RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014218
(428 letters)
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 506 bits (1305), Expect = e-180
Identities = 181/413 (43%), Positives = 247/413 (59%), Gaps = 40/413 (9%)
Query: 50 RPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYF 109
+ S +EL G +DD +N+ + T++G LH + HP+ ++K + E+F
Sbjct: 8 QRAPGSVVELLGKSYPQDD------HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHF 61
Query: 110 DSNYPNK-----FNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTS 164
Y + F+ +D+L P+V+ QNFD +L+PADH SR D YY++ +LR HTS
Sbjct: 62 YKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTS 121
Query: 165 AHQAELLKEH-NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLD------ 217
AHQ +LL + FLV GDVYRRD IDS HYP+FHQ+E V +F E A D
Sbjct: 122 AHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQL 181
Query: 218 -----------------ATEYAAKDLKRCLEGLARHLFGA-VEMRWVDTYFPFTNPSYEL 259
A + DLK+ L L HLFG +E+RWVD YFPFT+PS+E+
Sbjct: 182 FEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEM 241
Query: 260 EIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDE 319
EI F WLEVLGCGV EQ+++ +G + + WAFGLGLERLAM+L+DIPDIRLFW DE
Sbjct: 242 EINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDE 301
Query: 320 RFTSQFSQGQLG--IKFKPFSKYPPCYKDMSFWI-NESFTENNLCEVVRGVAGDLVEEVR 376
RF QF + +KF+P SKYP D+SFW+ +E++ EN+ ++VR + GDLVE+V
Sbjct: 302 RFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVD 361
Query: 377 LIDNFTNKK-GMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
LID F + K TSHCYRI YR MER+L+ ++ + ++E L V R
Sbjct: 362 LIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 414
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 177 bits (451), Expect = 3e-52
Identities = 73/201 (36%), Positives = 111/201 (55%), Gaps = 20/201 (9%)
Query: 132 NFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHN---HFLVTGDVYRRDS 188
NFD + +P H +R+ +DT++ D+ +LR TS Q +K + G VYR D
Sbjct: 139 NFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDY 198
Query: 189 IDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMRWVD 247
D TH P+FHQMEG+ + D + + +LK L R+ F +++R+
Sbjct: 199 -DQTHTPMFHQMEGLIV---DT------NIS---FTNLKGTLHDFLRNFFEEDLQIRFRP 245
Query: 248 TYFPFTNPSYELEIFFKEN-WLEVLGCGVTEQEILKRSGKLNNV--AWAFGLGLERLAMV 304
+YFPFT PS E+++ K WLEVLGCG+ +L+ G V +AFG+G+ERL M+
Sbjct: 246 SYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTML 305
Query: 305 LFDIPDIRLFWSSDERFTSQF 325
+ + D+R F+ +D RF QF
Sbjct: 306 RYGVTDLRSFFENDLRFLKQF 326
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 172 bits (437), Expect = 1e-50
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 32/214 (14%)
Query: 132 NFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNH-----FLVTGDVYRR 186
NF+ + +P H +R D++Y+ + ++R HTS QA +++ N + G VYRR
Sbjct: 85 NFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRR 144
Query: 187 DSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMRW 245
DS D+TH F Q+EG+ + D+ + DLK LE +A+ LFGA E+R
Sbjct: 145 DSDDATHSHQFTQIEGLVV---DK------NIK---MSDLKGTLELVAKKLFGADREIRL 192
Query: 246 VDTYFPFTNPSYELEIFF------------KENWLEVLGCGVTEQEILKRSGKLNNV--A 291
+YFPFT PS E+++ W+E+LG G+ +L+ +G +N
Sbjct: 193 RPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSG 252
Query: 292 WAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQF 325
+AFG+G +R+AM+ + I DIR F+++D RF QF
Sbjct: 253 FAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQF 286
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 169 bits (431), Expect = 4e-49
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 44/226 (19%)
Query: 132 NFDDVLVPADHVSRSYNDTYYV---------------DSQTVLRCHTSAHQAELLKEHN- 175
NFD + +P H +R DT+++ + + +LR HTS Q + H
Sbjct: 133 NFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTP 192
Query: 176 --HFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGL 233
+V G V+R + D+TH VFHQ+EG+ + E LK + L
Sbjct: 193 PFRIVVPGRVFRFEQTDATHEAVFHQLEGLVV---GE------GIA---MAHLKGAIYEL 240
Query: 234 ARHLFGA-VEMRWVDTYFPFTNPSYELEIFFKEN--WLEVLGCGVTEQEILKRSGKLNNV 290
A+ LFG ++R+ YFPF P + +++ E WLE+ G G+ ++ +
Sbjct: 241 AQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRER 300
Query: 291 A-----------WAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQF 325
+AFGLG+ERLAM+ + IPDIR F+ +F QF
Sbjct: 301 LGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 346
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 166 bits (421), Expect = 2e-45
Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 38/218 (17%)
Query: 138 VPADHVSRSYNDTY-------YVDSQTVLRCHTSAHQA----ELLKEHNH---FLVTGDV 183
+ ++ + D + V S+ LR H ++ +L+ +
Sbjct: 174 ISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRC 233
Query: 184 YRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-V 241
+RR+ D +H +H E D K EGL
Sbjct: 234 FRREQKEDKSHLMTYHSASCAIA---GE------GVD---INDGKAIAEGLLSQFGFTNF 281
Query: 242 EMRWVDTYFPFTNPSYELEIFFK----ENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLG 297
+ + + P + E++ + WLEV GV L + G ++ GLG
Sbjct: 282 KFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYG-IDVPVMNLGLG 340
Query: 298 LERLAMVLFDIPDIR-----LFWSSDERFTSQFSQGQL 330
+ERLAM+ + D+R F+ + S +L
Sbjct: 341 VERLAMISGNFADVREMVYPQFYEHKLNDRNVASMVKL 378
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 163 bits (414), Expect = 2e-44
Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 38/218 (17%)
Query: 138 VPADHVSRSYNDTY-------YVDSQTVLRCHTSAH---QAELLKEHN----HFLVTGDV 183
+ ++ + D + V S+ LR H ++ L
Sbjct: 174 ISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRC 233
Query: 184 YRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-V 241
+RR+ D +H +H E D K EGL
Sbjct: 234 FRREQKEDKSHLMTYHSASCAIA---GE------GVD---INDGKAIAEGLLSQFGFTNF 281
Query: 242 EMRWVDTYFPFTNPSYELEIFFK----ENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLG 297
+ + + P + E++ + WLEV GV L + G ++ GLG
Sbjct: 282 KFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYG-IDVPVMNLGLG 340
Query: 298 LERLAMVLFDIPDIR-----LFWSSDERFTSQFSQGQL 330
+ERLAM+ + D+R F+ + S +L
Sbjct: 341 VERLAMISGNFADVREMVYPQFYEHKLNDRNVASMVKL 378
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 161 bits (409), Expect = 7e-44
Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 38/218 (17%)
Query: 138 VPADHVSRSYNDTY-------YVDSQTVLRCHTSAHQA----ELLKEHNH---FLVTGDV 183
+ ++ + D + V S+ LR H ++ +L+ +
Sbjct: 174 ISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRC 233
Query: 184 YRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-V 241
+RR+ D +H +H E D K EGL
Sbjct: 234 FRREQKEDKSHLMTYHSASCAIA---GE------GVD---INDGKAIAEGLLSQFGFTNF 281
Query: 242 EMRWVDTYFPFTNPSYELEIFFK----ENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLG 297
+ + + P + E++ + WLEV GV L + G ++ GLG
Sbjct: 282 KFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYG-IDVPVMNLGLG 340
Query: 298 LERLAMVLFDIPDIR-----LFWSSDERFTSQFSQGQL 330
+ERLAM+ + D+R F+ + S +L
Sbjct: 341 VERLAMISGNFADVREMVYPQFYEHKLNDRNVASMVKL 378
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 159 bits (403), Expect = 8e-44
Identities = 65/296 (21%), Positives = 104/296 (35%), Gaps = 66/296 (22%)
Query: 83 FTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADH 142
F G+ + HP+ +++ + F F + I S NFD + P H
Sbjct: 212 FLAHGVLPDSGHLHPLLKVRSQFRQIFLEM---GFTEMPTDNFIESSFWNFDALFQPQQH 268
Query: 143 VSRSYNDTYYVD---------------------------------------SQTVLRCHT 163
+R +DT+++ + +LR HT
Sbjct: 269 PARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHT 328
Query: 164 SAHQAELLKEHNH--------FLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAG 215
++ A L + V+R +++D+TH FHQ+EGV A
Sbjct: 329 TSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGV---------VAD 379
Query: 216 LDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKEN--WLEVLGC 273
T L L G ++R+ Y P+T PS E+ + + W+EV
Sbjct: 380 HGLT---LGHLMGVLREFFTK-LGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNS 435
Query: 274 GVTEQEILKRSGKLNNV-AWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQG 328
GV E+L G NV A+GL LER M+ + I +IR +
Sbjct: 436 GVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSP 491
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 157 bits (398), Expect = 5e-43
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 50/238 (21%)
Query: 132 NFDDVLVPADHVSRSYNDTYY-------VDSQTVLRCHTSAHQAELLKEHNH-------F 177
+ + V + ++ + + S LR H + L
Sbjct: 149 IAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKL 208
Query: 178 LVTGDVYRRDS-IDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARH 236
+RR+ D+T + V + DE + + D K E L R
Sbjct: 209 FSIDRCFRREQGEDATRLYTYFSASCVLV---DE------ELS---VDDGKAVAEALLRQ 256
Query: 237 LFGA-VEMRWVDTYFPFTNPSYELEIF------------FKENWLEVLGCGVTEQEILKR 283
R + + P + E+F + + W+E+ G+ L
Sbjct: 257 FGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAE 316
Query: 284 SGKLNNVAWAFGLGLERLAMVLFDIPDIRLF---------WSSDERFTSQFSQGQLGI 332
+ GLG+ERLAM+L+ D+R SD + ++
Sbjct: 317 YD-IPYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIAREIKVKEVPQ 373
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 158 bits (402), Expect = 6e-43
Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 38/218 (17%)
Query: 138 VPADHVSRSYNDTY-------YVDSQTVLRCHTSAHQA----ELLKEHNH---FLVTGDV 183
+ ++ + D + V S+ LR H ++ +L+ +
Sbjct: 174 ISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRC 233
Query: 184 YRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-V 241
+RR+ D +H +H E D K EGL
Sbjct: 234 FRREQKEDKSHLMTYHSASCAIA---GE------GVD---INDGKAIAEGLLSQFGFTNF 281
Query: 242 EMRWVDTYFPFTNPSYELEIFFK----ENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLG 297
+ + + P + E++ + WLEV GV L + G ++ GLG
Sbjct: 282 KFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYG-IDVPVMNLGLG 340
Query: 298 LERLAMVLFDIPDIR-----LFWSSDERFTSQFSQGQL 330
+ERLAM+ + D+R F+ + S +L
Sbjct: 341 VERLAMISGNFADVREMVYPQFYEHKLNDRNVASMVKL 378
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 146 bits (369), Expect = 6e-39
Identities = 40/235 (17%), Positives = 72/235 (30%), Gaps = 45/235 (19%)
Query: 132 NFDDVLVPADHVSRSYNDTYYV-------DSQTVLRCHTSAHQA----ELLKEHN---HF 177
+ V + + + + LR H ++ L+K+
Sbjct: 161 IAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLPLKL 220
Query: 178 LVTGDVYRRDSI-DSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARH 236
+RR+ D +H +H V + E D + D K EGL
Sbjct: 221 FSIDRCFRREQREDRSHLMSYHSASCVVV---GE------DVS---VDDGKVVAEGLLAQ 268
Query: 237 LFGA-VEMRWVDTYFPFTNPSYELEIFFK----ENWLEVLGCGVTEQEILKRSGKLNNVA 291
+ + + + P + E++ W+EV GV L + ++
Sbjct: 269 FGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYN-IDVPV 327
Query: 292 WAFGLGLERLAMVLFDIPDIRL-----FWSSDERFTSQFSQGQLGIKFKPFSKYP 341
GLG+ERLAM+++ D+R F+ K P
Sbjct: 328 MNLGLGVERLAMIIYGYEDVRAMVYPQFYEYRLSDRDIA-------GMIRVDKVP 375
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 101 bits (253), Expect = 2e-24
Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 32/188 (17%)
Query: 141 DHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFL-------VTGDVYRRDSIDSTH 193
D+ + + VD LR + + L++ + L G YR++S H
Sbjct: 115 DNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 174
Query: 194 YPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVD---TYF 250
F + + G T ++L E + + + + +
Sbjct: 175 LEEFTMLVFWQM---------GSGCT---RENL----ESIITDFLNHLGIDFKIVGDSCM 218
Query: 251 PFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPD 310
F + + LE+ V + + G G GLERL V D +
Sbjct: 219 VFGDTLDVMHG-----DLELSSALVGPIPLDREWGIDKPWI-GAGFGLERLLKVKHDFKN 272
Query: 311 IRLFWSSD 318
I+ S+
Sbjct: 273 IKRAARSE 280
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 79.8 bits (198), Expect = 3e-16
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKK---GMT 388
+ + S++P +D++ + E+ ++ + V + V V L D + K G
Sbjct: 695 PQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYK 754
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
S + + R+L +E+I E ++ + LR
Sbjct: 755 SLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLR 794
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 76.4 bits (189), Expect = 5e-15
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKK---GMT 388
+ F+ S++P ++D++ + + +VR AG +E + L D + G
Sbjct: 682 LAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHK 741
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
S + + +R +R+L DE++ E V E ++ LR
Sbjct: 742 SLAFHLRFRHPKRTLRDEEVEEAVSRVAEALR-ARGFGLR 780
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 72.5 bits (179), Expect = 7e-14
Identities = 19/94 (20%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKK---GMT 388
I ++ K+P +D++ +N + L +++ D+++ + D + + G
Sbjct: 698 INYEQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKK 757
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSK 422
S R+ Y E +LTDE ++++ + E +Q++
Sbjct: 758 SVAIRLNYLDTEDTLTDERVSKIHDKILEALQAE 791
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 73/464 (15%), Positives = 129/464 (27%), Gaps = 151/464 (32%)
Query: 16 SLFIHTNSLKRFAFRVPFSSTSTSTSPLPLKK---KWRPPAASALELGGVKMAKDDIVRD 72
L + SL VP +S ++ L++ K P A DD
Sbjct: 8 PLTLSHGSL-EHVLLVPTASFFIASQ---LQEQFNKILPEPTEGF-------AADD---- 52
Query: 73 DPTNNVPDTIFTK-LGMQLHKRNQHPIG----ILKNAIYEYFDSNYPNKFNKFDDL-CPI 126
+PT + K LG +G +L + F++ + + +D+
Sbjct: 53 EPTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCL-TEFENC----YLEGNDIHALA 105
Query: 127 VSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRR 186
+ Q D LV + ++Y + + + SA L + G+
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVG----EGNA--- 154
Query: 187 DSIDSTHYPVFH-QMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRW 245
+ +F Q G + Y +E L R L+
Sbjct: 155 -QL----VAIFGGQ--GNTDDYFEE-----L------------------RDLY------- 177
Query: 246 VDTYFPFTNPSYELEIFFKE--NWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLER--- 300
TY + K L L + E + G LN + W LE
Sbjct: 178 -QTYHVL------VGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEW-----LENPSN 224
Query: 301 ------LAMVLFDIPDIRLFWSSDERFTSQFSQ-----GQLGIKFKPFSKYPP----CYK 345
L + P I + Q + LG Y +
Sbjct: 225 TPDKDYLLSIPISCPLIGVI---------QLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 346 DM---------SFWINESFTENNLCEVVR-----GVAG-------DLVEEVRLIDNFTNK 384
+ W ESF + + + GV L + L D+ N
Sbjct: 276 GLVTAVAIAETDSW--ESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLENN 331
Query: 385 KGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
+G+ S I ++ + + +N+ N ++ + L
Sbjct: 332 EGVPSPMLSI--SNLTQEQVQDYVNKT--NSHLPAGKQVEISLV 371
Score = 46.2 bits (109), Expect = 2e-05
Identities = 63/373 (16%), Positives = 100/373 (26%), Gaps = 172/373 (46%)
Query: 68 DIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPN-KFNKFDDLCPI 126
DIV ++P N TI H G I E NY F D
Sbjct: 1663 DIVINNPVNL---TI-------------HFGGEKGKRIRE----NYSAMIFETIVDGK-- 1700
Query: 127 VSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRR 186
+ ++ F ++ + S SY T+ + LL
Sbjct: 1701 LKTEKIFKEI----NEHSTSY--TFR-------------SEKGLL--------------- 1726
Query: 187 DSIDSTHY--P--------VFHQMEGVSIFYPDEWGAAGLDAT-------EYAAKDLKRC 229
+T + P F ++ G DAT EYAA
Sbjct: 1727 ---SATQFTQPALTLMEKAAFEDLK--------SKGLIPADATFAGHSLGEYAA------ 1769
Query: 230 LEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNN 289
L LA E+ +EV+ R G
Sbjct: 1770 LASLA----DV---------MSI------------ESLVEVV---------FYR-GMTMQ 1794
Query: 290 VAWAFG-LGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMS 348
VA LG M+ + P G++ F + +
Sbjct: 1795 VAVPRDELGRSNYGMIAIN-P------------------GRVAASF--------SQEALQ 1827
Query: 349 FWINESFTENN-LCEVV----RG----VAGDL--VEEVRLIDNFTNKKGMTSHCYRIAYR 397
+ + L E+V AGDL ++ V + NF + +I
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ-------KIDII 1880
Query: 398 SMERSLTDEDINE 410
+++SL+ E++
Sbjct: 1881 ELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 4e-06
Identities = 67/477 (14%), Positives = 128/477 (26%), Gaps = 139/477 (29%)
Query: 19 IHTNSLKRFAFRVPFSST--STSTSPLPLKKK--WRPPAASAL-----EL---------- 59
I T + + K R L EL
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 60 -GGV-K--MAKDDIVRDDPT-NNVPDTIF-TKLGMQLHKRNQHPIGILK--NAIYEYFDS 111
G K +A D + + IF L P +L+ + D
Sbjct: 158 VLGSGKTWVALD-VCLSYKVQCKMDFKIFWLNLK-----NCNSPETVLEMLQKLLYQIDP 211
Query: 112 NYPNKFNKFDDL-CPIVSVKQNFDDVLVPADHVSRSYNDTYYV-----DSQTV----LRC 161
N+ ++ + ++ I S++ +L S+ Y + V +++ L C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 162 HTSAHQAELLKEHNHFLV-TGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGL--DA 218
L+ T D + + PDE L
Sbjct: 267 KI--------------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKY 310
Query: 219 TEYAAKDLKRCLEGLARH-----LFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGC 273
+ +DL R E L + + + T+ +NW V
Sbjct: 311 LDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATW---------------DNWKHVNCD 353
Query: 274 GVTEQEILKRSGKLNNVAWAFGLGLE----R---LAMVLF----DIPDIRL--FWSS--- 317
+T I++ S LN LE R + +F IP I L W
Sbjct: 354 KLT--TIIESS--LNV--------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 318 --DERFTSQFSQGQLGIK-FKPFSKY-PPCYKDMSFWINESFTENNLCEVVRGVAGDLVE 373
++ + L K K + P Y ++ + + + +V+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----------IVD 451
Query: 374 EVRLIDNFTNKKGMTSH-----CYRIAY--RSMERSLTDEDINELQWNVREQVQSKL 423
+ F + + + I + +++E + + R ++ K+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKI 507
Score = 45.2 bits (106), Expect = 3e-05
Identities = 49/337 (14%), Positives = 99/337 (29%), Gaps = 87/337 (25%)
Query: 89 QLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYN 148
+ + + + + ++A + FD D I+S K+ D +++ D VS +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILS-KEEIDHIIMSKDAVSGTL- 65
Query: 149 DTYYVDSQTVLRCHTSAHQA---ELLKEHNHFLVTG--DVYRRDSIDSTHYPVFHQ--ME 201
T+L Q E+L+ + FL++ R+ S+ + Y
Sbjct: 66 --RLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 202 GVSIFYPDEWGAAGLDAT-EYAAKDLKRCLEGLARH----LFG------------AVEMR 244
+F + + L++ L L + G
Sbjct: 122 DNQVFAK-------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 245 WVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMV 304
V F +IF WL + + + +L+ L++L
Sbjct: 175 KVQCKMDF-------KIF----WLNL-KNCNSPETVLEM--------------LQKLLYQ 208
Query: 305 LFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDM----SFWINESFTENNL 360
+ R SS+ + Q +L K Y C + + +F N
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAF--NLS 265
Query: 361 C---------EVVRGVAGDLVEEVRLIDNFTNKKGMT 388
C +V ++ + L + +T
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDH---HSMTLT 299
Score = 44.8 bits (105), Expect = 5e-05
Identities = 42/306 (13%), Positives = 79/306 (25%), Gaps = 82/306 (26%)
Query: 18 FIHTNSLKRFAFRVPFSSTSTSTSPLPLKKKWRPPAASALELGGVKMAKDDIVRDDPTNN 77
LP + P ++ + + +D + D +
Sbjct: 298 LTPDEVKSLLL-----KYLDCRPQDLPREVLTTNPRRLSI-IA--ESIRDGLATWDNWKH 349
Query: 78 VPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNK-FDDLCPIVSVKQNF-DD 135
V K L I + P ++ K FD L SV F
Sbjct: 350 V----------NCDK--------LTTIIESSLNVLEPAEYRKMFDRL----SV---FPPS 384
Query: 136 VLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTG--DVYRRDSIDSTH 193
+P +S + D D V+ H+ L+++ +Y + +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 194 YPVFHQM--EGVSI---FYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDT 248
H+ + +I F D+ LD +Y + HL E T
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFY-------SHIGHHLKNI-EHPERMT 491
Query: 249 YFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDI 308
F +F +LE K+ + +L +
Sbjct: 492 LFR--------MVFLDFRFLE---------------QKIRHD----STAWNASGSILNTL 524
Query: 309 PDIRLF 314
++ +
Sbjct: 525 QQLKFY 530
Score = 35.2 bits (80), Expect = 0.050
Identities = 24/203 (11%), Positives = 51/203 (25%), Gaps = 60/203 (29%)
Query: 255 PSYELEIFFKENWLEVLGCGVTEQ------EILKRSGKLNNVAWAFGLGLERLAMVLFDI 308
I KE ++ L + V L
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLR--------- 88
Query: 309 PDIRLFWSS-----------DERFTSQ----FSQGQLGIKFKPFSKY----PPCYKDMSF 349
+ + S + Q ++ Q F+KY Y +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQ 142
Query: 350 WINESFTENNLCEVVRGVAGD----LVEEV----RLIDNFTNKKGMTSHCYRIAYRSMER 401
+ E N+ ++ GV G + +V ++ K I + +++
Sbjct: 143 ALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFK---------IFWLNLKN 191
Query: 402 SLTDEDINELQWNVREQVQSKLN 424
+ E + E+ + Q+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWT 214
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 33.6 bits (77), Expect = 0.12
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
G+GLER+ M+ IP+IR
Sbjct: 516 CGIGLERITMLYLGIPNIR 534
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 33.4 bits (77), Expect = 0.14
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
G+GLER+ M D+ +IR
Sbjct: 455 GGIGLERVVMFYLDLKNIR 473
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 32.9 bits (76), Expect = 0.20
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
FGLG ERL + D+P+IR
Sbjct: 406 FGLGAERLIKQMLDLPNIR 424
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 32.5 bits (75), Expect = 0.27
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
F +G ERL L +P++R
Sbjct: 390 FAIGAERLTQKLLGLPNVR 408
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 32.1 bits (74), Expect = 0.30
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
FG+GL RL ++L I ++
Sbjct: 397 FGMGLARLMVMLTGIQSVK 415
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 32.4 bits (73), Expect = 0.34
Identities = 35/228 (15%), Positives = 57/228 (25%), Gaps = 30/228 (13%)
Query: 108 YFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLR---C--H 162
+ YP + + D V + + C
Sbjct: 270 HAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPF 329
Query: 163 TSAHQAELLKEHN----HFLVTGDVYRRDSIDSTHYPV----FHQMEGVSIFYPDEWGAA 214
E L F +G +R +S H FH++E V I +E
Sbjct: 330 WMYVAGETLPNEEIPVKVFDRSGTSHRYES-GGIHGIERVDEFHRIEIVWIGTKEEVLKC 388
Query: 215 GLDATEYAAKDLKRCLEG-----LARHLFGAVEMRWVDTYFPFTNPSYELEIFF-----K 264
+ + L+ F A E + + E
Sbjct: 389 AEELHDRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENT-VGTTDYEACLPYRGPD 447
Query: 265 ENWLEVLGCGVTEQEILKRSG---KLNNVAWA--FGLGLERLAMVLFD 307
WLE + + K + + W+ G+GLER A V
Sbjct: 448 GEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVFLA 495
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 30.7 bits (70), Expect = 0.73
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 267 WLEVLGCGVTEQEILKRSGK-LNNVAWAFGLG 297
L G G + + ++ FGLG
Sbjct: 20 LLIFFGVGCVAALKVAGASFGQWEISVIFGLG 51
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 30.6 bits (70), Expect = 1.1
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 189 IDSTH-YP--VFHQMEGV---SIFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
+ YP VF Q+ S+ P+EWG G Y LE +A
Sbjct: 42 HEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQ-----VLEEIAA 89
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 30.2 bits (69), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
FGLG+ERL + + IR
Sbjct: 402 FGLGVERLVAWVLKLDHIR 420
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 30.1 bits (69), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
+ P+EWG GLD+ +A LE LA
Sbjct: 51 MTTPEEWGGVGLDSVTWAL-----ALEELAA 76
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 29.9 bits (68), Expect = 1.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
G+G+ERL + I
Sbjct: 261 AGIGVERLVRFIVGAKHIA 279
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.5
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 15/38 (39%)
Query: 22 NSLKRFAFRVPFSSTSTSTSPLPLKKKWRPPAASALEL 59
+LK+ + L K + +A AL +
Sbjct: 20 QALKKL------------QASL---KLYADDSAPALAI 42
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain,
protein-inhibitor complex,
oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A
{Sus scrofa}
Length = 573
Score = 30.2 bits (67), Expect = 1.6
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 308 IPDIRLFWSSDERFTSQFSQG------QLGIKFKPFSKYPPCYKDMSFWINESFTENNLC 361
+R W D F QF G + ++ K+PP +++ + + L
Sbjct: 126 AERVRDSWKEDALFGYQFLNGTNPMLLRHSVELPARLKFPPGMEELQAQLEKELQGGTLF 185
Query: 362 E 362
E
Sbjct: 186 E 186
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLARH 236
P+E+G GLD A E +R
Sbjct: 82 ADVPEEYGGIGLDKVSSA-----LIAEKFSRA 108
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 29.8 bits (68), Expect = 1.8
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
P+ +G AGL +A +E +A
Sbjct: 55 ALVPEAYGGAGLSTRLFAR-----MVEAIAY 80
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 29.9 bits (68), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
+GLG+ERL M L IR
Sbjct: 424 YGLGVERLVMWLLGEDHIR 442
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
+GLGLER L + IR
Sbjct: 403 YGLGLERFICWLTNTNHIR 421
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 29.8 bits (68), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
+ P+E G AGLD YA +E ++R
Sbjct: 54 MDVPEELGGAGLDYLAYAI-----AMEEISR 79
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural
genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens}
SCOP: b.1.18.1
Length = 95
Score = 28.0 bits (62), Expect = 2.1
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 133 FDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQA 168
FD + VPA + VLRC+ AH
Sbjct: 42 FDQISVPASLIQ-----------PGVLRCYCPAHDT 66
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 29.4 bits (67), Expect = 2.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
I P+E+G G D+ +E +AR
Sbjct: 67 IHVPEEYGGQGADSVATCI-----VIEEVAR 92
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 29.4 bits (67), Expect = 2.2
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
++ + G +GL + + E LA
Sbjct: 67 VYIQTDVGGSGLSRLDTS-----VIFEALAT 92
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 29.5 bits (67), Expect = 2.4
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 7/44 (15%)
Query: 168 AELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQME-------GVS 204
E+ + H FL+ +VY VS
Sbjct: 200 VEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVS 243
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 29.4 bits (67), Expect = 2.5
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
P+E+G GL + E LA
Sbjct: 53 AIIPEEYGGMGLKMLDEVI-----VGEELAY 78
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 29.0 bits (66), Expect = 2.8
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
I E+G G +E LA+
Sbjct: 77 IEVDPEYGGTGASFLSTVL-----VIEELAK 102
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 29.0 bits (66), Expect = 2.8
Identities = 5/31 (16%), Positives = 7/31 (22%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
E G GL + E +
Sbjct: 41 AEVAAEHGGLGLGSRENGE-----FTAHVGS 66
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 29.3 bits (66), Expect = 2.9
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLARH 236
+ P E G GL T+YA R +E + H
Sbjct: 96 LQVPSELGGVGLCNTQYA-----RLVEIVGMH 122
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 28.8 bits (65), Expect = 3.8
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
I P+E+G L E L+
Sbjct: 77 IDVPEEYGGLDLPKVIST-----VVAEELSG 102
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding
protein, 12-LOX, platelet-type lipoxygenase 12,
structural genomics; 2.60A {Homo sapiens}
Length = 541
Score = 29.0 bits (64), Expect = 3.8
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 306 FDIPDIRLFWSSDERFTSQFSQG------QLGIKFKPFSKYPPCYKDMSFWINESFTENN 359
+R W DE F+ QF G + P +++ + + +
Sbjct: 59 ALAEKVRQCWQDDELFSYQFLNGANPMLLRRSTSLPSRLVLPSGMEELRAQLEKELQNGS 118
Query: 360 LCEV 363
L E
Sbjct: 119 LFEA 122
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 28.6 bits (65), Expect = 4.3
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
P+ G GL + E LA
Sbjct: 64 THIPENCGGLGLGTFDACL-----ISEELAY 89
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 28.4 bits (64), Expect = 4.4
Identities = 5/31 (16%), Positives = 6/31 (19%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
G G E A +E
Sbjct: 62 GQISPAHGGTGGTLIESAI-----LVEECYS 87
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP
complex, calcium stimulation, RECA, DMC1; HET: DNA ANP;
1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11
PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A*
3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A*
3etl_A* 4dc9_A* 2gdj_A*
Length = 322
Score = 28.4 bits (63), Expect = 5.1
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 158 VLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEG 202
V R + S Q ++ + G+ + IDS ++ G
Sbjct: 179 VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG 223
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 28.3 bits (64), Expect = 5.1
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
I P ++G +GL E+ +E ++R
Sbjct: 63 ITAPVQYGGSGLGYLEHVL-----VMEEISR 88
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 28.4 bits (64), Expect = 5.2
Identities = 5/31 (16%), Positives = 6/31 (19%), Gaps = 5/31 (16%)
Query: 205 IFYPDEWGAAGLDATEYAAKDLKRCLEGLAR 235
P G + LE L
Sbjct: 60 AQVPIPLGGTMESLVHESI-----ILEELFA 85
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD;
1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A*
2xn0_A*
Length = 732
Score = 28.5 bits (63), Expect = 5.3
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 165 AHQAELLKEHNHFLVTGDVYRRDSIDSTHY 194
Q K+ G +YR + S
Sbjct: 623 VKQVTEYKKIREVTQFGTLYRLKASASNQC 652
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding
protein-siderophore complex, FHUD complex with
gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP:
c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Length = 266
Score = 27.4 bits (61), Expect = 8.7
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 169 ELLKEHN--HFLVTGDVYRRDSIDSTHYPVFHQMEGVS----IFYPDEWGAAGLDATEYA 222
+ L + L +D P++ M V P W + +
Sbjct: 195 DRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHF 254
Query: 223 AKDLKRCLEGLA 234
+ L + G A
Sbjct: 255 VRVLDNAIGGKA 266
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.420
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,758,414
Number of extensions: 411326
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 61
Length of query: 428
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 332
Effective length of database: 4,021,377
Effective search space: 1335097164
Effective search space used: 1335097164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)