Query 014219
Match_columns 428
No_of_seqs 156 out of 1413
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 4.4E-70 9.5E-75 480.4 39.1 413 6-428 36-449 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 2.1E-67 4.5E-72 527.7 51.6 420 1-428 1-421 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 3.3E-66 7.2E-71 514.1 50.4 407 6-428 27-437 (657)
4 PRK13410 molecular chaperone D 100.0 3.2E-65 6.9E-70 509.5 50.8 405 7-428 3-412 (668)
5 PTZ00400 DnaK-type molecular c 100.0 2.6E-65 5.6E-70 512.0 48.5 406 6-428 41-451 (663)
6 PRK00290 dnaK molecular chaper 100.0 1.5E-64 3.2E-69 507.4 51.7 403 7-428 3-410 (627)
7 PRK13411 molecular chaperone D 100.0 2E-64 4.3E-69 505.5 50.9 405 7-428 3-412 (653)
8 PLN03184 chloroplast Hsp70; Pr 100.0 3.3E-64 7.2E-69 504.1 50.6 406 6-428 39-449 (673)
9 PF00012 HSP70: Hsp70 protein; 100.0 1.4E-64 3.1E-69 511.8 47.6 411 8-428 1-414 (602)
10 TIGR01991 HscA Fe-S protein as 100.0 7.8E-64 1.7E-68 497.1 50.6 397 8-428 1-398 (599)
11 TIGR02350 prok_dnaK chaperone 100.0 9.6E-64 2.1E-68 500.2 50.6 403 7-428 1-408 (595)
12 CHL00094 dnaK heat shock prote 100.0 3.5E-63 7.5E-68 495.8 50.8 405 7-428 3-412 (621)
13 PRK05183 hscA chaperone protei 100.0 2.8E-63 6.1E-68 494.0 48.8 397 5-428 18-414 (616)
14 PRK01433 hscA chaperone protei 100.0 1.7E-58 3.7E-63 455.5 45.2 369 7-428 20-392 (595)
15 KOG0101 Molecular chaperones H 100.0 5.3E-59 1.1E-63 441.8 35.6 418 5-428 6-423 (620)
16 COG0443 DnaK Molecular chapero 100.0 1.3E-57 2.8E-62 446.5 40.4 387 5-427 4-392 (579)
17 KOG0103 Molecular chaperones H 100.0 1.5E-56 3.2E-61 420.5 33.8 418 7-428 2-424 (727)
18 KOG0102 Molecular chaperones m 100.0 4.9E-55 1.1E-59 398.5 29.7 407 5-428 26-437 (640)
19 KOG0104 Molecular chaperones G 100.0 2.4E-50 5.2E-55 379.8 36.6 406 5-417 21-440 (902)
20 PRK11678 putative chaperone; P 100.0 1.6E-49 3.4E-54 378.8 39.0 338 7-389 1-448 (450)
21 PRK13928 rod shape-determining 100.0 6.2E-38 1.4E-42 293.0 33.8 307 9-389 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.8E-37 3.9E-42 288.8 33.0 306 8-387 6-325 (335)
23 PRK13927 rod shape-determining 100.0 6.8E-36 1.5E-40 279.9 33.0 307 8-389 7-325 (334)
24 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.4E-37 5.1E-42 280.5 22.3 306 8-387 3-320 (326)
25 TIGR00904 mreB cell shape dete 100.0 1.7E-35 3.7E-40 276.5 33.2 306 9-388 5-327 (333)
26 PRK13930 rod shape-determining 100.0 3.9E-35 8.5E-40 275.2 32.5 308 8-389 10-329 (335)
27 COG1077 MreB Actin-like ATPase 100.0 1.4E-33 3E-38 245.2 26.8 311 7-391 7-334 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 5.2E-30 1.1E-34 226.0 23.1 203 117-384 36-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 7.8E-28 1.7E-32 216.1 27.7 202 120-386 66-267 (267)
30 PRK09472 ftsA cell division pr 99.9 1.8E-24 3.9E-29 207.3 24.3 196 158-388 168-388 (420)
31 TIGR01174 ftsA cell division p 99.9 2E-24 4.4E-29 204.8 23.8 194 156-385 158-371 (371)
32 COG0849 ftsA Cell division ATP 99.9 1.1E-22 2.4E-27 189.3 24.0 197 158-389 167-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.9 1.2E-20 2.6E-25 179.5 18.4 303 8-388 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.8 2.5E-20 5.5E-25 177.5 15.3 303 7-388 2-347 (373)
35 PTZ00280 Actin-related protein 99.8 2.1E-18 4.7E-23 165.7 21.3 318 1-387 1-383 (414)
36 PRK13917 plasmid segregation p 99.8 3.4E-17 7.4E-22 152.5 25.6 213 144-391 114-339 (344)
37 COG4820 EutJ Ethanolamine util 99.8 1.4E-18 2.9E-23 140.5 10.2 197 125-386 76-272 (277)
38 PTZ00452 actin; Provisional 99.8 4.5E-17 9.8E-22 153.8 20.1 302 5-388 4-349 (375)
39 TIGR03739 PRTRC_D PRTRC system 99.8 8.3E-17 1.8E-21 149.2 20.5 210 141-387 101-319 (320)
40 PF00022 Actin: Actin; InterP 99.8 3.6E-17 7.8E-22 157.2 18.7 313 5-389 3-368 (393)
41 PTZ00281 actin; Provisional 99.8 1.2E-17 2.6E-22 158.2 15.0 308 1-388 1-350 (376)
42 PTZ00004 actin-2; Provisional 99.7 1.3E-16 2.7E-21 151.5 18.2 309 1-388 1-352 (378)
43 PTZ00466 actin-like protein; P 99.7 1E-16 2.3E-21 151.5 17.2 303 6-388 12-354 (380)
44 TIGR01175 pilM type IV pilus a 99.6 4.2E-14 9.2E-19 133.6 22.8 184 155-386 142-347 (348)
45 PF11104 PilM_2: Type IV pilus 99.6 3.1E-14 6.7E-19 133.5 20.2 184 155-386 135-339 (340)
46 PF06406 StbA: StbA protein; 99.6 1.6E-14 3.6E-19 133.5 17.2 175 170-383 140-316 (318)
47 KOG0679 Actin-related protein 99.6 1E-13 2.2E-18 123.4 18.3 317 6-388 11-399 (426)
48 COG4972 PilM Tfp pilus assembl 99.5 5.7E-13 1.2E-17 117.1 18.2 184 155-386 148-352 (354)
49 COG5277 Actin and related prot 99.5 9.3E-13 2E-17 125.2 19.0 251 121-387 84-417 (444)
50 PF07520 SrfB: Virulence facto 99.4 2.8E-10 6E-15 114.9 26.9 330 52-390 331-836 (1002)
51 TIGR00241 CoA_E_activ CoA-subs 99.4 5E-11 1.1E-15 106.6 18.4 170 174-385 73-248 (248)
52 TIGR03192 benz_CoA_bzdQ benzoy 99.4 2.3E-10 5E-15 101.7 21.0 177 174-389 106-289 (293)
53 TIGR03286 methan_mark_15 putat 99.2 7.8E-10 1.7E-14 102.2 19.1 175 175-387 221-402 (404)
54 KOG0676 Actin and related prot 99.2 6.9E-11 1.5E-15 108.4 8.4 234 124-388 82-346 (372)
55 TIGR02261 benz_CoA_red_D benzo 99.1 6.6E-09 1.4E-13 91.3 18.8 173 176-386 81-262 (262)
56 COG1924 Activator of 2-hydroxy 99.1 1.7E-08 3.6E-13 91.1 20.9 171 174-390 211-392 (396)
57 KOG0677 Actin-related protein 99.1 1.8E-09 4E-14 91.5 13.0 228 140-395 99-368 (389)
58 PRK10719 eutA reactivating fac 98.9 1.6E-08 3.4E-13 95.0 12.9 83 144-245 90-184 (475)
59 PF08841 DDR: Diol dehydratase 98.9 8.3E-08 1.8E-12 82.9 13.7 193 164-387 104-330 (332)
60 PRK13317 pantothenate kinase; 98.7 2.7E-06 5.8E-11 76.6 20.6 49 340-388 223-274 (277)
61 COG4457 SrfB Uncharacterized p 98.7 8.4E-06 1.8E-10 78.5 23.9 82 303-389 744-847 (1014)
62 KOG0680 Actin-related protein 98.7 5.3E-07 1.2E-11 79.2 14.1 240 142-386 93-371 (400)
63 TIGR02259 benz_CoA_red_A benzo 98.5 3E-06 6.5E-11 77.9 14.2 175 174-386 249-432 (432)
64 PF01869 BcrAD_BadFG: BadF/Bad 98.3 0.00065 1.4E-08 61.8 24.9 72 312-386 196-271 (271)
65 KOG0797 Actin-related protein 98.2 2.3E-05 5E-10 73.3 12.0 119 116-251 196-321 (618)
66 PF06277 EutA: Ethanolamine ut 98.1 0.001 2.3E-08 63.1 21.5 106 320-425 353-468 (473)
67 TIGR00555 panK_eukar pantothen 98.1 0.0023 4.9E-08 57.5 22.7 47 338-384 229-278 (279)
68 KOG0681 Actin-related protein 98.0 6.5E-05 1.4E-09 71.0 11.9 124 118-253 92-216 (645)
69 PF14574 DUF4445: Domain of un 97.7 0.0038 8.2E-08 59.3 18.2 62 299-361 288-349 (412)
70 PF13941 MutL: MutL protein 97.4 0.00098 2.1E-08 63.9 9.0 41 8-54 2-44 (457)
71 PF02782 FGGY_C: FGGY family o 97.3 0.00047 1E-08 59.5 5.8 74 313-388 122-196 (198)
72 PF14450 FtsA: Cell division p 97.3 0.003 6.6E-08 49.4 9.5 56 204-284 1-68 (120)
73 COG0248 GppA Exopolyphosphatas 97.2 0.026 5.7E-07 55.1 17.1 59 157-221 90-148 (492)
74 PRK11031 guanosine pentaphosph 97.1 0.013 2.9E-07 57.9 14.2 79 157-246 93-171 (496)
75 PRK00976 hypothetical protein; 97.1 0.23 4.9E-06 45.6 22.7 70 314-391 243-314 (326)
76 TIGR01315 5C_CHO_kinase FGGY-f 96.8 0.006 1.3E-07 61.2 9.0 84 306-391 410-493 (541)
77 PF01968 Hydantoinase_A: Hydan 96.8 0.0028 6E-08 58.0 6.0 71 313-386 215-285 (290)
78 PRK10854 exopolyphosphatase; P 96.7 0.026 5.6E-07 56.2 12.9 77 158-246 99-176 (513)
79 TIGR00744 ROK_glcA_fam ROK fam 96.7 0.5 1.1E-05 44.0 21.1 70 314-388 231-310 (318)
80 PRK13321 pantothenate kinase; 96.7 0.1 2.2E-06 46.8 15.5 20 7-26 1-20 (256)
81 PRK15027 xylulokinase; Provisi 96.7 0.0051 1.1E-07 60.9 7.8 80 307-391 357-437 (484)
82 PLN02669 xylulokinase 96.5 0.01 2.2E-07 59.7 8.6 71 315-388 422-492 (556)
83 TIGR03706 exo_poly_only exopol 96.5 0.036 7.8E-07 51.1 11.2 76 159-246 89-164 (300)
84 COG1069 AraB Ribulose kinase [ 96.4 0.063 1.4E-06 51.9 12.7 84 307-392 399-482 (544)
85 KOG0681 Actin-related protein 96.4 0.0027 5.9E-08 60.4 3.6 68 321-388 538-614 (645)
86 KOG0678 Actin-related protein 96.4 0.11 2.3E-06 46.8 12.8 103 142-252 106-209 (415)
87 KOG2517 Ribulose kinase and re 96.3 0.083 1.8E-06 51.3 13.0 74 317-392 391-465 (516)
88 PTZ00294 glycerol kinase-like 96.3 0.015 3.2E-07 58.0 8.2 51 339-391 406-456 (504)
89 COG2971 Predicted N-acetylgluc 96.3 0.81 1.8E-05 41.3 21.0 185 168-389 94-292 (301)
90 TIGR01312 XylB D-xylulose kina 96.3 0.015 3.4E-07 57.6 8.1 51 339-391 390-440 (481)
91 PRK13318 pantothenate kinase; 96.2 0.35 7.6E-06 43.5 16.0 19 8-26 2-20 (258)
92 PRK00047 glpK glycerol kinase; 96.2 0.017 3.7E-07 57.4 8.2 51 339-391 403-453 (498)
93 PRK04123 ribulokinase; Provisi 96.2 0.015 3.3E-07 58.6 7.7 51 339-391 438-489 (548)
94 PRK09585 anmK anhydro-N-acetyl 96.2 0.07 1.5E-06 50.0 11.3 50 340-390 287-340 (365)
95 TIGR01311 glycerol_kin glycero 96.2 0.016 3.6E-07 57.5 7.8 51 339-391 399-449 (493)
96 TIGR01234 L-ribulokinase L-rib 96.1 0.02 4.3E-07 57.6 8.0 51 339-391 435-486 (536)
97 PRK10331 L-fuculokinase; Provi 96.1 0.02 4.3E-07 56.6 7.9 51 339-391 389-439 (470)
98 TIGR02628 fuculo_kin_coli L-fu 96.1 0.019 4.2E-07 56.6 7.8 51 339-391 393-443 (465)
99 smart00842 FtsA Cell division 96.1 0.012 2.6E-07 50.2 5.4 29 157-185 158-186 (187)
100 TIGR01314 gntK_FGGY gluconate 96.0 0.034 7.4E-07 55.5 9.1 80 307-391 371-451 (505)
101 PF07318 DUF1464: Protein of u 95.9 0.12 2.5E-06 47.6 11.3 53 339-391 260-318 (343)
102 TIGR02627 rhamnulo_kin rhamnul 95.9 0.028 6E-07 55.3 7.9 50 339-391 387-436 (454)
103 PLN02295 glycerol kinase 95.9 0.03 6.4E-07 56.0 8.0 51 339-391 412-462 (512)
104 COG4819 EutA Ethanolamine util 95.7 0.13 2.9E-06 46.4 10.3 103 322-425 355-467 (473)
105 PRK10939 autoinducer-2 (AI-2) 95.6 0.038 8.2E-07 55.3 7.7 51 339-391 409-459 (520)
106 PRK10640 rhaB rhamnulokinase; 95.6 0.045 9.7E-07 54.0 7.9 51 339-392 375-425 (471)
107 COG1070 XylB Sugar (pentulose 95.2 0.13 2.8E-06 51.2 9.7 52 339-391 401-452 (502)
108 COG3426 Butyrate kinase [Energ 95.1 0.41 8.9E-06 42.4 11.2 50 338-387 295-347 (358)
109 COG1521 Pantothenate kinase ty 95.1 1.4 3E-05 39.1 14.6 20 8-27 2-21 (251)
110 PLN02666 5-oxoprolinase 95.0 1.2 2.6E-05 49.0 17.0 80 305-388 453-534 (1275)
111 KOG2531 Sugar (pentulose and h 95.0 0.1 2.2E-06 49.2 7.8 55 332-388 435-489 (545)
112 PRK09557 fructokinase; Reviewe 95.0 2.9 6.3E-05 38.5 21.6 69 313-386 223-299 (301)
113 TIGR00671 baf pantothenate kin 94.8 2.7 5.8E-05 37.4 17.6 19 9-27 2-20 (243)
114 TIGR03123 one_C_unchar_1 proba 94.4 0.38 8.1E-06 44.3 9.8 19 203-221 129-147 (318)
115 COG1548 Predicted transcriptio 93.9 0.84 1.8E-05 39.9 10.3 22 201-222 129-150 (330)
116 PF03702 UPF0075: Uncharacteri 93.9 0.2 4.4E-06 47.1 7.2 72 315-389 263-338 (364)
117 PRK12408 glucokinase; Provisio 93.7 6.2 0.00014 37.0 17.6 68 314-387 251-332 (336)
118 PF02541 Ppx-GppA: Ppx/GppA ph 93.6 0.46 9.9E-06 43.5 9.0 77 159-246 75-151 (285)
119 PRK13326 pantothenate kinase; 93.6 5.3 0.00012 35.9 18.1 22 6-27 6-27 (262)
120 PTZ00288 glucokinase 1; Provis 93.4 7.9 0.00017 37.2 17.3 20 6-25 26-45 (405)
121 COG2377 Predicted molecular ch 93.3 0.95 2.1E-05 41.9 10.2 54 338-391 289-346 (371)
122 PRK13329 pantothenate kinase; 93.2 4.5 9.8E-05 36.1 14.3 18 7-24 2-19 (249)
123 PRK09605 bifunctional UGMP fam 93.0 11 0.00024 37.9 22.5 52 340-391 246-302 (535)
124 PRK13310 N-acetyl-D-glucosamin 92.5 8.6 0.00019 35.4 24.2 68 314-386 225-300 (303)
125 COG0554 GlpK Glycerol kinase [ 92.4 0.56 1.2E-05 44.9 7.7 77 314-392 376-453 (499)
126 PRK03011 butyrate kinase; Prov 92.3 0.78 1.7E-05 43.3 8.6 71 313-386 272-345 (358)
127 PF02685 Glucokinase: Glucokin 91.9 3.9 8.4E-05 37.9 12.5 128 118-254 37-181 (316)
128 PF14450 FtsA: Cell division p 91.8 0.09 1.9E-06 41.1 1.5 21 8-28 1-21 (120)
129 TIGR01319 glmL_fam conserved h 91.4 0.25 5.5E-06 47.3 4.3 64 155-221 193-268 (463)
130 PRK09698 D-allose kinase; Prov 91.3 12 0.00026 34.5 20.2 68 315-387 217-295 (302)
131 PRK14101 bifunctional glucokin 89.8 5.5 0.00012 41.1 12.7 20 5-24 17-36 (638)
132 PRK00180 acetate kinase A/prop 89.2 2.4 5.2E-05 40.5 8.7 49 313-364 300-349 (402)
133 COG5026 Hexokinase [Carbohydra 88.7 11 0.00025 35.9 12.5 32 158-189 184-217 (466)
134 PF08735 DUF1786: Putative pyr 88.7 4.1 8.8E-05 36.0 9.1 99 141-250 113-213 (254)
135 COG4012 Uncharacterized protei 88.5 5.1 0.00011 35.3 9.4 72 173-255 207-278 (342)
136 PRK12440 acetate kinase; Revie 88.3 24 0.00053 33.6 19.3 48 313-364 298-346 (397)
137 PLN02405 hexokinase 87.7 2.7 5.9E-05 41.4 8.3 33 158-190 208-242 (497)
138 PRK07058 acetate kinase; Provi 87.7 4.3 9.4E-05 38.5 9.2 49 312-364 295-344 (396)
139 TIGR03281 methan_mark_12 putat 87.4 3 6.4E-05 37.7 7.6 49 340-391 263-314 (326)
140 PLN02920 pantothenate kinase 1 87.2 4.8 0.0001 38.1 9.1 52 338-389 296-353 (398)
141 TIGR00016 ackA acetate kinase. 86.7 3.9 8.5E-05 38.9 8.5 49 313-364 304-353 (404)
142 COG0145 HyuA N-methylhydantoin 86.6 1.9 4.1E-05 44.2 6.7 45 171-222 254-298 (674)
143 PLN02362 hexokinase 86.2 5.6 0.00012 39.4 9.6 34 157-190 207-242 (509)
144 PLN02914 hexokinase 86.1 4.7 0.0001 39.6 8.9 33 158-190 208-242 (490)
145 PF00370 FGGY_N: FGGY family o 85.7 1 2.2E-05 40.1 4.0 20 7-26 1-20 (245)
146 PF02543 CmcH_NodU: Carbamoylt 85.7 33 0.00072 32.5 19.6 83 305-391 132-216 (360)
147 TIGR00143 hypF [NiFe] hydrogen 85.2 3.1 6.7E-05 43.2 7.6 49 339-387 658-711 (711)
148 PTZ00340 O-sialoglycoprotein e 85.0 34 0.00074 32.1 18.0 93 141-246 70-165 (345)
149 PRK14878 UGMP family protein; 85.0 33 0.00072 32.0 19.2 33 340-372 242-276 (323)
150 smart00732 YqgFc Likely ribonu 84.8 0.96 2.1E-05 33.6 3.0 19 7-25 2-20 (99)
151 PTZ00297 pantothenate kinase; 84.7 80 0.0017 36.1 22.8 49 338-386 1390-1444(1452)
152 COG0533 QRI7 Metal-dependent p 84.3 35 0.00076 31.7 18.1 243 117-387 41-317 (342)
153 KOG2708 Predicted metalloprote 84.2 21 0.00045 30.9 10.7 62 318-385 238-301 (336)
154 TIGR02707 butyr_kinase butyrat 83.3 5.3 0.00011 37.7 7.7 71 312-385 269-342 (351)
155 PF13941 MutL: MutL protein 82.5 16 0.00034 35.7 10.7 28 204-231 2-29 (457)
156 COG1940 NagC Transcriptional r 82.1 42 0.00092 31.0 23.1 72 313-389 226-308 (314)
157 PF00349 Hexokinase_1: Hexokin 81.8 7.1 0.00015 33.7 7.4 32 158-189 171-205 (206)
158 COG1070 XylB Sugar (pentulose 81.6 1.8 3.9E-05 43.2 4.2 22 5-26 3-24 (502)
159 PRK00292 glk glucokinase; Prov 81.5 45 0.00097 30.9 23.1 54 166-219 88-145 (316)
160 PF03652 UPF0081: Uncharacteri 81.1 2.1 4.5E-05 34.1 3.6 21 6-26 1-21 (135)
161 PRK00047 glpK glycerol kinase; 80.3 1.8 4E-05 43.1 3.8 20 6-25 5-24 (498)
162 PRK13331 pantothenate kinase; 79.4 2.6 5.6E-05 37.5 4.0 27 1-27 2-28 (251)
163 PRK07157 acetate kinase; Provi 79.2 13 0.00028 35.5 8.7 49 313-364 297-346 (400)
164 PRK05082 N-acetylmannosamine k 78.0 8.8 0.00019 35.1 7.3 71 312-387 211-287 (291)
165 PTZ00107 hexokinase; Provision 76.7 55 0.0012 32.2 12.5 34 157-190 196-231 (464)
166 PRK10331 L-fuculokinase; Provi 76.4 2.3 4.9E-05 42.1 3.1 20 6-25 2-21 (470)
167 TIGR03722 arch_KAE1 universal 76.2 67 0.0015 29.9 19.7 42 340-381 243-289 (322)
168 PRK00109 Holliday junction res 75.2 3.9 8.4E-05 32.7 3.6 22 5-26 3-24 (138)
169 KOG1369 Hexokinase [Carbohydra 74.8 17 0.00036 35.5 8.2 58 155-222 191-251 (474)
170 PLN02596 hexokinase-like 74.4 15 0.00032 36.3 8.0 35 156-190 206-242 (490)
171 PRK10939 autoinducer-2 (AI-2) 73.7 3.2 7E-05 41.6 3.4 21 6-26 3-23 (520)
172 COG4020 Uncharacterized protei 73.4 65 0.0014 28.5 11.0 36 380-420 141-176 (332)
173 PTZ00294 glycerol kinase-like 73.2 3.6 7.7E-05 41.1 3.6 20 7-26 3-22 (504)
174 COG2192 Predicted carbamoyl tr 72.7 1.1E+02 0.0023 30.6 19.2 210 168-391 110-338 (555)
175 TIGR02628 fuculo_kin_coli L-fu 72.5 3.6 7.8E-05 40.6 3.4 20 7-26 2-21 (465)
176 cd06007 R3H_DEXH_helicase R3H 72.2 15 0.00033 24.4 5.2 29 144-172 16-44 (59)
177 PRK04123 ribulokinase; Provisi 71.0 4.6 9.9E-05 40.8 3.8 19 6-24 3-21 (548)
178 PF03630 Fumble: Fumble ; Int 70.8 95 0.0021 29.2 14.6 48 339-386 287-340 (341)
179 PRK15027 xylulokinase; Provisi 70.5 3.9 8.5E-05 40.6 3.2 19 7-25 1-19 (484)
180 TIGR02259 benz_CoA_red_A benzo 70.5 3.9 8.5E-05 38.7 2.9 22 6-27 2-23 (432)
181 TIGR01311 glycerol_kin glycero 70.3 4.3 9.4E-05 40.4 3.4 21 6-26 1-21 (493)
182 TIGR00329 gcp_kae1 metallohydr 69.8 93 0.002 28.7 14.9 39 320-363 244-282 (305)
183 PRK12379 propionate/acetate ki 69.4 25 0.00054 33.6 8.0 48 313-364 295-343 (396)
184 TIGR03723 bact_gcp putative gl 69.3 14 0.0003 34.3 6.3 57 322-383 247-308 (314)
185 TIGR01234 L-ribulokinase L-rib 69.1 5 0.00011 40.5 3.6 18 7-24 2-19 (536)
186 PLN02295 glycerol kinase 68.7 4.6 0.0001 40.4 3.2 19 7-25 1-19 (512)
187 TIGR01314 gntK_FGGY gluconate 68.0 4.8 0.0001 40.2 3.2 19 7-25 1-19 (505)
188 COG0816 Predicted endonuclease 67.2 6.6 0.00014 31.4 3.2 21 6-26 2-22 (141)
189 PRK09604 UGMP family protein; 66.0 1.2E+02 0.0025 28.5 28.3 53 339-391 254-311 (332)
190 PRK13322 pantothenate kinase; 65.8 42 0.0009 29.9 8.4 18 8-25 2-19 (246)
191 PRK13328 pantothenate kinase; 65.7 38 0.00083 30.3 8.1 20 7-26 2-21 (255)
192 cd00529 RuvC_resolvase Hollida 64.6 9.8 0.00021 31.1 3.9 24 8-31 2-27 (154)
193 PLN02669 xylulokinase 64.6 7.2 0.00016 39.5 3.7 22 5-26 7-28 (556)
194 KOG1385 Nucleoside phosphatase 64.5 16 0.00034 34.7 5.4 98 123-220 119-231 (453)
195 PRK13311 N-acetyl-D-glucosamin 64.5 1.1E+02 0.0023 27.4 11.7 115 7-212 1-133 (256)
196 cd02640 R3H_NRF R3H domain of 63.3 35 0.00075 22.8 5.6 29 144-172 17-45 (60)
197 TIGR01315 5C_CHO_kinase FGGY-f 62.7 7.1 0.00015 39.4 3.3 18 8-25 2-19 (541)
198 COG2441 Predicted butyrate kin 62.3 37 0.0008 30.5 7.0 54 338-391 272-335 (374)
199 PRK12397 propionate kinase; Re 61.6 34 0.00074 32.7 7.3 48 313-364 299-347 (404)
200 PRK13331 pantothenate kinase; 61.5 81 0.0017 28.2 9.2 19 342-362 206-224 (251)
201 PF00480 ROK: ROK family; Int 61.3 93 0.002 25.7 9.8 44 169-220 92-135 (179)
202 KOG0797 Actin-related protein 58.5 2.9 6.3E-05 40.3 -0.3 52 340-391 527-592 (618)
203 PRK13320 pantothenate kinase; 58.2 14 0.00029 32.9 3.9 21 7-27 3-23 (244)
204 PRK00039 ruvC Holliday junctio 57.2 11 0.00024 31.2 2.9 19 6-24 2-20 (164)
205 TIGR01319 glmL_fam conserved h 57.1 83 0.0018 30.7 9.1 48 207-255 1-48 (463)
206 KOG2872 Uroporphyrinogen decar 56.8 45 0.00098 30.1 6.6 69 304-377 218-287 (359)
207 cd02639 R3H_RRM R3H domain of 56.4 38 0.00081 22.6 4.8 30 143-172 16-45 (60)
208 PF14574 DUF4445: Domain of un 56.3 30 0.00064 33.4 6.0 46 312-357 56-101 (412)
209 KOG2517 Ribulose kinase and re 55.1 18 0.00038 35.7 4.3 19 6-24 6-24 (516)
210 PF02075 RuvC: Crossover junct 54.0 24 0.00053 28.6 4.4 17 8-24 1-17 (149)
211 PF00349 Hexokinase_1: Hexokin 52.5 25 0.00054 30.4 4.5 25 200-224 61-85 (206)
212 TIGR03281 methan_mark_12 putat 52.4 62 0.0014 29.6 6.9 68 340-420 103-170 (326)
213 COG5026 Hexokinase [Carbohydra 51.9 69 0.0015 30.8 7.4 28 200-227 73-101 (466)
214 PRK13320 pantothenate kinase; 49.1 66 0.0014 28.6 6.7 10 342-351 206-215 (244)
215 PRK13324 pantothenate kinase; 48.9 80 0.0017 28.4 7.2 19 8-26 2-20 (258)
216 PRK13324 pantothenate kinase; 48.2 21 0.00046 32.0 3.5 36 342-388 217-252 (258)
217 cd02641 R3H_Smubp-2_like R3H d 48.2 67 0.0014 21.4 5.0 29 144-172 17-45 (60)
218 TIGR00250 RNAse_H_YqgF RNAse H 47.8 13 0.00029 29.3 1.9 17 9-25 1-17 (130)
219 KOG1794 N-Acetylglucosamine ki 46.6 2.3E+02 0.005 25.9 20.1 81 312-392 234-320 (336)
220 COG4020 Uncharacterized protei 46.2 21 0.00046 31.4 2.9 51 338-391 267-321 (332)
221 PF03309 Pan_kinase: Type III 45.7 27 0.00059 30.1 3.7 21 8-28 1-21 (206)
222 PRK13321 pantothenate kinase; 44.6 1E+02 0.0022 27.6 7.3 17 204-220 2-18 (256)
223 cd02646 R3H_G-patch R3H domain 44.4 69 0.0015 21.0 4.7 28 144-172 16-43 (58)
224 PLN02377 3-ketoacyl-CoA syntha 43.3 68 0.0015 31.9 6.4 55 310-364 164-219 (502)
225 PLN02902 pantothenate kinase 42.6 1.7E+02 0.0037 31.1 9.2 51 338-388 345-401 (876)
226 smart00732 YqgFc Likely ribonu 40.4 68 0.0015 23.4 4.8 21 204-224 3-23 (99)
227 KOG1369 Hexokinase [Carbohydra 38.6 1.8E+02 0.004 28.6 8.3 26 200-225 84-109 (474)
228 COG1940 NagC Transcriptional r 38.0 1.6E+02 0.0034 27.1 7.9 54 201-254 5-58 (314)
229 PRK13318 pantothenate kinase; 36.5 1.6E+02 0.0035 26.3 7.4 17 204-220 2-18 (258)
230 COG0020 UppS Undecaprenyl pyro 35.2 3E+02 0.0064 24.5 8.5 72 274-355 121-203 (245)
231 COG4126 Hydantoin racemase [Am 35.0 2.4E+02 0.0052 24.6 7.5 47 343-391 177-223 (230)
232 PF07085 DRTGG: DRTGG domain; 34.9 46 0.001 24.9 3.1 38 340-379 62-99 (105)
233 PTZ00107 hexokinase; Provision 34.8 1.4E+02 0.0031 29.4 7.1 25 200-224 72-96 (464)
234 TIGR02627 rhamnulo_kin rhamnul 34.4 19 0.00042 35.3 1.2 17 9-25 1-17 (454)
235 PF05378 Hydant_A_N: Hydantoin 34.3 39 0.00085 28.3 2.8 18 9-26 2-19 (176)
236 PLN02854 3-ketoacyl-CoA syntha 34.1 1.2E+02 0.0025 30.5 6.4 54 311-364 181-235 (521)
237 COG0554 GlpK Glycerol kinase [ 33.9 43 0.00094 32.6 3.3 21 5-25 4-24 (499)
238 PF04848 Pox_A22: Poxvirus A22 33.9 75 0.0016 25.6 4.1 26 6-31 1-28 (143)
239 COG1069 AraB Ribulose kinase [ 33.5 41 0.00088 33.3 3.1 20 6-25 3-22 (544)
240 PRK13322 pantothenate kinase; 33.0 43 0.00092 29.8 3.0 65 312-387 179-243 (246)
241 PF08392 FAE1_CUT1_RppA: FAE1/ 32.9 3.4E+02 0.0075 24.8 8.6 54 311-364 76-130 (290)
242 PLN03170 chalcone synthase; Pr 32.4 1.9E+02 0.0042 27.9 7.6 55 310-364 97-153 (401)
243 TIGR02707 butyr_kinase butyrat 32.3 94 0.002 29.4 5.3 26 204-229 2-27 (351)
244 TIGR01198 pgl 6-phosphoglucono 32.2 88 0.0019 27.5 4.9 46 313-363 7-52 (233)
245 TIGR01865 cas_Csn1 CRISPR-asso 32.2 38 0.00083 36.0 2.9 20 7-26 2-21 (805)
246 PLN02920 pantothenate kinase 1 31.8 4.6E+02 0.01 25.2 9.5 47 338-388 95-141 (398)
247 PF05378 Hydant_A_N: Hydantoin 31.4 1.5E+02 0.0031 24.9 5.8 24 205-228 2-25 (176)
248 TIGR01312 XylB D-xylulose kina 30.9 32 0.0007 34.0 2.1 17 9-25 1-17 (481)
249 COG0068 HypF Hydrogenase matur 30.8 1.6E+02 0.0035 30.4 6.7 50 338-387 692-746 (750)
250 PRK11199 tyrA bifunctional cho 30.5 4.9E+02 0.011 24.8 10.6 15 240-254 13-27 (374)
251 COG3734 DgoK 2-keto-3-deoxy-ga 30.2 93 0.002 28.2 4.5 73 305-386 227-299 (306)
252 PLN03173 chalcone synthase; Pr 30.1 2.2E+02 0.0048 27.4 7.5 57 309-366 92-150 (391)
253 PF00871 Acetate_kinase: Aceto 29.8 1.1E+02 0.0024 29.4 5.4 49 312-363 296-345 (388)
254 PF01182 Glucosamine_iso: Gluc 29.3 1.4E+02 0.0029 25.6 5.4 42 316-362 3-44 (199)
255 COG3894 Uncharacterized metal- 28.6 2.2E+02 0.0049 28.1 7.0 48 201-248 163-211 (614)
256 TIGR00228 ruvC crossover junct 28.5 42 0.0009 27.5 1.9 17 8-24 1-17 (156)
257 COG0282 ackA Acetate kinase [E 28.5 2E+02 0.0043 27.4 6.4 46 314-363 298-344 (396)
258 COG4012 Uncharacterized protei 28.3 55 0.0012 29.1 2.7 48 370-425 208-255 (342)
259 PF01548 DEDD_Tnp_IS110: Trans 28.3 1E+02 0.0023 24.4 4.3 20 8-27 1-20 (144)
260 PF07722 Peptidase_C26: Peptid 27.8 33 0.00071 29.9 1.4 53 340-393 59-127 (217)
261 cd01741 GATase1_1 Subgroup of 27.6 51 0.0011 27.7 2.5 48 338-391 45-100 (188)
262 COG0837 Glk Glucokinase [Carbo 27.5 4.9E+02 0.011 24.0 16.8 259 2-361 3-278 (320)
263 PRK06895 putative anthranilate 27.5 59 0.0013 27.5 2.9 45 340-391 44-91 (190)
264 PLN03172 chalcone synthase fam 26.7 2.5E+02 0.0054 27.1 7.2 48 317-364 101-149 (393)
265 PF13788 DUF4180: Domain of un 25.7 2.4E+02 0.0052 21.7 5.5 71 304-379 39-111 (113)
266 cd01400 6PGL 6PGL: 6-Phosphogl 25.7 98 0.0021 26.9 4.0 43 315-362 4-46 (219)
267 COG2071 Predicted glutamine am 25.6 77 0.0017 27.9 3.2 16 340-355 61-76 (243)
268 PLN02914 hexokinase 25.6 2.4E+02 0.0051 28.1 6.9 24 200-223 93-116 (490)
269 PF01150 GDA1_CD39: GDA1/CD39 25.5 86 0.0019 30.6 3.9 50 172-221 129-183 (434)
270 PRK02228 V-type ATP synthase s 25.5 2.7E+02 0.0059 20.7 5.7 41 322-368 58-98 (100)
271 PTZ00340 O-sialoglycoprotein e 25.4 1.4E+02 0.0029 28.2 5.0 60 313-373 44-109 (345)
272 TIGR03722 arch_KAE1 universal 24.9 1.3E+02 0.0028 28.0 4.8 66 313-380 40-111 (322)
273 PRK14878 UGMP family protein; 24.7 1.1E+02 0.0025 28.4 4.4 66 313-380 39-110 (323)
274 PF02685 Glucokinase: Glucokin 24.6 97 0.0021 28.8 3.9 45 205-252 1-48 (316)
275 cd01745 GATase1_2 Subgroup of 24.5 61 0.0013 27.4 2.4 46 340-391 54-119 (189)
276 PF00814 Peptidase_M22: Glycop 24.3 5.3E+02 0.011 23.2 16.8 40 319-363 206-245 (268)
277 PRK15080 ethanolamine utilizat 24.0 1.8E+02 0.0039 26.2 5.4 44 200-243 22-65 (267)
278 TIGR00329 gcp_kae1 metallohydr 24.0 1.3E+02 0.0028 27.8 4.6 66 313-380 43-114 (305)
279 PLN02192 3-ketoacyl-CoA syntha 23.8 2.6E+02 0.0055 28.0 6.7 54 311-364 169-223 (511)
280 COG0533 QRI7 Metal-dependent p 23.8 2.2E+02 0.0048 26.6 5.9 59 312-371 44-108 (342)
281 COG3513 Predicted CRISPR-assoc 23.5 75 0.0016 33.2 3.0 22 5-26 3-24 (1088)
282 PF04481 DUF561: Protein of un 23.5 2.8E+02 0.0061 24.1 5.9 54 114-174 97-150 (242)
283 PF01424 R3H: R3H domain; Int 23.2 2.1E+02 0.0046 18.8 4.4 26 146-172 22-47 (63)
284 TIGR00555 panK_eukar pantothen 22.7 5.9E+02 0.013 23.2 9.2 59 340-405 50-108 (279)
285 PF03630 Fumble: Fumble ; Int 22.5 3.7E+02 0.008 25.3 7.3 48 338-389 82-129 (341)
286 PLN00130 succinate dehydrogena 22.3 10 0.00022 31.2 -2.5 21 6-26 57-77 (213)
287 TIGR03723 bact_gcp putative gl 22.0 1.5E+02 0.0032 27.5 4.6 65 314-380 45-115 (314)
288 PF00814 Peptidase_M22: Glycop 21.5 1.5E+02 0.0032 26.8 4.4 69 314-384 25-99 (268)
289 PRK03011 butyrate kinase; Prov 21.4 1.1E+02 0.0024 29.0 3.6 23 6-28 2-24 (358)
290 PTZ00297 pantothenate kinase; 21.3 6.7E+02 0.014 29.1 10.1 46 338-387 1137-1182(1452)
291 PLN03168 chalcone synthase; Pr 21.3 3.2E+02 0.007 26.2 6.8 57 309-366 91-149 (389)
292 KOG1559 Gamma-glutamyl hydrola 21.2 64 0.0014 28.2 1.8 50 340-390 112-165 (340)
293 PRK09698 D-allose kinase; Prov 21.1 4.6E+02 0.0099 23.9 7.7 27 201-227 3-29 (302)
294 PF00994 MoCF_biosynth: Probab 20.6 2.2E+02 0.0048 22.6 4.9 23 341-363 58-82 (144)
295 PRK09057 coproporphyrinogen II 20.4 2.7E+02 0.006 26.6 6.2 75 338-427 54-137 (380)
296 cd01747 GATase1_Glutamyl_Hydro 20.3 1.7E+02 0.0037 26.5 4.5 52 340-392 55-112 (273)
297 TIGR00103 DNA_YbaB_EbfC DNA-bi 20.2 1.7E+02 0.0037 21.9 3.7 42 271-312 16-63 (102)
298 PRK05628 coproporphyrinogen II 20.1 1.6E+02 0.0034 28.1 4.5 94 318-426 38-140 (375)
299 PF04312 DUF460: Protein of un 20.1 2.2E+02 0.0047 22.7 4.3 25 4-28 30-54 (138)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-70 Score=480.38 Aligned_cols=413 Identities=56% Similarity=0.922 Sum_probs=400.2
Q ss_pred ceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
..+||||+||||++++++.+|..+++.+.+|+|.+||.|+|.++++++|+.|.++...+|++++...|+++|+.+++..+
T Consensus 36 gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~v 115 (663)
T KOG0100|consen 36 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSV 115 (663)
T ss_pred ceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCeeEEECCCCCceEEEEEC-CeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYK-GKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
+.+++.|||.++ +.++++.++++.. ++...++|+++.+|.|.++++.|+.+++..+...++|||++|...+|++.++|
T Consensus 116 q~Dik~~Pfkvv-~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDA 194 (663)
T KOG0100|consen 116 QKDIKFLPFKVV-NKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDA 194 (663)
T ss_pred hhhhhcCceEEE-cCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhccc
Confidence 999999999988 6688999999987 66888999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
-..||+..++++.||.|||++|+.+... ..++++|+|+||||+|++++.+.++.|++++..+...+||.++|+
T Consensus 195 GtIAgLnV~RIiNePTaAAIAYGLDKk~-------gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~ 267 (663)
T KOG0100|consen 195 GTIAGLNVVRIINEPTAAAIAYGLDKKD-------GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQ 267 (663)
T ss_pred ceeccceEEEeecCccHHHHHhcccccC-------CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHH
Confidence 9999999999999999999999998876 478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIE 324 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~ 324 (428)
++++++...|.++.+.+++.+-+...+|+.++|++|+.||+.....+.++.+++|.+++-++||..|+++--+++.+...
T Consensus 268 rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~Tlk 347 (663)
T KOG0100|consen 268 RVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLK 347 (663)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEee
Q 014219 325 HVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILD 404 (428)
Q Consensus 325 ~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~ 404 (428)
.++.+|+.++....+++.|+|+||+.|+|-+|++++..|.|+......||++|||+|||..+..++| -..-.++++.+
T Consensus 348 Pv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsG--ee~t~divLLD 425 (663)
T KOG0100|consen 348 PVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSG--EEDTGDIVLLD 425 (663)
T ss_pred HHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccc--ccCcCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 57779999999
Q ss_pred cccceeeeEEcCCcccEEEeCCCC
Q 014219 405 LKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
++|.+.||++.+|.+-.+||||+.
T Consensus 426 v~pLtlGIETvGGVMTklI~RNTv 449 (663)
T KOG0100|consen 426 VNPLTLGIETVGGVMTKLIPRNTV 449 (663)
T ss_pred eccccceeeeecceeeccccCCcc
Confidence 999999999999999999999984
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.1e-67 Score=527.67 Aligned_cols=420 Identities=63% Similarity=0.990 Sum_probs=392.2
Q ss_pred CCCCCceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCC
Q 014219 1 MAGKAGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRF 80 (428)
Q Consensus 1 m~~~~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~ 80 (428)
|. +..+|||||||+|+++|++.++.++++.+..|++.+||+|+|.++++++|..|..+...+|.+++..+|+++|+..
T Consensus 1 ~~--~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 78 (653)
T PTZ00009 1 MT--KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKF 78 (653)
T ss_pred CC--cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCC
Confidence 64 5789999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHH
Q 014219 81 SDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQA 160 (428)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~ 160 (428)
.+..++...+.|||.+..++++...+.+.+.+....++++++++++|++|++.++.+++.++..+|+|||++|+..+|+.
T Consensus 79 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a 158 (653)
T PTZ00009 79 DDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQA 158 (653)
T ss_pred CchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHH
Confidence 99999999999999999889999999999888778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchH
Q 014219 161 TEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGV 240 (428)
Q Consensus 161 l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~ 240 (428)
+++|++.||++.+.+++||.|||++|...... ....+++|+|+||||+|++++++.++.+++++..+...+||.
T Consensus 159 ~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~------~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~ 232 (653)
T PTZ00009 159 TKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG------DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGE 232 (653)
T ss_pred HHHHHHHcCCceeEEecchHHHHHHHhhhccC------CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChH
Confidence 99999999999999999999999999875432 126789999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHhhh-CCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHH
Q 014219 241 DFNNRMVDYFVEEFKRKN-KIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLF 319 (428)
Q Consensus 241 ~id~~l~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 319 (428)
+||..|++++.+++..+. ..++..+++.+.+|+.+||++|+.|+......+.++.++++.++++.|||++|+++++|++
T Consensus 233 d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~ 312 (653)
T PTZ00009 233 DFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYF 312 (653)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHH
Confidence 999999999999998765 3556678899999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcc
Q 014219 320 EKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAED 399 (428)
Q Consensus 320 ~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~ 399 (428)
+++.+.+.++|+.++....+++.|+|+||+|++|++++.|++.|++..+....||+++||+|||++|+.+++...+++.+
T Consensus 313 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~ 392 (653)
T PTZ00009 313 RNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQD 392 (653)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccc
Confidence 99999999999999988889999999999999999999999999767788889999999999999999999855577889
Q ss_pred eEEeecccceeeeEEcCCcccEEEeCCCC
Q 014219 400 LVILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+.+++|+++|++..++.+.+|||+|++
T Consensus 393 ~~~~dv~p~slgi~~~~~~~~~ii~~~t~ 421 (653)
T PTZ00009 393 LLLLDVTPLSLGLETAGGVMTKLIERNTT 421 (653)
T ss_pred eEEEeecccccCccccCCceEEEEeCCCc
Confidence 99999999999999999999999999985
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.3e-66 Score=514.10 Aligned_cols=407 Identities=43% Similarity=0.721 Sum_probs=375.5
Q ss_pred ceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
..+|||||||||+++|++.++.++++++..|.+.+||+|+|.++++++|..|..+...+|.++++.+|+++|+...+..+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
...++.+||.+..++++...+.. .. ...++++++.+++|++++..++.+++.++..+|+|||++|+..+|+.+++|+
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~-~~--~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD-GN--GKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe-CC--CeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999888777766553 22 2458999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.||++.+.++.||.|||++|...... +..++|+|+||||+|++++++.++.+++++..+...+||.+||+.
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~--------~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~ 255 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTK--------DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLA 255 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCC--------CCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHH
Confidence 999999999999999999999876543 678999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccC----cceeEEeeHHHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEG----INFSSTITRARFEQLNMDLFEK 321 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~i~~ 321 (428)
|.+++..++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+..+ .++.+.|||++|+++++|++++
T Consensus 256 l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r 335 (657)
T PTZ00186 256 LSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIER 335 (657)
T ss_pred HHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHH
Confidence 999999999988887777788999999999999999999988888888765432 3578899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceE
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLV 401 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~ 401 (428)
+...+.++|+.++....+++.|+|+||+|++|.|++.|++.| +..+....||+++||.|||++|+.+++. .+++.
T Consensus 336 ~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~ 410 (657)
T PTZ00186 336 SIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLV 410 (657)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceE
Confidence 999999999999998889999999999999999999999999 5666788999999999999999999883 46789
Q ss_pred EeecccceeeeEEcCCcccEEEeCCCC
Q 014219 402 ILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+++|+|+|+++.+|.+.+|||||++
T Consensus 411 l~Dv~p~slgie~~~g~~~~iI~rnt~ 437 (657)
T PTZ00186 411 LLDVTPLSLGIETLGGVFTRMIPKNTT 437 (657)
T ss_pred EEeeccccccceecCCEEEEEEeCCCE
Confidence 999999999999999999999999985
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.2e-65 Score=509.55 Aligned_cols=405 Identities=44% Similarity=0.689 Sum_probs=370.1
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEe-CCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFT-DTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
.+|||||||+||++|++.+|.+.++.+..|.+.+||+|+|. ++++++|..|..+...+|.++++.+|+++|+...+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 69999999999999999999999999999999999999996 56899999999999999999999999999998755 3
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
......+||.+..++++...+.+...+ ..++++++++++|++|++.+..+++.++..+|+|||++|+..+|+.+++|+
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 445677899998888887776664333 469999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.||+..+.++.||+|||++|...... +.+++|+|+||||+|++++++.++.+++++..+...+||.+||..
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~~--------~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRSS--------SQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccCC--------CCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 999999999999999999999876533 678999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccC----cceeEEeeHHHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEG----INFSSTITRARFEQLNMDLFEK 321 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~i~~ 321 (428)
|.+++..++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+..+ .++...+||++|++++++++++
T Consensus 231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r 310 (668)
T PRK13410 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDR 310 (668)
T ss_pred HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHH
Confidence 999999999888777777788999999999999999999988888888876543 3567899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceE
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLV 401 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~ 401 (428)
+...+.++|+.++....+++.|+|+||+|++|++++.|++.| +..+....||+++||+|||++|+.+++. ++++.
T Consensus 311 ~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~ 385 (668)
T PRK13410 311 LLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLL 385 (668)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----cccee
Confidence 999999999999988889999999999999999999999999 6777888899999999999999999883 47889
Q ss_pred EeecccceeeeEEcCCcccEEEeCCCC
Q 014219 402 ILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+++|+++|+++.+|.+.+|||+|++
T Consensus 386 l~Dv~p~slgie~~~g~~~~li~rnt~ 412 (668)
T PRK13410 386 LLDVTPLSLGLETIGGVMKKLIPRNTT 412 (668)
T ss_pred EEeeccccccceecCCeeEEEEeCCCc
Confidence 999999999999999999999999985
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.6e-65 Score=511.99 Aligned_cols=406 Identities=45% Similarity=0.756 Sum_probs=374.3
Q ss_pred ceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEe-CCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFT-DTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
..+|||||||+|+++|++.++.++++.+..|.+.+||+|+|. ++.+++|..|..+...+|.++++.+|+++|+...+..
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 369999999999999999999999999999999999999996 4688999999999999999999999999999999988
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
++...+.+||.+..++++...+.+ .+. .++++++.+++|+++++.+..+++.++..+|+|||++|+..+|+.+++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~--~~~--~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEA--QGK--KYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEE--CCE--EECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 888889999999888887776665 343 5899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
++.||++.+.++.||.|||++|...... +..++|+|+||||+|++++++.++.+++++..+...+||.+||+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~~--------~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~ 268 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKND--------GKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQ 268 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccCC--------CcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHH
Confidence 9999999999999999999999876533 77899999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccC----cceeEEeeHHHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEG----INFSSTITRARFEQLNMDLFE 320 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~i~ 320 (428)
.|.+++..++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+..+ .++.+.+||++|+++++|+++
T Consensus 269 ~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~ 348 (663)
T PTZ00400 269 RILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLK 348 (663)
T ss_pred HHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHH
Confidence 9999999999888777777888999999999999999999888888887765433 357889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcce
Q 014219 321 KCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDL 400 (428)
Q Consensus 321 ~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~ 400 (428)
++.+.+.++|+.++..+.+++.|+|+||+|++|+|++.|++.| +..+....||+++||+|||++|+.+++. .+++
T Consensus 349 ~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~ 423 (663)
T PTZ00400 349 KTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDL 423 (663)
T ss_pred HHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccce
Confidence 9999999999999988889999999999999999999999999 6677888999999999999999999883 4788
Q ss_pred EEeecccceeeeEEcCCcccEEEeCCCC
Q 014219 401 VILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
.+.+++|+++|+++.+|.+.+|||+|++
T Consensus 424 ~~~dv~p~slgi~~~~g~~~~ii~~~t~ 451 (663)
T PTZ00400 424 LLLDVTPLSLGIETLGGVFTRLINRNTT 451 (663)
T ss_pred EEEeccccceEEEecCCeeEEEEecCcc
Confidence 9999999999999999999999999985
No 6
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.5e-64 Score=507.35 Aligned_cols=403 Identities=49% Similarity=0.784 Sum_probs=370.9
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEe-CCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFT-DTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
.+|||||||||+++|++.+|.+.++.+..|++.+||+|+|. ++.+++|..|..+...+|.+++..+|+++|+. ...+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 69999999999999999999999999999999999999996 67899999999999999999999999999988 4556
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
....+.+||.+..++++...+.+ ++. .++++++++++|+++++.+..+++.++..+|+|||++|+..+|+.+++|+
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~~--~~~--~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVEI--DGK--KYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEEE--CCE--EEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 77788999999988777666554 453 58999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.||++.+.+++||+|||++|..... .+..++|+|+||||+|++++++.++.+++++..+...+||.+||+.
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~--------~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~ 228 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK--------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQR 228 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC--------CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHH
Confidence 99999999999999999999987653 2688999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccC----cceeEEeeHHHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEG----INFSSTITRARFEQLNMDLFEK 321 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~i~~ 321 (428)
|++++.+++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+..+ .++.+.|||++|+++++|++++
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~ 308 (627)
T PRK00290 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVER 308 (627)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHH
Confidence 999999999988887777889999999999999999999988888888765432 4578899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceE
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLV 401 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~ 401 (428)
+...+.++|+.++....+++.|+|+||+|++|+|++.|++.| +.++....||+++||+|||++|+.+++. .+++.
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~ 383 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVL 383 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----cccee
Confidence 999999999999988889999999999999999999999999 7778889999999999999999999883 47889
Q ss_pred EeecccceeeeEEcCCcccEEEeCCCC
Q 014219 402 ILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+++|+++|+++.+|.+.+|||+|++
T Consensus 384 ~~d~~~~slgi~~~~~~~~~ii~~~t~ 410 (627)
T PRK00290 384 LLDVTPLSLGIETLGGVMTKLIERNTT 410 (627)
T ss_pred eeeccceEEEEEecCCeEEEEecCCCc
Confidence 999999999999999999999999985
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2e-64 Score=505.46 Aligned_cols=405 Identities=48% Similarity=0.748 Sum_probs=368.7
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeC-CceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTD-TESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
.+|||||||+|+++|++.+|.+.++.+..|++.+||+|+|.+ +++++|..|..+...+|.++++++|+++|+...+...
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEE 82 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhH
Confidence 699999999999999999999999999999999999999964 5889999999999999999999999999998877543
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
..+.+|+..+.+.++...+.+ .+ ..++++++.+++|++|++.+..+++.++.++|+|||++|+..+|+.+++|+
T Consensus 83 --~~~~~~~~~v~~~~~~~~~~i--~~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 83 --ERSRVPYTCVKGRDDTVNVQI--RG--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HhhcCCceEEecCCCceEEEE--CC--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 456788888877776655554 34 348999999999999999999999988999999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.||++.+.++.||.|||++|...... .+.+++|+|+||||+|++++++.++.+++++..+...+||.+||+.
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~-------~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~ 229 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD-------QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNC 229 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC-------CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHH
Confidence 999999999999999999999875432 3678999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeeccc----CcceeEEeeHHHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYE----GINFSSTITRARFEQLNMDLFEK 321 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~ 321 (428)
|++++.+++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+.. +.++++.|||++|+++++|++++
T Consensus 230 l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~ 309 (653)
T PRK13411 230 IVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEA 309 (653)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH
Confidence 99999999988887777788899999999999999999998888888876543 24578899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceE
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLV 401 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~ 401 (428)
+...+.++|+.++....+++.|+|+||+|++|+|++.|++.|++..+....||+++||+|||++|+.+++. .+++.
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~ 385 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLL 385 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----cccee
Confidence 99999999999998888899999999999999999999999976778889999999999999999999884 57889
Q ss_pred EeecccceeeeEEcCCcccEEEeCCCC
Q 014219 402 ILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+++|+++|+++.++.+.+|||||++
T Consensus 386 ~~dv~p~slgi~~~~~~~~~ii~r~t~ 412 (653)
T PRK13411 386 LLDVTPLSLGIETLGEVFTKIIERNTT 412 (653)
T ss_pred eeecccceeeEEecCCceEEEEECCCc
Confidence 999999999999999999999999985
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=3.3e-64 Score=504.10 Aligned_cols=406 Identities=45% Similarity=0.706 Sum_probs=370.5
Q ss_pred ceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEe-CCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFT-DTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
..+|||||||+|+++|++.+|.+.++++..|++.+||+|+|. ++.+++|..|..+...+|.+++..+|+++|+...+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 469999999999999999999999999999999999999996 45789999999999999999999999999998765
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
+....+.+||.+..++++...+.+...+. .++++++.+++|+++++.+.++++.++.++|+|||++|+..+|+.+++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCe--EEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 34556778999988888777776655554 4899999999999999999999998899999999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
++.||++.+.+++||.|||++|...... ...++|+|+||||+|++++++.++.+++++..+...+||.+||+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~--------~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~ 266 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKS--------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 266 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCC--------CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHH
Confidence 9999999999999999999999876543 67899999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeeccc----CcceeEEeeHHHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYE----GINFSSTITRARFEQLNMDLFE 320 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~i~ 320 (428)
.|++++..++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+.. +.+++..|||++|+++++++++
T Consensus 267 ~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~ 346 (673)
T PLN03184 267 RIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD 346 (673)
T ss_pred HHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH
Confidence 999999999998888777788999999999999999999998888888775432 2457889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcce
Q 014219 321 KCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDL 400 (428)
Q Consensus 321 ~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~ 400 (428)
++...+.++|+.++....+++.|+|+||+|++|.|++.|++.| +..+....||+++||+|||++|+.+++. .+++
T Consensus 347 r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~ 421 (673)
T PLN03184 347 RCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDI 421 (673)
T ss_pred HHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccce
Confidence 9999999999999988889999999999999999999999999 6777788899999999999999999883 4678
Q ss_pred EEeecccceeeeEEcCCcccEEEeCCCC
Q 014219 401 VILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
.+.+++|+++|++..++.+.+|||+|++
T Consensus 422 ~~~dv~p~slgi~~~~~~~~~ii~r~t~ 449 (673)
T PLN03184 422 VLLDVTPLSLGLETLGGVMTKIIPRNTT 449 (673)
T ss_pred EEEecccccceEEecCCeeEEEEeCCCc
Confidence 9999999999999999999999999985
No 9
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.4e-64 Score=511.81 Aligned_cols=411 Identities=49% Similarity=0.783 Sum_probs=373.5
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhhhh
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSVQS 87 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~ 87 (428)
||||||||+++++|++.++.++++.+..|++.+||+|+|.+++++||..|......+|.+++.++|+++|+..++..+..
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred hcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHHH
Q 014219 88 DIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAATQ 167 (428)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~~ 167 (428)
..+.+|+.+..++++...+.+.+.+....++++++++++|+++++.+...++..+..+++|||++|+..+|+.+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999999999999999998889999999999999999999999998889999999999999999999999999
Q ss_pred cCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHH
Q 014219 168 CGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMV 247 (428)
Q Consensus 168 ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 247 (428)
||++.+.+++||+|||++|...... .++.++|+|+||||+|++++++.++.+++++..++..+||.+||+.|.
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~-------~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 233 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD-------KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALA 233 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS-------SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc-------cccceeccccccceEeeeehhcccccccccccccccccccceecceee
Confidence 9999999999999999998766543 488999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhcc--CCceeEEEeeccc-CcceeEEeeHHHHHHHHHHHHHHHHH
Q 014219 248 DYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSS--TIQTSIEIDYLYE-GINFSSTITRARFEQLNMDLFEKCIE 324 (428)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~--~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~i~~i~~ 324 (428)
+++.+++......+...+++.+.+|+.+||++|+.|+. .....+.+..+.+ |.+.++.|+|++|+++++|+++++..
T Consensus 234 ~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~ 313 (602)
T PF00012_consen 234 EYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIE 313 (602)
T ss_dssp HHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccc
Confidence 99999999998877888899999999999999999998 4555666666666 78889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEee
Q 014219 325 HVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILD 404 (428)
Q Consensus 325 ~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~ 404 (428)
.+.++++.++....+++.|+|+||+|++|+|++.|++.|+ ..+..+.||+++||+|||++|+.+++ .++..++.+.+
T Consensus 314 ~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d 390 (602)
T PF00012_consen 314 PIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIID 390 (602)
T ss_dssp HHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESE
T ss_pred ccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--ccccccccccc
Confidence 9999999998888889999999999999999999999994 77888899999999999999999998 67788999999
Q ss_pred cccceeeeEEcCCcccEEEeCCCC
Q 014219 405 LKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.|++||++..+|.+.+++|+|++
T Consensus 391 ~~~~~~~i~~~~~~~~~ii~~~t~ 414 (602)
T PF00012_consen 391 VTPFSIGIEVSNGKFSKIIPKNTP 414 (602)
T ss_dssp BESSEEEEEETTTEEEEEESTTEB
T ss_pred cccccccccccccccccccccccc
Confidence 999999999999999999999974
No 10
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=7.8e-64 Score=497.15 Aligned_cols=397 Identities=36% Similarity=0.588 Sum_probs=359.4
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-ceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhhh
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-ESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSVQ 86 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~ 86 (428)
+||||||||||++|++.+|.++++.+..|.+.+||+|+|.++ .+++|..|..+...+|.+++..+|+++|+...+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999755 889999999999999999999999999988765432
Q ss_pred hhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHH
Q 014219 87 SDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAAT 166 (428)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~ 166 (428)
.+.+|+.+..++++...+.+. +. .++++++.+++|++|++.+...++.++..+|+|||++|+..+|+.+++|++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~~--~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--QG--TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--CC--EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 566788887777776666553 22 489999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 014219 167 QCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRM 246 (428)
Q Consensus 167 ~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l 246 (428)
.||++.+.++.||.|||++|...... ..+++|+|+||||+|++++++.++.+++++..+...+||.+||+.|
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~--------~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l 225 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKAS--------EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCC--------CCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 99999999999999999999876533 6789999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHH
Q 014219 247 VDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHV 326 (428)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i 326 (428)
.+++..+++ .....+++.+.+|+.+||++|+.|+......+.++. +|.+..+.|||++|+++++|+++++.+.+
T Consensus 226 ~~~l~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i 299 (599)
T TIGR01991 226 AKWILKQLG----ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSIC 299 (599)
T ss_pred HHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 999986643 333457888899999999999999988887777764 67889999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEeecc
Q 014219 327 DTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILDLK 406 (428)
Q Consensus 327 ~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~~~ 406 (428)
.++|+.++....+++.|+|+||+|++|+|++.|++.| +..+....||+++||.|||++|+.+++ .+...++.+.+++
T Consensus 300 ~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~ 376 (599)
T TIGR01991 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLLDVT 376 (599)
T ss_pred HHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEEEee
Confidence 9999999988889999999999999999999999999 666778899999999999999999988 4555789999999
Q ss_pred cceeeeEEcCCcccEEEeCCCC
Q 014219 407 PCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
|+|+|+++.+|.+.+|||||++
T Consensus 377 p~slgi~~~~g~~~~ii~rnt~ 398 (599)
T TIGR01991 377 PLSLGIETMGGLVEKIIPRNTP 398 (599)
T ss_pred eeeeEEEecCCEEEEEEeCCCc
Confidence 9999999999999999999986
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=9.6e-64 Score=500.20 Aligned_cols=403 Identities=48% Similarity=0.776 Sum_probs=365.8
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-ceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-ESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
.+|||||||+|+++|++.+|.+.++.+..|++.+||+|+|.++ .+++|..|..+...+|.++++.+|+++|+... .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999754 89999999999999999999999999998873 35
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
....+.+||. +..+++...+.+ ++ ..++++++++++|+++++.+..+++.++..+++|||++|+..+|+.+++|+
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v--~~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKV--DG--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEE--CC--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5667888988 455666666554 34 348999999999999999999999988999999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.||++.+.+++||.|||++|...... .+..++|+|+||||+|++++++.++.+++++..+...+||.+||+.
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~-------~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~ 226 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK-------KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQR 226 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC-------CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHH
Confidence 999999999999999999999876522 3788999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccC----cceeEEeeHHHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEG----INFSSTITRARFEQLNMDLFEK 321 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~i~~ 321 (428)
|++++..++..+++.++..+++.+.+|+.+||++|+.|+......+.++.+..+ .++.+.|||++|+++++|++++
T Consensus 227 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~ 306 (595)
T TIGR02350 227 IIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVER 306 (595)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHH
Confidence 999999999988887777888999999999999999999988888887765432 4578899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceE
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLV 401 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~ 401 (428)
+.+.+.++|+.++....+++.|+|+||+|++|++++.|++.| +..+....||+++||+|||++|+.+++. .+++.
T Consensus 307 ~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~ 381 (595)
T TIGR02350 307 TKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVL 381 (595)
T ss_pred HHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccce
Confidence 999999999999988888999999999999999999999999 5778889999999999999999999884 57889
Q ss_pred EeecccceeeeEEcCCcccEEEeCCCC
Q 014219 402 ILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+++|+++|++..+|.+.+|||+|++
T Consensus 382 ~~d~~~~~igi~~~~~~~~~ii~~~~~ 408 (595)
T TIGR02350 382 LLDVTPLSLGIETLGGVMTKLIERNTT 408 (595)
T ss_pred eeecccceeEEEecCCceEEEEeCCCc
Confidence 999999999999999999999999985
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=3.5e-63 Score=495.75 Aligned_cols=405 Identities=45% Similarity=0.730 Sum_probs=369.4
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeC-CceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTD-TESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
.+|||||||||+++|++.+|.+.++++..|.+.+||+|+|.+ +++++|..|..+...+|.+++.++|+++|+...+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 699999999999999999999999999999999999999964 5799999999999999999999999999998754 4
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
....+.+|+.+..++++...+.+...+. .++++++.+++|+++++.+...++.++..+++|||++|+..+|+.+++|+
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~~--~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALNK--DFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCCe--EEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4566778999988877777776655554 48999999999999999999999888899999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.||++.+.+++||.|||++|...... +..++|+|+||||+|++++++.++.+++++..+...+||++||+.
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~~--------~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKKN--------NETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccCC--------CCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 999999999999999999999876533 678999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeeccc----CcceeEEeeHHHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYE----GINFSSTITRARFEQLNMDLFEK 321 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~ 321 (428)
|++++.+++..+.+.++..+++.+.+|+.+||++|+.|+......+.++.+.. +.++...|+|++|+++++|++++
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~ 310 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINR 310 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHH
Confidence 99999999998888777788899999999999999999988888888876543 23577889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceE
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLV 401 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~ 401 (428)
+...++++|+.++....+++.|+|+||+|++|++++.+++.| +..+....||+++||+|||++|+.+++. .+++.
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~ 385 (621)
T CHL00094 311 CRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDIL 385 (621)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----cccee
Confidence 999999999999888889999999999999999999999999 6778888999999999999999999883 47789
Q ss_pred EeecccceeeeEEcCCcccEEEeCCCC
Q 014219 402 ILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.+++|+++|++..+|.+.+|||+|++
T Consensus 386 ~~d~~~~~lgi~~~~~~~~~ii~~~t~ 412 (621)
T CHL00094 386 LLDVTPLSLGVETLGGVMTKIIPRNTT 412 (621)
T ss_pred eeeeeceeeeeeccCCEEEEEEeCCCc
Confidence 999999999999999999999999985
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.8e-63 Score=494.04 Aligned_cols=397 Identities=37% Similarity=0.590 Sum_probs=356.2
Q ss_pred CceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
...+|||||||||+++|++.+|.++++++..|.+.+||+|+|.++++++|..|..+...+|.++++.+|+++|+...+.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI- 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh-
Confidence 4579999999999999999999999999999999999999998888999999999999999999999999999987653
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
......+|+.+..++++...+.+. +. .++++++.+++|+++++.+..+++.++..+|+|||++|+..+|+.+++|
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~~~~--~~--~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 171 (616)
T PRK05183 97 -QQRYPHLPYQFVASENGMPLIRTA--QG--LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDA 171 (616)
T ss_pred -hhhhhcCCeEEEecCCCceEEEec--CC--eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 334566888888777777766653 22 4899999999999999999999998899999999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
++.||++.+.+++||+|||++|...... ...++|+|+||||+|++++++.++.+++++..+...+||.+||+
T Consensus 172 a~~AGl~v~~li~EPtAAAlay~~~~~~--------~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~ 243 (616)
T PRK05183 172 ARLAGLNVLRLLNEPTAAAIAYGLDSGQ--------EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDH 243 (616)
T ss_pred HHHcCCCeEEEecchHHHHHHhhcccCC--------CCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHH
Confidence 9999999999999999999999865432 67899999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIE 324 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~ 324 (428)
.|.+++.++++. ....+++.+.+|+.+||++|+.|+......+.++.. ...+||++|+++++|+++++..
T Consensus 244 ~l~~~~~~~~~~----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~ 313 (616)
T PRK05183 244 LLADWILEQAGL----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLL 313 (616)
T ss_pred HHHHHHHHHcCC----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHH
Confidence 999999877643 233578888999999999999999888777776421 2249999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEee
Q 014219 325 HVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILD 404 (428)
Q Consensus 325 ~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~ 404 (428)
.+.++|+.++....+++.|+|+||+|++|++++.|++.| +..+....||+++||+|||++|+.+++ .++..++.+.+
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~--~~~~~~~~l~d 390 (616)
T PRK05183 314 ACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAG--NKPDSDMLLLD 390 (616)
T ss_pred HHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhcc--ccccCceEEEe
Confidence 999999999988889999999999999999999999999 566677889999999999999999988 44557899999
Q ss_pred cccceeeeEEcCCcccEEEeCCCC
Q 014219 405 LKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
++|+|+|+++.+|.+.+|||||++
T Consensus 391 v~p~slgi~~~~g~~~~ii~r~t~ 414 (616)
T PRK05183 391 VIPLSLGLETMGGLVEKIIPRNTT 414 (616)
T ss_pred eccccccceecCCeEEEEEeCCCc
Confidence 999999999999999999999985
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.7e-58 Score=455.50 Aligned_cols=369 Identities=33% Similarity=0.511 Sum_probs=317.1
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh--
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS-- 84 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~-- 84 (428)
.+|||||||||+++|++.++.++++++..|++.+||+|+|.++++++|..| +++++|+++|+...+..
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 589999999999999999999999999999999999999988889999987 68999999998865421
Q ss_pred --hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHH
Q 014219 85 --VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATE 162 (428)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~ 162 (428)
.....+. .... ....+.+.+.+. .++++++.+++|+++++.+..+++.++.++|+|||++|+..+|+.++
T Consensus 90 ~~~~~~~k~----~~~~--~~~~~~~~~~~~--~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDV--NSSELKLNFANK--QLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeec--CCCeeEEEECCE--EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 1111111 1111 122334444443 58999999999999999999999988999999999999999999999
Q ss_pred HHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 014219 163 DAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDF 242 (428)
Q Consensus 163 ~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~i 242 (428)
+|++.||++.+.+++||.|||++|...... ...++|+|+||||+|++++++.++.+++++..+...+||++|
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~--------~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~ 233 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ--------KGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDI 233 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC--------CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHH
Confidence 999999999999999999999999876432 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHH
Q 014219 243 NNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKC 322 (428)
Q Consensus 243 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i 322 (428)
|..|.+++..++... .... ....||++|+.|+....... ..+.+||++|+++++|+++++
T Consensus 234 D~~l~~~~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~ 293 (595)
T PRK01433 234 DVVITQYLCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERT 293 (595)
T ss_pred HHHHHHHHHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHH
Confidence 999999998776321 1221 23459999999987654211 168999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEE
Q 014219 323 IEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVI 402 (428)
Q Consensus 323 ~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~ 402 (428)
...+.++++.++ ..+++.|+|+||+|++|++++.|++.| +.++....||+++||+|||++|+.+++. ..++.+
T Consensus 294 ~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l 366 (595)
T PRK01433 294 INIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLL 366 (595)
T ss_pred HHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEE
Confidence 999999999987 457999999999999999999999999 6778888999999999999999999873 257889
Q ss_pred eecccceeeeEEcCCcccEEEeCCCC
Q 014219 403 LDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
.+++|+|+|+++.+|.+.+|||||++
T Consensus 367 ~Dv~p~slgi~~~~g~~~~ii~rnt~ 392 (595)
T PRK01433 367 IDVVPLSLGMELYGGIVEKIIMRNTP 392 (595)
T ss_pred EEecccceEEEecCCEEEEEEECCCc
Confidence 99999999999999999999999985
No 15
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-59 Score=441.78 Aligned_cols=418 Identities=63% Similarity=0.945 Sum_probs=402.6
Q ss_pred CceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
.+.++|||||||+++++++.++..+++.+..|.+.+|++++|.+.+++.|+.|..+...+|.+++..+|+++|+..+++.
T Consensus 6 ~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred ccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
++..++.||+.+..+..+.+.+.+.+.++...++++++.++.|.+++..++.+++..+..+++|||++|+..+|+...++
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
+..||+..+.++.||.||+++|...... ....+++|+|+||||+|++++.+.++.+.+.+..+...+||.++|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~~------~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~ 239 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKKV------LGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDN 239 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhccccc------cceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhH
Confidence 9999999999999999999999966552 3477889999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIE 324 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~ 324 (428)
.+.+++...+..+.+.++..+.+...+|+.+||.+|+.||.....++.++.+++|.++...++|.+|++++.+++.....
T Consensus 240 ~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~ 319 (620)
T KOG0101|consen 240 KLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLE 319 (620)
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEee
Q 014219 325 HVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILD 404 (428)
Q Consensus 325 ~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~ 404 (428)
.+...|..+..++.+++.|+|+||++++|.++..++..|++..+..+.||++++|+||++.++.+++.++.+..++.+.+
T Consensus 320 ~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid 399 (620)
T KOG0101|consen 320 PVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLID 399 (620)
T ss_pred HHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeee
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred cccceeeeEEcCCcccEEEeCCCC
Q 014219 405 LKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.|.|+|+++++|++.++|+|||.
T Consensus 400 ~~pl~~gve~a~~~~~~~i~~~t~ 423 (620)
T KOG0101|consen 400 VAPLSLGVETAGGVFTVLIPRNTS 423 (620)
T ss_pred cccccccccccCCcceeeeecccc
Confidence 999999999999999999999984
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-57 Score=446.52 Aligned_cols=387 Identities=51% Similarity=0.760 Sum_probs=358.4
Q ss_pred CceEEEEeccCceEEEEEEeCC-eeEEEecCCCCcccceEEEEeCC-ceEecHhhhhhhhhCCCcchhhhhhhcCCCCCC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHD-KVEIIPNDQGNRTTPSYVAFTDT-ESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSD 82 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~-~~~~i~~~~g~~~~pt~i~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~ 82 (428)
.+.+||||||||||++|+++++ .+.++.+..|.+.+||+++|... ++++|..|..+...+|.+++..+|+.+|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 3589999999999999999988 79999999999999999999865 59999999999999999999999999987611
Q ss_pred hhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHH
Q 014219 83 VSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATE 162 (428)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~ 162 (428)
...+.+.+.+ ..++++++.+++|.++++.++..++..+..+|+|||++|+..+|+.++
T Consensus 83 --------------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 --------------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 1112223334 348999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 014219 163 DAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDF 242 (428)
Q Consensus 163 ~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~i 242 (428)
+|++.||+..+.++.||.|||++|...... ...++|+|+||||||++++++..+.+++++..++..+||++|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~~--------~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddf 212 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKGK--------EKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDF 212 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccCC--------CcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhH
Confidence 999999999999999999999999998874 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHH
Q 014219 243 NNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKC 322 (428)
Q Consensus 243 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i 322 (428)
|.+|..++...+..+.+.++..+...+.+|+.+||++|+.|+......+.+++...+.+....++|++|++.+.+++.++
T Consensus 213 D~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~ 292 (579)
T COG0443 213 DNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292 (579)
T ss_pred HHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999888888889999999999999999999999999999887777777888999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEE
Q 014219 323 IEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVI 402 (428)
Q Consensus 323 ~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~ 402 (428)
...+.+++..++.+..+++.|+|+||++++|.+++.+++.| +..+....||++++|.||++.+..+.+.. +++..
T Consensus 293 ~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~~----~d~ll 367 (579)
T COG0443 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEV----PDVLL 367 (579)
T ss_pred HHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCcc----cCceE
Confidence 99999999999999999999999999999999999999999 58888999999999999999999999953 28899
Q ss_pred eecccceeeeEEcCCcccEEEeCCC
Q 014219 403 LDLKPCSHEPKIATGSNPSLLICNH 427 (428)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (428)
.++.|.|.|++..++.+.+||++|+
T Consensus 368 ~Dv~plslgie~~~~~~~~ii~rn~ 392 (579)
T COG0443 368 LDVIPLSLGIETLGGVRTPIIERNT 392 (579)
T ss_pred EeeeeeccccccCcchhhhHHhcCC
Confidence 9999999999999999999999987
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-56 Score=420.46 Aligned_cols=418 Identities=38% Similarity=0.599 Sum_probs=397.9
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSVQ 86 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~ 86 (428)
.++|||||..++.+|++..+.++++.+.-++|.+|++++|..++|++|..|..+...++.+++..+|+++|+...++.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHH
Q 014219 87 SDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAAT 166 (428)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~ 166 (428)
......|+.+...+++...+.+.+.|+.+.+++++++++||.+++..++..++.++..+|++||++|+..+|+.+.+|++
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 014219 167 QCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRM 246 (428)
Q Consensus 167 ~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l 246 (428)
-||+..+.++.|..|+|++|+...++-... ...+.+++++|+|++++.++++.+..+.++++++.+...+||.++|+.|
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~-~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPEN-EEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCc-ccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999888763221 2246889999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHH
Q 014219 247 VDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHV 326 (428)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i 326 (428)
.+++..+|+.+++.+...+++.+.||+..||++|+.++.+......++.++++.+.+-.++|++|++++.|+++++...+
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEeecc
Q 014219 327 DTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILDLK 406 (428)
Q Consensus 327 ~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~~~ 406 (428)
..+|+.++.+..+++.|.++||++++|.+++.|+..| +....++.|.++|+|+|||+..+++++ -++..+.-+.++-
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~ 397 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIV 397 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceeccc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999 7898999999999
Q ss_pred cceeeeEE-----cCCcccEEEeCCCC
Q 014219 407 PCSHEPKI-----ATGSNPSLLICNHL 428 (428)
Q Consensus 407 ~~~~~~~~-----~~~~~~~~~~~~~~ 428 (428)
||+|.+.- +.++...+||+|++
T Consensus 398 pysIs~~w~~~~ed~~~~~evF~~~~~ 424 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDGGSVTEVFPKGHP 424 (727)
T ss_pred ceeEEEEeccccccCCCceeeecCCCC
Confidence 99997662 33665789999985
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-55 Score=398.55 Aligned_cols=407 Identities=48% Similarity=0.761 Sum_probs=385.9
Q ss_pred CceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEE-eCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCCh
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAF-TDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDV 83 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~-~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 83 (428)
...++|||+||+++++++.++..++++.+..|.+.+|++++| .++.+++|-.|.++...+|.+++..-|+++|+..++.
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 356999999999999999999999999999999999999999 4568999999999999999999999999999999999
Q ss_pred hhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHH
Q 014219 84 SVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATED 163 (428)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~ 163 (428)
.++.+.+..|++.+...+|...++. .|.. +++.++.++.|.+++++++.+++......++|||+||...+|+..++
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~--~G~~--~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkd 181 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA--RGKQ--YSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKD 181 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe--CCeE--ecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHh
Confidence 9999999999999998888888877 4544 89999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 014219 164 AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFN 243 (428)
Q Consensus 164 a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id 243 (428)
+.+.+|+..+.+++||+||+++|..+... ...++|+|+||||+|+++..+.++.+++.+..++..+||+++|
T Consensus 182 ag~iagl~vlrvineptaaalaygld~k~--------~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd 253 (640)
T KOG0102|consen 182 AGQIAGLNVLRVINEPTAAALAYGLDKKE--------DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFD 253 (640)
T ss_pred hhhhccceeeccCCccchhHHhhcccccC--------CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHH
Confidence 99999999999999999999999988765 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccC----cceeEEeeHHHHHHHHHHHH
Q 014219 244 NRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEG----INFSSTITRARFEQLNMDLF 319 (428)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~i 319 (428)
..+..++...|....+.++..+...+.|+.+.+|++|..||.....++.++++..+ ..+++.+||.+|++++.+++
T Consensus 254 ~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI 333 (640)
T KOG0102|consen 254 NALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLI 333 (640)
T ss_pred HHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHH
Confidence 99999999999999889999999999999999999999999999999999987666 45789999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcc
Q 014219 320 EKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAED 399 (428)
Q Consensus 320 ~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~ 399 (428)
++..+.....|..++....+++.|+|+||.+++|.+++.+++.| +.......||++++|.||++.+..+.|. +++
T Consensus 334 ~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----Vkd 408 (640)
T KOG0102|consen 334 ARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKD 408 (640)
T ss_pred HhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccc
Confidence 99999999999999999899999999999999999999999999 7777888899999999999999999984 799
Q ss_pred eEEeecccceeeeEEcCCcccEEEeCCCC
Q 014219 400 LVILDLKPCSHEPKIATGSNPSLLICNHL 428 (428)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (428)
+.++++.|.|.|+++.+|-+-.+||+||.
T Consensus 409 vlLLdVtpLsLgietlggvft~Li~rntt 437 (640)
T KOG0102|consen 409 VLLLDVTPLSLGIETLGGVFTKLIPRNTT 437 (640)
T ss_pred eeeeecchHHHHHHhhhhhheecccCCcc
Confidence 99999999999999999999999999984
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-50 Score=379.80 Aligned_cols=406 Identities=31% Similarity=0.507 Sum_probs=369.5
Q ss_pred CceEEEEeccCceEEEEEEeCC-eeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCCh
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHD-KVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDV 83 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~-~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 83 (428)
...+++||+||.++++++..+| +.+++.+..++|+.|++|+|.++.|+||..|.....++|..++..++.++|+...++
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 3578999999999999999888 557888999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhcccCCe-eEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHH
Q 014219 84 SVQSDIKHWPF-KVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATE 162 (428)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~ 162 (428)
.+...-+..|+ .+..++ .+..+.+.+++ ...++++++++|.|.+....++.+.++++..+++|||.+|++.+|+.+.
T Consensus 101 ~v~ly~~~~p~~e~v~d~-~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDP-QRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHHhcCCceeecccC-ccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 66666666664 555555 67777777777 4569999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEe----------CCeEEEEEec
Q 014219 163 DAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIE----------NGVIRVRATD 232 (428)
Q Consensus 163 ~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~----------~~~~~~~~~~ 232 (428)
+|++.||+..+.++++-.|+|+.|+..+... ......++++.|+|+|+|.++++.+. ...++.+++.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~---i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvG 255 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKE---INETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVG 255 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhcccc---CCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeec
Confidence 9999999999999999999999998876541 22357889999999999999999885 2478899999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhhC--CCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHH
Q 014219 233 GNTRLGGVDFNNRMVDYFVEEFKRKNK--IDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRAR 310 (428)
Q Consensus 233 ~~~~~Gg~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 310 (428)
.+..+||..|+.+|..++.+.|.++.+ .+...+++.+.+|.++++++|.-||.+.+....++.+.++.++...|||++
T Consensus 256 fd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~ 335 (902)
T KOG0104|consen 256 FDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREE 335 (902)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHH
Confidence 999999999999999999999988765 356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhc
Q 014219 311 FEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILS 390 (428)
Q Consensus 311 ~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~ 390 (428)
|+++|.++..++...|.++|..++.+..+|+.|+|.||++|+|.+|+.|.+..+...+....|.++|++.||+++|+.++
T Consensus 336 fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 336 FEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999766788888999999999999999999
Q ss_pred CCCCCcCcceEEeecccceeeeEEcCC
Q 014219 391 GVCSDKAEDLVILDLKPCSHEPKIATG 417 (428)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (428)
. +|+++|.+|.+.++|+|-++..+.
T Consensus 416 k--sFKvKpf~V~D~~~yp~~v~f~~~ 440 (902)
T KOG0104|consen 416 K--SFKVKPFNVVDASVYPYLVEFETE 440 (902)
T ss_pred c--cccccceeeeecccccEEEEeccC
Confidence 9 999999999999999888776543
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.6e-49 Score=378.76 Aligned_cols=338 Identities=25% Similarity=0.377 Sum_probs=281.3
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEe---------------------------------------
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFT--------------------------------------- 47 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~--------------------------------------- 47 (428)
+++|||||||||.+|++.++.++++++..|.+.+||+++|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 36999999999999999999999999999999999999994
Q ss_pred --CCceEecHhhhhhhhhCCCcc--hhhhhhhcCCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHH
Q 014219 48 --DTESFVGDSAKNQVSTNPTNT--VFDAKRLIGRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEIS 123 (428)
Q Consensus 48 --~~~~~~G~~a~~~~~~~~~~~--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (428)
++..++|..|.+....+|+++ +.++|+++|...-.. + ....+++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~----------------------------~--~~~~~e~l~ 130 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP----------------------------Q--QVALFEDLV 130 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc----------------------------c--ceeCHHHHH
Confidence 445679999999999999988 679999997652110 0 113488999
Q ss_pred HHHHHHHHHHHHHHcCCccCeEEEEeCCCCC-----HHHHH---HHHHHHHHcCCceEeeechhHHHHHHhhccccccCC
Q 014219 124 SMVLKKKREIAEAFVGTAVTNAVITVPAYFS-----DSQRQ---ATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGG 195 (428)
Q Consensus 124 ~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~-----~~~~~---~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~ 195 (428)
+.+|++|++.++..++.++..+|+|+|++|+ +.+|+ .+++|++.||++.+.+++||.|||++|.....
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~---- 206 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT---- 206 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC----
Confidence 9999999999999999889999999999998 55654 47999999999999999999999999975443
Q ss_pred ccccCceEEEEEEecCcceEEEEEEEeCC-------eEEEEEecCCCCcchHHHHHHHH-HHHHHHHHhh----hCCCC-
Q 014219 196 IAASGVKNVLIFDLGGGTFDVSLLAIENG-------VIRVRATDGNTRLGGVDFNNRMV-DYFVEEFKRK----NKIDI- 262 (428)
Q Consensus 196 ~~~~~~~~~lvvDiG~~t~d~~~~~~~~~-------~~~~~~~~~~~~~Gg~~id~~l~-~~l~~~~~~~----~~~~~- 262 (428)
.+..++|+|+||||+|++++++.+. ..++++..+ ..+||.+||+.|. +++...++.. .+.+.
T Consensus 207 ----~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p 281 (450)
T PRK11678 207 ----EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALP 281 (450)
T ss_pred ----CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCc
Confidence 3788999999999999999998654 356777776 7899999999997 5676666421 01000
Q ss_pred ----------------------------------CCCHHHH------------HHHHHHHHHHHHHhccCCceeEEEeec
Q 014219 263 ----------------------------------SGNARAL------------HRLRIACESAKRTLSSTIQTSIEIDYL 296 (428)
Q Consensus 263 ----------------------------------~~~~~~~------------~~l~~~~e~~K~~l~~~~~~~~~~~~~ 296 (428)
..+++.. .+|+.+||++|+.||......+.++..
T Consensus 282 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~ 361 (450)
T PRK11678 282 SLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFI 361 (450)
T ss_pred chhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEeccc
Confidence 0122222 367899999999999998888888755
Q ss_pred ccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhh
Q 014219 297 YEGINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADE 376 (428)
Q Consensus 297 ~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ 376 (428)
.. +....|+|++|+++++|+++++.+.+.++++.++.. ++.|+|+||+|++|++++.+++.||+.++. ..+|..
T Consensus 362 ~~--~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~ 435 (450)
T PRK11678 362 SD--GLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFG 435 (450)
T ss_pred CC--CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcc
Confidence 43 477899999999999999999999999999998865 579999999999999999999999666655 459999
Q ss_pred HHHhHHHHHHHHh
Q 014219 377 AVATGAAIQAAIL 389 (428)
Q Consensus 377 ava~Ga~~~~~~~ 389 (428)
+||.|++++|.+.
T Consensus 436 sVa~Gla~~a~~~ 448 (450)
T PRK11678 436 SVTAGLARWAQVV 448 (450)
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999763
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=6.2e-38 Score=293.04 Aligned_cols=307 Identities=25% Similarity=0.355 Sum_probs=234.9
Q ss_pred EEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC--c-eEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhh
Q 014219 9 IGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT--E-SFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSV 85 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~--~-~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 85 (428)
+||||||++|+++.. +...++ ..||++++... . ..+|++|.+.....|.+....
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~-------~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVL-------NEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-------------- 62 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEE-------ccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--------------
Confidence 899999999999876 333344 25999999853 2 368999987766655554311
Q ss_pred hhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHH
Q 014219 86 QSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAA 165 (428)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~ 165 (428)
+++++ ++ +...+....+|+++.+.+..........+++|+|.+|+..+|+.+.+++
T Consensus 63 -~pi~~---G~--------------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 -RPLRD---GV--------------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -ccCCC---Ce--------------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 11110 11 2333455666777765443221223347999999999999999999999
Q ss_pred HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
+.+|++.+.+++||.|||++++..... +..++|+|+|+||||++++..+... ..+...+||++||+.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~--------~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~ 185 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQ--------PSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEA 185 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccC--------CCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHH
Confidence 999999999999999999999875533 5668999999999999999976433 345689999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC----ceeEEEee--cccCcceeEEeeHHHHHHHHHHHH
Q 014219 246 MVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTI----QTSIEIDY--LYEGINFSSTITRARFEQLNMDLF 319 (428)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~----~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i 319 (428)
|.+++..++..... ...+|++|+.++... ...+.+.. ...+.+..+.+++++|++++.+.+
T Consensus 186 i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~ 252 (336)
T PRK13928 186 IIRYIRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPV 252 (336)
T ss_pred HHHHHHHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHH
Confidence 99999876643222 367999999986432 12233221 233455678999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCC-eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 320 EKCIEHVDTCLAKAKID--RTAVD-DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 320 ~~i~~~i~~~l~~~~~~--~~~i~-~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
+++.+.+.+.++.++.. ...++ .|+|+||+|++|++++++++.| +.++....||.++||+||++.+..+
T Consensus 253 ~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 253 SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999998643 24466 7999999999999999999999 7888899999999999999998774
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.8e-37 Score=288.85 Aligned_cols=306 Identities=25% Similarity=0.377 Sum_probs=238.7
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCc---eEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTE---SFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~---~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
.+||||||+++++ +.++... +.+ .||+|+++.+. ..+|++|..+..+.|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~---------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R---------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----------
Confidence 5999999999986 3344443 333 49999997443 479999998888888776322 1
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCcc--CeEEEEeCCCCCHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAV--TNAVITVPAYFSDSQRQATE 162 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~--~~~vitvP~~~~~~~~~~l~ 162 (428)
++++ +. +...++...+|+++++.+...++..+ ..+++|+|++++..+|+.+.
T Consensus 65 ---pi~~---G~--------------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 ---PMKD---GV--------------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred ---cCCC---Cc--------------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 1110 11 22336778999999988776665443 37999999999999999999
Q ss_pred HHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 014219 163 DAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDF 242 (428)
Q Consensus 163 ~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~i 242 (428)
++++.+|++.+.++.||.|||+++...... ...++|+|+|+||||++++..+... ..+...+||+++
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~--------~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~i 185 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVDE--------PVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQL 185 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcCC--------CceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHH
Confidence 999999999999999999999998765433 6678999999999999999865433 344578999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC----ceeEEEe--ecccCcceeEEeeHHHHHHHHH
Q 014219 243 NNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTI----QTSIEID--YLYEGINFSSTITRARFEQLNM 316 (428)
Q Consensus 243 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~----~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 316 (428)
|+.|.+++...++.... ...||++|+.++... ...+.+. ....+....+.+++++|.+++.
T Consensus 186 d~~l~~~l~~~~~~~~~-------------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~ 252 (335)
T PRK13929 186 DEDIVSFVRKKYNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMR 252 (335)
T ss_pred HHHHHHHHHHHhCcCcC-------------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHH
Confidence 99999999765532111 368999999997532 1122222 1234455788999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC--CCCC-eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHH
Q 014219 317 DLFEKCIEHVDTCLAKAKIDR--TAVD-DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 317 ~~i~~i~~~i~~~l~~~~~~~--~~i~-~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
+.+.+|.+.+.+.|+++.... ..++ .|+|+||+|++|++.+++++.| +.++....||.++||.||+..-.
T Consensus 253 ~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 253 ESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSLE 325 (335)
T ss_pred HHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHHH
Confidence 999999999999999986543 4456 6999999999999999999999 88988889999999999998853
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=6.8e-36 Score=279.89 Aligned_cols=307 Identities=25% Similarity=0.368 Sum_probs=227.4
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-c--eEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-E--SFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-~--~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
.||||+||++++++...++ .++ .+||++++.+. + .++|++|.......|.++...
T Consensus 7 ~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------- 64 (334)
T ss_pred eeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------------
Confidence 5999999999999654333 233 37999999644 2 479999987766655554211
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
.++++ +.+ ...+....+++++........... ..+++++|.+|+..+|+.++.+
T Consensus 65 --~pi~~---G~i--------------------~d~~~~~~ll~~~~~~~~~~~~~~-~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 65 --RPMKD---GVI--------------------ADFDVTEKMLKYFIKKVHKNFRPS-PRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred --ecCCC---Cee--------------------cCHHHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCCHHHHHHHHHH
Confidence 11111 111 111223444444443332222112 3799999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
++.+|++.+.++.||.|||+++...... ...++|+|+|+||||+++++..... ......+||++||+
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~~--------~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~ 185 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVTE--------PTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDE 185 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCcccC--------CCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHH
Confidence 9999999999999999999998765432 5568999999999999999875533 34457899999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc----eeEEEe--ecccCcceeEEeeHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ----TSIEID--YLYEGINFSSTITRARFEQLNMDL 318 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~----~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 318 (428)
.|.+++.+++..... ...+|++|+.++.... ..+.+. ....+.+..+.+++++|++++.+.
T Consensus 186 ~l~~~l~~~~~~~~~-------------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~ 252 (334)
T PRK13927 186 AIINYVRRNYNLLIG-------------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEP 252 (334)
T ss_pred HHHHHHHHHhCcCcC-------------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHH
Confidence 999999766532211 3578999999875432 223332 123455567899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC-CC-CC-eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 319 FEKCIEHVDTCLAKAKIDR-TA-VD-DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 319 i~~i~~~i~~~l~~~~~~~-~~-i~-~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
+++|.+.+.+.++++.... .+ ++ .|+|+||+|++|++++++++.| +.++....+|.+++|+||++++...
T Consensus 253 ~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 253 LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 9999999999999986432 22 33 5999999999999999999999 7889999999999999999998663
No 24
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=2.4e-37 Score=280.48 Aligned_cols=306 Identities=28% Similarity=0.382 Sum_probs=223.7
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-c--eEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-E--SFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-~--~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
-+||||||++|.++....| .++ ..||+|+++.. + ..+|++|.....+.|.+ ..
T Consensus 3 ~igIDLGT~~t~i~~~~~G--iv~-------~epSvVA~~~~~~~i~avG~~A~~m~gktp~~---------------i~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG--IVL-------NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDN---------------IE 58 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE--EEE-------EEES-EEEETTT--EEEESHHHHTTTTS-GTT---------------EE
T ss_pred ceEEecCcccEEEEECCCC--EEE-------ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCc---------------cE
Confidence 5899999999999544333 222 24999999754 2 34899998555554444 33
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
+.+++++ +++ .--++...+|+++++.+.........++++++|+..|.-+|+.+.++
T Consensus 59 ~~~Pl~~---GvI--------------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 VVRPLKD---GVI--------------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp EE-SEET---TEE--------------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred EEccccC---Ccc--------------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3333333 222 33456777888888777664222345899999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
+..+|...+++++||.|||+++...... ....||||||+||||++++..+... .+.+..+||+++|+
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~--------~~g~miVDIG~GtTdiavislggiv-----~s~si~~gG~~~De 182 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE--------PRGSMIVDIGGGTTDIAVISLGGIV-----ASRSIRIGGDDIDE 182 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS--------SS-EEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC--------CCceEEEEECCCeEEEEEEECCCEE-----EEEEEEecCcchhH
Confidence 9999999999999999999999988765 7778999999999999999754432 34447999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc----eeEEEe--ecccCcceeEEeeHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ----TSIEID--YLYEGINFSSTITRARFEQLNMDL 318 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~----~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 318 (428)
++.++++++++-..+ ...+|++|++++.... ..+.+. ....|...++.++.+++.+++.+.
T Consensus 183 aI~~~ir~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~ 249 (326)
T PF06723_consen 183 AIIRYIREKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPP 249 (326)
T ss_dssp HHHHHHHHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHH
Confidence 999999999865555 6899999999975432 234443 346778889999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC-CCC--CeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHH
Q 014219 319 FEKCIEHVDTCLAKAKIDR-TAV--DDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 319 i~~i~~~i~~~l~~~~~~~-~~i--~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
+.+|.+.++++|++..+.. .|+ +.|+|+||+|++++|.++|++.+ +.+|...++|..++|.||.....
T Consensus 250 ~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 250 VDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999999999999865443 233 67999999999999999999999 89999999999999999987654
No 25
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.7e-35 Score=276.46 Aligned_cols=306 Identities=25% Similarity=0.358 Sum_probs=224.9
Q ss_pred EEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-----c--eEecHhhhhhhhhCCCcchhhhhhhcCCCCC
Q 014219 9 IGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-----E--SFVGDSAKNQVSTNPTNTVFDAKRLIGRRFS 81 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-----~--~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~ 81 (428)
+||||||++|+++....+ .++ ..||+++|.++ + ..+|++|.....+.|.++.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~------------ 63 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV------------ 63 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE------------
Confidence 999999999999875433 233 37999999743 3 5699999866555554442
Q ss_pred ChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHH
Q 014219 82 DVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQAT 161 (428)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l 161 (428)
+.+++++ +.+ ...+....++++++.............+++|+|++|+..+|+.+
T Consensus 64 ---~~~pi~~---G~i--------------------~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 64 ---AIRPMKD---GVI--------------------ADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ---EEecCCC---CEE--------------------EcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 1111111 111 11122333444444333221111123899999999999999999
Q ss_pred HHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHH
Q 014219 162 EDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVD 241 (428)
Q Consensus 162 ~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~ 241 (428)
+++++.+|++.+.++.||.||++++...... ...++|+|+|+||||+++++..... ......+||++
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~--------~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~d 184 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVEE--------PTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDE 184 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCcccC--------CceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHH
Confidence 9999999999999999999999998765432 5678999999999999999876433 34457899999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc-----eeEEEee--cccCcceeEEeeHHHHHHH
Q 014219 242 FNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ-----TSIEIDY--LYEGINFSSTITRARFEQL 314 (428)
Q Consensus 242 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~-----~~~~~~~--~~~~~~~~~~i~~~~~~~~ 314 (428)
||+.|.+++.+++..... ...+|++|+.++.... ..+.+.. ...+......++++++.++
T Consensus 185 id~~l~~~l~~~~~~~~~-------------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~ 251 (333)
T TIGR00904 185 FDEAIINYIRRTYNLLIG-------------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREA 251 (333)
T ss_pred HHHHHHHHHHHHhcccCC-------------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHH
Confidence 999999999866532111 3689999999875322 1222211 1123345678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC-CCC-C-eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHH
Q 014219 315 NMDLFEKCIEHVDTCLAKAKIDR-TAV-D-DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~~~-~~i-~-~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
+.+.++++.+.+.+.++.+.... .++ + .|+|+||+|++|++++++++.| +.++....||.+++|.||+++...
T Consensus 252 i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 252 LQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999999999976543 233 3 7999999999999999999999 889999999999999999999754
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.9e-35 Score=275.18 Aligned_cols=308 Identities=26% Similarity=0.351 Sum_probs=230.0
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeC-C--ceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChh
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTD-T--ESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVS 84 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~-~--~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 84 (428)
.+||||||++|+++++.++ .++ .+||+|++.+ . ..++|++|.......|.+..
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--------------- 65 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--------------- 65 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE---------------
Confidence 3999999999999987433 232 2599999964 2 35799999866655444321
Q ss_pred hhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHH
Q 014219 85 VQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDA 164 (428)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a 164 (428)
+..++.+ |. +...+....+++++.+............+++|+|.+|+..+|+.+.++
T Consensus 66 ~~~pi~~--------------------G~---i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 66 AIRPLKD--------------------GV---IADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred EeecCCC--------------------Ce---EcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0111111 11 112234666677766554443333356899999999999999999999
Q ss_pred HHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 014219 165 ATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNN 244 (428)
Q Consensus 165 ~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~ 244 (428)
++.+|++.+.++.||.||++++...... ....+|||+|+||||++++..+... ......+||.+||+
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~--------~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~ 189 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE--------PVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDE 189 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC--------CCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHH
Confidence 9999999999999999999998765432 4457999999999999999865433 34558999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc----eeEEEee--cccCcceeEEeeHHHHHHHHHHH
Q 014219 245 RMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ----TSIEIDY--LYEGINFSSTITRARFEQLNMDL 318 (428)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~----~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~ 318 (428)
.|.+++.++++.... ...+|++|+.++.... ..+.+.. ...+.+..+.+++++|++++.+.
T Consensus 190 ~l~~~l~~~~~~~~~-------------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~ 256 (335)
T PRK13930 190 AIVQYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEP 256 (335)
T ss_pred HHHHHHHHHhCCCCC-------------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHH
Confidence 999999876531111 3678999999875432 1222221 12344457889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCCC-eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 319 FEKCIEHVDTCLAKAKIDR--TAVD-DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 319 i~~i~~~i~~~l~~~~~~~--~~i~-~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
++++.+.+.+.++++.... ..++ .|+|+||+|++|+++++|++.| +.++....+|..++|+||++.+...
T Consensus 257 ~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 257 LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999999999999875332 2234 4999999999999999999999 7888899999999999999998654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-33 Score=245.22 Aligned_cols=311 Identities=26% Similarity=0.363 Sum_probs=245.2
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeC--C-c--eEecHhhhhhhhhCCCcchhhhhhhcCCCCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTD--T-E--SFVGDSAKNQVSTNPTNTVFDAKRLIGRRFS 81 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~--~-~--~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~ 81 (428)
.-+|||+||.||.+..-..+ ++.+ -||++++.. + . ..+|.+|+ .++|+.+.
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~------ePSVVAi~~~~~~~~v~aVG~eAK---------------~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGKTKVVLAVGEEAK---------------QMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEcCce---EEec------CceEEEEeecCCCceEEEehHHHH---------------HHhccCCC
Confidence 37999999999999765222 3433 499999966 2 2 24899997 55555555
Q ss_pred ChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcC-CccCeEEEEeCCCCCHHHHHH
Q 014219 82 DVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVG-TAVTNAVITVPAYFSDSQRQA 160 (428)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~-~~~~~~vitvP~~~~~~~~~~ 160 (428)
+....+++++ +++ ..-++....++|+++....... ....++++++|+..+.-+|++
T Consensus 63 ni~aiRPmkd---GVI--------------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIVAIRPMKD---GVI--------------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred CceEEeecCC---cEe--------------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 5444444444 333 2334555566666665542222 334579999999999999999
Q ss_pred HHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchH
Q 014219 161 TEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGV 240 (428)
Q Consensus 161 l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~ 240 (428)
++++++.+|...+.+++||.|||+.+...... +...|||||||||||++++.+++.. +..+..+||+
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~e--------p~G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD 186 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIME--------PTGSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGD 186 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccC--------CCCCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecc
Confidence 99999999999999999999999999877665 5567999999999999999988776 6667899999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc------eeEEE--eecccCcceeEEeeHHHHH
Q 014219 241 DFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ------TSIEI--DYLYEGINFSSTITRARFE 312 (428)
Q Consensus 241 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~------~~~~~--~~~~~~~~~~~~i~~~~~~ 312 (428)
.+|+.+.++++++|+-..+ ...+|++|........ .++.+ ..+..|....++++.+++.
T Consensus 187 ~~De~Ii~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~ 253 (342)
T COG1077 187 KMDEAIIVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIA 253 (342)
T ss_pred hhhHHHHHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHH
Confidence 9999999999998876666 4779999998764432 22333 3355677789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-CCC--CeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDR-TAV--DDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~-~~i--~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
+++++.++.|.+.++..|++..... .++ ..++|+||+|.+.++.+.+++.. +.++...++|..+||.|+.+....+
T Consensus 254 eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 254 EALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhh
Confidence 9999999999999999999976554 333 45999999999999999999999 8999999999999999999988776
Q ss_pred cC
Q 014219 390 SG 391 (428)
Q Consensus 390 ~~ 391 (428)
..
T Consensus 333 ~~ 334 (342)
T COG1077 333 DL 334 (342)
T ss_pred Hh
Confidence 54
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=5.2e-30 Score=226.02 Aligned_cols=203 Identities=20% Similarity=0.312 Sum_probs=172.5
Q ss_pred EeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCc
Q 014219 117 VAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGI 196 (428)
Q Consensus 117 ~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~ 196 (428)
+..-+....+|+++++.++..++.+...+++|||++|+..+|+.+.++++.+|+..+.++.||.|+++++...
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------- 108 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------- 108 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------
Confidence 3455678899999999998888878889999999999999999999999999999999999999999987532
Q ss_pred cccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 014219 197 AASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIAC 276 (428)
Q Consensus 197 ~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (428)
..+|+|+|++|||+++++.+... ......+||+++|+.|.+.+. .+ ..++
T Consensus 109 ------~~~vvDiGggtt~i~i~~~G~i~-----~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~A 158 (239)
T TIGR02529 109 ------NGAVVDVGGGTTGISILKKGKVI-----YSADEPTGGTHMSLVLAGAYG--------IS-----------FEEA 158 (239)
T ss_pred ------CcEEEEeCCCcEEEEEEECCeEE-----EEEeeecchHHHHHHHHHHhC--------CC-----------HHHH
Confidence 14999999999999998743322 344578999999999876552 11 4889
Q ss_pred HHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHH
Q 014219 277 ESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQ 356 (428)
Q Consensus 277 e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~ 356 (428)
|++|+.+.. .+++.+++.+.++++.+.+++.+++. .++.|+|+||+|++|+++
T Consensus 159 E~~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~ 211 (239)
T TIGR02529 159 EEYKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFA 211 (239)
T ss_pred HHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHH
Confidence 999987541 35677899999999999999999864 356999999999999999
Q ss_pred HHHHhhcCCCCcCCCCChhhHHHhHHHH
Q 014219 357 QLLQDFFLGKNLCRHINADEAVATGAAI 384 (428)
Q Consensus 357 ~~l~~~~~~~~v~~~~~p~~ava~Ga~~ 384 (428)
+.+++.| +.++..+.||++++|.||++
T Consensus 212 e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 212 DVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHh-CCCcccCCCCCeehhheeec
Confidence 9999999 88999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.97 E-value=7.8e-28 Score=216.07 Aligned_cols=202 Identities=22% Similarity=0.337 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCcccc
Q 014219 120 EEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAAS 199 (428)
Q Consensus 120 ~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~ 199 (428)
.+.....|+++++.++...+.++..+++++|..++..+++.+.++++.+|++...++.||.|++.++...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4556777888888888887777889999999999999999999999999999999999999999876431
Q ss_pred CceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESA 279 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 279 (428)
..+++|||||||+++++. ++.+. .....++||++||+.+.+.+.- + ..++|++
T Consensus 136 ---~~~vvDIGggtt~i~v~~--~g~~~---~~~~~~~GG~~it~~Ia~~l~i--------~-----------~~eAE~l 188 (267)
T PRK15080 136 ---NGAVVDIGGGTTGISILK--DGKVV---YSADEPTGGTHMSLVLAGAYGI--------S-----------FEEAEQY 188 (267)
T ss_pred ---CcEEEEeCCCcEEEEEEE--CCeEE---EEecccCchHHHHHHHHHHhCC--------C-----------HHHHHHH
Confidence 148999999999999986 44332 2345899999999999877621 1 4788999
Q ss_pred HHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHH
Q 014219 280 KRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLL 359 (428)
Q Consensus 280 K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l 359 (428)
|..++ +++++.++++|.++++.+.+++.++.. .++.|+|+||+|++|++++.+
T Consensus 189 K~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l 241 (267)
T PRK15080 189 KRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVF 241 (267)
T ss_pred HhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHH
Confidence 88742 246788999999999999999999863 467999999999999999999
Q ss_pred HhhcCCCCcCCCCChhhHHHhHHHHHH
Q 014219 360 QDFFLGKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 360 ~~~~~~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
++.| +.++..+.+|.+++|.||++++
T Consensus 242 ~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 242 EKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 9999 8899999999999999999874
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.93 E-value=1.8e-24 Score=207.32 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=151.2
Q ss_pred HHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCc
Q 014219 158 RQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRL 237 (428)
Q Consensus 158 ~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~ 237 (428)
.+.+.+|++.||++...++.||.|++.+++..... ...++++|+||||||+++++ ++.+. +....++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~--------~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~ 234 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDER--------ELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPY 234 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhh--------hcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeec
Confidence 45667899999999999999999999998765433 66799999999999999998 44433 4455899
Q ss_pred chHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccC------CceeEEEeecccCcceeEEeeHHHH
Q 014219 238 GGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSST------IQTSIEIDYLYEGINFSSTITRARF 311 (428)
Q Consensus 238 Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~------~~~~~~~~~~~~~~~~~~~i~~~~~ 311 (428)
||+++++.|...+.- . ..+||++|..+... ....+.++...++ ....++++++
T Consensus 235 GG~~it~dIa~~l~i------~-------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l 293 (420)
T PRK09472 235 AGNVVTSDIAYAFGT------P-------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTL 293 (420)
T ss_pred hHHHHHHHHHHHhCc------C-------------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHH
Confidence 999999999766521 1 48899999876532 1233444432222 2358899999
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCC------------CC
Q 014219 312 EQLNMDLFEKCIEHVDTCL-------AKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCR------------HI 372 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l-------~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~------------~~ 372 (428)
.+++.+.+++|.+.+.+.+ ...+.....++.|+|+||+|++|++++.+++.| +.++.. ..
T Consensus 294 ~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~ 372 (420)
T PRK09472 294 AEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQ 372 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcC
Confidence 9999999888888887655 444544456789999999999999999999999 443322 35
Q ss_pred ChhhHHHhHHHHHHHH
Q 014219 373 NADEAVATGAAIQAAI 388 (428)
Q Consensus 373 ~p~~ava~Ga~~~~~~ 388 (428)
+|.+++|.|+++|+..
T Consensus 373 ~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 373 EPYYSTAVGLLHYGKE 388 (420)
T ss_pred CcHHHHHHHHHHHhhh
Confidence 8999999999999874
No 31
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.93 E-value=2e-24 Score=204.79 Aligned_cols=194 Identities=21% Similarity=0.313 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCC
Q 014219 156 SQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNT 235 (428)
Q Consensus 156 ~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~ 235 (428)
...+.+.++++.||++...++.||.|++++++..... ...++|+|+|+||||++++. ++... .....
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~--------~~~~~vvDiG~gtt~i~i~~--~g~~~---~~~~i 224 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEK--------ELGVCLIDIGGGTTDIAVYT--GGSIR---YTKVI 224 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchh--------cCCEEEEEeCCCcEEEEEEE--CCEEE---EEeee
Confidence 3467788899999999999999999999988644322 56789999999999999997 34332 23447
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC------ceeEEEeecccCcceeEEeeHH
Q 014219 236 RLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTI------QTSIEIDYLYEGINFSSTITRA 309 (428)
Q Consensus 236 ~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~------~~~~~~~~~~~~~~~~~~i~~~ 309 (428)
++||+++|+.+.+.+.. ...+||++|+.++... ...+.++.. +......++++
T Consensus 225 ~~GG~~it~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~ 283 (371)
T TIGR01174 225 PIGGNHITKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRK 283 (371)
T ss_pred cchHHHHHHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHH
Confidence 99999999998765421 1588999999997532 334555433 23466899999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCCe-EEEEcCCcCcHHHHHHHHhhcCCCCcCC------------CCChh
Q 014219 310 RFEQLNMDLFEKCIEHVD-TCLAKAKIDRTAVDD-VVIVGGSSRIPKLQQLLQDFFLGKNLCR------------HINAD 375 (428)
Q Consensus 310 ~~~~~~~~~i~~i~~~i~-~~l~~~~~~~~~i~~-Vvl~GG~s~~~~l~~~l~~~~~~~~v~~------------~~~p~ 375 (428)
+|++++++.+++|.+.+. +.+++.+.. .+++. |+|+||+|++|++++.+++.|+ .++.. ..+|.
T Consensus 284 ~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~ 361 (371)
T TIGR01174 284 ELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPE 361 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcH
Confidence 999999999999999997 999987765 45666 9999999999999999999994 33211 34899
Q ss_pred hHHHhHHHHH
Q 014219 376 EAVATGAAIQ 385 (428)
Q Consensus 376 ~ava~Ga~~~ 385 (428)
+++|.|+++|
T Consensus 362 ~~~a~Gl~~~ 371 (371)
T TIGR01174 362 YSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.1e-22 Score=189.33 Aligned_cols=197 Identities=23% Similarity=0.366 Sum_probs=164.8
Q ss_pred HHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCc
Q 014219 158 RQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRL 237 (428)
Q Consensus 158 ~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~ 237 (428)
.+.|.+|++++|+....++.+|.|++.+.+..... ...+++||+|+||||+++++ ++.+. +.+..++
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk--------elGv~lIDiG~GTTdIai~~--~G~l~---~~~~ipv 233 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK--------ELGVALIDIGGGTTDIAIYK--NGALR---YTGVIPV 233 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH--------hcCeEEEEeCCCcEEEEEEE--CCEEE---EEeeEee
Confidence 57889999999999999999999999999988876 77799999999999999999 55544 5556999
Q ss_pred chHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc------eeEEEeecccCcceeEEeeHHHH
Q 014219 238 GGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ------TSIEIDYLYEGINFSSTITRARF 311 (428)
Q Consensus 238 Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~~~ 311 (428)
||++++..++..+... ...||++|..+..... ..+.++... .+....++++++
T Consensus 234 gG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg--~~~~~~~t~~~l 292 (418)
T COG0849 234 GGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVG--SDIPRQVTRSEL 292 (418)
T ss_pred CccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCC--CcccchhhHHHH
Confidence 9999999998887432 4899999999864432 234444333 333678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCc--------CC----CCChhhHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNL--------CR----HINADEAVA 379 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v--------~~----~~~p~~ava 379 (428)
.+++++.+.++..++++.|++.+.+..-...|+|+||+++++++.+..++.|. .++ .- ..+|.++.|
T Consensus 293 s~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~a 371 (418)
T COG0849 293 SEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTA 371 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhh
Confidence 99999999999999999999998875667899999999999999999999993 322 11 457999999
Q ss_pred hHHHHHHHHh
Q 014219 380 TGAAIQAAIL 389 (428)
Q Consensus 380 ~Ga~~~~~~~ 389 (428)
.|+.+++...
T Consensus 372 vGl~~~~~~~ 381 (418)
T COG0849 372 VGLLLYGALM 381 (418)
T ss_pred HHHHHHHhhc
Confidence 9999999874
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.86 E-value=1.2e-20 Score=179.50 Aligned_cols=303 Identities=20% Similarity=0.217 Sum_probs=196.5
Q ss_pred EEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeC----------CceEecHhhhhhhhhCCCcchhhhhhhcC
Q 014219 8 AIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTD----------TESFVGDSAKNQVSTNPTNTVFDAKRLIG 77 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~----------~~~~~G~~a~~~~~~~~~~~~~~~k~~l~ 77 (428)
.|.||+||.++++++..++.+..+ +||+++... ...++|++|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 378999999999999976644433 677776642 345678776532211
Q ss_pred CCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHH
Q 014219 78 RRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQ 157 (428)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~ 157 (428)
+..+..++++ |. +...+.+..+++++...... .......+++++|..++...
T Consensus 59 ----~~~~~~P~~~--------------------G~---i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 59 ----GLELIYPIEH--------------------GI---VVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred ----ceEEcccccC--------------------CE---EeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHH
Confidence 0111111111 11 23344556677776654221 12234589999999999888
Q ss_pred HHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCC
Q 014219 158 RQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTR 236 (428)
Q Consensus 158 ~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~ 236 (428)
|+.+.+ +++..+++.+.++++|.++++++.. .+.+|||+|+++|+++.+. ++.... .......
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~i~pv~--~G~~~~-~~~~~~~ 174 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASGR-------------TTGLVVDSGDGVTHVVPVY--DGYVLP-HAIKRLD 174 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------------CeEEEEECCCCeeEEEEEE--CCEEch-hhheecc
Confidence 888877 6777999999999999999998753 4579999999999999887 443221 1223479
Q ss_pred cchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCce-------------eEEEee-cccCcce
Q 014219 237 LGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQT-------------SIEIDY-LYEGINF 302 (428)
Q Consensus 237 ~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~-------------~~~~~~-~~~~~~~ 302 (428)
+||+++|+.|.+++..+.. . +. ...-...++.+|+.+...... ...... +.++ .
T Consensus 175 ~GG~~l~~~l~~~l~~~~~---~--~~-----~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~ 242 (371)
T cd00012 175 LAGRDLTRYLKELLRERGY---E--LN-----SSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--R 242 (371)
T ss_pred ccHHHHHHHHHHHHHhcCC---C--cc-----chhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--e
Confidence 9999999999999865421 0 00 001135567777775422110 000011 1122 2
Q ss_pred eEEeeHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC----C---
Q 014219 303 SSTITRARFE---QLNMDL-----FEKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL----G--- 365 (428)
Q Consensus 303 ~~~i~~~~~~---~~~~~~-----i~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~----~--- 365 (428)
.+.++.+.|. .+|.|. ...|.+.+.+.++.+..+. .-.+.|+|+||+|++|++.++|++.+. .
T Consensus 243 ~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~ 322 (371)
T cd00012 243 TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKD 322 (371)
T ss_pred EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccc
Confidence 4455544332 234442 3477888888888865443 235789999999999999999999884 1
Q ss_pred --CCcCCCCChhhHHHhHHHHHHHH
Q 014219 366 --KNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 366 --~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
..+....+|..++..|+++++..
T Consensus 323 ~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 323 TKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred eEEEEccCCCccccEEeCchhhcCc
Confidence 23456789999999999999965
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.84 E-value=2.5e-20 Score=177.51 Aligned_cols=303 Identities=20% Similarity=0.237 Sum_probs=191.4
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC---------ceEecHhhhhhhhhCCCcchhhhhhhcC
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT---------ESFVGDSAKNQVSTNPTNTVFDAKRLIG 77 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~---------~~~~G~~a~~~~~~~~~~~~~~~k~~l~ 77 (428)
..|+||+||.++++++..+..|..+ +||+++...+ ..++|++|......
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 59 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGG-------------- 59 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcCCC--------------
Confidence 3699999999999999976655544 7888887432 23567766321100
Q ss_pred CCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHH
Q 014219 78 RRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQ 157 (428)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~ 157 (428)
..+..++++ ++ +...+.+..+++++...... .......++++.|...+...
T Consensus 60 -----~~~~~P~~~---G~--------------------i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 60 -----LELKYPIEH---GI--------------------VENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred -----ceecCCCcC---CE--------------------EeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 011111111 11 23445667777777764211 12233578999999998999
Q ss_pred HHHHHHHH-HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCC
Q 014219 158 RQATEDAA-TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTR 236 (428)
Q Consensus 158 ~~~l~~a~-~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~ 236 (428)
|+.+.+.+ +..+++.+.++++|.++++++. ..+.+|||+|+++|+++.+. ++..-. .......
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------------~~~~lVVDiG~~~t~v~pv~--~G~~~~-~~~~~~~ 174 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG-------------RTTGLVIDSGDGVTHVVPVV--DGYVLP-HAIKRID 174 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------------CCEEEEEecCCCcceEEEEE--CCEEch-hhheecc
Confidence 99988855 5779999999999999999875 34579999999999999887 443211 1223379
Q ss_pred cchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc---------------eeEEEee-cccCc
Q 014219 237 LGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ---------------TSIEIDY-LYEGI 300 (428)
Q Consensus 237 ~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~---------------~~~~~~~-~~~~~ 300 (428)
+||.++|+.|.+++...- .. . +. ..-...++.+|+++..... ....... +.+|.
T Consensus 175 ~GG~~l~~~l~~~l~~~~---~~--~--~~---~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~ 244 (373)
T smart00268 175 IAGRDLTDYLKELLSERG---YQ--F--NS---SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGN 244 (373)
T ss_pred CcHHHHHHHHHHHHHhcC---CC--C--Cc---HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCC
Confidence 999999999999886510 00 0 00 0112456666665431110 0000011 12332
Q ss_pred ceeEEeeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC------
Q 014219 301 NFSSTITRARF---EQLNMDL-----FEKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL------ 364 (428)
Q Consensus 301 ~~~~~i~~~~~---~~~~~~~-----i~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~------ 364 (428)
. +.+..+.+ |.+|.|. ...|.+.+.+.++++..+. .-.+.|+|+||+|++|++.++|++.+.
T Consensus 245 ~--~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~ 322 (373)
T smart00268 245 T--IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKK 322 (373)
T ss_pred E--EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCC
Confidence 2 23332222 2234432 2467788888888765432 123679999999999999999999882
Q ss_pred -CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 365 -GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 365 -~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
...+..++++..++..||++++..
T Consensus 323 ~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 323 LKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred ceeEEecCCCCccceEeCcccccCc
Confidence 124556678889999999988855
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.81 E-value=2.1e-18 Score=165.73 Aligned_cols=318 Identities=17% Similarity=0.173 Sum_probs=194.2
Q ss_pred CCCCCceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-------------ceEecHhhhhhhhhCCCc
Q 014219 1 MAGKAGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-------------ESFVGDSAKNQVSTNPTN 67 (428)
Q Consensus 1 m~~~~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-------------~~~~G~~a~~~~~~~~~~ 67 (428)
||+ ...|.||+||.+++++++.+..|..+ +||+++.... +.++|++|....
T Consensus 1 ~~~--~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~------ 64 (414)
T PTZ00280 1 AST--LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS------ 64 (414)
T ss_pred CCC--CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc------
Confidence 664 34799999999999999966666544 6887766322 234566554210
Q ss_pred chhhhhhhcCCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEE
Q 014219 68 TVFDAKRLIGRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVI 147 (428)
Q Consensus 68 ~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vi 147 (428)
....+..++++ ++ +...+.+..+++++..... ........+++
T Consensus 65 -------------~~~~l~~Pi~~---G~--------------------I~dwd~~e~l~~~~~~~~L-~~~p~~~~vll 107 (414)
T PTZ00280 65 -------------KSYTLTYPMKH---GI--------------------VEDWDLMEKFWEQCIFKYL-RCEPEEHYFIL 107 (414)
T ss_pred -------------CCcEEecCccC---CE--------------------eCCHHHHHHHHHHHHHHhh-ccCCCCCceEE
Confidence 00011111111 11 2333455566666543211 12222346899
Q ss_pred EeCCCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeE
Q 014219 148 TVPAYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVI 226 (428)
Q Consensus 148 tvP~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~ 226 (428)
+.|..++...|+.+.+ +++..+++.+.+..+|.++++++....... ......+-+|||+|+++|+++.+. ++..
T Consensus 108 te~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~---~~~g~~tglVVDiG~~~T~i~PV~--~G~~ 182 (414)
T PTZ00280 108 TEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK---ELGGTLTGTVIDSGDGVTHVIPVV--DGYV 182 (414)
T ss_pred eeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccc---ccCCceeEEEEECCCCceEEEEEE--CCEE
Confidence 9999999999999877 555669999999999999999874332110 011234569999999999999776 3432
Q ss_pred EEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc-----------------e
Q 014219 227 RVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ-----------------T 289 (428)
Q Consensus 227 ~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~-----------------~ 289 (428)
-.-+. ....+||.++++.|.+++..+.. .+... .....++++|+++.-... .
T Consensus 183 l~~~~-~~~~~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~ 251 (414)
T PTZ00280 183 IGSSI-KHIPLAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFK 251 (414)
T ss_pred cccce-EEecCcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccc
Confidence 21122 23689999999999999864311 11110 112446667776542110 1
Q ss_pred eEEEeecccCcceeEEeeHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHH
Q 014219 290 SIEIDYLYEGINFSSTITRARFE---QLNMDLF------EKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQL 358 (428)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~i------~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~ 358 (428)
.+..+...++....+.++.+.|. -+|.|.+ ..|.+.|.+.+.++..+. .-.++|+|+||+|.+|++.++
T Consensus 252 ~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eR 331 (414)
T PTZ00280 252 KYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKR 331 (414)
T ss_pred eEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHH
Confidence 12222111233346677766654 2455532 256788888888876443 234789999999999999999
Q ss_pred HHhhcCCC-----------------------CcCCCCChhhHHHhHHHHHHH
Q 014219 359 LQDFFLGK-----------------------NLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 359 l~~~~~~~-----------------------~v~~~~~p~~ava~Ga~~~~~ 387 (428)
|++.+... ++..+++...++..|+++++.
T Consensus 332 L~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas 383 (414)
T PTZ00280 332 LQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLAS 383 (414)
T ss_pred HHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhccc
Confidence 99888321 133344445777889998885
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.80 E-value=3.4e-17 Score=152.51 Aligned_cols=213 Identities=14% Similarity=0.174 Sum_probs=139.1
Q ss_pred eEEEEeCCCCC-HHHHHHHHHHHHHc------------CCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEec
Q 014219 144 NAVITVPAYFS-DSQRQATEDAATQC------------GLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLG 210 (428)
Q Consensus 144 ~~vitvP~~~~-~~~~~~l~~a~~~a------------g~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG 210 (428)
.+++++|..+- .+.++.+++.+... .+..+.+++||.+|.+.+..+..............++|||+|
T Consensus 114 ~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG 193 (344)
T PRK13917 114 VVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFG 193 (344)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcC
Confidence 45568998874 34446777766432 225688999999999887765332100011134578999999
Q ss_pred CcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCcee
Q 014219 211 GGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTS 290 (428)
Q Consensus 211 ~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~ 290 (428)
++|||+++++ +..+. ...+++...|...+.+.+.+.+..+. +...+. ...++++-+. . .
T Consensus 194 ~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~---------~~~ie~~l~~---g---~ 252 (344)
T PRK13917 194 SGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGASIT---------PYMLEKGLEY---G---A 252 (344)
T ss_pred CCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCCCC---------HHHHHHHHHc---C---c
Confidence 9999999987 33332 22344588999999999988885332 111111 1233333111 1 1
Q ss_pred EEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCC
Q 014219 291 IEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCR 370 (428)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~ 370 (428)
+.+ ..+ ..+.+ ++++.++++++++++...+...+.. ..+++.|+|+||++.+ +++.|++.|+.. ..
T Consensus 253 i~~---~~~--~~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~ 318 (344)
T PRK13917 253 CKL---NQK--TVIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EK 318 (344)
T ss_pred EEe---CCC--ceEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EE
Confidence 111 011 11233 3556667888888887777776653 2468899999999985 899999999644 67
Q ss_pred CCChhhHHHhHHHHHHHHhcC
Q 014219 371 HINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 371 ~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.+||..|+|+|...+|..+.+
T Consensus 319 ~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 319 ADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred cCChHHHHHHHHHHHHHHHhc
Confidence 789999999999999987655
No 37
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.78 E-value=1.4e-18 Score=140.54 Aligned_cols=197 Identities=21% Similarity=0.298 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEE
Q 014219 125 MVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNV 204 (428)
Q Consensus 125 ~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~ 204 (428)
...+.+++.++++++.+.++..-++|..-.....+...+.++.||++...+++||.||+.-..... -
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d-------------g 142 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD-------------G 142 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC-------------C
Confidence 446778899999999988899999999887777778888999999999999999999988655443 3
Q ss_pred EEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 014219 205 LIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLS 284 (428)
Q Consensus 205 lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~ 284 (428)
.|||+|||||-+++++.+... +..+.+-||.+++.-|+-. ++.+ .+++|+.|..-.
T Consensus 143 ~VVDiGGGTTGIsi~kkGkVi-----y~ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k 198 (277)
T COG4820 143 GVVDIGGGTTGISIVKKGKVI-----YSADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHK 198 (277)
T ss_pred cEEEeCCCcceeEEEEcCcEE-----EeccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccc
Confidence 799999999999999966555 5555899999988776332 2222 478888877632
Q ss_pred cCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC
Q 014219 285 STIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL 364 (428)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~ 364 (428)
. .+|+-..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|++.+.+++.|
T Consensus 199 ~----------------------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l- 250 (277)
T COG4820 199 K----------------------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL- 250 (277)
T ss_pred c----------------------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-
Confidence 1 133345689999999999999999854 568999999999999999999999
Q ss_pred CCCcCCCCChhhHHHhHHHHHH
Q 014219 365 GKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 365 ~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
..+|..|..|.+..-.|-|.-+
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred ccccccCCCcceechhhhhhcc
Confidence 8999999999987777766543
No 38
>PTZ00452 actin; Provisional
Probab=99.76 E-value=4.5e-17 Score=153.83 Aligned_cols=302 Identities=17% Similarity=0.186 Sum_probs=191.8
Q ss_pred CceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC----------ceEecHhhhhhhhhCCCcchhhhhh
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT----------ESFVGDSAKNQVSTNPTNTVFDAKR 74 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~----------~~~~G~~a~~~~~~~~~~~~~~~k~ 74 (428)
....|.||+|+.+++++++.++.|..+ +||++..... ..++|++|....
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------------- 62 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------------- 62 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc-------------
Confidence 345799999999999999977777655 6777766322 234566553100
Q ss_pred hcCCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCC
Q 014219 75 LIGRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFS 154 (428)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~ 154 (428)
....+..++++ ++ +...+.+..+++|+..... ..+.....+++|-|..++
T Consensus 63 ------~~~~l~~Pi~~---G~--------------------I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~ 112 (375)
T PTZ00452 63 ------GVLAIKEPIQN---GI--------------------INSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNS 112 (375)
T ss_pred ------cCcEEcccCcC---CE--------------------EcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCC
Confidence 00111111111 11 2333444556666543211 133334578999999999
Q ss_pred HHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecC
Q 014219 155 DSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDG 233 (428)
Q Consensus 155 ~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~ 233 (428)
...|+.|.+ .++..+++.+.+...+.++++++. ..+-+|||+|.+.|+++-+. ++..-.-+...
T Consensus 113 ~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-------------~~tglVVDiG~~~t~v~PV~--dG~~l~~~~~r 177 (375)
T PTZ00452 113 KFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-------------KTIGLVVDSGEGVTHCVPVF--EGHQIPQAITK 177 (375)
T ss_pred HHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-------------CceeeeecCCCCcceEEEEE--CCEEeccceEE
Confidence 999999877 566679999999999999999764 23469999999999998776 44332222223
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC----------------ceeEEEeecc
Q 014219 234 NTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTI----------------QTSIEIDYLY 297 (428)
Q Consensus 234 ~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~----------------~~~~~~~~~~ 297 (428)
..+||.++++.|.++|..+ .. ..... .. ...++++|+.+.-.. ...+. +.
T Consensus 178 -~~~gG~~lt~~L~~lL~~~---~~--~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LP 243 (375)
T PTZ00452 178 -INLAGRLCTDYLTQILQEL---GY--SLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LP 243 (375)
T ss_pred -eeccchHHHHHHHHHHHhc---CC--CCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CC
Confidence 6899999999999888542 11 11111 00 233566666653111 01111 12
Q ss_pred cCcceeEEeeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC---
Q 014219 298 EGINFSSTITRARFE---QLNMDLF-----EKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL--- 364 (428)
Q Consensus 298 ~~~~~~~~i~~~~~~---~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~--- 364 (428)
+|. .+.++.+.|. -+|+|.+ ..|.+++.+.+.++..+. .-.++|+|+||+|.+|++.++|++.+.
T Consensus 244 Dg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~ 321 (375)
T PTZ00452 244 DGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLV 321 (375)
T ss_pred CCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhC
Confidence 332 3456655552 2345533 357778888888875443 235899999999999999999998883
Q ss_pred --C--CCcCCCCChhhHHHhHHHHHHHH
Q 014219 365 --G--KNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 365 --~--~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
. .++..+.++..++..|+++++..
T Consensus 322 p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 322 PSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred CCCceeEEecCCCcceeEEECchhhcCc
Confidence 1 24566778889999999999964
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.76 E-value=8.3e-17 Score=149.21 Aligned_cols=210 Identities=17% Similarity=0.197 Sum_probs=136.1
Q ss_pred ccCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecC
Q 014219 141 AVTNAVITVPAYFSDSQRQATEDAATQC---------GLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGG 211 (428)
Q Consensus 141 ~~~~~vitvP~~~~~~~~~~l~~a~~~a---------g~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~ 211 (428)
.+..+++++|..+-..+++.|++.+... -+..+.+++||.+|.+.+..+... .......++|||+|+
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~----~~~~~~~~lVIDIG~ 176 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGK----LLTGKEQSLIIDPGY 176 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCC----cccCcCcEEEEecCC
Confidence 4567999999999888889998887642 446789999999999988764321 111466789999999
Q ss_pred cceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeE
Q 014219 212 GTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSI 291 (428)
Q Consensus 212 ~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~ 291 (428)
+|||+.+++ +..+ .....++...|...+.+.+.+.+..+++... .. . ....+++ +.......
T Consensus 177 ~TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~~---~~-~-------~~~i~~~---l~~g~~~~- 238 (320)
T TIGR03739 177 FTFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTPA---YR-D-------IDRIDLA---LRTGKQPR- 238 (320)
T ss_pred Ceeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCCC---cc-C-------HHHHHHH---HHhCCcee-
Confidence 999998875 4433 2334555788999999999888876653220 00 1 1122221 11010000
Q ss_pred EEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCC
Q 014219 292 EIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRH 371 (428)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~ 371 (428)
..+. .+.++ ++.+.....++++...+.+.+. ...+++.|+|+||++. .+++.|++.||...+...
T Consensus 239 -----~~gk--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 239 -----IYQK--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -----ecce--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 0111 12222 2222333333444433333332 1245889999999997 789999999987777678
Q ss_pred CChhhHHHhHHHHHHH
Q 014219 372 INADEAVATGAAIQAA 387 (428)
Q Consensus 372 ~~p~~ava~Ga~~~~~ 387 (428)
+||..|+|+|-..+|.
T Consensus 304 ~dp~~ANarG~~~~g~ 319 (320)
T TIGR03739 304 DEPMFANVRGFQIAGL 319 (320)
T ss_pred CCcHHHHHHHHHHhhc
Confidence 9999999999988763
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.76 E-value=3.6e-17 Score=157.24 Aligned_cols=313 Identities=20% Similarity=0.236 Sum_probs=188.6
Q ss_pred CceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC-----ceEecHhhhhhhhhCCCcchhhhhhhcCCC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT-----ESFVGDSAKNQVSTNPTNTVFDAKRLIGRR 79 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~-----~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~ 79 (428)
...+|.||+|+.+++++++.+..|..+ +||++..... ...+|..+... ......
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~----------- 61 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP--RSNLEL----------- 61 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT--GTGEEE-----------
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc--hhheee-----------
Confidence 467899999999999999866666544 7888877433 35677764320 000000
Q ss_pred CCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHH
Q 014219 80 FSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQ 159 (428)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~ 159 (428)
..+++ .+. +...+.+..+++++.... -........++++.|..++...|+
T Consensus 62 ------~~p~~--------------------~g~---i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 62 ------RSPIE--------------------NGV---IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp ------EESEE--------------------TTE---ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHH
T ss_pred ------eeecc--------------------ccc---cccccccccccccccccc-cccccccceeeeeccccCCchhhh
Confidence 00000 011 233455666666666542 122234457999999999999999
Q ss_pred HHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcc
Q 014219 160 ATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLG 238 (428)
Q Consensus 160 ~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~G 238 (428)
.+.+ +++..+++.+.++.++.++++++... +-+|||+|++.|.++.+. ++..-. .......+|
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------------tglVVD~G~~~t~v~pV~--dG~~~~-~~~~~~~~G 175 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT-------------TGLVVDIGYSSTSVVPVV--DGYVLP-HSIKRSPIG 175 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------------SEEEEEESSS-EEEEEEE--TTEE-G-GGBEEES-S
T ss_pred hhhhhhhcccccceeeeeecccccccccccc-------------cccccccceeeeeeeeee--eccccc-ccccccccc
Confidence 8877 56677999999999999999887644 359999999999998775 553211 112236899
Q ss_pred hHHHHHHHHHHHHHH-HHhhhCCCCC------CCHHHHHHHHHHHHHHHHHhc---c------------CCceeEEEeec
Q 014219 239 GVDFNNRMVDYFVEE-FKRKNKIDIS------GNARALHRLRIACESAKRTLS---S------------TIQTSIEIDYL 296 (428)
Q Consensus 239 g~~id~~l~~~l~~~-~~~~~~~~~~------~~~~~~~~l~~~~e~~K~~l~---~------------~~~~~~~~~~~ 296 (428)
|.++++.|.+++..+ +......... ........-...++.+|+... . .....+.+
T Consensus 176 G~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l--- 252 (393)
T PF00022_consen 176 GDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL--- 252 (393)
T ss_dssp HHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----
T ss_pred HHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---
Confidence 999999999999773 1111110000 001111112344455555532 1 11122222
Q ss_pred ccCcceeEEeeHHHHH--H-HHHHHH------------HHHHHHHHHHHHHcCCCCC--CCCeEEEEcCCcCcHHHHHHH
Q 014219 297 YEGINFSSTITRARFE--Q-LNMDLF------------EKCIEHVDTCLAKAKIDRT--AVDDVVIVGGSSRIPKLQQLL 359 (428)
Q Consensus 297 ~~~~~~~~~i~~~~~~--~-~~~~~i------------~~i~~~i~~~l~~~~~~~~--~i~~Vvl~GG~s~~~~l~~~l 359 (428)
.+|. .+.+..+.+. + +|.|.. ..+.+.|.+.+.++..+.. -...|+|+||+|++|++.++|
T Consensus 253 Pdg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL 330 (393)
T PF00022_consen 253 PDGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERL 330 (393)
T ss_dssp TTSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHH
T ss_pred cccc--ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHH
Confidence 2343 4455544432 2 233322 1578888888888754431 147999999999999999999
Q ss_pred HhhcC-------CCCcCCCC-ChhhHHHhHHHHHHHHh
Q 014219 360 QDFFL-------GKNLCRHI-NADEAVATGAAIQAAIL 389 (428)
Q Consensus 360 ~~~~~-------~~~v~~~~-~p~~ava~Ga~~~~~~~ 389 (428)
++.+. ..++..+. +|..++..||++++..-
T Consensus 331 ~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 331 QQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred HHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 98883 23566666 89999999999999754
No 41
>PTZ00281 actin; Provisional
Probab=99.76 E-value=1.2e-17 Score=158.21 Aligned_cols=308 Identities=18% Similarity=0.196 Sum_probs=193.6
Q ss_pred CCCCCceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC----------ceEecHhhhhhhhhCCCcchh
Q 014219 1 MAGKAGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT----------ESFVGDSAKNQVSTNPTNTVF 70 (428)
Q Consensus 1 m~~~~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~----------~~~~G~~a~~~~~~~~~~~~~ 70 (428)
|..+....|.||+|+.+++++++.++.|..+ +||+++..+. ..++|+++....
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~--------- 63 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR--------- 63 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---------
Confidence 6666566899999999999999977766554 6777665321 234555543100
Q ss_pred hhhhhcCCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeC
Q 014219 71 DAKRLIGRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVP 150 (428)
Q Consensus 71 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP 150 (428)
....+..++++ +. +...+.+..+++++..... ........+++|-|
T Consensus 64 ----------~~~~l~~Pi~~---G~--------------------i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~ 109 (376)
T PTZ00281 64 ----------GILTLKYPIEH---GI--------------------VTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEA 109 (376)
T ss_pred ----------cCcEEeccCcC---CE--------------------EcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecC
Confidence 00001111111 11 2333445556666553211 12333457899999
Q ss_pred CCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEE
Q 014219 151 AYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVR 229 (428)
Q Consensus 151 ~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~ 229 (428)
..++...|+.|.+ +++..+++.+.+..+|.++++++. ..+-+|||+|.+.|.++-+.-+-... -
T Consensus 110 ~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g-------------~~tglVVDiG~~~t~v~PV~dG~~~~--~ 174 (376)
T PTZ00281 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-------------RTTGIVMDSGDGVSHTVPIYEGYALP--H 174 (376)
T ss_pred CCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-------------CceEEEEECCCceEEEEEEEecccch--h
Confidence 9999999999887 777789999999999999998764 23569999999999998665332221 1
Q ss_pred EecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc--------------eeEEEee
Q 014219 230 ATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ--------------TSIEIDY 295 (428)
Q Consensus 230 ~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~--------------~~~~~~~ 295 (428)
......+||.++++.|.+.|..+- . .+.. .. -...++++|+.+.-... ......
T Consensus 175 -~~~~~~~GG~~lt~~L~~lL~~~~---~--~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~- 242 (376)
T PTZ00281 175 -AILRLDLAGRDLTDYMMKILTERG---Y--SFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE- 242 (376)
T ss_pred -heeeccCcHHHHHHHHHHHHHhcC---C--CCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE-
Confidence 222368999999999998885431 1 1111 00 12446777777542110 001111
Q ss_pred cccCcceeEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC-
Q 014219 296 LYEGINFSSTITRARF---EQLNMDLF-----EKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL- 364 (428)
Q Consensus 296 ~~~~~~~~~~i~~~~~---~~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~- 364 (428)
+.+|. .+.++.+.| |-+|.|.+ ..|.+.+.+.+.++..+. .-.++|+|+||+|.+|++.++|++.+.
T Consensus 243 LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 243 LPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA 320 (376)
T ss_pred CCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence 12332 345555443 23455532 256778888888765442 224799999999999999999988883
Q ss_pred ------CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 365 ------GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 365 ------~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
..++..+.++..++..|+++++..
T Consensus 321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 321 LAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred hCCCCcceEEecCCCCceeEEECcccccCc
Confidence 124566678889999999999964
No 42
>PTZ00004 actin-2; Provisional
Probab=99.73 E-value=1.3e-16 Score=151.54 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=192.7
Q ss_pred CCCCCceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC----------ceEecHhhhhhhhhCCCcchh
Q 014219 1 MAGKAGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT----------ESFVGDSAKNQVSTNPTNTVF 70 (428)
Q Consensus 1 m~~~~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~----------~~~~G~~a~~~~~~~~~~~~~ 70 (428)
|+-+....|.||+|+.+++++++.++.|..+ +||+++.... ..++|+++....
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--------- 63 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR--------- 63 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc---------
Confidence 5555566899999999999999977666544 6887776432 234565543110
Q ss_pred hhhhhcCCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeC
Q 014219 71 DAKRLIGRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVP 150 (428)
Q Consensus 71 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP 150 (428)
....+..++++ +. +...+.+..+++++..... ........+++|.|
T Consensus 64 ----------~~~~l~~Pi~~---G~--------------------i~d~d~~e~i~~~~~~~~l-~v~~~~~pvllte~ 109 (378)
T PTZ00004 64 ----------GILTLKYPIEH---GI--------------------VTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEA 109 (378)
T ss_pred ----------ccceEcccCcC---CE--------------------EcCHHHHHHHHHHHHHhhc-ccCCccCcceeecC
Confidence 00011111111 11 2233445556666433111 12233457889999
Q ss_pred CCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEE
Q 014219 151 AYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVR 229 (428)
Q Consensus 151 ~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~ 229 (428)
..++...|+.+.+ +++..+++.+.+..+|.++++++. ..+-+|||+|++.|+++.+. ++..-.-
T Consensus 110 ~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g-------------~~tglVVDiG~~~t~v~pV~--dG~~l~~ 174 (378)
T PTZ00004 110 PLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG-------------RTTGIVLDSGDGVSHTVPIY--EGYSLPH 174 (378)
T ss_pred CCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC-------------CceEEEEECCCCcEEEEEEE--CCEEeec
Confidence 9999999988766 666789999999999999999764 23469999999999998776 4433222
Q ss_pred EecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCc-------------eeEEEee-
Q 014219 230 ATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQ-------------TSIEIDY- 295 (428)
Q Consensus 230 ~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~-------------~~~~~~~- 295 (428)
+.. ..++||.++++.|.+++..+. .. +.. .. -...++++|+.+.-... ......+
T Consensus 175 ~~~-~~~~GG~~lt~~L~~lL~~~~---~~--~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~ 243 (378)
T PTZ00004 175 AIH-RLDVAGRDLTEYMMKILHERG---TT--FTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE 243 (378)
T ss_pred cee-eecccHHHHHHHHHHHHHhcC---CC--CCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE
Confidence 233 378999999999999885431 11 111 10 12345666666431110 0001111
Q ss_pred cccCcceeEEeeHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC
Q 014219 296 LYEGINFSSTITRARFE---QLNMDL------FEKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL 364 (428)
Q Consensus 296 ~~~~~~~~~~i~~~~~~---~~~~~~------i~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~ 364 (428)
+.+|. .+.++.+.|. -+|.|. ...|.+++.+.+.++..+. .-..+|+|+||+|.+|++.++|++.+.
T Consensus 244 lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~ 321 (378)
T PTZ00004 244 LPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELT 321 (378)
T ss_pred CCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHH
Confidence 22333 3445554432 345553 2356788888888765442 224789999999999999999999883
Q ss_pred -------CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 365 -------GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 365 -------~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
..++..+.++..++..|+++++..
T Consensus 322 ~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 322 TLAPSTMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred HhCCCCccEEEecCCCCceeEEECcccccCc
Confidence 124566778899999999999863
No 43
>PTZ00466 actin-like protein; Provisional
Probab=99.73 E-value=1e-16 Score=151.49 Aligned_cols=303 Identities=17% Similarity=0.173 Sum_probs=188.9
Q ss_pred ceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCC----------ceEecHhhhhhhhhCCCcchhhhhhh
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDT----------ESFVGDSAKNQVSTNPTNTVFDAKRL 75 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~----------~~~~G~~a~~~~~~~~~~~~~~~k~~ 75 (428)
...|.||.|+.+++++++.+..|..+ +||+++.... ..++|++|....
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~-------------- 69 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR-------------- 69 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC--------------
Confidence 34688999999999999977766654 6777765322 234565543110
Q ss_pred cCCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCH
Q 014219 76 IGRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSD 155 (428)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~ 155 (428)
....+..++++ ++ +...+.+..+++++.+.. ........+++|-|..++.
T Consensus 70 -----~~~~l~~Pi~~---G~--------------------v~dwd~~e~iw~~~f~~l--~v~~~~~pvllte~~~~~~ 119 (380)
T PTZ00466 70 -----GLLKVTYPINH---GI--------------------IENWNDMENIWIHVYNSM--KINSEEHPVLLTEAPLNPQ 119 (380)
T ss_pred -----cCceeCccccC---Ce--------------------ECCHHHHHHHHHHHHhhc--ccCCccCeEEEecCccccH
Confidence 00001111111 12 223334445555554321 1223345788999999999
Q ss_pred HHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCC
Q 014219 156 SQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGN 234 (428)
Q Consensus 156 ~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~ 234 (428)
..|+.+.+ +++..+++.+.+..++.++++++. ..+-+|||+|.+.|.++-+. ++..-.-+.. .
T Consensus 120 ~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-------------~~tglVVD~G~~~t~v~PV~--~G~~~~~~~~-~ 183 (380)
T PTZ00466 120 KNKEKIAEVFFETFNVPALFISIQAILSLYSCG-------------KTNGTVLDCGDGVCHCVSIY--EGYSITNTIT-R 183 (380)
T ss_pred HHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-------------CceEEEEeCCCCceEEEEEE--CCEEeeccee-E
Confidence 99999866 667789999999999999999864 23569999999999998666 4433222222 3
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC-----------ceeEEEee-cccCcce
Q 014219 235 TRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTI-----------QTSIEIDY-LYEGINF 302 (428)
Q Consensus 235 ~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~-----------~~~~~~~~-~~~~~~~ 302 (428)
..+||.++++.|.+++..+ +..... ..-...++++|+.+.-.. .......+ +.+|.
T Consensus 184 ~~~GG~~lt~~L~~lL~~~-----~~~~~~-----~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~-- 251 (380)
T PTZ00466 184 TDVAGRDITTYLGYLLRKN-----GHLFNT-----SAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGS-- 251 (380)
T ss_pred ecCchhHHHHHHHHHHHhc-----CCCCCc-----HHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCc--
Confidence 6899999999999888532 101110 111344666777653110 00000111 12332
Q ss_pred eEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC-----C--
Q 014219 303 SSTITRARF---EQLNMDLF-----EKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL-----G-- 365 (428)
Q Consensus 303 ~~~i~~~~~---~~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~-----~-- 365 (428)
.+.+..+.| |-+|.|-+ ..|.+++.+.+.++..+. .-..+|+|+||+|.+|++.++|++.+. .
T Consensus 252 ~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~ 331 (380)
T PTZ00466 252 QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDIT 331 (380)
T ss_pred EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCce
Confidence 345555554 23445532 256777888888765443 234899999999999999999999883 1
Q ss_pred CCcCCCCChhhHHHhHHHHHHHH
Q 014219 366 KNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 366 ~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
.++..+.++..++..|+++++..
T Consensus 332 v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 332 IRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred EEEecCCCCceeEEECchhhcCc
Confidence 24666778889999999999863
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.64 E-value=4.2e-14 Score=133.57 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCce-EEEEEEecCcceEEEEEEEeCCeEEEEEecC
Q 014219 155 DSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVK-NVLIFDLGGGTFDVSLLAIENGVIRVRATDG 233 (428)
Q Consensus 155 ~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~-~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~ 233 (428)
....+.+.++++.+|++...+..+|.|.+..+....... . ...... .++++|+|+++|+++++. ++.+. ..+
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~-~-~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~---~~r 214 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQL-A-SRTYRLTDAALVDIGATSSTLNLLH--PGRML---FTR 214 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhC-c-cccccCceEEEEEECCCcEEEEEEE--CCeEE---EEE
Confidence 455778899999999999999999999887763110000 0 001133 499999999999999998 44332 445
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHH
Q 014219 234 NTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQ 313 (428)
Q Consensus 234 ~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 313 (428)
..++||.++++.+.+.+. .+ ..+||+.|...+.... .-.+
T Consensus 215 ~i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~ 254 (348)
T TIGR01175 215 EVPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPLL---------------------YDPE 254 (348)
T ss_pred EeechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCCc---------------------hhHH
Confidence 589999999999965441 11 4788888876431110 0124
Q ss_pred HHHHHHHHHHHHHHHHHHHcC--CCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcC-------------------CCC
Q 014219 314 LNMDLFEKCIEHVDTCLAKAK--IDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLC-------------------RHI 372 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~--~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~-------------------~~~ 372 (428)
++++.++++...|.+.++-.. .....++.|+|+||++++++|.+.+++.| +.++. ...
T Consensus 255 ~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~ 333 (348)
T TIGR01175 255 VLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVD 333 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhh
Confidence 566666677777777765432 22245899999999999999999999999 43222 124
Q ss_pred ChhhHHHhHHHHHH
Q 014219 373 NADEAVATGAAIQA 386 (428)
Q Consensus 373 ~p~~ava~Ga~~~~ 386 (428)
.|.+++|.|+|+++
T Consensus 334 ~~~~~~a~Glalr~ 347 (348)
T TIGR01175 334 APALMTALGLALRG 347 (348)
T ss_pred hHHHHHHhhHhhcC
Confidence 67889999999875
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.63 E-value=3.1e-14 Score=133.46 Aligned_cols=184 Identities=17% Similarity=0.221 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCC
Q 014219 155 DSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGN 234 (428)
Q Consensus 155 ~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~ 234 (428)
.+..+.+.++++.+|++...+--++.|.+..+........ .....+.++++|+|+.+|.+++++ ++... ..+.
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~--~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~---f~R~ 207 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLP--DEEDAETVALVDIGASSTTVIIFQ--NGKPI---FSRS 207 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST------T-EEEEEEE-SS-EEEEEEE--TTEEE---EEEE
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCC--cccccceEEEEEecCCeEEEEEEE--CCEEE---EEEE
Confidence 4446778889999999998888888887766544221100 011356799999999999999998 55433 3445
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHH
Q 014219 235 TRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQL 314 (428)
Q Consensus 235 ~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 314 (428)
..+||.++++.+.+.+.-. ..++|+.|...+... +...++
T Consensus 208 i~~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~~---------------------~~~~~~ 247 (340)
T PF11104_consen 208 IPIGGNDLTEAIARELGID-------------------FEEAEELKRSGGLPE---------------------EYDQDA 247 (340)
T ss_dssp ES-SHHHHHHHHHHHTT---------------------HHHHHHHHHHT---------------------------HHHH
T ss_pred EeeCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCCc---------------------chHHHH
Confidence 8999999999998776322 377777777622100 223455
Q ss_pred HHHHHHHHHHHHHHHHHH--cCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcC---------CCC----------C
Q 014219 315 NMDLFEKCIEHVDTCLAK--AKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLC---------RHI----------N 373 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~--~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~---------~~~----------~ 373 (428)
+++.++++...|.+.++- .......++.|+|+||+|++++|.+.|++.+ +.+|. .+. .
T Consensus 248 l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~ 326 (340)
T PF11104_consen 248 LRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDA 326 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhh
Confidence 666666666666666662 1122346899999999999999999999999 44322 222 3
Q ss_pred hhhHHHhHHHHHH
Q 014219 374 ADEAVATGAAIQA 386 (428)
Q Consensus 374 p~~ava~Ga~~~~ 386 (428)
|.+++|.|+|+++
T Consensus 327 ~~~avA~GLAlR~ 339 (340)
T PF11104_consen 327 PQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcC
Confidence 7789999999986
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.62 E-value=1.6e-14 Score=133.46 Aligned_cols=175 Identities=15% Similarity=0.239 Sum_probs=101.9
Q ss_pred CceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 014219 170 LQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDY 249 (428)
Q Consensus 170 ~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 249 (428)
+..+.+++|+.||.+.+...... ...++|||+||+|+|++++. +.........+....|...+.+.+.+.
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~~~~--------~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~ 209 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMDLDE--------DESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQA 209 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHTS-T--------TSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHH
T ss_pred EeeEEEEcccHHHHHHHHHhhcc--------cCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHH
Confidence 36789999999999998877332 56789999999999999886 322122223333578999999999887
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHH
Q 014219 250 FVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTC 329 (428)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~ 329 (428)
+... ..... ...++++-.... .... +....... =..+++.++++..++++.+.+.+.
T Consensus 210 l~~~-~~~~s-------------~~~~~~ii~~~~--~~~~--~~~~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~ 266 (318)
T PF06406_consen 210 LRSA-GIDTS-------------ELQIDDIIRNRK--DKGY--LRQVINDE-----DVIDDVSEVIEEAVEELINRILRE 266 (318)
T ss_dssp TT---SBHHH-------------HHHHHHHHHTTT---HHH--HHHHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCc-------------HHHHHHHHHhhh--ccce--ecccccch-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7541 10000 011222211000 0000 00000000 012344455555555555555554
Q ss_pred HHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCCChhhHHHhHHH
Q 014219 330 LAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHINADEAVATGAA 383 (428)
Q Consensus 330 l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~~p~~ava~Ga~ 383 (428)
+.. ..+++.|+|+||++. .+.+.|++.++ ...+....||++|.|+|.+
T Consensus 267 ~~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 267 LGD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HTT----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred Hhh----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 432 245789999999996 79999999985 3578899999999999975
No 47
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.59 E-value=1e-13 Score=123.44 Aligned_cols=317 Identities=17% Similarity=0.204 Sum_probs=186.4
Q ss_pred ceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEe---------CCceEecHhhhhhhhhCCCcchhhhhhhc
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFT---------DTESFVGDSAKNQVSTNPTNTVFDAKRLI 76 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~---------~~~~~~G~~a~~~~~~~~~~~~~~~k~~l 76 (428)
-..|.||.|+..++++|+..+-|+.+ +||++... .++.+++..|.
T Consensus 11 v~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai------------------ 64 (426)
T KOG0679|consen 11 VSALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAI------------------ 64 (426)
T ss_pred cceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhc------------------
Confidence 45799999999999999977766555 78877741 11223444332
Q ss_pred CCCCCChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHH
Q 014219 77 GRRFSDVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDS 156 (428)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~ 156 (428)
+.+....++...+++ |. ....++..+.++|.++.. -.++.....+.+|.|++-+.+
T Consensus 65 ~~pr~gmEv~~~i~n--------------------Gl---v~dWD~~~~~w~~~~~~~-Lk~~p~ehP~litEp~wN~~~ 120 (426)
T KOG0679|consen 65 HVPRPGMEVKTPIKN--------------------GL---VEDWDLFEMQWRYAYKNQ-LKVNPEEHPVLITEPPWNTRA 120 (426)
T ss_pred cCCCCCCeeccchhc--------------------CC---cccHHHHHHHHHHHHhhh-hhcCccccceeeecCCCCcHH
Confidence 333333333333332 11 233445566666666421 123344467899999988888
Q ss_pred HHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCC
Q 014219 157 QRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNT 235 (428)
Q Consensus 157 ~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~ 235 (428)
.|+.+.+ +++...++..+++.+|+|+|++.+ ..+.+|||+|+++|.++-+. ++.+-..+... .
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-------------rstalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s 184 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANG-------------RSTALVVDIGATHTSVSPVH--DGYVLQKGVVK-S 184 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcC-------------CCceEEEEecCCCceeeeee--cceEeeeeeEe-c
Confidence 8888766 778889999999999999999877 45579999999999998765 56555555555 6
Q ss_pred CcchHHHHHHHHHHHHHHHHh-------hhCC----C------CCCCH----HHHHHH--HHHHHHHHHHhccCCceeEE
Q 014219 236 RLGGVDFNNRMVDYFVEEFKR-------KNKI----D------ISGNA----RALHRL--RIACESAKRTLSSTIQTSIE 292 (428)
Q Consensus 236 ~~Gg~~id~~l~~~l~~~~~~-------~~~~----~------~~~~~----~~~~~l--~~~~e~~K~~l~~~~~~~~~ 292 (428)
.+||+.|+..+.+.+..+-.+ ..+. . ..... +.+..+ ..-.++.|+.+....+..++
T Consensus 185 ~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~d 264 (426)
T KOG0679|consen 185 PLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFD 264 (426)
T ss_pred ccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 999999999999988754111 1000 0 01111 111111 12234556655433322111
Q ss_pred ------E---e-ecccCcceeEEeeHHHH-HHHHHHHH-----------------HHHHHHHHHHHHHcCCCC--CCCCe
Q 014219 293 ------I---D-YLYEGINFSSTITRARF-EQLNMDLF-----------------EKCIEHVDTCLAKAKIDR--TAVDD 342 (428)
Q Consensus 293 ------~---~-~~~~~~~~~~~i~~~~~-~~~~~~~i-----------------~~i~~~i~~~l~~~~~~~--~~i~~ 342 (428)
+ . .+.+|....+...|-.+ +.+|+|-. -.+.+++...+..+..+. .-...
T Consensus 265 e~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~n 344 (426)
T KOG0679|consen 265 EEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGN 344 (426)
T ss_pred ccccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhcc
Confidence 0 0 11233322222222221 12334321 122334444444443322 22479
Q ss_pred EEEEcCCcCcHHHHHHHHhhc----CCCCc--C---CCCChhhHHHhHHHHHHHH
Q 014219 343 VVIVGGSSRIPKLQQLLQDFF----LGKNL--C---RHINADEAVATGAAIQAAI 388 (428)
Q Consensus 343 Vvl~GG~s~~~~l~~~l~~~~----~~~~v--~---~~~~p~~ava~Ga~~~~~~ 388 (428)
|+++||.|.++++.++|.+.+ |+.++ . ....-..+...|..+++..
T Consensus 345 VivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILASL 399 (426)
T KOG0679|consen 345 VIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILASL 399 (426)
T ss_pred EEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhcc
Confidence 999999999999999998887 33222 1 2334556778888777643
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.54 E-value=5.7e-13 Score=117.08 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCC
Q 014219 155 DSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGN 234 (428)
Q Consensus 155 ~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~ 234 (428)
.+..+....+++.||+....+--|..|...++.....+-. ....-..++|+|||+.++.++++.-+... +...
T Consensus 148 kE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~--~~~a~~~vav~~Igat~s~l~vi~~gk~l-----y~r~ 220 (354)
T COG4972 148 KEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG--PEEAAMKVAVFDIGATSSELLVIQDGKIL-----YTRE 220 (354)
T ss_pred hhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhC--CchhhhhheeeeecccceEEEEEECCeee-----eEee
Confidence 3445667889999999998999999998887763322200 00012236799999999999999843333 5666
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHH
Q 014219 235 TRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQL 314 (428)
Q Consensus 235 ~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 314 (428)
.++||+.+++++.+... .+ ...++.+|....... +--.++
T Consensus 221 ~~~g~~Qlt~~i~r~~~--------L~-----------~~~a~~~k~~~~~P~---------------------~y~~~v 260 (354)
T COG4972 221 VPVGTDQLTQEIQRAYS--------LT-----------EEKAEEIKRGGTLPT---------------------DYGSEV 260 (354)
T ss_pred ccCcHHHHHHHHHHHhC--------CC-----------hhHhHHHHhCCCCCC---------------------chhHHH
Confidence 89999999999966552 11 367777777644222 222456
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCC-------------------cCCCCC
Q 014219 315 NMDLFEKCIEHVDTCLAKAKI--DRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKN-------------------LCRHIN 373 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~--~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~-------------------v~~~~~ 373 (428)
+.|+++++.+.|.+.|+-.-. .-.+++.|+|+||++.+.+|.+.+.+++ +.+ -...+-
T Consensus 261 l~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl-~~~t~vanPf~~~~~~~~v~k~~l~~da 339 (354)
T COG4972 261 LRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL-SIPTEVANPFAYMALNVKVNKGYLQTDA 339 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh-CCCeEeeCHHHHHhhhhccccccccccc
Confidence 777777777777777775322 2357899999999999999999999999 332 234557
Q ss_pred hhhHHHhHHHHHH
Q 014219 374 ADEAVATGAAIQA 386 (428)
Q Consensus 374 p~~ava~Ga~~~~ 386 (428)
|.+++|.|+++++
T Consensus 340 p~l~ia~GLAlRg 352 (354)
T COG4972 340 PALTIALGLALRG 352 (354)
T ss_pred hHHHHHhhhhhhc
Confidence 7888999988876
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.52 E-value=9.3e-13 Score=125.22 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHH-HHHcCCccCeEEEEeCCCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccc
Q 014219 121 EISSMVLKKKREIA-EAFVGTAVTNAVITVPAYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAA 198 (428)
Q Consensus 121 ~l~~~~l~~l~~~~-~~~~~~~~~~~vitvP~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~ 198 (428)
+....+.+++...- ..........+++|.|..+....|+.+.+ +++...++.+.+..+++++.++.....
T Consensus 84 ~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-------- 155 (444)
T COG5277 84 DAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-------- 155 (444)
T ss_pred HHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC--------
Confidence 34455555554432 11122234579999999999999888766 788889999999999999999887553
Q ss_pred cCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCC-----CCHHHHHHHH
Q 014219 199 SGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDIS-----GNARALHRLR 273 (428)
Q Consensus 199 ~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~l~ 273 (428)
.+.+|+|+|.+.|+++-+.-+-.. .- ......+||++++..+.+.+............. ........+.
T Consensus 156 ---~~g~ViD~G~~~t~v~PV~DG~~l--~~-a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik 229 (444)
T COG5277 156 ---ETGLVIDSGDSVTHVIPVVDGIVL--PK-AVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIK 229 (444)
T ss_pred ---CceEEEEcCCCceeeEeeeccccc--cc-cceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHH
Confidence 356999999999999966633221 11 222379999999999999998743211111111 1111111111
Q ss_pred ------------------HHHHHHHHHhc---c------CCceeEEE-e-ecccCcceeEEeeHH-HHH---HHHHHH--
Q 014219 274 ------------------IACESAKRTLS---S------TIQTSIEI-D-YLYEGINFSSTITRA-RFE---QLNMDL-- 318 (428)
Q Consensus 274 ------------------~~~e~~K~~l~---~------~~~~~~~~-~-~~~~~~~~~~~i~~~-~~~---~~~~~~-- 318 (428)
...++.++... . ........ . ...++. .+.+..+ .|. .+|.|-
T Consensus 230 ~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~i~~~~e~rf~~pE~lF~pe~~ 307 (444)
T COG5277 230 EEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGE--EIEFGNEERFKAPEILFKPELP 307 (444)
T ss_pred HhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCc--eEeechhhhhhcchhhcCCccc
Confidence 11112222110 0 00000000 0 011121 2222222 111 112221
Q ss_pred H-----HH---------------------------HHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC
Q 014219 319 F-----EK---------------------------CIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL 364 (428)
Q Consensus 319 i-----~~---------------------------i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~ 364 (428)
+ +. |.+++.+.+..+.... .....|+|+||+|.+|++.++|++.+.
T Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~ 387 (444)
T COG5277 308 ISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELT 387 (444)
T ss_pred cccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHH
Confidence 0 11 5555666655544222 235899999999999999999999884
Q ss_pred -------CCCcCCCCChhhHHHhHHHHHHH
Q 014219 365 -------GKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 365 -------~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
...+..+.+|.+.+..||+.++.
T Consensus 388 ~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 388 SLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhcCCCCceeeecCCchhhccccchhhhcc
Confidence 23678888999999999999997
No 50
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=99.39 E-value=2.8e-10 Score=114.90 Aligned_cols=330 Identities=16% Similarity=0.208 Sum_probs=190.0
Q ss_pred EecHhhhhhhhhC----CCcchhhhhhhcCC--------CCCChh---hhhh-cccCCeeEEECCCCCceEEE-E----E
Q 014219 52 FVGDSAKNQVSTN----PTNTVFDAKRLIGR--------RFSDVS---VQSD-IKHWPFKVIAGPDDKPMVEV-K----Y 110 (428)
Q Consensus 52 ~~G~~a~~~~~~~----~~~~~~~~k~~l~~--------~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~-~----~ 110 (428)
.+|.+|.+..... ....++++|++|=. ..+... ...+ ....|+....+++|.+...+ . .
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 3899998877543 23346788887721 111000 1111 11122333445666665555 1 1
Q ss_pred CCeEEEEeHHHHHHHHHHHHHHHHHHHcCC--------------ccCeEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 014219 111 KGKQKQVAAEEISSMVLKKKREIAEAFVGT--------------AVTNAVITVPAYFSDSQRQATEDAATQC-------- 168 (428)
Q Consensus 111 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~--------------~~~~~vitvP~~~~~~~~~~l~~a~~~a-------- 168 (428)
..-...++...+...+|..++.+|.-+.+. ...++++|+|+.....+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 122234677788888888888877665543 2458999999999999999999888876
Q ss_pred CC--------------------ce-EeeechhHHHHHHhhccccccC---------------------CccccCceEEEE
Q 014219 169 GL--------------------QV-LKIIAEPTAAAIAYGLDRQQQG---------------------GIAASGVKNVLI 206 (428)
Q Consensus 169 g~--------------------~~-v~~~~E~~Aaa~~~~~~~~~~~---------------------~~~~~~~~~~lv 206 (428)
|. +. ..-.+|+.|.-+-|++...... .....+.-++.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 32 11 1223566665555544311100 112234667999
Q ss_pred EEecCcceEEEEEEEe----CCeE-----EEEEecCCCCcchHHHHHHHHHHHH-HHHHh----------------hhCC
Q 014219 207 FDLGGGTFDVSLLAIE----NGVI-----RVRATDGNTRLGGVDFNNRMVDYFV-EEFKR----------------KNKI 260 (428)
Q Consensus 207 vDiG~~t~d~~~~~~~----~~~~-----~~~~~~~~~~~Gg~~id~~l~~~l~-~~~~~----------------~~~~ 260 (428)
|||||||||+.+-++. .+.. +.+-. .+..++|++|-..+++.+. ..+.. -++.
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FR-eGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFR-EGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhh-hhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 9999999999998776 2211 12222 3478999998888775443 21111 1111
Q ss_pred CCCCCHHHH----------------HHHHHHHHHHHHHhccCCceeEEEeec---------------------------c
Q 014219 261 DISGNARAL----------------HRLRIACESAKRTLSSTIQTSIEIDYL---------------------------Y 297 (428)
Q Consensus 261 ~~~~~~~~~----------------~~l~~~~e~~K~~l~~~~~~~~~~~~~---------------------------~ 297 (428)
+ ...... .+++.++|+.-. +.........+..+ .
T Consensus 650 d--g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~-~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~F 726 (1002)
T PF07520_consen 650 D--GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDP-LDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDF 726 (1002)
T ss_pred c--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCc
Confidence 1 000000 111222222100 00000000010000 0
Q ss_pred cCcceeEEeeHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCC--------
Q 014219 298 EGINFSSTITRARFEQLNM---DLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGK-------- 366 (428)
Q Consensus 298 ~~~~~~~~i~~~~~~~~~~---~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~-------- 366 (428)
+=.+..+.++.+.+...|- ..+.+....+-+++...+ .|.++|+|--|++|+++..+++.+|-.
T Consensus 727 dildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~ 801 (1002)
T PF07520_consen 727 DILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLH 801 (1002)
T ss_pred ceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecC
Confidence 0012456888888888775 566666677777777744 568999999999999999999999410
Q ss_pred -----------CcCCCCChhhHHHhHHHHHHHHhc
Q 014219 367 -----------NLCRHINADEAVATGAAIQAAILS 390 (428)
Q Consensus 367 -----------~v~~~~~p~~ava~Ga~~~~~~~~ 390 (428)
+-.+..||..++|.||.+..-...
T Consensus 802 ~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 802 GYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 123778999999999988776654
No 51
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.37 E-value=5e-11 Score=106.57 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=111.7
Q ss_pred eeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 014219 174 KIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEE 253 (428)
Q Consensus 174 ~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 253 (428)
..++|..|.+.+...-... .-.|+|+||..+.+..+. ++...-....+.+..|+..+.+.+++.+.-.
T Consensus 73 ~~~~ei~~~~~g~~~~~~~----------~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~ 140 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE----------ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVS 140 (248)
T ss_pred CceEEhhHHHHHHHHHCCC----------CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCC
Confidence 3577888877766544322 126999999999998887 5555555566768889988888887776211
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC----ceeEEEe-ecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHH
Q 014219 254 FKRKNKIDISGNARALHRLRIACESAKRTLSSTI----QTSIEID-YLYEGINFSSTITRARFEQLNMDLFEKCIEHVDT 328 (428)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~----~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~ 328 (428)
.++++.++..-.... ...+..+ ..... .....+ .++++..+.+.+...+.+
T Consensus 141 -------------------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~ 196 (248)
T TIGR00241 141 -------------------VEELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVK---KEDILAGVYESIAERVAE 196 (248)
T ss_pred -------------------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHH
Confidence 244555444421111 0111000 00000 000111 245666777777777777
Q ss_pred HHHHcCCCCCCCC-eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHH
Q 014219 329 CLAKAKIDRTAVD-DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 329 ~l~~~~~~~~~i~-~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~ 385 (428)
.+.... ++ .|+|+||.++++++.+.+++.+ +.++..+.+|..+.|.|||++
T Consensus 197 ~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 197 MLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 665543 34 7999999999999999999999 899999999999999999973
No 52
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.35 E-value=2.3e-10 Score=101.70 Aligned_cols=177 Identities=19% Similarity=0.177 Sum_probs=104.3
Q ss_pred eeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 014219 174 KIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEE 253 (428)
Q Consensus 174 ~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 253 (428)
..++|..|.+.+..+... +..-.|+||||.-+.+..+. .++.+.-......+.-|.-.|-+..++.|.-.
T Consensus 106 ~~v~EItaha~Ga~~~~p---------p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~ 175 (293)
T TIGR03192 106 KAITEIACHARGANYMGG---------NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDLMQIP 175 (293)
T ss_pred cceeeHHHHHHHHHHhcC---------CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHHcCCC
Confidence 457999998887765431 11238999999988876653 24444444455556666655656666655211
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHHHH-H--HhccCCceeEEE---eecccCcceeEEeeHHHHHHHHHHHHHHHHHHHH
Q 014219 254 FKRKNKIDISGNARALHRLRIACESAK-R--TLSSTIQTSIEI---DYLYEGINFSSTITRARFEQLNMDLFEKCIEHVD 327 (428)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~e~~K-~--~l~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~ 327 (428)
...+..+ +.+.+ . .+++.......- ..+..| .++ ++++..+.+.+...+.
T Consensus 176 ------------leel~~~---a~~~~~~p~~Iss~CtVFAeSevi~l~~~G------~~~---edI~aGl~~sia~rv~ 231 (293)
T TIGR03192 176 ------------IADLGPR---SFDVETEPEAVSSICVVFAKSEALGLLKAG------YTK---NMVIAAYCQAMAERVV 231 (293)
T ss_pred ------------HHHHHHH---HHhcCCCCCCcCCcceEeccHhHHHHHHCC------CCH---HHHHHHHHHHHHHHHH
Confidence 1111111 11111 1 112111111000 001111 222 3345555566666565
Q ss_pred HHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcC-CCCChhhHHHhHHHHHHHHh
Q 014219 328 TCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLC-RHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 328 ~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~-~~~~p~~ava~Ga~~~~~~~ 389 (428)
..+.+.+.. ..|+|+||.++.+++++.+++.+ +.++. .+.+|+.+-|.|||++|...
T Consensus 232 ~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 232 SLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred HHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHHH
Confidence 555554332 47999999999999999999999 77776 68899999999999999653
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.25 E-value=7.8e-10 Score=102.21 Aligned_cols=175 Identities=18% Similarity=0.133 Sum_probs=101.1
Q ss_pred eechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 014219 175 IIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEF 254 (428)
Q Consensus 175 ~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~ 254 (428)
.++|-.|.+.++.+-... .++.-.|+||||.-+.+..+ .++.+.-....+.+.-|+-.+-+.+++.|.-.+
T Consensus 221 iv~EItaha~GA~~L~p~-------~~~v~TIIDIGGQDsK~I~l--~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~i 291 (404)
T TIGR03286 221 IQEELTVNSKGAVYLADK-------QEGPATVIDIGGMDNKAISV--WDGIPDNFTMGGICAGASGRFLEMTAKRLGVDI 291 (404)
T ss_pred eEEEEhhHHHHHHHhccc-------CCCCcEEEEeCCCceEEEEE--cCCceeeEEEcCcccccCcHHHHHHHHHhCCCH
Confidence 468888877665444321 12345999999977765444 466655555666566555555556655552111
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHHHH---HHhccCCceeEE---EeecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHH
Q 014219 255 KRKNKIDISGNARALHRLRIACESAK---RTLSSTIQTSIE---IDYLYEGINFSSTITRARFEQLNMDLFEKCIEHVDT 328 (428)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~e~~K---~~l~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~ 328 (428)
. .|-..+.+.+ ..+++....... +..... ..++ ++++.-+...+.+.+..
T Consensus 292 ------------e---El~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~------G~~~---eDIaAGl~~SIa~rv~~ 347 (404)
T TIGR03286 292 ------------T---ELGKLALKGMPEKVRMNSYCIVFGIQDLVTALAE------GASP---EDVAAAACHSVAEQVYE 347 (404)
T ss_pred ------------H---HHHHHHHhCCCCCCCccCcccccccHhHHHHHHC------CCCH---HHHHHHHHHHHHHHHHH
Confidence 1 1111111111 111111110000 000011 1222 33444555555555543
Q ss_pred -HHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHH
Q 014219 329 -CLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 329 -~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
++++.+.. +.|+++||.++++.+.+.+++.+ +.++..|++|+.+-|.|||+++.
T Consensus 348 ~l~~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 348 QQLQEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHhhcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 34443322 47999999999999999999999 88999999999999999999984
No 54
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=99.18 E-value=6.9e-11 Score=108.44 Aligned_cols=234 Identities=19% Similarity=0.207 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCce
Q 014219 124 SMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVK 202 (428)
Q Consensus 124 ~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~ 202 (428)
..+..|+...- .....+...+++|-|+.|....|+.|.+ .++..+.+.+.+ .. .|.. |... ..
T Consensus 82 e~iw~~if~~~-L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv-a~-qavl--ya~g-----------~t 145 (372)
T KOG0676|consen 82 EKIWHHLFYSE-LLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV-AI-QAVL--YASG-----------RT 145 (372)
T ss_pred HHHHHHHHHHh-hccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH-HH-HHHH--HHcC-----------Ce
Confidence 55555555221 1122334589999999999999999987 555567777666 22 3323 2222 22
Q ss_pred EEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 014219 203 NVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRT 282 (428)
Q Consensus 203 ~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ 282 (428)
+-+|||+|.|-|++.-+.- +.. ....-....+||.++++.+...|.++ .+. ...... .+-.+.+|++
T Consensus 146 tG~VvD~G~gvt~~vPI~e--G~~-lp~ai~~ldl~G~dlt~~l~~~L~~~---g~s--~~~~~~-----~eIv~diKek 212 (372)
T KOG0676|consen 146 TGLVVDSGDGVTHVVPIYE--GYA-LPHAILRLDLAGRDLTDYLLKQLRKR---GYS--FTTSAE-----FEIVRDIKEK 212 (372)
T ss_pred eEEEEEcCCCceeeeeccc--ccc-cchhhheecccchhhHHHHHHHHHhc---ccc--cccccH-----HHHHHHhHhh
Confidence 3599999999887764442 211 11123347999999999888777651 111 110000 1224445555
Q ss_pred hccCC---ce---------eEEEee-cccCcceeEEeeHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCCC--CC
Q 014219 283 LSSTI---QT---------SIEIDY-LYEGINFSSTITRARFE---QLNMDL-----FEKCIEHVDTCLAKAKIDR--TA 339 (428)
Q Consensus 283 l~~~~---~~---------~~~~~~-~~~~~~~~~~i~~~~~~---~~~~~~-----i~~i~~~i~~~l~~~~~~~--~~ 339 (428)
++-.. .. ...... +.+|.. +.+.-+.|. -.|.|- ...|.+.+-..+.++..+. .-
T Consensus 213 lCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L 290 (372)
T KOG0676|consen 213 LCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDL 290 (372)
T ss_pred hcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHH
Confidence 43111 00 011110 123322 444433322 223332 2455566666666654443 23
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcC----C---CCcCCCCChhhHHHhHHHHHHHH
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFL----G---KNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~----~---~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
..+|+|+||++..|+|.+++++.+. + .++..+++...++..|+.+.|..
T Consensus 291 ~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlasl 346 (372)
T KOG0676|consen 291 YENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASL 346 (372)
T ss_pred HhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeec
Confidence 4799999999999999999999873 1 24666666667888888887754
No 55
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=99.14 E-value=6.6e-09 Score=91.27 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=98.6
Q ss_pred echhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 014219 176 IAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFK 255 (428)
Q Consensus 176 ~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~ 255 (428)
++|..|.+.++.+... +.-.|+||||.-+.+..+. .++.+.-......+.-|.-.|-+.+++.|.-.
T Consensus 81 vtEIt~ha~GA~~~~p----------~~~tIiDIGGQD~K~I~~~-~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i~-- 147 (262)
T TIGR02261 81 FYSMTTHARGAIYLNP----------EARAVLDIGALHGRAIRMD-ERGKVEAYKMTSQCASGSGQFLENIARYLGIA-- 147 (262)
T ss_pred eeEEeHHHHHHHHHCC----------CCCEEEEeCCCceEEEEEc-CCCcEeeEEecCcccccccHHHHHHHHHhCCC--
Confidence 4677777777654432 2238999999988875442 24555444455556656555556665555211
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHHHHHH--hccCCceeEEEe---ecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q 014219 256 RKNKIDISGNARALHRLRIACESAKRT--LSSTIQTSIEID---YLYEGINFSSTITRARFEQLNMDLFEKCIEHVDTCL 330 (428)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~e~~K~~--l~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l 330 (428)
...+.. .+.+.+.. +++.......-+ .+..| .++ ++++.-+.+.+...+...+
T Consensus 148 ----------leel~~---~a~~~~~~~~iss~CtVFaeSevi~~~~~G------~~~---edI~aGl~~sia~r~~~~~ 205 (262)
T TIGR02261 148 ----------QDEIGS---LSQQADNPEKVSGICAVLAETDVINMVSRG------ISA---PNILKGIHESMADRLAKLL 205 (262)
T ss_pred ----------HHHHHH---HHhcCCCCCCcCCCceEEchhhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHH
Confidence 111111 11112111 111111111000 01111 222 3445556666666665566
Q ss_pred HHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCC----CcCCCCChhhHHHhHHHHHH
Q 014219 331 AKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGK----NLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 331 ~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~----~v~~~~~p~~ava~Ga~~~~ 386 (428)
++.+.. -..|+|+||.++.+++++.+++.+++. .+..+++|+.+-|.|||+++
T Consensus 206 ~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 206 KSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred hccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 654322 136999999999999999999988432 36668899999999999974
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=99.13 E-value=1.7e-08 Score=91.14 Aligned_cols=171 Identities=20% Similarity=0.226 Sum_probs=105.9
Q ss_pred eeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 014219 174 KIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEE 253 (428)
Q Consensus 174 ~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 253 (428)
..+.|-.|-+.++.+-... .+ .|+||||.-+.+..++ ++.+.-.....-+.-|.-.+-+.+++.|.-.
T Consensus 211 ~~~~Ei~ah~kgA~~f~p~--------~d--tIiDIGGQD~K~i~i~--dG~v~df~mN~~CAAGtGrFLE~~A~~Lgv~ 278 (396)
T COG1924 211 KVVVEISAHAKGARYFAPD--------VD--TVIDIGGQDSKVIKLE--DGKVDDFTMNDKCAAGTGRFLEVIARRLGVD 278 (396)
T ss_pred cceeeeehhHHHHHHhCCC--------Cc--EEEEecCcceeEEEEe--CCeeeeeEeccccccccchHHHHHHHHhCCC
Confidence 3446666666655444332 11 8999999877776665 7766655566555555555666665555211
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEeeHH----------HHHHHHHHHHHHHH
Q 014219 254 FKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRA----------RFEQLNMDLFEKCI 323 (428)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~~~i~~i~ 323 (428)
+ ++. .|..+.......+.- .-..+..+ ..|+++.-+...+.
T Consensus 279 v-------------------~E~--~~~A~~~~~~v~i~S--------~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~ 329 (396)
T COG1924 279 V-------------------EEL--GKLALKATPPVKINS--------RCAVFAESEVISALAEGASPEDILAGLAYSVA 329 (396)
T ss_pred H-------------------HHH--HHHHhcCCCCcccCC--------eeEEEehHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 111 122222222111110 01111112 23556666666666
Q ss_pred HHHHH-HHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhc
Q 014219 324 EHVDT-CLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILS 390 (428)
Q Consensus 324 ~~i~~-~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~ 390 (428)
..+.. ++++.... +.|+|+||.+....+.+++...+ +.+|.+|++|+..-|.|||+++....
T Consensus 330 ~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~~ 392 (396)
T COG1924 330 ENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEVY 392 (396)
T ss_pred HHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhhh
Confidence 66555 55554333 24999999999999999999999 89999999999999999999997643
No 57
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=99.10 E-value=1.8e-09 Score=91.54 Aligned_cols=228 Identities=17% Similarity=0.184 Sum_probs=145.3
Q ss_pred CccCeEEEEeCCCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEE
Q 014219 140 TAVTNAVITVPAYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSL 218 (428)
Q Consensus 140 ~~~~~~vitvP~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~ 218 (428)
.+..++.+|-|.--....|+.|-+ .++..||..+++.-.++-+.++.+... -+|||-|.|-|.++-
T Consensus 99 p~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t-------------GvVvDSGDGVTHi~P 165 (389)
T KOG0677|consen 99 PTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT-------------GVVVDSGDGVTHIVP 165 (389)
T ss_pred CccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc-------------eEEEecCCCeeEEee
Confidence 345589999999888888887766 778889999998888777777655433 389999999999985
Q ss_pred EEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCC-----------
Q 014219 219 LAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTI----------- 287 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~----------- 287 (428)
+..+ ..+.. ..+...+.|+++++-++.++..+= +....+. =.+..+++|++|.-..
T Consensus 166 Vye~-~~l~H--LtrRldvAGRdiTryLi~LLl~rG---YafN~tA-------DFETVR~iKEKLCYisYd~e~e~kLal 232 (389)
T KOG0677|consen 166 VYEG-FVLPH--LTRRLDVAGRDITRYLIKLLLRRG---YAFNHTA-------DFETVREIKEKLCYISYDLELEQKLAL 232 (389)
T ss_pred eecc-eehhh--hhhhccccchhHHHHHHHHHHhhc---ccccccc-------chHHHHHHHhhheeEeechhhhhHhhh
Confidence 5421 11111 233478999999999999987542 1111111 0355666677654111
Q ss_pred ceeEEEe--ecccCcceeEEeeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHH
Q 014219 288 QTSIEID--YLYEGINFSSTITRARFE---QLNMDLF-----EKCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKL 355 (428)
Q Consensus 288 ~~~~~~~--~~~~~~~~~~~i~~~~~~---~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l 355 (428)
++.+-++ .+.+| ..+.+..+.|+ .+|.|.+ ..+.+++-..++.+..+. .--.+|+|+||++--|++
T Consensus 233 ETTvLv~~YtLPDG--RvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGL 310 (389)
T KOG0677|consen 233 ETTVLVESYTLPDG--RVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGL 310 (389)
T ss_pred hheeeeeeeecCCC--cEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCC
Confidence 1111111 12233 23455555554 4566643 346677777777765543 223799999999999999
Q ss_pred HHHHHhhcC---------C---------CCcCCCCChhhHHHhHHHHHHHHhcCCCCC
Q 014219 356 QQLLQDFFL---------G---------KNLCRHINADEAVATGAAIQAAILSGVCSD 395 (428)
Q Consensus 356 ~~~l~~~~~---------~---------~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~ 395 (428)
-.++++.++ + .++--|+.-...|-.|-|.+|..+.+++.|
T Consensus 311 PSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~f 368 (389)
T KOG0677|consen 311 PSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEF 368 (389)
T ss_pred cHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccc
Confidence 888877662 1 123344444567778888888888876543
No 58
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.92 E-value=1.6e-08 Score=94.95 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=58.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHH------------cCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecC
Q 014219 144 NAVITVPAYFSDSQRQATEDAATQ------------CGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGG 211 (428)
Q Consensus 144 ~~vitvP~~~~~~~~~~l~~a~~~------------ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~ 211 (428)
..++|-++. .++.+++++++ ||++.-.++. |.|++.+.+.. +. ...+++|||||
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-Ek--------e~gVa~IDIGg 155 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-ER--------NTRVLNIDIGG 155 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-hc--------cCceEEEEeCC
Confidence 456665544 35566777776 4444333344 99999988854 33 77899999999
Q ss_pred cceEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 014219 212 GTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNR 245 (428)
Q Consensus 212 ~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~ 245 (428)
|||++++++ ++.+. +.+..++||++++..
T Consensus 156 GTT~iaVf~--~G~l~---~T~~l~vGG~~IT~D 184 (475)
T PRK10719 156 GTANYALFD--AGKVI---DTACLNVGGRLIETD 184 (475)
T ss_pred CceEEEEEE--CCEEE---EEEEEecccceEEEC
Confidence 999999999 44332 555689999887754
No 59
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.85 E-value=8.3e-08 Score=82.87 Aligned_cols=193 Identities=20% Similarity=0.186 Sum_probs=113.6
Q ss_pred HHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 014219 164 AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFN 243 (428)
Q Consensus 164 a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id 243 (428)
.-+..|.+...-=.|+.+|.+.++..... +....++|+|+|+||.+++...+.. ..++ ..-.|+.++
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPGt--------~~PlaIlDmG~GSTDAsii~~~g~v-~~iH----lAGAG~mVT 170 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPGT--------DKPLAILDMGGGSTDASIINRDGEV-TAIH----LAGAGNMVT 170 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT----------SSEEEEEE-SSEEEEEEE-TTS-E-EEEE----EE-SHHHHH
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCCC--------CCCeEEEecCCCcccHHHhCCCCcE-EEEE----ecCCchhhH
Confidence 34455887777778999999999988876 7778999999999999999754433 2222 344688888
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccC---------CceeEE-Eee------------cccCc-
Q 014219 244 NRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSST---------IQTSIE-IDY------------LYEGI- 300 (428)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~---------~~~~~~-~~~------------~~~~~- 300 (428)
..+...|-- . + +.-+|.+|+---.. ....+. ++. +.++.
T Consensus 171 mlI~sELGl----~---d-----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~l 232 (332)
T PF08841_consen 171 MLINSELGL----E---D-----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGL 232 (332)
T ss_dssp HHHHHHCT-----S---------------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEE
T ss_pred HHHHHhhCC----C---C-----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCce
Confidence 888555411 0 0 36677777641100 000000 000 00110
Q ss_pred -ceeEEeeHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcCC-------CCcC
Q 014219 301 -NFSSTITRARFEQLNMDLFEKC-IEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFLG-------KNLC 369 (428)
Q Consensus 301 -~~~~~i~~~~~~~~~~~~i~~i-~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~~-------~~v~ 369 (428)
.+...++-+.+..+=+..-+++ ..-..++|++..+.. .+++.|+|+||++.---+-+.+.+.+.. -+++
T Consensus 233 vPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIr 312 (332)
T PF08841_consen 233 VPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIR 312 (332)
T ss_dssp EEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GG
T ss_pred eecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccc
Confidence 1112333344444333333332 234556666654433 6789999999999988888888888842 2678
Q ss_pred CCCChhhHHHhHHHHHHH
Q 014219 370 RHINADEAVATGAAIQAA 387 (428)
Q Consensus 370 ~~~~p~~ava~Ga~~~~~ 387 (428)
-..-|..|||.|+++.-+
T Consensus 313 G~eGPRNAVATGLvlsy~ 330 (332)
T PF08841_consen 313 GVEGPRNAVATGLVLSYA 330 (332)
T ss_dssp GTSTTSTHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHhhc
Confidence 889999999999998643
No 60
>PRK13317 pantothenate kinase; Provisional
Probab=98.74 E-value=2.7e-06 Score=76.61 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=43.5
Q ss_pred CCeEEEEc-CCcCcHHHHHHHHhhcC--CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 340 VDDVVIVG-GSSRIPKLQQLLQDFFL--GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 340 i~~Vvl~G-G~s~~~~l~~~l~~~~~--~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|+++.|.||++++..
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~~ 274 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLATN 274 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhhh
Confidence 46899999 79999999999999884 578888999999999999998853
No 61
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=98.72 E-value=8.4e-06 Score=78.50 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=56.7
Q ss_pred eEEeeHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCC---C----------
Q 014219 303 SSTITRARFEQLNMDL---FEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLG---K---------- 366 (428)
Q Consensus 303 ~~~i~~~~~~~~~~~~---i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~---~---------- 366 (428)
.+.|.-.++.+.+-.- +......+-+++.. .+.|.++|+|--+++|+++..++...|- +
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 3455556666554332 34444445555554 3457899999999999999999988741 1
Q ss_pred ------CcCCCCChhhHHHhHHHHHHHHh
Q 014219 367 ------NLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 367 ------~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
+--+.+||..++|.||.+.+..+
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 12367799999999999887664
No 62
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=98.70 E-value=5.3e-07 Score=79.25 Aligned_cols=240 Identities=14% Similarity=0.090 Sum_probs=120.8
Q ss_pred cCeEEEEeCCCCCHH-HHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEE
Q 014219 142 VTNAVITVPAYFSDS-QRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLA 220 (428)
Q Consensus 142 ~~~~vitvP~~~~~~-~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~ 220 (428)
...+++|-|..--+. +.....-.++..+++.+.-.+-+.-++.. ....++.......+...+|||-|.+-|.+.-+.
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~--~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFT--KYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchh--hhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 357899999654444 33344557777788876654433333333 122222222224577899999999999988555
Q ss_pred EeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCC-CCCCHHHH-----HHHHHHHHHHHHHhccC-CceeEEE
Q 014219 221 IENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKID-ISGNARAL-----HRLRIACESAKRTLSST-IQTSIEI 293 (428)
Q Consensus 221 ~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~-~~~~~~~~-----~~l~~~~e~~K~~l~~~-~~~~~~~ 293 (428)
.+. ....+..+ ..+||..++..|.+++.=+--+--... +-...++- ..+.+..+.+|.+...+ ......+
T Consensus 171 ~g~--~~~qaV~R-iDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvL 247 (400)
T KOG0680|consen 171 KGI--PYYQAVKR-IDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVL 247 (400)
T ss_pred cCc--chhhceEE-eecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEec
Confidence 332 22222333 799999999999988852211100000 00000000 11222233333332111 0111111
Q ss_pred eec--------------ccCcceeEEeeHHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCC--CCCCCeEEEEcCC
Q 014219 294 DYL--------------YEGINFSSTITRARFE---QLNMDLFE-----KCIEHVDTCLAKAKID--RTAVDDVVIVGGS 349 (428)
Q Consensus 294 ~~~--------------~~~~~~~~~i~~~~~~---~~~~~~i~-----~i~~~i~~~l~~~~~~--~~~i~~Vvl~GG~ 349 (428)
+.+ .......+.++-+.|. -+|.|.-- .|.+++.+.+..+... +.-+..|+++||.
T Consensus 248 PDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn 327 (400)
T KOG0680|consen 248 PDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGN 327 (400)
T ss_pred CCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCc
Confidence 110 0111122334333332 22333211 1233333333332111 1123589999999
Q ss_pred cCcHHHHHHHHhhc----C---CCCcCCCCChhhHHHhHHHHHH
Q 014219 350 SRIPKLQQLLQDFF----L---GKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 350 s~~~~l~~~l~~~~----~---~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
|+.|+++++|.+.+ | ++.|..|.||..-...|....+
T Consensus 328 ~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~ 371 (400)
T KOG0680|consen 328 SNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFA 371 (400)
T ss_pred cCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccc
Confidence 99999999998877 3 4578889999876666554443
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.51 E-value=3e-06 Score=77.87 Aligned_cols=175 Identities=14% Similarity=0.098 Sum_probs=104.2
Q ss_pred eeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 014219 174 KIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEE 253 (428)
Q Consensus 174 ~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 253 (428)
.+++|..|.+.++.+.... .-.|+||||..+.+..+.- ++.+.-......+.-|.-.+-+.+++.|.-.
T Consensus 249 ~vitEItcHA~GA~~l~P~----------vrTIIDIGGQDsK~I~ld~-~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi~ 317 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYPG----------TRTVLDIGGQDTKGIQIDD-HGIVENFQMNDRCAAGCGRYLGYIADEMNMG 317 (432)
T ss_pred ceeeeHHHHHHHHHHHCCC----------CCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccchHHHHHHHHHcCCC
Confidence 3558888888887655422 2389999999888754432 3444444456556666666666666555211
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEe-----ecccCcceeEEeeHHHHHHHHHHHHHHHHHHHHH
Q 014219 254 FKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEID-----YLYEGINFSSTITRARFEQLNMDLFEKCIEHVDT 328 (428)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~ 328 (428)
...+. ..+.+.+....-.....+--+ .+..| .++ ++++.-+.+.+...+..
T Consensus 318 ------------leEl~---~lA~~a~~pv~ISS~CtVFAESEVIslla~G------~~r---eDIaAGL~~SIA~Rv~s 373 (432)
T TIGR02259 318 ------------LHELG---PLAMKSSKPARINSTCTVFAGAELRDRLALG------DKR---EDILAGLHRAIILRAIS 373 (432)
T ss_pred ------------HHHHH---HHHhcCCCCCCcCCcceEEehHHHHHHHHCC------CCH---HHHHHHHHHHHHHHHHH
Confidence 11111 112222211111111111111 01111 122 34455566666666666
Q ss_pred HHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC----CCCcCCCCChhhHHHhHHHHHH
Q 014219 329 CLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL----GKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 329 ~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~----~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
.+.+... .-..|+|+||.++.+++.+.+++.++ +.++..+++|+.+-|.|||+++
T Consensus 374 ~l~r~~~---i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 374 IISRSGG---ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHhcccC---CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 6665421 12479999999999999999999994 4678899999999999999975
No 64
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.32 E-value=0.00065 Score=61.76 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhc----CCCCcCCCCChhhHHHhHHHHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFF----LGKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~----~~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
.++++...+.+.+.+...+.+..... ..|+|+||..+...+++.+++.+ +..++..+..|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~---~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEK---EPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCC---CSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC---CeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 45667777777788888877765432 12999999999977777774444 35567788899999999999986
No 65
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=98.18 E-value=2.3e-05 Score=73.34 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=85.2
Q ss_pred EEeHHHHHHHHHHHHHHHH-HHHcCCcc-----CeEEEEeCCCCCHHHHHHH-HHHHHHcCCceEeeechhHHHHHHhhc
Q 014219 116 QVAAEEISSMVLKKKREIA-EAFVGTAV-----TNAVITVPAYFSDSQRQAT-EDAATQCGLQVLKIIAEPTAAAIAYGL 188 (428)
Q Consensus 116 ~~~~~~l~~~~l~~l~~~~-~~~~~~~~-----~~~vitvP~~~~~~~~~~l-~~a~~~ag~~~v~~~~E~~Aaa~~~~~ 188 (428)
..+..+++.+. ..+++.+ ...++-+. -.+++.||..|...+.+.+ +-.+...||..+.++.|+.|+.++++.
T Consensus 196 y~Slq~l~~dl-t~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 196 YYSLQRLCEDL-TAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred chhHHHHHHHH-HHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34566666663 3344444 33343332 2689999999998876655 557788899999999999999999886
Q ss_pred cccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHH
Q 014219 189 DRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFV 251 (428)
Q Consensus 189 ~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 251 (428)
.. .+|||||+.+|.++.++-+-... ...-....||++|++.|.-+++
T Consensus 275 ss-------------~CVVdiGAQkTsIaCVEdGvs~~---ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 SS-------------ACVVDIGAQKTSIACVEDGVSLP---NTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred cc-------------eeEEEccCcceeEEEeecCcccc---CceEEeccCCchHHHHHHHHHH
Confidence 63 49999999999999887432211 1122268899999999987665
No 66
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=98.11 E-value=0.001 Score=63.10 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCCC-CCCCeEEEEcCCcCc----HHHHHHHHhhc-----CCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 320 EKCIEHVDTCLAKAKIDR-TAVDDVVIVGGSSRI----PKLQQLLQDFF-----LGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 320 ~~i~~~i~~~l~~~~~~~-~~i~~Vvl~GG~s~~----~~l~~~l~~~~-----~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
+++.+.+++.+....... .+.-.+.|.|...-+ .-+.+.|.+.+ ++.+++.....+.+=+.|-++.+..-
T Consensus 353 ~~l~~~i~~~l~~~~~~~~~~~~Alal~g~~~~~f~~iq~lA~~i~~~~~~~~~~~~Plivv~e~D~aKvLGq~l~~~l~ 432 (473)
T PF06277_consen 353 EELAEAIREALEWFDLEGEDQPVALALPGKPNPSFAEIQELAEAIAEGMAELINPDQPLIVVVEQDMAKVLGQTLQALLP 432 (473)
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEECchHHHHHHHHHHHhcC
Confidence 566666777777654432 233466666664322 22233333333 24567777788999999999998766
Q ss_pred cCCCCCcCcceEEeecccceeeeEEcCCcccEEEeC
Q 014219 390 SGVCSDKAEDLVILDLKPCSHEPKIATGSNPSLLIC 425 (428)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (428)
.+.+--=++.+.+.+--.-.||--..+|+.+|++-|
T Consensus 433 ~~~~licID~I~v~~GDYIDIG~Pl~~G~VvPVvvK 468 (473)
T PF06277_consen 433 KKRPLICIDQIKVENGDYIDIGKPLAGGSVVPVVVK 468 (473)
T ss_pred CCCCEEEEeeEEcCCCCeEecCCccCCCCEeeEEEE
Confidence 552222223333333444455666677777777655
No 67
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=98.11 E-value=0.0023 Score=57.51 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCCCeEEEEcC-CcCcHHHHHHHHhhcC--CCCcCCCCChhhHHHhHHHH
Q 014219 338 TAVDDVVIVGG-SSRIPKLQQLLQDFFL--GKNLCRHINADEAVATGAAI 384 (428)
Q Consensus 338 ~~i~~Vvl~GG-~s~~~~l~~~l~~~~~--~~~v~~~~~p~~ava~Ga~~ 384 (428)
..+..|+++|| ....|.+++.+...+. +.++..+.++.+..|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34679999999 7788999999988773 56788999999999999986
No 68
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=98.04 E-value=6.5e-05 Score=70.98 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=76.5
Q ss_pred eHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHH-HHHHcCCceEeeechhHHHHHHhhccccccCCc
Q 014219 118 AAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATED-AATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGI 196 (428)
Q Consensus 118 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~-a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~ 196 (428)
+.-++....|.|+..+..-.-+.-...+++|-+..-....|+.|.+ .++..|++.|.+=-.+.=+.++ ....
T Consensus 92 tNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h---N~~~---- 164 (645)
T KOG0681|consen 92 TNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH---NYGK---- 164 (645)
T ss_pred ccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh---ccCc----
Confidence 4444555555555543322111113468999998888888988877 5666799987764443322221 1111
Q ss_pred cccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 014219 197 AASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEE 253 (428)
Q Consensus 197 ~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 253 (428)
......++|++|..+|.|-.+.-+... ...... .++||.+...-|.+++..+
T Consensus 165 --~~~~~~liis~g~~~T~vipvldG~~i--l~~~kR-iN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 165 --SSNKSGLIISMGHSATHVIPVLDGRLI--LKDVKR-INWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred --ccCcceEEEecCCCcceeEEEecCchh--hhccee-eccCcchHHHHHHHHHhcc
Confidence 113367999999999999887744332 222333 8999988877777776643
No 69
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.72 E-value=0.0038 Score=59.32 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=43.4
Q ss_pred CcceeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHh
Q 014219 299 GINFSSTITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQD 361 (428)
Q Consensus 299 ~~~~~~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~ 361 (428)
+....+.+|.+|+++ +.-.-..|..-+.-.+++++.+..+++.|+|.||+++---..+.+.=
T Consensus 288 ~~~~~i~itq~DIr~-~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~i 349 (412)
T PF14574_consen 288 DIGDDIYITQKDIRE-FQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRI 349 (412)
T ss_dssp SSSS-EEEEHHHHHH-HHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHT
T ss_pred CCCCCEEEeHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhc
Confidence 344568999999976 44455677788889999999999999999999999986555665544
No 70
>PF13941 MutL: MutL protein
Probab=97.35 E-value=0.00098 Score=63.88 Aligned_cols=41 Identities=24% Similarity=0.568 Sum_probs=29.9
Q ss_pred EEEEeccCceEEEEEEe--CCeeEEEecCCCCcccceEEEEeCCceEec
Q 014219 8 AIGIDLGTTYSCVAVWQ--HDKVEIIPNDQGNRTTPSYVAFTDTESFVG 54 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~--~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G 54 (428)
++.+|||||+|++...+ .+..+++ +....||.+ .++....|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~~Dv~~G 44 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EPGDVTIG 44 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--CcccHHHH
Confidence 68999999999999997 7777777 334567766 22344555
No 71
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.30 E-value=0.00047 Score=59.47 Aligned_cols=74 Identities=26% Similarity=0.357 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHH
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKID-RTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~-~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
+++.-+++.+.-.+...++..... ...++.|+++||+++++.+.+.+...+ +.+|..+.+ .++.|.|||+.|+.
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 334444444444443333332111 134789999999999999999999999 898888866 88999999999874
No 72
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=97.27 E-value=0.003 Score=49.43 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=36.0
Q ss_pred EEEEEecCcceEEEEEEEeC-CeEEEEEecCCCCcc--------hHHHH--HHHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 014219 204 VLIFDLGGGTFDVSLLAIEN-GVIRVRATDGNTRLG--------GVDFN--NRMVDYFVEEFKRKNKIDISGNARALHRL 272 (428)
Q Consensus 204 ~lvvDiG~~t~d~~~~~~~~-~~~~~~~~~~~~~~G--------g~~id--~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 272 (428)
++++|+|++++.+++++... +.++. ..+| +..|+ +.+.+.+..-
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~v------l~~g~~~s~gi~~g~Itd~~~i~~~i~~a------------------- 55 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRV------LGVGEVPSKGIKGGHITDIEDISKAIKIA------------------- 55 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEE------ES----------HHHHH--HHHHHHHT---------------------
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEE------EEEecccccccCCCEEEEHHHHHHHHHHH-------------------
Confidence 58999999999999998532 22222 4555 78888 7777666433
Q ss_pred HHHHHHH-HHHhc
Q 014219 273 RIACESA-KRTLS 284 (428)
Q Consensus 273 ~~~~e~~-K~~l~ 284 (428)
.+++|+. |..+.
T Consensus 56 ~~~AE~~~k~~i~ 68 (120)
T PF14450_consen 56 IEEAERLAKCEIG 68 (120)
T ss_dssp HHHHHHH-HHHH-
T ss_pred HHHHHHHhCCeee
Confidence 3677777 77765
No 73
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.026 Score=55.10 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEE
Q 014219 157 QRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAI 221 (428)
Q Consensus 157 ~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~ 221 (428)
..+.+..+-+..|++.-.+-.|-+|-..+.+.....+ .....+|+|+|||+|.++....
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~------~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP------RKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC------CCCCEEEEEecCCeEEEEEecC
Confidence 3556777777789887555556666555544433321 1566899999999999998873
No 74
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.09 E-value=0.013 Score=57.91 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCC
Q 014219 157 QRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTR 236 (428)
Q Consensus 157 ~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~ 236 (428)
..+.+.++-+..|++.-.+-.|-+|-..+.+..... + ..+..+|+|||||+|.+++++-+. +. ...+.+
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l----~--~~~~~lviDIGGGStEl~~~~~~~--~~---~~~Sl~ 161 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTT----G--GADQRLVVDIGGASTELVTGTGAQ--AT---SLFSLS 161 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhcc----C--CCCCEEEEEecCCeeeEEEecCCc--ee---eeeEEe
Confidence 344556666777987744444444444433332221 1 123589999999999999987332 22 333478
Q ss_pred cchHHHHHHH
Q 014219 237 LGGVDFNNRM 246 (428)
Q Consensus 237 ~Gg~~id~~l 246 (428)
+|.-.+.+.+
T Consensus 162 lG~vrl~e~f 171 (496)
T PRK11031 162 MGCVTWLERY 171 (496)
T ss_pred ccchHHHHHh
Confidence 8887776665
No 75
>PRK00976 hypothetical protein; Provisional
Probab=97.09 E-value=0.23 Score=45.55 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcH--HHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIP--KLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~--~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
+++...+.+...+...+.-. +++.|+|.||.|+.+ .+.+.+++.+ ..+ ....-..+.++|||+.+....+
T Consensus 243 aid~~~~~LA~~IAnLi~ll-----DPe~IVLGGGVS~~~e~~L~~~I~e~l-~~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 243 AIDTLALFVAMEIASLLLLN-----PEDNVVLAGSVGEMDEPDVSERIKELL-DKK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCEEEEcCccccCchhHHHHHHHHHh-ccc--ccccCCchHHHHHHHHHHHHhC
Confidence 33444444444444444432 467999999999987 7999999988 333 2223347899999999887744
No 76
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.78 E-value=0.006 Score=61.25 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=63.3
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHH
Q 014219 306 ITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 306 i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~ 385 (428)
-++.++..+++-+++.|.-.+...++........++.|.++||+++++...+.+...+ +.+|.++.+++ +.|+|||+.
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~e-~~alGaA~l 487 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVNE-AVLHGAAML 487 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChhH-HHHHHHHHH
Confidence 3455566666666666665555555543222234789999999999999999999999 89998886665 679999999
Q ss_pred HHHhcC
Q 014219 386 AAILSG 391 (428)
Q Consensus 386 ~~~~~~ 391 (428)
|+.-.|
T Consensus 488 A~~~~G 493 (541)
T TIGR01315 488 GAKAAG 493 (541)
T ss_pred HHHhcC
Confidence 988776
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=96.77 E-value=0.0028 Score=57.97 Aligned_cols=71 Identities=18% Similarity=0.095 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHH
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
.+++-..+++.+.|.+.....+..+.+ -.++..||.+ |++...+.+.++-..+..+..|.-+.|.|+++..
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a~ 285 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVAD 285 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 334444555555565554444444322 2455566666 6888899998833356667778999999998643
No 78
>PRK10854 exopolyphosphatase; Provisional
Probab=96.74 E-value=0.026 Score=56.17 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCceEeeechhHHHHHHhh-ccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCC
Q 014219 158 RQATEDAATQCGLQVLKIIAEPTAAAIAYG-LDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTR 236 (428)
Q Consensus 158 ~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~-~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~ 236 (428)
.+.+.++-+..|++. .+++..+=|.+.|. ..... . ..++.+|+|||||+|.+++++-+... . ..+.+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l----~--~~~~~lvvDIGGGStEl~~~~~~~~~--~---~~S~~ 166 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQ----P--EKGRKLVIDIGGGSTELVIGENFEPI--L---VESRR 166 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhccc----C--CCCCeEEEEeCCCeEEEEEecCCCee--E---eEEEe
Confidence 444555666679877 55555444444443 22221 1 12468999999999999998743222 1 11246
Q ss_pred cchHHHHHHH
Q 014219 237 LGGVDFNNRM 246 (428)
Q Consensus 237 ~Gg~~id~~l 246 (428)
+|.-.+.+.+
T Consensus 167 lG~vrl~e~f 176 (513)
T PRK10854 167 MGCVSFAQLY 176 (513)
T ss_pred cceeeHHhhh
Confidence 6666666554
No 79
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.73 E-value=0.5 Score=44.00 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCc-HHHHHHHHhhcC---------CCCcCCCCChhhHHHhHHH
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRI-PKLQQLLQDFFL---------GKNLCRHINADEAVATGAA 383 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~-~~l~~~l~~~~~---------~~~v~~~~~p~~ava~Ga~ 383 (428)
+++...+.+...+...+.- -+++.|+|.|+.+.. +.+.+.+++.+. ..++........+.+.||+
T Consensus 231 i~~~~~~~L~~~i~~~~~~-----~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa 305 (318)
T TIGR00744 231 SYREVARWAGAGLADLASL-----FNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAA 305 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHH
Confidence 3444444444444444443 246789998887664 566666666552 1234445555678899999
Q ss_pred HHHHH
Q 014219 384 IQAAI 388 (428)
Q Consensus 384 ~~~~~ 388 (428)
..+..
T Consensus 306 ~~~~~ 310 (318)
T TIGR00744 306 DLART 310 (318)
T ss_pred HHHHH
Confidence 88653
No 80
>PRK13321 pantothenate kinase; Reviewed
Probab=96.71 E-value=0.1 Score=46.85 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.6
Q ss_pred eEEEEeccCceEEEEEEeCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~ 26 (428)
++++||+|+|+++++..+++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred CEEEEEECCCeEEEEEEECC
Confidence 36999999999999999855
No 81
>PRK15027 xylulokinase; Provisional
Probab=96.70 E-value=0.0051 Score=60.93 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHH
Q 014219 307 TRARFEQ-LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 307 ~~~~~~~-~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~ 385 (428)
++.++.. +++.+.-.+...+ +.+++.+ ..++.|+++||+++++...+.+...+ +.+|....+..++.|.|||++
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~-~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGM-DVVHACG---IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHH
Confidence 4555443 3333333333333 3334333 24689999999999999999999999 899977767777889999999
Q ss_pred HHHhcC
Q 014219 386 AAILSG 391 (428)
Q Consensus 386 ~~~~~~ 391 (428)
++.-.|
T Consensus 432 A~~~~G 437 (484)
T PRK15027 432 AQIAAN 437 (484)
T ss_pred HHHhcC
Confidence 998876
No 82
>PLN02669 xylulokinase
Probab=96.54 E-value=0.01 Score=59.67 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHH
Q 014219 315 NMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
++-+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+...| +.+|.+...+ ++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 3334444444444444443322 34789999999999999999999999 8888888776 5779999999977
No 83
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.46 E-value=0.036 Score=51.10 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcc
Q 014219 159 QATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLG 238 (428)
Q Consensus 159 ~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~G 238 (428)
..+..+-+..|++. .+++..+=|.+.|.--... .. ....+++|+|||+|.++.+.-+... ...+.++|
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~---~~---~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG 156 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHT---LP---IADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLG 156 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhC---CC---CCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccc
Confidence 33444555678866 5666665555555322111 01 1124999999999999988633221 33347888
Q ss_pred hHHHHHHH
Q 014219 239 GVDFNNRM 246 (428)
Q Consensus 239 g~~id~~l 246 (428)
...+.+.+
T Consensus 157 ~vrl~e~f 164 (300)
T TIGR03706 157 CVRLTEQF 164 (300)
T ss_pred eEEhHHhh
Confidence 88877775
No 84
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.44 E-value=0.063 Score=51.88 Aligned_cols=84 Identities=27% Similarity=0.342 Sum_probs=60.4
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHH
Q 014219 307 TRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 307 ~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
+.+.+..+..-.+.-+.--.+..++........|+.|+.+||..+.|.+.+...... ++++..+ ..+.+++.|+++.+
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~ 476 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFA 476 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHH
Confidence 344444555555555543333333332223356899999999999999999999999 8887777 66778999999999
Q ss_pred HHhcCC
Q 014219 387 AILSGV 392 (428)
Q Consensus 387 ~~~~~~ 392 (428)
+.-.+.
T Consensus 477 avAag~ 482 (544)
T COG1069 477 AVAAGV 482 (544)
T ss_pred HHHhcc
Confidence 887764
No 85
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=96.43 E-value=0.0027 Score=60.42 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCCC--CCCCeEEEEcCCcCcHHHHHHHHhhcC-------CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 321 KCIEHVDTCLAKAKIDR--TAVDDVVIVGGSSRIPKLQQLLQDFFL-------GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 321 ~i~~~i~~~l~~~~~~~--~~i~~Vvl~GG~s~~~~l~~~l~~~~~-------~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
.|.+.+...+.+...+- ..+.+|+||||.|.+|++.++|.+.+- ...|....||...+.+||+-+++.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 35555666666543222 227899999999999999999999882 357889999999999999999876
No 86
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=96.36 E-value=0.11 Score=46.81 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=63.7
Q ss_pred cCeEEEEeCCCCCHHHHHHHHHHH-HHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEE
Q 014219 142 VTNAVITVPAYFSDSQRQATEDAA-TQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLA 220 (428)
Q Consensus 142 ~~~~vitvP~~~~~~~~~~l~~a~-~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~ 220 (428)
.....+|.|..-+++.|+...+.+ +..+.+.+++.-.+.-|..+......- ....-.-+|+|-|.|-|.+..+.
T Consensus 106 dh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v-----~er~ltG~VidsGdgvThvipva 180 (415)
T KOG0678|consen 106 DHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQV-----GERFLTGIVIDSGDGVTHVIPVA 180 (415)
T ss_pred cceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhh-----hhheeeeEEEecCCCeeEEEEee
Confidence 446889999999999999888854 333445444444443333222221111 11244568999999999887665
Q ss_pred EeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 014219 221 IENGVIRVRATDGNTRLGGVDFNNRMVDYFVE 252 (428)
Q Consensus 221 ~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 252 (428)
++.+-. +.-.+.++.|++++.-+..++++
T Consensus 181 --EgyVig-Scik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 181 --EGYVIG-SCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred --cceEEe-eeeccccccCCchhHHHHHHhhC
Confidence 443222 22344899999998877766643
No 87
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.083 Score=51.32 Aligned_cols=74 Identities=28% Similarity=0.365 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCC
Q 014219 317 DLFEKCIEHVDTCLAKAKIDR-TAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGV 392 (428)
Q Consensus 317 ~~i~~i~~~i~~~l~~~~~~~-~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~ 392 (428)
-.++.|.-..++.++....+. ..++.+.+.||.|+.+.|.+.++..+ +.++..+.+.+. ++.|||++++...+.
T Consensus 391 A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 444444444444444333222 45788999999999999999999999 899999988888 999999999999884
No 88
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.30 E-value=0.015 Score=58.00 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +.+|.+...++ +.|.|||+.++.-.|
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~~~e-~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPEMAE-TTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHh-CCceEecCccc-chHHHHHHHHHhhcC
Confidence 3678999999999999999999999 89998776554 689999999998877
No 89
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.81 Score=41.29 Aligned_cols=185 Identities=12% Similarity=0.117 Sum_probs=94.1
Q ss_pred cCCc-eEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEE---ecCCCCcchHHHH
Q 014219 168 CGLQ-VLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRA---TDGNTRLGGVDFN 243 (428)
Q Consensus 168 ag~~-~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~---~~~~~~~Gg~~id 243 (428)
..+. .+.+..+...|..+....... +++=.|-||.-+.. .++.....+ ..-+...+|.+|=
T Consensus 94 l~~a~~v~v~~Dg~iAl~ga~~~~~G------------ii~i~GTGSi~~~~---~gg~~~r~GG~Gf~IgDegSga~ig 158 (301)
T COG2971 94 LPFAGKVDVENDGLIALRGALGDDDG------------IIVIAGTGSIGYGR---KGGRRERVGGWGFPIGDEGSGAWIG 158 (301)
T ss_pred cCccceEEEecChHHHHhhccCCCCC------------EEEEecCCeEEEEE---eCCeeEEecCcCccccccchHHHHH
Confidence 3454 788888888888877655544 56667877776665 233322221 1223466788888
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcce---eEEeeHHHHH------HH
Q 014219 244 NRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINF---SSTITRARFE------QL 314 (428)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~------~~ 314 (428)
+.+.+..+..+....... .-++++...|..+.+.- +.+.+....- --.++..-++ .+
T Consensus 159 ~~~L~~~lra~DG~~~~t------------~L~d~v~~~f~~d~edl--v~~~y~a~~~~~~ia~lap~V~~~A~~GD~~ 224 (301)
T COG2971 159 REALQEALRAFDGRREAT------------PLTDAVMAEFNLDPEDL--VAFIYKAGPGDKKIAALAPAVFEAARKGDPV 224 (301)
T ss_pred HHHHHHHHHHhcCCccCC------------hHHHHHHHHhCCCHHHH--HHHHHhcCCchHHHHHhhHHHHHHHHcCCHH
Confidence 888887766553222211 01112222222211100 0001110000 0011111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCc-HHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 315 NMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRI-PKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~-~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
.-.++++....+...++.... ......+.+.||..++ +++.+...+.+ .. +|..-+..||.+.+...
T Consensus 225 A~~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l-~~------~~~~D~~~GA~~~A~~~ 292 (301)
T COG2971 225 AIRILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRAL-LV------PPIGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHh-cC------CccccHHHHHHHHHHHh
Confidence 222344444555555554321 1234689999998877 88888888887 22 22555777888877554
No 90
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.26 E-value=0.015 Score=57.58 Aligned_cols=51 Identities=33% Similarity=0.541 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|+++||+++++.+.+.+...+ +.+|.... ..++.|+|||++++.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcC
Confidence 4689999999999999999999999 89888775 555789999999998877
No 91
>PRK13318 pantothenate kinase; Reviewed
Probab=96.24 E-value=0.35 Score=43.52 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=17.1
Q ss_pred EEEEeccCceEEEEEEeCC
Q 014219 8 AIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~ 26 (428)
+++||+|+|++++++.+++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 7899999999999999754
No 92
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.21 E-value=0.017 Score=57.44 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +.+|.....+ ++.|+|||+.++.-.|
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERPVVA-ETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEecCcc-cchHHHHHHHHhhhcC
Confidence 3679999999999999999999999 8999877655 5789999999998877
No 93
>PRK04123 ribulokinase; Provisional
Probab=96.17 E-value=0.015 Score=58.58 Aligned_cols=51 Identities=33% Similarity=0.518 Sum_probs=44.6
Q ss_pred CCCeEEEEcCC-cCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGS-SRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~-s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|+++||+ ++++.+.+.+...+ +.+|.+... .++.|.|||+.++.-.|
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~~-~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVAS-DQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEecCc-cccchHHHHHHHHHHhc
Confidence 46789999999 99999999999999 898877754 56779999999998766
No 94
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=96.17 E-value=0.07 Score=50.02 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=37.0
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCC----CChhhHHHhHHHHHHHHhc
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRH----INADEAVATGAAIQAAILS 390 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~----~~p~~ava~Ga~~~~~~~~ 390 (428)
.+.|+++||++..++|.++|++.++ .+|..+ .+++.--|..-|++|.+..
T Consensus 287 ~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~l 340 (365)
T PRK09585 287 PDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRTL 340 (365)
T ss_pred CCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999996 444432 3455556666677775553
No 95
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.17 E-value=0.016 Score=57.49 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +.+|.+...+ ++.|+|||+.++.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~~-e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKVT-ETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEecCCC-cchHHHHHHHHHhhcC
Confidence 3689999999999999999999999 8999876554 5779999999988876
No 96
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.11 E-value=0.02 Score=57.56 Aligned_cols=51 Identities=31% Similarity=0.447 Sum_probs=45.5
Q ss_pred CCCeEEEEcCC-cCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGS-SRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~-s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|+++||+ ++++.+.+.+...| +.+|.+..++ ++.|.|||+.++.-.|
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 47899999999 99999999999999 8999887665 5779999999998877
No 97
>PRK10331 L-fuculokinase; Provisional
Probab=96.11 E-value=0.02 Score=56.58 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +.+|.++..+ ++.|+|||+.++.-.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~~~-e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVLDDA-ETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEecCcc-cchHHHHHHHHHHhcC
Confidence 4689999999999999999999999 8999877654 5789999999998776
No 98
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.10 E-value=0.019 Score=56.55 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +.+|.++.++ ++.+.|||+.++.-.|
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 3678999999999999999999999 8999878765 5679999999998877
No 99
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.07 E-value=0.012 Score=50.16 Aligned_cols=29 Identities=38% Similarity=0.428 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCceEeeechhHHHHHH
Q 014219 157 QRQATEDAATQCGLQVLKIIAEPTAAAIA 185 (428)
Q Consensus 157 ~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~ 185 (428)
..+.+.++++.+|+....++.+|.|++.+
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 46788999999999999999999998754
No 100
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.99 E-value=0.034 Score=55.46 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred eHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHH
Q 014219 307 TRARFE-QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 307 ~~~~~~-~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~ 385 (428)
++.++. .+++.+.-.+...+....+..+. .++.|.++||+++++.+.+.+...+ +.+|.++.++ ++.|.|||++
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~l 445 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACIL 445 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHH
Confidence 344433 33444444444444444443332 4789999999999999999999999 8999888666 4779999999
Q ss_pred HHHhcC
Q 014219 386 AAILSG 391 (428)
Q Consensus 386 ~~~~~~ 391 (428)
++.-.|
T Consensus 446 a~~~~G 451 (505)
T TIGR01314 446 GLKALG 451 (505)
T ss_pred HHHhcC
Confidence 998877
No 101
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=95.93 E-value=0.12 Score=47.55 Aligned_cols=53 Identities=30% Similarity=0.427 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCC---CcCCCC---ChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGK---NLCRHI---NADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~---~v~~~~---~p~~ava~Ga~~~~~~~~~ 391 (428)
+++.|+|+|-.++++-+.+.++..|.+. ++.... --....|+|+|+.|.-+.|
T Consensus 260 ~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 260 DPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 5678999999999999988888888421 222111 1124589999999987766
No 102
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.90 E-value=0.028 Score=55.26 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +++|.... .++.|.||++.++.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAGP--VEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcCC--chHHHHHHHHHHHHhcC
Confidence 3679999999999999999999999 89886543 56889999999998777
No 103
>PLN02295 glycerol kinase
Probab=95.87 E-value=0.03 Score=55.96 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++.+.+.+...+ +.+|.++..+ ++.|+|||+.++.-.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~~~-e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRPADI-ETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEecCcc-ccHHHHHHHHHHhhcC
Confidence 4678999999999999999999999 8999777554 6789999999988877
No 104
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=95.69 E-value=0.13 Score=46.36 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHH------HHHHHhhcC----CCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKL------QQLLQDFFL----GKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l------~~~l~~~~~----~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
+.+.+++.|.....+. +.+.+.|.=-+.+.+-. .+.|.+.++ +-++......+.+=|.|-+++...-..
T Consensus 355 ~~e~~~qkL~wf~~de-~~~~~alal~gen~~~y~~v~~va~ai~~~~k~~s~~hplivv~~~D~gKaLGq~l~~~l~~~ 433 (473)
T COG4819 355 LVEAWQQKLIWFDLDE-KTDAYALALPGENPVRYAAVLTVANAIVDFVKRFSNPHPLIVVAEQDFGKALGQLLRPQLPGQ 433 (473)
T ss_pred HHHHHHHHHhhhccCc-CcceEEEEcccCCChhHHHHHHHHHHHHHHHHhcCCCCcEEEEEhhHHHHHHHHHhcccCCCC
Confidence 4444555555443332 23444443333333333 234444332 224555556777888888887754433
Q ss_pred CCCCcCcceEEeecccceeeeEEcCCcccEEEeC
Q 014219 392 VCSDKAEDLVILDLKPCSHEPKIATGSNPSLLIC 425 (428)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (428)
-...-+.++.|..--.-.||--..+|+..|++-|
T Consensus 434 ~pliciD~vkV~~GDYIDIGkPl~~GsVlPVvvK 467 (473)
T COG4819 434 LPLICIDEVKVRAGDYIDIGKPLFGGSVLPVVVK 467 (473)
T ss_pred ccEEEEeeEEEcCCCeEeccCccCCCceeEEEEE
Confidence 2223345667777777788888889998887654
No 105
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.61 E-value=0.038 Score=55.34 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+++++...+.+...+ +++|.++.+++ +.++|||+.++.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~e-~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVKE-ATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecccC-chHHHHHHHHHHHhC
Confidence 3689999999999999999999999 99998887554 679999999998877
No 106
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.57 E-value=0.045 Score=53.98 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGV 392 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~ 392 (428)
.++.|.++||+++++.+.+.+...+ +.+|.... .++.|.||++.+..-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999 89886654 378899999999988773
No 107
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.13 Score=51.21 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|.++||+|+++...+.+...+ +.+|..+.....+.+.||++.+....+
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~~~~~ 452 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAAALGG 452 (502)
T ss_pred CccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHHHhCC
Confidence 3568999999999999999999999 899987766666666666666655543
No 108
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=95.12 E-value=0.41 Score=42.37 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhcC---CCCcCCCCChhhHHHhHHHHHHH
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFFL---GKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~~---~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
..+|.|+||||.+....+.++|.++.. ..-+....+-.+|.|.|+.+.-.
T Consensus 295 G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRVL~ 347 (358)
T COG3426 295 GKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRVLR 347 (358)
T ss_pred CCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHHhh
Confidence 568999999999999999999999873 23455566777899999976543
No 109
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=95.07 E-value=1.4 Score=39.10 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.4
Q ss_pred EEEEeccCceEEEEEEeCCe
Q 014219 8 AIGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~ 27 (428)
.+.||+|+|+++.++.+++.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~ 21 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGK 21 (251)
T ss_pred eEEEEeCCCeEEEEEecCCe
Confidence 68999999999999997553
No 110
>PLN02666 5-oxoprolinase
Probab=95.04 E-value=1.2 Score=49.04 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=51.4
Q ss_pred EeeHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCC-cCCCCChhhHHHhHH
Q 014219 305 TITRARFEQLNMDLF-EKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKN-LCRHINADEAVATGA 382 (428)
Q Consensus 305 ~i~~~~~~~~~~~~i-~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~-v~~~~~p~~ava~Ga 382 (428)
.++-++...-+..+. ....+.|.......+.++.+ -.++..||.+ |...-.|.+.+ +.+ |+.|.+|.-..|.|+
T Consensus 453 g~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~l-gi~~vivP~~~gv~sA~G~ 528 (1275)
T PLN02666 453 DMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARAL-GMSEVFVHRYCGILSAYGM 528 (1275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHc-CCCEEEeCCCccHHHHHHH
Confidence 444555554444433 34445555555555544432 2444455555 78899999999 665 889999999999999
Q ss_pred HHHHHH
Q 014219 383 AIQAAI 388 (428)
Q Consensus 383 ~~~~~~ 388 (428)
++.-.+
T Consensus 529 ~~ad~~ 534 (1275)
T PLN02666 529 GLADVV 534 (1275)
T ss_pred Hhhhhh
Confidence 876544
No 111
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.1 Score=49.16 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=45.4
Q ss_pred HcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHH
Q 014219 332 KAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 332 ~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
..+.+..+...|+++||.|+..-|-+.|...| +.+|... +-..++|.|+|++++.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34444456789999999999999999999999 8888777 6667889999998654
No 112
>PRK09557 fructokinase; Reviewed
Probab=94.99 E-value=2.9 Score=38.51 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC--------CCCcCCCCChhhHHHhHHHH
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL--------GKNLCRHINADEAVATGAAI 384 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~--------~~~v~~~~~p~~ava~Ga~~ 384 (428)
++++...+.+...+...+.- -+++.|+|.||.++.+.+.+.+++.+. ..++..+.-...+.++||++
T Consensus 223 ~~l~~~~~~La~~l~~l~~~-----ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~ 297 (301)
T PRK09557 223 LAFRRYEDRLAKSLAHVINI-----LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAW 297 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhH
Confidence 34444444455555555544 346789998888877666655555542 12344444456678999987
Q ss_pred HH
Q 014219 385 QA 386 (428)
Q Consensus 385 ~~ 386 (428)
..
T Consensus 298 ~~ 299 (301)
T PRK09557 298 LW 299 (301)
T ss_pred hh
Confidence 54
No 113
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=94.85 E-value=2.7 Score=37.37 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.8
Q ss_pred EEEeccCceEEEEEEeCCe
Q 014219 9 IGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~~~ 27 (428)
+.||+|+|++++++++++.
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6899999999999998664
No 114
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.41 E-value=0.38 Score=44.30 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.0
Q ss_pred EEEEEEecCcceEEEEEEE
Q 014219 203 NVLIFDLGGGTFDVSLLAI 221 (428)
Q Consensus 203 ~~lvvDiG~~t~d~~~~~~ 221 (428)
+++++||||.|||++++.-
T Consensus 129 ~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CEEEEEcCccceeeEEecC
Confidence 3899999999999999873
No 115
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.84 Score=39.90 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.0
Q ss_pred ceEEEEEEecCcceEEEEEEEe
Q 014219 201 VKNVLIFDLGGGTFDVSLLAIE 222 (428)
Q Consensus 201 ~~~~lvvDiG~~t~d~~~~~~~ 222 (428)
++..++||+|+.|||+.-+..+
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~g 150 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDG 150 (330)
T ss_pred CCceEEEecCCcccceEeecch
Confidence 5668999999999999876643
No 116
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=93.90 E-value=0.2 Score=47.06 Aligned_cols=72 Identities=24% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCC----CChhhHHHhHHHHHHHHh
Q 014219 315 NMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRH----INADEAVATGAAIQAAIL 389 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~----~~p~~ava~Ga~~~~~~~ 389 (428)
+.-+.+=..+.|.+.+++... +++.|+++||+++.+.|.++|++.+++.+|... .+|+.--|.+-|++|.+.
T Consensus 263 ~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 263 LATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 333333444445555555432 267999999999999999999999977555322 233434444555555554
No 117
>PRK12408 glucokinase; Provisional
Probab=93.67 E-value=6.2 Score=37.02 Aligned_cols=68 Identities=13% Similarity=-0.046 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCe-EEEEcCCcC--cHHHHHH--HHhhcC---------CCCcCCCCChhhHHH
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDD-VVIVGGSSR--IPKLQQL--LQDFFL---------GKNLCRHINADEAVA 379 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~-Vvl~GG~s~--~~~l~~~--l~~~~~---------~~~v~~~~~p~~ava 379 (428)
+++...+.+...+.....-. +++. |+|.||-|. .+++.+. +++.+. ..++....+. .+..
T Consensus 251 ~~~~~~~~La~~i~nl~~~l-----dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~-~agl 324 (336)
T PRK12408 251 ALQVFCGFLGSVVGDMALAY-----GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHG-QLGV 324 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCC-ChHH
Confidence 33444444444444444443 3456 999999874 3555543 555442 2345555555 5899
Q ss_pred hHHHHHHH
Q 014219 380 TGAAIQAA 387 (428)
Q Consensus 380 ~Ga~~~~~ 387 (428)
+||+.++.
T Consensus 325 ~GAa~~~~ 332 (336)
T PRK12408 325 LGAASWYL 332 (336)
T ss_pred HHHHHHHH
Confidence 99986654
No 118
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.62 E-value=0.46 Score=43.48 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcc
Q 014219 159 QATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLG 238 (428)
Q Consensus 159 ~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~G 238 (428)
..+..+-+..|++. .+++..+=|.+.|.--... . ......+++|+|||+|.++.++ ++.+. ...+.++|
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~---l--~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~Sl~lG 143 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLSS---L--PPDKNGLVIDIGGGSTELILFE--NGKVV---FSQSLPLG 143 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHH---S--TTTSSEEEEEEESSEEEEEEEE--TTEEE---EEEEES--
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhh---c--cccCCEEEEEECCCceEEEEEE--CCeee---EeeeeehH
Confidence 34555556679877 4454444343433221111 0 1256689999999999999987 44433 33348999
Q ss_pred hHHHHHHH
Q 014219 239 GVDFNNRM 246 (428)
Q Consensus 239 g~~id~~l 246 (428)
.-.+.+.+
T Consensus 144 ~vrl~e~~ 151 (285)
T PF02541_consen 144 AVRLTERF 151 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888777
No 119
>PRK13326 pantothenate kinase; Reviewed
Probab=93.57 E-value=5.3 Score=35.89 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.3
Q ss_pred ceEEEEeccCceEEEEEEeCCe
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~ 27 (428)
.+++.||+|+|+++++.+++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 4689999999999999998664
No 120
>PTZ00288 glucokinase 1; Provisional
Probab=93.36 E-value=7.9 Score=37.23 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred ceEEEEeccCceEEEEEEeC
Q 014219 6 GVAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~ 25 (428)
.++||+|+|.|++++++.+.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 57999999999999999954
No 121
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.95 Score=41.90 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=43.0
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCC----CCChhhHHHhHHHHHHHHhcC
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCR----HINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~----~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.+.+.++++||+.+.+.+...+...+++..|.. ..+++..-|.+-|+++.+...
T Consensus 289 ~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l~ 346 (371)
T COG2377 289 GDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTLE 346 (371)
T ss_pred CCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHHh
Confidence 467899999999999999999999998655542 346666778888888877643
No 122
>PRK13329 pantothenate kinase; Reviewed
Probab=93.24 E-value=4.5 Score=36.07 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=16.4
Q ss_pred eEEEEeccCceEEEEEEe
Q 014219 7 VAIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~ 24 (428)
+++-||.|+|.+|.++.+
T Consensus 2 m~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 2 TFLAIDVGNTRLKWGLYD 19 (249)
T ss_pred CEEEEEcCcchheeeEec
Confidence 478899999999999887
No 123
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=92.97 E-value=11 Score=37.91 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=37.9
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCC---ChhhHHHhHHHHHHHHhcC
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHI---NADEAVATGAAIQAAILSG 391 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~---~p~~ava~Ga~~~~~~~~~ 391 (428)
++.|+|+||-+...++++.+.+.+. +.++..++ --+.+++.|++.+.....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 5689999999999999999996652 44555554 2346788887776555544
No 124
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=92.50 E-value=8.6 Score=35.41 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCC--------CCcCCCCChhhHHHhHHHHH
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLG--------KNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~--------~~v~~~~~p~~ava~Ga~~~ 385 (428)
+++...+.+...+...+.- -+++.|+|-||.+..+.+.+.+++.+.. ..+........+.++||+.+
T Consensus 225 ~~~~~~~~la~~l~n~~~~-----ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 299 (303)
T PRK13310 225 HVERYLDLLAICLGNILTI-----VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFL 299 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH-----cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHH
Confidence 3444444444444444444 3467899988877766666766666621 23444555667889999987
Q ss_pred H
Q 014219 386 A 386 (428)
Q Consensus 386 ~ 386 (428)
+
T Consensus 300 ~ 300 (303)
T PRK13310 300 H 300 (303)
T ss_pred h
Confidence 6
No 125
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=92.44 E-value=0.56 Score=44.93 Aligned_cols=77 Identities=25% Similarity=0.278 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCC
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDR-TAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGV 392 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~-~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~ 392 (428)
+++-.++.|+=...++++....+. ..+..+-+=||.+++.++.+.....+ +.+|.++.+ .++.|.|||++|..-.|+
T Consensus 376 i~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~G~ 453 (499)
T COG0554 376 IARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAVGF 453 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhhCc
Confidence 344445555544444444432222 24788899999999999999999999 899998855 567899999999998883
No 126
>PRK03011 butyrate kinase; Provisional
Probab=92.27 E-value=0.78 Score=43.28 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC---CCCcCCCCChhhHHHhHHHHHH
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL---GKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~---~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
.+++..+..+...|.......+ .+++.|+|+||.+..+.+++.|++.+. ...+....+-..|.+.||+..-
T Consensus 272 ~ald~~~~~lak~I~~l~~~L~---gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rvl 345 (358)
T PRK03011 272 LVYEAMAYQIAKEIGAMAAVLK---GKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRVL 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHHH
Confidence 3444455555555555544431 247899999999999999999988874 3456666677789999987654
No 127
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=91.86 E-value=3.9 Score=37.93 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=67.7
Q ss_pred eHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCC------------CCCHHHHHHHHHHHHHcCCceEeeechhHHHHHH
Q 014219 118 AAEEISSMVLKKKREIAEAFVGTAVTNAVITVPA------------YFSDSQRQATEDAATQCGLQVLKIIAEPTAAAIA 185 (428)
Q Consensus 118 ~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~------------~~~~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~ 185 (428)
+.++++..|+..+... ...+...+++|+- .|+-. .+. ..+..|++.+.++.+=+|.+++
T Consensus 37 s~~~~l~~~l~~~~~~-----~~~p~~~~iavAGPV~~~~~~lTN~~W~i~-~~~---l~~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 37 SFEDALADYLAELDAG-----GPEPDSACIAVAGPVRDGKVRLTNLPWTID-ADE---LAQRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp HHHHHHHHHHHHTCHH-----HTCEEEEEEEESS-EETTCEE-SSSCCEEE-HHH---CHCCCT-TCEEEEEHHHHHHHH
T ss_pred CHHHHHHHHHHhcccC-----CCccceEEEEEecCccCCEEEecCCCcccc-HHH---HHHHhCCceEEEEcccchheec
Confidence 5666777777654111 1123456666651 23322 222 2234588999999999999998
Q ss_pred hhccccccCC----ccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcch-HHHHHHHHHHHHHHH
Q 014219 186 YGLDRQQQGG----IAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGG-VDFNNRMVDYFVEEF 254 (428)
Q Consensus 186 ~~~~~~~~~~----~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg-~~id~~l~~~l~~~~ 254 (428)
...-...... -....+...+|+-.|.|==-..++...++..-.-+..++..+.- .+.+.++.+++.+++
T Consensus 108 l~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 108 LPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRY 181 (316)
T ss_dssp HHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHC
T ss_pred cCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhc
Confidence 7442222111 11235778899999965444444444333333333334444433 456677888887765
No 128
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=91.76 E-value=0.09 Score=41.09 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.3
Q ss_pred EEEEeccCceEEEEEEeCCee
Q 014219 8 AIGIDLGTTYSCVAVWQHDKV 28 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~ 28 (428)
+++||+|++.+.+++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999977644
No 129
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=91.44 E-value=0.25 Score=47.34 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHc-----CC------ceEeeechhHHHHHHhhccccccCCccccCc-eEEEEEEecCcceEEEEEEE
Q 014219 155 DSQRQATEDAATQC-----GL------QVLKIIAEPTAAAIAYGLDRQQQGGIAASGV-KNVLIFDLGGGTFDVSLLAI 221 (428)
Q Consensus 155 ~~~~~~l~~a~~~a-----g~------~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~-~~~lvvDiG~~t~d~~~~~~ 221 (428)
...|+.+++.+.+- |+ ..-.+++-|.|.....-.-.... ....+ ..+++||+||-|||+-.+.-
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~---~~~~g~g~ll~VDIGGATTDvhSv~~ 268 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGT---DKDDGIGDFILIDIGGATTDVHSAAA 268 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcc---ccccCcCCEEEEEcCccccchhhccC
Confidence 34577777765432 44 23346666766665543222210 00012 34899999999999976553
No 130
>PRK09698 D-allose kinase; Provisional
Probab=91.30 E-value=12 Score=34.47 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCc-----HHHHHHHHhhcC------CCCcCCCCChhhHHHhHHH
Q 014219 315 NMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRI-----PKLQQLLQDFFL------GKNLCRHINADEAVATGAA 383 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~-----~~l~~~l~~~~~------~~~v~~~~~p~~ava~Ga~ 383 (428)
++...+.+...+...+.- -+++.|+|.||.+.. +.+++.+++... ..++........+.+.||+
T Consensus 217 ~~~~~~~la~~l~~li~~-----ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa 291 (302)
T PRK09698 217 IQSLLENLARAIATSINL-----FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAA 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-----hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHH
Confidence 334444444445544443 346789998887764 335555555431 1234555566778899999
Q ss_pred HHHH
Q 014219 384 IQAA 387 (428)
Q Consensus 384 ~~~~ 387 (428)
+++.
T Consensus 292 ~~~~ 295 (302)
T PRK09698 292 ILAH 295 (302)
T ss_pred HHHH
Confidence 8864
No 131
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=89.77 E-value=5.5 Score=41.12 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=17.6
Q ss_pred CceEEEEeccCceEEEEEEe
Q 014219 5 AGVAIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~ 24 (428)
...++|||+|.|+++++..+
T Consensus 17 ~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 17 DGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCEEEEEcCchhheeeeec
Confidence 35699999999999999884
No 132
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=89.15 E-value=2.4 Score=40.47 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFL 364 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~ 364 (428)
.+++-.+.+|...|-....... ..+|.|+||||-+ .++.+++.|.+.+.
T Consensus 300 lA~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 300 LALDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 4555566666666666666541 2489999999999 99999999999884
No 133
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=88.70 E-value=11 Score=35.89 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCc--eEeeechhHHHHHHhhcc
Q 014219 158 RQATEDAATQCGLQ--VLKIIAEPTAAAIAYGLD 189 (428)
Q Consensus 158 ~~~l~~a~~~ag~~--~v~~~~E~~Aaa~~~~~~ 189 (428)
.+.+.++++.-+++ .+-++.+.+++.++-.+.
T Consensus 184 v~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt 217 (466)
T COG5026 184 VRLLQEALSARNLPIRVVAVINDTTGTLLASVYT 217 (466)
T ss_pred HHHHHHHHHhcCCceEEEEEecccHHHHHHHhhc
Confidence 56778888887775 566889999888875444
No 134
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=88.67 E-value=4.1 Score=36.02 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=60.9
Q ss_pred ccCeEEE--EeCCCCCHHHHHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEE
Q 014219 141 AVTNAVI--TVPAYFSDSQRQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSL 218 (428)
Q Consensus 141 ~~~~~vi--tvP~~~~~~~~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~ 218 (428)
.+..+++ .+|.+++. -+.+++.+...|.+. .+.+-..||.+..+.+..- .....+++||+|=|.|-.+.
T Consensus 113 ~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v------~~~~~~~~vniGN~HTlaa~ 183 (254)
T PF08735_consen 113 RPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV------SSREGIIVVNIGNGHTLAAL 183 (254)
T ss_pred CHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh------hccCCeEEEEeCCccEEEEE
Confidence 3446666 56655432 123333444444445 6777778888888876643 23667999999999999888
Q ss_pred EEEeCCeEEEEEecCCCCcchHHHHHHHHHHH
Q 014219 219 LAIENGVIRVRATDGNTRLGGVDFNNRMVDYF 250 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 250 (428)
+. ++++.-+....+..+-...+...+.++.
T Consensus 184 v~--~~rI~GvfEHHT~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 184 VK--DGRIYGVFEHHTGMLTPEKLEEYLERLR 213 (254)
T ss_pred Ee--CCEEEEEEecccCCCCHHHHHHHHHHHH
Confidence 84 5554444444446666666555554444
No 135
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.53 E-value=5.1 Score=35.32 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred EeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 014219 173 LKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVE 252 (428)
Q Consensus 173 v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 252 (428)
..+++.-.|++...+.+.. ....+|||+|-|.+..+++. ++++.-+....+..+....+-..|.++...
T Consensus 207 av~mDskfaav~gal~dpa---------a~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~~G 275 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA---------ADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFVEG 275 (342)
T ss_pred EEEEcchhHhhhhcccCcc---------cCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHHhc
Confidence 5666777777777776654 33789999999999999887 445554445555777777777777777755
Q ss_pred HHH
Q 014219 253 EFK 255 (428)
Q Consensus 253 ~~~ 255 (428)
++.
T Consensus 276 eL~ 278 (342)
T COG4012 276 ELE 278 (342)
T ss_pred ccc
Confidence 443
No 136
>PRK12440 acetate kinase; Reviewed
Probab=88.25 E-value=24 Score=33.63 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHH-HHHHHHhhcC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPK-LQQLLQDFFL 364 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~-l~~~l~~~~~ 364 (428)
.+++-.+.+|...|-......+ .+|.|++|||-+.... +++.+.+.+.
T Consensus 298 lA~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 298 LAFEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3555566667766666666553 4899999999887766 9999999884
No 137
>PLN02405 hexokinase
Probab=87.70 E-value=2.7 Score=41.37 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCc--eEeeechhHHHHHHhhccc
Q 014219 158 RQATEDAATQCGLQ--VLKIIAEPTAAAIAYGLDR 190 (428)
Q Consensus 158 ~~~l~~a~~~ag~~--~v~~~~E~~Aaa~~~~~~~ 190 (428)
.+.|++++++-|++ .+.++.+.++..++..+..
T Consensus 208 v~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~ 242 (497)
T PLN02405 208 VGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN 242 (497)
T ss_pred HHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC
Confidence 67889999988874 5778999999888877664
No 138
>PRK07058 acetate kinase; Provisional
Probab=87.66 E-value=4.3 Score=38.46 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcC
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFL 364 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~ 364 (428)
..+++-.+.+|...|-......+ .+|.|++|||-+ +++.+++.|.+.+.
T Consensus 295 ~lA~d~f~yri~k~IGa~~a~Lg----~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 295 REALDLFALRIAGEIARLAATLG----GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34566667777777766666653 489999999999 99999999999884
No 139
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.38 E-value=3 Score=37.74 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=39.7
Q ss_pred CCeEEEEcC--CcCcH-HHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 340 VDDVVIVGG--SSRIP-KLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 340 i~~Vvl~GG--~s~~~-~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
...|+|+|- +++.| .+++.|++.| +.+|....- ...|+|+|+.|.=+.+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L~~--ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVLDS--ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEecc--hhhhhhHHHHHHHHhC
Confidence 348999998 88999 9999999999 566554433 7899999999987755
No 140
>PLN02920 pantothenate kinase 1
Probab=87.17 E-value=4.8 Score=38.06 Aligned_cols=52 Identities=10% Similarity=-0.170 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCCcCcH-HHHHHHHhhc-----CCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 338 TAVDDVVIVGGSSRIP-KLQQLLQDFF-----LGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~-~l~~~l~~~~-----~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
..++.|++.|.+.+.+ ..++.|.-.. ++.+..-+.+..+.-|.||.+.....
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~~~ 353 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYEKH 353 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcccc
Confidence 4578999999999997 6666444433 35677888899999999998766443
No 141
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=86.75 E-value=3.9 Score=38.93 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFL 364 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~ 364 (428)
.+++-.+.+|...|-......+- .+|.|++|||-+ .++.+++.|.+.+.
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~G---~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLEG---NLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34555666666666666665431 378999999999 89999999999885
No 142
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.57 E-value=1.9 Score=44.22 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=31.4
Q ss_pred ceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEe
Q 014219 171 QVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIE 222 (428)
Q Consensus 171 ~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~ 222 (428)
+.-.+.+-|.|...++.+-... ..+ +++++|+||.|||++++..+
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~------~~g-~~i~~DmGGTStDva~i~~G 298 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGL------KAG-NAIVFDMGGTSTDVALIIDG 298 (674)
T ss_pred CeeeEeeccHHHHHHHHHhccc------ccC-CEEEEEcCCcceeeeeeecC
Confidence 3445667787777776554221 113 69999999999999998843
No 143
>PLN02362 hexokinase
Probab=86.24 E-value=5.6 Score=39.38 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCC--ceEeeechhHHHHHHhhccc
Q 014219 157 QRQATEDAATQCGL--QVLKIIAEPTAAAIAYGLDR 190 (428)
Q Consensus 157 ~~~~l~~a~~~ag~--~~v~~~~E~~Aaa~~~~~~~ 190 (428)
-.+.|++++.+-|+ +.+.++.+.++..++..+..
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~ 242 (509)
T PLN02362 207 VAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD 242 (509)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC
Confidence 37888999988886 46778899999888866653
No 144
>PLN02914 hexokinase
Probab=86.07 E-value=4.7 Score=39.64 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCC--ceEeeechhHHHHHHhhccc
Q 014219 158 RQATEDAATQCGL--QVLKIIAEPTAAAIAYGLDR 190 (428)
Q Consensus 158 ~~~l~~a~~~ag~--~~v~~~~E~~Aaa~~~~~~~ 190 (428)
.+.|++++++-|+ +.+.++...++..++..+..
T Consensus 208 v~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~ 242 (490)
T PLN02914 208 VACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD 242 (490)
T ss_pred HHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC
Confidence 6788999988876 46778999999888876664
No 145
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=85.71 E-value=1 Score=40.15 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.5
Q ss_pred eEEEEeccCceEEEEEEeCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~ 26 (428)
+++|||+|||++|++..+.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 58999999999999988643
No 146
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=85.67 E-value=33 Score=32.53 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=55.7
Q ss_pred EeeHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCCh-hhHHHhHH
Q 014219 305 TITRARFEQLNMDLFEKCI-EHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINA-DEAVATGA 382 (428)
Q Consensus 305 ~i~~~~~~~~~~~~i~~i~-~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p-~~ava~Ga 382 (428)
.-...++...++..++++. +.++..+++.+.+ +.+.|+||-+..--+...|.+..+-.++.+++-| +..+|.||
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~----~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGa 207 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTGID----NNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGA 207 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHH
Confidence 3456677777777666655 4556666666533 2499999999998888999888533455555555 47799999
Q ss_pred HHHHHHhcC
Q 014219 383 AIQAAILSG 391 (428)
Q Consensus 383 ~~~~~~~~~ 391 (428)
|+++....+
T Consensus 208 A~~~~~~~~ 216 (360)
T PF02543_consen 208 ALYAWHELG 216 (360)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999997765
No 147
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=85.21 E-value=3.1 Score=43.19 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCC---ChhhHHHhHHHHHHH
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHI---NADEAVATGAAIQAA 387 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~---~p~~ava~Ga~~~~~ 387 (428)
.++.|+|+||-++..+|++.+.+.++ +.++..+. --+.+++.|.+++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998874 34444443 235789999988763
No 148
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=85.01 E-value=34 Score=32.11 Aligned_cols=93 Identities=11% Similarity=-0.000 Sum_probs=50.9
Q ss_pred ccCeEEEEe-CCCCCHHHH--HHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEE
Q 014219 141 AVTNAVITV-PAYFSDSQR--QATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVS 217 (428)
Q Consensus 141 ~~~~~vitv-P~~~~~~~~--~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~ 217 (428)
+++.+.+|. |-.++.-.. ..-+..+...+.+- .=++.-+|-++........ ..+ +++=+-||+|.+.
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~l~~~~------~~P---l~LlVSGGhT~l~ 139 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGRLVTGA------ENP---VVLYVSGGNTQVI 139 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHhhccCC------CCC---eEEEEeCCceEEE
Confidence 466788887 544443221 12233333445554 4456666666665553211 112 5566667788876
Q ss_pred EEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 014219 218 LLAIENGVIRVRATDGNTRLGGVDFNNRM 246 (428)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~Gg~~id~~l 246 (428)
. ...+.+++++...+ .--|+.+|+--
T Consensus 140 ~--~~~~~~~ilG~T~D-da~Gea~DKva 165 (345)
T PTZ00340 140 A--YSEHRYRIFGETID-IAVGNCLDRFA 165 (345)
T ss_pred E--ecCCeEEEEEeecc-cchhHHHHHHH
Confidence 5 34566788887764 44466666544
No 149
>PRK14878 UGMP family protein; Provisional
Probab=84.97 E-value=33 Score=31.96 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCC
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHI 372 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~ 372 (428)
++.|+|+||-++..++++.+.+.+. +.++..++
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 276 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 5689999999999999999999763 34454443
No 150
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=84.83 E-value=0.96 Score=33.64 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.6
Q ss_pred eEEEEeccCceEEEEEEeC
Q 014219 7 VAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~ 25 (428)
.++|||+|.+++++++.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4899999999999998853
No 151
>PTZ00297 pantothenate kinase; Provisional
Probab=84.66 E-value=80 Score=36.09 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.4
Q ss_pred CCCCeEEEEcC-CcCcHHHHHHHHhhc-----CCCCcCCCCChhhHHHhHHHHHH
Q 014219 338 TAVDDVVIVGG-SSRIPKLQQLLQDFF-----LGKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 338 ~~i~~Vvl~GG-~s~~~~l~~~l~~~~-----~~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
.+++.|+++|+ ....|..++.|.... ++.+..-..+..+.-|.||++..
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 46889999999 666888888877766 24566677788899999998765
No 152
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=84.35 E-value=35 Score=31.72 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=115.7
Q ss_pred EeHHHHHHHHHHHHHHHHHHHc---C---CccCeEEEEeCCCCCHHHHH--HHHHHHHH-cCCceEeeechhHHHHHHhh
Q 014219 117 VAAEEISSMVLKKKREIAEAFV---G---TAVTNAVITVPAYFSDSQRQ--ATEDAATQ-CGLQVLKIIAEPTAAAIAYG 187 (428)
Q Consensus 117 ~~~~~l~~~~l~~l~~~~~~~~---~---~~~~~~vitvP~~~~~~~~~--~l~~a~~~-ag~~~v~~~~E~~Aaa~~~~ 187 (428)
+.|+....+..+.+....++.+ + .+++.+.+|.=+.....-+- .+.+++.. .+. .+.-+....+-.+...
T Consensus 41 VvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~k-Pli~VnH~~gHi~a~~ 119 (342)
T COG0533 41 VVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNK-PLIPVNHLEGHIEAAR 119 (342)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCC-CEeecchHHHHHHHHH
Confidence 4677777777766544444433 2 24677888775555543222 22222222 233 3455677777777666
Q ss_pred ccccccCCccccCceEEEEEEecCcceEEEEEEEeC-CeEEEEEecCCCCcchHHHHHHHHHHHHHHHHhhhCCCCCCCH
Q 014219 188 LDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIEN-GVIRVRATDGNTRLGGVDFNNRMVDYFVEEFKRKNKIDISGNA 266 (428)
Q Consensus 188 ~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~-~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~ 266 (428)
..... ....+.+=+-||.|.+..++ + +.+++++...+..+ |+.+|.-- +. .+...+..+
T Consensus 120 l~~~~--------~~p~v~LlVSGGHTqli~~~--~~g~y~ilGeTlDdA~-Gea~DKvA-R~--------lGL~yPGGp 179 (342)
T COG0533 120 LETGL--------AFPPVALLVSGGHTQLIAVR--GIGRYEVLGETLDDAA-GEAFDKVA-RL--------LGLGYPGGP 179 (342)
T ss_pred hccCC--------CCCcEEEEEecCceEEEEEc--CCCcEEEEeeechhhh-hHHHHHHH-HH--------hCCCCCCcH
Confidence 55441 11123333345555554444 3 56777777664444 55555432 22 222223323
Q ss_pred HHHHHHHHHHHHHHHHhcc--CCc--eeEEEeeccc--------CcceeEEeeHHHHHHH---HHH-HHHHHHHHHHHHH
Q 014219 267 RALHRLRIACESAKRTLSS--TIQ--TSIEIDYLYE--------GINFSSTITRARFEQL---NMD-LFEKCIEHVDTCL 330 (428)
Q Consensus 267 ~~~~~l~~~~e~~K~~l~~--~~~--~~~~~~~~~~--------~~~~~~~i~~~~~~~~---~~~-~i~~i~~~i~~~l 330 (428)
...++-+....-...|.. ... .++++..+-. .... ..+..++.+++ |+. .++.+.+...+++
T Consensus 180 -~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~-~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl 257 (342)
T COG0533 180 -AIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQK-EELNEEDKEDIAASFQEAVFDMLVEKTERAL 257 (342)
T ss_pred -HHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111100011111 001 1111111100 0000 12223343333 333 4555666667777
Q ss_pred HHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC--CCCc------CCCCChhhHHHhHHHHHHH
Q 014219 331 AKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL--GKNL------CRHINADEAVATGAAIQAA 387 (428)
Q Consensus 331 ~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v------~~~~~p~~ava~Ga~~~~~ 387 (428)
+..+ .+.++++||-+....||+.+++... +..+ .+++|...-...|+..+..
T Consensus 258 ~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 258 KHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred HHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 7644 5689999999999999999998762 3233 3444544444445544443
No 153
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=21 Score=30.93 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCC--CCcCCCCChhhHHHhHHHHH
Q 014219 318 LFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLG--KNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 318 ~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~--~~v~~~~~p~~ava~Ga~~~ 385 (428)
++..+.+.-.+++..++. +.|+++||-+..--||+++.....+ -.+..+ |-.+++-.|+.+.
T Consensus 238 vFamLVEiTERAMAh~~s-----~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faT-DeRfCIDNG~MIA 301 (336)
T KOG2708|consen 238 VFAMLVEITERAMAHCGS-----KEVLIVGGVGCNERLQEMMAIMCSERGGKLFAT-DERFCIDNGVMIA 301 (336)
T ss_pred HHHHHHHHHHHHHhhcCC-----CcEEEEecccccHHHHHHHHHHHHhcCCceEec-ccceeeeCchHHH
Confidence 334444555666666553 4899999999999999999888742 233333 3444444444443
No 154
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=83.28 E-value=5.3 Score=37.68 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCC-CC--cCCCCChhhHHHhHHHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLG-KN--LCRHINADEAVATGAAIQ 385 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~-~~--v~~~~~p~~ava~Ga~~~ 385 (428)
..+++.....+...|.......+ .+++.|+|+||-+..+.+++.+.+.+.- .+ +..-.+--++.|.||...
T Consensus 269 ~~a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~rv 342 (351)
T TIGR02707 269 KLILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALRV 342 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHHH
Confidence 34555556666666665555542 1468999999999999999999998842 23 333344456788888754
No 155
>PF13941 MutL: MutL protein
Probab=82.53 E-value=16 Score=35.67 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.0
Q ss_pred EEEEEecCcceEEEEEEEeCCeEEEEEe
Q 014219 204 VLIFDLGGGTFDVSLLAIENGVIRVRAT 231 (428)
Q Consensus 204 ~lvvDiG~~t~d~~~~~~~~~~~~~~~~ 231 (428)
++++|||+.+|.++++....+..++++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~ 29 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQ 29 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEE
Confidence 6999999999999999955555555544
No 156
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=82.09 E-value=42 Score=30.98 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEc-CCcCc-HHHHHHHHhhcCCC--------CcCCCCC-hhhHHHhH
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVG-GSSRI-PKLQQLLQDFFLGK--------NLCRHIN-ADEAVATG 381 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~G-G~s~~-~~l~~~l~~~~~~~--------~v~~~~~-p~~ava~G 381 (428)
++++...+.+...+...+.-. ++..|++.| |.+.. +.+.+.+++.+... .+....- ...+.+.|
T Consensus 226 ~~~~~~~~~la~~ianl~~~~-----~P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 300 (314)
T COG1940 226 EVIERAADYLARGLANLINLL-----DPEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIG 300 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchh
Confidence 444445555555555555543 356888888 66655 77777777655211 1111111 24677788
Q ss_pred HHHHHHHh
Q 014219 382 AAIQAAIL 389 (428)
Q Consensus 382 a~~~~~~~ 389 (428)
|++.+...
T Consensus 301 a~~~~~~~ 308 (314)
T COG1940 301 AALLALLL 308 (314)
T ss_pred HHHHHHHh
Confidence 88877553
No 157
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=81.83 E-value=7.1 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCc---eEeeechhHHHHHHhhcc
Q 014219 158 RQATEDAATQCGLQ---VLKIIAEPTAAAIAYGLD 189 (428)
Q Consensus 158 ~~~l~~a~~~ag~~---~v~~~~E~~Aaa~~~~~~ 189 (428)
.+.+++++.+.|++ .+.++.+.+|..++..+.
T Consensus 171 ~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~ 205 (206)
T PF00349_consen 171 VELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQ 205 (206)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT
T ss_pred chhHHHHHHHhcccCcceEEEEECCHHHhhhhhcC
Confidence 57889999999886 466889999988876543
No 158
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=81.62 E-value=1.8 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.7
Q ss_pred CceEEEEeccCceEEEEEEeCC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~ 26 (428)
.++++|||+|||++|+...+.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 5799999999999999999655
No 159
>PRK00292 glk glucokinase; Provisional
Probab=81.54 E-value=45 Score=30.91 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=30.9
Q ss_pred HHcCCceEeeechhHHHHHHhhccccc-cCCc-ccc--CceEEEEEEecCcceEEEEE
Q 014219 166 TQCGLQVLKIIAEPTAAAIAYGLDRQQ-QGGI-AAS--GVKNVLIFDLGGGTFDVSLL 219 (428)
Q Consensus 166 ~~ag~~~v~~~~E~~Aaa~~~~~~~~~-~~~~-~~~--~~~~~lvvDiG~~t~d~~~~ 219 (428)
+..|++.+.+..+..|++++....... .... ..+ ...+++++-+|.|-=-..++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~ 145 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLV 145 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEE
Confidence 345888899999999999986542100 0000 001 12567888887554433333
No 160
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=81.07 E-value=2.1 Score=34.12 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.3
Q ss_pred ceEEEEeccCceEEEEEEeCC
Q 014219 6 GVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~ 26 (428)
|.++|||+|+..+.+|+.+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 468999999999999999765
No 161
>PRK00047 glpK glycerol kinase; Provisional
Probab=80.32 E-value=1.8 Score=43.09 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.9
Q ss_pred ceEEEEeccCceEEEEEEeC
Q 014219 6 GVAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~ 25 (428)
+++||||+|||+++++..+.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 58999999999999998853
No 162
>PRK13331 pantothenate kinase; Reviewed
Probab=79.40 E-value=2.6 Score=37.50 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCCCCceEEEEeccCceEEEEEEeCCe
Q 014219 1 MAGKAGVAIGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 1 m~~~~~~~vgID~Gt~~~~va~~~~~~ 27 (428)
|+...+.++.||+|+|+++++++++++
T Consensus 2 ~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 2 MFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 666778999999999999999998654
No 163
>PRK07157 acetate kinase; Provisional
Probab=79.21 E-value=13 Score=35.46 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHH-HHHHHHhhcC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPK-LQQLLQDFFL 364 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~-l~~~l~~~~~ 364 (428)
.+++-.+.+|...|-......+- .+|.|++|||-+.... +++.+.+.+.
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~G---~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIGK---KIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCEEEECCccccCcHHHHHHHHhhcc
Confidence 35555666666666666665431 3799999999887766 9999999884
No 164
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=78.01 E-value=8.8 Score=35.11 Aligned_cols=71 Identities=18% Similarity=0.099 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCC------CCcCCCCChhhHHHhHHHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLG------KNLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~------~~v~~~~~p~~ava~Ga~~~ 385 (428)
.++++...+.+...+.....-. +++.|+|.|+.+..+.+.+.+++.+.. .++........+.+.||+.+
T Consensus 211 ~~~~~~~~~~la~~l~~l~~~~-----dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~ 285 (291)
T PRK05082 211 QALINRSAQAIARLIADLKATL-----DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALW 285 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHH
Confidence 3445555555555555555543 467899988887777777777776632 22344445567889999988
Q ss_pred HH
Q 014219 386 AA 387 (428)
Q Consensus 386 ~~ 387 (428)
+.
T Consensus 286 ~~ 287 (291)
T PRK05082 286 AQ 287 (291)
T ss_pred hc
Confidence 64
No 165
>PTZ00107 hexokinase; Provisional
Probab=76.66 E-value=55 Score=32.23 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCC--ceEeeechhHHHHHHhhccc
Q 014219 157 QRQATEDAATQCGL--QVLKIIAEPTAAAIAYGLDR 190 (428)
Q Consensus 157 ~~~~l~~a~~~ag~--~~v~~~~E~~Aaa~~~~~~~ 190 (428)
-.+.|++++.+-|+ ..+.++.+.+|..++..+..
T Consensus 196 V~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 196 VGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 36778889998887 46789999999998887765
No 166
>PRK10331 L-fuculokinase; Provisional
Probab=76.42 E-value=2.3 Score=42.09 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.7
Q ss_pred ceEEEEeccCceEEEEEEeC
Q 014219 6 GVAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~ 25 (428)
++++|||+|||++|++..+.
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR 21 (470)
T ss_pred ceEEEEecCCCceEEEEEcC
Confidence 47999999999999998853
No 167
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=76.21 E-value=67 Score=29.91 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCCC---hhhHHHhH
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHIN---ADEAVATG 381 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~~---p~~ava~G 381 (428)
++.|+|+||-+...++++.|.+.+. +.++..++. -+.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 5689999999999999999999652 445544332 23456666
No 168
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=75.23 E-value=3.9 Score=32.73 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=18.9
Q ss_pred CceEEEEeccCceEEEEEEeCC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~ 26 (428)
++.++|||+|+-.+.+|+.+..
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4679999999999999988543
No 169
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=74.80 E-value=17 Score=35.52 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCc---eEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEe
Q 014219 155 DSQRQATEDAATQCGLQ---VLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIE 222 (428)
Q Consensus 155 ~~~~~~l~~a~~~ag~~---~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~ 222 (428)
..-.+.+++++++-|++ .+-++...++..++..+... +..+-|=+|.||=-+.+.+..
T Consensus 191 ~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~----------~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 191 EDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP----------NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC----------CcEEEEEECCCccceeeeecc
Confidence 34477899999999986 46678888888887766653 456666678777666666554
No 170
>PLN02596 hexokinase-like
Probab=74.37 E-value=15 Score=36.26 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCC--ceEeeechhHHHHHHhhccc
Q 014219 156 SQRQATEDAATQCGL--QVLKIIAEPTAAAIAYGLDR 190 (428)
Q Consensus 156 ~~~~~l~~a~~~ag~--~~v~~~~E~~Aaa~~~~~~~ 190 (428)
.-.+.|++++.+-|+ +.+.++...++..++..+..
T Consensus 206 Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~ 242 (490)
T PLN02596 206 ALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN 242 (490)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC
Confidence 336678888888786 46789999999888877664
No 171
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=73.66 E-value=3.2 Score=41.60 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.3
Q ss_pred ceEEEEeccCceEEEEEEeCC
Q 014219 6 GVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~ 26 (428)
++++|||+|||++|++..+.+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 489999999999999998543
No 172
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.41 E-value=65 Score=28.46 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCCCCCcCcceEEeecccceeeeEEcCCccc
Q 014219 380 TGAAIQAAILSGVCSDKAEDLVILDLKPCSHEPKIATGSNP 420 (428)
Q Consensus 380 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (428)
.|-|+++-.+++. .++++.+++..++.+.+.+|++.
T Consensus 141 lgiay~a~~~~g~-----ed~VvsDiSSNTVtllvkdGkvi 176 (332)
T COG4020 141 LGIAYLAYLLSGS-----EDFVVSDISSNTVTLLVKDGKVI 176 (332)
T ss_pred hhHHHHHHHHcCc-----cceEEEeccCCeEEEEEEcCeEe
Confidence 6889999999995 78999999999999999998763
No 173
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=73.21 E-value=3.6 Score=41.12 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.8
Q ss_pred eEEEEeccCceEEEEEEeCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~ 26 (428)
+++|||+|||++|++..+.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 89999999999999998543
No 174
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=1.1e+02 Score=30.60 Aligned_cols=210 Identities=18% Similarity=0.110 Sum_probs=104.3
Q ss_pred cCCc-eEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 014219 168 CGLQ-VLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRM 246 (428)
Q Consensus 168 ag~~-~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l 246 (428)
.+++ .+.++....|-|.++...... ...-++++|-.|--..-++....++.+..+.......-=|... ..|
T Consensus 110 ~~~~~kv~~~eHH~aHAasAf~~SpF-------~~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY-~~~ 181 (555)
T COG2192 110 KGLPVKVLFVEHHLAHAASAFFTSPF-------EEALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFY-AAF 181 (555)
T ss_pred ccCccceeechHHHHHHHHHhcCCCc-------ccceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHH-HHH
Confidence 3455 577777777777554433322 1467889997776666666666667766666654433222222 244
Q ss_pred HHHHHHHHHhh-hC---CCCCCCHHHHHHHHHHHHHHHHH---------hcc-CCceeEEEee-cccC-cceeEEeeHHH
Q 014219 247 VDYFVEEFKRK-NK---IDISGNARALHRLRIACESAKRT---------LSS-TIQTSIEIDY-LYEG-INFSSTITRAR 310 (428)
Q Consensus 247 ~~~l~~~~~~~-~~---~~~~~~~~~~~~l~~~~e~~K~~---------l~~-~~~~~~~~~~-~~~~-~~~~~~i~~~~ 310 (428)
.+++-=+-... ++ ...-..+.....+....++ |+. +.. ..-..+.+.. +... .....+....+
T Consensus 182 T~~lGf~~n~~EgKvMgLAaYG~p~y~~~~~d~l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~d 260 (555)
T COG2192 182 TELLGFKPNSDEGKVMGLAAYGDPNYDLSLLDLLRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAAD 260 (555)
T ss_pred HHHhCCCCCCCCccEEEeeccCCcccchHHHHHHhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHH
Confidence 44431110000 00 0001111111222222222 100 000 0000111000 0000 01123344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHH-HHHHhhcCCCCcCCCCCh-hhHHHhHHHHHHHH
Q 014219 311 FEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQ-QLLQDFFLGKNLCRHINA-DEAVATGAAIQAAI 388 (428)
Q Consensus 311 ~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~-~~l~~~~~~~~v~~~~~p-~~ava~Ga~~~~~~ 388 (428)
+...++-..+++.-.+.+.+.+... .+.+.++||-+..--.. +.+.+.+ ...+.+++.+ +...|.|||+++..
T Consensus 261 iAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAAl~~~~ 335 (555)
T COG2192 261 IAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAALAVKR 335 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHHHHHHH
Confidence 6666666676666665555554321 45899999988776666 5555555 5566555544 46799999999998
Q ss_pred hcC
Q 014219 389 LSG 391 (428)
Q Consensus 389 ~~~ 391 (428)
..+
T Consensus 336 ~~~ 338 (555)
T COG2192 336 ELG 338 (555)
T ss_pred Hhc
Confidence 866
No 175
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=72.51 E-value=3.6 Score=40.60 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.6
Q ss_pred eEEEEeccCceEEEEEEeCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~ 26 (428)
+++|||+|||++|++..+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 68999999999999999543
No 176
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=72.23 E-value=15 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 014219 144 NAVITVPAYFSDSQRQATEDAATQCGLQV 172 (428)
Q Consensus 144 ~~vitvP~~~~~~~~~~l~~a~~~ag~~~ 172 (428)
.-.++.|+.++..+|..+.+.+...|+..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 55788999999999999999999999865
No 177
>PRK04123 ribulokinase; Provisional
Probab=70.97 E-value=4.6 Score=40.85 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.7
Q ss_pred ceEEEEeccCceEEEEEEe
Q 014219 6 GVAIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~ 24 (428)
++++|||+|||++|++..+
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 5899999999999999997
No 178
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=70.77 E-value=95 Score=29.20 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCcCc-HHHHHHHH---hhc--CCCCcCCCCChhhHHHhHHHHHH
Q 014219 339 AVDDVVIVGGSSRI-PKLQQLLQ---DFF--LGKNLCRHINADEAVATGAAIQA 386 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~-~~l~~~l~---~~~--~~~~v~~~~~p~~ava~Ga~~~~ 386 (428)
.++.|+++|.+-+. |..++.+. ..+ +..+..-..+..+.-|.||.+..
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 46799999998864 77888887 434 34566778899999999998753
No 179
>PRK15027 xylulokinase; Provisional
Probab=70.54 E-value=3.9 Score=40.59 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=16.8
Q ss_pred eEEEEeccCceEEEEEEeC
Q 014219 7 VAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~ 25 (428)
++||||+||+++|++..+.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 4799999999999998854
No 180
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=70.50 E-value=3.9 Score=38.66 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.3
Q ss_pred ceEEEEeccCceEEEEEEeCCe
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~ 27 (428)
++++|||+|++.+++++.+++.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4899999999999999997653
No 181
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=70.29 E-value=4.3 Score=40.39 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=17.9
Q ss_pred ceEEEEeccCceEEEEEEeCC
Q 014219 6 GVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~ 26 (428)
.+++|||+|||+++++..+.+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred CeEEEEecCCCceEEEEECCC
Confidence 368999999999999988533
No 182
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=69.85 E-value=93 Score=28.73 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhc
Q 014219 320 EKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFF 363 (428)
Q Consensus 320 ~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~ 363 (428)
+.+.+.+.+.+++. .++.|+|+||-++..++++.+.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33344445555442 3678999999999999999999987
No 183
>PRK12379 propionate/acetate kinase; Provisional
Probab=69.44 E-value=25 Score=33.56 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFL 364 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~ 364 (428)
.+++-.+.+|...|-......+ .+|.|+||||-+ +.+.+|+.+.+.+.
T Consensus 295 lA~d~f~yri~k~IGa~~a~L~----~vDaIVFTGGIGen~~~vR~~i~~~L~ 343 (396)
T PRK12379 295 LAIKTFVHRIARHIAGHAASLH----RLDGIIFTGGIGENSSLIRRLVMEHLA 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3555566666666666665543 489999999955 56888999988874
No 184
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=69.28 E-value=14 Score=34.27 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCCC---hhhHHHhHHH
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHIN---ADEAVATGAA 383 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~~---p~~ava~Ga~ 383 (428)
+.+.+...+++ ..++.|+|+||-+...++++.|.+.+. +.++..++. -+.+++.|++
T Consensus 247 l~~~~~~~~~~-----~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKK-----TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHH-----hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 33444444444 245689999999999999999999873 234443332 2355666654
No 185
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=69.08 E-value=5 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=17.0
Q ss_pred eEEEEeccCceEEEEEEe
Q 014219 7 VAIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~ 24 (428)
+++|||+||+++|+++.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 689999999999999997
No 186
>PLN02295 glycerol kinase
Probab=68.69 E-value=4.6 Score=40.42 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.7
Q ss_pred eEEEEeccCceEEEEEEeC
Q 014219 7 VAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~ 25 (428)
+++|||+|||++|++..+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 4799999999999998853
No 187
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=68.05 E-value=4.8 Score=40.23 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.8
Q ss_pred eEEEEeccCceEEEEEEeC
Q 014219 7 VAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~ 25 (428)
+++|||+|||++|++..+.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 4799999999999998854
No 188
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=67.17 E-value=6.6 Score=31.43 Aligned_cols=21 Identities=29% Similarity=0.169 Sum_probs=18.5
Q ss_pred ceEEEEeccCceEEEEEEeCC
Q 014219 6 GVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~ 26 (428)
+.++|+|+|+-.+.+|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 679999999999999988554
No 189
>PRK09604 UGMP family protein; Validated
Probab=65.95 E-value=1.2e+02 Score=28.46 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcC--CCCcCCCCC---hhhHHHhHHHHHHHHhcC
Q 014219 339 AVDDVVIVGGSSRIPKLQQLLQDFFL--GKNLCRHIN---ADEAVATGAAIQAAILSG 391 (428)
Q Consensus 339 ~i~~Vvl~GG~s~~~~l~~~l~~~~~--~~~v~~~~~---p~~ava~Ga~~~~~~~~~ 391 (428)
.++.|+|+||-++..++++.|.+.++ +.++..++. -+.+++.|++=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999884 345544443 356788888766666665
No 190
>PRK13322 pantothenate kinase; Reviewed
Probab=65.76 E-value=42 Score=29.90 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=16.5
Q ss_pred EEEEeccCceEEEEEEeC
Q 014219 8 AIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~ 25 (428)
++.||.|+|+++.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 789999999999999875
No 191
>PRK13328 pantothenate kinase; Reviewed
Probab=65.72 E-value=38 Score=30.32 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=17.3
Q ss_pred eEEEEeccCceEEEEEEeCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~ 26 (428)
+++-||.|+|.+|.++.+.+
T Consensus 2 M~LliDiGNTriKwa~~~~~ 21 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADAG 21 (255)
T ss_pred cEEEEEeCccceeEEEEcCC
Confidence 58999999999999988643
No 192
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=64.61 E-value=9.8 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=0.0
Q ss_pred EEEEeccCceEEEEEE--eCCeeEEE
Q 014219 8 AIGIDLGTTYSCVAVW--QHDKVEII 31 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~--~~~~~~~i 31 (428)
++|||.|++++..|+. .++.+.++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEE
No 193
>PLN02669 xylulokinase
Probab=64.56 E-value=7.2 Score=39.46 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.9
Q ss_pred CceEEEEeccCceEEEEEEeCC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~ 26 (428)
..++||||+||+.+|+++.+.+
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCC
Confidence 4689999999999999988533
No 194
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=64.47 E-value=16 Score=34.72 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHcCC-----ccCeEEE-----EeCCCCCHHHHHHHHHHHHHcC-C----ceEeeechhHHHHHHhh
Q 014219 123 SSMVLKKKREIAEAFVGT-----AVTNAVI-----TVPAYFSDSQRQATEDAATQCG-L----QVLKIIAEPTAAAIAYG 187 (428)
Q Consensus 123 ~~~~l~~l~~~~~~~~~~-----~~~~~vi-----tvP~~~~~~~~~~l~~a~~~ag-~----~~v~~~~E~~Aaa~~~~ 187 (428)
.+.-|+.|.+.|+..... ++..+-- ..|-.-.+.--+..++.++... + +.|.+++-..--.+++.
T Consensus 119 aA~Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWi 198 (453)
T KOG1385|consen 119 AANSLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWI 198 (453)
T ss_pred HHHhHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeee
Confidence 455677888888776532 2222211 1233333333445555555221 2 44666654433333332
Q ss_pred ccccccCCccccCceEEEEEEecCcceEEEEEE
Q 014219 188 LDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLA 220 (428)
Q Consensus 188 ~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~ 220 (428)
.-.-....+.......+.++|+|||+|.++..-
T Consensus 199 TiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 199 TINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 211111111112256789999999999999765
No 195
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=64.45 E-value=1.1e+02 Score=27.39 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred eEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCCChhhh
Q 014219 7 VAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFSDVSVQ 86 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~ 86 (428)
+++|||+|.+++++++.+.....+............
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~~~~~-------------------------------------------- 36 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTPREDY-------------------------------------------- 36 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCCCcCH--------------------------------------------
Q ss_pred hhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcC--CccCeEEEEeCCCCCHHH-------
Q 014219 87 SDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVG--TAVTNAVITVPAYFSDSQ------- 157 (428)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~--~~~~~~vitvP~~~~~~~------- 157 (428)
..++..+.+...+... .....+.+++|-......
T Consensus 37 -------------------------------------~~~~~~i~~~i~~~~~~~~~~~gIgv~~pG~vd~~~g~i~~~~ 79 (256)
T PRK13311 37 -------------------------------------PQLLQILRDLTEEADTYCGVQGSVGIGIPGLPNADDGTVFTAN 79 (256)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHhhcCCCceEEEEecCcEECCCCEEEccC
Q ss_pred ---------HHHHHHHHHHcCCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCc
Q 014219 158 ---------RQATEDAATQCGLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGG 212 (428)
Q Consensus 158 ---------~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~ 212 (428)
++.+++.+ +++ +.+..+..|+|++....... +..++++.+-+|.|
T Consensus 80 ~~~w~~~~l~~~l~~~~---~~p-V~leNDanaaAlaE~~~g~~------~~~~~~v~i~lgtG 133 (256)
T PRK13311 80 VPSAMGQPLQADLSRLI---QRE-VRIDNDANCFALSEAWDPEF------RTYPTVLGLILGTG 133 (256)
T ss_pred CCcccCCChHHHHHHHH---CCC-EEEEchhhHHHHHHHHhcCC------CCCCcEEEEEECcC
No 196
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.27 E-value=35 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 014219 144 NAVITVPAYFSDSQRQATEDAATQCGLQV 172 (428)
Q Consensus 144 ~~vitvP~~~~~~~~~~l~~a~~~ag~~~ 172 (428)
.-.++.|+.++..+|..+.++++..|+..
T Consensus 17 ~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 17 IRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred cceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 55788999999999999999999999865
No 197
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=62.73 E-value=7.1 Score=39.39 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.2
Q ss_pred EEEEeccCceEEEEEEeC
Q 014219 8 AIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~ 25 (428)
++|||+|||++|++..+.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 689999999999999853
No 198
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=62.31 E-value=37 Score=30.46 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhc----C----CCCcCCC--CChhhHHHhHHHHHHHHhcC
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFF----L----GKNLCRH--INADEAVATGAAIQAAILSG 391 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~----~----~~~v~~~--~~p~~ava~Ga~~~~~~~~~ 391 (428)
..++.|+|+|-++++|-+-.-+++.+ . +..|... .--.--.|.|||+.|....|
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 45679999999999876654444444 1 2222221 11222367888888876655
No 199
>PRK12397 propionate kinase; Reviewed
Probab=61.65 E-value=34 Score=32.74 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcC-CcCcHHHHHHHHhhcC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGG-SSRIPKLQQLLQDFFL 364 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG-~s~~~~l~~~l~~~~~ 364 (428)
.+++-.+.++...|-...... ..+|.|++||| +=+++.+|+.+.+.+.
T Consensus 299 lA~d~f~yri~k~IGa~~a~l----ggvDaiVFTGGIGEns~~vR~~ic~~L~ 347 (404)
T PRK12397 299 LALTLFAERIRATIGSYIMQM----GGLDALVFTGGIGENSARARSAVCHNLQ 347 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCCEEEECCchhhCCHHHHHHHHhhhh
Confidence 345556666666666655553 34899999999 4567999999998884
No 200
>PRK13331 pantothenate kinase; Reviewed
Probab=61.49 E-value=81 Score=28.18 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=14.3
Q ss_pred eEEEEcCCcCcHHHHHHHHhh
Q 014219 342 DVVIVGGSSRIPKLQQLLQDF 362 (428)
Q Consensus 342 ~Vvl~GG~s~~~~l~~~l~~~ 362 (428)
.|++|||.+. .+...++..
T Consensus 206 ~vi~TGG~a~--~l~~~~~~~ 224 (251)
T PRK13331 206 KIVLTGGDGE--LLHNYLQDL 224 (251)
T ss_pred EEEEECCCHH--HHHHHhhcc
Confidence 7999999885 666666554
No 201
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=61.25 E-value=93 Score=25.71 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCceEeeechhHHHHHHhhccccccCCccccCceEEEEEEecCcceEEEEEE
Q 014219 169 GLQVLKIIAEPTAAAIAYGLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLA 220 (428)
Q Consensus 169 g~~~v~~~~E~~Aaa~~~~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~ 220 (428)
++ ++.+..+..|+|++....... ....+++.+-+|.| .-.+++.
T Consensus 92 ~~-pv~i~Nd~~~~a~ae~~~~~~------~~~~~~~~l~ig~G-iG~~ii~ 135 (179)
T PF00480_consen 92 GV-PVIIENDANAAALAEYWFGAA------KDCDNFLYLYIGTG-IGAGIII 135 (179)
T ss_dssp TS-EEEEEEHHHHHHHHHHHHSTT------TTTSSEEEEEESSS-EEEEEEE
T ss_pred ce-EEEEecCCCcceeehhhcCcc------CCcceEEEEEeecC-CCcceec
Confidence 44 568889999998887653322 12456788888875 4455543
No 202
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=58.49 E-value=2.9 Score=40.34 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=41.2
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcCC-----------CCcC---CCCChhhHHHhHHHHHHHHhcC
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFLG-----------KNLC---RHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~~-----------~~v~---~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.+.|.++||+...|++.+.|+++.-+ +.|+ +..||...+..|||+++.....
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~ 592 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFV 592 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHH
Confidence 47899999999999999999988731 1232 3369999999999999977544
No 203
>PRK13320 pantothenate kinase; Reviewed
Probab=58.16 E-value=14 Score=32.93 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.7
Q ss_pred eEEEEeccCceEEEEEEeCCe
Q 014219 7 VAIGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~~ 27 (428)
+++.||+|+|+++.++++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 699999999999999998653
No 204
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=57.21 E-value=11 Score=31.18 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.2
Q ss_pred ceEEEEeccCceEEEEEEe
Q 014219 6 GVAIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~ 24 (428)
+.++|||-|++++..++.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 5799999999999999874
No 205
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=57.06 E-value=83 Score=30.72 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=28.5
Q ss_pred EEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 014219 207 FDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEFK 255 (428)
Q Consensus 207 vDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~ 255 (428)
+|||+.+|.++.+...+..+...+...+...= .++..-|.+...+++.
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~ 48 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLN 48 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHH
Confidence 59999999999997776655555554431221 3555553333334443
No 206
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=56.81 E-value=45 Score=30.08 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=46.8
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhh-cCCCCcCCCCChhhH
Q 014219 304 STITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDF-FLGKNLCRHINADEA 377 (428)
Q Consensus 304 ~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~-~~~~~v~~~~~p~~a 377 (428)
-.++.++|++..-|.+.+|.+.+++.+.+.+.. .+..|++.-|+. +.-+.+... +.-....++.||.++
T Consensus 218 geLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g---~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 218 GELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSG---GALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred ccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcc---hHHHHHHhcCCcEEeecccccHHHH
Confidence 367889999999999999999999999987554 356777776665 333444333 211233455566554
No 207
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=56.41 E-value=38 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=26.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 014219 143 TNAVITVPAYFSDSQRQATEDAATQCGLQV 172 (428)
Q Consensus 143 ~~~vitvP~~~~~~~~~~l~~a~~~ag~~~ 172 (428)
..-.++.|+.+++.+|+.+...|...|+..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 355677899999999999999999999865
No 208
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=56.30 E-value=30 Score=33.41 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQ 357 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~ 357 (428)
+++-+.+++.|.+++.+.+.+.+..+.++..++++|-..-.-.+..
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllG 101 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLG 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcC
Confidence 3444556778888899999999888888999999997765544443
No 209
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=55.10 E-value=18 Score=35.73 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=17.8
Q ss_pred ceEEEEeccCceEEEEEEe
Q 014219 6 GVAIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~ 24 (428)
..++|||.||+.+++++.+
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 6899999999999999986
No 210
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=53.98 E-value=24 Score=28.58 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=13.5
Q ss_pred EEEEeccCceEEEEEEe
Q 014219 8 AIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~ 24 (428)
++|||-|++++..++.+
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 69999999999999884
No 211
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=52.47 E-value=25 Score=30.35 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.7
Q ss_pred CceEEEEEEecCcceEEEEEEEeCC
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIENG 224 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~~~ 224 (428)
+.+.++++|+||.++-++.+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 4678999999999999999999876
No 212
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=52.43 E-value=62 Score=29.60 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=50.6
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEeecccceeeeEEcCCcc
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILDLKPCSHEPKIATGSN 419 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (428)
+..|++-|=...++++-.+++..| .+...|.- .|.||.+....+ .+++++.+++..++-+.+.+|++
T Consensus 103 ipav~iPGlH~~~~~~D~rfra~y-----SH~aSpEK---i~iay~a~~~~~-----~~~~ivsDiSSNTVtlaVk~GKI 169 (326)
T TIGR03281 103 IPAVLIPGLHRGSPCLDPRFRAVY-----SHIASPEK---VSIAYNAYCLTG-----FKDFIVSDISSNTVTLLIKDGKI 169 (326)
T ss_pred CCEEEcccccCCCcccCHHHHHHh-----cccCCHHH---HHHHHHHHHHcC-----CCCEEEEecCCCeEEEEEECCEE
Confidence 447777777777777777777666 22223332 678888888777 47899999999999999999987
Q ss_pred c
Q 014219 420 P 420 (428)
Q Consensus 420 ~ 420 (428)
+
T Consensus 170 V 170 (326)
T TIGR03281 170 I 170 (326)
T ss_pred E
Confidence 4
No 213
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=51.86 E-value=69 Score=30.83 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=23.2
Q ss_pred CceEEEEEEecCcceEEEEEEEe-CCeEE
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIE-NGVIR 227 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~-~~~~~ 227 (428)
+...++++|+||..+-++.+++. ++.++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~ 101 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFD 101 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcc
Confidence 46789999999999999999998 34443
No 214
>PRK13320 pantothenate kinase; Reviewed
Probab=49.06 E-value=66 Score=28.59 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=9.0
Q ss_pred eEEEEcCCcC
Q 014219 342 DVVIVGGSSR 351 (428)
Q Consensus 342 ~Vvl~GG~s~ 351 (428)
.|++|||.+.
T Consensus 206 ~vi~TGG~a~ 215 (244)
T PRK13320 206 LVILTGGDAP 215 (244)
T ss_pred EEEEECCCHH
Confidence 7999999986
No 215
>PRK13324 pantothenate kinase; Reviewed
Probab=48.91 E-value=80 Score=28.35 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=17.2
Q ss_pred EEEEeccCceEEEEEEeCC
Q 014219 8 AIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~ 26 (428)
++.||+|+|+++.++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 7899999999999999754
No 216
>PRK13324 pantothenate kinase; Reviewed
Probab=48.22 E-value=21 Score=31.98 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=20.2
Q ss_pred eEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHH
Q 014219 342 DVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 342 ~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
.|++|||.+. .+.. . ......+|.. +-.|..+++..
T Consensus 217 ~vi~TGG~a~--~~~~-----~---~~~~~~~~~L-vL~GL~~i~~~ 252 (258)
T PRK13324 217 YTIATGGFAG--LFKE-----E---DIFNEISPDL-ILRGIRIAFLE 252 (258)
T ss_pred EEEEECCChH--Hhcc-----c---CCcceECcCh-HHHHHHHHHHH
Confidence 7999999985 2311 1 1111223433 66788777655
No 217
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=48.18 E-value=67 Score=21.37 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 014219 144 NAVITVPAYFSDSQRQATEDAATQCGLQV 172 (428)
Q Consensus 144 ~~vitvP~~~~~~~~~~l~~a~~~ag~~~ 172 (428)
...+..|+.++..+|..+.++++..|+..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 35788999999999999999999999865
No 218
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=47.83 E-value=13 Score=29.33 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.9
Q ss_pred EEEeccCceEEEEEEeC
Q 014219 9 IGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~ 25 (428)
+|||+|+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999997754
No 219
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=46.59 E-value=2.3e+02 Score=25.87 Aligned_cols=81 Identities=25% Similarity=0.186 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCeEEEEcC-CcCcHHHHHHHHhhcCCC---CcCCCCChhhHHHhHHHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTA--VDDVVIVGG-SSRIPKLQQLLQDFFLGK---NLCRHINADEAVATGAAIQ 385 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~--i~~Vvl~GG-~s~~~~l~~~l~~~~~~~---~v~~~~~p~~ava~Ga~~~ 385 (428)
.++|...-+.+...+..++.+......+ .-.|+++|| +.....+++-....+... +-.....|...-|.|||++
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~l 313 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAIL 313 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHH
Confidence 3455555555666677777765543322 458999999 455566665554444221 1234446778899999999
Q ss_pred HHHhcCC
Q 014219 386 AAILSGV 392 (428)
Q Consensus 386 ~~~~~~~ 392 (428)
|+.+.+.
T Consensus 314 aa~~~~~ 320 (336)
T KOG1794|consen 314 AASLDNI 320 (336)
T ss_pred hhhhccc
Confidence 9998773
No 220
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.17 E-value=21 Score=31.38 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCcCcHH---HHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh-cC
Q 014219 338 TAVDDVVIVGGSSRIPK---LQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL-SG 391 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~---l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~-~~ 391 (428)
...+.|+|.|--+.... +...|+.+..+. + ..-|.++.+.|.|+.++-. +|
T Consensus 267 ~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k-~--~~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 267 YGCDGVVLAGSVGGDREPMDVLKRIKSKVFNK-V--AVLPPESAAIGLALIARDIASG 321 (332)
T ss_pred cCCceEEEecccccccchhhHHHHHHHHHHHH-H--hhcCchhhhhhhHHHHHHHHcC
Confidence 56788999998887777 666666655222 1 1233445788888877654 44
No 221
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=45.74 E-value=27 Score=30.06 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.0
Q ss_pred EEEEeccCceEEEEEEeCCee
Q 014219 8 AIGIDLGTTYSCVAVWQHDKV 28 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~~ 28 (428)
++.||+|+|+++.++.+++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 578999999999999977743
No 222
>PRK13321 pantothenate kinase; Reviewed
Probab=44.63 E-value=1e+02 Score=27.63 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=15.7
Q ss_pred EEEEEecCcceEEEEEE
Q 014219 204 VLIFDLGGGTFDVSLLA 220 (428)
Q Consensus 204 ~lvvDiG~~t~d~~~~~ 220 (428)
++.+|+|++++.++++.
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 47899999999999998
No 223
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.43 E-value=69 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 014219 144 NAVITVPAYFSDSQRQATEDAATQCGLQV 172 (428)
Q Consensus 144 ~~vitvP~~~~~~~~~~l~~a~~~ag~~~ 172 (428)
.-.++.|+ ++..+|..+.+.+...|+..
T Consensus 16 ~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 16 RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 44678898 89999999999999988754
No 224
>PLN02377 3-ketoacyl-CoA synthase
Probab=43.34 E-value=68 Score=31.94 Aligned_cols=55 Identities=9% Similarity=0.176 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-EcCCcCcHHHHHHHHhhcC
Q 014219 310 RFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVI-VGGSSRIPKLQQLLQDFFL 364 (428)
Q Consensus 310 ~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl-~GG~s~~~~l~~~l~~~~~ 364 (428)
.++...++..+-+...+++++++.+.++.+|+.|++ +.+....|.+...|.++++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 345555666666778889999999999899999988 4555568999999999994
No 225
>PLN02902 pantothenate kinase
Probab=42.62 E-value=1.7e+02 Score=31.12 Aligned_cols=51 Identities=10% Similarity=-0.148 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCcCc-HHHHHHHHhhc----C-CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 338 TAVDDVVIVGGSSRI-PKLQQLLQDFF----L-GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~-~~l~~~l~~~~----~-~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
..++.|+++|.+-+- +...+.|...+ + ..+.....+-.+.-|.||.+....
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 457899999997553 23333333333 2 346666777788899999876644
No 226
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=40.37 E-value=68 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.1
Q ss_pred EEEEEecCcceEEEEEEEeCC
Q 014219 204 VLIFDLGGGTFDVSLLAIENG 224 (428)
Q Consensus 204 ~lvvDiG~~t~d~~~~~~~~~ 224 (428)
++.+|+|+..+-++++.....
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred EEEEccCCCeEEEEEECCCCC
Confidence 689999999999998864433
No 227
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=38.63 E-value=1.8e+02 Score=28.61 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.1
Q ss_pred CceEEEEEEecCcceEEEEEEEeCCe
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIENGV 225 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~~~~ 225 (428)
+...++.+|+||..+-+..+.++++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 46779999999999999999998773
No 228
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=38.02 E-value=1.6e+02 Score=27.13 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=35.0
Q ss_pred ceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 014219 201 VKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFNNRMVDYFVEEF 254 (428)
Q Consensus 201 ~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~ 254 (428)
...++.+|+|+.++.++++......+..........-....+.+.+.+.+.+.+
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 58 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELL 58 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHH
Confidence 567899999999999999988766544444433233322455666655554433
No 229
>PRK13318 pantothenate kinase; Reviewed
Probab=36.54 E-value=1.6e+02 Score=26.33 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.7
Q ss_pred EEEEEecCcceEEEEEE
Q 014219 204 VLIFDLGGGTFDVSLLA 220 (428)
Q Consensus 204 ~lvvDiG~~t~d~~~~~ 220 (428)
++.+|+|++.+.++++.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 57899999999999998
No 230
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=35.23 E-value=3e+02 Score=24.52 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=44.0
Q ss_pred HHHHHHHHHhccCCceeEEEeecccCcceeEEeeHHHHHHHHHHHHHHHH-----------HHHHHHHHHcCCCCCCCCe
Q 014219 274 IACESAKRTLSSTIQTSIEIDYLYEGINFSSTITRARFEQLNMDLFEKCI-----------EHVDTCLAKAKIDRTAVDD 342 (428)
Q Consensus 274 ~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~-----------~~i~~~l~~~~~~~~~i~~ 342 (428)
..++.+.+.-.......+.+-..++| |+++.++++.+++.+. +.+.+.|...+. .++|.
T Consensus 121 ~~i~~~e~~t~~~~~~~l~~a~nYGG--------R~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~~~~--pdpDL 190 (245)
T COG0020 121 EAIEKAEEKTKNNTGLTLNIAVNYGG--------RDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYTSGL--PDPDL 190 (245)
T ss_pred HHHHHHHHhccCCCceEEEEeeCCCC--------HHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcccCC--CCCCE
Confidence 33444433333445555666666666 7888888888887763 233344443222 37899
Q ss_pred EEEEcCCcCcHHH
Q 014219 343 VVIVGGSSRIPKL 355 (428)
Q Consensus 343 Vvl~GG~s~~~~l 355 (428)
++=|||--++..+
T Consensus 191 lIRTsGe~RlSnF 203 (245)
T COG0020 191 LIRTSGEQRLSNF 203 (245)
T ss_pred EEeCCCccccccc
Confidence 9999997776544
No 231
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=35.01 E-value=2.4e+02 Score=24.55 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=32.1
Q ss_pred EEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 343 VVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 343 Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
+++.|+++- ..+++.|++.| |.+|+-+--..-..+.|++..+...+.
T Consensus 177 aIiLGCAGm-s~la~~Lq~~~-gvPVIDgv~Aav~~a~~L~~~~~~tsk 223 (230)
T COG4126 177 AIILGCAGM-SDLADQLQKAF-GVPVIDGVAAAVKLAEGLLGMGLSTSK 223 (230)
T ss_pred EEEEcCccH-HHHHHHHHHHh-CCCcccchHHHHHHHHHHHhhchhhhh
Confidence 444454443 35699999999 788876666666677777777666554
No 232
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=34.94 E-value=46 Score=24.90 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHH
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVA 379 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava 379 (428)
+..++|+||..-.+.+.+..++. +.++..++...+.+|
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~--~i~vi~t~~dtf~ta 99 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKEL--GIPVISTPYDTFETA 99 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHH--T-EEEE-SS-HHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHC--CCEEEEECCCHHHHH
Confidence 67999999999999999999988 588777766555444
No 233
>PTZ00107 hexokinase; Provisional
Probab=34.82 E-value=1.4e+02 Score=29.39 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.9
Q ss_pred CceEEEEEEecCcceEEEEEEEeCC
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIENG 224 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~~~ 224 (428)
+...++.+|+||+++-++.+++.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 3666999999999999999999754
No 234
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=34.37 E-value=19 Score=35.33 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.9
Q ss_pred EEEeccCceEEEEEEeC
Q 014219 9 IGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~ 25 (428)
+|||+|||++|++....
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998843
No 235
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=34.26 E-value=39 Score=28.29 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=15.8
Q ss_pred EEEeccCceEEEEEEeCC
Q 014219 9 IGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~~ 26 (428)
||||.|.|+|-+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 899999999988888665
No 236
>PLN02854 3-ketoacyl-CoA synthase
Probab=34.13 E-value=1.2e+02 Score=30.46 Aligned_cols=54 Identities=9% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-EcCCcCcHHHHHHHHhhcC
Q 014219 311 FEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVI-VGGSSRIPKLQQLLQDFFL 364 (428)
Q Consensus 311 ~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl-~GG~s~~~~l~~~l~~~~~ 364 (428)
+++.-++.-.-+...+.+.+++.+.++.+|+.||+ +.+....|.+...|.++++
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 44444445555667788889999998899999987 4555568999999999994
No 237
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=33.86 E-value=43 Score=32.61 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.6
Q ss_pred CceEEEEeccCceEEEEEEeC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~ 25 (428)
.+++++||-|||++++.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 589999999999999988843
No 238
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=33.85 E-value=75 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=0.0
Q ss_pred ceEEEEeccCceEEEEEEe--CCeeEEE
Q 014219 6 GVAIGIDLGTTYSCVAVWQ--HDKVEII 31 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~--~~~~~~i 31 (428)
+.+++||+|+-|-..+..+ ++.+.++
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~ 28 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVI 28 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEE
No 239
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=33.49 E-value=41 Score=33.29 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.1
Q ss_pred ceEEEEeccCceEEEEEEeC
Q 014219 6 GVAIGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~ 25 (428)
.+.|||||||..-++++.+-
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~ 22 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDC 22 (544)
T ss_pred cEEEEEeecCCceeEEEEEc
Confidence 68999999999999999953
No 240
>PRK13322 pantothenate kinase; Reviewed
Probab=33.05 E-value=43 Score=29.84 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHH
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
+.+..-.+..+...++..+++.......--.|++|||.+. .+...+.. ... +|. -+-.|+..++.
T Consensus 179 ~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vilTGG~a~--~l~~~l~~------~~~--~~~-LvL~GL~~~~~ 243 (246)
T PRK13322 179 DAVERGCLLMLRGFIESQLEQARELWGPDFEIFLTGGDAP--LLADHLPQ------ARV--VPD-LVFVGLAQYCP 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhCCC------CEE--CCC-cHHHHHHHHHh
Confidence 3333444444444444444432211111137999999985 34433322 111 332 36677766553
No 241
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=32.87 E-value=3.4e+02 Score=24.81 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-EcCCcCcHHHHHHHHhhcC
Q 014219 311 FEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVI-VGGSSRIPKLQQLLQDFFL 364 (428)
Q Consensus 311 ~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl-~GG~s~~~~l~~~l~~~~~ 364 (428)
++...++.-.-+...+++.+++.+.++.+|+.+|+ +..++..|.|-.+|.++|+
T Consensus 76 ~~~a~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 76 LAAAREEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 33344444445567888999999999989987654 6678999999999999994
No 242
>PLN03170 chalcone synthase; Provisional
Probab=32.40 E-value=1.9e+02 Score=27.87 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=40.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcC
Q 014219 310 RFEQLNMD-LFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFL 364 (428)
Q Consensus 310 ~~~~~~~~-~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~ 364 (428)
+-.+++.. ..+--.+..+++|++.+.+..+|++|+++-.+. ..|.+.-.|.+.++
T Consensus 97 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 97 ARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 33344433 344445678899999998889999987765433 68999999999994
No 243
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=32.33 E-value=94 Score=29.39 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.1
Q ss_pred EEEEEecCcceEEEEEEEeCCeEEEE
Q 014219 204 VLIFDLGGGTFDVSLLAIENGVIRVR 229 (428)
Q Consensus 204 ~lvvDiG~~t~d~~~~~~~~~~~~~~ 229 (428)
++|++.|++++.+++++.....++..
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~ 27 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEET 27 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeee
Confidence 79999999999999998766554433
No 244
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=32.20 E-value=88 Score=27.53 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhc
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFF 363 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~ 363 (428)
++.+.+.+.|.+.+.+.+++.+ .-.|.|+||++-.+.++...+..+
T Consensus 7 ~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~~i 52 (233)
T TIGR01198 7 ELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQPL 52 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhCCC
Confidence 3444555566666666666533 348999999999998888876443
No 245
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=32.17 E-value=38 Score=35.99 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.6
Q ss_pred eEEEEeccCceEEEEEEeCC
Q 014219 7 VAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 7 ~~vgID~Gt~~~~va~~~~~ 26 (428)
++||+|+||+++.-|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999999544
No 246
>PLN02920 pantothenate kinase 1
Probab=31.80 E-value=4.6e+02 Score=25.22 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHH
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
.++..|.+|||++. .+.+.+++.+ +.++. -.|--.++..|+.++-..
T Consensus 95 ~~~~~i~~TGGGA~--k~~~~~~~~~-~i~~~-k~DEm~~li~Gl~fLl~~ 141 (398)
T PLN02920 95 HDKNFIKATGGGAY--KFADLFKEKL-GISLD-KEDEMDCLVTGANFLLKA 141 (398)
T ss_pred CCceEEEEECCcHH--HHHHHHHhhh-CCCce-eecHHHHHHHHHHHHHhh
Confidence 45688999999996 7788888887 55533 337778899999887643
No 247
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=31.43 E-value=1.5e+02 Score=24.86 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.3
Q ss_pred EEEEecCcceEEEEEEEeCCeEEE
Q 014219 205 LIFDLGGGTFDVSLLAIENGVIRV 228 (428)
Q Consensus 205 lvvDiG~~t~d~~~~~~~~~~~~~ 228 (428)
+=+|+||..||+.++.-..+.+..
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~ 25 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVAT 25 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEE
Confidence 458999999999999866444433
No 248
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=30.93 E-value=32 Score=34.02 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.1
Q ss_pred EEEeccCceEEEEEEeC
Q 014219 9 IGIDLGTTYSCVAVWQH 25 (428)
Q Consensus 9 vgID~Gt~~~~va~~~~ 25 (428)
||||+||++++++..+.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999998853
No 249
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=1.6e+02 Score=30.44 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=37.0
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhcCCC--Cc---CCCCChhhHHHhHHHHHHH
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFFLGK--NL---CRHINADEAVATGAAIQAA 387 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~--~v---~~~~~p~~ava~Ga~~~~~ 387 (428)
..++.|+|+||-....+|.+.+.+.+++. ++ ...+.-+..++.|=++.++
T Consensus 692 ~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 692 YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHHH
Confidence 34779999999999999999999998643 22 2334445678888777763
No 250
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.49 E-value=4.9e+02 Score=24.85 Aligned_cols=15 Identities=0% Similarity=0.388 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 014219 240 VDFNNRMVDYFVEEF 254 (428)
Q Consensus 240 ~~id~~l~~~l~~~~ 254 (428)
+.||+.|.+++.++.
T Consensus 13 D~iD~~iv~Ll~~R~ 27 (374)
T PRK11199 13 DEVDKQLLELLAKRL 27 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999887765
No 251
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=30.23 E-value=93 Score=28.17 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=41.7
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHH
Q 014219 305 TITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAI 384 (428)
Q Consensus 305 ~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~ 384 (428)
.+.+++....+.-++ |-..+.......+. -+.|.|+|+...-..++..++.. +.++... +.++++=.|...
T Consensus 227 ~l~~~d~~~fLsGll--IG~Eia~ar~~~~~----~~~i~lvg~~~L~~lY~~a~~~~--g~~v~~v-~~D~avr~gl~~ 297 (306)
T COG3734 227 ALAREDAAAFLSGLL--IGAEIAGARDSSGF----GTQITLVGDGALGALYAQALEAF--GLKVSAV-DADEAVRAGLLA 297 (306)
T ss_pred ccCHHHHHHHHhhhh--HhHHHHHHhhcccc----CCcEEEECCchHHHHHHHHHHhc--Ccceecc-cchHHHHHHHHH
Confidence 455666666555544 22334444444333 46899999988766666666554 5655443 666666555544
Q ss_pred HH
Q 014219 385 QA 386 (428)
Q Consensus 385 ~~ 386 (428)
.+
T Consensus 298 ~a 299 (306)
T COG3734 298 AA 299 (306)
T ss_pred HH
Confidence 43
No 252
>PLN03173 chalcone synthase; Provisional
Probab=30.08 E-value=2.2e+02 Score=27.40 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcCCC
Q 014219 309 ARFEQLNMDLF-EKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFLGK 366 (428)
Q Consensus 309 ~~~~~~~~~~i-~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~~~ 366 (428)
++-.+++.... +--.+..+++|++++.+..+|++|+++.-+. ..|.+--.|.+.+ +.
T Consensus 92 ~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~L-Gl 150 (391)
T PLN03173 92 DARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLL-GL 150 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHh-CC
Confidence 44444444433 3344678889999998889999988766444 5799999999999 44
No 253
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=29.78 E-value=1.1e+02 Score=29.35 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcC-cHHHHHHHHhhc
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSR-IPKLQQLLQDFF 363 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~-~~~l~~~l~~~~ 363 (428)
..+++-.+.+|...|-....... ..+|.|+||||-+. ++.+++.+.+.+
T Consensus 296 ~la~d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 296 KLALDAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 34556666777777766666542 24789999999886 588999998887
No 254
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=29.27 E-value=1.4e+02 Score=25.57 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhh
Q 014219 316 MDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDF 362 (428)
Q Consensus 316 ~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~ 362 (428)
+.+.+.+.+.+.+.+++.+ .-.|.|+||++-.+.++......
T Consensus 3 ~~~a~~i~~~i~~~i~~~~-----~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERG-----RAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCS-----SEEEEE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-----CEEEEEcCCHHHHHHHHHHhhhc
Confidence 3455566677777776633 34889999999998888888765
No 255
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=28.59 E-value=2.2e+02 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=34.6
Q ss_pred ceEEEEEEecCcceEEEEEEEeCCeEEEEEec-CCCCcchHHHHHHHHH
Q 014219 201 VKNVLIFDLGGGTFDVSLLAIENGVIRVRATD-GNTRLGGVDFNNRMVD 248 (428)
Q Consensus 201 ~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~-~~~~~Gg~~id~~l~~ 248 (428)
..+=+-||+|.+++-+.++.+..+.+...... .....||+.+|.+..-
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~ 211 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFA 211 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHH
Confidence 45567899999999999999887755443333 3345688888877643
No 256
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=28.49 E-value=42 Score=27.47 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.4
Q ss_pred EEEEeccCceEEEEEEe
Q 014219 8 AIGIDLGTTYSCVAVWQ 24 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~ 24 (428)
++|||-|+..+..++.+
T Consensus 1 ILGIDPGl~~tG~gvi~ 17 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIR 17 (156)
T ss_pred CEeECcccccccEEEEE
Confidence 58999999999999874
No 257
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=28.47 E-value=2e+02 Score=27.43 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcC-CcCcHHHHHHHHhhc
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGG-SSRIPKLQQLLQDFF 363 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG-~s~~~~l~~~l~~~~ 363 (428)
+++-.+.+|...|-..+...+ .+|.|++||| +=+++.+|+.+.+.+
T Consensus 298 A~~~f~~Ri~kyIg~y~a~L~----glDaiVFTaGIGENs~~iR~~v~~~L 344 (396)
T COG0282 298 ALDMFVYRIAKYIGSYAAALG----GLDALVFTAGIGENSALVRELVCEGL 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCEEEEeCccccCcHHHHHHHHhhh
Confidence 566677777777777777654 4789999999 556789999998887
No 258
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.29 E-value=55 Score=29.13 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=31.6
Q ss_pred CCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEeecccceeeeEEcCCcccEEEeC
Q 014219 370 RHINADEAVATGAAIQAAILSGVCSDKAEDLVILDLKPCSHEPKIATGSNPSLLIC 425 (428)
Q Consensus 370 ~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (428)
...|...|++.||++..+. .+.+++...-.|.-..-++.+|+.-+++-
T Consensus 208 v~mDskfaav~gal~dpaa--------~palvVd~GngHttaalvdedRI~gv~EH 255 (342)
T COG4012 208 VAMDSKFAAVMGALVDPAA--------DPALVVDYGNGHTTAALVDEDRIVGVYEH 255 (342)
T ss_pred EEEcchhHhhhhcccCccc--------CceEEEEccCCceEEEEecCCeEEEEeec
Confidence 3345555566665544322 14567777888999999999998877764
No 259
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=28.29 E-value=1e+02 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.3
Q ss_pred EEEEeccCceEEEEEEeCCe
Q 014219 8 AIGIDLGTTYSCVAVWQHDK 27 (428)
Q Consensus 8 ~vgID~Gt~~~~va~~~~~~ 27 (428)
+||||+|-....+++...+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999886554
No 260
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=27.79 E-value=33 Score=29.87 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=30.9
Q ss_pred CCeEEEEcCCcCc----------------HHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCC
Q 014219 340 VDDVVIVGGSSRI----------------PKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVC 393 (428)
Q Consensus 340 i~~Vvl~GG~s~~----------------~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~ 393 (428)
+|.|+|+||.+.+ .-.|+.++..+ -.......-|..++|+|.-+..-...|..
T Consensus 59 idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l-~~~a~~~~~PilGICrG~Q~lnv~~GGtl 127 (217)
T PF07722_consen 59 IDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELAL-IRNALGRGKPILGICRGMQLLNVAFGGTL 127 (217)
T ss_dssp SSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHH-HHHHCCTT--EEEETHHHHHHHHHCCSSE
T ss_pred cCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHH-HHHHHhcCCCEEEEcHHHHHHHHHhCCCc
Confidence 7899999999732 12344444433 22334556788899999999988877743
No 261
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=27.65 E-value=51 Score=27.74 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCcCc-----H---HHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 338 TAVDDVVIVGGSSRI-----P---KLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~-----~---~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.+++.|+|+||.+.. + .+.+.|+.... ..-|..++|.|.-+.+..+.+
T Consensus 45 ~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~------~~~pilgiC~G~q~l~~~lGG 100 (188)
T cd01741 45 DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA------AGKPVLGICLGHQLLARALGG 100 (188)
T ss_pred ccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH------CCCCEEEECccHHHHHHHhCC
Confidence 467999999997654 2 34445555441 225778899999888887755
No 262
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=27.50 E-value=4.9e+02 Score=23.98 Aligned_cols=259 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCceEEEEeccCceEEEEEEeCCeeEEEecCCCCcccceEEEEeCCceEecHhhhhhhhhCCCcchhhhhhhcCCCCC
Q 014219 2 AGKAGVAIGIDLGTTYSCVAVWQHDKVEIIPNDQGNRTTPSYVAFTDTESFVGDSAKNQVSTNPTNTVFDAKRLIGRRFS 81 (428)
Q Consensus 2 ~~~~~~~vgID~Gt~~~~va~~~~~~~~~i~~~~g~~~~pt~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~ 81 (428)
+......|| |+|.||.+.+..+....+.... .+-.+..|.
T Consensus 3 ~~~~p~Lvg-DIGGTnaRfaLv~~a~~~~~~~-----~~~~~~dyp---------------------------------- 42 (320)
T COG0837 3 AMGYPRLVG-DIGGTNARFALVEIAPAEPLQA-----ETYACADYP---------------------------------- 42 (320)
T ss_pred CCCCceEEE-ecCCcceEEEEeccCCCCcccc-----ceecccCcC----------------------------------
Q ss_pred ChhhhhhcccCCeeEEECCCCCceEEEEECCeEEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHH----
Q 014219 82 DVSVQSDIKHWPFKVIAGPDDKPMVEVKYKGKQKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQ---- 157 (428)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~---- 157 (428)
+.++.+.+||.+. ...+..-.-+.++=|..-+.-.
T Consensus 43 ------------------------------------sle~av~~yl~~~-----~~~~~~~a~~AiAgPv~gd~v~lTN~ 81 (320)
T COG0837 43 ------------------------------------SLEEAVQDYLSEH-----TAVAPRSACFAIAGPIDGDEVRLTNH 81 (320)
T ss_pred ------------------------------------CHHHHHHHHHHHh-----hccCccceEEEEecCccCCEEeeecC
Q ss_pred -----HHHHHHHHHHcCCceEeeechhHHHHHHh----hccccccCCccccCceEEEEEEecCcceEEEEEEEeCCeEEE
Q 014219 158 -----RQATEDAATQCGLQVLKIIAEPTAAAIAY----GLDRQQQGGIAASGVKNVLIFDLGGGTFDVSLLAIENGVIRV 228 (428)
Q Consensus 158 -----~~~l~~a~~~ag~~~v~~~~E~~Aaa~~~----~~~~~~~~~~~~~~~~~~lvvDiG~~t~d~~~~~~~~~~~~~ 228 (428)
++.|++.+ |++.+.++.+-+|.+++. -.+..+-......+....+|+--|-|-=-..++..+..-+.+
T Consensus 82 ~W~~s~~~~r~~L---gl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~~~w~~l 158 (320)
T COG0837 82 DWVFSIARMRAEL---GLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNGGGWIPL 158 (320)
T ss_pred cccccHHHHHHhc---CCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecCCeeEec
Q ss_pred EEecCCCCcch-HHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeEEEeecccCcceeEEee
Q 014219 229 RATDGNTRLGG-VDFNNRMVDYFVEEFKRKNKIDISGNARALHRLRIACESAKRTLSSTIQTSIEIDYLYEGINFSSTIT 307 (428)
Q Consensus 229 ~~~~~~~~~Gg-~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l~~~~~~~~~~~~~~~~~~~~~~i~ 307 (428)
-+..++..++- +..+-.+.+++.++ ......+.-.+-.-...++.+...++.. .........||
T Consensus 159 p~EGGHvdf~P~~~~E~~i~~~l~~~-~GrVS~Er~LSG~GL~~iY~al~~~~~~--------------~~~~~~p~~It 223 (320)
T COG0837 159 PGEGGHVDFAPRSEREFQILEYLRAR-FGRVSAERVLSGPGLVNLYRALCAADGR--------------LPEDLTPAAIT 223 (320)
T ss_pred cCCCccccCCCCCHHHHHHHHHHHHh-cCccchhhhcccccHHHHHHHHHHhhCC--------------CcccCCHHHHH
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHh
Q 014219 308 RARFE---QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQD 361 (428)
Q Consensus 308 ~~~~~---~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~ 361 (428)
...++ ..++..++-+...+-+.-...-...-.--.|+|+||-. |-|.+.+++
T Consensus 224 ~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lgarGGVyiaGGI~--pril~~l~~ 278 (320)
T COG0837 224 ERALAGGDALARETLSLFCAILGRVAGDLALTLGARGGVYIAGGIV--PRILEALKA 278 (320)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhccCcEEEcCCch--HhHHHHHhc
No 263
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=27.48 E-value=59 Score=27.51 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCeEEEEcCCc---CcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 340 VDDVVIVGGSS---RIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 340 i~~Vvl~GG~s---~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
.+.|+++||-+ ..+.+.+.|++ + ...-|...+|.|.-+.+..+.+
T Consensus 44 ~d~iIi~gGp~~~~~~~~~~~~i~~-~------~~~~PiLGIClG~Qlla~~~Gg 91 (190)
T PRK06895 44 FSHILISPGPDVPRAYPQLFAMLER-Y------HQHKSILGVCLGHQTLCEFFGG 91 (190)
T ss_pred CCEEEECCCCCChHHhhHHHHHHHH-h------cCCCCEEEEcHHHHHHHHHhCC
Confidence 57999999987 44555555543 3 1235788999999999988866
No 264
>PLN03172 chalcone synthase family protein; Provisional
Probab=26.67 E-value=2.5e+02 Score=27.07 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCc-CcHHHHHHHHhhcC
Q 014219 317 DLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSS-RIPKLQQLLQDFFL 364 (428)
Q Consensus 317 ~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s-~~~~l~~~l~~~~~ 364 (428)
...+--.+..+++|++.+.+..+|++|+++-.+. ..|.+--.|.+.++
T Consensus 101 ~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 3444445678889999998889999988765544 68999999999994
No 265
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=25.74 E-value=2.4e+02 Score=21.65 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=48.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEE--EEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHH
Q 014219 304 STITRARFEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVV--IVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVA 379 (428)
Q Consensus 304 ~~i~~~~~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vv--l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava 379 (428)
+.+..+.+.+-|-.+-..++..|.+-.-...... .|+ +.+. +.+.-+++.+.+.-.|..+....+-.+|.+
T Consensus 39 i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~ikl----AivGD~s~~-~~S~~l~dfi~EsN~G~~~~F~~~~~eA~~ 111 (113)
T PF13788_consen 39 IILPKEALSEDFFDLRTGLAGEILQKFVNYRIKL----AIVGDFSAY-ATSKSLRDFIYESNRGNHFFFVPDEEEAIA 111 (113)
T ss_pred EEEEhHHCCHHHHHhhcchHHHHHHHHHhhceeE----EEEEccccc-ccchhHHHHHHHhcCCCeEEEECCHHHHHh
Confidence 5566666666666666666666655555554432 455 5555 667889999999988888877777777665
No 266
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=25.71 E-value=98 Score=26.93 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhh
Q 014219 315 NMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDF 362 (428)
Q Consensus 315 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~ 362 (428)
...+.+.|.+.+.+.+++.+ .-.+.|+||.+-.+.++......
T Consensus 4 ~~~~a~~i~~~i~~~i~~~~-----~~~l~lsGGstp~~~y~~L~~~~ 46 (219)
T cd01400 4 AEALADRIAEALAAAIAKRG-----RFSLALSGGSTPKPLYELLAAAP 46 (219)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----eEEEEECCCccHHHHHHHhcccc
Confidence 34455666667777776532 24899999999998888887765
No 267
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=25.62 E-value=77 Score=27.88 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=11.4
Q ss_pred CCeEEEEcCCcCcHHH
Q 014219 340 VDDVVIVGGSSRIPKL 355 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l 355 (428)
+|.++|+||.---|.+
T Consensus 61 iDgliltGg~nV~P~~ 76 (243)
T COG2071 61 IDGLILTGGSNVDPSL 76 (243)
T ss_pred ccEEEecCCCcCCHHH
Confidence 6899999994444443
No 268
>PLN02914 hexokinase
Probab=25.57 E-value=2.4e+02 Score=28.11 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred CceEEEEEEecCcceEEEEEEEeC
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIEN 223 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~~ 223 (428)
+...++.+|+||.++-++.+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 467799999999999999999976
No 269
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=25.48 E-value=86 Score=30.61 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=26.1
Q ss_pred eEeeechhHHHHHHhhccccccCCccc-----cCceEEEEEEecCcceEEEEEEE
Q 014219 172 VLKIIAEPTAAAIAYGLDRQQQGGIAA-----SGVKNVLIFDLGGGTFDVSLLAI 221 (428)
Q Consensus 172 ~v~~~~E~~Aaa~~~~~~~~~~~~~~~-----~~~~~~lvvDiG~~t~d~~~~~~ 221 (428)
.+.+++-.+=+.++++.-..-...+.. ....++-++|+||++|.+++..-
T Consensus 129 ~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 129 WVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp TCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEET
T ss_pred ceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeeccC
Confidence 467777655555554321111001111 13577899999999999996654
No 270
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=25.46 E-value=2.7e+02 Score=20.70 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhcCCCCc
Q 014219 322 CIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFFLGKNL 368 (428)
Q Consensus 322 i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v 368 (428)
+.+.+.+.+++... ..|+...|.....++++.+++.. |.++
T Consensus 58 i~e~i~~~~~~~~~-----P~ii~IP~~~~~~~i~~~v~raI-G~di 98 (100)
T PRK02228 58 LPRRLRRTLEESVE-----PTVVTLGGGGGSGGLREKIKRAI-GVDL 98 (100)
T ss_pred hHHHHHHHHhcCCC-----CEEEEECCCccchHHHHHHHHHh-Cccc
Confidence 34445554544332 26777777666689999999988 5443
No 271
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=25.36 E-value=1.4e+02 Score=28.21 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHH------HHHHhhcCCCCcCCCCC
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQ------QLLQDFFLGKNLCRHIN 373 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~------~~l~~~~~~~~v~~~~~ 373 (428)
.+.+.+.+.|...+++++++++....+++.|.++-|-+..++|+ +.|...+ +++++....
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~-~~PligV~H 109 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLW-GKPLVGVNH 109 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHc-CCCEeecch
Confidence 45677889999999999999998888999999999988878776 4444444 666655533
No 272
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.94 E-value=1.3e+02 Score=28.03 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHH------HHHHhhcCCCCcCCCCChhhHHHh
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQ------QLLQDFFLGKNLCRHINADEAVAT 380 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~------~~l~~~~~~~~v~~~~~p~~ava~ 380 (428)
.+.+.+.+.+...++++|++++.+..+++.|.++-|-+..++++ +.+...+ ++++... +..++=|.
T Consensus 40 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~-~~p~~~v-~h~~aHa~ 111 (322)
T TIGR03722 40 EAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKL-NKPLVGV-NHCVAHIE 111 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHh-CCCeech-hhHHHHHH
Confidence 34566778888999999999998888999999999877777776 3344444 5554433 44444333
No 273
>PRK14878 UGMP family protein; Provisional
Probab=24.67 E-value=1.1e+02 Score=28.44 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHH------HHHHhhcCCCCcCCCCChhhHHHh
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQ------QLLQDFFLGKNLCRHINADEAVAT 380 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~------~~l~~~~~~~~v~~~~~p~~ava~ 380 (428)
...+...+.+...+++++++++....+++.|.++-|-+..++|+ +.+...+ ++++... +..++=+.
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~-~~p~~~v-~h~~~Ha~ 110 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKY-NKPLVPV-NHCIAHIE 110 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHh-CCCcccc-chHHHHHH
Confidence 34566778888999999999998888999999998877777776 3444444 5555444 44544443
No 274
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=24.62 E-value=97 Score=28.81 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=31.4
Q ss_pred EEEEecCcceEEEEEEEeCCe---EEEEEecCCCCcchHHHHHHHHHHHHH
Q 014219 205 LIFDLGGGTFDVSLLAIENGV---IRVRATDGNTRLGGVDFNNRMVDYFVE 252 (428)
Q Consensus 205 lvvDiG~~t~d~~~~~~~~~~---~~~~~~~~~~~~Gg~~id~~l~~~l~~ 252 (428)
++.||||..+-++++...... .....+.. ..+ ..+++.+.+++.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~-~~~--~s~~~~l~~~l~~ 48 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPS-ADF--PSFEDALADYLAE 48 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEG-CCC--CHHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEec-CCc--CCHHHHHHHHHHh
Confidence 688999999999999987765 22222332 333 3488888888874
No 275
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=24.53 E-value=61 Score=27.41 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCeEEEEcCCcCcHH--------------------HHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcC
Q 014219 340 VDDVVIVGGSSRIPK--------------------LQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSG 391 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~--------------------l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~ 391 (428)
++.|+|+||.+..+. ..+.++..+ ...-|..++|.|.-+.+..+-+
T Consensus 54 ~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~PilgiC~G~Q~l~~~~Gg 119 (189)
T cd01745 54 LDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAAL------ERGKPILGICRGMQLLNVALGG 119 (189)
T ss_pred CCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHH------HCCCCEEEEcchHHHHHHHhCC
Confidence 679999999876442 234444443 1234778899999888888766
No 276
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=24.28 E-value=5.3e+02 Score=23.22 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHHHhhc
Q 014219 319 FEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLLQDFF 363 (428)
Q Consensus 319 i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l~~~~ 363 (428)
++.+...+...++.. ....++++||-+...+||+.+++..
T Consensus 206 ~~~l~~~~~~a~~~~-----~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 206 ADHLAKKAPRALEKP-----RAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHHHHHHHHHHHHH-----TCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----cccccchHHHHHHHHHHHHHHHHHH
Confidence 444455555555553 3569999999999999999998764
No 277
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=24.03 E-value=1.8e+02 Score=26.21 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=28.2
Q ss_pred CceEEEEEEecCcceEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 014219 200 GVKNVLIFDLGGGTFDVSLLAIENGVIRVRATDGNTRLGGVDFN 243 (428)
Q Consensus 200 ~~~~~lvvDiG~~t~d~~~~~~~~~~~~~~~~~~~~~~Gg~~id 243 (428)
+...++.+|+|.+++.+.+.+.....+.........-..|.-+|
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~d 65 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVD 65 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEee
Confidence 47789999999999998887655444444444333333444444
No 278
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=24.03 E-value=1.3e+02 Score=27.80 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHH------HHHhhcCCCCcCCCCChhhHHHh
Q 014219 313 QLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQ------LLQDFFLGKNLCRHINADEAVAT 380 (428)
Q Consensus 313 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~------~l~~~~~~~~v~~~~~p~~ava~ 380 (428)
...+...+.|...++++|++++.+..+++.|.++-|-+..++++- .+...+ ++++... +..++-|.
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~-~~p~~~v-~hl~~ha~ 114 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSL-DKPLIGV-NHLLGHIY 114 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHh-CCCEeec-ccHHHHHH
Confidence 345668888999999999999998889999999999888888873 333444 5555444 44444443
No 279
>PLN02192 3-ketoacyl-CoA synthase
Probab=23.81 E-value=2.6e+02 Score=28.05 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcC-CcCcHHHHHHHHhhcC
Q 014219 311 FEQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGG-SSRIPKLQQLLQDFFL 364 (428)
Q Consensus 311 ~~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG-~s~~~~l~~~l~~~~~ 364 (428)
+++..++...-+...+++++++.+.++.+|+.|+.... ....|.+-..|.++++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 45555555566678889999999999999998876533 3457999999999994
No 280
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=23.76 E-value=2.2e+02 Score=26.63 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHH------HHHHhhcCCCCcCCC
Q 014219 312 EQLNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQ------QLLQDFFLGKNLCRH 371 (428)
Q Consensus 312 ~~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~------~~l~~~~~~~~v~~~ 371 (428)
|.+.+.+++.|...+++++++++.+..++|.|-.|=|-+..+.|. +.|.-.+ +++++..
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~-~kPli~V 108 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALAL-NKPLIPV 108 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHh-CCCEeec
Confidence 356788999999999999999999888999999999988888775 4444444 5555444
No 281
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=23.55 E-value=75 Score=33.17 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred CceEEEEeccCceEEEEEEeCC
Q 014219 5 AGVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 5 ~~~~vgID~Gt~~~~va~~~~~ 26 (428)
..+++|+|+|++++.-|+.+++
T Consensus 3 ~~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 3 KAYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred cceEEEeeccccceeeEEeecc
Confidence 5799999999999999888655
No 282
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=23.46 E-value=2.8e+02 Score=24.13 Aligned_cols=54 Identities=15% Similarity=0.307 Sum_probs=38.6
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHHHcCCccCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEe
Q 014219 114 QKQVAAEEISSMVLKKKREIAEAFVGTAVTNAVITVPAYFSDSQRQATEDAATQCGLQVLK 174 (428)
Q Consensus 114 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~vitvP~~~~~~~~~~l~~a~~~ag~~~v~ 174 (428)
-+.+..++++.. .+..+..+ +...+.+|||....-.++-.|...++.+|.+-++
T Consensus 97 Gr~f~a~eVL~L-----t~~tR~LL--P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ 150 (242)
T PF04481_consen 97 GRRFSAEEVLAL-----TRETRSLL--PDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQ 150 (242)
T ss_pred CCeecHHHHHHH-----HHHHHHhC--CCCceEEecCccccHHHHHHHHHHHHHhCCcEEE
Confidence 344677766654 33333333 3458899999999999999999999999986544
No 283
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=23.16 E-value=2.1e+02 Score=18.83 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCce
Q 014219 146 VITVPAYFSDSQRQATEDAATQCGLQV 172 (428)
Q Consensus 146 vitvP~~~~~~~~~~l~~a~~~ag~~~ 172 (428)
.++.|+ .+..+|..+.+.++..|+..
T Consensus 22 ~~~f~p-m~~~~R~~iH~~a~~~gL~s 47 (63)
T PF01424_consen 22 SLEFPP-MNSFERKLIHELAEYYGLKS 47 (63)
T ss_dssp EEEEEC---SHHHHHHHHHHHHCTEEE
T ss_pred EEEECC-CCHHHHHHHHHHHHHCCCEE
Confidence 677787 89999999999999888755
No 284
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=22.74 E-value=5.9e+02 Score=23.20 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=36.9
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEeec
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILDL 405 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~~ 405 (428)
+..|.+|||++. .+.+.+...| +.++. ..|--.|...|+-.+-....+ ..+.|..+..+
T Consensus 50 ~~~i~~TGgGa~--k~~~~~~~~~-~v~~~-k~dE~~a~~~g~~~ll~~~~~---~~~~p~llvnI 108 (279)
T TIGR00555 50 ITTLCATGGGAF--KFAELIYESA-GIQLH-KFDEFDALIQGLNYLLKEEPK---DDIYPYLLVNI 108 (279)
T ss_pred ceEEEEECCcHH--HHHHHhcccc-CCccc-chhHHHHHHHHHHHHhhcccC---CCCCceEEEEe
Confidence 568999999996 6777777777 44432 235556777777776533322 23455555554
No 285
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=22.55 E-value=3.7e+02 Score=25.33 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=35.9
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHh
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAAIL 389 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 389 (428)
.....|..|||++- -+.+.+++.+ +.++... |--++...|+-.+-...
T Consensus 82 ~~~~~I~aTGGGA~--Ky~~~~~~~L-gv~v~K~-DEm~clI~Gl~fLl~~i 129 (341)
T PF03630_consen 82 QKITKICATGGGAF--KYADLFKEKL-GVEVQKE-DEMECLIKGLNFLLKNI 129 (341)
T ss_dssp GCSSEEEEESTTHH--HHHCHHHCTS-TSEEEE---HHHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCCcHH--HHHHHHHHhc-CCCeeEe-hHHHHHHhhHHHHHhcC
Confidence 34579999999994 5788888888 6766665 66668999999888743
No 286
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=22.28 E-value=10 Score=31.17 Aligned_cols=21 Identities=19% Similarity=0.242 Sum_probs=17.0
Q ss_pred ceEEEEeccCceEEEEEEeCC
Q 014219 6 GVAIGIDLGTTYSCVAVWQHD 26 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~ 26 (428)
.-++|+|+||+|+.++..++.
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred cceeccCCCcchHHHHHHhcc
Confidence 348999999999988877643
No 287
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=21.98 E-value=1.5e+02 Score=27.53 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHH------HHHhhcCCCCcCCCCChhhHHHh
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQ------LLQDFFLGKNLCRHINADEAVAT 380 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~------~l~~~~~~~~v~~~~~p~~ava~ 380 (428)
..+...+.+...+++.+++++....+++.|.++-|-+..++||- .+...+ ++++... +..++.|.
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~~p~~~v-~h~~aha~ 115 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-NKPLIGV-NHLEGHLL 115 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-CCCEEec-ccHHHHHH
Confidence 45667888889999999999888889999999999999999874 344444 5565444 44445544
No 288
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=21.53 E-value=1.5e+02 Score=26.79 Aligned_cols=69 Identities=19% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCcHHHHHHH------HhhcCCCCcCCCCChhhHHHhHHHH
Q 014219 314 LNMDLFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRIPKLQQLL------QDFFLGKNLCRHINADEAVATGAAI 384 (428)
Q Consensus 314 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~~~l~~~l------~~~~~~~~v~~~~~p~~ava~Ga~~ 384 (428)
+.+.+.+.+...+++.+++.+.+..+++.|.++-|-+...+|+--+ ...+ +++++.. +..++.+..+.+
T Consensus 25 a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~-~~Pli~v-~~l~a~a~~~~~ 99 (268)
T PF00814_consen 25 ASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL-NIPLIGV-SHLEAHALSARL 99 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT-T--EEEE-EHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh-CCCeEee-ccHHHHHHhHhh
Confidence 4466788899999999999999988999999999988888887433 3334 4555443 555555554443
No 289
>PRK03011 butyrate kinase; Provisional
Probab=21.36 E-value=1.1e+02 Score=29.05 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.7
Q ss_pred ceEEEEeccCceEEEEEEeCCee
Q 014219 6 GVAIGIDLGTTYSCVAVWQHDKV 28 (428)
Q Consensus 6 ~~~vgID~Gt~~~~va~~~~~~~ 28 (428)
+.++.|.-|+|+||++++++...
T Consensus 2 ~~il~inpgststk~a~~~~~~~ 24 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKP 24 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCce
Confidence 46999999999999999976644
No 290
>PTZ00297 pantothenate kinase; Provisional
Probab=21.32 E-value=6.7e+02 Score=29.11 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCCChhhHHHhHHHHHHH
Q 014219 338 TAVDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHINADEAVATGAAIQAA 387 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~ 387 (428)
.+...|.+|||++. .+.+.+++.+ +..+.. .|--.+...|+-+.-.
T Consensus 1137 ~~~~~i~~TGGGA~--k~~~~~~~~~-~~~~~~-~dEm~~li~G~~~l~~ 1182 (1452)
T PTZ00297 1137 QYRTKVRATGGGAF--KYASVAKKVL-GINFSV-MREMDAVVKGLNLVIR 1182 (1452)
T ss_pred CCceEEEEeCCcHH--HHHHHHHHHh-CCCcce-ecHHHHHHHHHHHHHh
Confidence 45678999999996 6677888888 554433 3666788889887753
No 291
>PLN03168 chalcone synthase; Provisional
Probab=21.30 E-value=3.2e+02 Score=26.24 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCeEEEEcC-CcCcHHHHHHHHhhcCCC
Q 014219 309 ARFEQLNMD-LFEKCIEHVDTCLAKAKIDRTAVDDVVIVGG-SSRIPKLQQLLQDFFLGK 366 (428)
Q Consensus 309 ~~~~~~~~~-~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG-~s~~~~l~~~l~~~~~~~ 366 (428)
++-.+++.. ..+--.+..+++|++.+.+..+|++|+++-. .-.+|.+--.|.+.+ |.
T Consensus 91 ~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~L-Gl 149 (389)
T PLN03168 91 NVRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLL-GL 149 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHh-Cc
Confidence 444444444 3444457789999999998899999977533 234799999999999 44
No 292
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=21.23 E-value=64 Score=28.22 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=36.5
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcCCCCcCCCC----ChhhHHHhHHHHHHHHhc
Q 014219 340 VDDVVIVGGSSRIPKLQQLLQDFFLGKNLCRHI----NADEAVATGAAIQAAILS 390 (428)
Q Consensus 340 i~~Vvl~GG~s~~~~l~~~l~~~~~~~~v~~~~----~p~~ava~Ga~~~~~~~~ 390 (428)
++.|+++||.++-....+.+++.| ++.+.+.+ -|..+++.|--++....+
T Consensus 112 vNGviftGGwak~~dY~~vvkkif-nk~le~nDaGehFPvyg~CLGFE~lsmiIS 165 (340)
T KOG1559|consen 112 VNGVIFTGGWAKRGDYFEVVKKIF-NKVLERNDAGEHFPVYGICLGFELLSMIIS 165 (340)
T ss_pred hceeEecCcccccccHHHHHHHHH-HHHHhccCCccccchhhhhhhHHHHHHHHh
Confidence 579999999998877788888888 44333222 356678888877777776
No 293
>PRK09698 D-allose kinase; Provisional
Probab=21.10 E-value=4.6e+02 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcceEEEEEEEeCCeEE
Q 014219 201 VKNVLIFDLGGGTFDVSLLAIENGVIR 227 (428)
Q Consensus 201 ~~~~lvvDiG~~t~d~~~~~~~~~~~~ 227 (428)
...++.+|+|+..+.++++......+.
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i~~ 29 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEILH 29 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCEEE
Confidence 456899999999999999987655443
No 294
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=20.62 E-value=2.2e+02 Score=22.58 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=18.4
Q ss_pred CeEEEEcCCc--CcHHHHHHHHhhc
Q 014219 341 DDVVIVGGSS--RIPKLQQLLQDFF 363 (428)
Q Consensus 341 ~~Vvl~GG~s--~~~~l~~~l~~~~ 363 (428)
|.|+.+||.| .-.+..+.+++.+
T Consensus 58 D~VittGG~g~~~~D~t~~a~~~~~ 82 (144)
T PF00994_consen 58 DLVITTGGTGPGPDDVTPEALAEAG 82 (144)
T ss_dssp SEEEEESSSSSSTTCHHHHHHHHHS
T ss_pred CEEEEcCCcCcccCCcccHHHHHhc
Confidence 6999999876 5567888888777
No 295
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.41 E-value=2.7e+02 Score=26.57 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCCCeEEEEcCCcCc------HHHHHHHHhhcCC---CCcCCCCChhhHHHhHHHHHHHHhcCCCCCcCcceEEeecccc
Q 014219 338 TAVDDVVIVGGSSRI------PKLQQLLQDFFLG---KNLCRHINADEAVATGAAIQAAILSGVCSDKAEDLVILDLKPC 408 (428)
Q Consensus 338 ~~i~~Vvl~GG~s~~------~~l~~~l~~~~~~---~~v~~~~~p~~ava~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (428)
..++.|++-||+..+ .-|-+.|++.|+- ..+..-.+|...-. .-+......| +-+.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~--e~L~~l~~~G-------------vnri 118 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEA--GRFRGYRAAG-------------VNRV 118 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCH--HHHHHHHHcC-------------CCEE
Confidence 357899998887442 2445566666632 23444556654211 2222222233 5678
Q ss_pred eeeeEEcCCcccEEEeCCC
Q 014219 409 SHEPKIATGSNPSLLICNH 427 (428)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~ 427 (428)
|+|+.+.+.+....+.|++
T Consensus 119 slGvQS~~d~vL~~l~R~~ 137 (380)
T PRK09057 119 SLGVQALNDADLRFLGRLH 137 (380)
T ss_pred EEecccCCHHHHHHcCCCC
Confidence 9999998877766666654
No 296
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.34 E-value=1.7e+02 Score=26.51 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCeEEEEcCCcCc---HHHH---HHHHhhcCCCCcCCCCChhhHHHhHHHHHHHHhcCC
Q 014219 340 VDDVVIVGGSSRI---PKLQ---QLLQDFFLGKNLCRHINADEAVATGAAIQAAILSGV 392 (428)
Q Consensus 340 i~~Vvl~GG~s~~---~~l~---~~l~~~~~~~~v~~~~~p~~ava~Ga~~~~~~~~~~ 392 (428)
++.|++.||.... ++++ ..++... ...-....-|..++|.|+-+++....+.
T Consensus 55 ~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~-~~~~~g~~~Pv~GiClG~QlL~~~~gg~ 112 (273)
T cd01747 55 INGILFPGGAVDIDTSGYARTAKIIYNLAL-ERNDAGDYFPVWGTCLGFELLTYLTSGE 112 (273)
T ss_pred CCEEEECCCCCcCCccccchHHHHHHHHHH-HhhhcCCCCcEEEEcHHHHHHHHHhCCC
Confidence 6799999997543 2333 2223332 1110111247789999999999888773
No 297
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=20.22 E-value=1.7e+02 Score=21.92 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhccCC------ceeEEEeecccCcceeEEeeHHHHH
Q 014219 271 RLRIACESAKRTLSSTI------QTSIEIDYLYEGINFSSTITRARFE 312 (428)
Q Consensus 271 ~l~~~~e~~K~~l~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~ 312 (428)
++....++++..|.... ..-+.+....++.-..+.|+.+-++
T Consensus 16 ~mQ~k~~~~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~~~l~ 63 (102)
T TIGR00103 16 QMQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLE 63 (102)
T ss_pred HHHHHHHHHHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECHHHHh
Confidence 34456666666664322 1224444334455567788777665
No 298
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.10 E-value=1.6e+02 Score=28.09 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCcCc------HHHHHHHHhhcC---CCCcCCCCChhhHHHhHHHHHHHH
Q 014219 318 LFEKCIEHVDTCLAKAKIDRTAVDDVVIVGGSSRI------PKLQQLLQDFFL---GKNLCRHINADEAVATGAAIQAAI 388 (428)
Q Consensus 318 ~i~~i~~~i~~~l~~~~~~~~~i~~Vvl~GG~s~~------~~l~~~l~~~~~---~~~v~~~~~p~~ava~Ga~~~~~~ 388 (428)
.++.+.+.|+...+..+.....++.|++.||.-.. .-|-+.+++.++ +..+..-.+|...-. ..+....
T Consensus 38 Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~--e~l~~l~ 115 (375)
T PRK05628 38 YLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSP--EFFAALR 115 (375)
T ss_pred HHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCH--HHHHHHH
Confidence 34444444444444332122347788888887442 444455555552 122333335543111 1111111
Q ss_pred hcCCCCCcCcceEEeecccceeeeEEcCCcccEEEeCC
Q 014219 389 LSGVCSDKAEDLVILDLKPCSHEPKIATGSNPSLLICN 426 (428)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (428)
..| +...|+|+...+.+....+.|+
T Consensus 116 ~~G-------------~~rvslGvQS~~~~~L~~l~R~ 140 (375)
T PRK05628 116 AAG-------------FTRVSLGMQSAAPHVLAVLDRT 140 (375)
T ss_pred HcC-------------CCEEEEecccCCHHHHHHcCCC
Confidence 123 5577888888776665555554
No 299
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=20.08 E-value=2.2e+02 Score=22.72 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=17.7
Q ss_pred CCceEEEEeccCceEEEEEEeCCee
Q 014219 4 KAGVAIGIDLGTTYSCVAVWQHDKV 28 (428)
Q Consensus 4 ~~~~~vgID~Gt~~~~va~~~~~~~ 28 (428)
+...+||||-|++.=.++.-=+|.+
T Consensus 30 ~~~lIVGiDPG~ttgiAildL~G~~ 54 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGIAILDLDGEL 54 (138)
T ss_pred CCCEEEEECCCceeEEEEEecCCcE
Confidence 3568999999998655554456654
Done!