Query 014218
Match_columns 428
No_of_seqs 370 out of 2202
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmq_A Phenylalanyl-tRNA synth 100.0 4.2E-89 1.4E-93 699.8 40.9 367 55-428 13-414 (415)
2 2rhq_B Phenylalanyl-tRNA synth 100.0 6.8E-57 2.3E-61 494.7 33.9 296 89-427 486-795 (795)
3 3pco_B Phenylalanyl-tRNA synth 100.0 4E-57 1.4E-61 495.3 20.3 292 97-428 490-794 (795)
4 1b7y_B Phers, protein (phenyla 100.0 9.2E-55 3.2E-59 476.1 28.1 280 94-428 487-780 (785)
5 2odr_B Phosphoseryl-tRNA synth 100.0 2.2E-52 7.4E-57 437.2 19.3 273 88-404 57-439 (648)
6 2du7_A O-phosphoseryl-tRNA syn 100.0 4.6E-52 1.6E-56 432.6 17.6 272 88-403 49-431 (549)
7 2odr_A Phosphoseryl-tRNA synth 100.0 7.6E-52 2.6E-56 433.4 19.3 273 88-404 57-439 (665)
8 3pco_A Phenylalanyl-tRNA synth 100.0 1.5E-51 5.2E-56 408.4 18.9 229 77-326 91-327 (327)
9 2odr_D Phosphoseryl-tRNA synth 100.0 8.7E-52 3E-56 433.3 18.0 274 88-405 57-440 (685)
10 2odr_C Phosphoseryl-tRNA synth 100.0 2.8E-51 9.5E-56 430.4 17.3 272 88-403 57-438 (701)
11 1b7y_A Phers, protein (phenyla 100.0 1.8E-46 6.1E-51 376.0 24.7 229 77-326 85-347 (350)
12 2rhq_A Phenylalanyl-tRNA synth 100.0 4E-45 1.4E-49 359.7 24.1 232 76-327 36-288 (294)
13 3l4g_A Phenylalanyl-tRNA synth 100.0 3.9E-43 1.3E-47 364.4 23.7 231 77-324 206-489 (508)
14 2du3_A O-phosphoseryl-tRNA syn 100.0 7.3E-40 2.5E-44 341.3 20.7 273 76-387 33-410 (534)
15 3ig2_A Phenylalanyl-tRNA synth 100.0 6.8E-32 2.3E-36 253.8 18.1 191 97-301 5-212 (213)
16 3ica_A Phenylalanyl-tRNA synth 100.0 1.1E-31 3.7E-36 252.4 18.7 191 97-301 5-212 (213)
17 3qtc_A Pyrrolysyl-tRNA synthet 100.0 2.9E-30 9.9E-35 253.5 21.1 201 87-314 68-276 (290)
18 3l4g_B Phenylalanyl-tRNA synth 100.0 2.5E-30 8.6E-35 276.2 20.9 192 90-301 385-588 (589)
19 3dsq_A Pyrrolysyl-tRNA synthet 99.9 1.3E-26 4.3E-31 227.2 20.0 205 87-315 62-274 (288)
20 1nnh_A Asparaginyl-tRNA synthe 99.5 8.4E-13 2.9E-17 129.4 20.8 188 98-313 18-280 (294)
21 1x54_A Asparaginyl-tRNA synthe 98.8 2.1E-07 7E-12 95.8 17.5 96 96-205 136-232 (434)
22 1wyd_A Hypothetical aspartyl-t 98.7 5.1E-07 1.8E-11 92.7 17.6 96 96-205 135-231 (429)
23 1n9w_A Aspartyl-tRNA synthetas 98.5 1.3E-06 4.5E-11 89.5 16.0 97 96-206 126-223 (422)
24 3a74_A Lysyl-tRNA synthetase; 98.3 2.8E-05 9.5E-10 81.1 20.1 95 99-205 178-273 (493)
25 1l0w_A Aspartyl-tRNA synthetas 98.1 0.00035 1.2E-08 74.1 22.3 92 100-205 149-243 (580)
26 3a5y_A GENX, putative lysyl-tR 97.5 0.00053 1.8E-08 68.3 12.0 113 99-237 40-158 (345)
27 1e1o_A Lysyl-tRNA synthetase, 97.4 0.00074 2.5E-08 70.5 11.9 112 100-237 188-300 (504)
28 3bju_A Lysyl-tRNA synthetase; 97.3 0.001 3.5E-08 69.7 11.8 112 100-237 181-293 (521)
29 4ex5_A Lysine--tRNA ligase; st 97.3 0.0014 4.7E-08 68.7 11.8 112 100-237 209-321 (529)
30 3nem_A Aspartyl-tRNA synthetas 97.0 0.0031 1.1E-07 64.7 11.2 90 100-205 142-235 (438)
31 2xgt_A Asparaginyl-tRNA synthe 97.0 0.0025 8.7E-08 65.3 10.3 92 100-205 137-229 (435)
32 1c0a_A Aspartyl tRNA synthetas 97.0 0.0066 2.2E-07 64.5 13.4 111 100-238 143-256 (585)
33 3i7f_A Aspartyl-tRNA synthetas 96.8 0.0068 2.3E-07 63.7 11.9 91 100-204 249-341 (548)
34 2dq3_A Seryl-tRNA synthetase; 96.7 0.082 2.8E-06 53.9 18.8 189 99-306 176-397 (425)
35 1eov_A ASPRS, aspartyl-tRNA sy 96.6 0.01 3.4E-07 61.7 11.5 87 101-203 184-274 (487)
36 4ah6_A Aspartate--tRNA ligase, 96.6 0.021 7.1E-07 60.8 13.8 112 100-239 153-267 (617)
37 3m4p_A Ehasnrs, asparaginyl-tR 96.6 0.0062 2.1E-07 62.7 9.4 92 100-205 161-253 (456)
38 3rac_A Histidine-tRNA ligase; 96.4 0.018 6.3E-07 57.7 11.7 130 91-239 33-179 (373)
39 1z7m_A ATP phosphoribosyltrans 96.4 0.011 3.7E-07 58.7 9.8 132 90-239 31-172 (344)
40 2dq0_A Seryl-tRNA synthetase; 96.4 0.1 3.5E-06 53.6 16.9 186 99-306 197-418 (455)
41 4e51_A Histidine--tRNA ligase; 96.2 0.027 9.2E-07 58.1 11.4 124 98-239 49-185 (467)
42 1ses_A Seryl-tRNA synthetase; 96.1 0.15 5.1E-06 51.8 16.5 188 99-305 170-391 (421)
43 3od1_A ATP phosphoribosyltrans 96.1 0.031 1.1E-06 56.5 11.3 98 97-205 26-134 (400)
44 1nj8_A Proline-tRNA synthetase 96.0 0.16 5.5E-06 52.2 16.0 190 98-305 41-264 (459)
45 3err_A Fusion protein of micro 95.8 0.38 1.3E-05 50.4 17.9 189 99-304 275-499 (536)
46 1qe0_A Histidyl-tRNA synthetas 95.7 0.043 1.5E-06 55.3 10.4 128 96-240 17-157 (420)
47 1hc7_A Prolyl-tRNA synthetase; 95.7 0.24 8.1E-06 51.2 16.1 189 98-305 47-269 (477)
48 1evl_A Threonyl-tRNA synthetas 95.5 0.045 1.5E-06 55.1 9.6 125 98-239 33-172 (401)
49 1h4v_B Histidyl-tRNA synthetas 95.4 0.076 2.6E-06 53.6 11.0 101 94-202 16-129 (421)
50 1nyr_A Threonyl-tRNA synthetas 95.4 0.076 2.6E-06 56.9 11.4 125 98-239 274-415 (645)
51 3net_A Histidyl-tRNA synthetas 95.4 0.074 2.5E-06 54.7 10.8 101 98-206 29-152 (465)
52 1wle_A Seryl-tRNA synthetase; 95.3 1.3 4.5E-05 45.9 19.8 188 100-305 224-447 (501)
53 1htt_A Histidyl-tRNA synthetas 95.1 0.092 3.1E-06 53.0 10.3 126 96-239 19-156 (423)
54 1wu7_A Histidyl-tRNA synthetas 94.9 0.18 6.2E-06 51.1 12.1 123 97-240 22-155 (434)
55 3lc0_A Histidyl-tRNA synthetas 94.9 0.1 3.4E-06 53.7 10.1 99 97-205 45-154 (456)
56 3lss_A Seryl-tRNA synthetase; 94.9 0.54 1.9E-05 48.5 15.4 161 99-273 208-393 (484)
57 2j3l_A Prolyl-tRNA synthetase; 94.9 0.33 1.1E-05 51.0 14.2 127 98-240 50-191 (572)
58 3vbb_A Seryl-tRNA synthetase, 94.8 0.87 3E-05 47.4 16.8 162 99-273 201-395 (522)
59 4g84_A Histidine--tRNA ligase, 94.7 0.3 1E-05 49.8 12.9 100 98-205 31-137 (464)
60 4g85_A Histidine-tRNA ligase, 94.6 0.22 7.4E-06 51.8 12.0 100 98-205 84-190 (517)
61 1nj1_A PROR, proline-tRNA synt 94.6 0.63 2.1E-05 48.3 15.4 198 96-305 67-296 (501)
62 1ati_A Glycyl-tRNA synthetase; 94.6 1.4 4.6E-05 45.8 17.8 110 156-273 182-308 (505)
63 2i4l_A Proline-tRNA ligase; al 94.3 0.17 5.8E-06 51.9 10.1 129 97-240 69-211 (458)
64 2cja_A Seryl-tRNA synthetase; 94.2 0.58 2E-05 48.8 13.9 141 154-306 316-494 (522)
65 3a32_A Probable threonyl-tRNA 94.1 0.35 1.2E-05 49.7 12.1 126 97-239 51-195 (471)
66 1qf6_A THRRS, threonyl-tRNA sy 94.0 0.12 4.2E-06 55.3 8.7 124 99-239 275-413 (642)
67 3mf2_A BLL0957 protein; aminoa 93.8 0.95 3.2E-05 44.6 13.7 196 95-303 60-309 (346)
68 3uh0_A Threonyl-tRNA synthetas 93.5 0.38 1.3E-05 49.4 10.9 125 99-240 68-212 (460)
69 3qne_A Seryl-tRNA synthetase, 93.3 3.1 0.00011 42.9 17.2 164 103-286 193-383 (485)
70 3ial_A Prolyl-tRNA synthetase; 93.2 0.6 2E-05 48.7 11.9 189 99-304 59-280 (518)
71 4hvc_A Bifunctional glutamate/ 91.5 4.3 0.00015 42.2 15.8 190 99-305 65-290 (519)
72 4ah6_A Aspartate--tRNA ligase, 87.5 0.77 2.6E-05 48.8 6.5 81 256-361 485-588 (617)
73 1usy_A ATP phosphoribosyltrans 87.2 1.1 3.7E-05 42.6 6.9 109 101-239 6-122 (275)
74 1g5h_A Mitochondrial DNA polym 83.7 21 0.00073 36.2 15.0 141 154-302 134-304 (454)
75 3ikl_A DNA polymerase subunit 82.4 10 0.00035 38.7 11.9 137 157-302 147-314 (459)
76 2zt5_A Glycyl-tRNA synthetase; 77.4 59 0.002 34.9 16.4 58 152-209 235-304 (693)
77 1c0a_A Aspartyl tRNA synthetas 73.5 11 0.00039 39.6 9.4 53 257-313 472-550 (585)
78 2qt7_A Receptor-type tyrosine- 71.9 5.3 0.00018 31.6 4.8 39 387-427 44-82 (91)
79 3a5y_A GENX, putative lysyl-tR 71.6 4.9 0.00017 39.5 5.7 22 292-313 315-336 (345)
80 4ex5_A Lysine--tRNA ligase; st 50.0 11 0.00039 39.1 4.0 28 284-313 491-518 (529)
81 1eov_A ASPRS, aspartyl-tRNA sy 49.4 13 0.00043 38.3 4.2 53 257-313 398-474 (487)
82 3byp_A CZRB protein; membrane 47.5 78 0.0027 23.9 7.7 66 356-425 11-76 (94)
83 3i7f_A Aspartyl-tRNA synthetas 47.1 16 0.00055 38.1 4.6 55 257-313 461-535 (548)
84 4hti_A Receptor-type tyrosine- 46.7 27 0.00092 27.9 4.8 38 388-427 52-89 (99)
85 2xgt_A Asparaginyl-tRNA synthe 42.5 16 0.00054 37.0 3.6 28 284-313 395-422 (435)
86 4hlb_A Uncharacterized protein 41.3 45 0.0015 25.7 5.1 69 349-425 17-86 (115)
87 1e1o_A Lysyl-tRNA synthetase, 39.8 15 0.00052 37.9 3.0 22 292-313 472-493 (504)
88 3bju_A Lysyl-tRNA synthetase; 39.3 24 0.00082 36.6 4.4 28 284-313 471-498 (521)
89 3nem_A Aspartyl-tRNA synthetas 38.6 21 0.00072 36.1 3.8 53 257-313 351-425 (438)
90 4f25_A Polyadenylate-binding p 38.2 81 0.0028 24.8 6.7 51 352-414 14-64 (115)
91 2zzt_A Putative uncharacterize 33.2 1.7E+02 0.0059 22.8 9.1 61 358-424 13-73 (107)
92 3m4p_A Ehasnrs, asparaginyl-tR 32.7 26 0.0009 35.6 3.4 22 292-313 422-443 (456)
93 2dnq_A RNA-binding protein 4B; 24.9 1.8E+02 0.0062 21.2 6.3 44 352-413 17-60 (90)
94 4gdk_A Ubiquitin-like protein 23.6 40 0.0014 26.4 2.2 36 331-367 7-42 (91)
95 2cqi_A Nucleolysin TIAR; RNA r 23.6 2.3E+02 0.008 21.2 7.3 50 352-413 24-73 (103)
96 2wh0_Q Pkcev3, protein kinase 23.2 62 0.0021 19.5 2.4 18 403-420 10-27 (31)
97 1nkz_B Light-harvesting protei 22.5 71 0.0024 21.3 2.9 18 402-419 2-19 (41)
98 3rf1_A Glycyl-tRNA synthetase 22.1 1.5E+02 0.0052 28.0 6.1 67 234-311 120-198 (311)
99 3w1s_C Ubiquitin-like protein 20.8 45 0.0015 26.2 1.9 47 328-377 7-53 (91)
100 2kvc_A Putative uncharacterize 20.8 65 0.0022 25.9 2.9 19 400-418 36-54 (103)
No 1
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=100.00 E-value=4.2e-89 Score=699.84 Aligned_cols=367 Identities=48% Similarity=0.884 Sum_probs=333.8
Q ss_pred cEEEECCEEeccCccccCCCCCCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCC-----CCcEEEccCCCccCc
Q 014218 55 SALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYP-----NKFNKFDDLCPIVSV 129 (428)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~-----~gf~e~~~~~pvvs~ 129 (428)
..++|+|+.|+ +|+| +|||++|+.+.|+++|.|..||+++++++|+++|.+++. .||+|++++++++|.
T Consensus 13 ~~~~~~~~~~~-----~~~~-~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~ 86 (415)
T 3cmq_A 13 SVVELLGKSYP-----QDDH-SNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTT 86 (415)
T ss_dssp SEEEETTEEEE-----CCSS-CCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEH
T ss_pred CcEEECCeeec-----cCcc-ccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccH
Confidence 55999999655 5544 899999999999999999999999999999999998732 289999865788899
Q ss_pred hhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEe-
Q 014218 130 KQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFY- 207 (428)
Q Consensus 130 ~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~- 207 (428)
++|||+|++|+|||+|.+.|++|.++..+|||||+|+++++++ ...++|++|+|||+|++|.+|+|.+||++|++++.
T Consensus 87 ~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~ 166 (415)
T 3cmq_A 87 WQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSK 166 (415)
T ss_dssp HHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEH
T ss_pred HHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEEec
Confidence 9999999999999999999999999999999999999999998 44599999999999999999999999999999952
Q ss_pred -----------------------cCCccccCcccccccHHHHHHHHHHHHHHh-cccceeEEeeccCCCCCCCceEEEEE
Q 014218 208 -----------------------PDEWGAAGLDATEYAAKDLKRCLEGLARHL-FGAVEMRWVDTYFPFTNPSYELEIFF 263 (428)
Q Consensus 208 -----------------------~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L-~~~~~~~~~~~~~p~~hPg~~a~I~~ 263 (428)
+.+|..+. +...++|+|+||+|+.+++.+ +.+.+++|.++++|++|||++|+|++
T Consensus 167 g~~f~~~~~~~~la~~~~g~~~~~~~~~~~~-~~vd~~f~dlKg~le~ll~~lfg~~~~~~~~~~~~p~~hPgr~a~I~~ 245 (415)
T 3cmq_A 167 HELFAGIKDGESLQLFEQSSRSAHKQETHTM-EAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF 245 (415)
T ss_dssp HHHTTTSTTGGGCCSBCCCCCCSSCCTTBCH-HHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTEEEEEEEEEEE
T ss_pred cceeccccccceEEEEEecCccccccccccc-ccccccHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCceEEEEEE
Confidence 12233211 111234899999999999997 55445788888899999999999999
Q ss_pred CCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCC--CccCCCCCCCC
Q 014218 264 KENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQL--GIKFKPFSKYP 341 (428)
Q Consensus 264 ~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~--~~~fkp~SkyP 341 (428)
+|+||+++|||+|||+|++++||+.+++|+|||+||+|+|++|||||||+||++|.||++||+.... ..+|+|+||||
T Consensus 246 ~g~wlE~lG~G~lhP~Vl~~~gl~~~vg~afel~le~l~~~~~~i~DiR~~~~~d~rfl~qf~~~~~~~~~~~~~~skfP 325 (415)
T 3cmq_A 246 HGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYP 325 (415)
T ss_dssp TTEEEEEEEEEEECHHHHHHTTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCC
T ss_pred CCeeEEEEEEEEeCHHHHHHcCCCCcceEEEEEcHHHHhhhhcCcchhhhhhcccHHHHHhcccccccccccccCcCCCC
Confidence 9999999999999999999999988877999999999999999999999999999999999987643 24899999999
Q ss_pred CcceeeeEEecCC-CCHHHHHHHHHhhcCCceeEEEEEEEEcC-CCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 014218 342 PCYKDMSFWINES-FTENNLCEVVRGVAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQV 419 (428)
Q Consensus 342 ~~~RDiSf~v~~~-~~~~~i~~~Ir~~~g~lle~V~l~D~y~g-~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l 419 (428)
++.||||||||++ +++++|+++||+++|++|++|+|||+|+| ++||||+||||+||++||||||+|||+++++|+++|
T Consensus 326 ~v~RDla~~v~~~~v~~~~i~~~ir~~~~~lle~v~lfDvy~g~~~gkkSla~rl~~r~~~rTLtd~ev~~~~~~i~~~l 405 (415)
T 3cmq_A 326 AVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAA 405 (415)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHGGGEEEEEEEEEEECTTTCCEEEEEEEEECCSSSCCCHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcCCCccHHHHHHHHHHhCCCceEEEEEEEEEeCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHhcCcccC
Q 014218 420 QSKLNVVLR 428 (428)
Q Consensus 420 ~~~l~~~LR 428 (428)
++++||+||
T Consensus 406 ~~~~ga~LR 414 (415)
T 3cmq_A 406 VQLLGVEGR 414 (415)
T ss_dssp HHHSCCEEC
T ss_pred HHHhCCEeC
Confidence 999999998
No 2
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=6.8e-57 Score=494.72 Aligned_cols=296 Identities=14% Similarity=0.199 Sum_probs=253.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCc-cCchhhhhhcCCCCCC-ccccccccccccCCcccccchhHH
Q 014218 89 QLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPI-VSVKQNFDDVLVPADH-VSRSYNDTYYVDSQTVLRCHTSAH 166 (428)
Q Consensus 89 ~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pv-vs~~~nfd~L~~p~dh-p~r~~~~np~~~e~~~LRtsL~~~ 166 (428)
....+..||.+.++++||+.|.++ ||+|+. ++. ++.+++ +.|+ |+.+ ++++ .||+++++++|||||+|+
T Consensus 486 ~~~~g~~~~~~~~~~~ir~~L~~~---Gf~Evi--tysfvs~~~~-~~l~-~~~~~~v~L--~NPis~e~svLRtsLlpg 556 (795)
T 2rhq_B 486 EVTSGELTDRQHKTRTLKETLEGA---GLNQAI--TYSLVSKDHA-KDFA-LQERPTISL--LMPMSEAHATLRQSLLPH 556 (795)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHT---TCEECC--CCSEECTTTT-TTTC-SSCCCCEEC--SSCSCTTSSEECSCSHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHC---CCEEEe--cCCccCHHHH-HhhC-CCCCceEEE--cCCCchhhhhhhhccHHH
Confidence 346678999999999999999999 999997 444 444444 6665 5556 4666 999999999999999999
Q ss_pred HHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEE--ecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 167 QAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIF--YPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 167 ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~--~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
++++++ .++++||+|+||++++.+.+| +.++++.|+... .+..|..+ ...++|+|+||+|+.+++.|
T Consensus 557 LL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~---~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 557 LIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGK---KEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTE---EEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCC---CCCCCHHHHHHHHHHHHHHc
Confidence 999996 579999999999986543345 666777776654 34678543 24689999999999999999
Q ss_pred cccceeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhcccc
Q 014218 238 FGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSS 317 (428)
Q Consensus 238 ~~~~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~ 317 (428)
+.+ +++.+.++|++|||++|+|+++|+.||++ |++||+|++++|++.+ |+|||+||+|+|..
T Consensus 633 G~~--~~~~~~~~p~~hPGr~a~I~~~g~~IG~~--G~lHP~Vl~~~~l~~~--~afEL~le~L~~~~------------ 694 (795)
T 2rhq_B 633 NLE--FSYKAGKIEGLHPGRTAIVSLEGQDIGFI--GELHPQVAADNDLKRT--YVFELNYDAMMQVA------------ 694 (795)
T ss_dssp TCC--CEEEECCCTTEEEEEEEEEEETTEEEEEE--EEECHHHHHHTTCCSE--EEEEEEHHHHTTCC------------
T ss_pred CCc--EEEEECCCCcccCCcEEEEEECCEEEEEE--EEECHHHHHHcCCCCc--EEEEEEHHHHhhhc------------
Confidence 754 56777889999999999999999988888 9999999999999877 79999999997531
Q ss_pred chhhhhhcccCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEE
Q 014218 318 DERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRI 394 (428)
Q Consensus 318 d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri 394 (428)
.+ ..+|+|+||||++.||||||||+++++++|.++||+.++++|++|+|||+|+| ++||||+|||+
T Consensus 695 ----------~~-~~~~~~~skfP~v~RDlA~vv~~~v~~~~i~~~i~~~~~~ll~~v~lFDvY~G~~~~~gkKSla~~l 763 (795)
T 2rhq_B 695 ----------VG-YINYEQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKKSVAIRL 763 (795)
T ss_dssp ----------CC-SCCCCCCCSSCCEEEEEECBEETTSCHHHHHHHHHHHCGGGEEEEEEEEEEC-----CCEEEEEEEE
T ss_pred ----------cc-CCccCCCCCCCCcceeEEEEECCCCCHHHHHHHHHHhCccceeeeEEEEEecCCCCCCCcEEEEEEE
Confidence 10 14799999999999999999999999999999999999999999999999999 69999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q 014218 395 AYRSMERSLTDEDINELQWNVREQVQSKLNVVL 427 (428)
Q Consensus 395 ~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~L 427 (428)
+||++||||||+|||+++++|+++|+++ |++|
T Consensus 764 ~~r~~~rTLtd~ei~~~~~~i~~~l~~~-ga~L 795 (795)
T 2rhq_B 764 NYLDTEDTLTDERVSKIHDKILEALQAE-GATI 795 (795)
T ss_dssp EECCSSSCCCHHHHHHHHHHHHHHHHHH-TCBC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHc-CCCC
Confidence 9999999999999999999999999999 9986
No 3
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=4e-57 Score=495.30 Aligned_cols=292 Identities=15% Similarity=0.172 Sum_probs=251.7
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh----
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---- 172 (428)
+...+++++|+.|.++ ||+|++ ++.+++.+.++.++ +.++++++ .||+++++++||++|+|+++++++
T Consensus 490 ~~~~~~~~~r~~l~~~---G~~Evi--tysf~~~~~~~~~~-~~~~~v~l--~NPis~e~svmRtsLlpgLL~~~~~N~~ 561 (795)
T 3pco_B 490 EADLSLKRVKTLLNDK---GYQEVI--TYSFVDPKVQQMIH-PGVEALLL--PSPISVEMSAMRLSLWTGLLATVVYNQN 561 (795)
T ss_dssp TTBCCHHHHHHHHHHT---TCEECC--CCSEECHHHHHHHS-SSCCCCBC--SSCSCSTTCEECSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC---CCeeee--ccCcCCHHHHHhhC-CCCCeEEE--cCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344789999999999 999996 77765566667666 55566666 999999999999999999999996
Q ss_pred ---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEE---ecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEe
Q 014218 173 ---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIF---YPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWV 246 (428)
Q Consensus 173 ---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~---~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~ 246 (428)
.++++||+|+||.+++... ..|.+.++.++.+. .+..|..+. ..+||+++||.+|.++..++....+++.
T Consensus 562 r~~~~v~lFEiG~Vf~~~~~~~-~~~~e~~~la~~~~G~~~~~~w~~~~---~~~dF~dlKg~ve~ll~~lg~~~~~~~~ 637 (795)
T 3pco_B 562 RQQNRVRIFESGLRFVPDTQAP-LGIRQDLMLAGVICGNRYEEHWNLAK---ETVDFYDLKGDLESVLDLTGKLNEVEFR 637 (795)
T ss_dssp SSCCCCEEEEEEEEEEECTTSS-TTEEEEEEEEEEEESBSSCSCSSSCC---CBCCHHHHHHHHHHHTTTSSCCSSCCEE
T ss_pred CCCCCccEEEeeeEEecCCCcc-cCcchhheEEEEEECCCcccccccCC---CCCCHHHHHHHHHHHHHHcCCCcceEEE
Confidence 4799999999999865422 22444455555544 356787643 5789999999999999998752246677
Q ss_pred eccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcc
Q 014218 247 DTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFS 326 (428)
Q Consensus 247 ~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~ 326 (428)
+..+|++||||+|+|+++|+.||++ |+|||+++++|||+.++ ++|||+||+|..
T Consensus 638 ~~~~~~~hPGrsA~I~~~g~~iG~~--GelHP~v~~~~dl~~~v-~~~Eldld~L~~----------------------- 691 (795)
T 3pco_B 638 AEANPALHPGQSAAIYLKGERIGFV--GVVHPELERKLDLNGRT-LVFELEWNKLAD----------------------- 691 (795)
T ss_dssp CCCCTTEEEEEEEEECTTTSCCEEE--EEECTTTTTTTCCCSCE-EEEEEEGGGSSB-----------------------
T ss_pred ECCCCCCCCCCEEEEEECCEEEEEE--EEECHHHHHHcCCCCCE-EEEEEEHHHhhc-----------------------
Confidence 7788999999999999999999999 99999999999999996 899999998742
Q ss_pred cCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEEEEecCCCCC
Q 014218 327 QGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRIAYRSMERSL 403 (428)
Q Consensus 327 ~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri~yrs~drTL 403 (428)
.. .++|+|+||||++.||||||||+++++++|.++||+.++++|++|+|||+|+| ++||||+|||++||++||||
T Consensus 692 -~~-~~~~~~~skfP~v~RDlA~vv~~~v~~~~i~~~ir~~~~~ll~~V~lfDvY~g~~i~~gkKSla~~l~~r~~~rTL 769 (795)
T 3pco_B 692 -RV-VPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTL 769 (795)
T ss_dssp -CC-CCCCCCCCCSCCEEEEEEEEEETTSCHHHHHTTTSSTTTTTEEEEEECCCBCSTTSCTTEEEEEEEEEECCSSCCC
T ss_pred -cc-CCCcCCCCCCCCcceeEEEEeCCCCCHHHHHHHHHHhCcceEEEEEEEEEecCCCCCCCcEEEEEEEEEECCCCCC
Confidence 11 26799999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 404 TDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 404 t~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
||+|||+++++|+++|+++||++||
T Consensus 770 tdeev~~~~~ki~~~l~~~~ga~LR 794 (795)
T 3pco_B 770 EEEEIAATVAKCVEALKERFQASLR 794 (795)
T ss_dssp CHHHHHHHHHHHHHHTTTTTCCBCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCEeC
Confidence 9999999999999999999999998
No 4
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=9.2e-55 Score=476.10 Aligned_cols=280 Identities=20% Similarity=0.249 Sum_probs=239.1
Q ss_pred CCChHHHHHHHHHHHHhccCCCCcEEEccCCCc-cCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh
Q 014218 94 NQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPI-VSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 94 ~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pv-vs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~ 172 (428)
..||.+.++++||+.|.++ ||+|+. ++. ++.+++ +.|.. ..+++++ .||+++++++|||||+|+++++++
T Consensus 487 ~~~~~~~~~~~ir~~L~~~---Gf~Evi--tysfvs~~~~-~~l~~-~~~~v~L--~NPis~d~svLRtsLlpgLL~~l~ 557 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGL---GFQEVY--TYSFMDPEDA-RRFRL-DPPRLLL--LNPLAPEKAALRTHLFPGLVRVLK 557 (785)
T ss_dssp STTHHHHHHHHHHHHHHHH---TCEECC--CCSEECTTHH-HHTTC-CCCSCEE--SSCSSTTSSEECSCSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHC---CCEEEe--cCcccCHHHH-HhcCC-CCCeEEE--cCCCchhhhhhhhhhHHHHHHHHH
Confidence 6899999999999999999 999987 444 343343 55422 3345566 999999999999999999999996
Q ss_pred -----c---CCeEEEEeeEEecCCCCCCCCcceEEEEEEEEE--ecCCccccCcccccccHHHHHHHHHHHHHHhcccce
Q 014218 173 -----E---HNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIF--YPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVE 242 (428)
Q Consensus 173 -----~---~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~--~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~ 242 (428)
+ ++++||+|+||+ + +.++++.|+... .+..|. + ...++|+|+||+|+.++..++. +
T Consensus 558 ~N~~r~~~~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~-~---~~~vdf~dlKg~le~ll~~lgi--~ 623 (785)
T 1b7y_B 558 ENLDLDRPERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWA-K---ERLSGYFLLKGYLEALFARLGL--A 623 (785)
T ss_dssp HHHHHSCCSCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSS-S---CCBCSHHHHHHHHHHHHHHHTC--C
T ss_pred HHhhcCCCCCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccC-c---cCCcCHHHHHHHHHHHHHHcCC--c
Confidence 3 589999999998 2 455677776654 356785 3 2468999999999999999975 5
Q ss_pred eEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhh
Q 014218 243 MRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFT 322 (428)
Q Consensus 243 ~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~ 322 (428)
+++.++++|++|||++|+|+++|+.+|++ |+|||++++++|++ ++ |+|||+|| |+ .
T Consensus 624 ~~~~~~~~p~~hPGr~a~I~~~g~~iG~~--G~lHP~Vl~~~~l~-~v-~afEl~Ld-L~-~------------------ 679 (785)
T 1b7y_B 624 FRVEAQAFPFLHPGVSGRVLVEGEEVGFL--GALHPEIAQELELP-PV-HLFELRLP-LP-D------------------ 679 (785)
T ss_dssp CEEECCCCTTEEEEEEEEEEETTEEEEEE--EEECHHHHHHTTCC-CC-EEEEEEES-CC-C------------------
T ss_pred eEEeecCCCcccCceEEEEEECCEEEEEE--EEECHHHHHHCCCC-cE-EEEEEEee-hh-h------------------
Confidence 67777888999999999999999988888 99999999999999 75 89999999 74 2
Q ss_pred hhcccCCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEEEEEEcC---CCCCeeEEEEEEEecC
Q 014218 323 SQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN---KKGMTSHCYRIAYRSM 399 (428)
Q Consensus 323 ~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g---~~gkkSl~~ri~yrs~ 399 (428)
. . .+|+|+||||++.||||||||+++++++|.++||++++++|++|+|||+|+| ++||||+|||++||++
T Consensus 680 ----~-~--~~~~~~skfP~v~RDlA~vv~~~v~~~~i~~~i~~~~~~ll~~v~lfDvY~G~~i~~gkKSla~~l~~r~~ 752 (785)
T 1b7y_B 680 ----K-P--LAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHKSLAFHLRFRHP 752 (785)
T ss_dssp ----C-C--CCCCCCCCSCCEEEEECCCEESSSCHHHHHHHHHHHHCTTEEEEEEEECCCCTTSCTTEECCEEEEEECCS
T ss_pred ----C-c--ccccCCCCCCCcceeEEEEeCCCCCHHHHHHHHHHhCccceeEEEEEEEecCCCCCCCceEEEEEEEEECC
Confidence 1 1 4699999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218 400 ERSLTDEDINELQWNVREQVQSKLNVVLR 428 (428)
Q Consensus 400 drTLt~eEV~~~~~~i~~~l~~~l~~~LR 428 (428)
||||||+|||+++++|+++|+++ |++||
T Consensus 753 ~rTLtd~ei~~~~~~i~~~l~~~-ga~LR 780 (785)
T 1b7y_B 753 KRTLRDEEVEEAVSRVAEALRAR-GFGLR 780 (785)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHCC------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc-CCEee
Confidence 99999999999999999999999 99998
No 5
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=2.2e-52 Score=437.23 Aligned_cols=273 Identities=17% Similarity=0.222 Sum_probs=205.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCC-Cccccccc-ccccc----------
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPAD-HVSRSYND-TYYVD---------- 154 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~d-hp~r~~~~-np~~~---------- 154 (428)
+.++.|..||+..++++||+.|.++ ||+|++ +|++ +.++| +|++ ||+|...| ++|++
T Consensus 57 ~~~~~G~~HPl~~~~~~IR~if~~m---GF~E~~--~p~vese~~n-----~pq~gHpAR~~~D~tFyl~~P~~~~vg~~ 126 (648)
T 2odr_B 57 IKPVFGKTHPVNDTIENLRQAYLRM---GFEEYI--NPVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126 (648)
T ss_dssp CCCCCCBCCHHHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHH-----HHHHGGGHHHHHHTCEEEEBCCC------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC---CCEEee--CCEEeehhhh-----CCCcCCCccccCCceEEECCCCCCccccc
Confidence 4568999999999999999999999 999996 8887 44667 4566 88876555 44443
Q ss_pred -----------------------------------------------------------------------CCcccccch
Q 014218 155 -----------------------------------------------------------------------SQTVLRCHT 163 (428)
Q Consensus 155 -----------------------------------------------------------------------e~~~LRtsL 163 (428)
+.++|||||
T Consensus 127 ~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsL 206 (648)
T 2odr_B 127 DEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHM 206 (648)
T ss_dssp ---------------------------------------------------------------CCCCCCBCCSEEECCCT
T ss_pred hhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccc
Confidence 368999999
Q ss_pred hHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHH
Q 014218 164 SAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235 (428)
Q Consensus 164 ~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~ 235 (428)
+|+++.+++ .++++||+|+||++++. +.+|.+.+||++|+... ..++|+||||+|+.+++
T Consensus 207 lPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G------------~~vdF~DLKGvLE~LL~ 274 (648)
T 2odr_B 207 TSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAG------------EGVDINDGKAIAEGLLS 274 (648)
T ss_dssp HHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEEC------------TTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEEC------------CCCCHHHHHHHHHHHHH
Confidence 999999886 57999999999998776 77889999999998763 24689999999999999
Q ss_pred HhcccceeEEeecc--CCCCCCCceEEEEEC--C--eeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCc
Q 014218 236 HLFGAVEMRWVDTY--FPFTNPSYELEIFFK--E--NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIP 309 (428)
Q Consensus 236 ~L~~~~~~~~~~~~--~p~~hPg~~a~I~~~--g--~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~ 309 (428)
.|+. .+++|.++. .|++|||++|+|.++ | .|+.+.|||+|||+|++++||+.++ |+|||+||+|+|..++++
T Consensus 275 ~LGi-~~vrfrpse~~~p~yhPGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~V-~AFELgLErLaml~~gi~ 352 (648)
T 2odr_B 275 QFGF-TNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPV-MNLGLGVERLAMISGNFA 352 (648)
T ss_dssp TTTC-CCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCE-EEEEEEHHHHHHHHTTCS
T ss_pred HcCC-CeEEEEECCCCCcCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCE-EEEEEeHHHHHHHhcCCC
Confidence 9975 257777663 689999999999885 2 5777777899999999999999986 999999999999999999
Q ss_pred cchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec-CCCC--------HHHHHHHHHhhcCCceeEEEEEEE
Q 014218 310 DIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN-ESFT--------ENNLCEVVRGVAGDLVEEVRLIDN 380 (428)
Q Consensus 310 dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~-~~~~--------~~~i~~~Ir~~~g~lle~V~l~D~ 380 (428)
|||+|| |+++|+||++.|||||+|| ++++ +++|.++|++.++ |++|+|||+
T Consensus 353 DIR~~~------------------~~diSRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~~~g--LesV~LFDV 412 (648)
T 2odr_B 353 DVREMV------------------YPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKD--LKSPCELAI 412 (648)
T ss_dssp CHHHHH------------------CGGGSCCCCCHHHHHTTEEESCCCSSHHHHHHHHHHHHHHHHC-------------
T ss_pred cccccc------------------cCCcCCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcCC--CCeEEEEEE
Confidence 999854 7789999999999999999 8888 9999999999988 999999999
Q ss_pred EcC---CCCCeeEEEEEEEecCCCCCC
Q 014218 381 FTN---KKGMTSHCYRIAYRSMERSLT 404 (428)
Q Consensus 381 y~g---~~gkkSl~~ri~yrs~drTLt 404 (428)
|+| ++||||+||+++||+.||-|-
T Consensus 413 YeGe~I~eGKKSLAfsLtfr~~dr~l~ 439 (648)
T 2odr_B 413 EKTFSFGKTKKNVKINIFEKEEGKNLL 439 (648)
T ss_dssp ---------------------------
T ss_pred ecCCCCCCCceEEEEEEEEECCCCCcC
Confidence 999 799999999999999999763
No 6
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.6e-52 Score=432.61 Aligned_cols=272 Identities=18% Similarity=0.256 Sum_probs=235.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCC-Cccccccc-ccccc----------
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPAD-HVSRSYND-TYYVD---------- 154 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~d-hp~r~~~~-np~~~---------- 154 (428)
+..+.|..||+..+.++||+.|.++ ||+|++ +|++ +..+|| |++ ||+|...| ++|++
T Consensus 49 ~~~~~G~~HPl~~~~~~ir~~f~~m---GF~e~~--~p~ies~~~n~-----pq~ghpAr~~~D~tfyl~~p~~~~~g~~ 118 (549)
T 2du7_A 49 LKPVYGKPHPVMETIERLRQAYLRM---GFEEMI--NPVIVDEMEIY-----KQFGPEAMAVLDRCFYLAGLPRPDVGLG 118 (549)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHHTT---TCEECC--CCSCEEHHHHH-----HHTCTTHHHHGGGCCEEECCCCCCCSSS
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHC---CCEEee--CCeEeehHHhC-----CCcCCCcccccCceEEECCCCCcccccc
Confidence 3468899999999999999999999 999996 8887 456774 555 77765555 44433
Q ss_pred ------------------------------------------------------------------------CCcccccc
Q 014218 155 ------------------------------------------------------------------------SQTVLRCH 162 (428)
Q Consensus 155 ------------------------------------------------------------------------e~~~LRts 162 (428)
+.++||||
T Consensus 119 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTs 198 (549)
T 2du7_A 119 NEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSH 198 (549)
T ss_dssp STTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCST
T ss_pred hhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccc
Confidence 36799999
Q ss_pred hhHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHH
Q 014218 163 TSAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLA 234 (428)
Q Consensus 163 L~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll 234 (428)
|+|+++.+++ .++++||+|+||++++. +.+|.+.+||++|+... ..++|+||||+|+.++
T Consensus 199 LlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G------------~~vdF~DLKG~Le~ll 266 (549)
T 2du7_A 199 MTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVG------------EDVSVDDGKVVAEGLL 266 (549)
T ss_dssp THHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEEC------------TTCCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEEC------------CCCCHHHHHHHHHHHH
Confidence 9999999886 57999999999998775 67899999999998773 2468999999999999
Q ss_pred HHhcccceeEEeecc--CCCCCCCceEEEEEC--C--eeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCC
Q 014218 235 RHLFGAVEMRWVDTY--FPFTNPSYELEIFFK--E--NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDI 308 (428)
Q Consensus 235 ~~L~~~~~~~~~~~~--~p~~hPg~~a~I~~~--g--~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i 308 (428)
+.|+.. +++|.++. .|++|||++|+|.++ | .|+.+.|||+|||+|++++||+.++ |+|||+||+|+|..+++
T Consensus 267 ~~LGi~-~~rfrps~~~~p~yhPGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~v-~aFELgLErL~m~~~~i 344 (549)
T 2du7_A 267 AQFGFT-KFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPV-MNLGLGVERLAMIIYGY 344 (549)
T ss_dssp GGGTCC-CCCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCE-EEEEEBHHHHHHHHTTC
T ss_pred HHcCCC-eEEEEECCCCCcccCCceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCCe-EEEEEeHHHHHHHhcCC
Confidence 999752 46666653 688999999999985 3 4666666799999999999999886 99999999999999999
Q ss_pred ccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec-CCCC--------HHHHHHHHHhhcCCceeEEEEEE
Q 014218 309 PDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN-ESFT--------ENNLCEVVRGVAGDLVEEVRLID 379 (428)
Q Consensus 309 ~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~-~~~~--------~~~i~~~Ir~~~g~lle~V~l~D 379 (428)
+|||++| |+++|+||++.|||||+|| ++++ +++|.++|++.++ |++|+|||
T Consensus 345 ~dIR~~~------------------~~dlsrFPav~RDlAlvVd~~~Vp~~v~~~~~a~~I~~~i~~~~~--Le~V~LFD 404 (549)
T 2du7_A 345 EDVRAMV------------------YPQFYEYRLSDRDIAGMIRVDKVPILDEFYNFANELIDICIANKD--KESPCSVE 404 (549)
T ss_dssp SCSHHHH------------------SSSSSCCCCCHHHHHTTCCCSCCCSSHHHHHHHHHHHHHHCCCCC--CSSCCSCC
T ss_pred Ccccccc------------------cCCcccCCcccccEEEEEcHHhCCcccccchHHHHHHHHHHHhCC--CCceEEEE
Confidence 9999853 7889999999999999999 8888 9999999999887 99999999
Q ss_pred EEcC---CCCCeeEEEEEEEecCCCCC
Q 014218 380 NFTN---KKGMTSHCYRIAYRSMERSL 403 (428)
Q Consensus 380 ~y~g---~~gkkSl~~ri~yrs~drTL 403 (428)
+|+| ++||||+||+++||+.||-|
T Consensus 405 VY~G~~i~eGkKSlA~sl~~r~~dr~l 431 (549)
T 2du7_A 405 VKREFNFNGERRVIKVEIFENEPNKKL 431 (549)
T ss_dssp CCCCCCSSSSCCCCEECCCCCSTTSCS
T ss_pred EEcCCCCCCCceEEEEEEEEECCCCCc
Confidence 9999 79999999999999999987
No 7
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=7.6e-52 Score=433.40 Aligned_cols=273 Identities=17% Similarity=0.222 Sum_probs=205.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCC-Cccccccc-ccccc----------
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPAD-HVSRSYND-TYYVD---------- 154 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~d-hp~r~~~~-np~~~---------- 154 (428)
+.++.|..||+..++++||+.|.++ ||+|++ +|++ +.++| +|++ ||+|...| ++|++
T Consensus 57 ~~~~~G~~HPl~~~~~~IR~if~~m---GF~E~~--~p~vese~~n-----~pq~gHpAR~~~D~tFyL~~P~~~~vg~~ 126 (665)
T 2odr_A 57 IKPVFGKTHPVNDTIENLRQAYLRM---GFEEYI--NPVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126 (665)
T ss_dssp SCCCCCBCCHHHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHH-----HHHHGGGHHHHHHTCEEEEBCCC------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC---CCEEee--CCEEeeehhh-----CCCcCCCccccCCcEEEECCCCCCccccc
Confidence 4578999999999999999999999 999996 8887 44667 4566 88876555 44443
Q ss_pred -----------------------------------------------------------------------CCcccccch
Q 014218 155 -----------------------------------------------------------------------SQTVLRCHT 163 (428)
Q Consensus 155 -----------------------------------------------------------------------e~~~LRtsL 163 (428)
+.++|||||
T Consensus 127 ~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSL 206 (665)
T 2odr_A 127 DEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHM 206 (665)
T ss_dssp ---------------------------------------------------------------CCCCCCBCCSEEECCCT
T ss_pred hhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccc
Confidence 368999999
Q ss_pred hHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHH
Q 014218 164 SAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235 (428)
Q Consensus 164 ~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~ 235 (428)
+|+++.+++ .++++||+|+||++++. +.+|.+.+||++|+... ..++|+||||+|+.+++
T Consensus 207 lPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G------------~~vdF~DLKGvLE~LL~ 274 (665)
T 2odr_A 207 TSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAG------------EGVDINDGKAIAEGLLS 274 (665)
T ss_dssp HHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEEC------------TTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEEC------------CCCCHHHHHHHHHHHHH
Confidence 999999886 57999999999998776 77889999999998763 24689999999999999
Q ss_pred HhcccceeEEeecc--CCCCCCCceEEEEEC--C--eeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCc
Q 014218 236 HLFGAVEMRWVDTY--FPFTNPSYELEIFFK--E--NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIP 309 (428)
Q Consensus 236 ~L~~~~~~~~~~~~--~p~~hPg~~a~I~~~--g--~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~ 309 (428)
.|+. .+++|.++. .|++|||++|+|.++ | .|+.+.|||+|||+|++++||+.++ |+|||+||+|+|..++++
T Consensus 275 ~LGi-~~vrfrpse~~~p~yhPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V-~AFELgLErLaml~~gi~ 352 (665)
T 2odr_A 275 QFGF-TNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPV-MNLGLGVERLAMISGNFA 352 (665)
T ss_dssp TTTC-CCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCE-EEEEEEHHHHHHHHTTCS
T ss_pred HcCC-CeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCE-EEEEEeHHHHHHHhcCCC
Confidence 9975 257777663 689999999999885 2 5777777899999999999999986 999999999999999999
Q ss_pred cchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec-CCCC--------HHHHHHHHHhhcCCceeEEEEEEE
Q 014218 310 DIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN-ESFT--------ENNLCEVVRGVAGDLVEEVRLIDN 380 (428)
Q Consensus 310 dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~-~~~~--------~~~i~~~Ir~~~g~lle~V~l~D~ 380 (428)
|||+|| |+++|+||++.|||||+|| ++++ +++|.++|++.++ |++|+|||+
T Consensus 353 DIR~~~------------------~~diSRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~~~g--LesV~LFDV 412 (665)
T 2odr_A 353 DVREMV------------------YPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKD--LKSPCELAI 412 (665)
T ss_dssp CHHHHH------------------CGGGSCCCCCHHHHHTTEEESCCCSSHHHHHHHHHHHHHHHHC-------------
T ss_pred cccccc------------------cCCcCCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcCC--CCeEEEEEE
Confidence 999854 7789999999999999999 8888 9999999999988 999999999
Q ss_pred EcC---CCCCeeEEEEEEEecCCCCCC
Q 014218 381 FTN---KKGMTSHCYRIAYRSMERSLT 404 (428)
Q Consensus 381 y~g---~~gkkSl~~ri~yrs~drTLt 404 (428)
|+| ++||||+||+++||+.||-|-
T Consensus 413 YeGe~I~eGKKSLAfsLtfr~~dr~l~ 439 (665)
T 2odr_A 413 EKTFSFGKTKKNVKINIFEKEEGKNLL 439 (665)
T ss_dssp ---------------------------
T ss_pred ecCCCCCCCceEEEEEEEEECCCCCcC
Confidence 999 799999999999999999763
No 8
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=1.5e-51 Score=408.37 Aligned_cols=229 Identities=34% Similarity=0.653 Sum_probs=208.8
Q ss_pred CCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCccccccccccccC
Q 014218 77 NVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYNDTYYVDS 155 (428)
Q Consensus 77 nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~np~~~e 155 (428)
+||.++. ++..+.|..||++.++++|++.|.++ ||+|+. +|.+ +.++|||.|++|+|||+|...|+.|+++
T Consensus 91 ~id~TLP---~~~~~~G~~hp~~~~~~~Ir~if~~~---Gf~ev~--~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e 162 (327)
T 3pco_A 91 TIDVSLP---GRRIENGGLHPVTRTIDRIESFFGEL---GFTVAT--GPEIEDDYHNFDALNIPGHHPARADHDTFWFDT 162 (327)
T ss_dssp CCCTTSC---CCCCCCCCCCHHHHHHHHHHHHHHTT---TCBCCC--CCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSS
T ss_pred CCCCcCC---CCCCCCCCCCHHHHHHHHHHHHHHHC---CCeEEE--CCCccCCHHHHHhhCCCCCChhhcccccEEeCC
Confidence 5665543 67899999999999999999999999 999986 5655 7789999999999999998889999999
Q ss_pred CcccccchhHHHHHHHh---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHH
Q 014218 156 QTVLRCHTSAHQAELLK---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEG 232 (428)
Q Consensus 156 ~~~LRtsL~~~ll~~l~---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~ 232 (428)
.++|||||+|++++++. .++++||+|+|||+| .|.+|+|.|||++|+.+. ..++|+||||+|+.
T Consensus 163 ~~vLRThtsp~~lr~l~~~~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~------------~~v~f~dLKg~Le~ 229 (327)
T 3pco_A 163 TRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVD------------TNISFTNLKGTLHD 229 (327)
T ss_dssp SCEECSCTHHHHHHHHTTCCSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEE------------TTCCHHHHHHHHHH
T ss_pred CceecccCCHHHHHHHHhCCCCeeEEeeccEEecC-CCcccCCcccEEEEEEEC------------CCCCHHHHHHHHHH
Confidence 99999999999999998 689999999999998 689999999999988652 24689999999999
Q ss_pred HHHHhcc-cceeEEeeccCCCCCCCceEEEEE-CCeeEEEeeeeeccHHHHHHcCCCCc--eEEEEEechhHHHHhhcCC
Q 014218 233 LARHLFG-AVEMRWVDTYFPFTNPSYELEIFF-KENWLEVLGCGVTEQEILKRSGKLNN--VAWAFGLGLERLAMVLFDI 308 (428)
Q Consensus 233 Ll~~L~~-~~~~~~~~~~~p~~hPg~~a~I~~-~g~~iGvlG~G~ihP~vl~~~gi~~~--v~~afEL~Le~L~m~~~~i 308 (428)
+++.+++ +++++|.++++||+|||++++|++ +|+|+++.|||+|||+|++++||+.+ .+||||||||||+|+.|||
T Consensus 230 ~l~~lfg~~~~vr~rps~fPftePs~eadI~~~~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AFglgleRlaml~~~i 309 (327)
T 3pco_A 230 FLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGV 309 (327)
T ss_dssp HHHHHHCSCSEEEEEEECCTTEEEEEEEEEECSSSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHhCCCceEEEecCcCCCCCCcEEEEEEEeCCCeEEEEEEEEECHHHHHHcCCCCccceEEEEEechHHHHHHHcCC
Confidence 9999965 467899999999999999999999 78999999999999999999999865 3699999999999999999
Q ss_pred ccchhccccchhhhhhcc
Q 014218 309 PDIRLFWSSDERFTSQFS 326 (428)
Q Consensus 309 ~dirl~ws~d~rf~~qf~ 326 (428)
||||+||++|.||++||.
T Consensus 310 ~diR~~~~~d~rfl~qf~ 327 (327)
T 3pco_A 310 TDLRSFFENDLRFLKQFK 327 (327)
T ss_dssp SCGGGGTTCCHHHHHTTC
T ss_pred cHHHHHHhcChhHHhccC
Confidence 999999999999999984
No 9
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=8.7e-52 Score=433.29 Aligned_cols=274 Identities=17% Similarity=0.221 Sum_probs=193.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCC-Cccccccc-ccccc----------
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPAD-HVSRSYND-TYYVD---------- 154 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~d-hp~r~~~~-np~~~---------- 154 (428)
+.++.|..||+..++++||+.|.++ ||+|++ +|++ +..+| +|++ ||+|...| ++|++
T Consensus 57 ~~~~~G~~HPl~~~~~~IReif~~m---GF~E~~--~p~vese~~n-----~pq~gHPAR~~~D~tFyL~~P~~~~vg~~ 126 (685)
T 2odr_D 57 IKPVFGKTHPVNDTIENLRQAYLRM---GFEEYI--NPVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126 (685)
T ss_dssp CCCCCCBCCHHHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHH-----HHHHGGGHHHHHHTCEEEEBCCC------
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHC---CCEEee--CCEEeehHHh-----CCCcCCCccccCCcEEEECCCCCCccccc
Confidence 4468999999999999999999999 999996 8887 44667 4566 88876555 44443
Q ss_pred -----------------------------------------------------------------------CCcccccch
Q 014218 155 -----------------------------------------------------------------------SQTVLRCHT 163 (428)
Q Consensus 155 -----------------------------------------------------------------------e~~~LRtsL 163 (428)
+.++|||||
T Consensus 127 ~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSL 206 (685)
T 2odr_D 127 DEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHM 206 (685)
T ss_dssp ---------------------------------------------------------------CCCCCCBCCSEEECCCT
T ss_pred hhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccc
Confidence 368999999
Q ss_pred hHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHH
Q 014218 164 SAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235 (428)
Q Consensus 164 ~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~ 235 (428)
+|+++..++ .++++||+|+||++++. +.+|.+.+||++|+... ..++|+||||+|+.+++
T Consensus 207 lPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G------------~~vDF~DLKGvLE~LL~ 274 (685)
T 2odr_D 207 TSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAG------------EGVDINDGKAIAEGLLS 274 (685)
T ss_dssp HHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEEC------------TTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEEC------------CCCCHHHHHHHHHHHHH
Confidence 999999886 57999999999998776 77889999999998763 24689999999999999
Q ss_pred HhcccceeEEeecc--CCCCCCCceEEEEEC--C--eeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCc
Q 014218 236 HLFGAVEMRWVDTY--FPFTNPSYELEIFFK--E--NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIP 309 (428)
Q Consensus 236 ~L~~~~~~~~~~~~--~p~~hPg~~a~I~~~--g--~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~ 309 (428)
.|+. .+++|.++. .|++|||++|+|.++ | .|+.+.|||+|||+|++++||+.++ |+|||+||+|+|..++++
T Consensus 275 ~LGi-~~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V-~AFELgLErLamlk~gi~ 352 (685)
T 2odr_D 275 QFGF-TNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPV-MNLGLGVERLAMISGNFA 352 (685)
T ss_dssp TTTC-CCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCE-EEEEEEHHHHHHHHTTCS
T ss_pred HcCC-CeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCE-EEEEEeHHHHHHHhcCCC
Confidence 9975 257777663 689999999999885 2 5777777899999999999999986 999999999999999999
Q ss_pred cchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec-CCCC--------HHHHHHHHHhhcCCceeEEEEEEE
Q 014218 310 DIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN-ESFT--------ENNLCEVVRGVAGDLVEEVRLIDN 380 (428)
Q Consensus 310 dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~-~~~~--------~~~i~~~Ir~~~g~lle~V~l~D~ 380 (428)
|||+|| |+++|+||++.|||||+|| ++++ +++|.++|++.++ |++|+|||+
T Consensus 353 DIR~~~------------------~~dISRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~a~g--LesV~LFDV 412 (685)
T 2odr_D 353 DVREMV------------------YPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKD--LKSPCELAI 412 (685)
T ss_dssp CHHHHH------------------CGGGSCCCCCHHHHHHHEECSSCC--------------------------------
T ss_pred cccccc------------------cCCcCCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcCC--CCeEEEEEE
Confidence 999854 7889999999999999999 7777 9999999999988 999999999
Q ss_pred EcC---CCCCeeEEEEEEEecCCCCCCH
Q 014218 381 FTN---KKGMTSHCYRIAYRSMERSLTD 405 (428)
Q Consensus 381 y~g---~~gkkSl~~ri~yrs~drTLt~ 405 (428)
|+| ++||||+||+++||+.||-|=-
T Consensus 413 YeGe~I~eGKKSLAfsLtfr~~drkl~g 440 (685)
T 2odr_D 413 EKTFSFGKTKKNVKINIFEKEEGKNLLG 440 (685)
T ss_dssp ----------------------------
T ss_pred EcCCCCCCCceEEEEEEEEECCCCCcCC
Confidence 999 7999999999999999997743
No 10
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=2.8e-51 Score=430.37 Aligned_cols=272 Identities=17% Similarity=0.224 Sum_probs=194.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCC-Cccccccc-ccccc----------
Q 014218 88 MQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPAD-HVSRSYND-TYYVD---------- 154 (428)
Q Consensus 88 r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~d-hp~r~~~~-np~~~---------- 154 (428)
+.++.|..||+..++++||+.|.++ ||+|++ +|++ +.++| +|++ ||+|...| ++|++
T Consensus 57 ~~~~~G~~HPl~~~~~~IReif~~m---GF~Ev~--~p~Vese~~n-----~pq~gHPAR~~~D~tFYL~~P~~~~vg~~ 126 (701)
T 2odr_C 57 IKPVFGKTHPVNDTIENLRQAYLRM---GFEEYI--NPVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126 (701)
T ss_dssp CCCCCCBCCHHHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHH-----HHHHGGGHHHHHHTCEEEEECCC------
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHC---CCEEee--CCEEeeehhh-----CCCcCCCccccCCcEEEECCCCCCccccc
Confidence 4568999999999999999999999 999996 8887 44667 4566 88876555 54444
Q ss_pred -----------------------------------------------------------------------CCcccccch
Q 014218 155 -----------------------------------------------------------------------SQTVLRCHT 163 (428)
Q Consensus 155 -----------------------------------------------------------------------e~~~LRtsL 163 (428)
+.++|||||
T Consensus 127 ~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSL 206 (701)
T 2odr_C 127 DEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHM 206 (701)
T ss_dssp ---------------------------------------------------------------CCCCCCEEEEEEECCCT
T ss_pred hhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccc
Confidence 257999999
Q ss_pred hHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHH
Q 014218 164 SAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235 (428)
Q Consensus 164 ~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~ 235 (428)
+|+++..++ .++++||+|+||++++. +.+|.+.+||++|+... ..++|+||||+|+.+++
T Consensus 207 lPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G------------~~vDF~DLKGvLE~LL~ 274 (701)
T 2odr_C 207 TSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAG------------EGVDINDGKAIAEGLLS 274 (701)
T ss_dssp HHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEEC------------TTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEEC------------CCCCHHHHHHHHHHHHH
Confidence 999999886 57999999999998776 77889999999998763 24689999999999999
Q ss_pred HhcccceeEEeecc--CCCCCCCceEEEEEC--C--eeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCc
Q 014218 236 HLFGAVEMRWVDTY--FPFTNPSYELEIFFK--E--NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIP 309 (428)
Q Consensus 236 ~L~~~~~~~~~~~~--~p~~hPg~~a~I~~~--g--~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~ 309 (428)
.|+. .+++|.++. .|++|||++|+|.++ | .|+.+.|||+|||+|++++||+.++ |+|||+||+|+|..++++
T Consensus 275 ~LGi-~~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V-~AFELgLErLamlk~gi~ 352 (701)
T 2odr_C 275 QFGF-TNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPV-MNLGLGVERLAMISGNFA 352 (701)
T ss_dssp TTTC-CCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCE-EEEEEEHHHHHHHHTTCS
T ss_pred HcCC-CeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCE-EEEEEeHHHHHHHhcCCC
Confidence 9975 257777663 689999999999885 2 5777777899999999999999986 999999999999999999
Q ss_pred cchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEec-CCCC--------HHHHHHHHHhhcCCceeEEEEEEE
Q 014218 310 DIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWIN-ESFT--------ENNLCEVVRGVAGDLVEEVRLIDN 380 (428)
Q Consensus 310 dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~-~~~~--------~~~i~~~Ir~~~g~lle~V~l~D~ 380 (428)
|||+|| |+++|+||++.|||||+|| ++++ +++|.++|++.++ |++|+|||+
T Consensus 353 DIR~~~------------------~~dISRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~a~g--LesV~LFDV 412 (701)
T 2odr_C 353 DVREMV------------------YPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKD--LKSPCELAI 412 (701)
T ss_dssp CHHHHH------------------CGGGSCCCCCHHHHHHHBCCSSCC--------------------------------
T ss_pred cccccc------------------cCCcCCCCccccCEEEEECHHHCCcccccchHHHHHHHHHHHcCC--CCeEEEEEE
Confidence 999854 7889999999999999999 8777 9999999999988 999999999
Q ss_pred EcC---CCCCeeEEEEEEEecCCCCC
Q 014218 381 FTN---KKGMTSHCYRIAYRSMERSL 403 (428)
Q Consensus 381 y~g---~~gkkSl~~ri~yrs~drTL 403 (428)
|+| ++||||+||+++||+.|.-|
T Consensus 413 YeGe~I~eGKKSLAfsLtfr~~d~kl 438 (701)
T 2odr_C 413 EKTFSFGKTKKNVKINIFEKEEGKNL 438 (701)
T ss_dssp --------------------------
T ss_pred EcCCCCCCCceEEEEEEEEECCCcCc
Confidence 999 79999999999999988755
No 11
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=100.00 E-value=1.8e-46 Score=376.03 Aligned_cols=229 Identities=33% Similarity=0.593 Sum_probs=202.7
Q ss_pred CCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCccccccc-----c
Q 014218 77 NVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYND-----T 150 (428)
Q Consensus 77 nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~-----n 150 (428)
|||.+.. ++.++.|..||++.+.+.|+++|.++ ||+|+. +|.+ +...|||.|++|++||+|...+ |
T Consensus 85 ~i~~tlP---~~~~~~g~~hp~~~~~~~Ir~~f~~~---Gf~Ev~--~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~n 156 (350)
T 1b7y_A 85 RVDVSLP---GASLFSGGLHPITLMERELVEIFRAL---GYQAVE--GPEVESEFFNFDALNIPEHHPARDMWDTFWLTG 156 (350)
T ss_dssp -CCTTSC---CCCCCCCBCCHHHHHHHHHHHHHHTT---TCEECC--CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEEC
T ss_pred CCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHC---CCEEEE--CcchhcchhHHHhhCCCCCCccccccccEEEcC
Confidence 5554432 67789999999999999999999999 999997 5655 5577999999999999987665 5
Q ss_pred ccc----------cCCcccccchhHHHHHHHh---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcc
Q 014218 151 YYV----------DSQTVLRCHTSAHQAELLK---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLD 217 (428)
Q Consensus 151 p~~----------~e~~~LRtsL~~~ll~~l~---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~ 217 (428)
|++ ++..+|||||+|++++++. .++++||+|+|||+|+.|.+|.|+|||++|+++.
T Consensus 157 P~s~~~~~~~~~~~~~~vLRt~tsp~llr~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g----------- 225 (350)
T 1b7y_A 157 EGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVG----------- 225 (350)
T ss_dssp SSCCCBCTTSCBCCSCEEECSSSTHHHHHHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEE-----------
T ss_pred ccccccccccccccccceeeccchHHHHHHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEEC-----------
Confidence 555 4889999999999999997 5799999999999988788999999999999874
Q ss_pred cccccHHHHHHHHHHHHHHhcc-cceeEEeeccCCCCCCCceEEEEE--CCeeEEEeeeeeccHHHHHHc-------CCC
Q 014218 218 ATEYAAKDLKRCLEGLARHLFG-AVEMRWVDTYFPFTNPSYELEIFF--KENWLEVLGCGVTEQEILKRS-------GKL 287 (428)
Q Consensus 218 ~~~~~f~dLKg~Le~Ll~~L~~-~~~~~~~~~~~p~~hPg~~a~I~~--~g~~iGvlG~G~ihP~vl~~~-------gi~ 287 (428)
..++|+||||+|+.++..+++ +.++++.++++||+|||++++|++ +|+|+++.|||+|||+|++++ ||+
T Consensus 226 -~~v~f~dLKg~le~ll~~lfG~~~~~r~rps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid 304 (350)
T 1b7y_A 226 -EGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLP 304 (350)
T ss_dssp -TTCCHHHHHHHHHHHHHHHSCSSCCEEEEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCC
T ss_pred -CCCCHHHHHHHHHHHHHhhcCCCceEEEecCCCCCCCCccEEEEEEEeCCCeEEEEEEEEEeHHHHHhhccccccCCCC
Confidence 136899999999999999955 356889899999999999999998 889999999999999999999 997
Q ss_pred C-----ceEEEEEechhHHHHhhcCCccchhccccchhhhhhcc
Q 014218 288 N-----NVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFS 326 (428)
Q Consensus 288 ~-----~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~ 326 (428)
. + +||||||||||+|++|||+|||+||+.|.||++||+
T Consensus 305 ~~~~~~~-~~afglglerl~ml~~gi~DiR~~~~~d~rfl~qf~ 347 (350)
T 1b7y_A 305 PAYRGVT-GFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQFK 347 (350)
T ss_dssp CCCTTCE-EEEEEEEHHHHHHHHTTCCCGGGTTSCCHHHHGGGT
T ss_pred Cccccce-EEEEEEeHHHHHHHHcCCChHHHHhcCCHHHHHhhh
Confidence 4 5 599999999999999999999999999999999995
No 12
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=100.00 E-value=4e-45 Score=359.74 Aligned_cols=232 Identities=33% Similarity=0.571 Sum_probs=203.7
Q ss_pred CCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccC
Q 014218 76 NNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDS 155 (428)
Q Consensus 76 ~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e 155 (428)
.|||.+.. ++.++.+..||++++.++||+.|.++ ||+|+ +.+++.+...|||.+++|++||+|...++.++++
T Consensus 36 d~i~~tlp---~~~~~~g~~~~~~~~~~~iR~~l~~~---Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e 108 (294)
T 2rhq_A 36 ETIDVTLP---SRQISIGSKHPLTRTVEEIEDLFLGL---GYEIV-DGYEVEQDYYNFEALNLPKSHPARDMQDSFYITD 108 (294)
T ss_dssp TCCCTTSC---CCCCCCCCCCHHHHHHHHHHHHHHTT---TCEEC-CCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSS
T ss_pred ccCCccCC---CcccCCCCCCHHHHHHHHHHHHHHHC---CCEEE-cCcceeeehhhHHhhCCCCCccccccCCcEEEcC
Confidence 57776643 56788899999999999999999999 99999 4444445578999999999999998888888899
Q ss_pred CcccccchhHHHHHHHh-c----CCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHH
Q 014218 156 QTVLRCHTSAHQAELLK-E----HNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCL 230 (428)
Q Consensus 156 ~~~LRtsL~~~ll~~l~-~----~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~L 230 (428)
..+|||||+|+++++++ . ++++||+|+||++++.+.+|.|+|+|+++++.. ..++|+++||+|
T Consensus 109 ~~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g------------~~~df~dlKg~l 176 (294)
T 2rhq_A 109 EILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVD------------KNIKMSDLKGTL 176 (294)
T ss_dssp SEEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEE------------SSCCHHHHHHHH
T ss_pred cceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEEC------------CCCCHHHHHHHH
Confidence 99999999999999998 4 899999999999887778899999999988763 246899999999
Q ss_pred HHHHHHh-cccceeEEeeccCCCCCCCceEEEEE---CC---------eeEEEeeeeeccHHHHHHcCCCC---ceEEEE
Q 014218 231 EGLARHL-FGAVEMRWVDTYFPFTNPSYELEIFF---KE---------NWLEVLGCGVTEQEILKRSGKLN---NVAWAF 294 (428)
Q Consensus 231 e~Ll~~L-~~~~~~~~~~~~~p~~hPg~~a~I~~---~g---------~~iGvlG~G~ihP~vl~~~gi~~---~v~~af 294 (428)
+.+++.+ +...++++.++++||+|||++++|++ +| +|+.+.|||+|||+|++++||+. + +|||
T Consensus 177 e~ll~~l~g~~~~~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~vhP~Vl~~~gl~~~~~~-~~af 255 (294)
T 2rhq_A 177 ELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYS-GFAF 255 (294)
T ss_dssp HHHHHHHHCTTCCEEEEECCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTCCTTTCE-EEEE
T ss_pred HHHHHHHhCCCcEEEEecCcCCCCCCcEEEEEEEEccCCcccccccCCCCeEEEEEeeECHHHHHHcCCCCCcCe-EEEE
Confidence 9999998 54445788888899999999999998 66 57766667999999999999975 5 5999
Q ss_pred EechhHHHHhhcCCccchhccccchhhhhhccc
Q 014218 295 GLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQ 327 (428)
Q Consensus 295 EL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~ 327 (428)
|||||+|+|++++|||||+||++|.||++||+.
T Consensus 256 el~le~L~m~~~~i~diR~~~~~d~rfl~qf~~ 288 (294)
T 2rhq_A 256 GMGPDRIAMLKYGIEDIRYFYTNDVRFLEQFKA 288 (294)
T ss_dssp EECHHHHHHHHHTCCCTTHHHHCCHHHHTTCCS
T ss_pred EEeHHHHHHHHcCCCHHHHHhcCCHHHHHHhCc
Confidence 999999999999999999999999999999963
No 13
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=364.44 Aligned_cols=231 Identities=26% Similarity=0.413 Sum_probs=206.0
Q ss_pred CCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccC-
Q 014218 77 NVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDS- 155 (428)
Q Consensus 77 nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e- 155 (428)
.+.++.++..|+..+.|..||+++++++|+++|.++ ||+|+.+.+++.+..+|||.|++|+|||+|...|++|+++
T Consensus 206 ~f~~y~~~~~g~~~~~G~lHPl~~v~~~Ir~if~~m---GF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P 282 (508)
T 3l4g_A 206 PFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEM---GFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDP 282 (508)
T ss_dssp CCCCCCSSSCCCCCCCCBCCHHHHHHHHHHHHHHHT---TCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTT
T ss_pred CceecccCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---cCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCc
Confidence 567888888999999999999999999999999999 9999875445667789999999999999999888766653
Q ss_pred --------------------------------------CcccccchhHHHHHHHh--------cCCeEEEEeeEEecCCC
Q 014218 156 --------------------------------------QTVLRCHTSAHQAELLK--------EHNHFLVTGDVYRRDSI 189 (428)
Q Consensus 156 --------------------------------------~~~LRtsL~~~ll~~l~--------~~~~~FEiG~Vyr~d~~ 189 (428)
..+|||||+|++++++. .++++||+|+|||+++.
T Consensus 283 ~~~~~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~ 362 (508)
T 3l4g_A 283 AEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL 362 (508)
T ss_dssp CBCSCCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC
T ss_pred cccccccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC
Confidence 68999999999999883 47899999999999999
Q ss_pred CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECC--ee
Q 014218 190 DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKE--NW 267 (428)
Q Consensus 190 d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g--~~ 267 (428)
|.+|+|.|||++|+.+. ..++|+||||+|+.+++.++. .++++.++++||+|||.++.++++| +|
T Consensus 363 DatHlpeFhQlegl~~~------------~~v~f~dLKg~Le~~l~~lG~-~~~rfrps~fPftePS~ev~i~~~G~~~W 429 (508)
T 3l4g_A 363 DATHLAEFHQIEGVVAD------------HGLTLGHLMGVLREFFTKLGI-TQLRFKPAYNPYTEPSMEVFSYHQGLKKW 429 (508)
T ss_dssp CSSSCSEEEEEEEEEEE------------ESCCHHHHHHHHHHHHHTTTC-CCCEEEECCCTTCSSEEEEEECCSTTSSC
T ss_pred CCCcCCeEEEEEEEEEC------------CCCCHHHHHHHHHHHHHHcCC-cceEeeccCCCCCCCeEEEEEEECCccce
Confidence 99999999999998652 246899999999999999964 3678999999999999999998877 79
Q ss_pred EEEeeeeeccHHHHHHcCCCC--ceEEEEEechhHHHHhhcCCccchhcccc--chhhhhh
Q 014218 268 LEVLGCGVTEQEILKRSGKLN--NVAWAFGLGLERLAMVLFDIPDIRLFWSS--DERFTSQ 324 (428)
Q Consensus 268 iGvlG~G~ihP~vl~~~gi~~--~v~~afEL~Le~L~m~~~~i~dirl~ws~--d~rf~~q 324 (428)
+++.|||+|||+|++++||+. + +|||||+||||+|+.|||+|||+|++. |..|+..
T Consensus 430 ~EIGg~G~vhP~VL~~~Gipe~~~-v~AfgLgLeRLaml~~gi~diR~l~~~~~dl~~~~~ 489 (508)
T 3l4g_A 430 VEVGNSGVFRPEMLLPMGLPENVS-VIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYD 489 (508)
T ss_dssp EEEEEEECCCHHHHGGGTCCTTEE-EEEEEEESHHHHTTTTTCSCGGGTSSTTCCHHHHHH
T ss_pred EEEEeeeeEcHHHHHHCCCCCCce-EEEEEecHHHHHHHHcCCcHHHHHhcCCcCHHHHhh
Confidence 999999999999999999963 5 599999999999999999999999987 7788763
No 14
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00 E-value=7.3e-40 Score=341.33 Aligned_cols=273 Identities=19% Similarity=0.205 Sum_probs=214.2
Q ss_pred CCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccC-chhh---h--------h-hcCCC---
Q 014218 76 NNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVS-VKQN---F--------D-DVLVP--- 139 (428)
Q Consensus 76 ~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs-~~~n---f--------d-~L~~p--- 139 (428)
+|+|+.+ ..+.|..||+..++++|++.|.++ ||+|++ +|.+. .++| | | .+.++
T Consensus 33 d~i~~~~------~~~~g~~hp~~~~~~~Ir~~l~~l---GF~Ev~--~~s~~s~~~n~p~~~Hpar~~~Dr~fyl~~~~ 101 (534)
T 2du3_A 33 NELYPRV------GFSFGKEHPLFATIQRLREAYLSI---GFSEVV--NPLIVEDVHVKKQFGREALAVLDRCFYLATLP 101 (534)
T ss_dssp GGSTTSS------CCCCCCCCHHHHHHHHHHHHHHHT---TCEECC--CCCEEETHHHHHHHGGGHHHHHTTSCEEEECC
T ss_pred CCCCCcc------CCCCCCCCHHHHHHHHHHHHHHHC---CCEEEe--CceEeChhhcccccccchhhhccceeeccCcc
Confidence 4666654 468899999999999999999999 999986 77654 3442 2 3 22111
Q ss_pred ----------------------------------------CCCccc-------------cccccccccC---------Cc
Q 014218 140 ----------------------------------------ADHVSR-------------SYNDTYYVDS---------QT 157 (428)
Q Consensus 140 ----------------------------------------~dhp~r-------------~~~~np~~~e---------~~ 157 (428)
.+...+ .+..||++++ ..
T Consensus 102 ~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPis~e~~~~~~~~~~s 181 (534)
T 2du3_A 102 KPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTL 181 (534)
T ss_dssp CCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCTTTTTCCCEEEEE
T ss_pred cccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCCChhhcccccccccc
Confidence 011100 2225788888 79
Q ss_pred ccccchhHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHH
Q 014218 158 VLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRC 229 (428)
Q Consensus 158 ~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~ 229 (428)
+|||||+|+++++++ .++++||+|+||++++. +.+|++.+||+.|+... ...+|+|+||+
T Consensus 182 vLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G------------~~vdf~dLKgi 249 (534)
T 2du3_A 182 TLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVD------------EELSVDDGKAV 249 (534)
T ss_dssp EECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEEC------------SSCCHHHHHHH
T ss_pred ccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEEC------------CCCCHHHHHHH
Confidence 999999999999986 46899999999998876 77899999999998763 23589999999
Q ss_pred HHHHHHHhcccceeEEeeccCC--CCCCCceEEEEEC------------CeeEEEeeeeeccHHHHHHcCCCCceEEEEE
Q 014218 230 LEGLARHLFGAVEMRWVDTYFP--FTNPSYELEIFFK------------ENWLEVLGCGVTEQEILKRSGKLNNVAWAFG 295 (428)
Q Consensus 230 Le~Ll~~L~~~~~~~~~~~~~p--~~hPg~~a~I~~~------------g~~iGvlG~G~ihP~vl~~~gi~~~v~~afE 295 (428)
++.++..|+.. +++|.++..| ++|||++++|++. +.|+++.|||++||++++++|++.++ |+||
T Consensus 250 lE~LL~~LGi~-~~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~~~v-~afe 327 (534)
T 2du3_A 250 AEALLRQFGFE-NFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPYPV-MNLG 327 (534)
T ss_dssp HHHHHGGGTCC-EEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCSCE-EEEE
T ss_pred HHHHHHHcCCC-eEEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCCCcE-EEEE
Confidence 99999999753 5778777667 5999999999872 35888888899999999999999885 9999
Q ss_pred echhHHHHhhcCCccchhccccch--hhhhhcccCCCCccCCCCCCCCCcce--eeeEEecCCCCHHHHHHHHHhhcCCc
Q 014218 296 LGLERLAMVLFDIPDIRLFWSSDE--RFTSQFSQGQLGIKFKPFSKYPPCYK--DMSFWINESFTENNLCEVVRGVAGDL 371 (428)
Q Consensus 296 L~Le~L~m~~~~i~dirl~ws~d~--rf~~qf~~~~~~~~fkp~SkyP~~~R--DiSf~v~~~~~~~~i~~~Ir~~~g~l 371 (428)
||||||+|++++|||||+||+.|. ||++||..- ..+.|+|++|.... +| +.+|++.+.+.+.
T Consensus 328 LgLErLaMl~~gi~DIR~~~~~d~~~rfl~qf~~i---~~~~~~~~~P~~~~~~~~---------~~~i~~~~~~~~~-- 393 (534)
T 2du3_A 328 LGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDI---AREIKVKEVPQTAVGLKI---------AQSIVETAEKHAS-- 393 (534)
T ss_dssp EEHHHHHHHHTTCSCHHHHHCTTTTTCCCCCHHHH---HHHCEESSCCSSHHHHHH---------HHHHHHHHHHSSS--
T ss_pred ecHHHHHHhhcCCchhhhhhcccccHhHHhhhhhh---hcCccHhhCCCchHHHHH---------HHHHHHHHHHhCC--
Confidence 999999999999999999999999 999998643 45788888885431 11 3455656666554
Q ss_pred eeEEEEEEEEcC-CCCC
Q 014218 372 VEEVRLIDNFTN-KKGM 387 (428)
Q Consensus 372 le~V~l~D~y~g-~~gk 387 (428)
..++.+||+|+| .-||
T Consensus 394 ~~~~~~f~~~~g~~~~~ 410 (534)
T 2du3_A 394 EPSPCSFLAFEGEMMGR 410 (534)
T ss_dssp CBSSEEEEEEEEESSSS
T ss_pred CCCCcEEEEEecccCCc
Confidence 459999999999 5564
No 15
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=99.98 E-value=6.8e-32 Score=253.78 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCC-CCccccccccccccCCcccccchhHHHHHHHh---
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPA-DHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~-dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~--- 172 (428)
...+++++|++.|.++ ||+|++ ++.+++.+.|+.++.++ .+++++ .||+++++++|||||+|+++++++
T Consensus 5 ~~~~~~~~ir~~l~~~---G~~Evi--tysf~~~~~~~~~~~~~~~~~v~l--~NPls~e~~vmRtsLlpgLL~~~~~N~ 77 (213)
T 3ig2_A 5 KSNKLQNLVAEQLVGC---GFNEIL--NNSLTRAAYYDGLESYPSKNLVML--LNPLSADLNCMRQTLLFGGLESIAHNA 77 (213)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECC--CCSEECGGGGTTCSSSCGGGCEEB--SSGGGCSCCEECSCSHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHC---CCeEEe--ccccCCHHHHHhhcccCcCCeEEE--eCCcchhHHHHHHHhHHHHHHHHHHHh
Confidence 4568999999999999 999997 66665566899888754 345666 999999999999999999999996
Q ss_pred ----cCCeEEEEeeEEecCCCCC-CCCc----ceEEEEEEEEE---ecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 ----EHNHFLVTGDVYRRDSIDS-THYP----VFHQMEGVSIF---YPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d~-~~~p----~f~q~~g~~~~---~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.++++||+|+||++++.+. ++.| .+.++.++.+. .+..|..+. ..+||+++||+||.++..++++
T Consensus 78 ~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~---~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 78 NRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHAD---ENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp -----CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC-------CHHHHHHHHHHHHHHHHHTTBC
T ss_pred cCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCC---CCcCHHHHHHHHHHHHHHhCCC
Confidence 4689999999999876321 1111 23334444332 466787643 5689999999999999999875
Q ss_pred c-eeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 241 V-EMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 241 ~-~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
. .+++.+..+|++|||++++ +++|+.||++ |+|||+|++++||+.++ ++|||+|+.|
T Consensus 155 ~~~~~~~~~~~~~~hPgr~a~-~~~g~~iG~~--G~lhP~v~~~~~l~~~v-~~~Eldl~~l 212 (213)
T 3ig2_A 155 LHSLVVGNLSDDIYSTALTVN-TKGGKRLATF--GVVTKKMLKAFDVDNEV-YYADLNWKEL 212 (213)
T ss_dssp GGGCEEEEECSSSEEEEEEEE-CTTCCEEEEE--EEECHHHHHHTTCCEEE-EEEEEETGGG
T ss_pred ccceEEeeccCCCCCCCeEEE-eECCcEEEEE--eEECHHHHHHcCcCCCe-EEEEEEhHHh
Confidence 2 3677777889999999999 8899999999 99999999999999996 8999999975
No 16
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=99.98 E-value=1.1e-31 Score=252.37 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCC-CCccccccccccccCCcccccchhHHHHHHHh---
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPA-DHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~-dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~--- 172 (428)
+.++++++|++.|.++ ||+|++ ++.+++.+.++.++.++ +.++++ .||+++++++|||||+|+++++++
T Consensus 5 ~~~~~~~~ir~~L~~~---G~~Evi--tysf~s~~~~~~~~~~~~~~~v~l--~NPls~e~~vmRtsLlpgLL~~~~~N~ 77 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGA---GFNEIL--NNSLTAGSYYEGLKSHPREMAVEL--MNPLSQELNCMRQTLLFGGLETLSHNL 77 (213)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECC--CCSEEEGGGGTTCSSSCGGGCCBC--SSBSCSSEEEECSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC---CCceee--eccCCCHHHHhhhcccCcCCeEEe--cCCccHHHHHHHHHhHHHHHHHHHHHH
Confidence 4578999999999999 999997 66665677899887644 345666 999999999999999999999996
Q ss_pred ----cCCeEEEEeeEEecCCCCCC-CC----cceEEEEEEEEE---ecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 ----EHNHFLVTGDVYRRDSIDST-HY----PVFHQMEGVSIF---YPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d~~-~~----p~f~q~~g~~~~---~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.++++||+|+||++++.+.. .. +.+..+.++.+. .+..|..+. ..+||+++||+||.++..+++.
T Consensus 78 ~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~---~~~df~d~Kg~ve~ll~~lgi~ 154 (213)
T 3ica_A 78 RRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPE---EPTSVFELKAVVEQVLCRVGIE 154 (213)
T ss_dssp TTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CC---CBCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCC---CCcCHHHHHHHHHHHHHHhCCC
Confidence 35899999999998653210 11 133344444443 356787643 5789999999999999999875
Q ss_pred c-eeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 241 V-EMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 241 ~-~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
. .+++.+..+|++|||++++ +++|+.||++ |+|||+|++++||+.++ ++|||+||.|
T Consensus 155 ~~~~~~~~~~~~~~hpgr~a~-~~~g~~iG~~--G~lhP~v~~~~~l~~~v-~~~Eldl~~l 212 (213)
T 3ica_A 155 TGAYTLKTADNDLYASAMEVK-TRSGKLLGTF--GTVSTELIKRFEIEQPV-YFAELLWDAL 212 (213)
T ss_dssp GGGEEEEECCCTTEEEEEEEE-ETTCCEEEEE--EEECHHHHHHTTCCSCE-EEEEEEHHHH
T ss_pred ccceEEeeccCCCCCCCeEEE-eECCcEEEEE--eEECHHHHHHcCCCCCe-EEEEEEhHHh
Confidence 2 3677788889999999998 8899999999 99999999999999996 8999999976
No 17
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.97 E-value=2.9e-30 Score=253.45 Aligned_cols=201 Identities=18% Similarity=0.202 Sum_probs=166.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHH
Q 014218 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAH 166 (428)
Q Consensus 87 ~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ 166 (428)
...+..|..||.+.+.+.|+++|.+. ||+|+. +|+++..++++.++.+.++|.+. +.++.++..+||++++|+
T Consensus 68 ~~i~~~g~~~~~~~i~~~ir~~l~~~---Gf~EV~--Tp~l~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~LR~slsp~ 140 (290)
T 3qtc_A 68 QQIYAEERENYLGKLEREITRFFVDR---GFLEIK--SPILIPLEYIERMGIDNDTELSK--QIFRVDKNFCLRPMLTPN 140 (290)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHT---TCEEEC--CCSEEETHHHHHTTCCTTSSGGG--GCCEETTTEEECSCSHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHHHC---CCEEEE--CCceeeHHHHHhcCCCcCCchhh--hheeeCCCeeEcccChHH
Confidence 34567789999999999999999998 999996 88887777899999988887754 455667999999999999
Q ss_pred HHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 167 QAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 167 ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
+++.+. .+.++||+|+|||.+..+..|.++|+|+++...+. ..+|+++|++++.+++.+++
T Consensus 141 L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~------------~~~f~elkg~le~ll~~lGl 208 (290)
T 3qtc_A 141 LYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGS------------GCTRENLESIITDFLNHLGI 208 (290)
T ss_dssp HHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEEST------------TCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcC------------ChHHHHHHHHHHHHHHHcCC
Confidence 998774 46899999999998776677899999888775531 23689999999999999986
Q ss_pred cceeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHH-HHcCCCCceEEEEEechhHHHHhhcCCccchhc
Q 014218 240 AVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEIL-KRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLF 314 (428)
Q Consensus 240 ~~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl-~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ 314 (428)
+ +++. ..|++|||++|+|+++|+.| |||+|||+|+ +++||+.++ ++||||||+|+|+.++|||||+|
T Consensus 209 ~--~~~~--~~~~~hpgr~a~i~~~~~~i---G~G~lhP~vl~~~~~i~~~v-~~~el~le~l~~~~~~~~dir~~ 276 (290)
T 3qtc_A 209 D--FKIV--GDSCMVFGDTLDVMHGDLEL---SSALVGPIPLDREWGIDKPW-IGAGFGLERLLKVKHDFKNIKRA 276 (290)
T ss_dssp C--CEEE--C------CEEEEEEETTEEE---EEEEESCCGGGGGGTCCSCE-EEEEEEHHHHHHHHHTCSSGGGG
T ss_pred C--cEEe--CCCccccCCcccEeeCCEEE---EEEEecHHHHHHhCCCCCce-EEEEECHHHHHHHHcCCcHHHHH
Confidence 4 4444 46889999999999998844 5689999999 899999996 89999999999999999999986
No 18
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=276.19 Aligned_cols=192 Identities=13% Similarity=0.047 Sum_probs=161.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCcc-CchhhhhhcCCCCCCccccccccccccCCcccccchhHHHH
Q 014218 90 LHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIV-SVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQA 168 (428)
Q Consensus 90 l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvv-s~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll 168 (428)
...+..||.++++++||+.|.++ ||+|++ ++.+ +.+++|+.|+++.+|.-.+...||+++++++|||||+|+++
T Consensus 385 ~~~g~~~~~~~~~~~ir~~l~~~---Gf~Evi--tysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL 459 (589)
T 3l4g_B 385 YTIANQFPLNKLTELLRHDMAAA---GFTEAL--TFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLL 459 (589)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHT---TCEECC--CCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHC---CCEEEe--cCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHH
Confidence 34568899999999999999999 999997 6654 55668999999887632333499999999999999999999
Q ss_pred HHHh------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccc-
Q 014218 169 ELLK------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAV- 241 (428)
Q Consensus 169 ~~l~------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~- 241 (428)
++++ .++++||+|+||++++.+.+|.+.++++.|+... ...+|+++||.++.++..++.+.
T Consensus 460 ~~l~~N~~~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g------------~~~~f~~lkg~le~ll~~lg~~~~ 527 (589)
T 3l4g_B 460 KTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYN------------KNPGFEIIHGLLDRIMQLLDVPPG 527 (589)
T ss_dssp HHHHHTTTSCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEES------------SSCCHHHHHHHHHHHHHHTTCCBS
T ss_pred HHHHHHhcCCCceEEEEeeeEEecCCccccCCccccEEEEEEEC------------CCCCHHHHHHHHHHHHHHcCCCcc
Confidence 9996 3799999999999987655566666666665331 13479999999999999998753
Q ss_pred ----eeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 242 ----EMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 242 ----~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
.+++.+..+|++||||+|+|+++|+.||++ |+|||+|++++||+.++ ++|||+|+.|
T Consensus 528 ~~~~~~~~~~~~~~~~hPGr~A~I~~~g~~iG~~--GelHP~v~~~~~l~~~v-~~~El~l~~l 588 (589)
T 3l4g_B 528 EDKGGYVIKASEGPAFFPGRCAEIFARGQSVGKL--GVLHPDVITKFELTMPC-SSLEINIGPF 588 (589)
T ss_dssp TTTTSEEEEECCCTTEEEEEEEEEEETTEEEEEE--EEECHHHHHHTTCCSCE-EEEEEECGGG
T ss_pred ccccceEEeccCCCCccCCCEEEEEECCeEEEEE--EEECHHHHHHcCCCCCe-EEEEEEhHHh
Confidence 367778888999999999999999999999 99999999999999996 8999999975
No 19
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.95 E-value=1.3e-26 Score=227.16 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=166.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHH
Q 014218 87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAH 166 (428)
Q Consensus 87 ~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ 166 (428)
....+.+..||++.+.+.|++.|.+. ||+|+. +|.++..+.++..+.+++|... ...||..++ .+||++++|+
T Consensus 62 ~~~~~~g~~h~~~~l~~~ir~~~~~~---Gf~EV~--tP~Le~~~l~~~~g~~~~~~m~-~~~npl~e~-~~LRp~l~p~ 134 (288)
T 3dsq_A 62 EQLRTVKHRPALLELEEKLAKALHQQ---GFVQVV--TPTIITKSALAKMTIGEDHPLF-SQVFWLDGK-KCLRPMLAPN 134 (288)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHTT---TCEECC--CCSEEEHHHHHTTSSCC--CCT-TTSCEEETT-EEECSCSHHH
T ss_pred hhhhcCCCcCHHHHHHHHHHHHHHHC---CCEEEE--CCeeecHHHHhhcCCCcccccE-Eeecccccc-hhhhhcChHH
Confidence 44577899999999999999999998 999996 8988777778877776654221 225787755 5999999999
Q ss_pred HHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 167 QAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 167 ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
++.+++ .++++||+|+|||++..+.+|++.|+|+++..+..+ ...+|+++|++++.+++.|++
T Consensus 135 l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~----------~~~~f~elkg~le~ll~~LGl 204 (288)
T 3dsq_A 135 LYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTP----------LEERHQRLEDMARWVLEAAGI 204 (288)
T ss_dssp HHHHHHHHTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCC----------GGGHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCC----------chhhHHHHHHHHHHHHHHcCC
Confidence 997654 578999999999998888889999999988766321 245799999999999999986
Q ss_pred cceeEEeeccCCCCCCCceEEEEECCeeEEEeeeeeccHHHH-HHcCCCCceEEEEEechhHHHHhhcCCccchhcc
Q 014218 240 AVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEIL-KRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFW 315 (428)
Q Consensus 240 ~~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~ihP~vl-~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~w 315 (428)
. .+++.+.. ..++|+++++..+|. ++.||| +||.++ +++||+.++ ++||||||||+|++++|+|||.+.
T Consensus 205 ~-~~~~~~~s--~e~~~~~~~l~~~~~--eig~~G-v~p~vl~~~~gi~~~~-~gfglglerl~m~~~g~~~iR~~~ 274 (288)
T 3dsq_A 205 R-EFELVTES--SVVYGDTVDVMKGDL--ELASGA-MGPHFLDEKWEIFDPW-VGLGFGLERLLMIREGTQHVQSMA 274 (288)
T ss_dssp C-CCEEEECC--CCSSCCCEEEEETTE--EEEEEE-EESCTTTTTTTCCSCE-EEEEEEHHHHHHHHHTCSCGGGGS
T ss_pred C-CcEEecCC--cceEEEEEEEEeCCE--EEEEEE-ecHHHHHHhcCCCCCe-EEEEECHHHHHHHHcCCchhhcCC
Confidence 3 35555433 347899999988765 455569 999999 999998885 789999999999999999999863
No 20
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.52 E-value=8.4e-13 Score=129.44 Aligned_cols=188 Identities=20% Similarity=0.210 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCc-----cccccccccccCCcccccchhHHHHHHHh
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHV-----SRSYNDTYYVDSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp-----~r~~~~np~~~e~~~LRtsL~~~ll~~l~ 172 (428)
.+.+.+.||++|... ||.|+. +|+++.. +| |.+|| ++.-..+ +......||++---.+...+.
T Consensus 18 rs~i~~~ir~~f~~~---GF~EVe--TP~l~~~--~~----~~~~~~~~e~a~~f~~~-~~~~~~~L~~Spe~~~~~l~~ 85 (294)
T 1nnh_A 18 QTKILEYMTDFFVKE---GFKWLL--PVIISPI--TD----PLWPDPAGEGMEPAEVE-IYGVKMRLTHSMILHKQLAIA 85 (294)
T ss_dssp HHHHHHHHHHHHHHT---TCEEEC--CCCEESC--CC----CCCSCTTCCCCCCCEEE-ETTEEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC---CCEEEE--CCEEEEc--cc----hhccCCCCCcceeEEEE-cCCCCEEeccChHHHHHHHhh
Confidence 357888999999988 999997 8988543 23 33455 3321222 334556888766555444444
Q ss_pred -cCCeEEEEeeEEecCC--CC-CCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccc-------
Q 014218 173 -EHNHFLVTGDVYRRDS--ID-STHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAV------- 241 (428)
Q Consensus 173 -~~~~~FEiG~Vyr~d~--~d-~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~------- 241 (428)
+..++|++|+|||.+. .+ ..|.|+|+|+++-..+ .++.+++..+|.++..++..+
T Consensus 86 ~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~--------------~~~~~l~~~~e~l~~~l~~~~~~~~~~~ 151 (294)
T 1nnh_A 86 MGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER--------------AKMEDIMRLIERLVYGLFRKAEEWTGRE 151 (294)
T ss_dssp TTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEET--------------CCHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCccceEEEEccEeCCCCCCCCCccccceeEEEEEecC--------------CCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 6899999999999887 65 5899999999887652 246789999998888776311
Q ss_pred ------------------------------eeEEeecc-CCCCCCC-----ceEEEEEC-CeeEEEeeeee--ccHHHH-
Q 014218 242 ------------------------------EMRWVDTY-FPFTNPS-----YELEIFFK-ENWLEVLGCGV--TEQEIL- 281 (428)
Q Consensus 242 ------------------------------~~~~~~~~-~p~~hPg-----~~a~I~~~-g~~iGvlG~G~--ihP~vl- 281 (428)
+..|+..+ .||+.|. ++.+++++ | |.|++|+|. .+|+++
T Consensus 152 i~~~~~~~r~~y~ea~~~~g~~~er~~~~~~P~~v~~~P~pf~~~~d~~~~~~~Dl~~~~g-~~Ei~~g~~r~~d~~~l~ 230 (294)
T 1nnh_A 152 FPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYG-YGEVASGGEREWEYEKIV 230 (294)
T ss_dssp CCCCSSCEEEEHHHHHHHTSSHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTT-TEEEEEEEEBCCCHHHHH
T ss_pred cccCCCceEeEHHHHHHHhCChHhhhhhcCCCEEEEcCChHHhCCCCCCeEEEEEEEECCC-cEEEecCeeecCCHHHHH
Confidence 11233222 6788886 88999998 6 568888765 777775
Q ss_pred ---HHc----------------CCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 282 ---KRS----------------GKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 282 ---~~~----------------gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+.. |.+.| ...|+||+|||+|++.++++||.
T Consensus 231 ~~~~~~g~~~~~~~~~l~~l~~G~p~P-~~G~glGieRL~mll~g~~~Ird 280 (294)
T 1nnh_A 231 AKIRKAGLNEDSFRPYLEIAKAGKLKP-SAGAGIGVERLVRFIVGAKHIAE 280 (294)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHTTCCCC-EEEEEEEHHHHHHHHHTCSSGGG
T ss_pred HHHHHcCCCccCHHHHHHHHhcCCCCC-ceEEEEcHHHHHHHHhCCCCHHH
Confidence 333 45435 35789999999999999999974
No 21
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.75 E-value=2.1e-07 Score=95.79 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCC
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN 175 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~ 175 (428)
+..+.+.+.||++|.+. ||.|+. +|+++.. ..|+.+..-..++......||+|---++...+.+..
T Consensus 136 ~~rs~i~~~ir~~f~~~---gF~eVe--TP~l~~~---------~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 136 KVKETLIMAAREWLLKD---GWHEVF--PPILVTG---------AVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEECC--CCSEESC---------CSSCGGGCCEEEETTEEEEECSCSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHC---CCEEEe--CcEEEee---------cCCCCceeEEEeecCCcEEeccChHHHHHHHhcCcc
Confidence 45567888999999998 999997 8988532 234444433444556677899655444333333678
Q ss_pred eEEEEeeEEecCCCCC-CCCcceEEEEEEEE
Q 014218 176 HFLVTGDVYRRDSIDS-THYPVFHQMEGVSI 205 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d~-~~~p~f~q~~g~~~ 205 (428)
++|++|+|||.++.+. .|.|+|+|++.-..
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~ 232 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAA 232 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEE
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEc
Confidence 9999999999887765 69999999988765
No 22
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.68 E-value=5.1e-07 Score=92.65 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCC
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN 175 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~ 175 (428)
+..+.+.+.||++|.+. ||.|+. +|+++.. ..++.+..-..++......||+|---++...+.+..
T Consensus 135 ~~rs~i~~~ir~ff~~~---gF~eV~--TP~l~~~---------~~e~~~~~f~~~~~~~~~~L~~Spql~~~~~~~g~~ 200 (429)
T 1wyd_A 135 KIQSLALKAFRETLYKE---GFIEIF--TPKIIAS---------ATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVE 200 (429)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEECC--CCSEESS---------CSSTTCCCCEEEETTEEEEECSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhC---CCEEEE--CCEEEee---------CCCCCceeEEEecCCceEEecCCcHHHHHHHHhCcC
Confidence 44566778899999998 999997 8988532 123333222334455567888666655333333678
Q ss_pred eEEEEeeEEecCCCCC-CCCcceEEEEEEEE
Q 014218 176 HFLVTGDVYRRDSIDS-THYPVFHQMEGVSI 205 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d~-~~~p~f~q~~g~~~ 205 (428)
++|++|+|||.++.+. .|.|+|+|++.-..
T Consensus 201 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~ 231 (429)
T 1wyd_A 201 RVFEVAPAWRAEESDTPFHLAEFISMDVEMA 231 (429)
T ss_dssp EEEEEEEEECCCCCCSSSCCSEEEEEEEEEE
T ss_pred ceEEEcccccccCCccccccceeeEeeeeec
Confidence 9999999999888764 69999999988765
No 23
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.54 E-value=1.3e-06 Score=89.46 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCC
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN 175 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~ 175 (428)
+..+.+.+.||++|... ||.|+. +|+++... .++.+..-..++......||+|---++..++.+..
T Consensus 126 ~~rs~i~~~ir~~f~~~---gF~EV~--TPil~~~~---------~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~~g~~ 191 (422)
T 1n9w_A 126 KVQAALVRGFRRYLDRQ---DFTEIF--TPKVVRAG---------AEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFE 191 (422)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEECC--CC-------------------------------------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHC---CCEEEE--CCEEEEeC---------CCCCceeEEEeeCCCcEEeeeCHHHHHHHHhhCCC
Confidence 34556778899999998 999997 89886321 12222211223444566788655444322223557
Q ss_pred eEEEEeeEEecCCCCC-CCCcceEEEEEEEEE
Q 014218 176 HFLVTGDVYRRDSIDS-THYPVFHQMEGVSIF 206 (428)
Q Consensus 176 ~~FEiG~Vyr~d~~d~-~~~p~f~q~~g~~~~ 206 (428)
++|++|+|||.++.+. .|.|+|+|++.-..+
T Consensus 192 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 223 (422)
T 1n9w_A 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223 (422)
T ss_dssp EEEEEEEC-------------CCEEEEEEEES
T ss_pred ceeEEeCceECCCCCCCcccceeEEeeeeeeC
Confidence 9999999999887764 699999999887654
No 24
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.34 E-value=2.8e-05 Score=81.09 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
..+.+.||++|... ||.|+. +|+++... -|- .-.|-.. ...+......||++---++-.++. +-.++
T Consensus 178 s~i~~~iR~ff~~~---gF~EVe--TPiL~~~~----~Ga-~a~~F~~--~~~~~~~~~yLr~SpqLylk~l~v~G~~rV 245 (493)
T 3a74_A 178 SLIIQSMRRYLDSH---GYLEVE--TPMMHAVA----GGA-AARPFIT--HHNALDMTLYMRIAIELHLKRLIVGGLEKV 245 (493)
T ss_dssp HHHHHHHHHHHHHT---TCEECC--CCSEESSC----CSS-SSCCCEE--EETTTTEEEEECSCSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhC---CeEEEE--CCeEEecC----CCC-cccceEe--cccCCCceeEEecCHHHHHHHHhhcccCce
Confidence 35566788899888 999997 89885321 010 0011111 111234556799776655544444 77899
Q ss_pred EEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 178 LVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 178 FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
|++|++||.++.+..|.|+|.|++.-..
T Consensus 246 yeig~~FR~E~~~~rH~pEFT~lE~e~a 273 (493)
T 3a74_A 246 YEIGRVFRNEGISTRHNPEFTMLELYEA 273 (493)
T ss_dssp EEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred EEECccccCCCCCcccCCceeEEEEEec
Confidence 9999999998888899999999887654
No 25
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.08 E-value=0.00035 Score=74.13 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCc--hhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSV--KQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~--~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
.+...||++|... ||.|+. +|+++. .+.- .+-...+ +.+-.++..||.|---++.-++. +-.+
T Consensus 149 ~i~~~iR~fl~~~---gF~EVe--TPiL~~s~~eGA--------r~F~v~~-~~~~~~~y~L~qSPQl~kq~Lmv~G~~r 214 (580)
T 1l0w_A 149 RVIKAIWDFLDRE---GFVQVE--TPFLTKSTPEGA--------RDFLVPY-RHEPGLFYALPQSPQLFKQMLMVAGLDR 214 (580)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSSBCCCSSSS--------CCCEEEC-TTSTTEEEECCSCSHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhC---CcEEEe--CCEEecCCCCCC--------CCccccc-cccCCceeECccCHHHHHHHHHHhccCC
Confidence 4557789999988 999997 898863 1110 1111100 11111223488766555554444 6789
Q ss_pred EEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 177 FLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
+|+||+|||..+.+.+|-|+|.|++.-..
T Consensus 215 vfqI~~~FR~E~~~~~r~pEFT~lE~e~a 243 (580)
T 1l0w_A 215 YFQIARCFRDEDLRADRQPDFTQLDLEMS 243 (580)
T ss_dssp EEEEEEEECCCCCCSSCCSEEEEEEEEEE
T ss_pred eEEEeceeeCCCCCCCcCCCccceeeeec
Confidence 99999999998888889999998886554
No 26
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.54 E-value=0.00053 Score=68.27 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-----cCCcccccchhHHHHHHHh-
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-----DSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-----~e~~~LRtsL~~~ll~~l~- 172 (428)
..+.+.||++|... ||.|+. +|+++....-+. ...|.+. .++. .....||+|---++..++.
T Consensus 40 s~i~~~iR~ff~~~---gF~EVe--TPiL~~~~~~~a----~~~~F~~---~~~~~~~~~~~~~yL~~Spql~~k~l~~~ 107 (345)
T 3a5y_A 40 AAIMAEIRRFFADR---GVLEVE--TPCMSQATVTDI----HLVPFET---RFVGPGHSQGMNLWLMTSPEYHMKRLLVA 107 (345)
T ss_dssp HHHHHHHHHHHHHT---TCEECC--CCSEESSCCCCT----TCCCCEE---EECCSTTSCCEEEEECSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC---CCEEEE--CCEEEecCCCCC----ccceEEE---EecCcccccCCCEeecCCHHHHHHHHHHc
Confidence 46778899999998 999997 898863210000 0012222 1111 1334688776555554444
Q ss_pred cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 173 EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
+-.++|+||+|||.++.+..|.|+|.|++.-..+ .++.++-..+|.|+..+
T Consensus 108 g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af--------------~d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 108 GCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH--------------YDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp TCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEET--------------CCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcceeCCCCcccccchhheeeeeeeC--------------CCHHHHHHHHHHHHHHH
Confidence 6789999999999988888999999988765432 24555666666555443
No 27
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.43 E-value=0.00074 Score=70.48 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+.+.||++|... ||.|+. +|+++... -| ..-.|-... .| +......||+|---++-.++. +-.++|
T Consensus 188 ~i~~~iR~f~~~~---gFlEVe--TPiL~~~~----~G-a~ar~F~t~-~~-~~~~~~yL~~SpqLylk~L~v~G~~rVy 255 (504)
T 1e1o_A 188 KILAAIRQFMVAR---GFMEVE--TPMMQVIP----GG-ASARPFITH-HN-ALDLDMYLRIAPELYLKRLVVGGFERVF 255 (504)
T ss_dssp HHHHHHHHHHHTT---TCEECC--CCSEESSC----CS-SCCCCCEEE-ET-TTTEEEEECSCSHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHC---CCEEEE--CCeEEecC----CC-CcccceEec-cC-CCCceEEeccCHHHHHHHHhhcCCCcEE
Confidence 4556788899888 999997 89885310 01 000111110 12 234556799776655544444 778999
Q ss_pred EEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 179 EiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
|||++||.++.+..|.|+|.|++.-..+ .++.++-..+|.++..+
T Consensus 256 eIg~~FR~E~~~~rH~pEFt~lE~e~af--------------~d~~dlm~l~E~li~~~ 300 (504)
T 1e1o_A 256 EINRNFRNEGISVRHNPEFTMMELYMAY--------------ADYHDLIELTESLFRTL 300 (504)
T ss_dssp EEEEEECCCCCCC-CCSEEEEEEEEEES--------------CCHHHHHHHHHHHHHHH
T ss_pred EEcccccCCCCCccccCceeeeeeeecC--------------CCHHHHHHHHHHHHHHH
Confidence 9999999988888999999988765432 24556666666665544
No 28
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.34 E-value=0.001 Score=69.71 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+.+.||++|... ||.|+. +|+++... +-..-.|-.. ..|+ .+....||.|---++-.++. +--++|
T Consensus 181 ~i~~~iR~f~~~~---gF~EVe--TPiL~~~~-----gGa~a~~F~t-~~~~-~~~~~yL~~SpqL~lk~liv~g~~rVy 248 (521)
T 3bju_A 181 KIITYIRSFLDEL---GFLEIE--TPMMNIIP-----GGAVAKPFIT-YHNE-LDMNLYMRIAPELYHKMLVVGGIDRVY 248 (521)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSEESSC-----CSSSCCCCEE-EETT-TTEEEEECSCSHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHC---CCEEEe--CceeeccC-----CCccccceee-eccc-CCcceEeeCCHHHHHHHHHhcCcCceE
Confidence 3456788899888 999997 89885311 1100112111 0132 34556899877666555555 678999
Q ss_pred EEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 179 EiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
|||++||..+.+..|.|+|.+++.-.. ..|+.++-..+|.|+..+
T Consensus 249 eig~~FR~E~~~trH~pEFtmlE~e~a--------------f~d~~dlm~l~E~li~~v 293 (521)
T 3bju_A 249 EIGRQFRNEGIDLTHNPEFTTCEFYMA--------------YADYHDLMEITEKMVSGM 293 (521)
T ss_dssp EEEEEECCSCCBTTBCSEEEEEEEEEE--------------TCCHHHHHHHHHHHHHHH
T ss_pred EEEcceeCCCCCCccchhhhhhhhhhh--------------cCCHHHHHHHHHHHHHHH
Confidence 999999998888899999998876533 235677777777776554
No 29
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.28 E-value=0.0014 Score=68.71 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+...||++|... ||.|+. +|+++.-. +-....|-.. ..|+ .+....||.|---++..++. +--++|
T Consensus 209 ~i~~~iR~ff~~~---gFlEVe--TPiL~~~~-----gGA~a~pF~t-~~n~-~~~~~yL~~SpqLylk~L~v~G~~rVy 276 (529)
T 4ex5_A 209 KAIASIRKFMGDA---DFMEVE--TPMLHPIP-----GGAAAKPFVT-HHNA-LDMEMFLRIAPELYLKRLIVGGFERVF 276 (529)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSEESSC-----CSSSSCCCEE-EETT-TTEEEEECSCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHC---CCEEEe--CCeeeccC-----CCCccccccc-cccc-CCcceecccCHHHHHHHHHhcCCCcEE
Confidence 5566788899888 999997 89885310 0000012111 0122 33445788877666655554 778999
Q ss_pred EEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHh
Q 014218 179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHL 237 (428)
Q Consensus 179 EiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L 237 (428)
|||++||..+.+..|.|+|.+++.-.. ..++.++-..+|.++..+
T Consensus 277 eIg~~FR~E~~~~rH~pEFtmlE~e~a--------------f~d~~dlm~l~E~li~~v 321 (529)
T 4ex5_A 277 EINRNFRNEGVSPRHNPEFTMMEFYAA--------------YTDYRWLMDFTERLIRQA 321 (529)
T ss_dssp EEEEEECCSCCBTTBCSEEEEEEEEEE--------------TCCHHHHHHHHHHHHHHH
T ss_pred EeehheecCCCCCCcccHhHhhhhhhh--------------cCCHHHHHHHHHHHHHHH
Confidence 999999998888899999998876543 235566666666666544
No 30
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.03 E-value=0.0031 Score=64.71 Aligned_cols=90 Identities=10% Similarity=0.216 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCC--ccccccccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADH--VSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dh--p~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
.+...||++|... ||.|+. +|+++... ++.+ .... ++ ......||.|---++..++. +-.+
T Consensus 142 ~i~~~iR~f~~~~---gF~EVe--TPiL~~~~-------~eg~~~~f~~---~~-~~~~~yL~~Spql~~q~l~~~g~~r 205 (438)
T 3nem_A 142 SVFKAVRDFFHEN---GFIEIH--TPKIIATA-------TEGGTELFPM---KY-FEEDAFLAQSPQLYKQIMMASGLDR 205 (438)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSEESSC-------SSCSSSCCEE---EE-TTEEEEECSCSHHHHHHGGGTTCCE
T ss_pred HHHHHHHHHHHHC---CcEEEe--CCEEecCC-------CCCCccceeE---ee-CCccEEEecChHHHHHHHHhcCCCc
Confidence 5667889999988 999997 89885321 1111 1111 12 23456788877666665654 7789
Q ss_pred EEEEeeEEecCCCC-CCCCcceEEEEEEEE
Q 014218 177 FLVTGDVYRRDSID-STHYPVFHQMEGVSI 205 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d-~~~~p~f~q~~g~~~ 205 (428)
+|+||++||.++.+ ..|.|+|.|++.-..
T Consensus 206 vf~i~~~FR~E~~~t~RH~pEFt~le~e~a 235 (438)
T 3nem_A 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235 (438)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEE
T ss_pred eEEEcceEECCCCCCcccccceeeeeeeec
Confidence 99999999987765 359999998887544
No 31
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.00 E-value=0.0025 Score=65.29 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCCeEEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLV 179 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~~~FE 179 (428)
.+.+.||++|... ||.|+. +|+++... ++.+ ++.- ..++......||.|---++.-++.+-.++||
T Consensus 137 ~i~~~iR~ff~~~---gFlEVe--TPiL~~s~-------~eG~-~~~F-~~~~~g~~~~L~~SpqLylq~l~~g~~rvfe 202 (435)
T 2xgt_A 137 AATRAMREHFYNA---GYVEVA--PPTLVQTQ-------VEGG-STLF-NLDYFGEQSFLTQSSQLYLETCIPTLGDVFC 202 (435)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSEESCC-------SSCT-TSCC-EEEETTEEEEECSCSHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHC---CCEEEE--CCeEeecc-------CCCc-hhce-eeccCCcccccCCChHHHHHHhhhccCceEE
Confidence 4556788999988 999997 89874221 1111 0000 1123334456776644333333335579999
Q ss_pred EeeEEecCCCC-CCCCcceEEEEEEEE
Q 014218 180 TGDVYRRDSID-STHYPVFHQMEGVSI 205 (428)
Q Consensus 180 iG~Vyr~d~~d-~~~~p~f~q~~g~~~ 205 (428)
||+|||.++.+ ..|.|+|.|++.-..
T Consensus 203 Ig~~FR~E~~~t~RH~~EFT~lE~e~a 229 (435)
T 2xgt_A 203 IAQSYRAEKSRTRRHLAEYAHVEAECP 229 (435)
T ss_dssp EEEEECCCSSCCTTCCSEEEEEEEEEE
T ss_pred EecceecCCCCccccccceeEEEEEEe
Confidence 99999987765 479999998876544
No 32
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=96.97 E-value=0.0066 Score=64.49 Aligned_cols=111 Identities=14% Similarity=0.250 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCc--hhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSV--KQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~--~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
.+.+.||++|... ||.|+. +|+++. .+.- .+-...+ +.+-.++..||.|---++.-++. +--+
T Consensus 143 ~i~~~iR~fl~~~---gFlEVe--TPiL~~s~~eGA--------r~F~v~~-~~~~~~~y~L~qSPQl~kq~Lmv~G~~r 208 (585)
T 1c0a_A 143 KITSLVRRFMDDH---GFLDIE--TPMLTKATPEGA--------RDYLVPS-RVHKGKFYALPQSPQLFKQLLMMSGFDR 208 (585)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSSBCCCSSSS--------CCCEEEC-SSSTTCEEECCSCSHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhC---CcEEEe--CCEEecCCCCCC--------ccceecc-cccCCceEeCccCHHHHHHHHHhcCCCc
Confidence 4557789999988 999997 898863 1110 1111100 11112233588766555554444 6789
Q ss_pred EEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 177 FLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
+|+||+|||..+.+.+|-|+|.|++.-.. .++..++-..+|.++..+.
T Consensus 209 vfqI~~~FR~E~~~t~r~pEFT~lE~e~a--------------f~d~~dvm~~~E~li~~i~ 256 (585)
T 1c0a_A 209 YYQIVKCFRDEDLRADRQPEFTQIDVETS--------------FMTAPQVREVMEALVRHLW 256 (585)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEE--------------SCCHHHHHHHHHHHHHHHH
T ss_pred eEEEeceeecCCCCCCcCcccceeeeeec--------------CCCHHHHHHHHHHHHHHHH
Confidence 99999999988888889999988775433 3356778888888777664
No 33
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=96.82 E-value=0.0068 Score=63.66 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFL 178 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~F 178 (428)
.+...||++|... ||.|+. +|+++... .+. + ..+-.+ ++ ......||.|---++..++. +--++|
T Consensus 249 ~i~~~iR~ff~~~---gF~EVe--TPiL~~~~-~eg-g---a~~F~v---~~-~~~~~yL~~Spql~~k~ll~~g~~rVf 314 (548)
T 3i7f_A 249 ACCGLFREFLTSQ---KFVEIH--TPKLIGCS-SEG-G---SNIFEV---KY-FDRKAYLAQSPQLYKQMAIMGDFRKVF 314 (548)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSBC----------------------------CCBCSCTHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHhC---CCEEEe--CCEEeccc-CCC-C---cceeEE---ec-CCCceEeccCHHHHHHHHHhcCcCcEE
Confidence 4455668889888 999996 89886432 110 0 011111 23 34456899887777666666 788999
Q ss_pred EEeeEEecCCCC-CCCCcceEEEEEEE
Q 014218 179 VTGDVYRRDSID-STHYPVFHQMEGVS 204 (428)
Q Consensus 179 EiG~Vyr~d~~d-~~~~p~f~q~~g~~ 204 (428)
+||+|||..+.+ ..|.|+|.+++.-.
T Consensus 315 eI~~~FR~E~~~t~RHl~EFtmlE~e~ 341 (548)
T 3i7f_A 315 EVGPVFRAENSNTRRHLTEFEGLDIEM 341 (548)
T ss_dssp EEEEECCCSCCCSSSCCSCEEEEEEEE
T ss_pred EEeeeEecCCCCCCCcchhhhchhhhh
Confidence 999999987653 67999999887654
No 34
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=96.71 E-value=0.082 Score=53.86 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh-----
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK----- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~----- 172 (428)
..+.+.+++.+... ||+|+. +|++...+.+...|--++. . .+-|.. ++.-+||+...+++....+
T Consensus 176 ~~L~~~~~~~~~~~---Gy~ev~--tP~l~~~~l~~~sG~~~~f--~--~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s 246 (425)
T 2dq3_A 176 RALINFMLDLHTKK---GYKEIC--PPHLVKPEILIGTGQLPKF--E--EDLYKCERDNLYLIPTAEVPLTNLYREEILK 246 (425)
T ss_dssp HHHHHHHHHHHHHT---TCEEEE--CCSEECHHHHHHHSCTTTT--G--GGSCBCTTTCCEECSSTHHHHHGGGTTEEEE
T ss_pred HHHHHHHHHHHHHc---CCEEEE--CCccccHHHHHhcCCCCcC--h--hhheEecCCeEEEcCCCcHHHHHHHHhhccc
Confidence 34455555566655 999996 8887666656554432211 0 122322 3456888888888777765
Q ss_pred ---cCCeEEEEeeEEecCCCC----C---CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccce
Q 014218 173 ---EHNHFLVTGDVYRRDSID----S---THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVE 242 (428)
Q Consensus 173 ---~~~~~FEiG~Vyr~d~~d----~---~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~ 242 (428)
.|++++.+|.|||..... . .....|+|+++.....+++ ....+.++....+.++..|+++
T Consensus 247 ~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~--------s~~~~~e~i~~~~~il~~LGL~-- 316 (425)
T 2dq3_A 247 EENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDT--------SYDELEKLVKDAEEVLQLLGLP-- 316 (425)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHHHHTCC--
T ss_pred cccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHH--------HHHHHHHHHHHHHHHHHHCCCc--
Confidence 389999999999976532 1 1345788888876654322 1112467888888999999875
Q ss_pred eEEee-ccCCCCCCC-c--eEEEEEC--CeeEEEeeeeeccHHHHHHcCCCC------c-----eEEEEEechhHHHHhh
Q 014218 243 MRWVD-TYFPFTNPS-Y--ELEIFFK--ENWLEVLGCGVTEQEILKRSGKLN------N-----VAWAFGLGLERLAMVL 305 (428)
Q Consensus 243 ~~~~~-~~~p~~hPg-~--~a~I~~~--g~~iGvlG~G~ihP~vl~~~gi~~------~-----v~~afEL~Le~L~m~~ 305 (428)
++... +.-+..++. + .++++.. +.|.++++|+-..---.+++++.. . ..+..++.++|+...+
T Consensus 317 ~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~R~i~al 396 (425)
T 2dq3_A 317 YRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAI 396 (425)
T ss_dssp EEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHH
T ss_pred eEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEEEEeccccHHHHHHHHH
Confidence 44322 111111121 2 3555663 467777777554322256666531 0 1234456689986553
Q ss_pred c
Q 014218 306 F 306 (428)
Q Consensus 306 ~ 306 (428)
.
T Consensus 397 l 397 (425)
T 2dq3_A 397 L 397 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.64 E-value=0.01 Score=61.72 Aligned_cols=87 Identities=16% Similarity=0.298 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCC--CccccccccccccCCcccccchhHHHHHHHh-cCCeE
Q 014218 101 LKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPAD--HVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHF 177 (428)
Q Consensus 101 l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~d--hp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~ 177 (428)
+.+.||++|... ||.|+. +|+++... .+. .+-. .++......||.|---++..++. +..++
T Consensus 184 i~~~ir~~~~~~---gF~EV~--TPil~~~~-------~~~ga~~f~----~~~~~~~~~L~~Spql~~k~l~~~g~~rv 247 (487)
T 1eov_A 184 VCELFREYLATK---KFTEVH--TPKLLGAP-------SEGGSSVFE----VTYFKGKAYLAQSPQFNKQQLIVADFERV 247 (487)
T ss_dssp HHHHHHHHHHHT---TCEECC--CCSEESSC-------SSSSSCCCE----EEETTEEEEECSCTHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhC---CcEEEe--CCEEEEec-------CCCCcccce----eccCCccEEcccChHHHHHHHHhcCCCce
Confidence 445568899888 999997 89885321 011 1111 22344567888666555544434 78999
Q ss_pred EEEeeEEecCCCC-CCCCcceEEEEEE
Q 014218 178 LVTGDVYRRDSID-STHYPVFHQMEGV 203 (428)
Q Consensus 178 FEiG~Vyr~d~~d-~~~~p~f~q~~g~ 203 (428)
|++|+|||.++.+ ..|.|+|+|++.-
T Consensus 248 y~ig~~FR~E~~~~~Rh~pEFt~le~e 274 (487)
T 1eov_A 248 YEIGPVFRAENSNTHRHMTEFTGLDME 274 (487)
T ss_dssp EEEEEEECCCCCCCTTCCSEEEEEEEE
T ss_pred EEEeccEecCCCCCCccchhhhhhhhh
Confidence 9999999987764 4688999988763
No 36
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=96.61 E-value=0.021 Score=60.83 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=74.4
Q ss_pred HHHHHHHHHHh-ccCCCCcEEEccCCCccCchhhhhhcCCCCC-CccccccccccccCCcccccchhHHHHHHHh-cCCe
Q 014218 100 ILKNAIYEYFD-SNYPNKFNKFDDLCPIVSVKQNFDDVLVPAD-HVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNH 176 (428)
Q Consensus 100 ~l~~~I~~~l~-~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~d-hp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~ 176 (428)
.+...||++|. .. ||.|+. +|+++.. .|+. .+-.... + .......|+.|---.+..++. +--+
T Consensus 153 ~i~~~iR~f~~~~~---gF~EVe--TPiL~~s-------t~~GA~~F~v~~-~-~~g~~~~L~qSpql~kq~l~v~g~~r 218 (617)
T 4ah6_A 153 QMVMKMREYLCNLH---GFVDIE--TPTLFKR-------TPGGAKEFLVPS-R-EPGKFYSLPQSPQQFKQLLMVGGLDR 218 (617)
T ss_dssp HHHHHHHHHHHTTS---CCEECC--CCSSBCC-------CCSSSCCCEEEC-S-STTCEEECCSSTTHHHHHHHHTSCSE
T ss_pred HHHHHHHHHHHhcC---CeEEEe--CCeeccC-------CCCCCcCceecc-c-cCCcccccccCHHHHHHHHHhcccCc
Confidence 45677888885 56 999996 8998631 0110 0111100 1 122344677765433333343 7789
Q ss_pred EEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 177 FLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 177 ~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
+|+||++||.++.+..|.|+|.|++.-.. .++..++-..+|.++..++.
T Consensus 219 vfqi~~~FR~E~~~t~r~pEFt~lE~e~a--------------f~d~~d~m~~~E~l~~~~~~ 267 (617)
T 4ah6_A 219 YFQVARCYRDEGSRPDRQPEFTQIDIEMS--------------FVDQTGIQSLIEGLLQYSWP 267 (617)
T ss_dssp EEEEEEEECCCSSCSSSCSEEEEEEEEEE--------------SCCHHHHHHHHHHHHHHHSC
T ss_pred EEEEEhheecccCCCCcCcceecceeeec--------------CCCHHHHHHHHHHHHHHHHH
Confidence 99999999988878889999988876533 34678999999999998864
No 37
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.59 E-value=0.0062 Score=62.74 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHhcCCeEEE
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLV 179 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~~~~~~FE 179 (428)
.+.+.||++|... ||.|+. +|+++... .. |-. .+-. -|++ .....||.|---++.-++.+-.++||
T Consensus 161 ~i~~~iR~ff~~~---gF~EVe--TPiL~~s~-~e--Gg~--~~f~---~~~~-~~~~~L~~SpqL~lq~l~~g~~rVye 226 (456)
T 3m4p_A 161 EIQWYFRKYYHDN---HFTEIQ--PPTIVKTQ-CE--GGS--TLFK---LQYF-NEPAYLTQSSQLYLESVIASLGKSFC 226 (456)
T ss_dssp HHHHHHHHHHHHT---TCEECC--CCSEEC---------C--CCCE---EEET-TEEEEECSCCHHHHHTTHHHHSSEEE
T ss_pred HHHHHHHHHHHhC---CCEEEe--CCeeecCC-CC--Ccc--cccc---cccc-CCCcccccCHHHHHHHHHhccCcEEE
Confidence 5667788899888 999997 89875321 00 000 0101 1333 33446776654444333334578999
Q ss_pred EeeEEecCCCC-CCCCcceEEEEEEEE
Q 014218 180 TGDVYRRDSID-STHYPVFHQMEGVSI 205 (428)
Q Consensus 180 iG~Vyr~d~~d-~~~~p~f~q~~g~~~ 205 (428)
+|+|||.++.+ ..|.|+|.+++.-..
T Consensus 227 ig~~FR~E~~~t~rH~pEFtmlE~e~a 253 (456)
T 3m4p_A 227 MLSSYRAEQSRTVRHLAEYLHLEAELP 253 (456)
T ss_dssp EEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred EEhheecCCCCCCcchHHHHHhHHHHh
Confidence 99999987654 579999998876544
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.45 E-value=0.018 Score=57.66 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=78.3
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHH
Q 014218 91 HKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAH 166 (428)
Q Consensus 91 ~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ 166 (428)
+.......+.+.+.|++.|... ||.|+. +|++...+.|..-+ ++.... ..|.. .+.-+||+-++|.
T Consensus 33 lP~~~~~~~~i~~~i~~~f~~~---Gy~eI~--tP~le~~el~~~~g---~~~~~~--~my~~~D~~g~~l~LRpd~T~~ 102 (373)
T 3rac_A 33 YPDFAKRRRAVETRLLSFVEDA---GYEPVT--SGLFEYVDTLLRAR---SPESSR--DWIRLFDGGGDAVALRPEMTPS 102 (373)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHHHTTS---CTTSCC--CCCBCCCCSSSCEEECSSSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHc---CCeEEE--CCceeeHHHHhhcC---Cccchh--ceEEEECCCCCEEEECCcCHHH
Confidence 3333445678889999999888 999996 89886666565432 111101 22222 3446899999998
Q ss_pred HHHHHh-------cCCeEEEEeeEEecCCC------CCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHH
Q 014218 167 QAELLK-------EHNHFLVTGDVYRRDSI------DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGL 233 (428)
Q Consensus 167 ll~~l~-------~~~~~FEiG~Vyr~d~~------d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~L 233 (428)
....+. .+.|+|++|.|||.+.. ...++..|+|..+-.+...+. ...| .++-.++..+
T Consensus 103 ~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~--------~~aD-aEvi~l~~~~ 173 (373)
T 3rac_A 103 IARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEAS--------VDVD-MDVLRLLHEA 173 (373)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCC--------HHHH-HHHHHHHHHH
T ss_pred HHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCC--------HHHH-HHHHHHHHHH
Confidence 776653 58999999999997654 334566777764443322111 1223 3455566666
Q ss_pred HHHhcc
Q 014218 234 ARHLFG 239 (428)
Q Consensus 234 l~~L~~ 239 (428)
+..+++
T Consensus 174 l~~lgl 179 (373)
T 3rac_A 174 SAAAGV 179 (373)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 676654
No 39
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=96.44 E-value=0.011 Score=58.69 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=81.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cCCCCCCcccccccccc----ccCCcccccchh
Q 014218 90 LHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VLVPADHVSRSYNDTYY----VDSQTVLRCHTS 164 (428)
Q Consensus 90 l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~~p~dhp~r~~~~np~----~~e~~~LRtsL~ 164 (428)
++.........+.+.|++.|... ||.|+. +|++...+.|.. ++-.-+.... ..+. ..+.-+||+-++
T Consensus 31 ~lP~~~~~~~~i~~~i~~~~~~~---Gy~eI~--tP~le~~el~~~s~~g~~~~~~~---~my~~~D~~g~~l~LRpd~T 102 (344)
T 1z7m_A 31 MTLNQVKSLRQIEGRLRKLFSLK---NYQEVM--PPSFEYTQLYTALESNGKTFNQE---KMFQFIKHEGQSITLRYDFT 102 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHHHHHHCSSSCCCTT---SCCEEECTTCCEEEECCCSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc---CCEEec--CcccCcHHHHhhccCCccccccc---cEEEEECCCCCEEecCCCCc
Confidence 33334456788999999999888 999996 898876666654 2111111111 1122 234568999999
Q ss_pred HHHHHHHh-----cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 165 AHQAELLK-----EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 165 ~~ll~~l~-----~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
+....... .+.++|.+|.|||.+.....++..|+|..+-.+.. +. ...| .++-.++..+++.+++
T Consensus 103 ~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~-~~--------~~aD-aEvi~l~~~~l~~lgl 172 (344)
T 1z7m_A 103 LPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGE-SA--------DKSE-LEILSLALQVIEQLGL 172 (344)
T ss_dssp HHHHHHHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESS-CH--------HHHH-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcC-CC--------cHHH-HHHHHHHHHHHHHCCC
Confidence 98887764 57999999999997654445677888875554432 11 1223 3566666777777765
No 40
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=96.36 E-value=0.1 Score=53.59 Aligned_cols=186 Identities=16% Similarity=0.106 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh-----
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK----- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~----- 172 (428)
..|.+.+++.+... ||+|+. +|++...+.+..-|--++ ...+.|.. ++.-+||+..-+++....+
T Consensus 197 ~aL~~~~~~~~~~~---Gy~ev~--tP~l~~~~l~~~sG~~~~----f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s 267 (455)
T 2dq0_A 197 LALIRFALDRLIEK---GFTPVI--PPYMVRRFVEEGSTSFED----FEDVIYKVEDEDLYLIPTAEHPLAGMHANEILD 267 (455)
T ss_dssp HHHHHHHHHHHHHT---TCEEEE--CCSEECHHHHHTTSCTTH----HHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEE
T ss_pred HHHHHHHHHHHHHc---CCEEEe--CCcccCHHHHHhcCCCCC----ChHhhCeecCCcEEEcCcCcHHHHHHHHhCccC
Confidence 34444455555455 999996 888765666665443211 11123333 2456889888888877775
Q ss_pred ---cCCeEEEEeeEEecCCCCC---C----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccce
Q 014218 173 ---EHNHFLVTGDVYRRDSIDS---T----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVE 242 (428)
Q Consensus 173 ---~~~~~FEiG~Vyr~d~~d~---~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~ 242 (428)
.|++++++|.+||...... + .+-.|++.++.....+++ ...-+..+....+.++..|+++
T Consensus 268 ~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~--------s~~~~~e~l~~~~~il~~LGL~-- 337 (455)
T 2dq0_A 268 GKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEE--------SWEWHEKIIRNAEELFQELEIP-- 337 (455)
T ss_dssp TTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTT--------HHHHHHHHHHHHHHHHHHTTCC--
T ss_pred chhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHH--------HHHHHHHHHHHHHHHHHHcCCc--
Confidence 4899999999999765311 1 245688888886655432 1223567888889999999875
Q ss_pred eEEeec--cCCCCCCC--ceEEEEEC--CeeEEEee---eeeccHHHHHHcCCCC-------c--e--EEEEEechhHHH
Q 014218 243 MRWVDT--YFPFTNPS--YELEIFFK--ENWLEVLG---CGVTEQEILKRSGKLN-------N--V--AWAFGLGLERLA 302 (428)
Q Consensus 243 ~~~~~~--~~p~~hPg--~~a~I~~~--g~~iGvlG---~G~ihP~vl~~~gi~~-------~--v--~~afEL~Le~L~ 302 (428)
++.... ...+.--. +.+++|.. |.+.++-. ||-..+ ++++|.. + + .+..++.++|+.
T Consensus 338 yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~Dfqa---rR~~iry~~~~~g~~~~vHtlngs~lav~R~i 414 (455)
T 2dq0_A 338 YRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQA---RRLNIRFRDRTDEKPRYVHTLNSTAIATSRAI 414 (455)
T ss_dssp EEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTH---HHHTEEEESSTTSCCEECEEEEEEEEEHHHHH
T ss_pred eEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHh---hccCcEEecCCCCcEEEEEEEechHhHHHHHH
Confidence 443321 11111111 24666664 46666655 354544 4555421 1 1 123457789986
Q ss_pred Hhhc
Q 014218 303 MVLF 306 (428)
Q Consensus 303 m~~~ 306 (428)
..+.
T Consensus 415 ~all 418 (455)
T 2dq0_A 415 VAIL 418 (455)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 41
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=96.17 E-value=0.027 Score=58.10 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCCccccccccccc-----cCCcccccchhHHHHHHH
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADHVSRSYNDTYYV-----DSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dhp~r~~~~np~~-----~e~~~LRtsL~~~ll~~l 171 (428)
.+.+.+.|++.|... ||.|+. +|++...+.|..- |-..|+. .. ..|.. .+.-+||+.+.|+....+
T Consensus 49 ~~~l~~~i~~~~~~~---Gy~eI~--tP~le~~el~~~~~G~~~d~~-~~--~my~~~D~~~g~~l~LRPd~t~~~ar~~ 120 (467)
T 4e51_A 49 WEFFEATVKSLLRAY---GYQNIR--TPIVEHTPLFTRGIGEVTDIV-EK--EMYSFVDALNGENLTLRPENTAAVVRAA 120 (467)
T ss_dssp HHHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHHHHTCTTSHHH-HH--TCCEEECTTTCCEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCccccHHHhhhccCCccccc-cc--ceEEEecCCCCCEEEeCcccHHHHHHHH
Confidence 356777788888777 999996 8888655555433 2211110 11 22222 344589999999887766
Q ss_pred h-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 172 K-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 172 ~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
. .++++|++|.|||.+......+..|+|..+-.+.... ...| .++-.++..++..|++
T Consensus 121 ~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~---------~~ad-aEvi~l~~~~l~~lGl 185 (467)
T 4e51_A 121 IEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAG---------PDAD-AEIVMMCQRLWEDLGL 185 (467)
T ss_dssp HHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCC---------SHHH-HHHHHHHHHHHHHHTC
T ss_pred HHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCC---------hHHH-HHHHHHHHHHHHHcCC
Confidence 4 3899999999999765444566778876544332211 1223 4666777778888876
No 42
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=96.12 E-value=0.15 Score=51.85 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh-----
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK----- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~----- 172 (428)
..+.+.+++.+... ||+|+. +|++...+.+..-|--++. .. +.|.. ++..+||+.-.+.+...++
T Consensus 170 ~aL~~~~~~~~~~~---Gy~ev~--tP~l~~~~l~~~sG~~~~f--~~--emy~~~d~~l~L~Pt~e~~~~~~~~~~~~s 240 (421)
T 1ses_A 170 LALLRFAMDFMARR---GFLPMT--LPSYAREKAFLGTGHFPAY--RD--QVWAIAETDLYLTGTAEVVLNALHSGEILP 240 (421)
T ss_dssp HHHHHHHHHHHHHT---TCEEEE--CCSEEEHHHHHHHTCTTTT--GG--GSCBBTTSSEEECSSTHHHHHHTTTTCEEE
T ss_pred HHHHHHHHHHHHHc---CCEEEe--CCceecHHHHHhcCCCCcC--ch--hcEEEcCCeEEEeecCcHHHHHHhcccccC
Confidence 34445555555555 999996 8887666666655532221 11 22332 2456788877777777765
Q ss_pred ---cCCeEEEEeeEEecCCC----CCC---CCcceEEEEEEEEEec--CCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 ---EHNHFLVTGDVYRRDSI----DST---HYPVFHQMEGVSIFYP--DEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 ---~~~~~FEiG~Vyr~d~~----d~~---~~p~f~q~~g~~~~~~--~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++.+|.+||.... +.. .+-.|+|+++.....+ ++ ....+..+....+.++..|+++
T Consensus 241 ~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~--------s~~~~~e~~~~~~~il~~LGL~ 312 (421)
T 1ses_A 241 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEA--------SDRAFQELLENAEEILRLLELP 312 (421)
T ss_dssp GGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHH--------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHH--------HHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999997641 111 3457888888766543 11 1223567888899999999875
Q ss_pred ceeEEeecc-CCCCCC-C--ceEEEEEC--CeeEEEeeeeeccHHHHHHcCCCC------ce----EEEEEechhHHHHh
Q 014218 241 VEMRWVDTY-FPFTNP-S--YELEIFFK--ENWLEVLGCGVTEQEILKRSGKLN------NV----AWAFGLGLERLAMV 304 (428)
Q Consensus 241 ~~~~~~~~~-~p~~hP-g--~~a~I~~~--g~~iGvlG~G~ihP~vl~~~gi~~------~v----~~afEL~Le~L~m~ 304 (428)
++..... -...++ . ...++|.. +.|.++.+|.-...--.+.+++.. +. ...-+++++|+...
T Consensus 313 --~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~R~l~a 390 (421)
T 1ses_A 313 --YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAM 390 (421)
T ss_dssp --EEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHH
T ss_pred --eEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHHHHHHH
Confidence 4432211 011111 1 23555653 356666665333211244555532 11 23355668887654
Q ss_pred h
Q 014218 305 L 305 (428)
Q Consensus 305 ~ 305 (428)
+
T Consensus 391 l 391 (421)
T 1ses_A 391 L 391 (421)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=96.12 E-value=0.031 Score=56.51 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ll~~l~ 172 (428)
-.+.+.+.|++.|... ||.|+. +|++...+.|...+ ++. .. ..|.. .+.-+||+-++|+....+.
T Consensus 26 ~~~~i~~~l~~~~~~~---Gy~eI~--tP~lE~~el~~~~g---~~~-~~--~my~f~D~~g~~l~LRpd~T~~~aR~~~ 94 (400)
T 3od1_A 26 TKKNICDQMTEEINLW---GYDMIE--TPTLEYYETVGVVS---AIL-DQ--QLFKLLDQQGNTLVLRPDMTAPIARLVA 94 (400)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECB--CCSEEETTTHHHHS---SSC-GG--GSCEEECTTSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCEEEe--CCccccHHHHhhcC---Ccc-cc--ceEEEECCCCCEEEECCCCHHHHHHHHH
Confidence 3467888888888887 999997 88885555454432 221 11 22222 2345899999998877653
Q ss_pred -------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 173 -------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
.+.|+|.+|.|||.+......+..|+|..+-.+
T Consensus 95 ~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~ 134 (400)
T 3od1_A 95 SSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELI 134 (400)
T ss_dssp HHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEE
T ss_pred hhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEE
Confidence 479999999999976544456778888755444
No 44
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=95.95 E-value=0.16 Score=52.16 Aligned_cols=190 Identities=12% Similarity=0.110 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cCCCCCCccccccccccc--------cCCcccccchhHHHH
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VLVPADHVSRSYNDTYYV--------DSQTVLRCHTSAHQA 168 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~~p~dhp~r~~~~np~~--------~e~~~LRtsL~~~ll 168 (428)
.+.+.+.+++.|... ||+|+. +|++...+.|.. .+ |........|.. ++.-+||+...++..
T Consensus 41 ~~~i~~~~~~~~~~~---G~~ei~--tP~l~~~~l~~~~~G----~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~ 111 (459)
T 1nj8_A 41 RRYTFEIIRNLLDES---GHDEAL--FPMLIPEDLLAKEAE----HIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIY 111 (459)
T ss_dssp HHHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHHHHCS----SSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCEEee--CCcccCHHHHhhhcC----cccccchhhEEEeccCcccCCCeeEECCCCcHHHH
Confidence 355667777777776 999986 888766665643 22 210000012221 355689998888877
Q ss_pred HHHh--------cCCeEEEEeeEEecCCC-CCC--CCcceE-EEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHH
Q 014218 169 ELLK--------EHNHFLVTGDVYRRDSI-DST--HYPVFH-QMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARH 236 (428)
Q Consensus 169 ~~l~--------~~~~~FEiG~Vyr~d~~-d~~--~~p~f~-q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~ 236 (428)
..+. .|++++.+|.|||.+.. ... .+..|+ |.++-.++.... ....-+..+......++..
T Consensus 112 ~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~-------~a~~e~~~~i~~~~~~~~~ 184 (459)
T 1nj8_A 112 YMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKE-------EAENQVKEAISIYKKFFDT 184 (459)
T ss_dssp HHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHH-------HHHHHHHHHHHHHHHHHHH
Confidence 7764 47999999999996544 211 355788 666544332100 0111223467777788888
Q ss_pred hcccceeEEeec--cCCCCCCCceEEEEEC-CeeEEEee-eeeccHHHHHHcCCCC--------c-eEEEEEechhHHHH
Q 014218 237 LFGAVEMRWVDT--YFPFTNPSYELEIFFK-ENWLEVLG-CGVTEQEILKRSGKLN--------N-VAWAFGLGLERLAM 303 (428)
Q Consensus 237 L~~~~~~~~~~~--~~p~~hPg~~a~I~~~-g~~iGvlG-~G~ihP~vl~~~gi~~--------~-v~~afEL~Le~L~m 303 (428)
|++++.....+. .++.....+.++.++. |..+ .+| +-.+.....+.+|+.. . ....++++ +|+..
T Consensus 185 LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~-e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gig-eRli~ 262 (459)
T 1nj8_A 185 LGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTM-QIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIA 262 (459)
T ss_dssp HTCCCEEEEECTTSCCTTCSEEEEEEEECTTSCEE-EEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEEC-THHHH
T ss_pred CCCceEEeecCchhhcCCcccceeEEEEcCCCcEE-EEEEEeecccccccccCeEEECCCCCEeeeeEeeccHH-HHHHH
Confidence 887643332221 1111111134555553 3322 222 1223344556676631 1 23456666 99876
Q ss_pred hh
Q 014218 304 VL 305 (428)
Q Consensus 304 ~~ 305 (428)
.+
T Consensus 263 al 264 (459)
T 1nj8_A 263 SI 264 (459)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 45
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=95.75 E-value=0.38 Score=50.42 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=104.4
Q ss_pred HHHHHHHHHH----HhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc-cCCcccccchhHHHHHHHh-
Q 014218 99 GILKNAIYEY----FDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV-DSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 99 ~~l~~~I~~~----l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~-~e~~~LRtsL~~~ll~~l~- 172 (428)
..+.+.|.++ +... ||+|+. +|.+...+-+..-|.-+.. .. +-|.. ++..+|+++--+.+.+..+
T Consensus 275 a~l~~aL~~~~~~~~~~~---Gy~ev~--~P~lv~~~l~~~sG~~~~f--~e--~mf~~~~~~~~L~PT~E~~~~~l~~~ 345 (536)
T 3err_A 275 ALYELALLRFAMDFMARR---GFLPMT--LPSYAREKAFLGTGHFPAY--RD--QVWAIAETDLYLTGTAEVVLNALHSG 345 (536)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCEEEE--CCSEEEHHHHHHHTCTTTT--GG--GCCEETTTTEEECSSTHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHc---CCEEEe--ccccccHHHHHhcCCcccC--hh--hceEecCCCEEEccCCcHHHHHHHhc
Confidence 3444554444 4444 999996 7877656555555542211 01 22322 2456777777777777765
Q ss_pred -------cCCeEEEEeeEEecCCC----CCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhc
Q 014218 173 -------EHNHFLVTGDVYRRDSI----DST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~----d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~ 238 (428)
.|++++++|.+||.... +.. ..-.|.+.++.....++ +.+ ..-.+..+.+..+.++..|+
T Consensus 346 ~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe-~e~-----s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 346 EILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAS-LEA-----SDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp CEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSC-HHH-----HHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCc-hHH-----HHHHHHHHHHHHHHHHHHcC
Confidence 58999999999986542 111 23467778887665543 000 12235778888899999998
Q ss_pred ccceeEEeec--cCCCCCCCc--eEEEEEC--CeeEEEeeeeeccHHHHHHcCCCC------c--e--EEEEEechhHHH
Q 014218 239 GAVEMRWVDT--YFPFTNPSY--ELEIFFK--ENWLEVLGCGVTEQEILKRSGKLN------N--V--AWAFGLGLERLA 302 (428)
Q Consensus 239 ~~~~~~~~~~--~~p~~hPg~--~a~I~~~--g~~iGvlG~G~ihP~vl~~~gi~~------~--v--~~afEL~Le~L~ 302 (428)
++ ++.+.. ....+.-.+ .+++|.- +.|.++.+|--...--.+++++.. + + ...-++.++|+.
T Consensus 420 Lp--yrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~R~l 497 (536)
T 3err_A 420 LP--YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRIL 497 (536)
T ss_dssp CC--EEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHH
T ss_pred Cc--EEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHHHHH
Confidence 75 554332 111111222 3455653 457777665322222344555521 1 1 112346678875
Q ss_pred Hh
Q 014218 303 MV 304 (428)
Q Consensus 303 m~ 304 (428)
..
T Consensus 498 ~a 499 (536)
T 3err_A 498 AM 499 (536)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 46
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=95.71 E-value=0.043 Score=55.35 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHH
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l 171 (428)
.....+.+.+++.|... ||+|+. +|++...+.|..-. .+|........+. ..+.-+||+.+.++....+
T Consensus 17 ~~~~~i~~~~~~~~~~~---G~~ei~--tP~l~~~~l~~~~~--g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~ 89 (420)
T 1qe0_A 17 KKWRYIENQLDELMTFY---NYKEIR--TPIFESTDLFARGV--GDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSY 89 (420)
T ss_dssp HHHHHHHHHHHHHHHHH---TCEECB--CCSEEEHHHHCC-------------CCEEECHHHHCCEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---CCEEcc--CcccchHHHhhhcc--CCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHH
Confidence 34577888888888887 999996 88886555443320 0111000001222 2356789999988887765
Q ss_pred h---------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 172 K---------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 172 ~---------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
. .|.+++.+|.|||.+......+..|+|..+-.+..+. ...+ .++-..+..++..|+++
T Consensus 90 ~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~---------~~~d-~e~i~~~~~~l~~lgl~ 157 (420)
T 1qe0_A 90 IEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAEN---------PSVD-AEVLAMVMHIYQSFGLK 157 (420)
T ss_dssp HHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCC---------HHHH-HHHHHHHHHHHHHTTCC
T ss_pred HhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCC---------chhH-HHHHHHHHHHHHHcCCC
Confidence 3 2689999999999764434456678776655443211 1223 56667777788888764
No 47
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=95.70 E-value=0.24 Score=51.16 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc--------cCCcccccchhHHHHH
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV--------DSQTVLRCHTSAHQAE 169 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~--------~e~~~LRtsL~~~ll~ 169 (428)
.+.+.+.+++.|... ||+|+. +|++...+.|..- .+|.-......|.. ++.-+||+...++...
T Consensus 47 ~~~I~~~~r~~~~~~---G~~ei~--tP~l~~~el~~~~---sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~ 118 (477)
T 1hc7_A 47 WENIQQVLDRMFKET---GHQNAY--FPLFIPMSFLRKE---AEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGY 118 (477)
T ss_dssp HHHHHHHHHHHHHHT---TCEECB--CCSEEESTTC------------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCEEEe--cCccccHHHHhhc---CCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHH
Confidence 356667777777776 999996 8887655444330 11210000011111 3456899988887666
Q ss_pred HHh--------cCCeEEEEeeEEecCCCCCC--CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHH-HHhc
Q 014218 170 LLK--------EHNHFLVTGDVYRRDSIDST--HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLA-RHLF 238 (428)
Q Consensus 170 ~l~--------~~~~~FEiG~Vyr~d~~d~~--~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll-~~L~ 238 (428)
.++ .|++++.+|.|||.+..... .+..|+|.++-.++.... .....+..+......++ ..|+
T Consensus 119 ~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~-------~ad~E~~~~l~~~~~i~~~~Lg 191 (477)
T 1hc7_A 119 MWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATRE-------EAEEEVRRMLSIYARLAREYAA 191 (477)
T ss_dssp HHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHH-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 654 58999999999997633222 456788887765432110 01111233445567788 6788
Q ss_pred ccceeEEeeccCCCC--CCCceEEEEE-CCeeEEEeeeee---ccHHHHHHcCCCC--------ce-EEEEEechhHHHH
Q 014218 239 GAVEMRWVDTYFPFT--NPSYELEIFF-KENWLEVLGCGV---TEQEILKRSGKLN--------NV-AWAFGLGLERLAM 303 (428)
Q Consensus 239 ~~~~~~~~~~~~p~~--hPg~~a~I~~-~g~~iGvlG~G~---ihP~vl~~~gi~~--------~v-~~afEL~Le~L~m 303 (428)
+++.+...+....|. ...+.++.++ +|+.+ .||- +.....+.+|+.. .+ ...++++ +|+..
T Consensus 192 l~~~~~~~~~~e~~~g~~~~~~ie~~~~dgr~~---~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~Gig-eRli~ 267 (477)
T 1hc7_A 192 IPVIEGLKTEKEKFAGAVYTTTIEALMKDGKAL---QAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS-WRFIG 267 (477)
T ss_dssp CCCEEEECCTTTSCTTSSEEEEEEEECTTSCEE---EEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEE-THHHH
T ss_pred CeEEEEeCChHHhcCCcccceEEEEEcCCCcEE---EEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHH-HHHHH
Confidence 753332222111121 1224566665 34432 2233 3345566777631 11 2356777 99876
Q ss_pred hh
Q 014218 304 VL 305 (428)
Q Consensus 304 ~~ 305 (428)
.+
T Consensus 268 ~l 269 (477)
T 1hc7_A 268 AI 269 (477)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 48
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=95.51 E-value=0.045 Score=55.11 Aligned_cols=125 Identities=7% Similarity=0.042 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc---ccCCcccccchhHHHHHHHh--
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY---VDSQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~---~~e~~~LRtsL~~~ll~~l~-- 172 (428)
.+.+.+.+++.|... ||+|+. +|++...+-|...|-- ++ .....+. ..+.-+||+...++....++
T Consensus 33 ~~~i~~~~~~~~~~~---G~~ei~--tP~l~~~~l~~~sG~~-~~---~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~ 103 (401)
T 1evl_A 33 FRELEVFVRSKLKEY---QYQEVK--GPFMMDRVLWEKTGHW-DN---YKDAMFTTSSENREYCIKPMNCPGHVQIFNQG 103 (401)
T ss_dssp HHHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHHHHTHH-HH---SGGGCCEEEETTEEEEECSCSHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCeeccHHHHHhcCcH-hh---hchhhEeEecCCceEEEcCCCCHHHHHHHHhh
Confidence 356677777788776 999996 8888666655543210 00 0001111 12456899988888777664
Q ss_pred ------cCCeEEEEeeEEecCCCCCC----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 ------EHNHFLVTGDVYRRDSIDST----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~d~~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.|||.+...+. .+..|+|.++-....+.+ ....+.++......++..|++
T Consensus 104 ~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~--------~~~e~~e~i~~~~~~~~~lgl 172 (401)
T 1evl_A 104 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ--------IRDEVNGCIRLVYDMYSTFGF 172 (401)
T ss_dssp CCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHH--------HHHHHHHHHHHHHHHHHHcCC
Confidence 47999999999997653111 467888888765532111 112234677777888888886
No 49
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=95.43 E-value=0.076 Score=53.58 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCCcccccccccc----ccCCcccccchhHHHH
Q 014218 94 NQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQA 168 (428)
Q Consensus 94 ~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll 168 (428)
...-...+.+.|++.|... ||+|+. +|++...+.|..- |-.-|+... ..+. ..+.-+||+-+++...
T Consensus 16 ~~~~~~~i~~~i~~~~~~~---G~~ei~--tP~le~~el~~~~~G~~~d~~~~---em~~~~D~~g~~l~Lrpd~t~~~a 87 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAA---GALELV--TPIFEETQVFEKGVGAATDIVRK---EMFTFQDRGGRSLTLRPEGTAAMV 87 (421)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCEEec--ccccccHHHhhhccCCccccccc---ceEEEECCCCCEEeeCCcchHHHH
Confidence 3445678889999999888 999996 8888665555433 211111110 1111 2355799998888877
Q ss_pred HHHh--------cCCeEEEEeeEEecCCCCCCCCcceEEEEE
Q 014218 169 ELLK--------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEG 202 (428)
Q Consensus 169 ~~l~--------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g 202 (428)
.... .|+++|.+|.|||.+......+..|+|..+
T Consensus 88 r~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~ 129 (421)
T 1h4v_B 88 RAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNY 129 (421)
T ss_pred HHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccE
Confidence 6552 379999999999966443345667776544
No 50
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=95.39 E-value=0.076 Score=56.93 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----cc-CCcccccchhHHHHHHHh
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VD-SQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~-e~~~LRtsL~~~ll~~l~ 172 (428)
.+.+.+.+++.+... ||+|+. +|++...+-|..-| |--......|. .+ +.-+||+...|+....+.
T Consensus 274 ~~~l~~~ir~~~~~~---Gy~eV~--tP~l~~~~l~~~sG----~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~ 344 (645)
T 1nyr_A 274 RREIERYIVDKEVSM---GYDHVY--TPVLANVDLYKTSG----HWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344 (645)
T ss_dssp HHHHHHHHHHHHHHT---TEEECB--CCSEEETHHHHHHT----HHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCeeccHHHHhhCC----CccccccCcceeEecCCCeEEEeCCCCCHHHHHHHH
Confidence 456667777777776 999996 88876555554433 10000001111 12 456899999998887774
Q ss_pred --------cCCeEEEEeeEEecCCCCC----CCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 --------EHNHFLVTGDVYRRDSIDS----THYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 --------~~~~~FEiG~Vyr~d~~d~----~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.|||.+.... ..+..|+|..+-....++. ..-.+.++...+..++..|++
T Consensus 345 ~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~--------~~d~~~e~i~~~~~~l~~lGl 415 (645)
T 1nyr_A 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQ--------IKEEFKRVVNMIIDVYKDFGF 415 (645)
T ss_dssp TSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHH--------HHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999765422 1357788887766543322 111245677788888898887
No 51
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=95.38 E-value=0.074 Score=54.74 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCC--cccccccccc--------------ccCCccccc
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADH--VSRSYNDTYY--------------VDSQTVLRC 161 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dh--p~r~~~~np~--------------~~e~~~LRt 161 (428)
.+.+.+.|++.|... ||.|+. +|++...+.|..-| ..+. .-+. .... ..+.-+||+
T Consensus 29 ~~~i~~~l~~~~~~~---Gy~~i~--tP~~E~~~~~~~~G-~~~ke~m~~~--~d~~~~g~~~~~~~~~~~~g~~l~LRp 100 (465)
T 3net_A 29 ELYLLDTIRRVYESY---GFTPIE--TPAVERLEVLQAKG-NQGDNIIYGL--EPILPPNRQAEKDKSGDTGSEARALKF 100 (465)
T ss_dssp HHHHHHHHHHHHHHT---TCEECC--CCSEEEHHHHHGGG-CC--CBEEEE--EEEC----------------CCEEECS
T ss_pred HHHHHHHHHHHHHHc---CCEEee--ccccccHHHHhccC-CCCccceEEE--ecccccccccccccccCCCCCEEEeCC
Confidence 456788888888887 999996 89886655564433 1110 0010 0110 234568999
Q ss_pred chhHHHHHHHh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEE
Q 014218 162 HTSAHQAELLK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIF 206 (428)
Q Consensus 162 sL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~ 206 (428)
-+++.....+. .+.|+|.+|.|||.+.....++..|+|...-.+.
T Consensus 101 d~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G 152 (465)
T 3net_A 101 DQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVG 152 (465)
T ss_dssp CSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEEC
T ss_pred CChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEEC
Confidence 99998877653 4789999999999875545567788887555443
No 52
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=95.25 E-value=1.3 Score=45.88 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCC-CCCCcccccccccccc----CCcccccchhHHHHHHHh--
Q 014218 100 ILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLV-PADHVSRSYNDTYYVD----SQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 100 ~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~-p~dhp~r~~~~np~~~----e~~~LRtsL~~~ll~~l~-- 172 (428)
.|.+-+++.+... ||+|+. +|.+...+.+..-|. |...+ .+-|... +.-+||++--+.+.+..+
T Consensus 224 aL~~~~~d~~~~~---Gy~eV~--~P~lv~~~l~~~sG~~~~f~e----~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~ 294 (501)
T 1wle_A 224 GLVNFTLNKLIHR---GFTPMT--VPDLLRGVVFEGCGMTPNAKP----SQIYNIDPSRFEDLNLAGTAEVGLAGYFMDH 294 (501)
T ss_dssp HHHHHHHHHHHHT---TCEEEE--CCSEECHHHHHHHTCCSSSSS----CSSCBBCTTTSSSCEECSSHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHc---CCEEEe--CCccccHHHHHhhcCCCccCc----cccEEEecCCCCeEEECCcCcHHHHHHHhhc
Confidence 3444445555555 999996 787755555555442 21110 0223332 355788877777777775
Q ss_pred ------cCCeEEEEeeEEecCCC---CC---CCCcceEEEEEEEEEecC-CccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 ------EHNHFLVTGDVYRRDSI---DS---THYPVFHQMEGVSIFYPD-EWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~---d~---~~~p~f~q~~g~~~~~~~-~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.+||.... +. .-.-.|.+.++.....++ + .....+..+....+.++..|++
T Consensus 295 i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e-------~s~~~~e~~l~~~~~il~~LgL 367 (501)
T 1wle_A 295 SVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE-------QSSELLEEFLSLQMEILTELGL 367 (501)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH-------HHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH-------HHHHHHHHHHHHHHHHHHHCCC
Confidence 58999999999997643 11 112356778887766542 1 0122357788888999999987
Q ss_pred cceeEEeecc-CCCCCC-C--ceEEEEEC--CeeEEEeeeeeccHHHHHHcCCCCc--------e--EEEEEechhHHHH
Q 014218 240 AVEMRWVDTY-FPFTNP-S--YELEIFFK--ENWLEVLGCGVTEQEILKRSGKLNN--------V--AWAFGLGLERLAM 303 (428)
Q Consensus 240 ~~~~~~~~~~-~p~~hP-g--~~a~I~~~--g~~iGvlG~G~ihP~vl~~~gi~~~--------v--~~afEL~Le~L~m 303 (428)
+ ++.+... -....+ . ...++|.. +.|.++..|...-.--.+++++... + ...-++.++|+..
T Consensus 368 p--yrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~R~l~ 445 (501)
T 1wle_A 368 H--FRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLI 445 (501)
T ss_dssp C--EEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHHHHHH
T ss_pred c--EEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHHHHHH
Confidence 5 4443211 011111 1 24556664 3477776664333233566776421 1 1234567899765
Q ss_pred hh
Q 014218 304 VL 305 (428)
Q Consensus 304 ~~ 305 (428)
.+
T Consensus 446 al 447 (501)
T 1wle_A 446 AL 447 (501)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 53
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=95.07 E-value=0.092 Score=53.02 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhc-CCCCCCcccccccccc----ccCCcccccchhHHHHHH
Q 014218 96 HPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDV-LVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 96 hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L-~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~ 170 (428)
.-.+.+.+.|++.|... ||+|+. +|++...+.|..- |-.-|+.. . ..+. ..+.-+||+-+++.....
T Consensus 19 ~~~~~i~~~i~~~~~~~---G~~ei~--tP~le~~el~~~~~G~~~d~~~-~--em~~~~D~~g~~l~Lrpd~t~~~aR~ 90 (423)
T 1htt_A 19 AIWQRIEGTLKNVLGSY---GYSEIR--LPIVEQTPLFKRAIGEVTDVVE-K--EMYTFEDRNGDSLTLRPEGTAGCVRA 90 (423)
T ss_dssp HHHHHHHHHHHHHHHTT---TCEECB--CCSEEEHHHHHHHHCSSSHHHH-H--TCEEEECTTSCEEEECSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---CCEEec--ccccCHHHHHhhccCCchhhhh-h--heEEEEcCCCCEEEeCCCchHHHHHH
Confidence 34578888999999888 999996 8888665555432 21101100 0 1111 235568999888887765
Q ss_pred Hh-------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 171 LK-------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 171 l~-------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.. .++++|.+|.|||.+......+..|+|..+- ++..+. ...+. ++..++..++..+++
T Consensus 91 ~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e-~~g~~~--------~~ad~-e~i~~~~~~l~~lgl 156 (423)
T 1htt_A 91 GIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCE-VFGLQG--------PDIDA-ELIMLTARWWRALGI 156 (423)
T ss_dssp HHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEE-EESCCS--------HHHHH-HHHHHHHHHHHHHTC
T ss_pred HHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEE-EECCCC--------chhhH-HHHHHHHHHHHHCCC
Confidence 53 4899999999999764444456677765443 332111 12232 445666777788876
No 54
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=94.93 E-value=0.18 Score=51.12 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cCCCCCCcccccccccc----ccCCcccccchhHHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l 171 (428)
-.+.+.+.|++.|... ||+|+. +|++...+.|.. .|- . ... ..+. ..+.-+||+-+++......
T Consensus 22 ~~~~i~~~i~~~~~~~---G~~ei~--tP~le~~el~~~~~G~---~-~~~--em~~~~D~~g~~l~LrPd~t~~~aR~~ 90 (434)
T 1wu7_A 22 VEKFIFKTAEEAAEAF---GFRRID--FPSLEYLDLYRIKSGE---E-LLQ--QTYSFVDKGGREVTLIPEATPSTVRMV 90 (434)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECB--CCSEEETHHHHTTSCT---T-GGG--GSCEEECTTSCEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCEEee--ccccccHHHhhhccCC---c-ccc--ceEEEECCCCCEEEeCCCChHHHHHHH
Confidence 4567888899999888 999996 898866555554 221 1 111 1222 2345689998888877776
Q ss_pred h------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 172 K------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 172 ~------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
. .|+++|.+|.|||.+......+..|+|..+ -++.... ...| .++..++..+++.++.+
T Consensus 91 ~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~-ei~g~~~--------~~ad-~E~i~~~~~~l~~lgl~ 155 (434)
T 1wu7_A 91 TSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNA-DIFGSDS--------PEAD-AEVIALASSILDRLGLQ 155 (434)
T ss_dssp TTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEE-EEESCCS--------HHHH-HHHHHHHHHHHHHTTTT
T ss_pred HhcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeE-EEEcCCC--------hHhh-HHHHHHHHHHHHHcCCC
Confidence 4 378999999999966443445667776544 3432211 1222 24556666777777763
No 55
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=94.91 E-value=0.1 Score=53.68 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHHHHHHHh
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAHQAELLK 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ll~~l~ 172 (428)
-.+.+.+.|++.|... ||.|+. +|++...+.|..- ..|-... ..|.. .+.-+||+-++|.......
T Consensus 45 ~~~~i~~~i~~~~~~~---Gy~eI~--tP~lE~~el~~~~---~G~~~~~--~my~f~D~~g~~l~LRpd~T~~~aR~~~ 114 (456)
T 3lc0_A 45 CRRHLFDVFHATAKTF---GFEEYD--APVLESEELYIRK---AGEEITE--QMFNFITKGGHRVALRPEMTPSLARLLL 114 (456)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECC--CCSEEEGGGGCCC---SCCHHHH--TCEEEECSSSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC---CCEEEE--CCcEeehhhhccc---cccchhh--ceEEEEcCCCCEEecCCcCHHHHHHHHH
Confidence 4567888888888887 999996 8887544444321 1111111 22222 3446899999998887764
Q ss_pred -------cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEE
Q 014218 173 -------EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSI 205 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~ 205 (428)
.+.++|.+|.|||.+......+..|+|..+-.+
T Consensus 115 ~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~ 154 (456)
T 3lc0_A 115 GKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIV 154 (456)
T ss_dssp HSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEE
T ss_pred hcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEE
Confidence 389999999999976544456778888755444
No 56
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=94.87 E-value=0.54 Score=48.53 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcc-CCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc---cCCcccccchhHHHHHHHh--
Q 014218 99 GILKNAIYEYFDSN-YPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV---DSQTVLRCHTSAHQAELLK-- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~-~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~---~e~~~LRtsL~~~ll~~l~-- 172 (428)
..+.+.|.+++... ...||+|+. +|.+...+.+..-|-.+.. ..+-|.. ++..+|+++--+.+.+..+
T Consensus 208 arL~~aL~~f~~d~~~~~Gy~eV~--~P~lv~~~l~~~sG~~~~f----~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~ 281 (484)
T 3lss_A 208 VQLQVALVSYSLDFLVKRGYTPFY--PPFFLNRDVMGEVAQLSQF----DEELYQVSGDGDKKYLIATSEMPIAAYHRGR 281 (484)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEE--CCSEEEHHHHHHHSCHHHH----HHTCCEEESSSSCEEECSSTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEe--cCccccHHHHHhcCCcccc----cccceEeecCCcceEEeccCcHHHHHHHhcc
Confidence 34555555544321 112999996 7776544433333321100 0012222 2344666555555566654
Q ss_pred ------cCCeEEEEeeEEecCCCC---C-C---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 ------EHNHFLVTGDVYRRDSID---S-T---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 ------~~~~~FEiG~Vyr~d~~d---~-~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.+||..... . . ..-.|++.++.....+++ +...-.+..+....+.++..|++
T Consensus 282 i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~------~~s~~e~e~~~~~~e~il~~LGL 355 (484)
T 3lss_A 282 WFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQ------EESWRHLEDMITTSEEFNKSLGL 355 (484)
T ss_dssp EESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSST------THHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcch------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999965421 1 1 223577777776654332 00122357788888999999987
Q ss_pred cceeEEeec--cCCCCCCCc--eEEEEEC--CeeEEEeee
Q 014218 240 AVEMRWVDT--YFPFTNPSY--ELEIFFK--ENWLEVLGC 273 (428)
Q Consensus 240 ~~~~~~~~~--~~p~~hPg~--~a~I~~~--g~~iGvlG~ 273 (428)
+ ++.+.. ....+.-.. .+++|.- +.|.++..|
T Consensus 356 p--yrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~ 393 (484)
T 3lss_A 356 P--YRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSC 393 (484)
T ss_dssp C--EEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEE
T ss_pred c--EEEEEcCCcccCCchhheechheecCCCCCeeEEEEe
Confidence 4 554332 111111122 3466663 457777665
No 57
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=94.85 E-value=0.33 Score=51.03 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc----ccCCcccccchhHHHHHHHh-
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY----VDSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~----~~e~~~LRtsL~~~ll~~l~- 172 (428)
.+.+.+.+++.|... ||+|+. +|++...+-|..-|- -++. .. ..|. .++.-+||+...++....++
T Consensus 50 ~~~i~~~~~~~~~~~---G~~ei~--tP~l~~~~l~~~sG~-~~~~-~~--~m~~~~d~~~~~~~LrP~~~~~~~~~~~~ 120 (572)
T 2j3l_A 50 LEKLKTIMREEFEKI---DAVEML--MPALLPAELWKESGR-YETY-GP--NLYRLKDRNDRDYILGPTHEETFTELIRD 120 (572)
T ss_dssp HHHHHHHHHHHHHTT---TCEECB--CCSEEETHHHHHHSH-HHHS-CT--TSCEEECTTCCEEEECSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCEEEE--CCccccHHHHHhcCC-cccc-ch--heEEEecCCCCeEEEccccHHHHHHHHHh
Confidence 356777778888776 999996 888755544543321 0000 00 1121 23567899999888777664
Q ss_pred -------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 173 -------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 173 -------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
.|++++++|.|||.+..... .+..|+|..+-.+..... .....+..+......++..|+++
T Consensus 121 ~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~-------~~~~e~~~~~~~~~~~~~~lgl~ 191 (572)
T 2j3l_A 121 EINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEA-------SLDQSYRDYEKAYSRIFERCGLE 191 (572)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHH-------HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHH-------HHHHHHHHHHHHHHHHHHHcCCc
Confidence 47999999999996543211 356788887765543111 01112234556777888888875
No 58
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=94.79 E-value=0.87 Score=47.41 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred HHHHHHHHHHH----hccCCCCcEEEccCCCccCchhhhhhcCCCC---CCcccccccc-----ccccCCcccccchhHH
Q 014218 99 GILKNAIYEYF----DSNYPNKFNKFDDLCPIVSVKQNFDDVLVPA---DHVSRSYNDT-----YYVDSQTVLRCHTSAH 166 (428)
Q Consensus 99 ~~l~~~I~~~l----~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~---dhp~r~~~~n-----p~~~e~~~LRtsL~~~ 166 (428)
..+.+.|.+++ ... ||+|+. +|.+...+.+..-|--+ +..-++.... .-.++..+|+++--+.
T Consensus 201 arL~raL~~f~~d~~~~~---Gy~EV~--~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~ 275 (522)
T 3vbb_A 201 VFLEQALIQYALRTLGSR---GYIPIY--TPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQP 275 (522)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCEEEE--CCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHH
T ss_pred HHHHHHHHHHHHHHHHHc---CCEEEE--CCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHH
Confidence 34444554444 444 999996 78775555444433211 1111110000 0012345677665555
Q ss_pred HHHHHh--------cCCeEEEEeeEEecCCCC----CC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHH
Q 014218 167 QAELLK--------EHNHFLVTGDVYRRDSID----ST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLE 231 (428)
Q Consensus 167 ll~~l~--------~~~~~FEiG~Vyr~d~~d----~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le 231 (428)
+.+..+ .|++++++|.+||..... .. ..-.|.+.++..+..+++ +...-.+..+....+
T Consensus 276 l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~------e~s~~e~e~ml~~~e 349 (522)
T 3vbb_A 276 IAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHD------NKSWEMFEEMITTAE 349 (522)
T ss_dssp HHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSST------THHHHHHHHHHHHHH
T ss_pred HHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCCh------HHHHHHHHHHHHHHH
Confidence 666554 589999999999975531 11 223567777776654332 001223567888888
Q ss_pred HHHHHhcccceeEEeec--cCCCCCCC--ceEEEEEC--CeeEEEeee
Q 014218 232 GLARHLFGAVEMRWVDT--YFPFTNPS--YELEIFFK--ENWLEVLGC 273 (428)
Q Consensus 232 ~Ll~~L~~~~~~~~~~~--~~p~~hPg--~~a~I~~~--g~~iGvlG~ 273 (428)
.++..|+++ ++.+.. ....+.-. ..+++|.- +.|.++..|
T Consensus 350 ~il~~LGLp--yrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsSc 395 (522)
T 3vbb_A 350 EFYQSLGIP--YHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSC 395 (522)
T ss_dssp HHHHHTTCC--EEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHcCCc--eEEEEcCCccCCCchhheeceeEecCCCCceeEEEEe
Confidence 999998875 444321 11111112 23566663 457777765
No 59
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=94.65 E-value=0.3 Score=49.77 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cCCCCCCccccccccccccCCcccccchhHHHHHHHh----
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---- 172 (428)
.+.+.+.+++.|... ||+|+. +|++...+.|.. .+-..+..-+. .. -..+.-+||+=+++.....+.
T Consensus 31 ~~~i~~~~~~~~~~~---Gy~eI~--tP~le~~el~~~~~g~~~~~~y~f--~D-~~g~~l~LRPd~T~~~aR~~~~~~~ 102 (464)
T 4g84_A 31 REKVFDVIIRCFKRH---GAEVID--TPVFELKETLMGKYGEDSKLIYDL--KD-QGGELLSLRYDLTVPFARYLAMNKL 102 (464)
T ss_dssp HHHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHTTSCC----CCCBB--CC-CSSCCEEECSCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHC---CCeEEE--CcccCcHHHhccccCcCcceeEEE--EC-CCCCEEEeCCcCcHHHHHHHHhcCC
Confidence 467888888888887 999996 898865554432 11111111111 01 133456899988887776553
Q ss_pred cCCeEEEEeeEEecCCCC--CCCCcceEEEEEEEE
Q 014218 173 EHNHFLVTGDVYRRDSID--STHYPVFHQMEGVSI 205 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~d--~~~~p~f~q~~g~~~ 205 (428)
.++++|.+|.|||.+... ...+..|+|...=.+
T Consensus 103 ~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~ 137 (464)
T 4g84_A 103 TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 137 (464)
T ss_dssp SCEEEEEEEEEECCCC------CCSEEEEEEEEEE
T ss_pred CCceeEEEecceeccCCccccCccceeeecceecc
Confidence 689999999999965421 224567777644333
No 60
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=94.63 E-value=0.22 Score=51.83 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cCCCCCCccccccccccccCCcccccchhHHHHHHHh----
Q 014218 98 IGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK---- 172 (428)
Q Consensus 98 l~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~---- 172 (428)
.+.+.+.|++.|... ||.|+. +|++...+.|.. .+-..+..-+. .. ...+.-+||+-+++.....+.
T Consensus 84 ~~~ie~~i~~~~~~~---Gy~eI~--tP~lE~~el~~~~~ge~~~~my~f--~D-~~g~~l~LRPd~T~~~aR~~~~~~~ 155 (517)
T 4g85_A 84 REKVFDVIIRCFKRH---GAEVID--TPVFELKETLMGKYGEDSKLIYDL--KD-QGGELLSLRYDLTVPFARYLAMNKL 155 (517)
T ss_dssp HHHHHHHHHHHHHHH---TCEECB--CCSEEEHHHHHCC------CSCBB--CC-TTSCCEEECSCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHC---CCeEEE--CcccCcHHHhhcccCcCcceeEEE--EC-CCCCEEEeCCcCcHHHHHHHHhCCC
Confidence 467778888888887 999996 898865554432 11111111111 00 123456899988887776653
Q ss_pred cCCeEEEEeeEEecCCCC--CCCCcceEEEEEEEE
Q 014218 173 EHNHFLVTGDVYRRDSID--STHYPVFHQMEGVSI 205 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~d--~~~~p~f~q~~g~~~ 205 (428)
.++++|.+|.|||.+... ...+..|+|...=.+
T Consensus 156 ~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~ 190 (517)
T 4g85_A 156 TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 190 (517)
T ss_dssp SCEEEEEEEEEECCCC-------CCEEEEEEEEEE
T ss_pred CCceeEEEeceEeccCcccccCccceeeeeceecc
Confidence 689999999999976431 124667887654433
No 61
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=94.62 E-value=0.63 Score=48.29 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=104.4
Q ss_pred ChH-HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhh-cC----CCCCCcccccccc-ccccCCcccccchhHHHH
Q 014218 96 HPI-GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDD-VL----VPADHVSRSYNDT-YYVDSQTVLRCHTSAHQA 168 (428)
Q Consensus 96 hPl-~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~-L~----~p~dhp~r~~~~n-p~~~e~~~LRtsL~~~ll 168 (428)
.|. ..+.+.|.+++...+..||+|+. +|++...+.|.. .| +.+ .--+..... --.++.-+||+...+++.
T Consensus 67 ~P~g~~l~~~i~~~~~~~~~~G~~ei~--tP~l~~~~l~~~~sG~~~~f~~-emy~~~d~g~~~~~~~l~LrPt~e~~i~ 143 (501)
T 1nj1_A 67 MPHGFMIRKNTLKILRRILDRDHEEVL--FPLLVPEDELAKEAIHVKGFED-EVYWVTHGGLSKLQRKLALRPTSETVMY 143 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCEECC--CCSEEEHHHHTTSHHHHHHTTT-TCCEEEEETTEEEEEEEEECSSSHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHcCCEEEe--cCcEecHHHHhcccCCcccCCc-ceEEEecCCCcccCCeeEEccCCCHHHH
Confidence 443 44556666665443322999996 888765554432 11 111 111110000 001245689988888877
Q ss_pred HHHh--------cCCeEEEEeeEEecCCCC-CC--CCcceE-EEEEEEEE-ecCCccccCcccccccHHHHHHHHHHHHH
Q 014218 169 ELLK--------EHNHFLVTGDVYRRDSID-ST--HYPVFH-QMEGVSIF-YPDEWGAAGLDATEYAAKDLKRCLEGLAR 235 (428)
Q Consensus 169 ~~l~--------~~~~~FEiG~Vyr~d~~d-~~--~~p~f~-q~~g~~~~-~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~ 235 (428)
...+ .|++++.+|.|||.+..+ .. -+..|+ |.++-..+ .+++ ....+..+....+.++.
T Consensus 144 ~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~--------a~~e~~~~l~~~~~i~~ 215 (501)
T 1nj1_A 144 PMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASE--------AEEQVERAVEIYKEFFN 215 (501)
T ss_dssp HHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHH--------HHHHHHHHHHHHHHHHH
Confidence 7764 479999999999976542 11 345788 88765433 2111 11223456777888889
Q ss_pred HhcccceeEEeeccCCCCCC--CceEEEEE-CCeeEEEeeeeeccHHHHHHcCCCC--------ce-EEEEEechhHHHH
Q 014218 236 HLFGAVEMRWVDTYFPFTNP--SYELEIFF-KENWLEVLGCGVTEQEILKRSGKLN--------NV-AWAFGLGLERLAM 303 (428)
Q Consensus 236 ~L~~~~~~~~~~~~~p~~hP--g~~a~I~~-~g~~iGvlG~G~ihP~vl~~~gi~~--------~v-~~afEL~Le~L~m 303 (428)
.|++++.+...+....+... .+.+++++ +|+++++-.|-.+.....+.+|+.. .+ ...++++ +|+..
T Consensus 216 ~Lgl~~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gig-eRli~ 294 (501)
T 1nj1_A 216 SLGIPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLS-DRVIA 294 (501)
T ss_dssp HHTCCCEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEC-THHHH
T ss_pred HCCCeEEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHH-HHHHH
Confidence 99876333222211112111 13456655 4555444222223345566666631 11 2456777 99876
Q ss_pred hh
Q 014218 304 VL 305 (428)
Q Consensus 304 ~~ 305 (428)
.+
T Consensus 295 al 296 (501)
T 1nj1_A 295 SV 296 (501)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 62
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=94.57 E-value=1.4 Score=45.80 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=66.4
Q ss_pred CcccccchhHHH----HHHHh-----cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccH
Q 014218 156 QTVLRCHTSAHQ----AELLK-----EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAA 223 (428)
Q Consensus 156 ~~~LRtsL~~~l----l~~l~-----~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f 223 (428)
.-+||+-+.++. .+.++ .|++++++|.+||.+..... -+..|+|.++-....+++ ..-.+
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~--------~~~~~ 253 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGE--------DEYWH 253 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGG--------HHHHH
T ss_pred ceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHH--------HHHHH
Confidence 347999888877 22222 58999999999986532221 346788888874443322 11125
Q ss_pred HHHHHHHHHHHHHhccc-ceeEEee---ccCC-CCCCCceEEEEECCeeEEEeee
Q 014218 224 KDLKRCLEGLARHLFGA-VEMRWVD---TYFP-FTNPSYELEIFFKENWLEVLGC 273 (428)
Q Consensus 224 ~dLKg~Le~Ll~~L~~~-~~~~~~~---~~~p-~~hPg~~a~I~~~g~~iGvlG~ 273 (428)
..+......++..|+++ ..++... ..+. +-.-.+..+++....|.+..||
T Consensus 254 ~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~ 308 (505)
T 1ati_A 254 RYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGI 308 (505)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhh
Confidence 67778888889999875 2233332 1111 1111134677777778878776
No 63
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=94.30 E-value=0.17 Score=51.89 Aligned_cols=129 Identities=5% Similarity=-0.097 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCC---CCCCccccccccccccCCcccccc---hhHHHHHH
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLV---PADHVSRSYNDTYYVDSQTVLRCH---TSAHQAEL 170 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~---p~dhp~r~~~~np~~~e~~~LRts---L~~~ll~~ 170 (428)
..+.+.+.+++.|... ||+|+. +|++...+-|..-+- -.+.-.+.. -..++.-+||+. +++.+...
T Consensus 69 ~~~~i~~~ir~~~~~~---G~~ei~--tP~l~~~el~~~sg~~d~~~~em~~~~---d~~~~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 69 VLKKIEQIVREEQNRA---GAIELL--MPTLQLADLWRESGRYDAYGPEMLRIA---DRHKRELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHHHHTHHHHSCTTSEEEE---CTTCCEEEECSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCEEEE--cCccCcHHHHHhcCCccccccceEEEE---eCCCCeEEECCCChHHHHHHHHH
Confidence 4567888888888877 999996 888866555544331 001111110 012345689993 34433333
Q ss_pred H-h----cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhccc
Q 014218 171 L-K----EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA 240 (428)
Q Consensus 171 l-~----~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~ 240 (428)
. + .|+++|.+|+|||.+..... .+..|+|..+-.+..... .....+..+......++..|+++
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~-------~ad~e~~~~~~~~~~i~~~lGl~ 211 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEA-------GARKSYNKMFVAYLRTFARMGLK 211 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHH-------HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHH-------HHHHHHHHHHHHHHHHHHHcCCc
Confidence 2 2 58999999999986522221 457888877765532111 01112334556677888888764
No 64
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=94.19 E-value=0.58 Score=48.80 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=80.0
Q ss_pred cCCcccccchhHHHHHHHh--------cCCeEEE-EeeEEecCCCCC----CCCcceEEEEEEEEEecCCccccCccccc
Q 014218 154 DSQTVLRCHTSAHQAELLK--------EHNHFLV-TGDVYRRDSIDS----THYPVFHQMEGVSIFYPDEWGAAGLDATE 220 (428)
Q Consensus 154 ~e~~~LRtsL~~~ll~~l~--------~~~~~FE-iG~Vyr~d~~d~----~~~p~f~q~~g~~~~~~~~w~~~~~~~~~ 220 (428)
++..+||+..-+++...++ .|++++. +|.+||.. ... ..+-.|+|+++.....+++ ..
T Consensus 316 ~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~--------s~ 386 (522)
T 2cja_A 316 EPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEE--------VL 386 (522)
T ss_dssp CCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHH--------HH
T ss_pred CCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHH--------HH
Confidence 4567899888777666664 4889999 99999976 321 2356789998887654322 11
Q ss_pred ccHHHHH-HHHHHHHHHhcccceeEEeeccCCCC--CC---------C-c--eEEEEE-----CCeeEEEeeeeeccHHH
Q 014218 221 YAAKDLK-RCLEGLARHLFGAVEMRWVDTYFPFT--NP---------S-Y--ELEIFF-----KENWLEVLGCGVTEQEI 280 (428)
Q Consensus 221 ~~f~dLK-g~Le~Ll~~L~~~~~~~~~~~~~p~~--hP---------g-~--~a~I~~-----~g~~iGvlG~G~ihP~v 280 (428)
..+..+. ...+.++..|+++ .+.. +..+++ .. + . ..+++. .|+++++--|......-
T Consensus 387 ee~ee~i~~~~~~~l~~LGLp-~v~~--~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~q 463 (522)
T 2cja_A 387 KCAEELHDRYMHIFNDILDIE-WRKA--RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKY 463 (522)
T ss_dssp HHHHHHHHHHHHHHHHTSCCC-EEEE--EC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-EEee--ccCCccccccccccchhccccceEEEEEecccccCCCcEEEEeeechhhhhc
Confidence 1234455 6667778888876 3322 233554 11 1 2 333443 24445544344334445
Q ss_pred HHHcCCCCc----e-EEEEEechhHHHHhhc
Q 014218 281 LKRSGKLNN----V-AWAFGLGLERLAMVLF 306 (428)
Q Consensus 281 l~~~gi~~~----v-~~afEL~Le~L~m~~~ 306 (428)
.+++++..+ + ....+++++|+...++
T Consensus 464 arr~~Ir~~~~~~vht~~~Glgv~Rli~AlL 494 (522)
T 2cja_A 464 PKGFNVKLQSGDELWSGCSGVGLERWAAVFL 494 (522)
T ss_dssp HHHHTCEETTCCCEEEEEEEEEHHHHHHHHH
T ss_pred ccccceEcCCCCEEEEeccCcHHHHHHHHHH
Confidence 667777431 1 1245778899865543
No 65
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=94.10 E-value=0.35 Score=49.66 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc---cCCcccccchhHHHHHHHh-
Q 014218 97 PIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV---DSQTVLRCHTSAHQAELLK- 172 (428)
Q Consensus 97 Pl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~---~e~~~LRtsL~~~ll~~l~- 172 (428)
-.+.+.+.+++.|... ||+|+. +|++...+.|..-+ .-++.. . ..|.. .+.-+||+...++....++
T Consensus 51 ~~~~i~~~~~~~~~~~---G~~ei~--tP~l~~~~l~~~sg-~~~~~~-~--emy~~d~~~~~l~LRP~~t~~i~~~~~~ 121 (471)
T 3a32_A 51 IRYALAEVLAKFHARR---GYYVVE--TPIIASTELFKVSG-HIEFYR-N--NMYLFDIEGHEFAVKPMNCPYHILLFLN 121 (471)
T ss_dssp HHHHHHHHHHHHHHHT---TCEECC--CCSEEETHHHHHTC-CCTTGG-G--GSEEEEETTEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCEEEE--CCeeeehHHhhhcc-Cccccc-c--ceEEEecCCcEEEEccccHHHHHHHHHh
Confidence 3566777777888776 999996 88887666665543 111111 0 12222 3456899998888766553
Q ss_pred ----------cCCeEEEEeeEEecCCCC--CC--CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHH-h
Q 014218 173 ----------EHNHFLVTGDVYRRDSID--ST--HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARH-L 237 (428)
Q Consensus 173 ----------~~~~~FEiG~Vyr~d~~d--~~--~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~-L 237 (428)
.|++++.+|.|||.+... .. .+..|+|..+-.+..++. ..-.+.++......++.. |
T Consensus 122 ~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~--------~~de~~e~i~~~~~~l~~~l 193 (471)
T 3a32_A 122 EVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGR--------VIDVVYDVFEEMKLVLERLF 193 (471)
T ss_dssp HHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGG--------HHHHHHHHHHHHHHHHHHTS
T ss_pred hhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 268999999999976433 11 356788776655543221 111135677777888888 8
Q ss_pred cc
Q 014218 238 FG 239 (428)
Q Consensus 238 ~~ 239 (428)
++
T Consensus 194 Gl 195 (471)
T 3a32_A 194 KL 195 (471)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 66
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=94.05 E-value=0.12 Score=55.33 Aligned_cols=124 Identities=7% Similarity=0.043 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc---ccCCcccccchhHHHHHHHh---
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY---VDSQTVLRCHTSAHQAELLK--- 172 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~---~~e~~~LRtsL~~~ll~~l~--- 172 (428)
+.+.+.+++.+... ||+|+. +|++...+-|...|-- ++-. . +.|. .++.-+||+...|+....++
T Consensus 275 ~~l~~~~r~~~~~~---Gy~ev~--tP~l~~~~l~~~sGh~-~~~~-~--~my~~d~~~~~~~LrP~~~~~~~~~~~~~~ 345 (642)
T 1qf6_A 275 RELEVFVRSKLKEY---QYQEVK--GPFMMDRVLWEKTGHW-DNYK-D--AMFTTSSENREYCIKPMNCPGHVQIFNQGL 345 (642)
T ss_dssp HHHHHHHHHHHHHT---TCEECC--CCSEEETHHHHHHSHH-HHHG-G--GCEEEEETTEEEEECSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHc---CCEEEE--CCcCccHHHHhhcCcc-cccc-c--cceeeecCCceEEecCCCCHHHHHHHHhhh
Confidence 45566667777666 999996 8887655545433210 0000 0 1111 12345899998888877775
Q ss_pred -----cCCeEEEEeeEEecCCCCCC----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 -----EHNHFLVTGDVYRRDSIDST----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 -----~~~~~FEiG~Vyr~d~~d~~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.|++++++|.|||.+..... .+..|+|.++-....+++ ....+..+...+..++..|++
T Consensus 346 ~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~--------~~~e~~~~i~~~~~i~~~lGl 413 (642)
T 1qf6_A 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ--------IRDEVNGCIRLVYDMYSTFGF 413 (642)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHGGGTC
T ss_pred hhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHH--------HHHHHHHHHHHHHHHHHHcCC
Confidence 48999999999997654111 356788888766543221 111234456666777777776
No 67
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=93.77 E-value=0.95 Score=44.62 Aligned_cols=196 Identities=17% Similarity=0.141 Sum_probs=109.9
Q ss_pred CChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcC----CCCCCcccccc---------------------c
Q 014218 95 QHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVL----VPADHVSRSYN---------------------D 149 (428)
Q Consensus 95 ~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~----~p~dhp~r~~~---------------------~ 149 (428)
.-.-..|.+.|.+++......||+|+. .|.+-..+.+...| +|++ -..... .
T Consensus 60 ~g~~a~L~~aLe~~~~~~~~~Gy~ev~--~P~lv~~~~~e~SGhl~~F~e~-mf~v~~~~~d~~e~~~ll~~~~~~~~~~ 136 (346)
T 3mf2_A 60 TALYESIVERLAALITSHREAGTEALR--FPPVMSRAQLEKSGYLKSFPNL-LGCVCGLHGTEREINAAVSRFDAGGDWT 136 (346)
T ss_dssp EHHHHHHHHHHHHHHHHTCCTTCEEEE--CCSEEEHHHHHHTTHHHHCGGG-CEEEEEECSCHHHHHHHHHHHHTTSCGG
T ss_pred cchHHHHHHHHHHHHHhhHhcCCeEEE--CCCccCHHHHHhcCCcccChhh-cceeecccccchhhhhhhhhhccccccc
Confidence 334456777777777542224999997 55543344333332 1111 000000 0
Q ss_pred cccccCCcccccchhHHHHHHHh-------cCCeEEEEeeEEecCCC-CCCCCcceEEEEEEEEEecCCccccCcccccc
Q 014218 150 TYYVDSQTVLRCHTSAHQAELLK-------EHNHFLVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEY 221 (428)
Q Consensus 150 np~~~e~~~LRtsL~~~ll~~l~-------~~~~~FEiG~Vyr~d~~-d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~ 221 (428)
....++..+|.+.-=+.+.+..+ .++++.+.|.|||+... .....-.|++.+.+.+..+++ ...
T Consensus 137 ~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEq--------s~~ 208 (346)
T 3mf2_A 137 TSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDD--------VSD 208 (346)
T ss_dssp GGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHH--------HHH
T ss_pred cccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHH--------HHH
Confidence 11122334566555555555554 36899999999998653 222345688889888875433 122
Q ss_pred cHHHHHHHHHHHHHHhcccceeEEeeccCCCCCC--------------CceEEEEE--CCeeEEEeeeeeccHHHHHHcC
Q 014218 222 AAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNP--------------SYELEIFF--KENWLEVLGCGVTEQEILKRSG 285 (428)
Q Consensus 222 ~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hP--------------g~~a~I~~--~g~~iGvlG~G~ihP~vl~~~g 285 (428)
-...+...++.+++.|+++ ++......|++-. ...+++++ +|++.++--|--...--.++++
T Consensus 209 e~e~l~~~ae~il~~LgLp--yrv~~~~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfqarR~~ 286 (346)
T 3mf2_A 209 FRERWMVRAQAIARDLGLT--FRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWG 286 (346)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCC--EEEEEccCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchhhhhhc
Confidence 3467788888999999875 5544444465542 13444444 4566676655444444567777
Q ss_pred CCC----ce-EEEEEechhHHHH
Q 014218 286 KLN----NV-AWAFGLGLERLAM 303 (428)
Q Consensus 286 i~~----~v-~~afEL~Le~L~m 303 (428)
|+. .+ ....+++++|++.
T Consensus 287 Ir~~~~~~vHT~~sglav~R~l~ 309 (346)
T 3mf2_A 287 IQDANGEPAHTGCVAFGMDRLAV 309 (346)
T ss_dssp CBCTTSSBCEEEEEEEEHHHHHH
T ss_pred ceeCCCCeEEEcccchHHHHHHH
Confidence 743 12 1245678889754
No 68
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=93.46 E-value=0.38 Score=49.38 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=75.6
Q ss_pred HHHHHHHHHHH-hccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc------cCCcccccchhHHHHHHH
Q 014218 99 GILKNAIYEYF-DSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV------DSQTVLRCHTSAHQAELL 171 (428)
Q Consensus 99 ~~l~~~I~~~l-~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~------~e~~~LRtsL~~~ll~~l 171 (428)
+.+.+.+++.+ ... ||+|+. +|++...+.|..-|-- ++- .. +.|.. .+.-+||+...++....+
T Consensus 68 ~~l~~~~~~~~~~~~---Gy~ev~--tP~l~~~~l~~~sGh~-~~~-~~--emy~~~d~~~~~~~l~LrPt~~~~~~~~~ 138 (460)
T 3uh0_A 68 NKLIEFMKLQQKFKF---GFNEVV--TPLIYKKTLWEKSGHW-ENY-AD--DMFKVETTDEEKEEYGLKPMNCPGHCLIF 138 (460)
T ss_dssp HHHHHHHHHHHHHTS---CCEECC--CCSEEEHHHHHHHTCT-TTS-GG--GSCEECC------CEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CCEEEE--CCeeccHHHHHhcCCc-ccc-cc--ceEEEecCCCCCceEEEcccCcHHHHHHH
Confidence 45666666666 555 999996 8888666655544321 111 00 12221 345689988888877776
Q ss_pred h--------cCCeEEEEeeEEecCCCCCC----CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHH-HHhc
Q 014218 172 K--------EHNHFLVTGDVYRRDSIDST----HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLA-RHLF 238 (428)
Q Consensus 172 ~--------~~~~~FEiG~Vyr~d~~d~~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll-~~L~ 238 (428)
+ .|++++++|.|||......+ .+..|+|.++-.+..+++ ....+..+...+..++ +.|+
T Consensus 139 ~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~--------~~~e~~~~i~~~~~~~~~~lG 210 (460)
T 3uh0_A 139 GKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQ--------VKSEIFNSLKLIDIVYNKIFP 210 (460)
T ss_dssp TTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHTTTSC
T ss_pred HhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHH--------HHHHHHHHHHHHHHHHHHHcC
Confidence 4 48999999999997544311 356788888876543221 1112234556666677 6666
Q ss_pred cc
Q 014218 239 GA 240 (428)
Q Consensus 239 ~~ 240 (428)
++
T Consensus 211 l~ 212 (460)
T 3uh0_A 211 FV 212 (460)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 69
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=93.27 E-value=3.1 Score=42.91 Aligned_cols=164 Identities=14% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc----cCCcccccchhHHHHHHHh------
Q 014218 103 NAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV----DSQTVLRCHTSAHQAELLK------ 172 (428)
Q Consensus 103 ~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~----~e~~~LRtsL~~~ll~~l~------ 172 (428)
+-+++.+... ||+|+. .|.+...+.+..-|-.+ .-..+-|.. ++..++.|+-.|. ....+
T Consensus 193 ~~~~d~~~~~---Gy~eV~--~P~lv~~~l~~~sG~l~----~f~eemf~v~~~~~~~~LipTaE~pl-~~l~~~ei~~S 262 (485)
T 3qne_A 193 NYGLSFLSSK---GYVPLQ--APVMMNKEVMAKTAQLS----QFDEELYKVIDGEDEKYLIATSEQPI-SAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHTT---TCEEEE--CCSEEEHHHHHHHSCHH----HHTTTCCEEEETTEEEEECSSTHHHH-HHHTTTCEESS
T ss_pred HHHHHHHHHc---CCEEEe--CCccccHHHHhhcCCcc----ccccceEEEeCCCCeEEEeccccHHH-HHHHhcccccc
Confidence 3344444444 999996 77765544444333110 000012222 2344555665553 33333
Q ss_pred ----cCCeEEEEeeEEecCCCC----CC---CCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccc
Q 014218 173 ----EHNHFLVTGDVYRRDSID----ST---HYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAV 241 (428)
Q Consensus 173 ----~~~~~FEiG~Vyr~d~~d----~~---~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~ 241 (428)
.|++++++|.+||..... .. ..-.|.+.++..+..+++ ..-.+..+....+.++..|+++
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~--------s~~e~e~ml~~~e~il~~LgLp- 333 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEK--------SWEEFDRMIGCSEEFYQSLGLP- 333 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHHHTTCC-
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHH--------HHHHHHHHHHHHHHHHHHCCCc-
Confidence 379999999999865421 11 123567777776654322 1223577888889999998875
Q ss_pred eeEEeec--cCCCCCCC--ceEEEEEC--CeeEEEeeeeeccHHHHHHcCC
Q 014218 242 EMRWVDT--YFPFTNPS--YELEIFFK--ENWLEVLGCGVTEQEILKRSGK 286 (428)
Q Consensus 242 ~~~~~~~--~~p~~hPg--~~a~I~~~--g~~iGvlG~G~ihP~vl~~~gi 286 (428)
++.+.. ....+.-. ..+|+|.- +.+.++.+|--.-.--.++++|
T Consensus 334 -yrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~i 383 (485)
T 3qne_A 334 -YRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEI 383 (485)
T ss_dssp -EEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTC
T ss_pred -EEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccce
Confidence 444321 11111112 23466663 4577777653332333455555
No 70
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=93.17 E-value=0.6 Score=48.70 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCcccccccccc--------ccCCcccccchhHHHHHH
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYY--------VDSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~--------~~e~~~LRtsL~~~ll~~ 170 (428)
+.+.+.+++.+... ||+|+. +|++...+.|..- ..|.-....+-|. .++.-+||+..-+++...
T Consensus 59 ~~L~~~~~~~~~~~---Gy~eV~--tP~l~~~el~~k~---sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 59 NAIMRLCEEEYAKV---GISQIL--FPTVIPESFLKKE---SDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp HHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHTSS---HHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCEEEE--cccccCHHHHHhh---cCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 34555566666666 999986 8887544433210 0110000001111 134568998887777776
Q ss_pred Hh--------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEE-ecCCccccCcccccccHHHHHHHHHHHH-HHh
Q 014218 171 LK--------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIF-YPDEWGAAGLDATEYAAKDLKRCLEGLA-RHL 237 (428)
Q Consensus 171 l~--------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~-~~~~w~~~~~~~~~~~f~dLKg~Le~Ll-~~L 237 (428)
.+ .|++++++|.|||....... .+..|+|.++-... .+++ ....+..+....+.++ ..|
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~--------a~~e~~~~l~~~~~i~~~~L 202 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAED--------AVSQLSDYWKVIDTIFSDEL 202 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHH--------HHHHHHHHHHHHHHHHTTTT
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHH--------HHHHHHHHHHHHHHHHHHhc
Confidence 64 58999999999996532211 34567888876652 2111 1112334555567777 777
Q ss_pred cccceeEEeec--cCCCCCCCceEEEEEC-CeeEEEeeeeeccHHHHHHcCCCC--------ce-EEEEEechhHHHHh
Q 014218 238 FGAVEMRWVDT--YFPFTNPSYELEIFFK-ENWLEVLGCGVTEQEILKRSGKLN--------NV-AWAFGLGLERLAMV 304 (428)
Q Consensus 238 ~~~~~~~~~~~--~~p~~hPg~~a~I~~~-g~~iGvlG~G~ihP~vl~~~gi~~--------~v-~~afEL~Le~L~m~ 304 (428)
++++.....+. .++.-+-+..+++++. |+.+++-.+=.+.....+++++.. .+ -..+|++ +|+...
T Consensus 203 Glp~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~~-~R~iaa 280 (518)
T 3ial_A 203 CFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGIS-TRVLAC 280 (518)
T ss_dssp CCCCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEEE-THHHHH
T ss_pred CCcEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccchH-HHHHHH
Confidence 76533222221 1211122234566553 454443211223345567888742 12 1245665 887544
No 71
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=91.49 E-value=4.3 Score=42.21 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccc--------cCCcccccchhHHHHHH
Q 014218 99 GILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYV--------DSQTVLRCHTSAHQAEL 170 (428)
Q Consensus 99 ~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~--------~e~~~LRtsL~~~ll~~ 170 (428)
+.|.+.+++.+... ||+|+. +|++...+.|..- ..|.-......|.. ++.-+||+..-+++...
T Consensus 65 ~~L~~~~~~~~~~~---Gy~ev~--tP~l~~~~l~~k~---sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~ 136 (519)
T 4hvc_A 65 EAIKDFFDAEIKKL---GVENCY--FPMFVSQSALEKE---KTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPA 136 (519)
T ss_dssp HHHHHHHHHHHHHT---TCEECB--CCSEEEHHHHTTS---CCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCEEEe--ccccccHHHHhcc---cCCcccccccceEEeccCCcccccceeeCCCCcHHHHHH
Confidence 34455555555555 999986 8888656555531 12311111112222 23468998887777766
Q ss_pred Hh--------cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEE-ecCCccccCcccccccHHHHHHHHHHHHHHh-
Q 014218 171 LK--------EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIF-YPDEWGAAGLDATEYAAKDLKRCLEGLARHL- 237 (428)
Q Consensus 171 l~--------~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~-~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L- 237 (428)
.+ .|++++++|.|||....... -+..|+|.++-.++ .+++ ...-+..+....+.++..|
T Consensus 137 ~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~--------a~~E~~~~l~~~~~i~~~ll 208 (519)
T 4hvc_A 137 YAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEE--------AAEEVLQILDLYAQVYEELL 208 (519)
T ss_dssp HHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHH--------HHHHHHHHHHHHHHHHHTTS
T ss_pred HHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHH--------HHHHHHHHHHHHHHHHHHhc
Confidence 54 48999999999997632211 24568888877543 2111 1112344556666777776
Q ss_pred cccceeEEeeccCCCCC--CCceEEEEE--CCeeEEEeeeeeccHHHHHHcCCCC----------ceE-EEEEechhHHH
Q 014218 238 FGAVEMRWVDTYFPFTN--PSYELEIFF--KENWLEVLGCGVTEQEILKRSGKLN----------NVA-WAFGLGLERLA 302 (428)
Q Consensus 238 ~~~~~~~~~~~~~p~~h--Pg~~a~I~~--~g~~iGvlG~G~ihP~vl~~~gi~~----------~v~-~afEL~Le~L~ 302 (428)
+++..........-+.. -.+.++.+. .|+.+.+-.|-.+....-+.+++.. .|. -.++++ +|+.
T Consensus 209 ~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~-~R~l 287 (519)
T 4hvc_A 209 AIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT-TRTI 287 (519)
T ss_dssp CCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEE-THHH
T ss_pred CCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEEEEccccHH-HHHH
Confidence 44322111111111111 113456665 3554432111233345556666621 121 246676 8876
Q ss_pred Hhh
Q 014218 303 MVL 305 (428)
Q Consensus 303 m~~ 305 (428)
..+
T Consensus 288 ~al 290 (519)
T 4hvc_A 288 GVM 290 (519)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 72
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=87.49 E-value=0.77 Score=48.83 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=48.6
Q ss_pred CceEEEEECCeeEEEee-eeecc-HHH----HH-HcCCC--------------CceEEEEEechhHHHHhhcCCccchhc
Q 014218 256 SYELEIFFKENWLEVLG-CGVTE-QEI----LK-RSGKL--------------NNVAWAFGLGLERLAMVLFDIPDIRLF 314 (428)
Q Consensus 256 g~~a~I~~~g~~iGvlG-~G~ih-P~v----l~-~~gi~--------------~~v~~afEL~Le~L~m~~~~i~dirl~ 314 (428)
++.-+++++|. ++.| ..++| |++ .+ ..|++ -|---.+++|+|||.|++.|.+.||-
T Consensus 485 a~~ydlv~~g~--El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~ird- 561 (617)
T 4ah6_A 485 SQHYDLVLNGN--EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRD- 561 (617)
T ss_dssp CCCEEEEETTE--EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGG-
T ss_pred hceEEEEECCE--EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchhe-
Confidence 56789999995 4444 35565 333 22 22322 11113567889999999999888863
Q ss_pred cccchhhhhhcccCCCCccCCCCCCCCCcce--eeeEEecCCCCHHHHH
Q 014218 315 WSSDERFTSQFSQGQLGIKFKPFSKYPPCYK--DMSFWINESFTENNLC 361 (428)
Q Consensus 315 ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~R--DiSf~v~~~~~~~~i~ 361 (428)
+.-||...+ |+-.=.|..++..++.
T Consensus 562 ----------------------vi~fP~~~~~~d~~~~aP~~v~~~qL~ 588 (617)
T 4ah6_A 562 ----------------------VIAFPKSFRGHDLMSNTPDSVPPEELK 588 (617)
T ss_dssp ----------------------SSSSCCCSSSCCSSSCCSBCCCGGGTT
T ss_pred ----------------------EEecCCCCCccccccCCCCCCCHHHHH
Confidence 334555554 5555556666666553
No 73
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=87.20 E-value=1.1 Score=42.60 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=66.2
Q ss_pred HHHHHH--HHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh------
Q 014218 101 LKNAIY--EYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK------ 172 (428)
Q Consensus 101 l~~~I~--~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~------ 172 (428)
+.+.++ +.+... ||.|+. +|++...+.|.. | +. .| ...+.-.||+-++|+.. .-+
T Consensus 6 le~~~r~~~~~~~~---Gy~eI~--tP~le~~~l~~~-----d---~f-~d--~~g~~l~LRpd~T~~~a-~~~~~~~~~ 68 (275)
T 1usy_A 6 FEKVFSFYSKATKK---GFSPFF--VPALEKAEEPAG-----N---FF-LD--RKGNLFSIREDFTKTVL-NHRKRYSPD 68 (275)
T ss_dssp HHHHHHHHHHHHHT---TCEECC--CCSEEECSSCCS-----S---CE-EE--TTSCEEEECCCHHHHHH-HHHTTCTTC
T ss_pred HHHHHHHHHHHHHC---CCEEec--Cccccchhhhcc-----c---cc-CC--CCCCEEEeCCcChHHHH-HHHhhcCCC
Confidence 344444 888887 999996 888754333322 1 11 01 13456789999999888 322
Q ss_pred cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcc
Q 014218 173 EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFG 239 (428)
Q Consensus 173 ~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~ 239 (428)
.+.|++++|.|||.+.... ..|+|...=.+... . ...| .++-.++..+++.++.
T Consensus 69 ~p~R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~-~--------~~~D-aEvi~l~~~~l~~lgl 122 (275)
T 1usy_A 69 SQIKVWYADFVYRYSGSDL---VAEYQLGLEKVPRN-S--------LDDS-LEVLEIIVESASEFFE 122 (275)
T ss_dssp CCEEEECCEEEEEEETTEE---EEEEEEEEEEESCC-S--------HHHH-HHHHHHHHHHHHHHCC
T ss_pred CceEEEEeceEEecCCCCC---CeeeEeCEEEecCC-C--------chhH-HHHHHHHHHHHHHcCC
Confidence 2689999999999765322 56777544333221 1 1223 4555566667777765
No 74
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=83.72 E-value=21 Score=36.24 Aligned_cols=141 Identities=11% Similarity=-0.090 Sum_probs=72.5
Q ss_pred cCCcccccchhHHHHHHHh---------cCCeEEEEeeEEec--CCCCCCC----CcceEEEEEEEEEecCCccccCccc
Q 014218 154 DSQTVLRCHTSAHQAELLK---------EHNHFLVTGDVYRR--DSIDSTH----YPVFHQMEGVSIFYPDEWGAAGLDA 218 (428)
Q Consensus 154 ~e~~~LRtsL~~~ll~~l~---------~~~~~FEiG~Vyr~--d~~d~~~----~p~f~q~~g~~~~~~~~w~~~~~~~ 218 (428)
++.-+||+.+.++....++ .|.++.++|.+||. +++...+ ...|.|+++-....+++
T Consensus 134 ~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~-------- 205 (454)
T 1g5h_A 134 KTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRT-------- 205 (454)
T ss_dssp HHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHH--------
T ss_pred CcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhh--------
Confidence 3456899988877666553 58999999999996 5543221 24567777754443222
Q ss_pred ccccHHHHHHHHHHHHHHhccc-ceeEEeeccCCCCCCCceEEEEECCeeEEEeee-eeccHHHHH-----HcCCC----
Q 014218 219 TEYAAKDLKRCLEGLARHLFGA-VEMRWVDTYFPFTNPSYELEIFFKENWLEVLGC-GVTEQEILK-----RSGKL---- 287 (428)
Q Consensus 219 ~~~~f~dLKg~Le~Ll~~L~~~-~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~-G~ihP~vl~-----~~gi~---- 287 (428)
..-.+..+......++..|+++ ..++..+....--.-+..++......|.++-|| ....-++.. ++++.
T Consensus 206 ~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~~~~~a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d~ 285 (454)
T 1g5h_A 206 SSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDG 285 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSGGGEEEEEEECTTSCEEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCGGGSCEEET
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceeEEecCCHHHHHhcCCCcEEecCCCceEEEEecCCCHHHHHhccCCceeeEEEECC
Confidence 1112344455566677778774 234332210000111233444555555555554 222222321 23443
Q ss_pred ----CceEEEEEechhHHH
Q 014218 288 ----NNVAWAFGLGLERLA 302 (428)
Q Consensus 288 ----~~v~~afEL~Le~L~ 302 (428)
.|+++--.++++|+.
T Consensus 286 ~~~~~P~vi~~s~Gv~R~i 304 (454)
T 1g5h_A 286 RKNVVPCVLSVSGDVDLGT 304 (454)
T ss_dssp TEEECCEEEEEEEEHHHHH
T ss_pred CCcEeeEEEeCcccHHHHH
Confidence 144455688999985
No 75
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=82.43 E-value=10 Score=38.73 Aligned_cols=137 Identities=11% Similarity=-0.119 Sum_probs=80.0
Q ss_pred cccccchhHHHHHHHh---------cCCeEEEEeeEEecCC--CCCC----CCcceEEEEEEEEEecCCccccCcccccc
Q 014218 157 TVLRCHTSAHQAELLK---------EHNHFLVTGDVYRRDS--IDST----HYPVFHQMEGVSIFYPDEWGAAGLDATEY 221 (428)
Q Consensus 157 ~~LRtsL~~~ll~~l~---------~~~~~FEiG~Vyr~d~--~d~~----~~p~f~q~~g~~~~~~~~w~~~~~~~~~~ 221 (428)
..||+.+.++.+-.++ .|+++-++|.+||... +... -...|.|+++.....+++ ..-
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~--------~~e 218 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRT--------SNQ 218 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGG--------HHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhH--------HHH
Confidence 7999999998887774 4899999999999863 2221 235678888876554433 111
Q ss_pred cHHHHHHHHHHHHHHhccc-ceeEEeec-cCCCCCCCceEEEEECCeeEEEeee-eeccHHHHHHc---C--C------C
Q 014218 222 AAKDLKRCLEGLARHLFGA-VEMRWVDT-YFPFTNPSYELEIFFKENWLEVLGC-GVTEQEILKRS---G--K------L 287 (428)
Q Consensus 222 ~f~dLKg~Le~Ll~~L~~~-~~~~~~~~-~~p~~hPg~~a~I~~~g~~iGvlG~-G~ihP~vl~~~---g--i------~ 287 (428)
-+..+....+.++..|+++ ..+++.+. ... -.-...++.++...|.++-|| -...-++.... + + +
T Consensus 219 ~~~~~~~~~~~~~~~LGi~~~~~r~~~~~~ee-A~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~dg~~ 297 (459)
T 3ikl_A 219 WLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEE-GRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRK 297 (459)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGEEEEEECCSS-SSCEEEEEEECSSCEEEEEEEEEEETHHHHHHSCSCSSSSCCBSSSC
T ss_pred HHHHHHHHHHHHHHHhCCChhhEEEeecCchH-HHhhcCeEEEcCCceEEEeeeeccchhhhhccccccCceeEccCCCe
Confidence 2456677777788888874 23444321 111 122345566666667778775 22333443321 1 1 1
Q ss_pred --CceEEEEEechhHHH
Q 014218 288 --NNVAWAFGLGLERLA 302 (428)
Q Consensus 288 --~~v~~afEL~Le~L~ 302 (428)
.|++.--.++++|+.
T Consensus 298 k~~P~vi~~s~Gv~R~~ 314 (459)
T 3ikl_A 298 NVVPCVLSVNGDLDRGM 314 (459)
T ss_dssp BCCCEEEEEEEEHHHHH
T ss_pred eeeeEEEEecccHHHHH
Confidence 134455688899964
No 76
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=77.43 E-value=59 Score=34.88 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=39.5
Q ss_pred cccCCcccccchhHHH----HHHHh-----cCCeEEEEeeEEecCCCCCC---CCcceEEEEEEEEEecC
Q 014218 152 YVDSQTVLRCHTSAHQ----AELLK-----EHNHFLVTGDVYRRDSIDST---HYPVFHQMEGVSIFYPD 209 (428)
Q Consensus 152 ~~~e~~~LRtsL~~~l----l~~l~-----~~~~~FEiG~Vyr~d~~d~~---~~p~f~q~~g~~~~~~~ 209 (428)
.....-.||+=+.++. ...++ .|++++++|.+||..-.... -+..|+|+++-....++
T Consensus 235 ~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~ 304 (693)
T 2zt5_A 235 GGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPS 304 (693)
T ss_dssp SSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTT
T ss_pred CCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcc
Confidence 3456778999999888 33332 68999999999986422221 35788888876555443
No 77
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=73.52 E-value=11 Score=39.61 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=36.1
Q ss_pred ceEEEEECCeeEEEee-eeecc-HH----------------------HHHH--cCCCCceEEEEEechhHHHHhhcCCcc
Q 014218 257 YELEIFFKENWLEVLG-CGVTE-QE----------------------ILKR--SGKLNNVAWAFGLGLERLAMVLFDIPD 310 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG-~G~ih-P~----------------------vl~~--~gi~~~v~~afEL~Le~L~m~~~~i~d 310 (428)
...+++++|. |+.| +-++| |+ .++. +|.+.. -.++||+|||.|++.|.+.
T Consensus 472 ~~fDL~i~G~--Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPh--gG~glGlDRLvmlltg~~s 547 (585)
T 1c0a_A 472 NAYDMVINGY--EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPH--AGLAFGLDRLTMLLTGTDN 547 (585)
T ss_dssp SEEEEEETTE--EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCE--EEEEEEHHHHHHHHHTCSC
T ss_pred eEEEEEECCE--EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCc--eeEEEcHHHHHHHHcCCCc
Confidence 5789999996 5554 24444 22 2222 355433 4689999999999999999
Q ss_pred chh
Q 014218 311 IRL 313 (428)
Q Consensus 311 irl 313 (428)
||-
T Consensus 548 IRd 550 (585)
T 1c0a_A 548 IRD 550 (585)
T ss_dssp GGG
T ss_pred HHh
Confidence 973
No 78
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=71.91 E-value=5.3 Score=31.57 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=35.8
Q ss_pred CeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q 014218 387 MTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVL 427 (428)
Q Consensus 387 kkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~L 427 (428)
.-.++||+ ++..+.+|-++|.+....++..|++.+|+++
T Consensus 44 g~aVTFrV--~~N~~n~taadVa~~a~~~k~~Le~~~G~~I 82 (91)
T 2qt7_A 44 GPALTFRI--RHNEQNLSLADVTQQAGLVKSELEAQTGLQI 82 (91)
T ss_dssp TTEEEEEE--CCCTTCCCHHHHHHHHHHTHHHHHHHHTSCE
T ss_pred cceEEEEe--ccCcccCCHHHHHHHHHHhHHHHHHhhCeEE
Confidence 44799999 8999999999999999999999999999875
No 79
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=71.63 E-value=4.9 Score=39.51 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.++||+|||.|++.|.++||-
T Consensus 315 gG~glGiDRLvmll~g~~~IRd 336 (345)
T 3a5y_A 315 SGVALGVDRLVMLALGAETLAE 336 (345)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGG
T ss_pred cEEEEcHHHHHHHHcCCCcHhe
Confidence 4689999999999999999973
No 80
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=49.95 E-value=11 Score=39.10 Aligned_cols=28 Identities=39% Similarity=0.593 Sum_probs=22.0
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+|++. .-.++||+|||.|++.|.++||-
T Consensus 491 yG~PP--~gG~GlGiDRLvMlltg~~~IRd 518 (529)
T 4ex5_A 491 YGMPP--TGGCGIGIDRLVMLLTDSPTIRD 518 (529)
T ss_dssp TCCCC--EEEEEEEHHHHHHHHHTCSSGGG
T ss_pred cCCCC--CcEEEEeHHHHHHHHcCCCcHHH
Confidence 35543 34689999999999999999973
No 81
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=49.44 E-value=13 Score=38.32 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=35.4
Q ss_pred ceEEEEECCeeEEEeee-eecc-HHHH--------------------HH--cCCCCceEEEEEechhHHHHhhcCCccch
Q 014218 257 YELEIFFKENWLEVLGC-GVTE-QEIL--------------------KR--SGKLNNVAWAFGLGLERLAMVLFDIPDIR 312 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG~-G~ih-P~vl--------------------~~--~gi~~~v~~afEL~Le~L~m~~~~i~dir 312 (428)
...+++++|. |++|. -++| |+.+ +. +|.+. .-.++||+|||.|++.|.++||
T Consensus 398 ~~fDL~~~G~--Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PP--hgG~glGiDRLvmll~g~~~IR 473 (487)
T 1eov_A 398 NSYDFFMRGE--EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPP--HAGGGIGLERVVMFYLDLKNIR 473 (487)
T ss_dssp SEEEEEETTE--EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCC--EEEEEEEHHHHHHHHTTCSSGG
T ss_pred EEEEEEeCCE--EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCC--CeEEEEhHHHHHHHHcCCCcHH
Confidence 5789999994 55552 4444 2222 21 24432 2467999999999999999997
Q ss_pred h
Q 014218 313 L 313 (428)
Q Consensus 313 l 313 (428)
-
T Consensus 474 d 474 (487)
T 1eov_A 474 R 474 (487)
T ss_dssp G
T ss_pred h
Confidence 3
No 82
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=47.45 E-value=78 Score=23.95 Aligned_cols=66 Identities=6% Similarity=-0.017 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 014218 356 TENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNV 425 (428)
Q Consensus 356 ~~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~ 425 (428)
..++|.+.+.+.+.+-|.+|.=+-+..-+ +..-+...+.+ +..+|-.+..++.++|.+.|.++|+.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g-~~~~v~~hi~v---~~~~~~~~~h~i~~~ie~~l~~~~~~ 76 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAG-PRSFLEFHLVV---RGDTPVEEAHRLCDELERALAQAFPG 76 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEET-TEEEEEEEEEE---CTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEEC-CcEEEEEEEEE---CCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 34666777766511225555444444322 23667788877 45678888899999999999888864
No 83
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=47.13 E-value=16 Score=38.14 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=36.6
Q ss_pred ceEEEEECCeeEEEeee-eecc-HHHHH----HcCCC--------------CceEEEEEechhHHHHhhcCCccchh
Q 014218 257 YELEIFFKENWLEVLGC-GVTE-QEILK----RSGKL--------------NNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG~-G~ih-P~vl~----~~gi~--------------~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
.+.++++.| .+++|. -++| |+.+. +.|++ .|-.-.|+||+|||.|++.|.++||.
T Consensus 461 ~rFDL~i~G--~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRd 535 (548)
T 3i7f_A 461 NSYDVFVRG--QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRK 535 (548)
T ss_dssp SEEEEEETT--EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGG
T ss_pred EEEEEEECC--EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHH
Confidence 468999998 456653 4444 44443 22322 11134789999999999999999973
No 84
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=46.67 E-value=27 Score=27.95 Aligned_cols=38 Identities=8% Similarity=0.306 Sum_probs=33.9
Q ss_pred eeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q 014218 388 TSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVL 427 (428)
Q Consensus 388 kSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~L 427 (428)
-.++||+ ++.++.||-++|.+....++..|++..|+++
T Consensus 52 ~aVTFrV--~~N~~n~taadVA~~a~~~K~~Le~~tG~~I 89 (99)
T 4hti_A 52 PAVTFKV--SANVQNVTTEDVEKATVDNKDKLEETSGLKI 89 (99)
T ss_dssp TEEEEEE--CCCTTCCCHHHHHHHHHHTHHHHHHHHSSCE
T ss_pred ceEEEEe--ccCCCCCCHHHHHHHHHHHHHHHHHhhCeEE
Confidence 3688887 6888999999999999999999999999875
No 85
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=42.54 E-value=16 Score=36.98 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=21.8
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+|.+.. -.++||+|||.|++.|.++||-
T Consensus 395 yG~pPh--gG~glGiDRLvmll~g~~~Ird 422 (435)
T 2xgt_A 395 YGTCPH--GGYGLGLERFICWLTNTNHIRD 422 (435)
T ss_dssp SSCCCE--EEEEEEHHHHHHHHHTCSCGGG
T ss_pred CCCCCC--ceEEEhHHHHHHHHcCCCcHHh
Confidence 355432 4679999999999999999973
No 86
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=41.28 E-value=45 Score=25.75 Aligned_cols=69 Identities=12% Similarity=0.234 Sum_probs=43.7
Q ss_pred EEecCCCCHHHHHHH-HHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCc
Q 014218 349 FWINESFTENNLCEV-VRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNV 425 (428)
Q Consensus 349 f~v~~~~~~~~i~~~-Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~ 425 (428)
..|+++-.+-.+.+. +...+.+-+.+|.+-- | .. .+-|+|-+.||.+|..|...+-.+-+..|+++||.
T Consensus 17 vfvddsdrftafeeellaryadkgirsvdvaa-y--ak-----gidivfvaadrkmtraefsaiasrsirelkerfgf 86 (115)
T 4hlb_A 17 VFVDDSDRFTAFEEELLARYADKGIRSVDVAA-Y--AK-----GIDIVFVAADRKMTRAEFSAIASRSIRELKERFGF 86 (115)
T ss_dssp ----CTTTTHHHHHHHHHHHGGGTEEEEEEEE-C--SS-----CEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEecccchhhHHHHHHHHHHhhcCcceeeHHH-H--hc-----CCcEEEEeccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 344444333344332 3334444466654432 2 12 25789999999999999999999999999999874
No 87
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=39.79 E-value=15 Score=37.92 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.++||+|||.|++.|.++||-
T Consensus 472 gG~glGiDRLvmlltg~~~IRd 493 (504)
T 1e1o_A 472 AGLGIGIDRMIMLFTNSHTIRD 493 (504)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGG
T ss_pred eeEEEcHHHHHHHHhCCCcHHh
Confidence 4689999999999999999973
No 88
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=39.26 E-value=24 Score=36.57 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=22.1
Q ss_pred cCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 284 ~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
+|.+. .-.++||+|||.|++.|.++||-
T Consensus 471 yG~PP--~gG~GlGiDRLvMlltg~~~IRd 498 (521)
T 3bju_A 471 YGLPP--TAGWGMGIDRVAMFLTDSNNIKE 498 (521)
T ss_dssp TTCCS--EEEEEEEHHHHHHHHTTCSSGGG
T ss_pred cCCCC--ceeEEEcHHHHHHHHhCCCcHHh
Confidence 35543 34689999999999999999973
No 89
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=38.57 E-value=21 Score=36.14 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=35.8
Q ss_pred ceEEEEECCeeEEEeee-eecc-HHHH------------------HH--cCCCCceEEEEEechhHHHHhhcCCccchh
Q 014218 257 YELEIFFKENWLEVLGC-GVTE-QEIL------------------KR--SGKLNNVAWAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 257 ~~a~I~~~g~~iGvlG~-G~ih-P~vl------------------~~--~gi~~~v~~afEL~Le~L~m~~~~i~dirl 313 (428)
.+.++++.| .+++|. -++| |+.+ +. +|.+. .-.|+||+|||.|++.|.++||-
T Consensus 351 ~rfdL~~~G--~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP--~~G~GlGidRLvm~l~g~~~Ird 425 (438)
T 3nem_A 351 RAFDLEYRG--VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPP--HGGFGLGAERLIKQMLDLPNIRE 425 (438)
T ss_dssp SEEEEEETT--EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCC--EEEEEEEHHHHHHHHTTCSCGGG
T ss_pred EEEEEEECC--EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCC--ceEEEEhHHHHHHHHhCCCcHHH
Confidence 478999998 456653 4443 3322 21 23443 35789999999999999999973
No 90
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=38.18 E-value=81 Score=24.79 Aligned_cols=51 Identities=8% Similarity=0.255 Sum_probs=34.8
Q ss_pred cCCCCHHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHH
Q 014218 352 NESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWN 414 (428)
Q Consensus 352 ~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~ 414 (428)
|.++++++|.++....|. |++|+++-- +.+.|-+|| +.|.+ .+++...++.
T Consensus 14 p~~~te~~L~~~F~~~G~--v~~v~i~~d---~~~~kg~af-V~f~~------~~~A~~Ai~~ 64 (115)
T 4f25_A 14 DKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGF-VHFET------QEAAERAIEK 64 (115)
T ss_dssp CTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEE-EEESC------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhccCC--EEEEEEeec---CCCCCceEE-EEECC------HHHHHHHHHH
Confidence 778999999999988764 788887532 222345666 77776 6666555543
No 91
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=33.20 E-value=1.7e+02 Score=22.82 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 014218 358 NNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLN 424 (428)
Q Consensus 358 ~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~ 424 (428)
.+|.+++.+.. -|.+|.=+-+...+ ++..+...|.. +.++|-.|+.++.++|.+.|.++|+
T Consensus 13 ~~I~~~l~~~~--gV~~vh~lr~r~~G-~~~~v~~hI~v---~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 13 DDIFAVLERFP--NVHNPHRVRIRRVG-TKYFIEMDIEV---DGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHTTCS--SCEEEEEEEEECSC-C-CEEEEEEEE---CTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCC--CccccEEEEEEEEC-CcEEEEEEEEE---CCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44455554433 25555444444322 35667888877 5677888999999999999998887
No 92
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=32.72 E-value=26 Score=35.60 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEechhHHHHhhcCCccchh
Q 014218 292 WAFGLGLERLAMVLFDIPDIRL 313 (428)
Q Consensus 292 ~afEL~Le~L~m~~~~i~dirl 313 (428)
-.|+||+|||.|++.|.++||-
T Consensus 422 gG~GlGidRLvm~ltg~~~Ird 443 (456)
T 3m4p_A 422 GGYGLGVERLVMWLLGEDHIRK 443 (456)
T ss_dssp EEEEEEHHHHHHHHHTCSCGGG
T ss_pred cEEEEcHHHHHHHHcCCccHHH
Confidence 4689999999999999999973
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.93 E-value=1.8e+02 Score=21.22 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHH
Q 014218 352 NESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQW 413 (428)
Q Consensus 352 ~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~ 413 (428)
|.+++.++|.+.....+. |++|.+. +..|| +.|.+ .+++....+
T Consensus 17 p~~~t~~~l~~~F~~~G~--i~~v~~~---------~g~af-V~f~~------~~~A~~A~~ 60 (90)
T 2dnq_A 17 PREATEQEIRSLFEQYGK--VLECDII---------KNYGF-VHIED------KTAAEDAIR 60 (90)
T ss_dssp CSSCCHHHHHHHHHTSSC--EEEEEEE---------TTEEE-EEESS------HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCC--EEEEEEE---------CCEEE-EEECC------HHHHHHHHH
Confidence 678999999999988764 7888876 23555 67765 566655554
No 94
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=23.60 E-value=40 Score=26.40 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=32.2
Q ss_pred CccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhh
Q 014218 331 GIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGV 367 (428)
Q Consensus 331 ~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~ 367 (428)
.+.|+|.+.-|.+.+-- |.||.+.+.++++..||+.
T Consensus 7 ~v~fk~~g~~P~l~k~K-flVp~~~tv~~~~~~lRkr 42 (91)
T 4gdk_A 7 DILLKAVGDTPIMKTKK-WAVERTRTIQGLIDFIKKF 42 (91)
T ss_dssp EEEEEECSSSCCCSCCE-EEEETTCBHHHHHHHHHHH
T ss_pred EEEEEecCCCCcccccE-EEcCCCCCHHHHHHHHHHH
Confidence 46799999999988875 8999999999999999985
No 95
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.59 E-value=2.3e+02 Score=21.15 Aligned_cols=50 Identities=10% Similarity=0.259 Sum_probs=33.7
Q ss_pred cCCCCHHHHHHHHHhhcCCceeEEEEEEEEcCCCCCeeEEEEEEEecCCCCCCHHHHHHHHH
Q 014218 352 NESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQW 413 (428)
Q Consensus 352 ~~~~~~~~i~~~Ir~~~g~lle~V~l~D~y~g~~gkkSl~~ri~yrs~drTLt~eEV~~~~~ 413 (428)
|.+++..+|.++....+. |++|.+.-. +.+.+..|| +.|.+ .+++..+.+
T Consensus 24 p~~~t~~~l~~~F~~~G~--i~~v~i~~~---~~~~~g~af-V~f~~------~~~a~~A~~ 73 (103)
T 2cqi_A 24 SRDVTEVLILQLFSQIGP--CKSCKMITE---HTSNDPYCF-VEFYE------HRDAAAALA 73 (103)
T ss_dssp CTTCCHHHHHHHHHHHSC--EEEEEEECC---CCSSCCEEE-EEESS------HHHHHHHHH
T ss_pred CccCCHHHHHHHHHhcCC--EeEEEEEec---CCCCCCEEE-EEECC------HHHHHHHHH
Confidence 778999999999998864 677766532 222345665 67765 666665554
No 96
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=23.21 E-value=62 Score=19.46 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 014218 403 LTDEDINELQWNVREQVQ 420 (428)
Q Consensus 403 Lt~eEV~~~~~~i~~~l~ 420 (428)
--|+||.++.+.|+++|.
T Consensus 10 pcdqeikelennirkals 27 (31)
T 2wh0_Q 10 PCDQEIKELENNIRKALS 27 (31)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 458999999999999884
No 97
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=22.47 E-value=71 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 014218 402 SLTDEDINELQWNVREQV 419 (428)
Q Consensus 402 TLt~eEV~~~~~~i~~~l 419 (428)
.||++|.+++|...+...
T Consensus 2 gLT~~EA~EfH~~~~~~~ 19 (41)
T 1nkz_B 2 TLTAEQSEELHKYVIDGT 19 (41)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 599999999999887765
No 98
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=22.11 E-value=1.5e+02 Score=28.02 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=39.0
Q ss_pred HHHhccc---ceeEEeeccCCCCCCC-----ceEEEEECCeeEEEee----eeeccHHHHHHcCCCCceEEEEEechhHH
Q 014218 234 ARHLFGA---VEMRWVDTYFPFTNPS-----YELEIFFKENWLEVLG----CGVTEQEILKRSGKLNNVAWAFGLGLERL 301 (428)
Q Consensus 234 l~~L~~~---~~~~~~~~~~p~~hPg-----~~a~I~~~g~~iGvlG----~G~ihP~vl~~~gi~~~v~~afEL~Le~L 301 (428)
++.||++ -++|+++.. |-.|. -.-||+++|-.|--+- +|-+. . .||..-.-.|||||
T Consensus 120 L~alGId~~~HDIRFVEDn--WEsPTLGAWGLGWEVWldGMEVTQFTYFQQvGGi~--------c-~pv~~EITYGLERl 188 (311)
T 3rf1_A 120 LENLGFDLKSHDIRFVEDN--WESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIA--------V-DLVSAEITYGLERI 188 (311)
T ss_dssp HHHTTCCGGGSCEEEEECC--EEETTTTEEEEEEEEEETTEEEEEEEEEEEETTEE--------C-SSCCEEEEEEHHHH
T ss_pred HHHhCCCccccCeeEeccC--CCCCcccccccceEEEEcCeeEeeeeeeeeeCCcc--------c-cccceeeehhHHHH
Confidence 4667764 247777653 44443 3568999997553332 12111 1 12323345689999
Q ss_pred HHhhcCCccc
Q 014218 302 AMVLFDIPDI 311 (428)
Q Consensus 302 ~m~~~~i~di 311 (428)
+|.+-+++.+
T Consensus 189 amylQ~vd~v 198 (311)
T 3rf1_A 189 AMYLQNVDNV 198 (311)
T ss_dssp HHHHTTCSSG
T ss_pred HHHHhCCCee
Confidence 9998877655
No 99
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=20.82 E-value=45 Score=26.17 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCCCccCCCCCCCCCcceeeeEEecCCCCHHHHHHHHHhhcCCceeEEEE
Q 014218 328 GQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRL 377 (428)
Q Consensus 328 ~~~~~~fkp~SkyP~~~RDiSf~v~~~~~~~~i~~~Ir~~~g~lle~V~l 377 (428)
.++.+.|+|...-|.+.+-- |.||.+.+.++++..||+.-. ++.+-|
T Consensus 7 ~Kv~vrfk~~g~~P~l~k~K-flV~~~~t~~~~v~~lRkrL~--l~alFl 53 (91)
T 3w1s_C 7 QKIQIKFQPIGSIGQLKPSV-CKISMSQSFAMVILFLKRRLK--MDHVYC 53 (91)
T ss_dssp CEEEEEEEECCC-------E-EEEETTSBHHHHHHHHHHHHT--CSCCEE
T ss_pred CeEEEEEEecCCCCcccccE-EEcCCCCCHHHHHHHHHHhhC--CceEEE
Confidence 34457899999999998875 889999999999999998643 244444
No 100
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=20.80 E-value=65 Score=25.90 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 014218 400 ERSLTDEDINELQWNVREQ 418 (428)
Q Consensus 400 drTLt~eEV~~~~~~i~~~ 418 (428)
.|.||++||.++...+.+.
T Consensus 36 ~r~Ltdeev~~Va~~L~~~ 54 (103)
T 2kvc_A 36 CRRLSHDEVKAVANELMRL 54 (103)
T ss_dssp TTTSCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHc
Confidence 4789999999999887643
Done!