RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014218
(428 letters)
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 175 bits (445), Expect = 7e-53
Identities = 74/274 (27%), Positives = 120/274 (43%), Gaps = 48/274 (17%)
Query: 84 TKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHV 143
+ G L HPI +++ + E F + + + + S NFD + +P H
Sbjct: 5 SLPGASLFSGGLHPITLMERELVEIFRALG---YQAVEG-PEVESEFFNFDALNIPEHHP 60
Query: 144 SRSYNDTYYV---------------DSQTVLRCHTSAHQAELL---KEHNHFLVTGDVYR 185
+R DT+++ + + +LR HTS Q + +V G V+R
Sbjct: 61 ARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFR 120
Query: 186 RDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMR 244
+ D+TH VFHQ+EG+ + E A LK + LA+ LFG ++R
Sbjct: 121 FEQTDATHEAVFHQLEGLVV---GEG---------IAMAHLKGAIYELAQALFGPDSKVR 168
Query: 245 WVDTYFPFTNPSYELEIFF--KENWLEVLGCGVTEQEILKRSGKLNNVA----------- 291
+ YFPF P + +++ WLE+ G G+ ++ +
Sbjct: 169 FQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTG 228
Query: 292 WAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQF 325
+AFGLG+ERLAM+ + IPDIR F+ +F QF
Sbjct: 229 FAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 262
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus
thermophilus [TaxId: 274]}
Length = 104
Score = 94.9 bits (236), Expect = 2e-24
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 332 IKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKK---GMT 388
+ F+ S++P ++D++ + + +VR AG +E + L D + G
Sbjct: 1 LAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHK 60
Query: 389 SHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
S + + +R +R+L DE++ E V E ++ LR
Sbjct: 61 SLAFHLRFRHPKRTLRDEEVEEAVSRVAEALR-ARGFGLR 99
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 33.2 bits (75), Expect = 0.052
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
G+G+ERL + I
Sbjct: 260 AGIGVERLVRFIVGAKHIA 278
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 32.4 bits (73), Expect = 0.095
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
F +G ERL L +P++R
Sbjct: 280 FAIGAERLTQKLLGLPNVR 298
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 32.5 bits (73), Expect = 0.099
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
G+GLER+ M D+ +IR
Sbjct: 321 GGIGLERVVMFYLDLKNIR 339
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 32.2 bits (72), Expect = 0.11
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
FGLG ERL + D+P+IR
Sbjct: 303 FGLGAERLIKQMLDLPNIR 321
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 32.4 bits (73), Expect = 0.11
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
GL+RL ++ P IR
Sbjct: 301 IAWGLDRLLALMTGSPSIR 319
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 32.0 bits (72), Expect = 0.12
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
GL+RL M+L +IR
Sbjct: 292 LAFGLDRLTMLLTGTDNIR 310
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 31.7 bits (71), Expect = 0.14
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 294 FGLGLERLAMVLFDIPDIR 312
G+G++R+ M+ + IR
Sbjct: 314 LGIGIDRMIMLFTNSHTIR 332
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB
{Escherichia coli [TaxId: 562]}
Length = 108
Score = 28.8 bits (65), Expect = 0.40
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 19/78 (24%)
Query: 101 LKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLR 160
L A YE+ N L P + V V VP ++ D Q VL
Sbjct: 10 LLRAFYEWLLDN---------QLTPHLVVDVTLPGVQVPMEYAR---------DGQIVLN 51
Query: 161 CHTSA-HQAELLKEHNHF 177
A EL + F
Sbjct: 52 IAPRAVGNLELANDEVRF 69
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 30.0 bits (67), Expect = 0.56
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 308 IPDIRLFWSSDERFTSQFSQG------QLGIKFKPFSKYPPCYKDMSFWINESFTENNL 360
+R W D F QF G + ++ +PP +++ + + L
Sbjct: 104 ARRVRDSWQEDSLFGYQFLNGANPMLLRRSVQLPARLVFPPGMEELQAQLEKELKAGTL 162
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB
{Haemophilus influenzae [TaxId: 727]}
Length = 106
Score = 28.5 bits (64), Expect = 0.62
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 9/45 (20%)
Query: 101 LKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSR 145
L A Y++ N P + V + V VP ++V
Sbjct: 8 LLRAYYDWLVDN---------SFTPYLVVDATYLGVNVPVEYVKD 43
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Length = 325
Score = 29.0 bits (64), Expect = 1.1
Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 7/127 (5%)
Query: 149 DTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRR-----DSIDSTHYPVFHQMEGV 203
++ + TVLR H H +L V D R D + Q +
Sbjct: 183 TAHWREDFTVLRLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQL 242
Query: 204 SIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFF 263
+ D E + R + + + + RW D FP P E ++
Sbjct: 243 ETIIEAYEEFSEFDTAEIGLIEPLRAMRLV--YYLAWLMRRWADPAFPKNFPWLTGEDYW 300
Query: 264 KENWLEV 270
Sbjct: 301 LRQTATF 307
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 287 LNNVAWAFGLGLERLAMVLFDIPDIR-LFWSSDERFTSQFSQGQLGIKFKPFSKY 340
L ++ GLER+AM L + ++ + W+ + ++ F + + + FS +
Sbjct: 150 LKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENE-----REFSVF 199
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 26.9 bits (59), Expect = 4.2
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 133 FDDVLVPADHV 143
FD+V +P D +
Sbjct: 262 FDNVFIPNDRI 272
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 26.0 bits (57), Expect = 5.1
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 359 NLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMER 401
+ + V+ + G+ V++VRL T+ + S M +
Sbjct: 1 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAK 43
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 25.6 bits (56), Expect = 7.3
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 376 RLIDNFTN---KKGMTSHCYRIAYRSMERSLTDEDINELQ 412
L+ F N G S I Y ++E +EL+
Sbjct: 19 ELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELE 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.420
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,670,384
Number of extensions: 80766
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 24
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)