a--------------~~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 256 FEINRNFRNEGISVRHNPEFTMMELYMA--------------YADYHDLIELTESLFRTL 301 (505)
T ss_pred EEEehhccCCCCCCCcCcccceeeeeee--------------cCCHHHHHHHHHHHHHHH
Confidence 9999999998888999999988876533 236677888888777665
No 37
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.40 E-value=0.001 Score=67.17 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccc-cccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSY-NDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~-~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
..+.+.||++|.+. ||.|+. +|+++...+ . + ..++-.+. ..+.+..+...|++|---++..++. +--+
T Consensus 26 s~i~~~ir~ff~~~---~f~Ev~--tP~l~~~~~-~--~--~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~ 95 (335)
T PF00152_consen 26 SAILQAIREFFDKR---GFIEVD--TPILTSSTC-E--G--GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLER 95 (335)
T ss_dssp HHHHHHHHHHHHHT---T-EEE-----SEESSSS-S--S--SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSE
T ss_pred HHHHHHHHHHHHhC---CceEEc--Cceeecccc-C--c--cccccccccchhhhcccceecCcChHHHHhhhccccchh
Confidence 46778999999998 999997 888753221 1 0 11232331 1133444778899999888888887 6789
Q ss_pred EEEEeeEEecCCC-CCCCCcceEEEEEEEE
Q 014218 177 FLVTGDVYRRDSI-DSTHYPVFHQMEGVSI 205 (428)
Q Consensus 177 ~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~ 205 (428)
+|+||.|||.++. +..|.|+|.+++.-..
T Consensus 96 vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a 125 (335)
T PF00152_consen 96 VFEIGPCFRNEESRTRRHLPEFTMLEWEMA 125 (335)
T ss_dssp EEEEEEEE-BSSSCBTTBSSEEEEEEEEEE
T ss_pred hhheecceeccCcccccchhhhhhhhhccc
Confidence 9999999999887 7889999998876543
No 38
>PRK09350 poxB regulator PoxA; Provisional
Probab=97.38 E-value=0.00047 Score=68.94 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc-----ccCCcccccchhHHHHHHHh-
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY-----VDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~-----~~e~~~LRtsL~~~ll~~l~- 172 (428)
..+.+.||++|... ||.|+. +|+++...+++.. -+|... + ++ ......||+|---++..++.
T Consensus 9 ~~i~~~ir~~f~~~---gf~EV~--TP~l~~~~~~~~~----~~~f~~--~-y~~~~~~~~~~~~L~~SPe~~~kr~la~ 76 (306)
T PRK09350 9 AKIIAEIRRFFADR---GVLEVE--TPILSQATVTDIH----LVPFET--R-FVGPGASQGKTLWLMTSPEYHMKRLLAA 76 (306)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCeEecccCCCcc----CCceee--e-eccccccCCcceEEecCHHHHHHHHhhc
Confidence 56788999999998 999996 8988643333321 122222 1 22 13556898776555444454
Q ss_pred cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 173 EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
+..++|++|+|||..+....|.++|.|++.-.. ..++.++-..+|.++..+.
T Consensus 77 ~~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~--------------~~d~~dlm~~~E~li~~i~ 128 (306)
T PRK09350 77 GSGPIFQICKSFRNEEAGRYHNPEFTMLEWYRP--------------HYDMYRLMNEVDDLLQQVL 128 (306)
T ss_pred cccceEEecceeecCCCCCCCCcHHHhhhhhhh--------------CCCHHHHHHHHHHHHHHHH
Confidence 556999999999988777889999988764322 3366778888888877654
No 39
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.34 E-value=0.0021 Score=64.91 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++...+ + ..-.|... ...+..+...|++|---++-.++. +--++
T Consensus 12 s~i~~~iR~ff~~~---gf~EV~--TP~L~~~~~----~-~~~~~f~~--~~~~~~~~~yL~~Spql~~k~ll~~g~~~v 79 (329)
T cd00775 12 SKIISYIRKFLDDR---GFLEVE--TPMLQPIAG----G-AAARPFIT--HHNALDMDLYLRIAPELYLKRLIVGGFERV 79 (329)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCccccCCC----C-ccceeEEe--ccCCCCcceeeccCHHHHHHHHHhcCCCcE
Confidence 46778999999998 999996 888853211 0 00011111 112345667788776656555554 67899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
|+||.|||.++.+..|.|+|.+++.-..+ .++.++...+|.++..+
T Consensus 80 f~i~~~FR~E~~~~rHl~EFt~le~e~~~--------------~~~~~~m~~~e~li~~i 125 (329)
T cd00775 80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAY--------------ADYNDMMDLTEDLFSGL 125 (329)
T ss_pred EEEeccccCCCCCCCCCCceEEEEEeeec--------------CCHHHHHHHHHHHHHHH
Confidence 99999999988888999999988765332 24556666666666544
No 40
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.34 E-value=0.00087 Score=71.32 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++... +-..-.|-... -|. .+....||.+.--++-.++. +--++
T Consensus 176 s~i~~~iR~fl~~~---gF~EVe--TP~L~~~~-----gga~a~pF~t~-~~~-~~~~~yLriSpELylKrlivgG~~rV 243 (496)
T TIGR00499 176 SKIIKAIRRFLDDR---GFIEVE--TPMLQVIP-----GGANARPFITH-HNA-LDMDLYLRIAPELYLKRLIVGGFEKV 243 (496)
T ss_pred HHHHHHHHHHHHHC---cCEEEe--CCeeecCC-----CCccceeEEee-ccc-CCCceEEecCHHHHHHHHHhCCCCce
Confidence 45667788889888 999996 89886321 11111122110 122 34566799987666666654 67899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
||||++||..+.+..|.|+|.+++.-.. ..++.++-..+|.++..+
T Consensus 244 feIg~~FRnE~~~~rH~pEFTmlE~y~a--------------~~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 244 YEIGRNFRNEGVDTTHNPEFTMIEFYQA--------------YADYEDLMDLTENLFKFL 289 (496)
T ss_pred EEEecceecCCCCCcccchhheeehhhh--------------cCCHHHHHHHHHHHHHHH
Confidence 9999999999888899999987764321 236677877777777655
No 41
>PLN02502 lysyl-tRNA synthetase
Probab=97.34 E-value=0.001 Score=71.53 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+...||++|... ||.|+. +|+++... +-....|-... .| +.+....||++---++-.++. +--++|
T Consensus 234 ~i~~~iR~fl~~~---gF~EVe--TPiL~~~~-----gGA~a~pF~t~-~n-~~~~~~yL~~Spel~lK~L~v~g~~rVf 301 (553)
T PLN02502 234 KIISYIRRFLDDR---GFLEVE--TPMLNMIA-----GGAAARPFVTH-HN-DLNMDLYLRIATELHLKRLVVGGFERVY 301 (553)
T ss_pred HHHHHHHHHHHHC---CCEEEE--CCeeeccC-----CCccccceeee-cc-cCCcceeeecCHHHHHHHHHHhccCCEE
Confidence 4447788889888 999996 89986421 11111222210 13 345677899988887777665 678999
Q ss_pred EEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 179 EiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
|||++||.++.+..|.|+|.+++.-.. ..++.++...+|.++..+
T Consensus 302 eIg~~FRnE~~~~rH~pEFtmlE~y~a--------------~~d~~dlm~~~E~li~~i 346 (553)
T PLN02502 302 EIGRQFRNEGISTRHNPEFTTCEFYQA--------------YADYNDMMELTEEMVSGM 346 (553)
T ss_pred EEcCeeeCCCCCCccccceeehhhhhh--------------cCCHHHHHHHHHHHHHHH
Confidence 999999999888899999987764322 235677777777776544
No 42
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=97.28 E-value=0.0022 Score=58.33 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHh-ccCCCCcEEEccCCCccCchhhhhhcCCCC---CCccccccccccccCCcccccchhHHHHHHHh--
Q 014218 99 GILKNAIYEYFD-SNYPNKFNKFDDLCPIVSVKQNFDDVLVPA---DHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~-~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~---dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-- 172 (428)
+.|.+.+++.+. .. ||+|+. +|++...+.+...|.-+ ++-.+. .+ -.++..+||+..-++....++
T Consensus 3 ~~l~~~~~~~~~~~~---G~~ev~--~P~l~~~~~~~~sg~~~~~~~~~~~~--~~-~~~~~~~L~pt~~~~~~~~~~~~ 74 (173)
T PF00587_consen 3 NALERFIREEFVLKF---GFQEVD--TPILIPSEVWEKSGHWDNFSDEMFKV--KD-RGDEEYCLRPTSEPGIYSLFKNE 74 (173)
T ss_dssp HHHHHHHHHHHHHHT---TEEEEB----SEEEHHHHHHHSHHHHHGGGSEEE--EE-TTTEEEEE-SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhc---CCEEEE--CCeEEehHHhhhccccccccCCeeee--ee-cccccEEeccccccceeeeecce
Confidence 467788888888 77 999997 78775555444433210 111111 00 011457999999999988875
Q ss_pred -------cCCeEEEEeeEEecCCCC---CCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc-cc
Q 014218 173 -------EHNHFLVTGDVYRRDSID---STHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG-AV 241 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d---~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~-~~ 241 (428)
.|++++++|.+||+.... ...+-.|+|.++..+..+++ ..-.+..+......+++.|++ ++
T Consensus 75 ~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~--------~~~~~~~~~~~~~~i~~~lgl~~~ 146 (173)
T PF00587_consen 75 IRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQ--------SEEEFEELLELYKEILEKLGLEPY 146 (173)
T ss_dssp EEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHH--------HHHHHHHHHHHHHHHHHHTTSGCE
T ss_pred eeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcc--------cHHHHHHHHHHHHHHHHHcCCceE
Confidence 379999999999987322 23456788888887764322 222457788888899999987 54
Q ss_pred eeE
Q 014218 242 EMR 244 (428)
Q Consensus 242 ~~~ 244 (428)
.+.
T Consensus 147 ~~~ 149 (173)
T PF00587_consen 147 RIV 149 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 43
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.27 E-value=0.0019 Score=70.34 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++... .. ..-+|-.. ..| +.+....||+|---++-.++. +--++
T Consensus 237 s~I~~aiR~ff~~~---gFlEVe--TPiL~~~~--~g---a~a~pF~t-~~n-~~~~~~yL~~SPELylKrLivgG~erV 304 (659)
T PTZ00385 237 HVMLQALRDYFNER---NFVEVE--TPVLHTVA--SG---ANAKSFVT-HHN-ANAMDLFLRVAPELHLKQCIVGGMERI 304 (659)
T ss_pred HHHHHHHHHHHHHC---CCEEee--CCEeeccC--CC---CCccceEe-ecc-cCCCCEEecCChHHHHHHHhhcccCCE
Confidence 45667889999888 999997 88884211 00 00012211 012 134556799888777777775 67899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
||||+|||.++.+..|.|+|.+++.-.. ..++.++-..+|.|+..+
T Consensus 305 yeIg~~FRnE~~~~rH~pEFTmlE~y~a--------------~~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 305 YEIGKVFRNEDADRSHNPEFTSCEFYAA--------------YHTYEDLMPMTEDIFRQL 350 (659)
T ss_pred EEEeceecCCCCCCCccccccceeeeee--------------cCCHHHHHHHHHHHHHHH
Confidence 9999999999888899999988775432 236677777777777654
No 44
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.24 E-value=0.0021 Score=64.68 Aligned_cols=93 Identities=15% Similarity=0.268 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCCeEE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFL 178 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~~~F 178 (428)
+.+.+.||++|.+. ||.|+. +|+++... .+. ...|.. ..|.+....|++|.--++-.++.+--++|
T Consensus 28 s~i~~~ir~~f~~~---gf~eV~--TP~l~~~~-~e~----~~~~f~----~~~~~~~~yL~~Spql~lk~l~~~~~~vf 93 (322)
T cd00776 28 SEVLRAFREFLREN---GFTEVH--TPKITSTD-TEG----GAELFK----VSYFGKPAYLAQSPQLYKEMLIAALERVY 93 (322)
T ss_pred HHHHHHHHHHHHHC---CCEEee--CCceecCC-CCc----cCCccc----cccCCCcceecCCHHHHHHHHHHhhhhhE
Confidence 46778888888888 999997 88885411 111 011221 22445677899888887766665567899
Q ss_pred EEeeEEecCCCC-CCCCcceEEEEEEEE
Q 014218 179 VTGDVYRRDSID-STHYPVFHQMEGVSI 205 (428)
Q Consensus 179 EiG~Vyr~d~~d-~~~~p~f~q~~g~~~ 205 (428)
+||+|||.++.+ ..|.|+|.+++.-..
T Consensus 94 ~i~~~FR~E~~~~~rHl~EFtmlE~e~~ 121 (322)
T cd00776 94 EIGPVFRAEKSNTRRHLSEFWMLEAEMA 121 (322)
T ss_pred EeccccccCCCCcCCCcceeeccceeee
Confidence 999999987754 479999988775533
No 45
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.09 E-value=0.002 Score=66.79 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=76.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCCccccc--cccccccCCcccccchh
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADHVSRSY--NDTYYVDSQTVLRCHTS 164 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dhp~r~~--~~np~~~e~~~LRtsL~ 164 (428)
+.++....+....+.+.|++.|... ||.|+. +|++...+.|... +-..+++.... .... ..+.-+||+.++
T Consensus 11 ~d~~p~~~~~~~~i~~~i~~~~~~~---Gy~ei~--tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T 84 (412)
T PRK00037 11 RDILPEESAKWQYVEDTIREVFERY---GFSEIR--TPIFEYTELFKRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGT 84 (412)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHc---CCeEee--ccccchHHHhccccCcccccccceeEEEEcC-CCCEEEecCCCc
Confidence 3455566788899999999999988 999996 8888655555332 21111111100 0111 345679999988
Q ss_pred HHHHHHHh----cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 165 AHQAELLK----EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 165 ~~ll~~l~----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
+.....+. .+.|+|.+|+|||.+.....++..|+|..+-.+
T Consensus 85 ~~~ar~~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~ 129 (412)
T PRK00037 85 APVVRAVIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVI 129 (412)
T ss_pred HHHHHHHHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeee
Confidence 88877664 589999999999987665566777777655444
No 46
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.03 E-value=0.0013 Score=65.69 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccc----cccCCcccccchhHHHHHHHh-c
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTY----YVDSQTVLRCHTSAHQAELLK-E 173 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np----~~~e~~~LRtsL~~~ll~~l~-~ 173 (428)
+.+.+.||++|... ||.|+. +|+++....-+. + -+|... ++ .......||+|---++-.++. +
T Consensus 5 s~i~~~ir~~f~~~---gF~EV~--TP~l~~~~~~e~-~---~~~F~~---~y~~~~~~~~~~yL~~Spql~lk~ll~~g 72 (304)
T TIGR00462 5 ARLLAAIRAFFAER---GVLEVE--TPLLSPAPVTDP-H---LDAFAT---EFLGPDGEGRPLYLQTSPEYAMKRLLAAG 72 (304)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCeEecCCCCCc-C---Ccceee---eccCCCCCCcceeeecCHHHHHHHHHhcc
Confidence 56788999999998 999997 888864311110 0 012111 12 224567898887777766665 6
Q ss_pred CCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 174 HNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 174 ~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
--++||||+|||.++.+..|.|+|.+++.- . ...++.++...+|.++..+.
T Consensus 73 ~~rVfeigp~FRaE~~~~rHl~EFtmLE~e---------~-----~~~d~~d~m~~~e~li~~i~ 123 (304)
T TIGR00462 73 SGPIFQICKVFRNGERGRRHNPEFTMLEWY---------R-----PGFDYHDLMDEVEALLQELL 123 (304)
T ss_pred CCCEEEEcCceeCCCCCCCcccHHHhHHHH---------H-----HcCCHHHHHHHHHHHHHHHH
Confidence 689999999999988888899998765432 1 23467788888888776654
No 47
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.02 E-value=0.0089 Score=59.06 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc--ccCCcccccchhHHHHHHHh-cCC
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY--VDSQTVLRCHTSAHQAELLK-EHN 175 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~--~~e~~~LRtsL~~~ll~~l~-~~~ 175 (428)
+.+.+.||++|.+. ||.|+. +|+++.... .+. .+-.. .+. ..+...|++|---++..++. +--
T Consensus 5 s~i~~~iR~f~~~~---gfiEV~--TP~L~~~~~---~g~---~~f~~---~~~~~~~~~~~L~~Spql~lk~ll~~g~~ 70 (280)
T cd00777 5 SRVIKAIRNFLDEQ---GFVEIE--TPILTKSTP---EGA---RDFLV---PSRLHPGKFYALPQSPQLFKQLLMVSGFD 70 (280)
T ss_pred HHHHHHHHHHHHHC---CCEEEe--CCeeecCCC---CCC---CCcee---ccccCCCceeecccCHHHHHHHHHhcCcC
Confidence 56788999999998 999996 899863211 111 11111 111 12223488777666665665 668
Q ss_pred eEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 176 HFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
++|++|+|||.++.+..|.++|.|++.-.. ..++.++...+|.++..+
T Consensus 71 ~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~--------------~~~~~dlm~~~e~li~~i 118 (280)
T cd00777 71 RYFQIARCFRDEDLRADRQPEFTQIDIEMS--------------FVDQEDIMSLIEGLLKYV 118 (280)
T ss_pred cEEEeccceeCCCCCCCccceeEEeEeeec--------------cCCHHHHHHHHHHHHHHH
Confidence 999999999998877777788877665432 225667777777666543
No 48
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=96.95 E-value=0.0057 Score=64.01 Aligned_cols=93 Identities=11% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|.+. ||.|+. +|+++... .+. +. ++... + |......|++|---++..++. +--++
T Consensus 137 s~i~~~iR~ff~~~---gf~EV~--TP~L~~~~-~eg-~~---~~f~v---~-~~~~~~yL~~Spql~~q~li~~g~~rV 202 (428)
T TIGR00458 137 SGVLESVREFLAEE---GFIEVH--TPKLVASA-TEG-GT---ELFPI---T-YFEREAFLGQSPQLYKQQLMAAGFERV 202 (428)
T ss_pred HHHHHHHHHHHHHC---CCEEEe--CCceecCC-CCC-Cc---ceeee---E-ecCCcEEECcCHHHHHHHHHhcccCcE
Confidence 34567788888887 999997 88875211 110 00 01111 2 334666788887777666665 67899
Q ss_pred EEEeeEEecCCCCC-CCCcceEEEEEEEE
Q 014218 178 LVTGDVYRRDSIDS-THYPVFHQMEGVSI 205 (428)
Q Consensus 178 FEiG~Vyr~d~~d~-~~~p~f~q~~g~~~ 205 (428)
||+|++||.++.+. .|.|+|.+++.-..
T Consensus 203 f~i~~~FR~E~~~t~rHl~EFt~lE~e~a 231 (428)
T TIGR00458 203 YEIGPIFRAEEHNTHRHLNEATSIDIEMA 231 (428)
T ss_pred EEEecccccCCCCCccchheeeEeeeeec
Confidence 99999999887763 69999988776543
No 49
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=96.92 E-value=0.0029 Score=73.23 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|.+. ||.|+. +|+++...+ .. .-.|-.. ..|++ +....||.+---++-.++. +--++
T Consensus 774 s~i~~~iR~fl~~~---gFlEVe--TPiL~~~~g-Ga----~a~pF~t-~~~~~-~~~~yLriSPELylKrLivgG~erV 841 (1094)
T PRK02983 774 SAVVRAVRETLVAR---GFLEVE--TPILQQVHG-GA----NARPFVT-HINAY-DMDLYLRIAPELYLKRLCVGGVERV 841 (1094)
T ss_pred HHHHHHHHHHHHHC---CCEEEe--CCEeeccCC-Cc----ccceeEe-eecCC-CccchhhcChHHHHHHHHhcccCce
Confidence 45667789999888 999997 899863221 10 0012211 12433 4456788887777666665 67899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
||||++||.++.+.+|.|+|.+++.-. ...|+.|+-..+|.++..+.
T Consensus 842 FEIg~~FRnE~~~~rHnpEFTmLE~y~--------------a~~dy~d~m~l~E~li~~i~ 888 (1094)
T PRK02983 842 FELGRNFRNEGVDATHNPEFTLLEAYQ--------------AHADYDTMRDLTRELIQNAA 888 (1094)
T ss_pred EEEcceecCCCCCCCccccccchhhhh--------------hcCCHHHHHHHHHHHHHHHH
Confidence 999999999999989999998776432 23477888888888887664
No 50
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=96.89 E-value=0.0073 Score=63.39 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++.. +.+. +. ++... ++ ......|++|---++.-++. +--++
T Consensus 140 s~i~~~iR~ff~~~---gf~EV~--TP~L~~~-~~eg-~~---~~f~~---~~-~~~~~~L~~Spql~~q~l~~~g~~rV 205 (437)
T PRK05159 140 SEVLRAFREFLYEN---GFTEIF--TPKIVAS-GTEG-GA---ELFPI---DY-FEKEAYLAQSPQLYKQMMVGAGFERV 205 (437)
T ss_pred HHHHHHHHHHHHHC---CCEEEe--CCccccc-CCCC-Cc---ceEeE---Ee-cCCceEecCCHHHHHHHHHhcCCCcE
Confidence 34567788999888 999997 8887421 1110 00 01111 22 34566788888887666665 57899
Q ss_pred EEEeeEEecCCCCC-CCCcceEEEEEEEE
Q 014218 178 LVTGDVYRRDSIDS-THYPVFHQMEGVSI 205 (428)
Q Consensus 178 FEiG~Vyr~d~~d~-~~~p~f~q~~g~~~ 205 (428)
|+||++||.++.+. .|.|+|.+++.-..
T Consensus 206 f~i~~~FR~E~~~t~rHl~EFt~lE~e~a 234 (437)
T PRK05159 206 FEIGPVFRAEEHNTSRHLNEYTSIDVEMG 234 (437)
T ss_pred EEEeceeeCCCCCCcccchhhheeeeeee
Confidence 99999999887774 69999998876544
No 51
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=96.75 E-value=0.011 Score=62.34 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccc-----cccccccCCcccccchhHHHHHHHh-
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSY-----NDTYYVDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~-----~~np~~~e~~~LRtsL~~~ll~~l~- 172 (428)
..+.+.||++|... ||.|+. +|+++.. ..+..+ +|-... ..+.|-.....|++|---++ +.+.
T Consensus 137 s~i~~~iR~f~~~~---gf~EV~--TP~L~~~-~~eg~~----~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~ 205 (450)
T PRK03932 137 NTLAQAIHEFFNEN---GFVWVD--TPIITAS-DCEGAG----ELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAM 205 (450)
T ss_pred HHHHHHHHHHHHHC---CCEEec--CCceecc-CCCCCC----CceEeecccccccccccCCCcccccCHHHHH-HHHHh
Confidence 34567788889888 999996 8988632 111111 111110 11123446678888887776 3343
Q ss_pred cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEE
Q 014218 173 EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSI 205 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~ 205 (428)
+--++|+||+|||..+. +..|.|+|.+++.-..
T Consensus 206 g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~ 239 (450)
T PRK03932 206 ALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMA 239 (450)
T ss_pred ccCCeEEeeeccccCCCCCccccccccccceEEe
Confidence 67899999999998776 4689999988776543
No 52
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=96.71 E-value=0.007 Score=62.47 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCC-CCcccccccccc----ccCCcccccchh
Q 014218 90 LHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPA-DHVSRSYNDTYY----VDSQTVLRCHTS 164 (428)
Q Consensus 90 l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~-dhp~r~~~~np~----~~e~~~LRtsL~ 164 (428)
+.....+....+.+.|++.|... ||.++. +|++...+.|....-+. +++.. ..+. ..+.-+||+.++
T Consensus 9 ~~p~~~~~~~~i~~~i~~~f~~~---Gy~~i~--~P~le~~~~~~~~~g~~~~~~~~---~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 9 FLPEEMIKWQYIEETIREVFELY---GFKEIR--TPIFEYTELFARKVGEETDIVEK---EMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc---CCeEec--CcccchHHHhhhccCcccccccc---ceEEEECCCCCEEeecCCCc
Confidence 33445567788999999999998 999996 88887655554322111 11110 1111 234568999999
Q ss_pred HHHHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 165 AHQAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 165 ~~ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
+.....+. .+.|+|.+|+|||.+..+..+...|.|..+-.+
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eii 128 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVI 128 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeee
Confidence 88877653 378999999999977655556667777655444
No 53
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=96.69 E-value=0.008 Score=63.37 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchh---hhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCC
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQ---NFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN 175 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~---nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~ 175 (428)
..+.+.+|++|... ||.|+. +|+++... +-+.+-++.++... ..+ |......|+.|-.-++.-++.+--
T Consensus 140 s~i~~~~r~~~~~~---gf~eV~--TP~l~~~~~eg~~~~F~v~~~~~~~--~~~-~~~~~~yL~~Spql~lq~l~~g~~ 211 (453)
T TIGR00457 140 NALSQAIHRYFQEN---GFTWVS--PPILTSNDCEGAGELFRVSTDGIDF--SQD-FFGKEAYLTVSGQLYLETYALALS 211 (453)
T ss_pred HHHHHHHHHHHHHC---CCEEec--CCeEeecCCCCCCCceEeccccccc--chh-ccCCccccccCHHHHHHHHhhccc
Confidence 45667788888887 999996 89885321 11111111111000 012 344566788886555543333668
Q ss_pred eEEEEeeEEecCCCC-CCCCcceEEEEEEE
Q 014218 176 HFLVTGDVYRRDSID-STHYPVFHQMEGVS 204 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d-~~~~p~f~q~~g~~ 204 (428)
++||+|++||.++.+ ..|.|+|.+++.-.
T Consensus 212 rVf~i~~~FR~E~~~t~rHl~EFt~le~e~ 241 (453)
T TIGR00457 212 KVYTFGPTFRAEKSNTSRHLSEFWMIEPEM 241 (453)
T ss_pred CceEeeeccccCCCCCCcCcchhccceeee
Confidence 999999999988776 47999998877643
No 54
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=96.59 E-value=0.017 Score=62.46 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCc--hhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCC
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSV--KQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHN 175 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~--~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~ 175 (428)
..+...||++|... ||.|+. +|+++. .+.--... .|.+. ...+...||.|---++.-++. +--
T Consensus 142 s~i~~~iR~ff~~~---gFiEVe--TP~L~~s~~eGar~f~----vp~~~-----~~~~~y~L~qSpQlykq~l~v~G~e 207 (583)
T TIGR00459 142 HKVTKAVRNFLDQQ---GFLEIE--TPMLTKSTPEGARDYL----VPSRV-----HKGEFYALPQSPQLFKQLLMVSGVD 207 (583)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCeeccCCCCCCccee----eeeec-----CCCceeecCCCHHHHHHHHHhcccC
Confidence 35667888999888 999997 898853 11100000 11111 112233488776666555554 678
Q ss_pred eEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 176 HFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
++|++|++||.++.+..|.|+|.|++.-.. ..+..++-..+|.++..+.
T Consensus 208 rvfqI~~~FR~E~~~t~r~pEFT~le~E~a--------------f~d~~dvm~~~E~li~~v~ 256 (583)
T TIGR00459 208 RYYQIARCFRDEDLRADRQPEFTQIDMEMS--------------FMTQEDVMELIEKLVSHVF 256 (583)
T ss_pred cEEEEcceeeCCCCCCCCCcccCcceeeec--------------CCCHHHHHHHHHHHHHHHH
Confidence 999999999988777777799988765432 3356788888887776654
No 55
>PLN02530 histidine-tRNA ligase
Probab=96.53 E-value=0.024 Score=60.34 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=64.0
Q ss_pred CCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHH
Q 014218 94 NQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAE 169 (428)
Q Consensus 94 ~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~ 169 (428)
...-.+.+.+.+++.|... ||.|+. +|++...+.|..-.-+. ... ..|. ..+.-+||+=++++...
T Consensus 83 ~~~~~~~i~~~~~~~~~~~---Gy~~I~--tP~lE~~el~~~~~g~~---~~~--~~y~f~D~~g~~l~LRpD~T~~iaR 152 (487)
T PLN02530 83 DMRLRNWLFDHFREVSRLF---GFEEVD--APVLESEELYIRKAGEE---ITD--QLYNFEDKGGRRVALRPELTPSLAR 152 (487)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCEecc--ccccchHHHhccccCcc---ccc--ceEEEECCCCCEEecCCCCcHHHHH
Confidence 3344567778888888877 999997 88886555553211111 111 1121 23456899999998887
Q ss_pred HHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEE
Q 014218 170 LLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQME 201 (428)
Q Consensus 170 ~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~ 201 (428)
.+. .+.|+|.+|+|||.+......+..|+|.-
T Consensus 153 ~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~g 191 (487)
T PLN02530 153 LVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWN 191 (487)
T ss_pred HHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcC
Confidence 663 46899999999997654444556677743
No 56
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=96.45 E-value=0.026 Score=54.94 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCC--CCCccccccccccccCCcccccchhHHHHHHHh---
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVP--ADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p--~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~--- 172 (428)
.+.+.+.+++.|... ||.++. +|++...+.+...+.+ .+...+. ... ..+.-+||+-+++.......
T Consensus 5 ~~~l~~~l~~~f~~~---Gy~~v~--tP~le~~~~~~~~~~~~~~~~~~~~--~d~-~g~~l~LRpd~T~~iaR~~a~~~ 76 (261)
T cd00773 5 RRYIEDTLREVFERY---GYEEID--TPVFEYTELFLRKSGDEVSKEMYRF--KDK-GGRDLALRPDLTAPVARAVAENL 76 (261)
T ss_pred HHHHHHHHHHHHHHc---CCEEee--ccceeeHHHhcccccccccceEEEE--ECC-CCCEEEeCCCCcHHHHHHHHhcC
Confidence 457888889999888 999996 8888665555433211 1111111 011 13457999999998887654
Q ss_pred ----cCCeEEEEeeEEecCCCCCCCCcceEEEE
Q 014218 173 ----EHNHFLVTGDVYRRDSIDSTHYPVFHQME 201 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~ 201 (428)
.+.|+|.+|+|||.......+...++|..
T Consensus 77 ~~~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g 109 (261)
T cd00773 77 LSLPLPLKLYYIGPVFRYERPQKGRYREFYQVG 109 (261)
T ss_pred ccCCCCeEEEEEcCEEecCCCCCCCccceEEec
Confidence 46899999999997665545566666643
No 57
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=96.31 E-value=0.017 Score=62.28 Aligned_cols=112 Identities=12% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+.+.||++|... ||.|+. +|.++... .+ .+.-.- ..+|-+....|++|---+..-++. +--++|
T Consensus 218 ~i~~~~R~fl~~~---gFiEV~--TP~L~~~~-~e------gga~~F--~v~yf~~~~~L~qSpql~kq~li~~g~~rVf 283 (550)
T PTZ00401 218 RVCQYFRQFLIDS---DFCEIH--SPKIINAP-SE------GGANVF--KLEYFNRFAYLAQSPQLYKQMVLQGDVPRVF 283 (550)
T ss_pred HHHHHHHHHHHHC---CCEEEe--CCccccCC-CC------cccccc--ccccCCCCeecCCCHHHHHHHHHhcCCCCEE
Confidence 5667888888887 999997 78764211 00 010001 123456778888887777444444 578999
Q ss_pred EEeeEEecCCCC-CCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 179 VTGDVYRRDSID-STHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 179 EiG~Vyr~d~~d-~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
|||.|||.++.+ ..|.|+|.+++.-..+ ..++.++...+|.|+..++
T Consensus 284 eI~p~FRaE~s~T~RHl~EFt~Le~E~~~-------------~~~y~evm~~~e~l~~~i~ 331 (550)
T PTZ00401 284 EVGPVFRSENSNTHRHLTEFVGLDVEMRI-------------NEHYYEVLDLAESLFNYIF 331 (550)
T ss_pred EEeCeEeCCCCCCCCCccchhhhhhhhHh-------------cCCHHHHHHHHHHHHHHHH
Confidence 999999987764 4688998776541110 1134567777776665544
No 58
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0056 Score=63.17 Aligned_cols=152 Identities=21% Similarity=0.269 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccccc---C---CcccccchhHHHHHHHh-
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVD---S---QTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~---e---~~~LRtsL~~~ll~~l~- 172 (428)
++-.-||.+|... ||.|+. +|+++...+ . ...-|++. + .-.||-.--=.+-.++-
T Consensus 230 kII~~iRkfld~r---gFlEVE--TPmmn~iaG---------G----A~AkPFIT~hndldm~LylRiAPEL~lK~LvVG 291 (560)
T KOG1885|consen 230 KIISYIRKFLDSR---GFLEVE--TPMMNMIAG---------G----ATAKPFITHHNDLDMDLYLRIAPELYLKMLVVG 291 (560)
T ss_pred HHHHHHHHHhhhc---CceEec--chhhccccC---------c----cccCceeecccccCcceeeeechHHHHHHHHhc
Confidence 3445567777766 999996 888753210 0 00122221 1 13466544333333443
Q ss_pred cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCC-
Q 014218 173 EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFP- 251 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p- 251 (428)
+-.+.||||++||...+|.||-|+|...+.. . ..+|++|+...-|.|+..+-..+.-.+.-.++|
T Consensus 292 GldrVYEIGr~FRNEGIDlTHNPEFTTcEfY---------~-----AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~ 357 (560)
T KOG1885|consen 292 GLDRVYEIGRQFRNEGIDLTHNPEFTTCEFY---------M-----AYADYEDLMDMTEELLSGMVKNITGSYKITYHPN 357 (560)
T ss_pred cHHHHHHHHHHhhhcCcccccCCCcchHHHH---------H-----HHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCC
Confidence 6788999999999999999999998543321 1 346788999888888765432211112222332
Q ss_pred -CCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCc
Q 014218 252 -FTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNN 289 (428)
Q Consensus 252 -~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~ 289 (428)
...| +.+|-+.-.| ..+ ++++.+-+.+|++-+
T Consensus 358 ~~~~~--~~eldf~~pf-rri---~mi~~L~k~lgi~l~ 390 (560)
T KOG1885|consen 358 GPEEP--ELELDFTRPF-RRI---EMIEELEKELGIKLP 390 (560)
T ss_pred CCCCC--ceeeeccCCe-eee---eHHHHHHHHhCCCCC
Confidence 2223 4444443322 233 566788888887655
No 59
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.0065 Score=63.60 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
.++.+.||++|... ||.|+. +|++.+-. |-..--|- ...-|-+ +-.-.||-..-=.+-.++- +--++
T Consensus 184 s~ii~~iR~fl~~~---gFlEVE--TP~lq~i~-----GGA~ArPF-~ThhNal-d~dlyLRIApELyLKRliVGG~erV 251 (502)
T COG1190 184 SKIIRAIREFLDDR---GFLEVE--TPMLQPIP-----GGAAARPF-ITHHNAL-DMDLYLRIAPELYLKRLIVGGFERV 251 (502)
T ss_pred HHHHHHHHHHHHHC---CCeEec--cccccccC-----CCcccccc-eeeeccc-CCceEEeeccHHHHHHHHhcCchhh
Confidence 56778899999988 999996 88884311 10000111 0001221 2234678776666666666 44599
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
||||++||...+|.+|-|.|..++.- | ..+|+.|+....|.|++.+-
T Consensus 252 fEIgr~FRNEGid~tHNPEFTmlE~Y-------~-------AYaDy~D~m~ltE~Li~~~a 298 (502)
T COG1190 252 FEIGRNFRNEGIDTTHNPEFTMLEFY-------Q-------AYADYEDLMDLTEELIKELA 298 (502)
T ss_pred eeeccccccCCCccccCcchhhHHHH-------H-------HHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998755432 1 34578898888888877654
No 60
>PLN02850 aspartate-tRNA ligase
Probab=96.20 E-value=0.018 Score=61.84 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+.+.+|++|... ||.|+. +|+++.. +.+. |. .|.. ..|-.....|++|---++.-++. +--++|
T Consensus 230 ~i~~~~R~fl~~~---gF~EV~--TP~L~~~-~~eg-ga---~~F~----v~yf~~~~~L~qSpql~kq~li~~g~~rVf 295 (530)
T PLN02850 230 QVCNLFREFLLSK---GFVEIH--TPKLIAG-ASEG-GS---AVFR----LDYKGQPACLAQSPQLHKQMAICGDFRRVF 295 (530)
T ss_pred HHHHHHHHHHHHC---CcEEEe--CCccccC-CCcc-cc---ceee----eccCCcceecCCCHHHHHHHHHHhcCCceE
Confidence 4567788888887 999996 8887421 1111 10 1222 23445777898887777666665 678999
Q ss_pred EEeeEEecCCC-CCCCCcceEEEEE
Q 014218 179 VTGDVYRRDSI-DSTHYPVFHQMEG 202 (428)
Q Consensus 179 EiG~Vyr~d~~-d~~~~p~f~q~~g 202 (428)
|||.|||.++. ...|+++|.+++.
T Consensus 296 eIgp~FRaE~s~t~RHl~EFt~Le~ 320 (530)
T PLN02850 296 EIGPVFRAEDSFTHRHLCEFTGLDL 320 (530)
T ss_pred EEecccccCCCCCCccchhhccchh
Confidence 99999998763 4568898876643
No 61
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=96.14 E-value=0.035 Score=61.30 Aligned_cols=113 Identities=13% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCC-CccccccccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPAD-HVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~d-hp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
..+.+.||++|... ||.|+. +|+++... ++. .+...+ .+.+..+...|+.|---+..-++. +--+
T Consensus 160 s~i~~~iR~fl~~~---gFiEVe--TPiL~~s~-------~eGAr~~~~p-~~~~~~~~y~L~qSPQlykq~lm~~G~~r 226 (706)
T PRK12820 160 HRIIKCARDFLDSR---GFLEIE--TPILTKST-------PEGARDYLVP-SRIHPKEFYALPQSPQLFKQLLMIAGFER 226 (706)
T ss_pred HHHHHHHHHHHHHC---CCEEEe--CCccccCC-------CCCCcceEEe-eecCCCcceecCCCHHHHHHHHHhccCCc
Confidence 34567788999888 999996 89885311 111 000010 011122333488766555555544 7789
Q ss_pred EEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 177 FLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
+|+||++||.++.+..|.|+|.|++.-.. .++..++-..+|.++..++
T Consensus 227 vfqI~~~FR~E~~~t~r~pEFT~LE~E~a--------------f~d~~dvm~l~E~li~~v~ 274 (706)
T PRK12820 227 YFQLARCFRDEDLRPNRQPEFTQLDIEAS--------------FIDEEFIFELIEELTARMF 274 (706)
T ss_pred EEEEechhcCCCCCCCcCccccccceeec--------------cCCHHHHHHHHHHHHHHHH
Confidence 99999999988777777799988765422 3466788888888777554
No 62
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=96.14 E-value=0.054 Score=59.62 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc---cCCcccccchhHHHHHHHh-
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV---DSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~---~e~~~LRtsL~~~ll~~l~- 172 (428)
-...+.+.+++.+... ||+|+. +|++...+-|..-| .-++- +. ..|.. ++.-+||+...++.....+
T Consensus 276 ~~~~i~~~~~~~~~~~---G~~~v~--tP~l~~~~l~~~sG-~~~~~-~~--emy~~d~~~~~~~LrP~~~~~~~~~~~~ 346 (639)
T PRK12444 276 IRNELEAFLREIQKEY---NYQEVR--TPFMMNQELWERSG-HWDHY-KD--NMYFSEVDNKSFALKPMNCPGHMLMFKN 346 (639)
T ss_pred HHHHHHHHHHHHHHHc---CCEEEE--CCccCCHHHHhhcC-Chhhh-hh--hcCeecCCCcEEEEccCCCHHHHHHHhC
Confidence 3455666777777766 999996 89887666666544 12221 11 33432 2345699998888887765
Q ss_pred -------cCCeEEEEeeEEecCCCCCC----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 -------EHNHFLVTGDVYRRDSIDST----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++++|.|||.+....+ -+..|+|.++-....+++ ....+.++-..++.++..|+.+
T Consensus 347 ~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~--------~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 347 KLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQ--------IEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred cccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHH--------HHHHHHHHHHHHHHHHHHcCCc
Confidence 38999999999997653211 245677776664432211 1222345666667777777764
No 63
>PLN02903 aminoacyl-tRNA ligase
Probab=96.12 E-value=0.046 Score=59.80 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhc-cCCCCcEEEccCCCccCchhhhhhcCCCCC--CccccccccccccCCcccccchhHHHHHHHh-cC
Q 014218 99 GILKNAIYEYFDS-NYPNKFNKFDDLCPIVSVKQNFDDVLVPAD--HVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EH 174 (428)
Q Consensus 99 ~~l~~~I~~~l~~-~~~~gf~e~~~~~pvvs~~~nfd~L~~p~d--hp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~ 174 (428)
..+.+.||++|.. . ||.|+. +|+++.... -|- .+ .|.+. ...+...|++|---+..-++. +-
T Consensus 207 s~i~~~iR~fl~~~~---gFiEVe--TPiL~~st~---eGa-rdf~v~~~~-----~~g~~y~L~qSPQlykQ~Lm~~G~ 272 (652)
T PLN02903 207 HRVVKLIRRYLEDVH---GFVEIE--TPILSRSTP---EGA-RDYLVPSRV-----QPGTFYALPQSPQLFKQMLMVSGF 272 (652)
T ss_pred HHHHHHHHHHHHhcC---CeEEEE--CCeeccCCC---CCC-cccEEeeec-----CCCcccccCCCHHHHHHHHHhccC
Confidence 3456778888885 6 999996 888852110 000 01 11111 112333577665555444444 67
Q ss_pred CeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 175 NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 175 ~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
.++|+||+|||.++.+..|.|+|.|++.-.. ..+..++-..+|.++..+.
T Consensus 273 ~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~s--------------f~d~~dvm~~~E~li~~v~ 322 (652)
T PLN02903 273 DRYYQIARCFRDEDLRADRQPEFTQLDMELA--------------FTPLEDMLKLNEDLIRQVF 322 (652)
T ss_pred CcEEEEehhhccCCCCCCcccceeeeeeeec--------------CCCHHHHHHHHHHHHHHHH
Confidence 8999999999988777667799988765422 3456788888887776554
No 64
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=96.09 E-value=0.049 Score=59.27 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCC-CCCCccccccccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLV-PADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~-p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
..+...||++|... ||.|+. +|+++.... . |- +--.|.+. +..++..|++|---++.-++. +--+
T Consensus 145 s~i~~~iR~ff~~~---gFiEV~--TP~L~~s~~-e--ga~~f~v~~~~-----~~~~~~~L~qSpql~kq~l~~~g~~r 211 (588)
T PRK00476 145 SKVTSAIRNFLDDN---GFLEIE--TPILTKSTP-E--GARDYLVPSRV-----HPGKFYALPQSPQLFKQLLMVAGFDR 211 (588)
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCeeecCCC-C--CCccceecccc-----cCCceeecCCCHHHHHHHHHhcccCc
Confidence 45677889999988 999997 898853110 0 10 00012221 122334577666555544454 6789
Q ss_pred EEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 177 FLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
+|++|+|||.++.+..+.|+|.|++.-.. .++..++-..+|.++..+.
T Consensus 212 vfqi~~~FR~E~~~~~r~~EFt~le~e~a--------------f~~~~dvm~~~E~li~~i~ 259 (588)
T PRK00476 212 YYQIARCFRDEDLRADRQPEFTQIDIEMS--------------FVTQEDVMALMEGLIRHVF 259 (588)
T ss_pred eEEEeceeecCCCCCCcCcccccceeeec--------------CCCHHHHHHHHHHHHHHHH
Confidence 99999999987766666778887764432 2356777777777776554
No 65
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.016 Score=56.68 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccccc--CCcccccchhHHHHHHHh-cCC
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVD--SQTVLRCHTSAHQAELLK-EHN 175 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~--e~~~LRtsL~~~ll~~l~-~~~ 175 (428)
..+-..||.+|... ||.|+. +|.++..-+-|.-. |+....--.|--+ ..-.|.||---|+-.++. +.-
T Consensus 20 a~i~~~iR~FF~er---g~lEVe--Tp~Ls~a~vtd~hL----~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~ 90 (322)
T COG2269 20 AAIIAAIRRFFAER---GVLEVE--TPALSVAPVTDIHL----HPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSG 90 (322)
T ss_pred HHHHHHHHHHHHHc---CceEec--chHhhcCCCCccce----eeeeeEEeccCccccceeeeecCcHHHHHHHHHccCC
Confidence 57888999999998 999997 78876433222110 1211111122222 334677777778888888 888
Q ss_pred eEEEEeeEEecCCCCCCCCcceEEEE
Q 014218 176 HFLVTGDVYRRDSIDSTHYPVFHQME 201 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d~~~~p~f~q~~ 201 (428)
.+|.+|+|||..+...-|-|+|+.++
T Consensus 91 ~ifql~kvfRN~E~G~~H~PEFTMLE 116 (322)
T COG2269 91 PIFQLGKVFRNEEMGRLHNPEFTMLE 116 (322)
T ss_pred cchhhhHHHhcccccccCCCceeEee
Confidence 99999999999988889999998665
No 66
>PLN02603 asparaginyl-tRNA synthetase
Probab=96.00 E-value=0.057 Score=58.33 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCch--hh-hhhcC------------------CCCCCccccccccccccCCcc
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVK--QN-FDDVL------------------VPADHVSRSYNDTYYVDSQTV 158 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~--~n-fd~L~------------------~p~dhp~r~~~~np~~~e~~~ 158 (428)
.+...+|++|... ||.|+. +|+++.. +. =+... +|..++.....+.-|-.+...
T Consensus 231 ~i~~air~ff~~~---gF~eV~--TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~ 305 (565)
T PLN02603 231 ALAYATHKFFQEN---GFVWVS--SPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAF 305 (565)
T ss_pred HHHHHHHHHHHHC---CCEEEE--CCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCccee
Confidence 4556778888887 999996 8998542 11 11111 111111111000112233456
Q ss_pred cccchhHHHHHHHhcCCeEEEEeeEEecCCCC-CCCCcceEEEEEEE
Q 014218 159 LRCHTSAHQAELLKEHNHFLVTGDVYRRDSID-STHYPVFHQMEGVS 204 (428)
Q Consensus 159 LRtsL~~~ll~~l~~~~~~FEiG~Vyr~d~~d-~~~~p~f~q~~g~~ 204 (428)
|+.|..-|+--.+.+--++|++|.+||.+..+ ..|+++|.+++.-.
T Consensus 306 LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~ 352 (565)
T PLN02603 306 LTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPEL 352 (565)
T ss_pred eccCchHHHHHHHhcccceEEEecceeCCCCCCccccccceeeeeee
Confidence 66665444333333557899999999987764 57999998877643
No 67
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=95.73 E-value=0.093 Score=52.24 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccccc---CCcccccchhHHHHHHHh--
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVD---SQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~---e~~~LRtsL~~~ll~~l~-- 172 (428)
.+.+.+.+++.+... ||+|+. +|++-..+.|..-+ |--....+.|... +.-+||+...|+.....+
T Consensus 33 ~~~l~~~~~~~~~~~---Gy~ev~--tP~l~~~~l~~~sg----~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~ 103 (298)
T cd00771 33 RNELEDFLRELQRKR---GYQEVE--TPIIYNKELWETSG----HWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSK 103 (298)
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCeecCHHHHhhCC----CccccccCceEeccCCceEEEcccCCHHHHHHHHhh
Confidence 345666666666666 999996 88886565555432 2111111223222 356899988888766553
Q ss_pred ------cCCeEEEEeeEEecCCCCC----CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 ------EHNHFLVTGDVYRRDSIDS----THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~d~----~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.|||...... .....|+|.++-.+..+++ ....+.++-..++.+++.|++
T Consensus 104 ~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~--------~~~e~~e~l~~~~~~l~~lgl 172 (298)
T cd00771 104 PRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQ--------IKEEIKGVLDLIKEVYSDFGF 172 (298)
T ss_pred ccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcc--------hHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999765421 1234677777665543221 112234566666777777765
No 68
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=95.63 E-value=0.14 Score=49.84 Aligned_cols=170 Identities=12% Similarity=-0.000 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccc----hhHHHHHH
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCH----TSAHQAEL 170 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRts----L~~~ll~~ 170 (428)
..+.+.+++.+... ||+|+. .|++...+.|..-| |-.....+.+.. ++.-+||+. +.+-..+.
T Consensus 35 ~~i~~~~~~~~~~~---G~~ei~--~P~l~~~~~~~~sg----~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~ 105 (255)
T cd00779 35 KKIENIIREEMNKI---GAQEIL--MPILQPAELWKESG----RWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANE 105 (255)
T ss_pred HHHHHHHHHHHHHc---CCEEEE--CCccCCHHHHHhcC----CccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhc
Confidence 45666666777666 999996 88887666665432 110111122222 234578887 33333322
Q ss_pred Hh----cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccccee
Q 014218 171 LK----EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEM 243 (428)
Q Consensus 171 l~----~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~ 243 (428)
+. .|++++.+|.|||.+..+.. -+..|+|.++..+..+.. .....+..+....+.+++.|+++ +
T Consensus 106 i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~-------~a~~~~~~i~~~~~~il~~Lgl~--~ 176 (255)
T cd00779 106 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEE-------SLEETYEKMYQAYSRIFKRLGLP--F 176 (255)
T ss_pred cccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHH-------HHHHHHHHHHHHHHHHHHHcCCc--E
Confidence 22 58999999999997633222 234566665554432111 11222346777778888988874 3
Q ss_pred EEee---ccCCCCCCC--ceEEEEE-CCeeEEEeeeeeccHHHHHHcCCC
Q 014218 244 RWVD---TYFPFTNPS--YELEIFF-KENWLEVLGCGVTEQEILKRSGKL 287 (428)
Q Consensus 244 ~~~~---~~~p~~hPg--~~a~I~~-~g~~iGvlG~G~ihP~vl~~~gi~ 287 (428)
+... ..+.. .-+ ..++.+. +++.+++-.|--+...-.+.++|.
T Consensus 177 ~~~~~~~~~~gg-~~s~~~~~e~~~~~~~~~e~~s~~~lg~~~sr~~~i~ 225 (255)
T cd00779 177 VKVEADSGAIGG-SLSHEFHVLSPLKITKGIEVGHIFQLGTKYSKALGAT 225 (255)
T ss_pred EEEEecCCCCCC-cccEEEEEEEecCCCCeEEEEeeeecchhHHHhcCcE
Confidence 3222 11222 112 3344444 445566554556666677777775
No 69
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=95.61 E-value=0.28 Score=48.00 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCC-C-c--ccccc-ccccccCCcccccchhHHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPAD-H-V--SRSYN-DTYYVDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~d-h-p--~r~~~-~np~~~e~~~LRtsL~~~ll~~l 171 (428)
-.+.+.+.|++.+... ||+|+. .|++...+.+...|--++ . + -+... .+-..++.-+||+.-.+.+....
T Consensus 34 i~~~I~~~i~~~~~~~---G~~ev~--~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~ 108 (264)
T cd00772 34 ILDKIENVLDKMFKEH---GAQNAL--FPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIA 108 (264)
T ss_pred HHHHHHHHHHHHHHHc---CCeEEE--CCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHH
Confidence 3467778888888877 999996 888766555554432111 0 0 01100 00001245678887777666655
Q ss_pred h--------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEE-ecCCccccCcccccccHHHHHHHHHHHHHHhc-
Q 014218 172 K--------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIF-YPDEWGAAGLDATEYAAKDLKRCLEGLARHLF- 238 (428)
Q Consensus 172 ~--------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~-~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~- 238 (428)
+ .|++++.+|.|||.+..+.. ....|++.++.... .++ .....+..+....+.++..|+
T Consensus 109 ~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e--------~a~~e~~~~~~~~~~i~~~l~~ 180 (264)
T cd00772 109 AKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAE--------EADEEFLNMLSAYAEIARDLAA 180 (264)
T ss_pred HhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHH--------HHHHHHHHHHHHHHHHHHhcCC
Confidence 4 48999999999997643322 23455666665442 111 112234566666788888887
Q ss_pred ccceeEEeeccC----CCCCCCceEEEEEC-Ce
Q 014218 239 GAVEMRWVDTYF----PFTNPSYELEIFFK-EN 266 (428)
Q Consensus 239 ~~~~~~~~~~~~----p~~hPg~~a~I~~~-g~ 266 (428)
++ +++....- .--.-+.+.+++.. |+
T Consensus 181 lp--~~~~~~~~~d~~~g~~~~~d~e~~~p~~~ 211 (264)
T cd00772 181 ID--FIEGEADEGAKFAGASKSREFEALMEDGK 211 (264)
T ss_pred cc--EEEEEcCCCccccCCcCCEEEEEECCCCC
Confidence 54 44432211 11223345666665 54
No 70
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=95.61 E-value=0.073 Score=55.77 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCCcccccccccc----ccCCcccccchhHHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l 171 (428)
-...+.+.|++.+... ||.++. +|++-..+.|... |-..+.+ +. ..|. ..+.-.||+-++|+.....
T Consensus 20 ~~~~i~~~i~~~~~~~---Gy~~I~--TP~~E~~e~~~~~~G~~~~~~-~~--~my~~~d~~g~~l~LRpd~T~~iaR~~ 91 (430)
T CHL00201 20 YWQFIHDKALTLLSLA---NYSEIR--TPIFENSSLYDRGIGETTDIV-NK--EMYRFTDRSNRDITLRPEGTAGIVRAF 91 (430)
T ss_pred HHHHHHHHHHHHHHHc---CCeeec--CcccchHHHHhcccCCccccc-cc--ceEEEEcCCCCEEEeCCCCcHHHHHHH
Confidence 4567888888888887 999997 8988655555432 2111111 11 2222 2345689999999998864
Q ss_pred -h-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 172 -K-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 172 -~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
. .+.|++.+|.|||.+......+..|+|...=.+
T Consensus 92 ~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~Eii 133 (430)
T CHL00201 92 IENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFI 133 (430)
T ss_pred HHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEE
Confidence 2 367999999999976644445667787654443
No 71
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=95.56 E-value=0.17 Score=50.41 Aligned_cols=187 Identities=15% Similarity=0.167 Sum_probs=103.5
Q ss_pred HHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh-------
Q 014218 101 LKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK------- 172 (428)
Q Consensus 101 l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~------- 172 (428)
+.+-+++.+.+. ||+|+. +|.+...+.+...|.-+.- +. +.+.. ++.-+||++--+.+....+
T Consensus 58 l~~~~~~~~~~~---G~~ev~--~P~l~~~~l~~~sg~~~~~--~~--~~f~v~~~~~~L~pt~e~~~~~l~~~~~~s~~ 128 (297)
T cd00770 58 LINFALDFLTKR---GFTPVI--PPFLVRKEVMEGTGQLPKF--DE--QLYKVEGEDLYLIATAEVPLAALHRDEILEEE 128 (297)
T ss_pred HHHHHHHHHHHC---CCEEEE--CcccccHHHHhhcCcCccC--hh--cccEecCCCEEEeecCCHHHHHHHhcccCCHh
Confidence 555555666665 999996 8888767767655531110 00 12222 1455777666666666553
Q ss_pred -cCCeEEEEeeEEecCCCCC----CC---CcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeE
Q 014218 173 -EHNHFLVTGDVYRRDSIDS----TH---YPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMR 244 (428)
Q Consensus 173 -~~~~~FEiG~Vyr~d~~d~----~~---~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~ 244 (428)
.|++++++|.+||...... .. ...|.+.++.....+++ ..-.+.++....+.+++.|+++ ++
T Consensus 129 ~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~--------~~~~~~~~l~~~~~i~~~lgl~--~~ 198 (297)
T cd00770 129 ELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEE--------SWEELEELISNAEEILQELGLP--YR 198 (297)
T ss_pred hCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchH--------HHHHHHHHHHHHHHHHHHcCCc--EE
Confidence 5899999999998653311 11 23455666654443322 2224677888888899888875 44
Q ss_pred Eeec-cCCCCCC---CceEEEEE--CCeeEEEeeeeeccHHHHHHcCCCCc---------e--EEEEEechhHHHHhhc
Q 014218 245 WVDT-YFPFTNP---SYELEIFF--KENWLEVLGCGVTEQEILKRSGKLNN---------V--AWAFGLGLERLAMVLF 306 (428)
Q Consensus 245 ~~~~-~~p~~hP---g~~a~I~~--~g~~iGvlG~G~ihP~vl~~~gi~~~---------v--~~afEL~Le~L~m~~~ 306 (428)
+... .....+| ...++++. .+.+.++.+|--...-..+++++... + ....+++++|+...+.
T Consensus 199 ~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~R~l~all 277 (297)
T cd00770 199 VVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAIL 277 (297)
T ss_pred EEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeEecccchHHHHHHHHHH
Confidence 4321 1111122 12344444 35567777653333444566666321 2 1124677888865433
No 72
>PLN02532 asparagine-tRNA synthetase
Probab=94.94 E-value=0.2 Score=54.77 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=37.7
Q ss_pred cCCcccccchhHHHHHHHhcCCeEEEEeeEEecCCCC-CCCCcceEEEEEE
Q 014218 154 DSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSID-STHYPVFHQMEGV 203 (428)
Q Consensus 154 ~e~~~LRtsL~~~ll~~l~~~~~~FEiG~Vyr~d~~d-~~~~p~f~q~~g~ 203 (428)
.....|+.|-.-++--++.+--++||+|.+||.+..+ ..|+++|.+++.-
T Consensus 369 g~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~E 419 (633)
T PLN02532 369 SRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVE 419 (633)
T ss_pred CCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeee
Confidence 4567787777666555444558899999999987776 5799999877654
No 73
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=94.70 E-value=0.13 Score=50.09 Aligned_cols=132 Identities=9% Similarity=0.030 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhh-hcCC-C--CCCcccccc-ccccccCCcccccchhHHHHHH
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFD-DVLV-P--ADHVSRSYN-DTYYVDSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd-~L~~-p--~dhp~r~~~-~np~~~e~~~LRtsL~~~ll~~ 170 (428)
.-.+.+.+.+++.+... ||+|+. .|.+...+.+. .-+. + .+..-++.. .+-..++.-+||+.--+.+...
T Consensus 33 ~l~~~l~~~~~~~~~~~---G~~ev~--~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~ 107 (261)
T cd00778 33 AIWENIQKILDKEIKET---GHENVY--FPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPM 107 (261)
T ss_pred HHHHHHHHHHHHHHHHc---CCEEEE--CCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHH
Confidence 34456777778888777 999996 78775544332 1111 1 011111100 0001124578888844443333
Q ss_pred Hh--------cCCeEEEEeeEEecCCCCCCC---CcceEEEEEE-EEEecCCccccCcccccccHHHHHHHHHHHHHHh-
Q 014218 171 LK--------EHNHFLVTGDVYRRDSIDSTH---YPVFHQMEGV-SIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL- 237 (428)
Q Consensus 171 l~--------~~~~~FEiG~Vyr~d~~d~~~---~p~f~q~~g~-~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L- 237 (428)
++ .|++++++|.|||.+..+... ...|.+.++- ....++ .....+.++....+.++..|
T Consensus 108 ~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e--------~~~~~~~~~~~~~~~i~~~ll 179 (261)
T cd00778 108 FSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEE--------EAEEEVLQILDLYKEFYEDLL 179 (261)
T ss_pred HHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHH--------HHHHHHHHHHHHHHHHHHHhC
Confidence 32 589999999999976543211 1233333331 111111 12224567788888888888
Q ss_pred ccc
Q 014218 238 FGA 240 (428)
Q Consensus 238 ~~~ 240 (428)
+++
T Consensus 180 gl~ 182 (261)
T cd00778 180 AIP 182 (261)
T ss_pred CCe
Confidence 764
No 74
>PLN02221 asparaginyl-tRNA synthetase
Probab=94.65 E-value=0.38 Score=52.13 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=36.5
Q ss_pred cCCcccccchhHHHHHHHhcCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEE
Q 014218 154 DSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSI 205 (428)
Q Consensus 154 ~e~~~LRtsL~~~ll~~l~~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~ 205 (428)
.....|..|-.-++--++.+--++||+|.+||.... +..|+++|.+++.-..
T Consensus 306 g~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Ema 358 (572)
T PLN02221 306 GRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIA 358 (572)
T ss_pred CCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCCCCcccccccceeeeee
Confidence 345566666555544444356889999999998775 5789999988776433
No 75
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=94.53 E-value=0.18 Score=50.57 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~ 172 (428)
-...+++.+++.|... ||.++. +|++...+.|...+ +..+. ..+. ..+.-+||+=+++.......
T Consensus 10 ~~~~i~~~l~~~~~~~---Gy~~i~--tP~le~~~~~~~~~----~~~~~--~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 10 RKEEIERQLQDVFRSW---GYQEII--TPTLEYLDTLSAGG----GILNE--DLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred HHHHHHHHHHHHHHHc---CCeecc--CcchhhHHHhcccC----Ccchh--ceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 3467888888888887 999996 88886554443322 11111 1111 13456899966666555432
Q ss_pred -------cCCeEEEEeeEEecCCCCCCCCcceEEEEE
Q 014218 173 -------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEG 202 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g 202 (428)
.+.|+|.+|+|||.+.....+...+.|...
T Consensus 79 ~~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~ 115 (314)
T TIGR00443 79 TRLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGV 115 (314)
T ss_pred HhcccCCCCeEEEEeceEeecCCCcCCCcccccccce
Confidence 478999999999976644444555566533
No 76
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=94.43 E-value=0.19 Score=54.54 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh-
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~- 172 (428)
.+.+.+.+++.+... ||+|+. +|++...+-|...+- -++. .. ..|. ..+.-+||+...|+......
T Consensus 209 ~~~l~~~~~~~~~~~---Gy~ev~--tP~le~~~l~~~sg~-~~~~-~~--~my~~~d~~~~~~~LRP~~~~~~~~~~~~ 279 (575)
T PRK12305 209 RREIEDYLRKEHLKR---GYEFVY--TPHIGKSDLWKTSGH-LDNY-KE--NMFPPMEIDEEEYYLKPMNCPGHILIYKS 279 (575)
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCccCCHHHHhhcCC-cccc-hh--hcccccccCCceEEEecCCCHHHHHHHhc
Confidence 455666666667666 999996 898876666655321 0110 00 1222 24567899988888665553
Q ss_pred -------cCCeEEEEeeEEecCCCCC----CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 -------EHNHFLVTGDVYRRDSIDS----THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~----~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.|||...... ..+..|+|..+-.++.++.. .-.+.++...+..++..|++
T Consensus 280 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~--------~~e~~e~i~l~~~~~~~lgl 349 (575)
T PRK12305 280 RLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQI--------EDEILKVLDFVLELLKDFGF 349 (575)
T ss_pred ccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHH--------HHHHHHHHHHHHHHHHHcCC
Confidence 4889999999999765421 13456777766544332210 11124555555666666654
No 77
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=94.43 E-value=0.25 Score=52.51 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc--------ccCCcccccchhHHHHH
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY--------VDSQTVLRCHTSAHQAE 169 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~--------~~e~~~LRtsL~~~ll~ 169 (428)
...+.+.+++.+... ||+|+. .|.+...+.+..-+ +|.-.-....+. .++.-+||+..-+.+..
T Consensus 41 ~~~I~~~i~~~~~~~---G~~ev~--~P~l~~~~~~~~~~---~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~ 112 (472)
T TIGR00408 41 WKNIQKILRNILDEI---GHEEVY--FPMLIPESELAKEK---DHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYP 112 (472)
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCccCCHHHHHhhc---chhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHH
Confidence 456667777777776 999986 88875554444311 121000001122 23566899888888876
Q ss_pred HHh--------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEE-EEEecCCccccCcccccccHHHHHHHHHHHHH-H
Q 014218 170 LLK--------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGV-SIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR-H 236 (428)
Q Consensus 170 ~l~--------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~-~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~-~ 236 (428)
.++ .|++++++|.|||.+..+.. ....|.+.++- ....+ +...--+..+......++. .
T Consensus 113 ~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~--------e~a~~e~~~~l~~y~~i~~~~ 184 (472)
T TIGR00408 113 MFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATA--------EEAEEQVLRALDIYKEFIENS 184 (472)
T ss_pred HHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 654 58999999999997654311 11223333331 11010 0112234566667777776 6
Q ss_pred hcccceeEEee--ccCCCCCCCceEEEEE-CCeeEEEeeeeeccHHHHHHcCCCC------c-eEEEEEech-hHHHHhh
Q 014218 237 LFGAVEMRWVD--TYFPFTNPSYELEIFF-KENWLEVLGCGVTEQEILKRSGKLN------N-VAWAFGLGL-ERLAMVL 305 (428)
Q Consensus 237 L~~~~~~~~~~--~~~p~~hPg~~a~I~~-~g~~iGvlG~G~ihP~vl~~~gi~~------~-v~~afEL~L-e~L~m~~ 305 (428)
|+++......+ ..++.-.-.+.+++++ +|+++++-.+-.+.....++|||.. + ..+-+.+|+ +|+...+
T Consensus 185 lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dgr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s~Gi~eRli~~l 264 (472)
T TIGR00408 185 LAIPYFVGRKPEWEKFAGAEYTWAFETIMPDGRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGISTRVIGAL 264 (472)
T ss_pred cCCeEEEEecCchhhcCCccceEEEeEEEcCCCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEccccHHHHHHHHH
Confidence 76643221111 1122212224456655 4655544221122234456777752 1 134456666 8986554
No 78
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=94.38 E-value=0.25 Score=53.43 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHHHHHHHh-
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ll~~l~- 172 (428)
.+.+.+.+++.+... ||+|+. +|++...+-|..-+.- ++ ...+.|.. ++.-+||+...++......
T Consensus 203 ~~~i~~~~~~~~~~~---G~~ev~--tP~l~~~~l~~~sg~~-~~---~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 203 RNLLEDFVRQKQIKY---GYMEVE--TPIMYDLELWEISGHW-DN---YKERMFPFTELDNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCccCCHHHHHhcCCc-cc---chhhcceeccCCCceEEEecCCCHHHHHHHhC
Confidence 566777777777776 999996 8888766666653311 11 11122322 3567899999988777664
Q ss_pred -------cCCeEEEEeeEEecCCCCC----CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 -------EHNHFLVTGDVYRRDSIDS----THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~----~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.+||.+.... ..+..|+|.++-.+..+++ ....+.++......++..|++
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~--------~~~e~~~~i~~~~~~~~~lgl 343 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQ--------IKEEFKNQFRLIQKVYSDFGF 343 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHH--------HHHHHHHHHHHHHHHHHHcCC
Confidence 4899999999999764321 1345688877655532111 122334455666666666665
No 79
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=94.37 E-value=1.8 Score=46.21 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=82.0
Q ss_pred cCCcccccchhHHHHHHHh--------cCCeEEE-EeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccc
Q 014218 154 DSQTVLRCHTSAHQAELLK--------EHNHFLV-TGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEY 221 (428)
Q Consensus 154 ~e~~~LRtsL~~~ll~~l~--------~~~~~FE-iG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~ 221 (428)
++..+||+.--..+...++ .|++++. .|.|||....... ..-.|++.+++.+.++++ ...
T Consensus 307 ~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEe--------a~e 378 (520)
T TIGR00415 307 DPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEE--------TEE 378 (520)
T ss_pred CCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHH--------HHH
Confidence 3356688877777766664 3788999 7799998653211 223567778877654322 122
Q ss_pred cHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCce---------------EEEEE-------CCeeEEEeeeeeccH-
Q 014218 222 AAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYE---------------LEIFF-------KENWLEVLGCGVTEQ- 278 (428)
Q Consensus 222 ~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~---------------a~I~~-------~g~~iGvlG~G~ihP- 278 (428)
-...+.+..+.++..|++ .++...+..||+-.|.. .++++ +|. .+..|-.|-
T Consensus 379 ~~e~mle~~~~~l~~L~L--pyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g~---AlqS~n~Hg~ 453 (520)
T TIGR00415 379 IRDKTLELAEDAADELDL--EWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKGV---AVTSANVHGT 453 (520)
T ss_pred HHHHHHHHHHHHHHHcCC--CeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCCCCCc---EEEEeechhc
Confidence 245677777888888876 45656666676555533 34444 333 222356662
Q ss_pred HHHHHcCCCCc---e--EEEEEechhHHHHhh
Q 014218 279 EILKRSGKLNN---V--AWAFGLGLERLAMVL 305 (428)
Q Consensus 279 ~vl~~~gi~~~---v--~~afEL~Le~L~m~~ 305 (428)
...+.|+|... . .-.++++++|++..+
T Consensus 454 hF~k~F~I~~~~~~~a~ttC~G~gleR~i~Al 485 (520)
T TIGR00415 454 HFIEGFRIKDAKGLNIWTGCTGIGISRWIVGF 485 (520)
T ss_pred ccccccCcccCCCCeEEEeeeeccHHHHHHHH
Confidence 23445666521 1 124688999986543
No 80
>PLN02678 seryl-tRNA synthetase
Probab=94.33 E-value=0.93 Score=47.80 Aligned_cols=131 Identities=13% Similarity=0.106 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhccC-CCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccc---hhHHHHH
Q 014218 98 IGILKNAIYEYFDSNY-PNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCH---TSAHQAE 169 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRts---L~~~ll~ 169 (428)
...|.+.|.+++.... ..||+++. +|.+....-+..-|-.+.. ..+.|.+ ++..+++|+ +.+.-.+
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~--~P~lv~~~~~~~sG~~~~f----~e~my~i~~~~~~~yLi~TaE~~l~~~h~~ 246 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQ--TPFFMRKDVMAKCAQLAQF----DEELYKVTGEGDDKYLIATSEQPLCAYHRG 246 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEE--CcccccHHHHhhcCCcccc----hhcCceecCCCCceeeecccccccChHHhc
Confidence 3566667666653321 13999996 7877656555555543321 1234444 345667764 5554443
Q ss_pred HHh----cCCeEEEEeeEEecCCC----CCCC---CcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 170 LLK----EHNHFLVTGDVYRRDSI----DSTH---YPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 170 ~l~----~~~~~FEiG~Vyr~d~~----d~~~---~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
-.. .|+++++.+.+||+... +... .-.|++.+.+....+++- ....-+.++....+.++..|+
T Consensus 247 ~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~------~s~~~~e~~l~~~~~i~~~L~ 320 (448)
T PLN02678 247 DWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGN------ESWEMHEEMLKNSEDFYQSLG 320 (448)
T ss_pred ccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCch------hHHHHHHHHHHHHHHHHHHcC
Confidence 332 69999999999998654 2112 234556666655443210 012346789999999999998
Q ss_pred cc
Q 014218 239 GA 240 (428)
Q Consensus 239 ~~ 240 (428)
++
T Consensus 321 lp 322 (448)
T PLN02678 321 IP 322 (448)
T ss_pred CC
Confidence 75
No 81
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.25 E-value=0.27 Score=50.95 Aligned_cols=101 Identities=10% Similarity=0.019 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCC-ccccccccccccCCcccccchhHHHHHHHh-
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADH-VSRSYNDTYYVDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dh-p~r~~~~np~~~e~~~LRtsL~~~ll~~l~- 172 (428)
.....+.+.|++.|... ||.++. +|++.-.+.|..- +-..+. ..+. ..+...+.-.||+=+++.......
T Consensus 22 ~~~~~i~~~l~~~f~~~---Gy~~I~--tP~~E~~e~~~~~~g~~~~~~~y~f--~D~~~g~~l~LRpD~T~~iaR~~a~ 94 (392)
T PRK12421 22 QKIERLRRRLLDLFASR---GYQLVM--PPLIEYLESLLTGAGQDLKLQTFKL--IDQLSGRLMGVRADITPQVARIDAH 94 (392)
T ss_pred HHHHHHHHHHHHHHHHc---CCEEee--CcchhhHHHHhccCCccchhceEEE--EcCCCCcEEEECCcCCHHHHHHHHh
Confidence 44567888999999888 999997 8888644555321 221111 1111 111122344799999998888653
Q ss_pred -----cCCeEEEEeeEEecCCCCCCCCcceEEEEEE
Q 014218 173 -----EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGV 203 (428)
Q Consensus 173 -----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~ 203 (428)
.+.|+|-+|+|||.+......+..|+|.-.-
T Consensus 95 ~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvE 130 (392)
T PRK12421 95 LLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAE 130 (392)
T ss_pred hcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceE
Confidence 4789999999998654333345667775443
No 82
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=94.05 E-value=0.41 Score=50.61 Aligned_cols=140 Identities=17% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCcccccchhHHHHHHHh---------cCCeEEEEeeEEecCCCCCCC---CcceEEEEEEEEEecCCccccCccccccc
Q 014218 155 SQTVLRCHTSAHQAELLK---------EHNHFLVTGDVYRRDSIDSTH---YPVFHQMEGVSIFYPDEWGAAGLDATEYA 222 (428)
Q Consensus 155 e~~~LRtsL~~~ll~~l~---------~~~~~FEiG~Vyr~d~~d~~~---~p~f~q~~g~~~~~~~~w~~~~~~~~~~~ 222 (428)
..-+||+-|.-++.-.++ .|+++.|+|.|||........ ...|.|.++-....+++- .--
T Consensus 158 ~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~--------~~e 229 (456)
T PRK04173 158 SLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTD--------NEW 229 (456)
T ss_pred cceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChH--------HHH
Confidence 456788877777665553 489999999999976443322 256778887655444331 111
Q ss_pred HHHHHHHHHHHHHHhccc-ceeEEeec----cCCCCCCCceEEEEE--CCeeEEEeee-eeccHHHH-----HHcCCC--
Q 014218 223 AKDLKRCLEGLARHLFGA-VEMRWVDT----YFPFTNPSYELEIFF--KENWLEVLGC-GVTEQEIL-----KRSGKL-- 287 (428)
Q Consensus 223 f~dLKg~Le~Ll~~L~~~-~~~~~~~~----~~p~~hPg~~a~I~~--~g~~iGvlG~-G~ihP~vl-----~~~gi~-- 287 (428)
+......+..++..++.+ ..+++... .+.+....+.+++.. +..|.+..|+ +...-++. ..++++
T Consensus 230 ~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~ 309 (456)
T PRK04173 230 FAYWIELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYF 309 (456)
T ss_pred HHHHHHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEE
Confidence 345555666677777764 22443321 122233334444432 2346554442 33333332 234543
Q ss_pred ---------CceEEEEEechhHHH
Q 014218 288 ---------NNVAWAFGLGLERLA 302 (428)
Q Consensus 288 ---------~~v~~afEL~Le~L~ 302 (428)
.|+++-..+|++|+.
T Consensus 310 ~~~~~~~~~~P~vi~~siGieRl~ 333 (456)
T PRK04173 310 DDETTGEKYIPYVIEPSAGLDRLL 333 (456)
T ss_pred ecCCCCceeeeEEEEecccHHHHH
Confidence 144455667899953
No 83
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=93.98 E-value=0.2 Score=48.75 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-----
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK----- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~----- 172 (428)
.+.+.+.+++.|... ..||.|+. +|++....-|..-.-|.|+ .++..+||+.+.++..-.+.
T Consensus 35 ~~~i~~~~~~~~~~~-g~~~~~i~--tP~i~~~~mf~~~~g~~d~----------~~~~~~Lrp~~~~~~~~~~~~~~~~ 101 (254)
T cd00774 35 KNNIKSAWRKSFVLE-EEDMLEID--SPIITPELMFKTSIGPVES----------GGNLGYLRPETAQGIFVNFKNLLEF 101 (254)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEEe--ccccCCHHHheeeecccCC----------CCcccccCCcccchHHHHHHHHHHH
Confidence 456777777777655 01499997 8988766433321001111 12356899988865443221
Q ss_pred ----cCCeEEEEeeEEecCCCCC---CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 ----EHNHFLVTGDVYRRDSIDS---THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d~---~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|.+++++|+|||.+.... .-+..|.|+++-....+++ ..-.+...+.....++..++.
T Consensus 102 ~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~--------~~e~~~~v~~~~~~~l~~~G~ 167 (254)
T cd00774 102 NRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEK--------SHPWFDYWADQRLKWLPKFAQ 167 (254)
T ss_pred hCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCC--------chHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999764333 2345666766655543332 112355677777777777764
No 84
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=93.98 E-value=0.65 Score=48.55 Aligned_cols=128 Identities=14% Similarity=0.181 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhccC-CCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh----
Q 014218 99 GILKNAIYEYFDSNY-PNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~---- 172 (428)
..+.+.|.+++.... ..||+++. .|.+...+.+..-|..++- ..+.|.+ ++..+|+++--..+....+
T Consensus 173 ~~l~~aL~~~~~~~~~~~G~~~v~--~P~lv~~~~~~~~G~~~~f----~~~~y~i~~~~~~L~pTsE~~~~~~~~~~i~ 246 (418)
T TIGR00414 173 AKLERALINFMLDLLEKNGYQEIY--PPYLVNEESLDGTGQLPKF----EEDIFKLEDTDLYLIPTAEVPLTNLHRNEIL 246 (418)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEe--CCccccHHHHhhcCccccc----cccceEecCCCEEEEeCCcHHHHHHHhCcCC
Confidence 344555544443221 12999995 8887666666666543321 1123333 2445677664333444443
Q ss_pred ----cCCeEEEEeeEEecCCCCC---C----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 ----EHNHFLVTGDVYRRDSIDS---T----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d~---~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++++|.+||...... + ..-.|++.++.....+++ ...-+..+....+.++..|+++
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~--------s~~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEE--------SAEELEEMTSDAEQILQELELP 317 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHH--------HHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999999998764311 1 123466677755543322 2234678888899999988875
No 85
>PLN02908 threonyl-tRNA synthetase
Probab=93.95 E-value=0.3 Score=54.32 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc---ccCCcccccchhHHHHHHHh--
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY---VDSQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~---~~e~~~LRtsL~~~ll~~l~-- 172 (428)
.+.+.+.+++.+... ||+|+. +|.+...+-+..-|--+ | -..+.|. -++...||+..-|+....+.
T Consensus 324 ~~~l~~~~~~~~~~~---G~~ev~--tP~l~~~~l~~~sGh~~-~---~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~ 394 (686)
T PLN02908 324 YNKLMDFIREQYWER---GYDEVI--TPNIYNMDLWETSGHAA-H---YKENMFVFEIEKQEFGLKPMNCPGHCLMFAHR 394 (686)
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCccccHHHHhhcCCcc-c---cchhccEEecCCeeEEEcCCCcHHHHHHHhcc
Confidence 355666666666666 999996 88876666555433211 1 1112222 23667899999998877664
Q ss_pred ------cCCeEEEEeeEEecCCCC----CCCCcceEEEEEEEEEe
Q 014218 173 ------EHNHFLVTGDVYRRDSID----STHYPVFHQMEGVSIFY 207 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~d----~~~~p~f~q~~g~~~~~ 207 (428)
.|++++++|.|||.+... ..-+..|.|.++-..+.
T Consensus 395 ~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~ 439 (686)
T PLN02908 395 VRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCR 439 (686)
T ss_pred ccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcC
Confidence 488999999999976542 12345677777765543
No 86
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=93.75 E-value=1.9 Score=46.19 Aligned_cols=143 Identities=21% Similarity=0.255 Sum_probs=86.4
Q ss_pred cCCcccccchhHHHHHHHh--------cCCeEEE-EeeEEecCCCCC---CCCcceEEEEEEEEEecCCccccCcccccc
Q 014218 154 DSQTVLRCHTSAHQAELLK--------EHNHFLV-TGDVYRRDSIDS---THYPVFHQMEGVSIFYPDEWGAAGLDATEY 221 (428)
Q Consensus 154 ~e~~~LRtsL~~~ll~~l~--------~~~~~FE-iG~Vyr~d~~d~---~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~ 221 (428)
+...+||+..=|+....++ .|+++++ .|.|||...... .-.-.|++.+++++..+++ ..-
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEq--------s~e 378 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQ--------VEE 378 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHH--------HHH
Confidence 4456899998888887765 4889999 889999875321 1234678888887665433 111
Q ss_pred cHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCc---------------eEEEEE-----CCeeEEEeeeeeccHHHH
Q 014218 222 AAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSY---------------ELEIFF-----KENWLEVLGCGVTEQEIL 281 (428)
Q Consensus 222 ~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~---------------~a~I~~-----~g~~iGvlG~G~ihP~vl 281 (428)
-+..+....+.+++.|++++ ++ +.+..||+-.|+ ..++++ +|+|+++-.|..-...-.
T Consensus 379 e~e~ll~~~e~i~~~LgLp~-~r-~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~fa 456 (517)
T PRK00960 379 IRDELLKYAHILAEKLDLEY-WR-EVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFV 456 (517)
T ss_pred HHHHHHHHHHHHHHHcCCCc-eE-EecccccccccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhh
Confidence 23455566677777777641 22 223345544432 445554 367777766543344456
Q ss_pred HHcCCCC----ce-EEEEEechhHHHHhhc
Q 014218 282 KRSGKLN----NV-AWAFGLGLERLAMVLF 306 (428)
Q Consensus 282 ~~~gi~~----~v-~~afEL~Le~L~m~~~ 306 (428)
+.++|+. .+ .-..+++++|++..++
T Consensus 457 rrfnIk~~~g~~~hTnctG~g~eR~l~AlL 486 (517)
T PRK00960 457 EGFNIKDYKGRKLWTGCTGYGLERWVIGFL 486 (517)
T ss_pred HhhCcccCCCCeEeecceeeHHHHHHHHHH
Confidence 6777762 11 1246788999875533
No 87
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=93.71 E-value=0.4 Score=52.67 Aligned_cols=125 Identities=12% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh-
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~- 172 (428)
.+.+.+.+++.+... ||+|+. +|++...+-|...|- -++.. . ..|. ..+.-+||+...|+......
T Consensus 273 ~~~i~~~~~~~~~~~---Gy~ei~--tP~le~~~l~~~~g~-~~~~~-~--~my~~~d~~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 273 RRELERYIRRKLRKA---GYQEVK--TPQILDRELWETSGH-WDHYR-E--NMFPTTESDGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred HHHHHHHHHHHHHHC---CCEEEE--CCeeCCHHHHHhcCC-hhhhh-h--ccceeecCCCcEEEEecCCcHHHHHHHhC
Confidence 456666666667666 999996 899876666655321 01111 1 1222 24567999999998666554
Q ss_pred -------cCCeEEEEeeEEecCCCCC----CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 -------EHNHFLVTGDVYRRDSIDS----THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~----~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|+++|++|.|||.+.... ..+..|+|..+-.+..++. ...++.++-..+..++..|++
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~--------~~~e~~eii~l~~~~~~~lg~ 413 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQ--------IEEEVKKVIDLILDVYKDFGF 413 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHH--------HHHHHHHHHHHHHHHHHHcCC
Confidence 4899999999999765421 1235677766554432111 111235566666666666665
No 88
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=93.62 E-value=1.7 Score=47.24 Aligned_cols=128 Identities=9% Similarity=0.010 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ll~~l~ 172 (428)
-.+.+.+.+++.|... ||+|+. .|.+...+.|..-|.-+ + ...+.|.. ++.-+||+.-.+.....++
T Consensus 49 ~~~~i~~~i~~~~~~~---G~~ei~--~P~l~~~~l~~~sg~~~-~---~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~ 119 (565)
T PRK09194 49 VLRKIENIVREEMNKI---GAQEVL--MPALQPAELWQESGRWE-E---YGPELLRLKDRHGRDFVLGPTHEEVITDLVR 119 (565)
T ss_pred HHHHHHHHHHHHHHHc---CCEEEE--CcccCcHHHHhhcCCcc-c---cchhceEEecCCCCEEEECCCChHHHHHHHH
Confidence 3467888888888887 999996 89887666665433111 0 00012222 3456888855555444443
Q ss_pred --------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 --------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 --------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++.+|.+||.+..+.. .+..|+|.++-.....+. .....+..+......+++.|+++
T Consensus 120 ~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~-------~a~~~~~~~~~~~~~i~~~lgl~ 191 (565)
T PRK09194 120 NEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEE-------SLDETYDAMYQAYSRIFDRLGLD 191 (565)
T ss_pred hhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChH-------HHHHHHHHHHHHHHHHHHHhCCc
Confidence 48999999999997632222 345677766655432111 01222355666778888888864
No 89
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=93.51 E-value=0.88 Score=47.50 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~ 172 (428)
-...+.+.+++.|... ||.|+. +|++...+.|..-. ......+. ..+. ..+.-+||+=+++.....+.
T Consensus 20 ~~~~i~~~l~~~f~~~---Gy~~i~--tP~lE~~~~~~~~~-~~~~~~~~--~~~~~~D~~g~~l~LRpD~T~~iaR~va 91 (423)
T PRK12420 20 LRNKIKRALEDVFERY---GCKPLE--TPTLNMYELMSSKY-GGGDEILK--EIYTLTDQGKRDLALRYDLTIPFAKVVA 91 (423)
T ss_pred HHHHHHHHHHHHHHHc---CCEecc--ccccchHHHHhccc-CCCccccc--ceEEEecCCCceecccccccHHHHHHHH
Confidence 4567888888888887 999996 88886555443210 00111111 1122 23356899999888776553
Q ss_pred ------cCCeEEEEeeEEecCCCCCCCCcceEEEE
Q 014218 173 ------EHNHFLVTGDVYRRDSIDSTHYPVFHQME 201 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~ 201 (428)
.++|+|.+|+|||.+.....++..|+|.-
T Consensus 92 ~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g 126 (423)
T PRK12420 92 MNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCD 126 (423)
T ss_pred hCcCCCCCeeEEEEcceECCCCCCCCccceeEECC
Confidence 37799999999997654434555666643
No 90
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.64 Score=49.57 Aligned_cols=110 Identities=21% Similarity=0.316 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccC--chhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh---cC
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVS--VKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---EH 174 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs--~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---~~ 174 (428)
++...||++|... ||.|+. +|++| +.+.--...+ |+|+.-.. +..|.. +|.+.+.+- +=
T Consensus 146 kv~~~iR~~ld~~---gF~EiE--TPiLtkSTPEGARDfLV----PSRv~~G~-----FYALPQ--SPQlfKQLLMvsGf 209 (585)
T COG0173 146 KVTKAIRNFLDDQ---GFLEIE--TPILTKSTPEGARDFLV----PSRVHPGK-----FYALPQ--SPQLFKQLLMVAGF 209 (585)
T ss_pred HHHHHHHHHHhhc---CCeEee--cCccccCCCcccccccc----ccccCCCc-----eeecCC--CHHHHHHHHHHhcc
Confidence 4556788999888 999997 89884 3443333333 45552222 334443 355555543 77
Q ss_pred CeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 175 NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 175 ~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|+|-|++|||-........|+|.|...-. ..++-.|+..++|.++..++.
T Consensus 210 dRYyQIarCFRDEDlRaDRQPEFTQiD~Em--------------SF~~~edv~~~~E~l~~~vf~ 260 (585)
T COG0173 210 DRYYQIARCFRDEDLRADRQPEFTQIDLEM--------------SFVDEEDVMELIEKLLRYVFK 260 (585)
T ss_pred cceeeeeeeecccccccccCCcceeEeEEe--------------ecCCHHHHHHHHHHHHHHHHH
Confidence 899999999985443334459999875432 244567888899999887763
No 91
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=93.18 E-value=0.54 Score=48.64 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-----cCCcccccchhHHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-----DSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-----~e~~~LRtsL~~~ll~~l 171 (428)
-...+.+.+++.|... ||.++. +|++...+.|..-. .+.... ..+.. .+.-.||+=+++.....+
T Consensus 19 ~~~~i~~~l~~~f~~~---Gy~~i~--tP~lE~~e~~~~~~---g~~~~~--~~~~f~d~~~g~~l~LRpD~T~~iaR~~ 88 (391)
T PRK12292 19 KIEEIRRRLLDLFRRW---GYEEVI--TPTLEYLDTLLAGG---GAILDL--RTFKLVDQLSGRTLGLRPDMTAQIARIA 88 (391)
T ss_pred HHHHHHHHHHHHHHHc---CCceee--CcchhhHHHHhccC---Cccchh--hhEEEeecCCCCEEEECCCCcHHHHHHH
Confidence 3467888888888887 999996 88886444442211 111111 12222 234589999999888866
Q ss_pred h-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEE
Q 014218 172 K-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGV 203 (428)
Q Consensus 172 ~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~ 203 (428)
. .+.|+|.+|+|||.+......+..|+|.-.=
T Consensus 89 a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~E 127 (391)
T PRK12292 89 ATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVE 127 (391)
T ss_pred HHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceE
Confidence 3 4689999999999765544456667776433
No 92
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=93.07 E-value=1.1 Score=48.69 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCC---CccccccccccccCCcccccc----hhHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPAD---HVSRSYNDTYYVDSQTVLRCH----TSAHQAE 169 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~d---hp~r~~~~np~~~e~~~LRts----L~~~ll~ 169 (428)
-++.+.+.+++.|... ||+|+. .|++...+-+..-+.-+. ..-+.. . -.++.-+||+. +.+...+
T Consensus 49 v~~~I~~~i~~~~~~~---G~~ei~--~P~l~~~el~~~sg~~~~~~~emf~~~--d-r~~~~l~LrPT~Ee~~t~~~~~ 120 (568)
T TIGR00409 49 VLKKVENIVREEMNKD---GAIEVL--LPALQPAELWQESGRWDTYGPELLRLK--D-RKGREFVLGPTHEEVITDLARN 120 (568)
T ss_pred HHHHHHHHHHHHHHHc---CCEEEE--CCccchHHHHhhcCCCCccchhcEEEe--c-CCCCEEEEcCCCcHHHHHHHHH
Confidence 3567888889999888 999996 888866555554332110 111110 0 12345789985 4444443
Q ss_pred HHh----cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 170 LLK----EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 170 ~l~----~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.+. .|++++.+|.+||.+..+.. ....|+|.++-.+..... .....+..+......+++.|+++
T Consensus 121 ~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~-------~a~~e~~~~~~~y~~if~~LgL~ 191 (568)
T TIGR00409 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEE-------SLDATYQKMYQAYSNIFSRLGLD 191 (568)
T ss_pred HHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChH-------HHHHHHHHHHHHHHHHHHHhCCc
Confidence 443 68999999999986522222 245666666654432111 11122455667778888988864
No 93
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=93.07 E-value=0.92 Score=49.30 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=34.9
Q ss_pred CCcccccchhHHHHHHHhcCCeEEEEeeEEecCCCC-CCCCcceEEEEEEEE
Q 014218 155 SQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSID-STHYPVFHQMEGVSI 205 (428)
Q Consensus 155 e~~~LRtsL~~~ll~~l~~~~~~FEiG~Vyr~d~~d-~~~~p~f~q~~g~~~ 205 (428)
....|+.|--=++-.++.+--++|++|++||....+ ..|+++|.+++.-..
T Consensus 324 k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~a 375 (586)
T PTZ00425 324 KQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIA 375 (586)
T ss_pred cceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEe
Confidence 444466665444443433678899999999976653 579999988876543
No 94
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=92.38 E-value=0.89 Score=49.17 Aligned_cols=97 Identities=15% Similarity=0.055 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc---ccCCcccccchhHHHHHHHh---
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY---VDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~---~~e~~~LRtsL~~~ll~~l~--- 172 (428)
+.+.+.+++.+... ||+|+. +|.+...+-+..-| |--......+. .++.-.||+...|+.....+
T Consensus 172 ~~L~~~~r~~~~~~---Gy~eV~--TP~i~~~eL~k~SG----h~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~ 242 (545)
T PRK14799 172 NELIAFMREINDSM---GYQEVY--TSHVFKTDIWKISG----HYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKP 242 (545)
T ss_pred HHHHHHHHHHHHHc---CCeEEE--CCccchHHHHhhcc----ccccchhhcceeeccCceEEeccCCCHHHHHHHhccc
Confidence 34455555555565 999996 88875444444322 21000001111 13567899999998887764
Q ss_pred -----cCCeEEEEeeEEecCCCCC----CCCcceEEEEEEE
Q 014218 173 -----EHNHFLVTGDVYRRDSIDS----THYPVFHQMEGVS 204 (428)
Q Consensus 173 -----~~~~~FEiG~Vyr~d~~d~----~~~p~f~q~~g~~ 204 (428)
.|++++|+|.|||.+.... .-+..|+|.++=.
T Consensus 243 ~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi 283 (545)
T PRK14799 243 RTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI 283 (545)
T ss_pred cChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE
Confidence 5889999999999876543 2345666655543
No 95
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=92.34 E-value=1 Score=44.72 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCCccccccccccccCCcccccchhHHHHHHHh----
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---- 172 (428)
...+.+.+++.|... ||.++. +|++...+.|..- +...+...+. ... ..+.-+||+=+++.....+.
T Consensus 13 ~~~i~~~l~~~f~~~---Gy~~i~--~P~le~~~~~~~~~~~~~~~~~~~--~D~-~G~~l~LR~D~T~~iaR~~a~~~~ 84 (311)
T PF13393_consen 13 RERIESKLREVFERH---GYEEIE--TPLLEYYELFLDKSGEDSDNMYRF--LDR-SGRVLALRPDLTVPIARYVARNLN 84 (311)
T ss_dssp HHHHHHHHHHHHHHT---T-EE-B----SEEEHHHHHCHSSTTGGCSEEE--ECT-TSSEEEE-SSSHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCeEeecHHhhhccccchhhhEEE--Eec-CCcEeccCCCCcHHHHHHHHHhcC
Confidence 357888899999888 999997 8888655544432 2211122222 222 45566899999998888765
Q ss_pred --cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 173 --EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 173 --~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
.+.|++.+|+|||.......+.-.++|. |+=+
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~-g~Ei 118 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPGKGRPREFYQC-GFEI 118 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTTTTBESEEEEE-EEEE
T ss_pred cCCCceEEEEcceeeccccCCCCCceeEEE-EEEE
Confidence 5689999999999765433333444554 4433
No 96
>PLN02972 Histidyl-tRNA synthetase
Probab=91.57 E-value=1.8 Score=48.45 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~ 172 (428)
-...+.+.|++.|... ||.++. +|++...+.|... ..++. . ..|. ..+.-.||+=+++.....+.
T Consensus 343 ~re~I~~~L~~vFk~h---Gy~eI~--TPvfE~~Ell~~k-~Ged~--k---~mY~f~D~gGr~LaLRPDlTvPiAR~vA 411 (763)
T PLN02972 343 IREKAFSIITSVFKRH---GATALD--TPVFELRETLMGK-YGEDS--K---LIYDLADQGGELCSLRYDLTVPFARYVA 411 (763)
T ss_pred HHHHHHHHHHHHHHHc---CCEEcc--CCcccchHHhhcc-cCcch--h---heEEEECCCCCEEEeCCCChHHHHHHHH
Confidence 3456677777777776 999996 8888655555331 11221 0 1121 23456899999998887764
Q ss_pred ----cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 173 ----EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
.+.++|.+|+|||.+......+..|+|...=.+
T Consensus 412 ~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EII 448 (763)
T PLN02972 412 MNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIA 448 (763)
T ss_pred hCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEE
Confidence 578999999999987654445677888654433
No 97
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.30 E-value=1.8 Score=45.42 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc-----ccCCcccccchhHHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY-----VDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~-----~~e~~~LRtsL~~~ll~~l 171 (428)
....+.+.+++.+... ||.|+. +|++-..+-|.. ...++. .+....-| ..+.-.||+=+++.....+
T Consensus 20 ~~~~i~~~~~~v~~~y---Gf~eI~--TPifE~telf~r-~~Ge~t--d~v~kemY~F~Dkggr~laLRpe~Tapv~R~~ 91 (429)
T COG0124 20 LREYIESTIRKVFESY---GFSEIR--TPIFEYTELFAR-KSGEET--DVVEKEMYTFKDKGGRSLALRPELTAPVARAV 91 (429)
T ss_pred HHHHHHHHHHHHHHHc---CCEecc--CccccchhHhhh-ccCCcc--cccccceEEEEeCCCCEEEecccCcHHHHHHH
Confidence 4467888888888887 999997 888865554542 122221 11112222 3445689999999988877
Q ss_pred h-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 172 K-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 172 ~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
. .|.+++-+|.|||.+......+..|||...=.+
T Consensus 92 ~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~i 132 (429)
T COG0124 92 AENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVI 132 (429)
T ss_pred HhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEe
Confidence 4 579999999999987766667888998654444
No 98
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=89.69 E-value=3.3 Score=44.06 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cC-CC--CCCcccccc-ccccccCCcccccchhHHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VL-VP--ADHVSRSYN-DTYYVDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~-~p--~dhp~r~~~-~np~~~e~~~LRtsL~~~ll~~l 171 (428)
-...+.+.+++.|... ||+++. .|.+...+.+.. -+ ++ .+....+.. .+--.++.-+||+..-+++...+
T Consensus 46 i~~~i~~~~~~~~~~~---G~~ev~--~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~ 120 (477)
T PRK08661 46 IWENIQKILDKLFKET---GHENVY--FPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMY 120 (477)
T ss_pred HHHHHHHHHHHHHHHc---CCEEEE--CCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHH
Confidence 3456667777777776 999986 888765554421 11 10 011111100 11112456789988855555444
Q ss_pred h--------cCCeEEEEeeEEecCCCCCCC----CcceEEEEEEEE-EecCCccccCcccccccHHHHHHHHHHHH-HHh
Q 014218 172 K--------EHNHFLVTGDVYRRDSIDSTH----YPVFHQMEGVSI-FYPDEWGAAGLDATEYAAKDLKRCLEGLA-RHL 237 (428)
Q Consensus 172 ~--------~~~~~FEiG~Vyr~d~~d~~~----~p~f~q~~g~~~-~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll-~~L 237 (428)
+ .|++++++|.|||.... ++ ...|.+.++-.. ..++ ...--+..+......++ ..|
T Consensus 121 ~~~i~SyrdLPlrl~q~~~vfR~E~~--~rgl~R~rEF~~~E~h~~~~~~e--------ea~~e~~~~l~~y~~i~~~~L 190 (477)
T PRK08661 121 KKWIQSYRDLPLLYNQWVNVVRWETK--TRPFLRTREFLWQEGHTAHATEE--------EAEEETLEMLEIYKEFFEDYL 190 (477)
T ss_pred HhhhcchhhcCHHHhcccceeeCCCC--CCCcceeeeEEEcceeeeeCCHH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 3 58999999999997653 22 123333443111 1110 11112355666666777 666
Q ss_pred cccceeEEee--ccCCCCCCCceEEEEECCeeEEEee-eeeccHHHHHHcCCC
Q 014218 238 FGAVEMRWVD--TYFPFTNPSYELEIFFKENWLEVLG-CGVTEQEILKRSGKL 287 (428)
Q Consensus 238 ~~~~~~~~~~--~~~p~~hPg~~a~I~~~g~~iGvlG-~G~ihP~vl~~~gi~ 287 (428)
++++...-.+ ..++.....+.+++++.+.+..-+| +-.+.....++||+.
T Consensus 191 glp~~~~~~~~~ekf~ga~~~~~ie~~~~dgr~~q~gt~~~Lg~~~s~~f~i~ 243 (477)
T PRK08661 191 AIPVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIK 243 (477)
T ss_pred CCeEEEEecChHHhhCCCcceeEEEEEeCCCCEEEEEEecccccchhHhcCCE
Confidence 6542211111 1122233345566666433222232 122334555677775
No 99
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=89.32 E-value=2.2 Score=44.83 Aligned_cols=130 Identities=7% Similarity=-0.039 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHH
Q 014218 95 QHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 95 ~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~ 170 (428)
..-.+.+.+.+++.+... ||+|+. +|++...+.+..-| |--.-..+.+. .++.-+||++--+.....
T Consensus 47 ~~i~~~i~~~i~~~~~~~---G~~ev~--~P~l~~~~l~~~sg----~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~ 117 (439)
T PRK12325 47 LKVLKKIENIVREEQNRA---GAIEIL--MPTIQPADLWRESG----RYDAYGKEMLRIKDRHDREMLYGPTNEEMITDI 117 (439)
T ss_pred HHHHHHHHHHHHHHHHHc---CCEEEE--CCccccHHHHhhcC----CccccchhheEEecCCCCEEEEcCCCcHHHHHH
Confidence 344567888888888887 999996 88887665554332 20000001122 245677887443333333
Q ss_pred Hh--------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 171 LK--------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 171 l~--------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
++ .|++++++|.|||.+..+.. ....|.|.++-....... ...-.+..+......+++.|++
T Consensus 118 ~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~-------~a~~~~~~~~~~~~~i~~~lgl 190 (439)
T PRK12325 118 FRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEE-------GARHSYNRMFVAYLRTFARLGL 190 (439)
T ss_pred HHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHH-------HHHHHHHHHHHHHHHHHHHcCC
Confidence 32 68999999999996533321 233455544433321100 0111345677777777777775
Q ss_pred c
Q 014218 240 A 240 (428)
Q Consensus 240 ~ 240 (428)
+
T Consensus 191 ~ 191 (439)
T PRK12325 191 K 191 (439)
T ss_pred c
Confidence 3
No 100
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=89.27 E-value=3 Score=43.74 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=75.5
Q ss_pred HHHHHHHHHHH-hccC-CCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh---
Q 014218 99 GILKNAIYEYF-DSNY-PNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 99 ~~l~~~I~~~l-~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~--- 172 (428)
..+.+.|.+++ .... ..||+++. .|.+...+.+..-|.-+. -..+.|.+ ++..+|+++--+.+....+
T Consensus 170 a~L~~aL~~~~~~~~~~~~G~~ev~--~P~lv~~~~~~~~G~~~~----f~~~ly~i~~~~~~L~pTsE~~l~~l~~~~~ 243 (425)
T PRK05431 170 ARLERALIQFMLDLHTEEHGYTEVI--PPYLVNEESMYGTGQLPK----FEEDLYKIEDDDLYLIPTAEVPLTNLHRDEI 243 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEe--ccccccHHHHhhcCcccc----chhhceEecCCCEEEEeCCcHHHHHHHhccc
Confidence 45666666665 2222 24999995 787765555554443221 11122323 2445677666555555554
Q ss_pred -----cCCeEEEEeeEEecCCCC----CC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 -----EHNHFLVTGDVYRRDSID----ST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 -----~~~~~FEiG~Vyr~d~~d----~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++++|.+||..... .. ..-.|++.++.....+++ ....+..+....+.++..|+++
T Consensus 244 ~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~--------s~~~~~~~l~~~~~i~~~Lglp 315 (425)
T PRK05431 244 LDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPED--------SYAELEELTANAEEILQKLELP 315 (425)
T ss_pred CCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHH--------HHHHHHHHHHHHHHHHHHcCCc
Confidence 589999999999875432 11 123455666665543322 2234678889999999998875
No 101
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=89.05 E-value=2.6 Score=41.60 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh----
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---- 172 (428)
-...+++.+++.|... ||.++. +|++.-.+.+.. .......+. ... ..+.-+||+=+++.....+.
T Consensus 21 ~~~~i~~~l~~vf~~~---Gy~~I~--tP~lE~~e~~~~--~~~~~~y~~--~D~-~g~~l~LRpD~T~~iaR~~a~~~~ 90 (281)
T PRK12293 21 LKREIENVASEILYEN---GFEEIV--TPFFSYHQHQSI--ADEKELIRF--SDE-KNHQISLRADSTLDVVRIVTKRLG 90 (281)
T ss_pred HHHHHHHHHHHHHHHc---CCeEee--ccceeehhhhcc--cchhceEEE--ECC-CCCEEEECCcCCHHHHHHHHHhcc
Confidence 4567778888888887 999997 888743333311 011111111 111 33456899999988777653
Q ss_pred ---cCCeEEEEeeEEecC
Q 014218 173 ---EHNHFLVTGDVYRRD 187 (428)
Q Consensus 173 ---~~~~~FEiG~Vyr~d 187 (428)
.+.|+|-+|+|||..
T Consensus 91 ~~~~p~r~~Y~g~vfR~~ 108 (281)
T PRK12293 91 RSTEHKKWFYIQPVFRYP 108 (281)
T ss_pred cCCCceeEEEeccEEecC
Confidence 378999999999864
No 102
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=88.33 E-value=4.9 Score=41.43 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~ 172 (428)
.+..+.++|++.|... ||.|+. +|++...+.|-...- ++ .+. ..+. ..+.-+||+=+++.......
T Consensus 6 ~~~~i~~~i~~~f~~~---Gy~~I~--tP~lE~~e~~~~~~g-~~--~~~--~~~~f~D~~G~~l~LRpD~T~piaR~~~ 75 (373)
T PRK12295 6 ASAAAAEALLASFEAA---GAVRVD--PPILQPAEPFLDLSG-ED--IRR--RIFVTSDENGEELCLRPDFTIPVCRRHI 75 (373)
T ss_pred hHHHHHHHHHHHHHHc---CCEEee--CCccccHHHhhhccC-ch--hhc--ceEEEECCCCCEEeeCCCCcHHHHHHHH
Confidence 3567888899999888 999996 888865555532211 11 111 1111 23456899988888776531
Q ss_pred -----cCCeEEEEeeEEecCCCCCCCCcceEEEE
Q 014218 173 -----EHNHFLVTGDVYRRDSIDSTHYPVFHQME 201 (428)
Q Consensus 173 -----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~ 201 (428)
.+.|+|-+|+|||.+. ..+..|+|.-
T Consensus 76 ~~~~~~p~R~~Y~g~VfR~~~---gr~rEf~Q~G 106 (373)
T PRK12295 76 ATAGGEPARYAYLGEVFRQRR---DRASEFLQAG 106 (373)
T ss_pred HcCCCCCeEEEEEccEEECCC---CCCCcceEee
Confidence 6789999999999762 2345667753
No 103
>PLN02320 seryl-tRNA synthetase
Probab=88.18 E-value=5.5 Score=42.58 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhccC-CCCcEEEccCCCccCchhhhhhcCC-CCCCccccccccccc-cCCccc-ccc----hhHHHHHHH
Q 014218 100 ILKNAIYEYFDSNY-PNKFNKFDDLCPIVSVKQNFDDVLV-PADHVSRSYNDTYYV-DSQTVL-RCH----TSAHQAELL 171 (428)
Q Consensus 100 ~l~~~I~~~l~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~-p~dhp~r~~~~np~~-~e~~~L-Rts----L~~~ll~~l 171 (428)
.+.+.|.+++.... ..||+++. +|.+-..+-+..-|. |.. ...+.|.+ ++..+| .|+ .-.|.-+.+
T Consensus 234 ~Le~ALi~f~ld~~~~~Gy~eV~--tP~lv~~~l~~~sG~~p~~----e~~~~y~ie~ed~~Li~TaE~Pl~~~~~~~il 307 (502)
T PLN02320 234 LLEMALVNWTLSEVMKKGFTPLT--TPEIVRSSVVEKCGFQPRG----DNTQVYSIDGSDQCLIGTAEIPVGGIHMDSIL 307 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE--CCccchHHHHHhcCCCccc----ccCceeEECCCceEEeeccccccccccccccc
Confidence 35456666553221 12999996 777655555554443 211 10012222 122333 222 223333333
Q ss_pred h---cCCeEEEEeeEEecCCC----CCCCC---cceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 172 K---EHNHFLVTGDVYRRDSI----DSTHY---PVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 172 ~---~~~~~FEiG~Vyr~d~~----d~~~~---p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
. .|+++++.|.+||+... +...+ -.|++.++.....+++ ...-+.++.+.++.+++.|+++
T Consensus 308 s~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peq--------s~~e~e~ll~~~e~i~~~LgLp 378 (502)
T PLN02320 308 LESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEE--------SESFHEELIQIEEDLFTSLGLH 378 (502)
T ss_pred CHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHH--------HHHHHHHHHHHHHHHHHHcCCC
Confidence 3 69999999999997654 11112 2344556665554332 2234678888899999999875
No 104
>PLN02837 threonine-tRNA ligase
Probab=86.95 E-value=3.2 Score=45.66 Aligned_cols=128 Identities=14% Similarity=0.096 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhccC-CCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHHHHHHHh-
Q 014218 99 GILKNAIYEYFDSNY-PNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ll~~l~- 172 (428)
..+++.|.+++.... ..||+++. +|.+...+-+...|--+.. +. +.|.. ++..+||++--|+.....+
T Consensus 247 ~~l~~~L~~~~~~~~~~~G~~~v~--tP~l~~~~l~~~sGh~~~~--~~--~mf~~~~~~~~~y~l~p~~~p~~~~~~~~ 320 (614)
T PLN02837 247 AIVRHIIEDSWKKMHFEHGYDLLY--TPHVAKADLWKTSGHLDFY--KE--NMYDQMDIEDELYQLRPMNCPYHILVYKR 320 (614)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEE--CCccCCHHHHhhcCCcccc--hh--hcccccCCCCceEEECCCCcHHHHHHHhC
Confidence 345566666554332 14999996 8887665555544421111 01 22222 3556899999998666654
Q ss_pred -------cCCeEEEEeeEEecCCCCCC----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 -------EHNHFLVTGDVYRRDSIDST----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++++|.|||....... ..-.|++.++-....+++ ..--+..+....+.++..|+.+
T Consensus 321 ~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q--------~~~e~~~~l~~~~~~~~~lg~~ 391 (614)
T PLN02837 321 KLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ--------IKDEIRGVLDLTEEILKQFGFS 391 (614)
T ss_pred ccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHH--------HHHHHHHHHHHHHHHHHHcCCC
Confidence 58999999999997653221 234567777765333221 1112455666666666666653
No 105
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=86.23 E-value=3.4 Score=43.28 Aligned_cols=89 Identities=17% Similarity=0.324 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCCeEEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLV 179 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~~~FE 179 (428)
.+.+.++++|.+. ||.|+. +|.++.... . |- .++.++ +|+-.+ ..|=.|..=+..-++..--++|+
T Consensus 139 ~i~~a~~eff~~~---gF~eV~--tP~i~~~~~--E-Gg--~elF~v---~yf~~~-a~LtqS~QLyke~~~~al~rVf~ 204 (435)
T COG0017 139 SILRAIREFFYEN---GFTEVH--TPIITASAT--E-GG--GELFKV---DYFDKE-AYLTQSPQLYKEALAAALERVFT 204 (435)
T ss_pred HHHHHHHHHHHhC---CcEEec--CceEeccCC--C-CC--ceeEEE---eecCcc-eEEecCHHHHHHHHHHHhCceEE
Confidence 3456677788877 999996 887753210 0 00 012222 333333 22222221111112224578999
Q ss_pred EeeEEecCCCC-CCCCcceEEEEE
Q 014218 180 TGDVYRRDSID-STHYPVFHQMEG 202 (428)
Q Consensus 180 iG~Vyr~d~~d-~~~~p~f~q~~g 202 (428)
+|.+||..+.+ .-|+.+|.+++.
T Consensus 205 igP~FRAE~s~T~RHL~EF~~ld~ 228 (435)
T COG0017 205 IGPTFRAEKSNTRRHLSEFWMLDP 228 (435)
T ss_pred ecCceecCCCCCcchhhhHheecc
Confidence 99999976543 347777765544
No 106
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=83.36 E-value=3.1 Score=40.95 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccc--ccccccccCCcccccchhHHHHHHHh---
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRS--YNDTYYVDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~--~~~np~~~e~~~LRtsL~~~ll~~l~--- 172 (428)
...+++++++.|... ||.++. +|++--.+.+ ....+..... +.-.....+.-.||+=+++.......
T Consensus 10 ~~~ie~~l~~~f~~~---GY~~I~--tP~~E~~d~~---~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~ 81 (272)
T PRK12294 10 LKESETAFLKYFNKA---DYELVD--FSVIEKLDWK---QLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHc---CCeEee--CCcchhHHhh---hccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC
Confidence 467889999999888 999997 7877433333 1111111111 00112345667899999988888764
Q ss_pred -cCCeEEEEeeEEecCC
Q 014218 173 -EHNHFLVTGDVYRRDS 188 (428)
Q Consensus 173 -~~~~~FEiG~Vyr~d~ 188 (428)
.+.|++-+|+|||.+.
T Consensus 82 ~~~~Rl~Y~g~VfR~~~ 98 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE 98 (272)
T ss_pred CCCceEEEeccEeccCC
Confidence 4569999999998653
No 107
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=77.45 E-value=4.1 Score=44.55 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=34.0
Q ss_pred EEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcc--eeeeEEecCCCCHHHHHHH
Q 014218 293 AFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCY--KDMSFWINESFTENNLCEV 363 (428)
Q Consensus 293 afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~--RDiSf~v~~~~~~~~i~~~ 363 (428)
.++||||||.|++.+.+.||- +--||... .|+-.=.|..++.+++.+.
T Consensus 531 g~~~G~dr~~~~~~~~~~ird-----------------------vi~fp~~~~g~d~~~~aP~~v~~~ql~~~ 580 (588)
T PRK00476 531 GIAFGLDRLVMLLAGADSIRD-----------------------VIAFPKTQSAQDLLTGAPSPVDEKQLREL 580 (588)
T ss_pred ceeccHHHHHHHHcCCccHHh-----------------------eeeccCCCCccccccCCCCcCCHHHHHhc
Confidence 468999999999999888863 22344443 4776666777877776553
No 108
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=72.68 E-value=23 Score=39.09 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc---cCCcccccchhHHHHHHHh----
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV---DSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~---~e~~~LRtsL~~~ll~~l~---- 172 (428)
.|.+-+++.+... ||+++. +|.+-....+..-+ |-..-....|.. ++.-+||+..-+++....+
T Consensus 232 ~L~~~~~~~~~~~---G~~~V~--tP~~~~~~~~~~sg----h~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 232 LLEDYVYNLVVEL---GAMPVE--TPIMYDLSHPAIRE----HADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred HHHHHHHHHHHHC---CCEEEE--CCeecChhHHhhcc----cccccchhceEecCCCceEEEecCCCHHHHHHHhCCcC
Confidence 3444444555555 999996 77663222222111 110000011211 3567899888888776664
Q ss_pred ----cCCeEEEEee-EEecCCCCCC----CCcceEEEEEEEEEe
Q 014218 173 ----EHNHFLVTGD-VYRRDSIDST----HYPVFHQMEGVSIFY 207 (428)
Q Consensus 173 ----~~~~~FEiG~-Vyr~d~~d~~----~~p~f~q~~g~~~~~ 207 (428)
.|++++|+|+ +||......+ -...|+|.++-....
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~ 346 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK 346 (613)
T ss_pred chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC
Confidence 5899999999 9997654322 235677777765543
No 109
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=71.33 E-value=13 Score=39.58 Aligned_cols=110 Identities=16% Similarity=0.269 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCcc--CchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh---cC
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIV--SVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---EH 174 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvv--s~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---~~ 174 (428)
.+-.+||++|... .||.|+. +|.+ .+.+....+-+ |.|.+.- .+..|.. +|.|.+.+- +-
T Consensus 183 ~~v~~iR~yl~n~--~GFvevE--TPtLFkrTPgGA~EFvV----Ptr~~~g-----~FYaLpQ--SPQQfKQlLMvsGi 247 (628)
T KOG2411|consen 183 NVVKKIRRYLNNR--HGFVEVE--TPTLFKRTPGGAREFVV----PTRTPRG-----KFYALPQ--SPQQFKQLLMVSGI 247 (628)
T ss_pred HHHHHHHHHHhhh--cCeeecc--CcchhccCCCccceeec----ccCCCCC-----ceeecCC--CHHHHHHHHHHhch
Confidence 4556788888765 4999997 6665 23332222222 4454211 2222332 466666553 66
Q ss_pred CeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 175 NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 175 ~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
.++|-|+++||-.......-|+|.|...-.. ..+-.++..++|.++....
T Consensus 248 drYyQiARCfRDEdlR~DRQPEFTQvD~EMs--------------F~~~~dim~liEdll~~~w 297 (628)
T KOG2411|consen 248 DRYYQIARCFRDEDLRADRQPEFTQVDMEMS--------------FTDQEDIMKLIEDLLRYVW 297 (628)
T ss_pred hhHHhHHhhhcccccCcccCCcceeeeeEEe--------------ccCHHHHHHHHHHHHHHhc
Confidence 8899999999865544456799998654332 2334677788888876554
No 110
>PLN02903 aminoacyl-tRNA ligase
Probab=71.17 E-value=8.1 Score=42.69 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=56.0
Q ss_pred EeeccCCCCCCC------------ceEEEEECCeeEEEeeeeecc-----HHHHHHc--------------------CCC
Q 014218 245 WVDTYFPFTNPS------------YELEIFFKENWLEVLGCGVTE-----QEILKRS--------------------GKL 287 (428)
Q Consensus 245 ~~~~~~p~~hPg------------~~a~I~~~g~~iGvlG~G~ih-----P~vl~~~--------------------gi~ 287 (428)
|....||||.|- +.-++++||..||-- .=.|| ..+.+.. |.+
T Consensus 512 ~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~EiggG-S~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~P 590 (652)
T PLN02903 512 LEALHHPFTAPNPEDMGDLSSARALAYDMVYNGVEIGGG-SLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAP 590 (652)
T ss_pred eEecCCCCCCCCCcchhhhhhhhhhcceeEecceeeccc-eEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 344457999993 356888999754431 12333 2222222 333
Q ss_pred CceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcce--eeeEEecCCCCHHHHHH
Q 014218 288 NNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYK--DMSFWINESFTENNLCE 362 (428)
Q Consensus 288 ~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~R--DiSf~v~~~~~~~~i~~ 362 (428)
... .+.||||||.|++.+-+.||- +--||.... |+-.=.|..++.+++.+
T Consensus 591 phg--G~alGldRlvmll~~~~~Ird-----------------------viaFPKt~~g~dlm~~aPs~v~~~qL~e 642 (652)
T PLN02903 591 PHG--GIAYGLDRLVMLLAGAKSIRD-----------------------VIAFPKTTTAQCALTRAPSEVDDKQLQD 642 (652)
T ss_pred CCC--ceeecHHHHHHHHcCCCchHh-----------------------eEecCCCCCccccccCCCCcCCHHHHHh
Confidence 332 367889999999998887763 223555444 66666677788777655
No 111
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.82 E-value=2.2 Score=43.97 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccC---chhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh---
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVS---VKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs---~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~--- 172 (428)
.-+....|++|... ||.|+. +|-+. ++..- ..-++ .| -....+|-. +|.+.+.+.
T Consensus 232 ~gvc~~FRe~L~~k---gF~EIh--TpKli~asSEGGa--------nvF~v---~Y-fk~~A~LAQ--SPQLyKQMaI~g 292 (533)
T KOG0556|consen 232 AGVCFAFREYLRSK---GFVEIH--TPKLIGASSEGGA--------NVFRV---SY-FKQKAYLAQ--SPQLYKQMAICG 292 (533)
T ss_pred HHHHHHHHHHHHhc---Ccceec--ccccccccCCCCc--------eeEEE---Ee-ccCcchhhc--ChHHHHHHHHhc
Confidence 45778889999887 999997 55432 11100 01111 11 122223322 355555444
Q ss_pred cCCeEEEEeeEEecCC
Q 014218 173 EHNHFLVTGDVYRRDS 188 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~ 188 (428)
.--+.||||.|||..+
T Consensus 293 df~rVyeIGpVfRAEd 308 (533)
T KOG0556|consen 293 DFERVYEIGPVFRAED 308 (533)
T ss_pred chhheeeecceeeccc
Confidence 4467999999999644
No 112
>PLN02603 asparaginyl-tRNA synthetase
Probab=70.27 E-value=4.3 Score=44.15 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.||||+|||.|.+.|+++||-
T Consensus 531 gGfGlG~ERLvm~ltg~~nIRd 552 (565)
T PLN02603 531 AGFGLGFERLVQFATGIDNIRD 552 (565)
T ss_pred ceeEEcHHHHHHHHhCCCchhh
Confidence 3689999999999999999973
No 113
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=68.91 E-value=4.4 Score=44.13 Aligned_cols=21 Identities=43% Similarity=0.820 Sum_probs=19.3
Q ss_pred EEEEechhHHHHhhcCCccch
Q 014218 292 WAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dir 312 (428)
-.||||+|||.|.+.|+++||
T Consensus 552 gGfGLGiERLvm~ltGl~nIR 572 (586)
T PTZ00425 552 AGFGLGFERLIMLVTGVDNIK 572 (586)
T ss_pred ceEEEcHHHHHHHHcCCCchh
Confidence 468999999999999999997
No 114
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=68.43 E-value=11 Score=41.97 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=35.1
Q ss_pred EEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcce--eeeEEecCCCCHHHHHHH
Q 014218 293 AFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYK--DMSFWINESFTENNLCEV 363 (428)
Q Consensus 293 afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~R--DiSf~v~~~~~~~~i~~~ 363 (428)
.+.+|+|||.|++.+-+.||- +--||.... |+-.=.|..++..++.+.
T Consensus 547 G~a~G~dRlvm~l~~~~sird-----------------------viaFPK~~~g~dlm~~aPs~v~~~qL~el 596 (706)
T PRK12820 547 GIALGLDRVVSMILQTPSIRE-----------------------VIAFPKNRSAACPLTGAPSEVAQEQLAEL 596 (706)
T ss_pred ceeccHHHHHHHHcCCccHHH-----------------------hcccCCCCCCCCcccCCCCcCCHHHHHHh
Confidence 467889999999999888863 334666554 666666888888887553
No 115
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=67.49 E-value=14 Score=40.30 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=32.8
Q ss_pred EEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcce--eeeEEecCCCCHHHHHH
Q 014218 293 AFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYK--DMSFWINESFTENNLCE 362 (428)
Q Consensus 293 afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~R--DiSf~v~~~~~~~~i~~ 362 (428)
.++||+|||.|++.+-+.||- +=-||.... |+-.=.|..++.+++.+
T Consensus 526 G~alG~DRlvmlLt~~~sIRD-----------------------VIaFPKt~~g~dlm~~aP~~v~~~qL~e 574 (583)
T TIGR00459 526 GFALGLDRLMMLLTGTDNIRD-----------------------VIAFPKTTAAACLMTEAPSFIDEKQLEE 574 (583)
T ss_pred ceeccHHHHHHHHcCCCchhh-----------------------eeecCCCCCCcccccCCCCcCCHHHHHH
Confidence 468899999999998877763 223555544 66655677777777654
No 116
>PLN02850 aspartate-tRNA ligase
Probab=65.15 E-value=6 Score=42.74 Aligned_cols=53 Identities=28% Similarity=0.579 Sum_probs=35.4
Q ss_pred ceEEEEECCeeEEEeee-eecc-HHHHH--------------------HcCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 257 YELEIFFKENWLEVLGC-GVTE-QEILK--------------------RSGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG~-G~ih-P~vl~--------------------~~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
.+.++++.|. +++|. -++| |+.+. ++|.+.. -.|+||+|||.|++.|+++||.
T Consensus 443 ~~fDl~i~G~--EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPh--gG~GiGlERLvM~l~g~~nIr~ 517 (530)
T PLN02850 443 NSFDVFIRGE--EIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPH--GGFGVGLERVVMLFCGLNNIRK 517 (530)
T ss_pred EEEEEEeCCE--EEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCC--ceEEEcHHHHHHHHcCCCchhe
Confidence 3678888884 55552 3444 33332 2344332 3689999999999999999973
No 117
>PRK06462 asparagine synthetase A; Reviewed
Probab=64.66 E-value=6.9 Score=39.66 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=21.5
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|.+.|.++||
T Consensus 295 ~G~pp~--~G~glGidRLvm~~~g~~~Ir 321 (335)
T PRK06462 295 EGPLPS--AGFGIGVERLTRYICGLRHIR 321 (335)
T ss_pred CCCCCC--CeEEEcHHHHHHHHcCCCchh
Confidence 454443 467999999999999999986
No 118
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=64.51 E-value=21 Score=27.21 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=24.5
Q ss_pred HHHHHHHhcccceeEEeeccCCCCCCCceEEEEECCeeEEEe
Q 014218 230 LEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVL 271 (428)
Q Consensus 230 Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvl 271 (428)
|+..|++.|+.-.++..+. | ..+-+|+|+++++.||++
T Consensus 5 lq~yLr~~f~n~~i~v~~r--p--k~~dsaEV~~g~EfiGvi 42 (63)
T PF11324_consen 5 LQAYLRRTFGNPGITVKAR--P--KKDDSAEVYIGDEFIGVI 42 (63)
T ss_pred HHHHHHHHhCCCceEEEcC--C--CCCCceEEEeCCEEEEEE
Confidence 5667777776434444321 1 456789999999855555
No 119
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=62.85 E-value=7.5 Score=39.16 Aligned_cols=52 Identities=31% Similarity=0.504 Sum_probs=32.8
Q ss_pred ceEEEEECCeeEEEeee-eecc-HHHHH------------------------HcCCCCceEEEEEechhHHHHhhcCCcc
Q 014218 257 YELEIFFKENWLEVLGC-GVTE-QEILK------------------------RSGKLNNVAWAFGLGLERLAMVLFDIPD 310 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG~-G~ih-P~vl~------------------------~~gi~~~v~~afEL~Le~L~m~~~~i~d 310 (428)
.+.+++++| ++++|+ -++| |+.++ ++|.+. .-.++||+|||.|++.|+++
T Consensus 248 ~~fdl~~~g--~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp--~~G~glG~eRLvm~l~g~~~ 323 (335)
T PF00152_consen 248 ERFDLYIPG--GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPP--HGGFGLGLERLVMLLLGLKN 323 (335)
T ss_dssp SEEEEEETT--EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--S--EEEEEEEHHHHHHHHHT-SS
T ss_pred cceeEEEeC--EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcc--cCcceehHHHHHHHHcCCCc
Confidence 578999999 456653 3333 22221 234443 34689999999999999999
Q ss_pred ch
Q 014218 311 IR 312 (428)
Q Consensus 311 ir 312 (428)
||
T Consensus 324 Ir 325 (335)
T PF00152_consen 324 IR 325 (335)
T ss_dssp GG
T ss_pred HH
Confidence 96
No 120
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=60.02 E-value=8.6 Score=41.70 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=19.5
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.|+||+|||.|++.|+++||.
T Consensus 516 gG~GiGlERLvM~~lg~~nIR~ 537 (550)
T PTZ00401 516 GGFGVGLERVVMLYLGLSNVRL 537 (550)
T ss_pred ceEEEhHHHHHHHHhCCCcHhe
Confidence 3689999999999999999963
No 121
>PLN02221 asparaginyl-tRNA synthetase
Probab=59.72 E-value=8.5 Score=41.92 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=30.0
Q ss_pred HhhcCCCCCCCCCCh--------HHHHHHHHHHHHhccCCCCcEEEccCCCccC
Q 014218 83 FTKLGMQLHKRNQHP--------IGILKNAIYEYFDSNYPNKFNKFDDLCPIVS 128 (428)
Q Consensus 83 ~~~~~r~l~~~~~hP--------l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs 128 (428)
.+.+-+.+|.....| .+.+...||++|... ||.|+. +|.++
T Consensus 151 ~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~---gFiEI~--TP~Lt 199 (572)
T PLN02221 151 LEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEH---SFLYIH--TPIIT 199 (572)
T ss_pred hHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEe--CCeec
Confidence 444557888887666 345567788888887 999997 88774
No 122
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=59.47 E-value=8.9 Score=40.52 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=22.0
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+|.+.. -.|+||+|||.|.+.|+++||-
T Consensus 410 ~G~pP~--gG~GiGidRL~m~l~g~~nIrd 437 (450)
T PRK03932 410 YGSVPH--SGFGLGFERLVAYITGLDNIRD 437 (450)
T ss_pred cCCCCC--CcEeehHHHHHHHHhCCCcHhh
Confidence 444432 4689999999999999999963
No 123
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=58.76 E-value=8.1 Score=38.60 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.3
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.++||+|||.|++.|+++||-
T Consensus 279 ~G~GiGieRL~m~l~g~~~Ir~ 300 (304)
T TIGR00462 279 SGVALGVDRLLMLALGADSIDD 300 (304)
T ss_pred CceEEcHHHHHHHHhCCCchhh
Confidence 3579999999999999999973
No 124
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.39 E-value=21 Score=38.54 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=31.8
Q ss_pred EEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEE--ecCCCCHHHHHHH
Q 014218 294 FGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFW--INESFTENNLCEV 363 (428)
Q Consensus 294 fEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~--v~~~~~~~~i~~~ 363 (428)
..+|||||.|++-+-..|| .+--||...+=..+. .|..++..++.++
T Consensus 530 iA~GlDRlvmll~g~~sIR-----------------------eVIAFPKt~~a~dllt~APs~v~~~qL~El 578 (585)
T COG0173 530 IAFGLDRLVMLLTGAESIR-----------------------DVIAFPKTQQAADLLTNAPSEVDEKQLKEL 578 (585)
T ss_pred eeccHHHHHHHHcCCCchh-----------------------heeecCCCccccccccCCCCcCCHHHHHhc
Confidence 4567899999988877665 344577777643444 4777887777654
No 125
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=57.62 E-value=10 Score=38.12 Aligned_cols=21 Identities=57% Similarity=0.918 Sum_probs=19.0
Q ss_pred EEEEechhHHHHhhcCCccch
Q 014218 292 WAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dir 312 (428)
-.|+||+|||.|++.|+++||
T Consensus 292 ~G~giGidRL~m~~~g~~~Ir 312 (322)
T cd00776 292 GGFGLGLERLVMWLLGLDNIR 312 (322)
T ss_pred ceeeEhHHHHHHHHcCCCchh
Confidence 468999999999999999986
No 126
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.21 E-value=95 Score=32.69 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHhccC-CCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccC--CcccccchhHHHHHHHh
Q 014218 96 HPIGILKNAIYEYFDSNY-PNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDS--QTVLRCHTSAHQAELLK 172 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e--~~~LRtsL~~~ll~~l~ 172 (428)
.+...|.+.+.++|.... ..||+|+. .|.+...+.....|.-+.. ..+-|++++ +.+..|.=.| +.+..+
T Consensus 171 ~~~a~L~rAL~~f~ld~~~~~Gf~e~~--~P~lv~~e~m~gtgqlpkf----~e~~y~v~~~~~~LipTaEvp-l~~l~~ 243 (429)
T COG0172 171 GKGARLERALIQFMLDLHTKHGFTEVL--PPYLVNLESMFGTGQLPKF----EEDLYKVEDPDLYLIPTAEVP-LTNLHR 243 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCceEee--CceeecHHHhhccCCCCCC----cccceEecCCCEEEEecchhh-hHHhhc
Confidence 466778888888875432 24999985 8887766666665543322 114455543 3444554444 233332
Q ss_pred --------cCCeEEEEeeEEecCCCC----CCCC---cceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 173 --------EHNHFLVTGDVYRRDSID----STHY---PVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 173 --------~~~~~FEiG~Vyr~d~~d----~~~~---p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
.|++++-...+||+.... ...+ -.|+..+.+.+..+++ .......+.+..|.++..|
T Consensus 244 ~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~--------S~~~~E~m~~~ae~il~~L 315 (429)
T COG0172 244 DEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEE--------SEEELEEMLGNAEEVLQEL 315 (429)
T ss_pred ccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcch--------hHHHHHHHHHHHHHHHHHh
Confidence 589999999999986532 1122 1345566666654433 2334688999999999999
Q ss_pred cccceeEEee---c--cCCCCCCCceEEEEECC--ee--EEEee-eeeccHHHHH
Q 014218 238 FGAVEMRWVD---T--YFPFTNPSYELEIFFKE--NW--LEVLG-CGVTEQEILK 282 (428)
Q Consensus 238 ~~~~~~~~~~---~--~~p~~hPg~~a~I~~~g--~~--iGvlG-~G~ihP~vl~ 282 (428)
.++ ++.+. . .|+. .+...+++|+-+ +. +..+- |+-.|..-+.
T Consensus 316 eLP--yRvv~lctGDlgf~a-~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~ 367 (429)
T COG0172 316 ELP--YRVVNLCTGDLGFSA-AKKYDLEVWLPGQNKYREISSCSNCTDFQARRLN 367 (429)
T ss_pred CCC--ceEeeeccCCcCCcc-cCceeEEEEecCCCCceeeeeeeccccHHHHHHh
Confidence 875 44322 1 1222 344567777643 22 22222 5777764443
No 127
>PRK09350 poxB regulator PoxA; Provisional
Probab=52.76 E-value=12 Score=37.45 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|++.|++.||
T Consensus 278 ~G~pp~--~G~giGidRL~m~~~g~~~Ir 304 (306)
T PRK09350 278 AGLPDC--SGVALGVDRLIMLALGAESIS 304 (306)
T ss_pred cCCCCC--CceEecHHHHHHHHcCCCCcc
Confidence 344443 357999999999999999886
No 128
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=51.99 E-value=12 Score=37.73 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=21.8
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|++.|+++||
T Consensus 293 ~G~pp~--~G~glGleRL~m~~~g~~~Ir 319 (329)
T cd00775 293 YGMPPT--GGLGIGIDRLVMLLTDSNSIR 319 (329)
T ss_pred CCCCCC--CcEEecHHHHHHHHcCCCcHH
Confidence 455543 357999999999999999986
No 129
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=49.87 E-value=15 Score=36.26 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=21.5
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|.+.|.+.||
T Consensus 244 ~G~pP~--~G~giGidRL~m~~~g~~~Ir 270 (280)
T cd00777 244 YGAPPH--GGIALGLDRLVMLLTGSESIR 270 (280)
T ss_pred CCCCCC--CeEeEhHHHHHHHHcCCCchh
Confidence 566543 357999999999999998885
No 130
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=49.83 E-value=28 Score=26.69 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=27.5
Q ss_pred EEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 014218 380 NFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQ 418 (428)
Q Consensus 380 ~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~ 418 (428)
.|....|| .++|+..++.-.||.+||+.+++.|++.
T Consensus 6 ~F~~~~gk---~~ti~i~~pk~~lt~~~V~~~m~~ii~~ 41 (69)
T PF11148_consen 6 VFKTEDGK---TFTISIPNPKEDLTEAEVKAAMQAIIAK 41 (69)
T ss_pred EEEcCCCC---EEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 34444443 3566777899999999999999999875
No 131
>PLN02532 asparagine-tRNA synthetase
Probab=49.76 E-value=14 Score=40.61 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=19.7
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.|+||+|||.|.+.|+++||-
T Consensus 599 gGfGLG~ERLvm~ltGl~nIRD 620 (633)
T PLN02532 599 SGFSLGFELMVLFATGLPDVRD 620 (633)
T ss_pred eEEEEhHHHHHHHHhCCCchhe
Confidence 4689999999999999999973
No 132
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=49.03 E-value=64 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcccceeEEeeccCCCCC-CCceEEEEECCeeEEEeeee
Q 014218 227 KRCLEGLARHLFGAVEMRWVDTYFPFTN-PSYELEIFFKENWLEVLGCG 274 (428)
Q Consensus 227 Kg~Le~Ll~~L~~~~~~~~~~~~~p~~h-Pg~~a~I~~~g~~iGvlG~G 274 (428)
|..|..++...+....+.+....-|-.+ |-+.+.+.++|..+| .|.|
T Consensus 2 ~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~-~g~g 49 (67)
T PF00035_consen 2 KSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYG-EGEG 49 (67)
T ss_dssp HHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEE-EEEE
T ss_pred HHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEe-Eecc
Confidence 4567777777765555555444444444 678899999998665 3444
No 133
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=48.78 E-value=17 Score=38.32 Aligned_cols=51 Identities=31% Similarity=0.578 Sum_probs=34.9
Q ss_pred eEEEEECCeeEEEeee-eecc-HHHH------------------H--HcCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 258 ELEIFFKENWLEVLGC-GVTE-QEIL------------------K--RSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 258 ~a~I~~~g~~iGvlG~-G~ih-P~vl------------------~--~~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+.+++++|. +++|. -++| |+.+ + ++|++.. -.|+||+|||.|++.|.++||
T Consensus 351 ~fdl~~~g~--Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~--~G~giGidRl~m~~~g~~~Ir 423 (437)
T PRK05159 351 SFDLLFRGL--EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPH--GGFGLGLERLTMKLLGLENIR 423 (437)
T ss_pred EEEEEECCE--EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC--CeeeEhHHHHHHHHcCCCchh
Confidence 678888885 66652 3443 3222 1 3555543 468999999999999999986
No 134
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=48.18 E-value=14 Score=38.72 Aligned_cols=51 Identities=25% Similarity=0.519 Sum_probs=34.2
Q ss_pred eEEEEECCeeEEEeee-eeccH-HHH----H----------------HcCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 258 ELEIFFKENWLEVLGC-GVTEQ-EIL----K----------------RSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 258 ~a~I~~~g~~iGvlG~-G~ihP-~vl----~----------------~~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+.+++++|. |++|. -++|- +.+ + ++|.+.. -.|+||+|||.|.+.|.++||
T Consensus 342 ~fdl~~~g~--Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~--~G~GiGidRL~m~l~g~~~Ir 414 (428)
T TIGR00458 342 SFDLMYRDL--EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPH--AGWGLGAERFVMFLLGLKNIR 414 (428)
T ss_pred EEEEEeCCe--EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCc--CceeecHHHHHHHHcCCCchh
Confidence 678889884 66653 34442 111 1 2444432 468999999999999999986
No 135
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=47.91 E-value=16 Score=39.35 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=21.4
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|++.|.+.||
T Consensus 467 yG~PP~--gG~GiGiDRLvMlltg~~sIr 493 (505)
T PRK12445 467 YGLPPT--AGLGIGIDRMIMLFTNSHTIR 493 (505)
T ss_pred cCCCCC--CeEEEhHHHHHHHHcCCCchh
Confidence 444433 368999999999999999886
No 136
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=47.02 E-value=15 Score=38.90 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=19.1
Q ss_pred EEEEechhHHHHhhcCCccch
Q 014218 292 WAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dir 312 (428)
-.||||+|||.|.+.|+++||
T Consensus 419 gG~GiGieRlvm~l~g~~~Ir 439 (453)
T TIGR00457 419 SGFGLGFERLLAYITGLENIR 439 (453)
T ss_pred CcEeehHHHHHHHHhCCCcHh
Confidence 368999999999999999997
No 137
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=45.65 E-value=29 Score=30.51 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=27.0
Q ss_pred CCCCCCCceEEEEECCeeEEEeee-eeccHHHHHHcC
Q 014218 250 FPFTNPSYELEIFFKENWLEVLGC-GVTEQEILKRSG 285 (428)
Q Consensus 250 ~p~~hPg~~a~I~~~g~~iGvlG~-G~ihP~vl~~~g 285 (428)
++-..||...-|.++|+.+|++|. | .|+-.+.++
T Consensus 66 ~~g~k~GinlPI~~~g~~iGviGItG--~p~eV~~~~ 100 (135)
T PF05651_consen 66 YPGVKPGINLPIIFNGEVIGVIGITG--EPEEVRPYA 100 (135)
T ss_pred ccCCCcceeeeEEECCEEEEEEEEec--CHHHHHHHH
Confidence 467899999999999999999984 7 455555543
No 138
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=44.93 E-value=18 Score=37.96 Aligned_cols=20 Identities=55% Similarity=1.036 Sum_probs=18.6
Q ss_pred EEEechhHHHHhhcCCccch
Q 014218 293 AFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 293 afEL~Le~L~m~~~~i~dir 312 (428)
.||||+|||.|.+.|+.+||
T Consensus 402 GfGlG~ERlv~~i~gl~nIR 421 (435)
T COG0017 402 GFGLGLERLVMYILGLDNIR 421 (435)
T ss_pred ccccCHHHHHHHHhCCCcce
Confidence 58999999999999999986
No 139
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.81 E-value=99 Score=32.58 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccccc----CCcccccchhHHHHHHHh---
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVD----SQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~----e~~~LRtsL~~~ll~~l~--- 172 (428)
.+-+.|.+.|... |..+++ +|+...++-+-.= .-+|. . .-|-.. +.--||--|++.....+.
T Consensus 79 ~if~~i~~vFkrh---Ga~~iD--TPVFElkeiL~gK-YGEds--k---LiYdlkDQGGEl~SLRYDLTVPfARylAmNk 147 (518)
T KOG1936|consen 79 KIFSTIKEVFKRH---GAETID--TPVFELKEILTGK-YGEDS--K---LIYDLKDQGGELCSLRYDLTVPFARYLAMNK 147 (518)
T ss_pred HHHHHHHHHHHHc---CCeecc--ccchhHHHHHhhh-ccccc--c---eeEehhhcCCcEEEeecccccHHHHHHHHcc
Confidence 3445555555555 999987 7887544432210 01111 1 123333 445789888887777665
Q ss_pred -cCCeEEEEeeEEecCCC--CCCCCcceEEE
Q 014218 173 -EHNHFLVTGDVYRRDSI--DSTHYPVFHQM 200 (428)
Q Consensus 173 -~~~~~FEiG~Vyr~d~~--d~~~~p~f~q~ 200 (428)
..++-+-||+|||+|.. ....|.+|.|.
T Consensus 148 i~sikRy~iAkVyRRd~P~mtrGR~REFYQc 178 (518)
T KOG1936|consen 148 ITSIKRYHIAKVYRRDQPAMTRGRYREFYQC 178 (518)
T ss_pred cccceeeeEEEEEeccCchhhchhhhhhhcc
Confidence 57889999999999875 22345555553
No 140
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=44.49 E-value=19 Score=38.51 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=21.4
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|++.|.+.||
T Consensus 453 ~G~PP~--gG~GiGiDRLvm~ltg~~~Ir 479 (491)
T PRK00484 453 YGMPPT--GGLGIGIDRLVMLLTDSPSIR 479 (491)
T ss_pred CCCCCC--CeEEEeHHHHHHHHhCCCcHH
Confidence 455433 368999999999999999886
No 141
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=43.77 E-value=20 Score=38.51 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=18.7
Q ss_pred EEEEechhHHHHhhcCCccch
Q 014218 292 WAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dir 312 (428)
-.|+||+|||.|++.|.+.||
T Consensus 464 gG~GiGiDRLvMlltg~~~Ir 484 (496)
T TIGR00499 464 GGLGIGIDRLVMLLTDSKSIR 484 (496)
T ss_pred ceEEEhHHHHHHHHhCCCcHh
Confidence 368999999999999998886
No 142
>PRK04081 hypothetical protein; Provisional
Probab=43.66 E-value=47 Score=31.09 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=30.1
Q ss_pred EEEEEEEEcCCCCCeeEEEEEEEec---CCCCCCHHHHHHHHHHHHHHH
Q 014218 374 EVRLIDNFTNKKGMTSHCYRIAYRS---MERSLTDEDINELQWNVREQV 419 (428)
Q Consensus 374 ~V~l~D~y~g~~gkkSl~~ri~yrs---~drTLt~eEV~~~~~~i~~~l 419 (428)
+.+++|+| |..+ =|++.|+ .||+|+.||++++++.=..++
T Consensus 60 ~YKI~eE~--Ps~~----Trvilr~~dG~ER~LS~eE~dkLi~eE~~KI 102 (207)
T PRK04081 60 SYKILEEY--PSSE----TRVVLRDLDGTERVLSQEEIDKLIKEEEAKI 102 (207)
T ss_pred ceEeeeec--CCCc----ceEEEecCCCcccccCHHHHHHHHHHHHHhh
Confidence 47899999 4432 3677777 899999999999988655444
No 143
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.48 E-value=4.5e+02 Score=28.33 Aligned_cols=83 Identities=13% Similarity=0.090 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchh---hhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh--
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQ---NFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~---nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-- 172 (428)
+.++.+.||+.|... |-.|+. .|++...+ -.+...--.+...+++... ++.-+||++---...+.++
T Consensus 50 ~~kI~~iir~em~~~---G~~Evl--~P~L~p~eLwkEs~r~~~f~~El~~v~drg---~~~l~L~PTsEe~it~~~~~~ 121 (500)
T COG0442 50 LEKIENIIREEMDKI---GAQEVL--FPTLIPAELWKESGRWEGFGPELFRVKDRG---DRPLALRPTSEEVITDMFRKW 121 (500)
T ss_pred HHHHHHHHHHHHHhc---CceEEe--chhcCHHHHHHHhChhhhcchhhEEEEccC---CceeeeCCCcHHHHHHHHHHH
Confidence 467888999999988 999984 78775432 1111110011223332222 6667888764444444443
Q ss_pred ------cCCeEEEEeeEEecCCC
Q 014218 173 ------EHNHFLVTGDVYRRDSI 189 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~ 189 (428)
.|++++-|..||| |+.
T Consensus 122 i~SYkdLPl~lYQi~~kfR-dE~ 143 (500)
T COG0442 122 IRSYKDLPLKLYQIQSKFR-DEK 143 (500)
T ss_pred hhhhhhCCcceeeeeeEEe-ccc
Confidence 6899999999997 443
No 144
>PLN02502 lysyl-tRNA synthetase
Probab=43.07 E-value=21 Score=38.84 Aligned_cols=28 Identities=39% Similarity=0.622 Sum_probs=22.3
Q ss_pred HcCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 283 RSGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 283 ~~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
++|++.. -.++||+|||.|++.|.+.||
T Consensus 514 eyGmPP~--gG~GiGiDRLvMlltg~~sIr 541 (553)
T PLN02502 514 EYGLPPT--GGWGLGIDRLVMLLTDSASIR 541 (553)
T ss_pred HcCCCCC--ceEEehHHHHHHHHcCCcchh
Confidence 4566543 357999999999999998886
No 145
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=37.64 E-value=28 Score=38.06 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=21.1
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
+|++.. -.++||+|||.|++.|.+.||
T Consensus 547 yGmPPt--gG~GiGIDRLvMlltg~~sIr 573 (585)
T PTZ00417 547 YGLPPT--GGLGLGIDRITMFLTNKNCIK 573 (585)
T ss_pred cCCCCC--ceEEEcHHHHHHHHcCCcchh
Confidence 344432 468999999999999988886
No 146
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=36.72 E-value=61 Score=34.67 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=17.0
Q ss_pred EEEechhHHHHhhcCCccchh
Q 014218 293 AFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 293 afEL~Le~L~m~~~~i~dirl 313 (428)
.+-|||||+.+++.+-|.||-
T Consensus 570 GiAlGlDRlvaml~~a~sIRD 590 (628)
T KOG2411|consen 570 GIALGLDRLVAMLTGAPSIRD 590 (628)
T ss_pred ceeecHHHHHHHHcCCCchhe
Confidence 356889999999998888763
No 147
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.27 E-value=21 Score=37.10 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEechhHHHHhhcCCccchh
Q 014218 293 AFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 293 afEL~Le~L~m~~~~i~dirl 313 (428)
.+||||||+.|+.+++++||.
T Consensus 500 GgGIGLERvvmlyl~L~nIR~ 520 (533)
T KOG0556|consen 500 GGGIGLERVVMLYLGLNNIRK 520 (533)
T ss_pred CCcccHHHHHHHHhcCCcchh
Confidence 589999999999999999986
No 148
>PRK07080 hypothetical protein; Validated
Probab=36.06 E-value=3.5e+02 Score=27.39 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=52.6
Q ss_pred CCcccccchhHHHHHHHh------cCCeEE-EEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHH
Q 014218 155 SQTVLRCHTSAHQAELLK------EHNHFL-VTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDL 226 (428)
Q Consensus 155 e~~~LRtsL~~~ll~~l~------~~~~~F-EiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dL 226 (428)
...+|.+..=.+....+. .+-++| ..|.+||.... +...+-.|++.+.+++.+++.- ..--...
T Consensus 126 ~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~v--------~~~r~~w 197 (317)
T PRK07080 126 TDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQI--------VAFRQSW 197 (317)
T ss_pred CcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHHH--------HHHHHHH
Confidence 344555544444444433 123455 56999997543 3444567999999988754331 1011234
Q ss_pred HHHHHHHHHHhcccceeEEeeccCCCCCCC
Q 014218 227 KRCLEGLARHLFGAVEMRWVDTYFPFTNPS 256 (428)
Q Consensus 227 Kg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg 256 (428)
+.....+++.|+. +++...+..|||--+
T Consensus 198 ~e~~~~l~~~LgL--~~~ve~AnDPFF~~~ 225 (317)
T PRK07080 198 IERGTAMADALGL--PVEIDLANDPFFGRG 225 (317)
T ss_pred HHHHHHHHHHhCC--ceeEeecCCcccccc
Confidence 4555567777775 455556778887655
No 149
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=35.98 E-value=29 Score=38.45 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=21.8
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+|++.. -.++||+|||.|++.|.+.||.
T Consensus 528 yGmPPt--gG~GIGIDRLvMlltg~~sIRe 555 (659)
T PTZ00385 528 VGLPPT--AGWGMGIDRALMLLTNSSNIRD 555 (659)
T ss_pred cCCCCC--CceEEcHHHHHHHHcCCcchhh
Confidence 445433 3579999999999999999873
No 150
>PRK10515 hypothetical protein; Provisional
Probab=34.93 E-value=43 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=20.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHH
Q 014218 398 SMERSLTDEDINELQWNVREQVQS 421 (428)
Q Consensus 398 s~drTLt~eEV~~~~~~i~~~l~~ 421 (428)
+..|.||+.|-|.+-+.++..|..
T Consensus 29 ~~gR~LTNaE~NkvK~e~i~ki~a 52 (90)
T PRK10515 29 AHGRPLTNSETNSIKKEYIDKLMA 52 (90)
T ss_pred HcCCccchhhHhHHHHHHHHHHHH
Confidence 468999999999999999888754
No 151
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=33 Score=35.53 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCC----cccccchhHHHHHHHhcCCe
Q 014218 101 LKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQ----TVLRCHTSAHQAELLKEHNH 176 (428)
Q Consensus 101 l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~----~~LRtsL~~~ll~~l~~~~~ 176 (428)
+......+|... +|+.+. +|++|+.++ + |. ...-++....+++.++ ..|=-|..-|+-.....-.+
T Consensus 138 ~~~a~h~ffq~~---~F~~i~--tPiiTt~DC-E--Ga--GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~Lsr 207 (446)
T KOG0554|consen 138 LAFATHSFFQSH---DFTYIN--TPIITTNDC-E--GA--GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSR 207 (446)
T ss_pred HHHHHHHHHHHc---CceEec--CcEeeccCC-C--CC--cceEEEEecCcccccccCCceEEEEeceehHHHHHhhhcc
Confidence 344566777776 999996 899986531 1 11 1122333334555443 34433333333222225577
Q ss_pred EEEEeeEEecCCCC-CCCCcceEEEEE
Q 014218 177 FLVTGDVYRRDSID-STHYPVFHQMEG 202 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d-~~~~p~f~q~~g 202 (428)
.+-.|..||.+..+ +-|+.+|..++.
T Consensus 208 vyTfgP~FRAEnS~tsRHLAEFwMlEa 234 (446)
T KOG0554|consen 208 VYTFGPTFRAENSHTSRHLAEFWMLEA 234 (446)
T ss_pred eEeeccceecccCCchhHHhhhhhhhh
Confidence 88899999987764 347777765544
No 152
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=33.99 E-value=72 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=27.8
Q ss_pred eeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q 014218 388 TSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVL 427 (428)
Q Consensus 388 kSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~L 427 (428)
..++||+ ++.++.+|-++|.+....+...|+++.|+++
T Consensus 45 ~avTFrv--~~N~~n~taadVa~~a~~~K~~Le~~tG~~I 82 (91)
T PF11548_consen 45 PAVTFRV--RPNNKNLTAADVAKQAVDNKNQLEKETGLKI 82 (91)
T ss_dssp TEEEEEE-----TT---HHHHHHHHHHTHHHHHHHHSS-E
T ss_pred ceEEEEe--ccCcCCCCHHHHHHHHHHhHHHHHHhhCcEE
Confidence 3688887 5778999999999999999999999999875
No 153
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=33.64 E-value=1.9e+02 Score=28.47 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=44.1
Q ss_pred HHHhccc---ceeEEeeccCCCCCCC-----ceEEEEECCeeEEEeeeeeccHHHHHHcCCC-CceEEEEEechhHHHHh
Q 014218 234 ARHLFGA---VEMRWVDTYFPFTNPS-----YELEIFFKENWLEVLGCGVTEQEILKRSGKL-NNVAWAFGLGLERLAMV 304 (428)
Q Consensus 234 l~~L~~~---~~~~~~~~~~p~~hPg-----~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~-~~v~~afEL~Le~L~m~ 304 (428)
++.||++ -++|+++.. |-.|. -.-||++||-.|--+-. ..+ --|++ .||..-.-.|||||+|.
T Consensus 96 L~~lGid~~~hDIRFVEDn--WEsPTLGAwGlGWEVWldGMEITQFTY--FQQ----vGGi~~~pv~~EITYGLERiaMy 167 (293)
T TIGR00388 96 LRALGIDPTEHDIRFVEDN--WENPTLGAWGLGWEVWLDGMEVTQFTY--FQQ----VGGLECKPVSVEITYGLERLAMY 167 (293)
T ss_pred HHHhCCCccccCeeEeecC--CCCCcccccccccEEEECCeeeeeeee--eee----eCCeeccccceeeehhHHHHHHH
Confidence 3566764 246777653 44443 34589999975533310 000 00121 12322234589999999
Q ss_pred hcCCccch-hccccc
Q 014218 305 LFDIPDIR-LFWSSD 318 (428)
Q Consensus 305 ~~~i~dir-l~ws~d 318 (428)
+-+++.+- |.|+.+
T Consensus 168 lQ~vd~v~dl~w~~~ 182 (293)
T TIGR00388 168 IQGVENVYDLEWSDG 182 (293)
T ss_pred HhCCCeeeeeeecCC
Confidence 99998886 778763
No 154
>PF11656 DUF3811: YjbD family (DUF3811); InterPro: IPR020317 This entry contains proteins with no known function.
Probab=33.59 E-value=44 Score=26.96 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHH
Q 014218 398 SMERSLTDEDINELQWNVREQVQS 421 (428)
Q Consensus 398 s~drTLt~eEV~~~~~~i~~~l~~ 421 (428)
+.+|.||+.|-|.+-+.++..|..
T Consensus 27 ~~gR~LTNaE~NkiKde~i~ki~~ 50 (87)
T PF11656_consen 27 NLGRELTNAEQNKIKDEIIDKIMA 50 (87)
T ss_pred HcCCccchhhhhHHHHHHHHHHHH
Confidence 468999999999999999888754
No 155
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.05 E-value=1.2e+02 Score=33.27 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=53.0
Q ss_pred ChHH-HHHHHHHHHHhccC-CCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccccc---CCcccccchhHHHHHH
Q 014218 96 HPIG-ILKNAIYEYFDSNY-PNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVD---SQTVLRCHTSAHQAEL 170 (428)
Q Consensus 96 hPl~-~l~~~I~~~l~~~~-~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~---e~~~LRtsL~~~ll~~ 170 (428)
||.+ .+++.+.+++.... ..||+++. +|++...+.+..-| |-..-+-+.+... +.-+||+.--||....
T Consensus 216 ~pkG~~ir~~le~y~~~~~~~~Gy~~V~--TP~~~~~~l~~~SG----H~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~i 289 (589)
T COG0441 216 HPKGATIRNLLEDYVRTKLRSYGYQEVK--TPVLADLELWELSG----HWDNYKEDMFLTESDDREYALKPMNCPGHILI 289 (589)
T ss_pred CCCcccHHHHHHHHHHHHHHhcCceEec--CCeeeecccchhcc----chhhccccceeeccCChhheeeeccCHhHHHH
Confidence 4444 56666666664321 23999996 88775433222222 2110000122222 4568999999998888
Q ss_pred Hh--------cCCeEEEEeeEEecCCC
Q 014218 171 LK--------EHNHFLVTGDVYRRDSI 189 (428)
Q Consensus 171 l~--------~~~~~FEiG~Vyr~d~~ 189 (428)
++ .+++++|.|.|||....
T Consensus 290 fk~~~~SYR~LP~r~~E~g~v~R~E~S 316 (589)
T COG0441 290 FKSGLRSYRELPLRLAEFGYVYRYEKS 316 (589)
T ss_pred HhcCCcceeccchhhhhcceeecccCc
Confidence 86 47899999999997554
No 156
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=30.75 E-value=1.3e+02 Score=32.41 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=68.3
Q ss_pred cccccCCcccccchhHHHHHHHh---------cCCeEEEEeeEEecCCCCC-C---CCcceEEEEEEEEEecCCcccc--
Q 014218 150 TYYVDSQTVLRCHTSAHQAELLK---------EHNHFLVTGDVYRRDSIDS-T---HYPVFHQMEGVSIFYPDEWGAA-- 214 (428)
Q Consensus 150 np~~~e~~~LRtsL~~~ll~~l~---------~~~~~FEiG~Vyr~d~~d~-~---~~p~f~q~~g~~~~~~~~w~~~-- 214 (428)
.|+......||+=|.-|+--.++ .|..+.-||+.||.. +.+ + .+..|.||+.-....+.+=...
T Consensus 154 Gp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNE-ISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f 232 (558)
T COG0423 154 GPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNE-ISPRNGLFRTREFEQAEIEFFVDPEEKEHPKF 232 (558)
T ss_pred cCCCCcceeecccccchhhhhhHHHHHHhccCCCeEEEeechhhccc-cCcccceeehhhhhhhheeeEECCCcccCcch
Confidence 46666778999999877654443 588899999999853 322 2 2456777766544433330000
Q ss_pred -------------C--cc-----cc---ccc---HHHHHHHHHHHHHHhcccc-eeEEeec---c-CCCCCCCceEEEEE
Q 014218 215 -------------G--LD-----AT---EYA---AKDLKRCLEGLARHLFGAV-EMRWVDT---Y-FPFTNPSYELEIFF 263 (428)
Q Consensus 215 -------------~--~~-----~~---~~~---f~dLKg~Le~Ll~~L~~~~-~~~~~~~---~-~p~~hPg~~a~I~~ 263 (428)
. .+ +. .+. ....-+....++..+|++. .+++..- + ..|-.-.|-+++..
T Consensus 233 ~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~ 312 (558)
T COG0423 233 NEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKF 312 (558)
T ss_pred hhhhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEec
Confidence 0 00 00 011 2233445555666777642 2343221 0 01333446788888
Q ss_pred C-CeeEEEeee
Q 014218 264 K-ENWLEVLGC 273 (428)
Q Consensus 264 ~-g~~iGvlG~ 273 (428)
. |.|+++.||
T Consensus 313 ~~~gWiE~~Gi 323 (558)
T COG0423 313 PFGGWIELVGI 323 (558)
T ss_pred CCCceEEEEEe
Confidence 7 779999975
No 157
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.19 E-value=1.2e+02 Score=29.68 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=43.1
Q ss_pred eeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCC--CCcceeeeEEe
Q 014218 274 GVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKY--PPCYKDMSFWI 351 (428)
Q Consensus 274 G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~Sky--P~~~RDiSf~v 351 (428)
|..+|.+.+.+++..|. | +-=++. |. |+.+.. -|+|+| |.++-+|+|++
T Consensus 63 glts~a~q~~~~v~epd-~--G~lfd~--m~--------------------f~eg~~----ip~~r~~~prvE~EiafvL 113 (264)
T COG3971 63 GLTSPAMQQQLGVDEPD-Y--GTLFDD--MA--------------------FNEGAD----IPFSRFIQPRVEVEIAFVL 113 (264)
T ss_pred ccCCHHHHHHcCCCCcc-h--hhhhHh--HH--------------------hhcCCC----CCcccccceeeeeeEEEEe
Confidence 78899999999999985 4 222332 21 233322 344444 68888999999
Q ss_pred cCCC-----CHHHHHHHHHhh
Q 014218 352 NESF-----TENNLCEVVRGV 367 (428)
Q Consensus 352 ~~~~-----~~~~i~~~Ir~~ 367 (428)
.++. +..|+++.+..+
T Consensus 114 ~kdlpa~~~T~~d~l~a~~~v 134 (264)
T COG3971 114 KKDLPAPDCTVADVLNATDYV 134 (264)
T ss_pred cCCCCCCCCCHHHHHHHHHhh
Confidence 8864 467777766654
No 158
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=28.74 E-value=76 Score=32.98 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccc---ccccccccCCcccccchhHHHHHHHh-
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRS---YNDTYYVDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~---~~~np~~~e~~~LRtsL~~~ll~~l~- 172 (428)
-...+++.+.+.|... ||..++ +|++--.+-|-.+ ..+-.+. +..+...+. -+||+=+++.......
T Consensus 19 ~~~~i~~~l~~~f~~~---Gy~~v~--tP~lE~~d~~l~~---~g~~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~ 89 (390)
T COG3705 19 RKEEIRDQLLALFRAW---GYERVE--TPTLEPADPLLDG---AGEDLRRRLFKLEDETGGR-LGLRPDFTIPVARIHAT 89 (390)
T ss_pred hHHHHHHHHHHHHHHh---CCcccc--ccccchhhhhhhc---cchhhhhhheEEecCCCCe-EEecccccHHHHHHHHH
Confidence 3456778888888877 999886 7777533323222 1121122 002333444 7999988776655443
Q ss_pred ----cCCeEEEEeeEEecC
Q 014218 173 ----EHNHFLVTGDVYRRD 187 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d 187 (428)
.+.|+--.|+|||..
T Consensus 90 ~~~~~P~Rl~Y~G~Vfr~~ 108 (390)
T COG3705 90 LLAGTPLRLSYAGKVFRAR 108 (390)
T ss_pred hcCCCCceeeecchhhhcc
Confidence 589999999999976
No 159
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=27.43 E-value=1.9e+02 Score=28.31 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=40.8
Q ss_pred HHHhccc---ceeEEeeccCCCCCCC-----ceEEEEECCeeEEEeeeeeccHHHHHHcCCC-CceEEEEEechhHHHHh
Q 014218 234 ARHLFGA---VEMRWVDTYFPFTNPS-----YELEIFFKENWLEVLGCGVTEQEILKRSGKL-NNVAWAFGLGLERLAMV 304 (428)
Q Consensus 234 l~~L~~~---~~~~~~~~~~p~~hPg-----~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~-~~v~~afEL~Le~L~m~ 304 (428)
++.||++ -++|+++.. |-.|. -.-||+++|-.|--+-. ..+ --|++ .||..-.-.|||||+|.
T Consensus 95 L~~lGid~~~hDIRFVEDn--WEsPTLGAwGLGWEVWldGMEITQFTY--FQQ----vGGi~~~pv~~EiTYGLERiamy 166 (279)
T cd00733 95 LEALGINPKEHDIRFVEDN--WESPTLGAWGLGWEVWLDGMEVTQFTY--FQQ----VGGIPCKPISVEITYGLERIAMY 166 (279)
T ss_pred HHHhCCCccccCeeEeecC--CCCCcccccccccEEEECCeeeeeeee--eee----eCCeeccccceeeehhHHHHHHH
Confidence 3566664 246777653 44443 34589999965533310 000 00121 12222234589999999
Q ss_pred hcCCccc-hhcccc
Q 014218 305 LFDIPDI-RLFWSS 317 (428)
Q Consensus 305 ~~~i~di-rl~ws~ 317 (428)
+-+++++ .|-|+.
T Consensus 167 lQ~vd~v~dl~w~~ 180 (279)
T cd00733 167 LQGVDNVYDIEWNK 180 (279)
T ss_pred HhCCCceeccccCC
Confidence 9888775 234544
No 160
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=27.06 E-value=2.2e+02 Score=20.39 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECCeeEE
Q 014218 228 RCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLE 269 (428)
Q Consensus 228 g~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g~~iG 269 (428)
..|..++...+....|......-|-..|.+.+.+.++|+.++
T Consensus 3 ~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~ 44 (67)
T smart00358 3 SLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTG 44 (67)
T ss_pred hHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEE
Confidence 445566665544334544332224344678999999987554
No 161
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=26.98 E-value=2e+02 Score=28.20 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=38.6
Q ss_pred HHHhccc---ceeEEeeccCCCCCCC-----ceEEEEECCeeEEEeeeeeccHHHHHHcCCC-CceEEEEEechhHHHHh
Q 014218 234 ARHLFGA---VEMRWVDTYFPFTNPS-----YELEIFFKENWLEVLGCGVTEQEILKRSGKL-NNVAWAFGLGLERLAMV 304 (428)
Q Consensus 234 l~~L~~~---~~~~~~~~~~p~~hPg-----~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~-~~v~~afEL~Le~L~m~ 304 (428)
++.||++ -++|+++.. |-.|. -.-||+++|-.|--+-. ..+ --|++ .||..-.-.|||||+|.
T Consensus 99 L~~lGid~~~hDIRFVEDn--WEsPTLGAwGlGWEVWldGMEITQFTY--FQQ----vGGi~~~pv~~EITYGLERiamy 170 (283)
T PRK09348 99 LEALGIDPLEHDIRFVEDN--WESPTLGAWGLGWEVWLDGMEVTQFTY--FQQ----VGGIECKPVTGEITYGLERLAMY 170 (283)
T ss_pred HHHhCCCccccceeEeecC--CCCCcccccccceEEEECCeeeeeeee--eee----eCCeeccccceeeehhHHHHHHH
Confidence 3567764 346777653 44443 44589999975533310 000 01121 12222334589999999
Q ss_pred hcCCccc
Q 014218 305 LFDIPDI 311 (428)
Q Consensus 305 ~~~i~di 311 (428)
+-+++.+
T Consensus 171 lQ~vd~v 177 (283)
T PRK09348 171 LQGVDNV 177 (283)
T ss_pred HhCCCce
Confidence 8887765
No 162
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=25.13 E-value=3.1e+02 Score=21.58 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=39.7
Q ss_pred CCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEc--CCCC-CeeEEEEEEEecCCCCCCHHHHHHHHHH
Q 014218 338 SKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFT--NKKG-MTSHCYRIAYRSMERSLTDEDINELQWN 414 (428)
Q Consensus 338 SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~--g~~g-kkSl~~ri~yrs~drTLt~eEV~~~~~~ 414 (428)
-.||-. ..+-++.+.+- ++.+.|.++-.+.+-++.-..+-. .+.| ..|+++++.-+| .++++++.+.
T Consensus 5 ~efP~~-y~~KvIg~~~~---~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s------~eq~~~iy~~ 74 (85)
T PF04359_consen 5 IEFPCD-YPFKVIGKAEE---DFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVES------AEQVDAIYRE 74 (85)
T ss_dssp S-SSCE-EEEEEEEC-ST---THHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESS------HHHHHHHHHH
T ss_pred ccCCCc-ceEEEEEECcH---hHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECC------HHHHHHHHHH
Confidence 356655 78888887533 355555554333222221222222 2455 588999998888 8999988876
Q ss_pred HH
Q 014218 415 VR 416 (428)
Q Consensus 415 i~ 416 (428)
+.
T Consensus 75 L~ 76 (85)
T PF04359_consen 75 LK 76 (85)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 163
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=24.53 E-value=15 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHH
Q 014218 395 AYRSMERSLTDEDINELQWNVREQV 419 (428)
Q Consensus 395 ~yrs~drTLt~eEV~~~~~~i~~~l 419 (428)
.|.+..+.||+||++++.+.+.+.+
T Consensus 2 ~~~Dls~~lTeEEl~~~i~~L~~~~ 26 (61)
T TIGR01639 2 KYNDLSKKLSKEELNELINSLDEIP 26 (61)
T ss_pred ChhHHhHHccHHHHHHHHHhhcCCC
Confidence 4567789999999999998876544
No 164
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=23.54 E-value=83 Score=25.44 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=31.4
Q ss_pred ccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhc
Q 014218 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVA 368 (428)
Q Consensus 332 ~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~ 368 (428)
+.|+|++.-|...+-. |.||.+.+.++++..||+.-
T Consensus 4 i~~~~~g~~p~l~k~k-flv~~~~tv~~~~~~lrk~L 39 (87)
T cd01612 4 IRFKPIGSAPILKQKV-FKISATQSFQAVIDFLRKRL 39 (87)
T ss_pred EEEEECCCCccccccE-EEeCCCCCHHHHHHHHHHHh
Confidence 5689999999998874 66899999999999999863
No 165
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=23.40 E-value=4.5e+02 Score=25.13 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Q 014218 357 ENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKL 423 (428)
Q Consensus 357 ~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l 423 (428)
.+++.+.+++. +-+.+|.=+.+.+ .|+..+...+..+ .+..++=+|.+++.++|++.+.+++
T Consensus 207 ~~~i~~~i~~~--~~v~~v~~~~~~~--~g~~~~~v~i~v~-v~~~~~v~~~~~i~~~i~~~l~~~~ 268 (284)
T PF01545_consen 207 VEKIRRIIESV--PGVIEVHDLRVWQ--VGRNKYVVEIHVQ-VDPDMSVEEAHEIRERIEKRLREKF 268 (284)
T ss_dssp HHHHHHHHHHT--SS-SEEEEEEEEE--ETT-EEEEEEEEE-ETTTSBHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHhhccC--CceEeccceEEEE--ecCCcEEEEEEEE-eCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 36777777663 3366666666554 4444555555555 6777799999999999999999987
No 166
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=22.63 E-value=91 Score=26.15 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCccc
Q 014218 402 SLTDEDINELQWNVREQVQSKLNVVL 427 (428)
Q Consensus 402 TLt~eEV~~~~~~i~~~l~~~l~~~L 427 (428)
.=|-+||-++.+.|++.+.+++|++|
T Consensus 72 ~Ata~dv~~Li~~v~~~V~~~~Gi~L 97 (105)
T PF02873_consen 72 GATAADVLALIEEVRERVKEKFGIEL 97 (105)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHS--B
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCee
Confidence 44789999999999999999999987
No 167
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=21.91 E-value=7.4e+02 Score=26.95 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCcccccchhHHHHHHHh---------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCccccccc
Q 014218 155 SQTVLRCHTSAHQAELLK---------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYA 222 (428)
Q Consensus 155 e~~~LRtsL~~~ll~~l~---------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~ 222 (428)
....||+-|.-++.-.++ .|..+-.||++||..-..+. ...+|.||+.-....+..- .++-
T Consensus 137 ~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~-------~~~~ 209 (539)
T PRK14894 137 SFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYFVMPGTD-------EEWH 209 (539)
T ss_pred cceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEEeCCCch-------HHHH
Confidence 457899999888765553 57889999999986422222 2456778877655544330 1111
Q ss_pred HHHHHHHHHHHHHHhccc-ceeEEeec---cC-CCCCCCceEEEEEC-CeeEEEeee
Q 014218 223 AKDLKRCLEGLARHLFGA-VEMRWVDT---YF-PFTNPSYELEIFFK-ENWLEVLGC 273 (428)
Q Consensus 223 f~dLKg~Le~Ll~~L~~~-~~~~~~~~---~~-p~~hPg~~a~I~~~-g~~iGvlG~ 273 (428)
-|.+.... ..+..+|++ -.+++..- +. .|-...+-+++.+. ..|+++.||
T Consensus 210 ~y~~~~~~-~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~Gw~E~~Gi 265 (539)
T PRK14894 210 QRWLEARL-AWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIGVQEIEGI 265 (539)
T ss_pred HHHHHHHH-HHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCCCCeEEEEEe
Confidence 23343333 455667774 23454321 11 13344456777663 359999975
No 168
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=21.55 E-value=92 Score=25.84 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 014218 400 ERSLTDEDINELQWNVRE 417 (428)
Q Consensus 400 drTLt~eEV~~~~~~i~~ 417 (428)
-|.||++||.++...+.+
T Consensus 33 ~r~Ltd~ev~~Va~~L~~ 50 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAELAA 50 (96)
T ss_dssp TTTS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 478999999999988765
No 169
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=1.5e+02 Score=30.92 Aligned_cols=50 Identities=32% Similarity=0.487 Sum_probs=37.7
Q ss_pred eecc---HHHHHHcCCCC---------------ceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCC
Q 014218 274 GVTE---QEILKRSGKLN---------------NVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFK 335 (428)
Q Consensus 274 G~ih---P~vl~~~gi~~---------------~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fk 335 (428)
|-++ ++.+++.|... |- -.|+|+.||+...+.|+++||- .-
T Consensus 377 GSlREe~~~~l~e~g~~~~~~eWYldLRryG~vph-gGFGlGfER~lq~~tG~~nIkd--------------------~I 435 (446)
T KOG0554|consen 377 GSLREERKARLKERGLTREELEWYLDLRRYGSVPH-GGFGLGFERMLQYLTGNDNIKD--------------------VI 435 (446)
T ss_pred cccchhhHHHHHhcCCCccccceehhhhhcCCCCC-CcccccHHHHHHHHhCCcchhh--------------------ce
Confidence 6666 77888887651 11 2589999999999999998852 46
Q ss_pred CCCCCCCcc
Q 014218 336 PFSKYPPCY 344 (428)
Q Consensus 336 p~SkyP~~~ 344 (428)
||++||...
T Consensus 436 PFpR~~~s~ 444 (446)
T KOG0554|consen 436 PFPRYPGSA 444 (446)
T ss_pred ecCCCcccc
Confidence 899999764
No 170
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=21.32 E-value=72 Score=31.43 Aligned_cols=68 Identities=31% Similarity=0.636 Sum_probs=42.2
Q ss_pred CCCceEEEEECCe--eEEEeee-eeccHHHHHH--cCCCCceEEEEEechhHHHHhhcCCccchhccccch-hhhhhccc
Q 014218 254 NPSYELEIFFKEN--WLEVLGC-GVTEQEILKR--SGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDE-RFTSQFSQ 327 (428)
Q Consensus 254 hPg~~a~I~~~g~--~iGvlG~-G~ihP~vl~~--~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~-rf~~qf~~ 327 (428)
--|..+.|-++|. |-|..|. |-+.|+|+++ ++-+..+ |+.|.=| ..+|-|-|- ||.+|. |.-.|..+
T Consensus 154 L~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDi-W~cGViL---fiLL~G~~P---F~~~~~~rlye~I~~ 226 (355)
T KOG0033|consen 154 LADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDI-WACGVIL---YILLVGYPP---FWDEDQHRLYEQIKA 226 (355)
T ss_pred ecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchh-hhhhHHH---HHHHhCCCC---CCCccHHHHHHHHhc
Confidence 3445555555543 7788886 9999999996 4444444 8777543 334445443 898665 55555555
Q ss_pred C
Q 014218 328 G 328 (428)
Q Consensus 328 ~ 328 (428)
+
T Consensus 227 g 227 (355)
T KOG0033|consen 227 G 227 (355)
T ss_pred c
Confidence 4
No 171
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=21.26 E-value=6.1e+02 Score=24.02 Aligned_cols=62 Identities=6% Similarity=0.112 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q 014218 356 TENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSK 422 (428)
Q Consensus 356 ~~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~ 422 (428)
..+++.+.+.+. +-+.+|.=+...+.+.|+.-+...+.. +.++|-+|..++.+++++.+.++
T Consensus 193 ~~~~i~~~i~~~--~~v~~v~~~~~~~~G~~~~~v~~~v~v---~~~~~~~~ah~i~~~i~~~i~~~ 254 (268)
T TIGR01297 193 DLEEIKKAILSI--PGVKGVHDLHIWRIGPGKLFLDVHVVV---DPDLDLKQAHDIALEIEREILKR 254 (268)
T ss_pred cHHHHHHHHhcC--CCcccceEeEEEEcCCCCEEEEEEEEE---CCCCChhHHHHHHHHHHHHHHHh
Confidence 467777777754 335555444444334445666666665 44567788888888888888765
No 172
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=21.15 E-value=3.1e+02 Score=19.44 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=37.7
Q ss_pred ecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHH
Q 014218 351 INESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNV 415 (428)
Q Consensus 351 v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i 415 (428)
+|.+++..+|.+.....|. ++.+.+..- ..|+..-+=-+.|.+ .+++..+.+.+
T Consensus 6 lp~~~t~~~l~~~f~~~g~--i~~~~~~~~---~~~~~~~~a~V~F~~------~~~a~~a~~~l 59 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGK--IESIKVMRN---SSGKSKGYAFVEFES------EEDAEKALEEL 59 (70)
T ss_dssp ETTTSSHHHHHHHHHTTST--EEEEEEEEE---TTSSEEEEEEEEESS------HHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHhhh--ccccccccc---ccccccceEEEEEcC------HHHHHHHHHHc
Confidence 4889999999999999765 566666655 344544444678877 66766666543
No 173
>PF12720 DUF3807: Protein of unknown function (DUF3807); InterPro: IPR024526 This is a family of conserved fungal proteins of unknown function.
Probab=20.67 E-value=1e+02 Score=28.31 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 014218 400 ERSLTDEDINELQWNVREQV 419 (428)
Q Consensus 400 drTLt~eEV~~~~~~i~~~l 419 (428)
-||||||+|.-....=+.+|
T Consensus 47 KRTLTDEQI~IFRHSEI~aL 66 (172)
T PF12720_consen 47 KRTLTDEQIEIFRHSEIQAL 66 (172)
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 49999999987654433344
Done!