Query 014220
Match_columns 428
No_of_seqs 244 out of 1566
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0228 Beta-fructofuranosidas 100.0 2.3E-90 5E-95 691.2 27.8 402 5-409 8-411 (571)
2 COG1621 SacC Beta-fructosidase 100.0 5.1E-85 1.1E-89 669.4 33.4 326 36-391 19-358 (486)
3 TIGR01322 scrB_fam sucrose-6-p 100.0 2.1E-77 4.6E-82 621.4 37.0 308 39-381 7-335 (445)
4 smart00640 Glyco_32 Glycosyl h 100.0 1E-75 2.2E-80 607.3 38.0 309 50-379 1-321 (437)
5 PF00251 Glyco_hydro_32N: Glyc 100.0 6.2E-77 1.3E-81 590.5 25.6 300 50-369 1-308 (308)
6 cd08996 GH32_B_Fructosidase Gl 100.0 5.2E-68 1.1E-72 523.3 33.4 286 56-372 1-298 (298)
7 cd08995 GH32_Aec43_like Glycos 100.0 4.1E-56 8.8E-61 435.1 29.5 267 59-363 1-279 (280)
8 cd08979 GH_J Glycosyl hydrolas 100.0 6.8E-39 1.5E-43 310.7 27.1 242 60-335 8-264 (276)
9 cd08772 GH43_62_32_68 Glycosyl 100.0 3.3E-36 7.1E-41 292.2 27.5 270 59-357 1-286 (286)
10 cd08997 GH68 Glycosyl hydrolas 99.9 9.5E-26 2.1E-30 225.1 25.1 194 60-273 9-256 (349)
11 cd08994 GH43_like_2 Glycosyl h 99.9 4.7E-23 1E-27 202.6 19.5 191 49-248 4-282 (291)
12 cd09004 GH43_bXyl Glycosyl hyd 99.8 1.5E-19 3.2E-24 176.5 20.1 192 55-283 5-197 (275)
13 cd08993 GH43_DUF377 Glycosyl h 99.8 1.4E-19 3E-24 176.2 18.3 160 60-242 2-168 (268)
14 cd08984 GH43_5 Glycosyl hydrol 99.8 7.7E-19 1.7E-23 173.3 20.9 162 58-248 79-246 (294)
15 cd08999 GH43_ABN_2 Glycosyl hy 99.8 5.8E-18 1.3E-22 165.7 21.2 196 56-284 6-212 (287)
16 cd08990 GH43_AXH_like Glycosyl 99.7 7.8E-17 1.7E-21 157.3 19.8 195 60-283 2-206 (274)
17 cd08978 GH_F Glycosyl hydrolas 99.7 1.5E-15 3.2E-20 146.6 20.1 192 60-284 2-202 (271)
18 cd08991 GH43_bXyl_2 Glycosyl h 99.7 5.3E-15 1.2E-19 145.6 21.1 180 60-274 2-204 (294)
19 cd08992 GH43_like_1 Glycosyl h 99.7 5.6E-15 1.2E-19 147.8 18.6 179 46-232 24-248 (349)
20 cd08998 GH43_ABN_1 Glycosyl hy 99.6 5.2E-14 1.1E-18 138.4 19.8 179 58-273 1-192 (288)
21 cd08984 GH43_5 Glycosyl hydrol 99.6 5.7E-14 1.2E-18 138.7 19.4 169 58-248 11-193 (294)
22 cd08985 GH43_6 Glycosyl hydrol 99.6 1.1E-12 2.3E-17 127.8 23.7 198 59-294 4-211 (265)
23 cd09000 GH43_XYL_1 Glycosyl hy 99.4 6.2E-12 1.3E-16 123.7 19.2 178 56-273 6-196 (288)
24 cd09003 GH43_AXH_1 Glycosyl hy 99.4 1.6E-11 3.5E-16 122.3 20.0 187 56-273 7-215 (311)
25 cd08983 GH43_4 Glycosyl hydrol 99.4 4.8E-11 1E-15 116.9 22.8 185 55-273 15-207 (276)
26 PF04041 DUF377: Domain of unk 99.4 3.6E-12 7.9E-17 126.8 15.0 196 63-284 36-236 (312)
27 PF04616 Glyco_hydro_43: Glyco 99.4 2.4E-11 5.3E-16 118.5 18.3 183 56-274 8-200 (286)
28 cd08981 GH43_2 Glycosyl hydrol 99.3 1.5E-10 3.3E-15 114.3 20.8 135 56-204 4-142 (291)
29 cd08988 GH43_ABN Glycosyl hydr 99.3 1.8E-10 3.8E-15 113.0 20.6 180 59-273 1-193 (279)
30 cd08979 GH_J Glycosyl hydrolas 99.3 7.7E-11 1.7E-15 114.1 15.6 137 56-205 64-209 (276)
31 cd08992 GH43_like_1 Glycosyl h 99.3 3.4E-10 7.4E-15 113.6 19.2 171 58-248 112-310 (349)
32 cd08986 GH43_7 Glycosyl hydrol 99.2 7.6E-10 1.7E-14 108.0 18.1 179 57-273 1-202 (269)
33 cd08989 GH43_XYL Glycosyl hydr 99.2 1.5E-09 3.3E-14 105.9 19.6 174 56-274 6-190 (269)
34 cd09001 GH43_XYL_2 Glycosyl hy 99.1 5.3E-09 1.1E-13 102.1 20.0 169 56-273 9-191 (269)
35 cd08993 GH43_DUF377 Glycosyl h 99.1 1.2E-09 2.5E-14 106.5 14.8 99 121-228 3-103 (268)
36 cd08980 GH43_1 Glycosyl hydrol 99.1 4.8E-09 1E-13 103.2 18.9 190 60-284 2-205 (288)
37 cd09002 GH43_XYL_3 Glycosyl hy 99.1 5.5E-09 1.2E-13 102.6 17.8 121 57-204 14-134 (280)
38 cd08987 GH62 Glycosyl hydrolas 99.0 3.9E-08 8.5E-13 95.5 17.7 202 51-295 14-230 (303)
39 cd08982 GH43_3 Glycosyl hydrol 98.9 7.1E-08 1.5E-12 95.5 18.4 171 58-284 3-191 (295)
40 PF02435 Glyco_hydro_68: Levan 98.9 4.1E-08 8.8E-13 100.0 16.0 200 54-272 52-318 (428)
41 COG2152 Predicted glycosylase 98.9 4.2E-08 9E-13 95.1 15.1 149 60-231 33-193 (314)
42 cd08994 GH43_like_2 Glycosyl h 98.7 1.1E-07 2.5E-12 93.4 12.0 108 59-171 81-198 (291)
43 cd08995 GH32_Aec43_like Glycos 98.7 7.8E-07 1.7E-11 87.0 16.1 133 58-206 62-201 (280)
44 PF04041 DUF377: Domain of unk 98.6 2.1E-07 4.6E-12 92.8 11.3 103 115-228 29-134 (312)
45 cd08999 GH43_ABN_2 Glycosyl hy 98.6 2.1E-06 4.5E-11 84.1 18.1 157 56-228 60-227 (287)
46 cd08990 GH43_AXH_like Glycosyl 98.6 4.8E-06 1E-10 81.2 20.2 154 55-229 61-219 (274)
47 cd08983 GH43_4 Glycosyl hydrol 98.6 8E-07 1.7E-11 87.2 14.1 89 167-273 5-99 (276)
48 cd08991 GH43_bXyl_2 Glycosyl h 98.6 9.4E-06 2E-10 79.8 21.4 163 55-231 52-233 (294)
49 cd08978 GH_F Glycosyl hydrolas 98.6 3.1E-06 6.6E-11 81.5 17.4 156 55-226 56-215 (271)
50 cd08772 GH43_62_32_68 Glycosyl 98.5 7.8E-06 1.7E-10 79.0 17.0 157 55-226 57-224 (286)
51 cd08986 GH43_7 Glycosyl hydrol 98.5 1.9E-06 4.2E-11 84.1 12.6 121 184-329 2-147 (269)
52 cd08981 GH43_2 Glycosyl hydrol 98.4 5.6E-06 1.2E-10 81.8 13.9 77 182-273 4-87 (291)
53 cd08989 GH43_XYL Glycosyl hydr 98.3 1.4E-05 3.1E-10 77.9 13.7 72 183-273 7-87 (269)
54 cd08996 GH32_B_Fructosidase Gl 98.2 2.1E-05 4.5E-10 77.6 14.1 114 125-248 10-134 (298)
55 cd09002 GH43_XYL_3 Glycosyl hy 98.2 2.4E-05 5.1E-10 76.9 14.3 78 167-273 7-84 (280)
56 cd08998 GH43_ABN_1 Glycosyl hy 98.2 4.2E-05 9.1E-10 75.2 15.9 154 55-224 55-217 (288)
57 cd08997 GH68 Glycosyl hydrolas 98.1 0.00012 2.7E-09 73.8 15.8 147 67-224 80-283 (349)
58 cd09004 GH43_bXyl Glycosyl hyd 98.1 0.00041 8.8E-09 67.7 18.9 142 57-228 65-213 (275)
59 COG3507 XynB Beta-xylosidase [ 98.0 9.5E-05 2.1E-09 77.4 14.8 142 89-248 55-215 (549)
60 COG2152 Predicted glycosylase 98.0 5.6E-05 1.2E-09 73.7 11.8 102 117-229 30-138 (314)
61 PF04616 Glyco_hydro_43: Glyco 97.9 0.00013 2.7E-09 71.2 12.4 150 60-226 69-222 (286)
62 cd08985 GH43_6 Glycosyl hydrol 97.8 0.0017 3.6E-08 63.4 18.7 148 55-228 62-214 (265)
63 TIGR01322 scrB_fam sucrose-6-p 97.7 0.00032 6.9E-09 73.5 12.5 135 60-205 88-225 (445)
64 PF03664 Glyco_hydro_62: Glyco 97.7 0.0041 8.9E-08 58.9 18.0 188 51-277 16-211 (271)
65 cd08988 GH43_ABN Glycosyl hydr 97.7 0.0021 4.5E-08 63.1 16.9 152 56-225 55-219 (279)
66 cd09003 GH43_AXH_1 Glycosyl hy 97.7 0.0053 1.1E-07 61.3 19.4 147 58-228 78-246 (311)
67 cd09001 GH43_XYL_2 Glycosyl hy 97.6 0.0028 6.2E-08 61.8 16.5 135 57-225 75-212 (269)
68 cd08980 GH43_1 Glycosyl hydrol 97.6 0.004 8.7E-08 61.1 17.3 145 56-218 53-209 (288)
69 smart00640 Glyco_32 Glycosyl h 97.5 0.00064 1.4E-08 71.1 10.8 131 64-205 74-215 (437)
70 cd09000 GH43_XYL_1 Glycosyl hy 97.4 0.01 2.3E-07 58.2 17.2 147 54-226 64-219 (288)
71 cd00260 Sialidase Sialidases o 97.1 0.026 5.6E-07 56.8 16.9 166 42-226 57-238 (351)
72 PF13088 BNR_2: BNR repeat-lik 97.0 0.0044 9.5E-08 59.9 10.4 149 57-226 47-199 (275)
73 PF00251 Glyco_hydro_32N: Glyc 96.9 0.023 4.9E-07 56.6 14.4 115 123-248 14-138 (308)
74 cd08982 GH43_3 Glycosyl hydrol 96.8 0.021 4.5E-07 56.6 13.1 138 54-205 87-240 (295)
75 cd08987 GH62 Glycosyl hydrolas 96.5 0.13 2.9E-06 50.5 15.7 144 58-226 78-230 (303)
76 PF13088 BNR_2: BNR repeat-lik 96.0 0.16 3.4E-06 49.0 13.7 144 69-227 1-151 (275)
77 COG3507 XynB Beta-xylosidase [ 94.4 0.87 1.9E-05 48.4 13.9 151 53-222 86-244 (549)
78 cd00260 Sialidase Sialidases o 93.4 7.3 0.00016 39.0 18.2 148 86-248 45-207 (351)
79 PF13859 BNR_3: BNR repeat-lik 91.9 1 2.2E-05 45.1 9.4 148 60-230 62-216 (310)
80 PF02435 Glyco_hydro_68: Levan 87.3 9.8 0.00021 39.6 12.5 128 68-206 143-320 (428)
81 COG1621 SacC Beta-fructosidase 85.2 13 0.00027 39.6 12.3 97 126-232 49-153 (486)
82 PF13810 DUF4185: Domain of un 84.3 33 0.00071 34.4 14.5 155 57-225 93-271 (316)
83 COG3940 Predicted beta-xylosid 83.0 7.5 0.00016 36.6 8.5 103 64-173 137-248 (324)
84 KOG0228 Beta-fructofuranosidas 81.8 19 0.00041 38.2 11.7 91 127-227 68-167 (571)
85 PTZ00334 trans-sialidase; Prov 78.0 18 0.00038 40.6 10.8 88 121-228 263-351 (780)
86 PF03664 Glyco_hydro_62: Glyco 71.7 1E+02 0.0022 29.9 13.9 72 58-139 76-153 (271)
87 PF13810 DUF4185: Domain of un 70.4 21 0.00045 35.8 8.4 92 127-226 103-209 (316)
88 PLN03207 stomagen; Provisional 28.5 26 0.00057 28.8 0.8 15 8-22 16-30 (113)
89 PF05545 FixQ: Cbb3-type cytoc 26.1 30 0.00064 24.5 0.7 24 6-29 13-36 (49)
90 PF02012 BNR: BNR/Asp-box repe 20.8 77 0.0017 16.0 1.3 11 150-164 2-12 (12)
No 1
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-90 Score=691.24 Aligned_cols=402 Identities=59% Similarity=1.050 Sum_probs=372.9
Q ss_pred hHHHHHHHHHHHhhceeeeecccccCcCcccc-CCCCCCCCCCccccccCCCCCccCCcceEEECCEEEEEEeeCCCCCC
Q 014220 5 YLSLFLFFALFLGHGVVELQASHHVYRNLQTS-QSTSPNQPYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAV 83 (428)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Rp~~H~~p~~gw~nDPng~~~~~G~YHlFYq~~p~~~~ 83 (428)
-++|+|..+|+|.|+|.-+.+.|+.|..|+.. +....+.++||.|||+|++|||||| +|++|.|||||||||+++.
T Consensus 8 ~~~l~l~~~~~~~~~vk~~da~~~~~~~l~~~s~~~~~n~~~Rp~~HFqP~k~wMN~P---~~ykG~yHLFyQyNP~gav 84 (571)
T KOG0228|consen 8 LVLLLLLVTLNLTNYVKGLDAFHQNYAGLQSESPSNTVNQPDRPGFHFQPPKGWMNDP---MYYKGKYHLFYQYNPKGAV 84 (571)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCccccccccCCceeecCCCcccccCc---cccCcEEEEEEecCCCCce
Confidence 46788999999999999999999999999665 4567788999999999999999998 7899999999999999999
Q ss_pred CCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEEcccCCCCcceEEEEEEcCCCCCccceeE
Q 014220 84 WGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWV 163 (428)
Q Consensus 84 ~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~ 163 (428)
||+.+||||+|+||+||+.+|+||.|++++|..|||||||+++++|++++||||.+.+.+|.|.+|+..|.+|+.|+.|.
T Consensus 85 wg~ivWGHavSkDLinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vilytg~d~~~rqVqn~a~p~d~sdp~l~~w~ 164 (571)
T KOG0228|consen 85 WGNIVWGHAVSKDLINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVILYTGIDPNNRQVQNYAYPKDVSDPQLIAWS 164 (571)
T ss_pred eeeeEeeeecchhhccccccCcccCCCCccccCccccceEEEccCCCeEEEecccCcCceEEEEEeccCCCCchhhheee
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred ecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEEEEeCCCCCcEEcccccccCCCCCeeecCc
Q 014220 164 KSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPD 243 (428)
Q Consensus 164 k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~~l~~~~~~~~wECPd 243 (428)
|.++||++.++.-.++....||||+++|.+++|+|+|++|+.++++|.+.+|+|+|+++|+..+.++.....++||||||
T Consensus 165 k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~q~g~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPd 244 (571)
T KOG0228|consen 165 KDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIKQRGKAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPD 244 (571)
T ss_pred cCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecCccceEEEEeccchhhhhcccccccccCccceEECCC
Confidence 99999999765224567789999999999999999999999988899999999999999999888888888899999999
Q ss_pred eEEeccCCCCCccccCCCCCceeEEEEeeCCCCeeeEEEEEeeCCCCcccCCCCCccCCCccccccCCCcccceEeeCCC
Q 014220 244 FFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGKYYASKTFFDGAK 323 (428)
Q Consensus 244 lf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~Y~vG~~d~~~~~f~p~~~~~~~~~~~~lD~G~fYA~qtf~d~~~ 323 (428)
||++..+|++++..+..+...|||+..|..+++.++|+||+||+++.+|+|+..+.+.....+.|||.|||+|||.|..+
T Consensus 245 ffpVs~tg~~g~d~s~~~~~nkhvlkasl~gt~~d~Y~IG~yd~~~~~fvpd~~~~~~~~dlr~Dyg~~YASkTFfds~~ 324 (571)
T KOG0228|consen 245 FFPVSITGTDGLDWSLFGSINKHVLKASLGGTSNDQYFIGTYDGEKDTFVPDDGFSRVSVDLRYDYGKYYASKTFFDSVK 324 (571)
T ss_pred cEEecccCCCCceEEEeccccccccccccCCceeEEEEEecccCCcceeeccCCcccccccccccchhhhhhhhhccccC
Confidence 99999999999998877766799999999888899999999999888999998776654566899999999999999989
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCcccccccEEEEEec-CCCeEEecchHHHHHhhhcceeccceEeeCCcEEEEcCccce
Q 014220 324 NRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLDK-SGKHLVQWPVVEIEKLRVNQVQVPSKLLKGGSVIEVTGVTAA 402 (428)
Q Consensus 324 gr~il~gW~~~~~~~~~~~~~gW~g~lslPR~l~l~~-dG~~L~q~Pv~el~~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (428)
+|||+|||++++++..+...+||+|.|++||+++|+. .|+.|.|.|++|++.||...+...+..+.++..+++.++++.
T Consensus 325 ~rrIlwgWa~es~~~~dd~~kgw~g~qtipRki~Ld~~s~k~l~qwpv~eie~Lr~~~v~~~~~~~~~g~~~~v~~~t~~ 404 (571)
T KOG0228|consen 325 GRRILWGWASESDYTNDDPTKGWRGLQTIPRKIWLDTESGKQLTQWPVEEIEPLRLSNVKMDNKLFKPGSLNEVSGITAA 404 (571)
T ss_pred CcEEEEEecccCcccccchhcccccccccceEEEeeccCCCcccccchheeecccccccCccccccCCceeEEecccccc
Confidence 9999999999999988889999999999999999997 788999999999999999999888888889999999999999
Q ss_pred EEEEEEE
Q 014220 403 QVSSCLY 409 (428)
Q Consensus 403 ~~~~~~~ 409 (428)
|+|+|+.
T Consensus 405 q~dvev~ 411 (571)
T KOG0228|consen 405 QADVEVT 411 (571)
T ss_pred cccceEE
Confidence 9987776
No 2
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-85 Score=669.38 Aligned_cols=326 Identities=34% Similarity=0.661 Sum_probs=280.3
Q ss_pred cCCCCCCCCCCccccccCCCCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccC
Q 014220 36 SQSTSPNQPYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDI 115 (428)
Q Consensus 36 ~~~~~~~~~~Rp~~H~~p~~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~ 115 (428)
...+...++|||.|||+||.||||||||++|++|+|||||||+|.++.||+++||||+|+||+||+++|+||.|+.++|.
T Consensus 19 ~~~~~~~~~~Rp~yHftP~~G~mNDPNG~iy~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~~d~ 98 (486)
T COG1621 19 ISESVAKSPYRPQYHFTPPTGWLNDPNGLIYFDGKYHLFYQYNPFGAAHGPKHWGHAVSKDLVHWEHLPIALAPDDDYDS 98 (486)
T ss_pred hhhhccCCCCCceeeecCCcCceECCCceeEECCEEEEEEecCCCCCCCCCceeeeeccCCcccceECCceecCCCcccc
Confidence 33456669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeEEEcCCCceEEEEcccCC----CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEE
Q 014220 116 NGCWSGSATILPGEKPAIFYTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAW 191 (428)
Q Consensus 116 ~gv~SGsav~~~dg~~~l~YTg~~~----~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~ 191 (428)
+||||||||++ +|...+||||+.+ .+.+.|++|+|+|+ .+|+|+.+|||+..| +++ +.+||||+|+|
T Consensus 99 ~g~ySGSAV~~-~~~l~lfytg~v~~~~~~r~~~Q~iA~s~dg-----~~f~K~~~~~i~~~p--~~~-t~hFRDPKv~w 169 (486)
T COG1621 99 HGCYSGSAVVD-DGNLSLFYTGNVRDSNGIRQQTQCIAYSEDG-----GTFEKYSGNPIIDQP--EGY-TPHFRDPKVVW 169 (486)
T ss_pred CCceeeeEEEe-CCcEEEEEccceeccCCcceeEEEEEEEcCC-----CceEeccCCceecCC--Ccc-cccCCCCcccc
Confidence 99999999984 8999999999865 26779999999995 578887778999887 665 89999999888
Q ss_pred ECCCCeEEEEEeeec-CCccEEEEEEeCCCCCcEEccccccc-CCCCCeeecCceEEeccCCCCCccccCCCCCceeEEE
Q 014220 192 LGPDKRWRVIIGSKI-NRKGLAILYRSKDFVHWIKAKHPLHS-VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLK 269 (428)
Q Consensus 192 ~~~~g~y~Mv~ga~~-~~~G~i~ly~S~Dl~~W~~~~~~l~~-~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~ 269 (428)
. ++++|||++||+. +..|+|++|+|+||++|++.+++... ...++||||||||+|+.. +.+ .+|++.
T Consensus 170 ~-~~~~~~~mlgAq~~~~~g~i~lY~S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~~~--~~~--------~~~pqg 238 (486)
T COG1621 170 D-EGGKWWMMLGAQGEDLKGTILLYESDDLKNWQFTGEFGLEQGGLGYMWECPDLFELDGE--DVL--------LFWPQG 238 (486)
T ss_pred c-CCCcEEEEEEEecCCCCceEEEEeCCCccCcEEEEeeccCCCceeeEEECCCeEEecCc--Cce--------EEccee
Confidence 7 7889999999987 45899999999999999999875555 345679999999999943 332 466666
Q ss_pred EeeCC-----CCeeeEEEEEeeCCCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCCC--CCC
Q 014220 270 VSLDD-----TKHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSV--NDD 341 (428)
Q Consensus 270 ~s~~~-----~~~~~Y~vG~~d~~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~~--~~~ 341 (428)
.+.++ ...+.|++|+||+. +|.+... .+++||+|+ |||+|||.++ +||||++|||++|+.. .++
T Consensus 239 ~~~~~~~~~n~~~~~Y~vG~~dg~--~f~~~~~-----~~~~LD~G~DfYApQtf~~~-dgrri~igWmg~w~~~~~~PT 310 (486)
T COG1621 239 LSINGGEYDNIYQSGYFVGDFDGK--EFKLDDG-----QFRELDFGFDFYAPQTFLDP-DGRRILIGWMGNWDYTNNYPT 310 (486)
T ss_pred eecCCCcCCCcceeEEEEEeeccc--eeEecCC-----CceecccCccccceeeccCC-CCCEEEEEeccCccccCCCCc
Confidence 66543 35689999999987 5655542 367999999 9999999986 7999999999999976 566
Q ss_pred CCCCCcccccccEEEEEecCCCeEEecchHHHHHhhhcceeccceEeeCC
Q 014220 342 VKKGWAGIQAIPRKLWLDKSGKHLVQWPVVEIEKLRVNQVQVPSKLLKGG 391 (428)
Q Consensus 342 ~~~gW~g~lslPR~l~l~~dG~~L~q~Pv~el~~Lr~~~~~~~~~~~~~~ 391 (428)
...+|+|||||||||+|+ +| +|+|+|++||++||.++....+..+++.
T Consensus 311 ~~~~w~~~mTlpRel~l~-~~-~L~Q~Pi~~l~~lr~~~~~~~~~~~~~~ 358 (486)
T COG1621 311 IDEGWRGAMTLPRELTLE-DG-KLYQTPVRELESLRKPEEAAHNTTLSGN 358 (486)
T ss_pred cccCcCccceeeEEEEEc-CC-eEEecchHHHHhhhcccccccccccccc
Confidence 678999999999999996 57 6999999999999999666666555443
No 3
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=100.00 E-value=2.1e-77 Score=621.41 Aligned_cols=308 Identities=33% Similarity=0.590 Sum_probs=265.0
Q ss_pred CCCCCCCCccccccCCCCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCe
Q 014220 39 TSPNQPYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGC 118 (428)
Q Consensus 39 ~~~~~~~Rp~~H~~p~~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv 118 (428)
...+++|||+|||+|+.||||||||+++++|+||||||++|.++.||+++||||+|+||+||+++++||.|++.+|+.||
T Consensus 7 ~~~~~~~rp~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~G~ 86 (445)
T TIGR01322 7 RALQSEWRPTFHIQPQTGLLNDPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKDLVHWEDEGVALAPDDPYDSHGC 86 (445)
T ss_pred hhccCCcCccCccCCCcCCccCCCcceEECCEEEEEEccCCCCCccCceEEEEEECCCccccEECCccCcCCCcccCCce
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeEEEcCCCceEEEEcccCC----CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECC
Q 014220 119 WSGSATILPGEKPAIFYTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGP 194 (428)
Q Consensus 119 ~SGsav~~~dg~~~l~YTg~~~----~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~ 194 (428)
|||||++ .+|+++|||||+.. ...+.|++|+|.|+ .+|+|.. +|||.++ +.....+||||+|+ + .
T Consensus 87 ~sGsav~-~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg-----~~~~k~~-~pvi~~~--~~~~~~~fRDP~V~-~-~ 155 (445)
T TIGR01322 87 YSGSAVD-NNGQLTLMYTGNVRDSDWNRESYQCLATMDDD-----GHFEKFG-IVVIELP--PAGYTAHFRDPKVW-K-H 155 (445)
T ss_pred EECeEEe-eCCEEEEEEeccccCCCCCeeEEEEEEEcCCC-----CeEEECC-CceEeCC--CCCCcCcCCCCcEE-e-E
Confidence 9999987 58999999999753 24578999999885 5899974 5999765 33345789999974 4 3
Q ss_pred CCeEEEEEeeec-CCccEEEEEEeCCCCCcEEcccccccC-----CCCCeeecCceEEeccCCCCCccccCCCCCceeEE
Q 014220 195 DKRWRVIIGSKI-NRKGLAILYRSKDFVHWIKAKHPLHSV-----KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVL 268 (428)
Q Consensus 195 ~g~y~Mv~ga~~-~~~G~i~ly~S~Dl~~W~~~~~~l~~~-----~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl 268 (428)
+|+|||++|++. +..|++++|+|+||++|++.+.+.... ..+.|||||+||+|+ | ||||
T Consensus 156 ~g~~~M~~g~~~~~~~g~i~ly~S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~--~-------------k~vL 220 (445)
T TIGR01322 156 NGHWYMVIGAQTETEKGSILLYRSKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLD--G-------------QDVL 220 (445)
T ss_pred CCEEEEEEEEecCCCceEEEEEECCCcccCeEecccccccccccCCccceEECCeEEEEC--C-------------cEEE
Confidence 689999999986 456899999999999999987544332 235699999999997 4 7888
Q ss_pred EEeeCCC----------CeeeEEEEEeeCCCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCC
Q 014220 269 KVSLDDT----------KHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSS 337 (428)
Q Consensus 269 ~~s~~~~----------~~~~Y~vG~~d~~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~ 337 (428)
++|.++. ..+.|++|+||.++.+|+|++. .+++|+|+ |||+|||.++ +||||+||||++++.
T Consensus 221 ~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~------~~~lD~G~dfYA~qtf~~~-~gr~i~~gW~~~~~~ 293 (445)
T TIGR01322 221 LFSPQGLDASGYDYQNIYQNGYIVGQLDYEAPEFTHGTE------FHELDYGFDFYAPQTFLAP-DGRRILVAWMGLPEI 293 (445)
T ss_pred EEeccccCcccccccccccceeEEEEEECCCCEEecCCC------CceeccCcCceeeeeEECC-CCCEEEEEeCCCCcc
Confidence 8886541 2367999999987789987643 46899998 9999999986 699999999999987
Q ss_pred CCCCCCCCCcccccccEEEEEecCCCeEEecchHHHHHhhhcce
Q 014220 338 VNDDVKKGWAGIQAIPRKLWLDKSGKHLVQWPVVEIEKLRVNQV 381 (428)
Q Consensus 338 ~~~~~~~gW~g~lslPR~l~l~~dG~~L~q~Pv~el~~Lr~~~~ 381 (428)
..++.+.+|+|+|||||+|+|+ +| +|+|+|++||++||.+..
T Consensus 294 ~~~~~~~~W~g~lslpR~l~l~-~g-~L~~~Pv~el~~lr~~~~ 335 (445)
T TIGR01322 294 DYPTDRDGWAHCMTLPRELTLK-DG-KLVQTPLRELKALRTEEH 335 (445)
T ss_pred CCCCccCCcccccccCEEEEEe-CC-eEEEEEhHHHHHHhcCcc
Confidence 6666778999999999999998 67 699999999999998654
No 4
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=100.00 E-value=1e-75 Score=607.27 Aligned_cols=309 Identities=48% Similarity=0.911 Sum_probs=257.1
Q ss_pred cccCCCCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCC
Q 014220 50 HFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGE 129 (428)
Q Consensus 50 H~~p~~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg 129 (428)
||+|+.||||||||++|++|+||||||++|.++.||+++||||+|+||+||+++++||.|+..+|+.|||||||+++ +|
T Consensus 1 H~~p~~gw~NDPnGl~~~~G~yHlFyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~~-~~ 79 (437)
T smart00640 1 HFQPPKGWMNDPNGLIYYKGKYHLFYQYNPFGPVWGNIHWGHAVSKDLVHWTHLPVALAPDEWYDSNGVFSGSAVID-PG 79 (437)
T ss_pred CCCCCcCccCCCCeeeEECCEEEEEEecCCCCCCCCCeEEEEEEcCCcceeeecCcccCCCCcCCCCcEEEEEEEEC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 77
Q ss_pred ceEEEEcccCCC------CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEe
Q 014220 130 KPAIFYTGIDPH------NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (428)
Q Consensus 130 ~~~l~YTg~~~~------~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~g 203 (428)
++++||||+... ..+.|.+|.+++. +.+|+|+++|||+.++ ++....+||||+|+|. ++++|||++|
T Consensus 80 ~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d----~~~w~k~~~~Pvi~~~--p~~~~~~fRDP~Vf~~-~~~~~~m~~g 152 (437)
T smart00640 80 NLSLLYTGNVAIDTNVQVQRQAQQLAASDDL----GGTWTKYPGNPVLVPP--PGIGTEHFRDPKVFWY-DGDKWYMVIG 152 (437)
T ss_pred ceEEEEcCCcccccccCcccEEEEEEEECCC----CCeeEECCCCcEEeCC--CCCCCCCcCCCCccEE-CCCEEEEEEE
Confidence 799999997421 2233434444432 4899998779999776 5556789999998776 4479999999
Q ss_pred eec-CCccEEEEEEeCCCCCcEEccccccc--CCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCeeeE
Q 014220 204 SKI-NRKGLAILYRSKDFVHWIKAKHPLHS--VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYY 280 (428)
Q Consensus 204 a~~-~~~G~i~ly~S~Dl~~W~~~~~~l~~--~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~Y 280 (428)
++. ++.|+|++|+|+||++|++.+.++.. ...+.||||||||+|+.+| .+.||||++|+++...+.|
T Consensus 153 ~~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~----------~~~~~vLi~s~~g~~~~~y 222 (437)
T smart00640 153 ASDEDKTGIALLYRSTDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDG----------DTSKHVLKVSPQGGSGNYY 222 (437)
T ss_pred EEecCCCeEEEEEECCCcccCeECCcccccCCCCccceEECCcEEEeCCCC----------CceeEEEEECcCCCCccEE
Confidence 876 45799999999999999998865443 2345899999999998543 2369999999987678899
Q ss_pred EEEEeeCCCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCCC-CCCCCCCCcccccccEEEEE
Q 014220 281 TVGTYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSV-NDDVKKGWAGIQAIPRKLWL 358 (428)
Q Consensus 281 ~vG~~d~~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~~-~~~~~~gW~g~lslPR~l~l 358 (428)
.+|.++++ .+|+|+.... ....+++|+|+ |||+|||.+++++|+||||||++++.. ......+|+|+|||||+|+|
T Consensus 223 ~~G~~~g~-~~f~~~~~~~-~~~~~~lD~G~dfYA~qt~~~~~~~r~i~~gW~~~~~~~~~~~p~~~W~g~~tlPRel~l 300 (437)
T smart00640 223 FVGYFDGS-DQFTPDDPED-VGIGLRLDYGFDFYASQTFYDPDGNRRILIGWMGEWDSYADDVPTKGWAGALSLPRELTL 300 (437)
T ss_pred EEEEEcCc-eeEeECCccc-cCccceEecCCCceeeeeeecCCCCcEEEEEecCCCccccccCCCCCccccceeCeEEEE
Confidence 99999863 4798875421 12345899998 999999998755699999999999742 22233899999999999999
Q ss_pred e-cCCCeEEecchHHHHHhhhc
Q 014220 359 D-KSGKHLVQWPVVEIEKLRVN 379 (428)
Q Consensus 359 ~-~dG~~L~q~Pv~el~~Lr~~ 379 (428)
+ ++| +|+|+|++||++||..
T Consensus 301 ~~~~g-~L~~~Pv~el~~lr~~ 321 (437)
T smart00640 301 DKTGG-KLLQWPVEELESLRNV 321 (437)
T ss_pred EecCC-EEEEeecHHHHhhhCc
Confidence 5 567 6999999999999954
No 5
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=100.00 E-value=6.2e-77 Score=590.55 Aligned_cols=300 Identities=41% Similarity=0.814 Sum_probs=247.2
Q ss_pred cccCCCCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCC
Q 014220 50 HFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGE 129 (428)
Q Consensus 50 H~~p~~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg 129 (428)
||+|+.||||||||++|++|+||||||++|+++.|++++||||+|+|||||+++++||.|++.+|+.||||||++++ ++
T Consensus 1 H~~p~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~d~~g~~SGs~~~~-~~ 79 (308)
T PF00251_consen 1 HFTPPKGWMNDPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKDLVHWEHLPVALPPDEEYDADGCFSGSAVVD-DD 79 (308)
T ss_dssp SBB-SSEEEEEEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESSSSSEEEEEEEE-SSSGGGTTEEEEEEEEEE-TT
T ss_pred CCCCCCCCeECCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCCCCCceeCCceEcccccCCcCccCcceEEEE-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 66
Q ss_pred ceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecC-CCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCC
Q 014220 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSP-KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR 208 (428)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~-~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~ 208 (428)
++++||||+.+...+.|++|+|.|.+ .+|+|++ +||||..+ +.....+||||+|+|++ +++|+|++|++..+
T Consensus 80 ~~~~~YTg~~~~~~~~q~~A~s~d~~----~~w~k~~~~~pvi~~~--p~~~~~~~RDP~v~~~~-~~~~~m~~g~~~~~ 152 (308)
T PF00251_consen 80 NLVLFYTGNNRDGKQVQCLAYSTDDG----ITWTKYPQGNPVIPEP--PPGDTTDFRDPKVFWRE-DGRWYMLLGAGRDG 152 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEESSTT----SSEEE-TTTCESBESS--STTSCTSEEEEEEEEEC-TTEEEEEEEEEETT
T ss_pred EEEEEEeccCCCCCeEEEEEEECCCC----CceEEcCCCCcEEEec--ccCCCCccccCeEEEec-CCEEEEEEeccccC
Confidence 89999999987568999999996653 8999997 49999753 22267899999988885 69999999999888
Q ss_pred ccEEEEEEeCCCCCcEEcccccccCC-CCCeeecCceEEeccCCCCCccccCCCCCceeEEEEee----CCCCeeeEEEE
Q 014220 209 KGLAILYRSKDFVHWIKAKHPLHSVK-GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSL----DDTKHEYYTVG 283 (428)
Q Consensus 209 ~G~i~ly~S~Dl~~W~~~~~~l~~~~-~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~----~~~~~~~Y~vG 283 (428)
.|+|++|+|+||++|++.+.+..... .+.||||||||+|+..+.. ....+|||++|. .....+.|++|
T Consensus 153 ~g~i~~y~S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~-------~~~~~~vl~~s~~g~~~~~~~~~Y~vG 225 (308)
T PF00251_consen 153 RGCILLYTSDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDG-------TGKWVWVLIFSPQGIEDNGHGTYYMVG 225 (308)
T ss_dssp EEEEEEEEESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSS-------SEEEEEEEEEEEESTTTTTTEEEEEEE
T ss_pred cceEEEEEcCCcccCceeCcccccccccccccccceEEEECCcccc-------cceEEEEEEecccccccccccceEEeE
Confidence 89999999999999999886544432 4789999999999954210 112357899998 34578999999
Q ss_pred EeeCCCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCCCC-CCCCCCCcccccccEEEEEecC
Q 014220 284 TYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVN-DDVKKGWAGIQAIPRKLWLDKS 361 (428)
Q Consensus 284 ~~d~~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~~~-~~~~~gW~g~lslPR~l~l~~d 361 (428)
++|..+++|+++.. ..+++|+|+ |||+|+|.+++++|||+||||++++... ...+.+|+|+|||||+|+|+++
T Consensus 226 ~~d~~~~~f~~~~~-----~~~~lD~G~dfYA~qtf~~~~~~r~i~~gW~~~~~~~~~~~~~~gW~g~lslPR~l~l~~~ 300 (308)
T PF00251_consen 226 DFDFDGGTFTPDDS-----SFQRLDYGFDFYAPQTFYDPDGGRRILIGWMGEWDYNADDYPTYGWAGCLSLPRELTLKDE 300 (308)
T ss_dssp EEETTTTEEEESST-----TSEESBSSSS-EEEEEEEETTTTEEEEEEEES-TTTHHHHCHGHTEE-EE---EEEEEETT
T ss_pred EecCCCCeeeeecc-----ccceeccCccccCCchhcCCCcCcEEEEEEecCCCcccccCCCCCCccEEEeCEEEEEEEC
Confidence 99877789987621 368999999 9999999997555999999999998742 2236899999999999999764
Q ss_pred CCeEEecc
Q 014220 362 GKHLVQWP 369 (428)
Q Consensus 362 G~~L~q~P 369 (428)
+.+|+|+|
T Consensus 301 ~~~L~q~P 308 (308)
T PF00251_consen 301 GGRLYQKP 308 (308)
T ss_dssp SSSEEEEE
T ss_pred CCeEEEcC
Confidence 44799988
No 6
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=100.00 E-value=5.2e-68 Score=523.34 Aligned_cols=286 Identities=40% Similarity=0.725 Sum_probs=245.2
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEE
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFY 135 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~Y 135 (428)
||||||||++|++|+||||||++|.++.|++++||||+|+||+||+++++||.|+..+|..|||||||+++.+|+++|||
T Consensus 1 gw~nDPng~~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~Dlv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~Y 80 (298)
T cd08996 1 GWMNDPNGLVYFNGKYHLFYQYNPFGPVWGNMHWGHATSKDLVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLFY 80 (298)
T ss_pred CCcccCCeeeEECCEEEEEEcCCCCCCCCCCcEEEEEEecCccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEEE
Confidence 79999999999999999999999999999999999999999999999999999988889999999999986449999999
Q ss_pred cccCC---CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC-CccE
Q 014220 136 TGIDP---HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN-RKGL 211 (428)
Q Consensus 136 Tg~~~---~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~-~~G~ 211 (428)
||+.. ...+.|++|+|+|. +.+|+|...+|++.++ .....+||||+|++. +|+|+|++|++.. ..|+
T Consensus 81 Tg~~~~~~~~~~~~~lA~S~dd----g~~w~k~~~~~~~~~~---~~~~~~~RDP~V~~~--~g~~~m~~g~~~~~~~~~ 151 (298)
T cd08996 81 TGNVKLDGGRRQTQCLAYSTDD----GRTFTKYEGNPVIPPP---DGYTTHFRDPKVFWH--DGKWYMVLGAGTEDGTGR 151 (298)
T ss_pred eceeCCCCCceEEEEEEEEcCC----CCEEEECCCCceEcCC---CCCCCcccCCeEEeE--CCEEEEEEEEEecCCCcE
Confidence 99864 46789999999853 3899999888888633 235678999997655 4899999999863 5789
Q ss_pred EEEEEeCCCCCcEEccccc-ccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCC------CeeeEEEEE
Q 014220 212 AILYRSKDFVHWIKAKHPL-HSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDT------KHEYYTVGT 284 (428)
Q Consensus 212 i~ly~S~Dl~~W~~~~~~l-~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~------~~~~Y~vG~ 284 (428)
|.+|+|+||++|++.+... .....+.|||||+||++++. .||||++|.+.. ..+.|++|+
T Consensus 152 i~ly~S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~-------------~k~vL~~s~~~~~~~~~~~~~~y~~G~ 218 (298)
T cd08996 152 ILLYRSDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDVE-------------GKWVLIFSPQGLEPEGNGSGTGYLVGD 218 (298)
T ss_pred EEEEECCCCCCCEEcceecccCCCccceEeCCcEEEECCC-------------CeEEEEECCCCCCCCCCccceEEEEEE
Confidence 9999999999999986432 23345679999999999842 399999998743 457999999
Q ss_pred eeCCCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCCCCCCCCCCCcccccccEEEEEecCCC
Q 014220 285 YSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLDKSGK 363 (428)
Q Consensus 285 ~d~~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~~~~~~~~gW~g~lslPR~l~l~~dG~ 363 (428)
+++. .|+++. ...+++|+|+ |||+|+|.++ +||+|+||||++++...+..+.+|+|+|||||+|+|++++
T Consensus 219 ~~~~--~~~~~~-----~~~~~lD~G~dfYA~q~~~~~-~~r~i~~gW~~~~~~~~~~~~~~w~g~ls~pr~l~l~~~~- 289 (298)
T cd08996 219 FDGT--TFTFDH-----TEFGELDYGFDFYAPQTFVDP-DGRRILIGWMGNWDYEYPTPEDGWAGCLTLPRELSLKDGG- 289 (298)
T ss_pred EECC--CCeEec-----CCceEecCCCCeEeCceeeCC-CCCEEEEEEecCCCcCCCCCCCCceeeeEeCEEEEEccCC-
Confidence 9975 565541 1257899998 9999999986 7999999999999987777889999999999999999866
Q ss_pred eEEecchHH
Q 014220 364 HLVQWPVVE 372 (428)
Q Consensus 364 ~L~q~Pv~e 372 (428)
+|.|+|++|
T Consensus 290 ~l~~~P~~e 298 (298)
T cd08996 290 RLYQRPVRE 298 (298)
T ss_pred EEEEEeCCC
Confidence 799999976
No 7
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=100.00 E-value=4.1e-56 Score=435.08 Aligned_cols=267 Identities=28% Similarity=0.480 Sum_probs=221.6
Q ss_pred cCCcceEEECCEEEEEEeeCCCCCCC--CCcEEEEEEeCCCCCCccCCCCCCCC-CCccCCCeEeeeEEEcCCCceEEEE
Q 014220 59 NDPNGVMIYKGIYHLFYQYNPKGAVW--GNIVWAHSTSKDLINWIPHDPAIYPS-QQSDINGCWSGSATILPGEKPAIFY 135 (428)
Q Consensus 59 nDPng~~~~~G~YHlFYq~~p~~~~~--g~~~Wgha~S~Dlv~W~~~~~al~P~-~~~D~~gv~SGsav~~~dg~~~l~Y 135 (428)
.|| .++|++|+||||||++|.+..| ++++||||+|+||+||+++++||.|. ..+|+.|||||||++ .+|+++|||
T Consensus 1 ~d~-~~~~~~G~yhlfyq~~p~~~~~~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs~~~-~~g~~~l~Y 78 (280)
T cd08995 1 GDP-MPFYDDGTFHIFYLHDPRNGPPEGLRHPWSLLTTKDLVNYEDHGEAIPRGGDEDDDDAIGTGSVIK-GEGTYHAFY 78 (280)
T ss_pred CCc-cceEECCEEEEEEEcCCCCCCcccCCceEEEEEccCcCccEECcceecCCCCcccccCceEeEEEe-eCCEEEEEE
Confidence 488 6899999999999999998887 89999999999999999999999884 567789999999987 489999999
Q ss_pred cccCCC--CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-----CC
Q 014220 136 TGIDPH--NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-----NR 208 (428)
Q Consensus 136 Tg~~~~--~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-----~~ 208 (428)
||+... ..+.|++|+|.|+ .+|+|...+||+.++ +++...+||||+|++.+++|+|+|+++++. +.
T Consensus 79 Tg~~~~~~~~~~i~~A~S~D~-----~~w~k~~~~pv~~~~--~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~ 151 (280)
T cd08995 79 TGHNLDGKPKQVVMHATSDDL-----ITWTKDPEFILIADG--EGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNR 151 (280)
T ss_pred EEECCCCCCcEEEEEEECCCC-----CccEECCCCeecCCc--cccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCC
Confidence 998642 5678999999874 799998778988644 455557899999876545799999999876 35
Q ss_pred ccEEEEEEeCCCCCcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC-CCeeeEEEEEeeC
Q 014220 209 KGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD-TKHEYYTVGTYST 287 (428)
Q Consensus 209 ~G~i~ly~S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~-~~~~~Y~vG~~d~ 287 (428)
.|+|.+|+|+||++|++.+ ++.......|||||++|+++ | +|+|++|.+. .....|++|+..
T Consensus 152 ~g~i~~~~S~Dl~~W~~~~-~~~~~~~~~~~E~P~l~~~~--g-------------~~~L~~s~~~~~~~~~Y~~~~~~- 214 (280)
T cd08995 152 RGCIALFTSKDLKNWEYEE-PFYAPGLYFMPECPDLFKMG--D-------------WWYLVYSEFSENRKTHYRVSKSP- 214 (280)
T ss_pred CeEEEEEEeCCcCcceecC-ceecCCCcceeecceEEEEC--C-------------EEEEEEEeccCCCcEEEEEeCCC-
Confidence 7899999999999999876 45544456799999999997 4 8999999863 345789999622
Q ss_pred CCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCCCCCCCCCCCcccccccEEEEEecCCC
Q 014220 288 AKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLDKSGK 363 (428)
Q Consensus 288 ~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~~~~~~~~gW~g~lslPR~l~l~~dG~ 363 (428)
.+.|.... ...|| |+ |||+|||.++ |||||||||++++...++.+.||+|||| ||+|.+.+||.
T Consensus 215 -~g~~~~~~-------~~~~d-g~dfYA~~~~~~~--~r~i~~gw~~~~~~~~~~~~~~w~~~l~-~~~~~~~~~g~ 279 (280)
T cd08995 215 -FGPWRAPD-------DDTFD-GRAFYAAKTASDG--TRRFLFGWVPTKAGNDDDGNWEWGGNLV-VHELIQNEDGT 279 (280)
T ss_pred -CCCeEcCC-------cCccC-cccccceeEEEeC--CeEEEEEEecCCCCcccccCCccceEEE-eeEEEECCCCc
Confidence 34553322 23589 98 9999999985 8999999999999877777899999998 67888888884
No 8
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=100.00 E-value=6.8e-39 Score=310.75 Aligned_cols=242 Identities=27% Similarity=0.399 Sum_probs=190.9
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCC-CcEEEEEEeCCCCCCccCCCCC--CCCCCccCCCeEeeeEEEcCCCceEEEEc
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWG-NIVWAHSTSKDLINWIPHDPAI--YPSQQSDINGCWSGSATILPGEKPAIFYT 136 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g-~~~Wgha~S~Dlv~W~~~~~al--~P~~~~D~~gv~SGsav~~~dg~~~l~YT 136 (428)
||+.+. |+||||||++|.+..++ ...|+||+|+||+||++.+.+| .|...+|..+||+|+++...+|+++||||
T Consensus 8 ~~~~~~---g~yhlfy~~~~~~~~~~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Yt 84 (276)
T cd08979 8 NPAVVV---GKYHLFYLAAPRGGGDGNTSRIGAASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFYT 84 (276)
T ss_pred CCceEe---eeEEEEEEccCcCcCCCCcceeEEEEcCCCCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEEe
Confidence 555443 89999999999876644 4568999999999999999887 55667888999999999864499999999
Q ss_pred ccCC--CCcceEEEEEEcCCCCCccceeEecCCCcee-----cCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-CC
Q 014220 137 GIDP--HNRQVQNLAVPKNLSDPYLREWVKSPKNPLM-----APDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-NR 208 (428)
Q Consensus 137 g~~~--~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi-----~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-~~ 208 (428)
+... ...+.+++|+|+|+ .+|+|.+.+|++ ..+ ......++|||+|++.+.+|+|+|++++.. ..
T Consensus 85 ~~~~~~~~~~~i~~A~S~D~-----~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~ 157 (276)
T cd08979 85 GYDRPKGAVQRIGLATSKDL-----IHWTKHGPNPVPRWYESGNP--GPWDDHAWRDPAVVRDEEGGGWRMYYGARDADE 157 (276)
T ss_pred cccCCCCCcceEEEEECCCC-----CceEECCCCcceeeeecCCC--CCcccccccccEEEEECCCCEEEEEEEeEccCC
Confidence 9863 45788999999884 789998766653 122 223456899999876533489999999876 34
Q ss_pred ccEEEEEEeCCCCCcEEccccc--ccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC-CCeeeEEEEEe
Q 014220 209 KGLAILYRSKDFVHWIKAKHPL--HSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD-TKHEYYTVGTY 285 (428)
Q Consensus 209 ~G~i~ly~S~Dl~~W~~~~~~l--~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~-~~~~~Y~vG~~ 285 (428)
.++|.+++|+|+++|++.+... .......++|||++|+++ | +|+|+++... .....|.+|.+
T Consensus 158 ~~~i~~a~S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~--g-------------~~~l~~~~~~~~~~~~y~vg~~ 222 (276)
T cd08979 158 RGAIGLATSPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKID--G-------------RWYLLYSGRNEDAKTGYRVGTA 222 (276)
T ss_pred CcEEEEEECCCCCcceECCCCCCCCCcccCCcCccceEEEEC--C-------------EEEEEEEecCccCCccEEEEec
Confidence 6889999999999999876531 222345799999999997 4 8999998764 45688999987
Q ss_pred eCCCCcccCCCCCccCCCccccccCC-CcccceEeeCCCCcEEEEEeccCC
Q 014220 286 STAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNES 335 (428)
Q Consensus 286 d~~~~~f~p~~~~~~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~ 335 (428)
+.. .++|.. ...+|.|. |||+|++.+.+++|++++|||.++
T Consensus 223 ~~~--~~~~~~-------~~~~~~g~~~ya~~~~~~~~~~~~~~~gw~~~~ 264 (276)
T cd08979 223 LFG--PGRPLT-------LAELLDRTDLYAARPVPDGEGGGVVLEGFVQFG 264 (276)
T ss_pred ccC--Cccccc-------cccccCCCCceeEEeccccCCCcEEEEEEeecc
Confidence 654 455542 35799999 999999987546999999999987
No 9
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=100.00 E-value=3.3e-36 Score=292.25 Aligned_cols=270 Identities=29% Similarity=0.444 Sum_probs=204.2
Q ss_pred cCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCC----CCCCccCCCeEeeeEEEcCCCceEEE
Q 014220 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY----PSQQSDINGCWSGSATILPGEKPAIF 134 (428)
Q Consensus 59 nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~----P~~~~D~~gv~SGsav~~~dg~~~l~ 134 (428)
|||+ +++++|+||||||++|.+ +.++|+|++|+||+||++.+.++. |...++..++|+|+++...+|+++||
T Consensus 1 ~DP~-i~~~~g~yyl~~~~~~~~---~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~ 76 (286)
T cd08772 1 ADPN-LIKYNGTYYIFFSGDDKN---GNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLY 76 (286)
T ss_pred CCCe-EEEECCEEEEEEEccCCC---CCceEEEEECCCcCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEE
Confidence 7999 899999999999999865 678999999999999999998874 66667788999999998644999999
Q ss_pred EcccCC-CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-CCccEE
Q 014220 135 YTGIDP-HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-NRKGLA 212 (428)
Q Consensus 135 YTg~~~-~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-~~~G~i 212 (428)
||+... ...+.+++|+|+|.. ..|++...+|++... ........+|||+|+ .+++|+|||++++.. ...+.|
T Consensus 77 yt~~~~~~~~~~i~~a~s~d~~----~~~~~~~~~~~~~~~-~~~~~~~~~~Dp~v~-~d~dG~~y~~~~~~~~~~~~~i 150 (286)
T cd08772 77 YTDVSFTKNQQTIGVATAEDGN----GPWTDYIGGPVLPDN-PPAADVSNFRDPFVF-EDDDGKWYLVFGSGDHHNFGGI 150 (286)
T ss_pred EEeecCCCCceeEEEEEcCCCC----CCCccccccccccCC-CCccccccccCCeEE-EcCCCCEEEEEccccCCCCCeE
Confidence 999753 356789999998864 356665455655322 022244678999975 446699999999865 245689
Q ss_pred EEEEeCCCCCcEEcccc--cccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC------CCeeeEEEEE
Q 014220 213 ILYRSKDFVHWIKAKHP--LHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD------TKHEYYTVGT 284 (428)
Q Consensus 213 ~ly~S~Dl~~W~~~~~~--l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~------~~~~~Y~vG~ 284 (428)
.+++|+|+.+|+..+.+ ........++|||++|+++ | +|+|++|... .....|++++
T Consensus 151 ~~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~--g-------------~~yL~~s~~~~~~~~~~y~~~~~~~~ 215 (286)
T cd08772 151 FLYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKN--G-------------KYYLFYSINGTGRVDSTYSIGYARSE 215 (286)
T ss_pred EEEEcCCCCCcccccceeeEeeccCCCceeccEEEEEC--C-------------EEEEEEEcCCCcCCCCCcceEEEEcc
Confidence 99999999999876543 1223346799999999997 5 8899888754 3456788876
Q ss_pred eeCCCCcccCCCCCc-cCCCccccccCC-CcccceEeeCCCCcEEEEEeccCCCCCCCCCCCCCcccccccEEEE
Q 014220 285 YSTAKDRYVPDEGSV-ESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLW 357 (428)
Q Consensus 285 ~d~~~~~f~p~~~~~-~~~~~~~lD~G~-fYA~qtf~d~~~gr~il~gW~~~~~~~~~~~~~gW~g~lslPR~l~ 357 (428)
.+ .+.|++..... ........|.+. +||+++|.++ +||++|++|+.+++.... ...+|+++|+|||+++
T Consensus 216 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~ 286 (286)
T cd08772 216 SD--TGPYVPKSDTSGGLSLTGGNDGGVGPYHAAAFNDA-GGRVVLVYHAYNVQYADA-PTYGWGRSLAIPRLLW 286 (286)
T ss_pred CC--CCCcccCCCCCCccccccccCCCCCCCccEEEECC-CCCEEEEEEeccCCcccc-ccCCCccccccccccC
Confidence 43 35676543210 001123467777 9999999986 799999999999875333 5579999999999873
No 10
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.95 E-value=9.5e-26 Score=225.10 Aligned_cols=194 Identities=22% Similarity=0.264 Sum_probs=137.3
Q ss_pred CCcceEE-ECCEEEEEEeeCCCC----CCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEE
Q 014220 60 DPNGVMI-YKGIYHLFYQYNPKG----AVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (428)
Q Consensus 60 DPng~~~-~~G~YHlFYq~~p~~----~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~ 134 (428)
|..|-+. ++|..-+|++..|.. +.|+.++|+|++|+||++|++.+. |.|+..+|..+||||||++..||+++||
T Consensus 9 d~~g~~~~~~G~~~vfaL~a~~~~~~~~rh~~~~wgh~~S~dlv~W~~~~~-l~p~~~~d~~g~wSGsa~~~~dg~~~lf 87 (349)
T cd08997 9 DRDGEVASYNGYEVIFALTADRNLDPDDRHGDARIGYFYSRAGGNWIDGGK-VFPDGLSPGSREWSGSATLDDDGTVQLF 87 (349)
T ss_pred CCCCCEEEECCEEEEEEEecCCCCCCCCCcCceEEEEEEeCCCCcccCCCc-cCCCCcccCCCeEcceEEEeCCCeEEEE
Confidence 4444333 566644999887754 468899999999999999999554 6678889999999999998667999999
Q ss_pred EcccCC----CCcceEEEEEEcCCCCCccceeEecC--CCceecCCC------------CCCCCCCCccCCeEEEECCCC
Q 014220 135 YTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSP--KNPLMAPDA------------MNQINTSSFRDPTTAWLGPDK 196 (428)
Q Consensus 135 YTg~~~----~~~~~q~lA~S~D~~d~~l~~w~k~~--~nPvi~~~~------------~~~~~~~~~RDP~V~~~~~~g 196 (428)
|||+.+ .....|++|.+.+.. +..|.+.. ..+++.++. .+.....+||||+|+..+++|
T Consensus 88 YTg~~~~~~~~~~~~Q~ia~a~~~~---~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G 164 (349)
T cd08997 88 YTAVGRKGEPQPTFTQRLALARGTL---SVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETG 164 (349)
T ss_pred EeccccCCCCCCCceEEEEEEECCC---cceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCC
Confidence 999853 245778888776532 22232211 124443220 022235789999975443379
Q ss_pred eEEEEEeeecC-C---------------------------ccEEEEE--EeCCCCCcEEcccccccCC-CCCeeecCceE
Q 014220 197 RWRVIIGSKIN-R---------------------------KGLAILY--RSKDFVHWIKAKHPLHSVK-GTGMWECPDFF 245 (428)
Q Consensus 197 ~y~Mv~ga~~~-~---------------------------~G~i~ly--~S~Dl~~W~~~~~~l~~~~-~~~~wECPdlf 245 (428)
+|||+++++.. . .|+|.++ +|+|+.+|++.+ ||.... ....||||++|
T Consensus 165 ~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~-PL~~a~~v~d~~E~P~v~ 243 (349)
T cd08997 165 KTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLP-PLLEANGVNDELERPHVV 243 (349)
T ss_pred cEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCCCCCCcEEcC-ccccCCCcCCceEcceEE
Confidence 99999998763 2 3666666 667999999986 555432 24579999999
Q ss_pred EeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 246 PVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 246 ~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
+++ | ||+|++|..
T Consensus 244 ~~~--g-------------k~yL~~s~~ 256 (349)
T cd08997 244 FHN--G-------------KYYLFTISH 256 (349)
T ss_pred EEC--C-------------EEEEEEeCC
Confidence 998 5 888888854
No 11
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.91 E-value=4.7e-23 Score=202.63 Aligned_cols=191 Identities=21% Similarity=0.318 Sum_probs=142.2
Q ss_pred ccccCCCCCccCCcceEEE-CCEEEEEEeeCCCCCC---C-CCcEEEEEEeCCCC-CCccCCCCCCCC--CCccCCCeEe
Q 014220 49 YHFQPPKNWINDPNGVMIY-KGIYHLFYQYNPKGAV---W-GNIVWAHSTSKDLI-NWIPHDPAIYPS--QQSDINGCWS 120 (428)
Q Consensus 49 ~H~~p~~gw~nDPng~~~~-~G~YHlFYq~~p~~~~---~-g~~~Wgha~S~Dlv-~W~~~~~al~P~--~~~D~~gv~S 120 (428)
..|+.+..++.+|. +++. +|+||||||..|.+.. | ....|+||+|+|+. +|+..+++|.|+ ..||+.++++
T Consensus 4 ~~~~~~~~~~w~~~-vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~ 82 (291)
T cd08994 4 SGLEDEDYSVWGGS-IIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHN 82 (291)
T ss_pred ceeeeCCeEEEecc-eEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccC
Confidence 46788889999996 6664 5899999999886543 2 24569999999987 899999999887 4688999999
Q ss_pred eeEEEcCCCceEEEEcccCC-------CCcceEEEEEEcCCCCCccceeEecCCCceecCC------------------C
Q 014220 121 GSATILPGEKPAIFYTGIDP-------HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPD------------------A 175 (428)
Q Consensus 121 Gsav~~~dg~~~l~YTg~~~-------~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~------------------~ 175 (428)
++++.. +|+++||||+... ...+.+++|+|.+.. .+|++. .+||+.+. +
T Consensus 83 P~vi~~-~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~----g~w~~~-~~pvl~~~~~~~~~~~~~~p~v~~~~~ 156 (291)
T cd08994 83 PTIKRF-DGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLD----GPWKRS-DQPILEPRPGGWDNLITSNPAVTRRPD 156 (291)
T ss_pred CeEEEE-CCEEEEEEEcccCCcccccCCCCceEEEEEeCCCC----CCcEEC-CCceecCCCCccccccccCCCeEEeCC
Confidence 999874 7999999999753 235677888887632 367764 34555220 0
Q ss_pred ---------------------------CC--------------CCCCCCccCCeEEEECCCCeEEEEEeeecC----Ccc
Q 014220 176 ---------------------------MN--------------QINTSSFRDPTTAWLGPDKRWRVIIGSKIN----RKG 210 (428)
Q Consensus 176 ---------------------------~~--------------~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~----~~G 210 (428)
.. .....++|||+| |+ .+|+|+|+++++.+ ..+
T Consensus 157 g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V-~~-~~g~yym~~~~~~~~~~~~~~ 234 (291)
T cd08994 157 GSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFV-WY-DKGQFHMIVKDMLGYVTGEKG 234 (291)
T ss_pred CCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceE-EE-eCCEEEEEEeecccCcCCCCc
Confidence 00 012346799995 55 35999999998863 468
Q ss_pred EEEEEEeCCCCCcEEccccccc------C---CCCCeeecCceE-Eec
Q 014220 211 LAILYRSKDFVHWIKAKHPLHS------V---KGTGMWECPDFF-PVS 248 (428)
Q Consensus 211 ~i~ly~S~Dl~~W~~~~~~l~~------~---~~~~~wECPdlf-~l~ 248 (428)
+|.+|+|+|+++|++.+.++.. . ....+||||+++ +.+
T Consensus 235 ~i~~a~S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~ 282 (291)
T cd08994 235 GGAYFRSKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDED 282 (291)
T ss_pred eEEEEECCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCC
Confidence 9999999999999998654321 1 136799999999 776
No 12
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.84 E-value=1.5e-19 Score=176.45 Aligned_cols=192 Identities=17% Similarity=0.244 Sum_probs=138.6
Q ss_pred CCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCC-CCccCCCeEeeeEEEcCCCceEE
Q 014220 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPS-QQSDINGCWSGSATILPGEKPAI 133 (428)
Q Consensus 55 ~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~-~~~D~~gv~SGsav~~~dg~~~l 133 (428)
.||++||+ +++++|+||||++....+. ....|.+++|+||+||+.++.+|.+. ..++..++|+++++. .+|+++|
T Consensus 5 ~g~~~DP~-i~~~~g~yY~~~t~~~~~~--~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~wAP~v~~-~~g~yy~ 80 (275)
T cd09004 5 PGWYADPE-IRIFGGTYYIYPTSDGAGG--EQTPFDVFSSKDLVNWTKEGIILDMADVSWANRAAWAPSVIE-RNGKYYF 80 (275)
T ss_pred CCCCCCCC-eEEECCEEEEEEeccCCCC--CeeEEEEEECCCCCCceECcccccccCCcccCCCcCCCeEEE-ECCEEEE
Confidence 46899996 5788999999998765322 24679999999999999999988764 456678999999987 4899999
Q ss_pred EEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEE
Q 014220 134 FYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAI 213 (428)
Q Consensus 134 ~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ 213 (428)
|||+. +.+++|+|++.. ..|++..++|++.+. . .....+||.| |.+++|++||++++.. +...
T Consensus 81 yys~~-----~~i~va~s~~p~----gp~~~~~~~p~~~~~--~--~~~~~iDp~v-f~d~dG~~yl~~~~~~---~~~i 143 (275)
T cd09004 81 YFSAN-----GGIGVAVADSPL----GPFKDALGKPLIDKF--T--FGAQPIDPDV-FIDDDGQAYLYWGGWG---HCNV 143 (275)
T ss_pred EEEcC-----CcEEEEEeCCCC----CCCCCCCCCccccCC--c--CCCCccCCCe-EECCCCCEEEEEcCcC---CEEE
Confidence 99986 457899998764 358874467887543 1 2356899996 4557899999998741 1222
Q ss_pred EEEeCCCCCcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCeeeEEEE
Q 014220 214 LYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVG 283 (428)
Q Consensus 214 ly~S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~Y~vG 283 (428)
+-.|+|+.+|+.....+ ......+.|||.+++.+ | +++|++|........|.++
T Consensus 144 ~~l~~d~~~~~~~~~~~-~~~~~~~~EgP~i~k~~--G-------------~yyl~ys~~~~~~~~Y~~~ 197 (275)
T cd09004 144 AKLNEDMISFDGERDGS-EITPKNYFEGPFMFKRN--G-------------IYYLMWSEGGWTDPDYHVA 197 (275)
T ss_pred EEECCCcccccCcceee-eccCCCceecceEEEEC--C-------------EEEEEEECCCCCCCCceEE
Confidence 33578898886543221 11234589999999987 5 7888888754332334444
No 13
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.83 E-value=1.4e-19 Score=176.20 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=118.9
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCC-CCCCC--CCCccCCCeEeeeEEEcCCCceEEEEc
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHD-PAIYP--SQQSDINGCWSGSATILPGEKPAIFYT 136 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~-~al~P--~~~~D~~gv~SGsav~~~dg~~~l~YT 136 (428)
|| ++++++|+||||||.++.. +.++||||+|+|++||++.+ +.|.| +..++..+|++++++. .+|+++|+||
T Consensus 2 nP-~v~~~~G~y~l~y~~~~~~---~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~-~~g~y~m~Yt 76 (268)
T cd08993 2 NP-AVVYDNGEFYLLYRAAGND---GVIRLGLARSRDGLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVK-IDDTYYITYA 76 (268)
T ss_pred cC-eEEEECCEEEEEEEEECCC---CceEEEEEEECCCceEEECCcceEcCCCCCcccccCccCcEEEE-ECCEEEEEEE
Confidence 68 7899999999999987643 46799999999999999875 34556 5567889999999987 5899999999
Q ss_pred ccCC-CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec---CCccEE
Q 014220 137 GIDP-HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI---NRKGLA 212 (428)
Q Consensus 137 g~~~-~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~---~~~G~i 212 (428)
+... ...+.+++|.|+|+ .+|+|.. . ++. + ..||+.++-...+|+|+|++.... ++.+.|
T Consensus 77 a~~~~~~~~~i~lA~S~D~-----~~W~~~~-~-~~~-~--------~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I 140 (268)
T cd08993 77 ARPNAPNGTRIGLATTKDF-----ITFERLG-T-SLV-P--------NNRDGILFPEKINGKYVMLHRPFEYGGTSPPDM 140 (268)
T ss_pred ccCCCCCCcEEEEEEeCCc-----ceEEEec-c-cCC-C--------CCCCEEEeeEEECCEEEEEEccccCCCCCCCcE
Confidence 9763 35677899999874 7999973 2 221 1 137887432224799999996442 246789
Q ss_pred EEEEeCCCCCcEEcccccccCCCCCeeecC
Q 014220 213 ILYRSKDFVHWIKAKHPLHSVKGTGMWECP 242 (428)
Q Consensus 213 ~ly~S~Dl~~W~~~~~~l~~~~~~~~wECP 242 (428)
.+++|+||.+|+..+ ++... ....||+-
T Consensus 141 ~lA~S~Dl~~W~~~~-~~~~~-~~~~wd~~ 168 (268)
T cd08993 141 WLSFSPDLVHWGNHR-FVLSP-RPNHWEQL 168 (268)
T ss_pred EEEECCCcCccCCCe-EEecC-CCCceeec
Confidence 999999999998765 34332 22346544
No 14
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.82 E-value=7.7e-19 Score=173.34 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=122.8
Q ss_pred ccCCcceEEECCEEEEEEeeCCCCC--CCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEE
Q 014220 58 INDPNGVMIYKGIYHLFYQYNPKGA--VWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFY 135 (428)
Q Consensus 58 ~nDPng~~~~~G~YHlFYq~~p~~~--~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~Y 135 (428)
+.+|. +++.+|+|||||+++|..+ .++.++|+||+|+||++|++.++++. +..++.+++++.+.+|+++|||
T Consensus 79 ~WAP~-v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl~~w~~~~~~~~-----~~~~~iD~~vf~~~dg~~yl~y 152 (294)
T cd08984 79 FWAPE-VVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNLWDWTFVGRVDL-----DSDRVIDACVFKLPDGRWRMWY 152 (294)
T ss_pred eeCce-EEEECCEEEEEEEecCCCCcccCCCcEEEEEECCCcCcceECCcccc-----CCCCcEEeEEEEeCCCEEEEEE
Confidence 56785 7889999999999998653 34578999999999999999887632 2357889999886679999999
Q ss_pred cccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEEE
Q 014220 136 TGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILY 215 (428)
Q Consensus 136 Tg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly 215 (428)
|+.. ....+++|.|.|+ .+|++. .+++... ..++|+|+ + .+|+|||+++. ..| +.+|
T Consensus 153 ~~~~--~~~~~~~a~s~D~-----~~w~~~--~~~i~~~--------~~EgP~v~-k-~~g~yym~~~~---~~g-~~~~ 209 (294)
T cd08984 153 KDER--RGSTTYAADSEDL-----YHWTVE--GPVLGDR--------PHEGPNVF-R-WKGYYWMIIDE---WKG-LGVY 209 (294)
T ss_pred ECCC--CCeEEEEEECCCC-----CEEEeC--CccccCC--------CCCCCCee-E-ECCEEEEEEcC---Cce-EEEE
Confidence 9853 3345678888774 789984 3555321 23799965 4 47899999854 234 6799
Q ss_pred EeCCCCCcEEcccccccC----CCCCeeecCceEEec
Q 014220 216 RSKDFVHWIKAKHPLHSV----KGTGMWECPDFFPVS 248 (428)
Q Consensus 216 ~S~Dl~~W~~~~~~l~~~----~~~~~wECPdlf~l~ 248 (428)
+|+|+.+|++.+.++... ....+.+||++++.+
T Consensus 210 ~S~D~~~W~~~~~~l~~~~~~~~~~~~~~H~~i~~~~ 246 (294)
T cd08984 210 RSKDAENWERQGGILLKPGTRPDDGAKGRHADVVVTG 246 (294)
T ss_pred ECCChhhcEECCeeeccCCCCccccccccCCcEEEeC
Confidence 999999999988766532 123467999999876
No 15
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.80 E-value=5.8e-18 Score=165.75 Aligned_cols=196 Identities=19% Similarity=0.173 Sum_probs=135.8
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCC-ccCCCeEeeeEEEcCCCceEEE
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-SDINGCWSGSATILPGEKPAIF 134 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-~D~~gv~SGsav~~~dg~~~l~ 134 (428)
+.+-||. +++++|+|+||+..... ..|.+++|+||+||+..+.+|.+... ++..++|.++++. .+|+++|+
T Consensus 6 ~~~~DP~-i~~~~g~yy~~~t~~~~------~~i~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~v~~-~~g~y~~~ 77 (287)
T cd08999 6 GDFPDPS-VIRVDGTYYAYATNGNG------PNVPIATSTDLVNWTYLGDAFPKLPRWWTGGDFWAPDVSY-VNGKYVLY 77 (287)
T ss_pred CCCCCCe-EEEECCEEEEEEeCCCC------CcEEEEECCCCCCcEECCcccCCCCCcccCCCccCceEEE-ECCEEEEE
Confidence 4567995 77889999999986532 57999999999999999988877655 4557888888876 48999999
Q ss_pred EcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCcc---
Q 014220 135 YTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKG--- 210 (428)
Q Consensus 135 YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G--- 210 (428)
|++.... ..+.+++|+|+|.. ..|++... +++..+ . .....+||.|+ .+++|++||++++.....+
T Consensus 78 y~~~~~~~~~~~i~~a~s~~p~----g~~~~~~~-~~~~~~--~--~~~~~~Dp~v~-~d~dG~~Yl~~~~~~~~~~~~~ 147 (287)
T cd08999 78 YSARDKGSGGQCIGVATADSPL----GPFTDHGK-PPLCCP--E--GEGGAIDPSFF-TDTDGKRYLVWKSDGNSIGKPT 147 (287)
T ss_pred EEeecCCCCCEEEEEEECCCCC----CCCccCCc-ceEecC--C--CCCCccCCCeE-ECCCCCEEEEEeccCCCCCCCc
Confidence 9998642 45667788887753 36887643 333322 1 23567999964 5568999999987543211
Q ss_pred EEEEE-EeCCCCCcEEcccccccC---CCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCee--eEEEEE
Q 014220 211 LAILY-RSKDFVHWIKAKHPLHSV---KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHE--YYTVGT 284 (428)
Q Consensus 211 ~i~ly-~S~Dl~~W~~~~~~l~~~---~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~--~Y~vG~ 284 (428)
.+.+. .|+|+.+|......+... ....++|||.+|+.+ | +++|++|....... .|.+|-
T Consensus 148 ~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~--g-------------~yyl~~S~~~~~~~~~~y~i~~ 212 (287)
T cd08999 148 PIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRG--G-------------YYYLFYSAGGCCSGASTYAVGV 212 (287)
T ss_pred eEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEEC--C-------------EEEEEEEcCCccCCCCCEEEEE
Confidence 23333 378988886433223211 134589999999997 5 88888887532221 455553
No 16
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.75 E-value=7.8e-17 Score=157.28 Aligned_cols=195 Identities=15% Similarity=0.211 Sum_probs=139.2
Q ss_pred CCcceEEECCEEEEEEeeCCCCCC---CCCcEEEEEEeCCCCCCccCCCCCCCCC--CccCCCeEeeeEEEcCCCceEEE
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAV---WGNIVWAHSTSKDLINWIPHDPAIYPSQ--QSDINGCWSGSATILPGEKPAIF 134 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~---~g~~~Wgha~S~Dlv~W~~~~~al~P~~--~~D~~gv~SGsav~~~dg~~~l~ 134 (428)
|| .++.++|+|+||.......+. .....|..++|+||+||+..+.+|.+.. .++..++|.++++. .+|+++||
T Consensus 2 DP-~~~~~~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~-~~g~yy~y 79 (274)
T cd08990 2 DP-AAHVFNGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPDLVNWTDHGVILSVTDFPAWAKGQAWAPDVVE-KNGKYYLY 79 (274)
T ss_pred CC-CcEEECCEEEEEeCCCCCCCCCCccccceEEEEECCCCCCcEECcccccCCCCCccccCCcCcCeEEE-ECCEEEEE
Confidence 89 477889999999987654432 2345699999999999999999887543 36778999999986 58999999
Q ss_pred EcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEE
Q 014220 135 YTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAIL 214 (428)
Q Consensus 135 YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~l 214 (428)
|++......+.+++|+|++.. ..|++....|++... + ......||.| |.+++|++||++++. .+....
T Consensus 80 y~~~~~~~~~~igva~s~~p~----Gpw~~~~~~~~~~~~--~--~~~~~iDp~v-f~d~dG~~yl~~~~~---~~~~~~ 147 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPA----GPFKDAGGPILITTP--S--GGWYSIDPAV-FIDDDGQAYLYWGGG---LGLRVA 147 (274)
T ss_pred EEeecCCCceEEEEEEeCCCC----CCCCCCCCccccccC--C--CCCCccCCcE-EECCCCCEEEEECCc---CCEEEE
Confidence 998754345667899997753 468876544555322 1 2346789996 455789999999875 233334
Q ss_pred EEeCCCCCcEEccccccc-----CCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCeeeEEEE
Q 014220 215 YRSKDFVHWIKAKHPLHS-----VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVG 283 (428)
Q Consensus 215 y~S~Dl~~W~~~~~~l~~-----~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~Y~vG 283 (428)
-.|+|+.+|+.....+.. .......|+|.+++.+ | +++|++|........|.+.
T Consensus 148 ~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~--G-------------~YYl~yS~~~~~~~~~a~s 206 (274)
T cd08990 148 KLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRN--G-------------TYYLSYSTGDPEEIAYATS 206 (274)
T ss_pred EeCccccccCCCcEEEEeccccCCCCCCcccceeEEEEC--C-------------EEEEEEECCCCcEEEEEEc
Confidence 467899999754333321 1234578999999997 5 8888888765444555554
No 17
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.70 E-value=1.5e-15 Score=146.59 Aligned_cols=192 Identities=21% Similarity=0.237 Sum_probs=130.6
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCC----CCCCccCCCeEeeeEEEcCCCceEEEE
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY----PSQQSDINGCWSGSATILPGEKPAIFY 135 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~----P~~~~D~~gv~SGsav~~~dg~~~l~Y 135 (428)
||. ++.++|+|+||+..... ....+..++|+||++|+..+.+|. +....+..++|.++++. .+|+++|+|
T Consensus 2 DP~-v~~~~~~yyl~~t~~~~----~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~y 75 (271)
T cd08978 2 DPY-ILRYNGKYYLYGSTDDA----AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIY-YEGKYYLYY 75 (271)
T ss_pred CCc-EEEECCEEEEEEecCCc----CCCcEEEEECCccCCcEECCcccccccccCCcccCCceeCCeEEE-ECCEEEEEE
Confidence 895 78899999999987643 234689999999999999998875 34445568899999987 479999999
Q ss_pred cccCC-CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC--CccEE
Q 014220 136 TGIDP-HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--RKGLA 212 (428)
Q Consensus 136 Tg~~~-~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~--~~G~i 212 (428)
++... ...+.+++|+|+|. ..|.+... .... . ......+||.|+ .+++|++||++++... +.+.|
T Consensus 76 ~~~~~~~~~~~i~~a~s~d~-----~g~~~~~~---~~~~--~-~~~~~~iDp~vf-~d~dg~~yl~~~~~~~~~~~~~i 143 (271)
T cd08978 76 SVSDFDYNGSGIGVATSEDP-----TGPFEDKV---IRPP--T-SNNGNSIDPTVF-KDDDGKYYLYYGSGDPGAGFGGI 143 (271)
T ss_pred EcccCCCCcccEEEEECCCC-----CCCccccc---cCcC--c-cCCCCccCcceE-EcCCCCEEEEEecccCCCCCCcE
Confidence 99753 23567888988775 34544321 1111 1 123467899965 5567999999987642 24568
Q ss_pred EEEEeCCCCCcEEccccc--ccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCeeeEEEEE
Q 014220 213 ILYRSKDFVHWIKAKHPL--HSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVGT 284 (428)
Q Consensus 213 ~ly~S~Dl~~W~~~~~~l--~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~Y~vG~ 284 (428)
.++++++...|......+ .......+.|+|.+|+.+ | +|+|++|........|.++-
T Consensus 144 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~--g-------------~yyl~ys~~~~~~~~y~~~~ 202 (271)
T cd08978 144 YISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKN--G-------------YYYLTYSANGTGDYGYNIGY 202 (271)
T ss_pred EEEEECcccccccCCceeeeeeccCCCceEccEEEEEC--C-------------EEEEEEEeCCCCCCCceEEE
Confidence 888887654443211111 112234589999999987 5 88888887543223455543
No 18
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.67 E-value=5.3e-15 Score=145.59 Aligned_cols=180 Identities=18% Similarity=0.189 Sum_probs=126.1
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCC-CccCCCeEeeeEEEcCCCceEEEEccc
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ-QSDINGCWSGSATILPGEKPAIFYTGI 138 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~-~~D~~gv~SGsav~~~dg~~~l~YTg~ 138 (428)
||. +++++|+|+||+..... ...+..++|+||++|+.++.++.+.. .++..++|.++++. .+|+++|+||+.
T Consensus 2 DP~-v~~~~g~yyl~~t~~~~-----~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~ys~~ 74 (294)
T cd08991 2 DPF-VLRYNGKYYAYGTGGAD-----GRGFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWAPEVYY-YNGKFYMYYSAN 74 (294)
T ss_pred CCe-EEEECCEEEEEEeCCCC-----CCeeEEEECCCCCCceECCccccCCCCCccCCcEEccEEEE-ECCEEEEEEEec
Confidence 895 78899999999876543 23588999999999999998887654 37778999999887 489999999997
Q ss_pred CCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCC---ccEEEE
Q 014220 139 DPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR---KGLAIL 214 (428)
Q Consensus 139 ~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~---~G~i~l 214 (428)
... ..+.+++|+|+|.. ..|++... +.+.. ....+||.|+ .+++|+|||+++..... .+....
T Consensus 75 ~~~~~~~~i~~a~s~~p~----gp~~~~~~-~~~~~-------~~~~iD~~vf-~d~dG~~yl~~~~~~~~~~~~~i~~~ 141 (294)
T cd08991 75 DRDEKTEHIGVAVSDSPL----GPFRDIKK-PPIDF-------EPKSIDAHPF-IDDDGKPYLYYSRNNYGNRVSDIYGT 141 (294)
T ss_pred cCCCCcceEEEEEeCCCC----CCCCcCCC-CcccC-------CCcccCCceE-ECCCCCEEEEEEecCCCCcccceEEE
Confidence 543 45778899998753 35776432 22221 1245799965 55679999999865422 234444
Q ss_pred EEeCCCCCcEEccc----ccccC--------------CCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC
Q 014220 215 YRSKDFVHWIKAKH----PLHSV--------------KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (428)
Q Consensus 215 y~S~Dl~~W~~~~~----~l~~~--------------~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~ 274 (428)
--|.|+.+|..... ++..+ ....+.|+|.+++.+ | +|+|++|...
T Consensus 142 ~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~--g-------------~yyl~ys~~~ 204 (294)
T cd08991 142 ELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHN--G-------------RYYLTYSANH 204 (294)
T ss_pred EEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEEC--C-------------EEEEEEECCC
Confidence 56788877752111 11110 123479999999997 5 7888888643
No 19
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.65 E-value=5.6e-15 Score=147.80 Aligned_cols=179 Identities=18% Similarity=0.275 Sum_probs=127.5
Q ss_pred CccccccCCCCC-ccCCcceEEECCEEEEEEeeCCC-----------CC--CCCCcEEEEEEeCCCCCCccCCCCCCCC-
Q 014220 46 RTGYHFQPPKNW-INDPNGVMIYKGIYHLFYQYNPK-----------GA--VWGNIVWAHSTSKDLINWIPHDPAIYPS- 110 (428)
Q Consensus 46 Rp~~H~~p~~gw-~nDPng~~~~~G~YHlFYq~~p~-----------~~--~~g~~~Wgha~S~Dlv~W~~~~~al~P~- 110 (428)
.|..=+.+..+. ..||..+++.+|+|||||+.... .+ .|....++||+|+||++|++.+++|.+.
T Consensus 24 ~p~~~~~~e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~ 103 (349)
T cd08992 24 YPKGGLGYEEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGE 103 (349)
T ss_pred CcccccccccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCC
Confidence 444444444443 46998799999999999986532 11 2456788999999999999999888754
Q ss_pred -CCccCCCeEeeeEEEcCCCceEEEEcccCCC----CcceEEEEEEcCCCCCccceeEecCCCceecCCCC---------
Q 014220 111 -QQSDINGCWSGSATILPGEKPAIFYTGIDPH----NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAM--------- 176 (428)
Q Consensus 111 -~~~D~~gv~SGsav~~~dg~~~l~YTg~~~~----~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~--------- 176 (428)
..||+.++|.++|+. .+|+++|||++.... ..+.+++|+|.++. ..|++. .+||+.+...
T Consensus 104 ~g~Wd~~~vwaP~Vi~-~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~----GpWtr~-d~Pil~p~~dg~w~~d~~~ 177 (349)
T cd08992 104 KGAYDDRSVFTPEVLE-HEGTYYLVYQVVKSPYLNRSFESIAMAVADSPY----GPWTKS-DEPILSPSNDGIWKGDEDN 177 (349)
T ss_pred CCCccccceECcEEEE-ECCEEEEEEEecccccCCCCcceEEEEEECCcc----cccccC-CCcEecCCcCCceeeccCc
Confidence 358999999999986 599999999976421 23567999998763 359886 6799865310
Q ss_pred -------CCCCCCCccCCeEEEECCCCeEEEEEeeecC--------CccEEEEEEeCCCC-CcEEcc-ccccc
Q 014220 177 -------NQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--------RKGLAILYRSKDFV-HWIKAK-HPLHS 232 (428)
Q Consensus 177 -------~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~--------~~G~i~ly~S~Dl~-~W~~~~-~~l~~ 232 (428)
..++...+.||.|+.. +|+|||++.+... ..-+|.++.|++.. -|+... +|+..
T Consensus 178 ~~~~~~~g~wD~~~v~~P~v~~~--~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~nPi~~ 248 (349)
T cd08992 178 RFLVKKKGSFDSHKVHDPCLFPF--NGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKSPYNPITN 248 (349)
T ss_pred eeEeccCCCcccCceECCEEEEE--CCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeCCCCcccC
Confidence 1144556789997644 7899999966431 12368899999876 477543 35543
No 20
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.61 E-value=5.2e-14 Score=138.37 Aligned_cols=179 Identities=21% Similarity=0.224 Sum_probs=121.7
Q ss_pred ccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCC-------ccCCCeEeeeEEEcCCCc
Q 014220 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-------SDINGCWSGSATILPGEK 130 (428)
Q Consensus 58 ~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-------~D~~gv~SGsav~~~dg~ 130 (428)
+.||. +++++|+|+||+... ++++++|+||+||+..+.++.+... .+..++|.++++. .+|+
T Consensus 1 ~~DP~-v~~~~~~yyl~~t~~---------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~-~~g~ 69 (288)
T cd08998 1 VHDPS-IIKEGDTYYLFSTGN---------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIY-LNGK 69 (288)
T ss_pred CCCCe-EEEECCEEEEEEcCC---------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccCCeEEE-ECCE
Confidence 46995 789999999999854 5899999999999999988765432 3457899999886 4999
Q ss_pred eEEEEcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCc
Q 014220 131 PAIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRK 209 (428)
Q Consensus 131 ~~l~YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~ 209 (428)
++|||++.... ....+++|+|++.. ...|++. +||+... ++......+||.|+ .+++|++||++++...
T Consensus 70 yyl~ys~~~~~~~~~~i~va~s~~~~---~gpw~~~--~~v~~~~--~~~~~~~~iDp~vf-~d~dG~~Yl~~~~~~~-- 139 (288)
T cd08998 70 YYLYYSVSTFGSNRSAIGLATSDTLP---DGPWTDH--GIVIESG--PGRDDPNAIDPNVF-YDEDGKLWLSFGSFWG-- 139 (288)
T ss_pred EEEEEEEEeCCCCceEEEEEEeCCCC---CCCCEEc--ceeeecC--CCCCCcccccCCEE-EcCCCCEEEEeeeccC--
Confidence 99999987543 45667889988750 1479874 4887543 22123467899965 5468999999986431
Q ss_pred cEEEEEE-eCC---CCCcEEcccccccCC-CCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 210 GLAILYR-SKD---FVHWIKAKHPLHSVK-GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 210 G~i~ly~-S~D---l~~W~~~~~~l~~~~-~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
| +.+.+ +.| ...|......+.... .....|-|.+|+.+ | +++|++|..
T Consensus 140 ~-i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~--g-------------~YYl~~S~~ 192 (288)
T cd08998 140 G-IFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRG--G-------------YYYLFVSYG 192 (288)
T ss_pred C-EEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeC--C-------------EEEEEEEcc
Confidence 2 33332 222 223321111122111 23468999999987 5 788888754
No 21
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.60 E-value=5.7e-14 Score=138.68 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=118.6
Q ss_pred ccCCcceEEE--CCEEEEEEee-CCCC----CCCC-CcEEEEEEeCC-CCCCccCCCCCCCCCCccCCCeEeeeEEEcCC
Q 014220 58 INDPNGVMIY--KGIYHLFYQY-NPKG----AVWG-NIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGCWSGSATILPG 128 (428)
Q Consensus 58 ~nDPng~~~~--~G~YHlFYq~-~p~~----~~~g-~~~Wgha~S~D-lv~W~~~~~al~P~~~~D~~gv~SGsav~~~d 128 (428)
.-||. +++. +|+|||||.. .... ..|. ...+++|+|+| |++|++++.++.+...+....+|.+.++. .+
T Consensus 11 ~~DP~-i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~v~~-~~ 88 (294)
T cd08984 11 AADPT-IIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPEVVW-HG 88 (294)
T ss_pred CCCCE-EEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCceEEE-EC
Confidence 78995 7776 7899999952 1111 1233 35799999999 99999998776654455667799999987 48
Q ss_pred CceEEEEcccCC-----CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEe
Q 014220 129 EKPAIFYTGIDP-----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (428)
Q Consensus 129 g~~~l~YTg~~~-----~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~g 203 (428)
|+++|||++... .....+++|+|+| +.+|++.+ ++.... ....||.|+ ...+|+|+|++.
T Consensus 89 G~y~myys~~~~~~~~~~~~~~i~~a~S~D-----l~~w~~~~--~~~~~~-------~~~iD~~vf-~~~dg~~yl~y~ 153 (294)
T cd08984 89 GVYHMYVTYIPGVPPDWGGPRRIVHYTSPN-----LWDWTFVG--RVDLDS-------DRVIDACVF-KLPDGRWRMWYK 153 (294)
T ss_pred CEEEEEEEecCCCCcccCCCcEEEEEECCC-----cCcceECC--ccccCC-------CCcEEeEEE-EeCCCEEEEEEE
Confidence 999999997532 1345677888877 36898753 332111 235799965 546799999996
Q ss_pred eecCCccEEEEEEeCCCCCcEEcccccccCCCCCeeecCceEEec
Q 014220 204 SKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVS 248 (428)
Q Consensus 204 a~~~~~G~i~ly~S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~ 248 (428)
.... ...+.+..|+|+.+|+..+. +.. ....|.|.+|+.+
T Consensus 154 ~~~~-~~~~~~a~s~D~~~w~~~~~-~i~---~~~~EgP~v~k~~ 193 (294)
T cd08984 154 DERR-GSTTYAADSEDLYHWTVEGP-VLG---DRPHEGPNVFRWK 193 (294)
T ss_pred CCCC-CeEEEEEECCCCCEEEeCCc-ccc---CCCCCCCCeeEEC
Confidence 4322 23467889999999997543 322 1235999999986
No 22
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.56 E-value=1.1e-12 Score=127.81 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=132.6
Q ss_pred cCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCC----CccCCCeEeeeEEEcC-CCceEE
Q 014220 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ----QSDINGCWSGSATILP-GEKPAI 133 (428)
Q Consensus 59 nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~----~~D~~gv~SGsav~~~-dg~~~l 133 (428)
-|| ++++++|+|++|-.....+.. ....|...+|+||+||+.++.+|.+.. .+...++|.++++..+ +|+++|
T Consensus 4 h~~-~i~~~~~~yY~ygs~~~~~~~-~~~gi~~~sS~DLvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y~m 81 (265)
T cd08985 4 HGG-GILKVGGTYYWYGENKGGGDT-AFGGVSCYSSTDLVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKYVM 81 (265)
T ss_pred ccC-ceEEECCEEEEEEEecCCCCc-ccccEEEEECCCCccceECceeccccccccccccCcEEECCeEEEeCCCCEEEE
Confidence 356 688899999999877643211 135688999999999999999997764 3445689999998643 589999
Q ss_pred EEcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEE
Q 014220 134 FYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLA 212 (428)
Q Consensus 134 ~YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i 212 (428)
+|++...+ ....+++|+|++.. ..|+... .+. + . ....|||.|+ .+++|++||++++..+. .+
T Consensus 82 ~~~~~~~~~~~~~igvA~Sd~p~----Gpf~~~~-~~~---~--~---~~~~~Dp~vf-~DdDG~~Yl~~~~~~~~--~i 145 (265)
T cd08985 82 WMHIDSSDYSDARVGVATSDTPT----GPYTYLG-SFR---P--L---GYQSRDFGLF-VDDDGTAYLLYSDRDNS--DL 145 (265)
T ss_pred EEEeCCCCCcceeEEEEEeCCCC----CCCEECC-ccC---C--C---CCCccCCceE-EcCCCCEEEEEecCCCC--ce
Confidence 99986532 45578899987653 3466532 121 1 1 2356999965 55789999999876422 34
Q ss_pred EEEE-eCCCCCcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC---CCeeeEEEEEeeCC
Q 014220 213 ILYR-SKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD---TKHEYYTVGTYSTA 288 (428)
Q Consensus 213 ~ly~-S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~---~~~~~Y~vG~~d~~ 288 (428)
.+.+ ++|+.++... +.. .......|||.+|+.+ | +++|++|... .....|++.+ + -
T Consensus 146 ~i~~L~~d~~~~~~~--~~~-~~~~~~~EaP~i~K~~--g-------------~YYL~~S~~t~~~~~~~~y~~s~-s-~ 205 (265)
T cd08985 146 YIYRLTDDYLSVTGE--VTT-VFVGAGREAPAIFKRN--G-------------KYYLLTSGLTGWNPNDARYATAT-S-I 205 (265)
T ss_pred EEEEeCCCcccccce--EEE-ccCCCccccceEEEEC--C-------------EEEEEEccCCCccCCceEEEEec-C-C
Confidence 4554 3677777532 221 1234579999999998 5 8888888642 2345676665 2 2
Q ss_pred CCcccC
Q 014220 289 KDRYVP 294 (428)
Q Consensus 289 ~~~f~p 294 (428)
.|.|+.
T Consensus 206 ~GP~~~ 211 (265)
T cd08985 206 LGPWTD 211 (265)
T ss_pred CCCccc
Confidence 345543
No 23
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.44 E-value=6.2e-12 Score=123.68 Aligned_cols=178 Identities=18% Similarity=0.165 Sum_probs=117.6
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCC--c----cCCCeEeeeEEEcCCC
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ--S----DINGCWSGSATILPGE 129 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~--~----D~~gv~SGsav~~~dg 129 (428)
+..-||. +++.+|+|+||...... ...+..++|+||+||+.++.+|.+... + ...++|.+.++. .+|
T Consensus 6 ~~~~DP~-i~~~~~~yy~~~t~~~~-----~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~g 78 (288)
T cd09000 6 GFYPDPS-ICRVGDDYYLVTSSFEY-----FPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPTIRY-HDG 78 (288)
T ss_pred CCCCCCC-EEEECCEEEEEECCccc-----CCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcceEEE-ECC
Confidence 4677996 78899999998532211 235889999999999999988754321 1 346799999987 499
Q ss_pred ceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC--
Q 014220 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN-- 207 (428)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~-- 207 (428)
+++|+|++........+.+|+|++.. ..|+. |++.. ...+||.|+ .+++|++||+++....
T Consensus 79 ~yy~yy~~~~~~~~~~~~v~~s~~p~----gpw~~----~~~~~--------~~~iDp~vf-~d~dG~~Y~~~~~~~~~~ 141 (288)
T cd09000 79 TFYLITTNVDGMKDGGNFIVTADDPA----GPWSD----PVWLD--------SGGIDPSLF-FDDDGKVYLVGNGWDERR 141 (288)
T ss_pred EEEEEEEecCCCCCCceEEEEeCCCC----CCCcC----CEecC--------CCccCCcee-EcCCCCEEEEecccCCcc
Confidence 99999998753333456788887653 24542 33211 145799965 4578999999886432
Q ss_pred ---CccEEEEEEeCCCCCcEEcccc--cccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 208 ---RKGLAILYRSKDFVHWIKAKHP--LHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 208 ---~~G~i~ly~S~Dl~~W~~~~~~--l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
+.+.|.+.+. |...|+..+++ +.........|+|.+|+.+ | +++|++|..
T Consensus 142 ~~~~~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~--g-------------~YYl~ys~~ 196 (288)
T cd09000 142 GYNGHGGIWLQEI-DLETGKLLGEPKVIWNGTGGRWPEGPHLYKRD--G-------------WYYLLIAEG 196 (288)
T ss_pred ccCCCCcEEEEEE-ccccCCCCCCcEEEEeCCCCCCcccCeEEEEC--C-------------EEEEEEecC
Confidence 1234555543 33345443332 2222233578999999987 5 788888754
No 24
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.41 E-value=1.6e-11 Score=122.33 Aligned_cols=187 Identities=13% Similarity=0.235 Sum_probs=123.8
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCC---------CCCCcEEEEEEeCCCCCCccCCCCCCCC--CCccCCCeEeeeEE
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGA---------VWGNIVWAHSTSKDLINWIPHDPAIYPS--QQSDINGCWSGSAT 124 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~---------~~g~~~Wgha~S~Dlv~W~~~~~al~P~--~~~D~~gv~SGsav 124 (428)
.+.-||. ++.++|+|+||........ .+....+-..+|+||++|+.++.++.|. ..|. .++|.+.++
T Consensus 7 ~~~aDP~-~~~~~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w~-~~~WAP~v~ 84 (311)
T cd09003 7 RYGADPT-AVVYNGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKWA-GNSWAPSIA 84 (311)
T ss_pred CccCCCC-eEEECCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCcc-cccCCCceE
Confidence 4668996 6789999999997653221 1223468889999999999999988742 3443 478999988
Q ss_pred EcCC----CceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCC-CCccCCeEEEECCCCeEE
Q 014220 125 ILPG----EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINT-SSFRDPTTAWLGPDKRWR 199 (428)
Q Consensus 125 ~~~d----g~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~-~~~RDP~V~~~~~~g~y~ 199 (428)
.. + |+++|+|+.. ...+++|+|++.. -.|+...++|++.... ++... ....||.++ .+++|+.|
T Consensus 85 ~~-~~~~~gkyylyy~~~----~~~igva~SdsP~----GP~~~~~g~~l~~~~~-~~~~~~~~~iDp~~f-~DdDG~~Y 153 (311)
T cd09003 85 VK-KINGKGKFYLYFANG----GGGIGVLTADSPV----GPWTDPLGKPLITGST-PGCAGVVWLFDPAVF-VDDDGQGY 153 (311)
T ss_pred Ee-ccCCCCEEEEEEecC----CCeEEEEEcCCCC----CCcccCCCCeeecCCC-CCccCCccccCCCeE-ECCCCCEE
Confidence 64 6 9999999853 2347899987764 4688754567764320 11111 123699964 55789999
Q ss_pred EEEeeecC-----CccEEEEEE-eCCCCCcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 200 VIIGSKIN-----RKGLAILYR-SKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 200 Mv~ga~~~-----~~G~i~ly~-S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
|++++... ..+.+.+.+ ++|+..-. +++..- .....+|.|.+++.+ | +++|++|..
T Consensus 154 l~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~--g~~~~i-~~~~~~Egp~~~K~~--G-------------~YYL~ys~~ 215 (311)
T cd09003 154 LYFGGGVPGGRWANPNTARVIKLGDDMISVD--GSAVTI-DAPYFFEASGLHKIN--G-------------TYYYSYCTN 215 (311)
T ss_pred EEECCccCCCccccCCCEEEEEeCCCceecc--CCceEc-cCCCceEeeeEEEEC--C-------------EEEEEEeCC
Confidence 99985431 123455554 45665432 222111 113579999999987 5 788888764
No 25
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.41 E-value=4.8e-11 Score=116.92 Aligned_cols=185 Identities=14% Similarity=0.083 Sum_probs=122.3
Q ss_pred CCCccCCcceEEE--CCEEEEEEeeCCCCCCC-CCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcC-CCc
Q 014220 55 KNWINDPNGVMIY--KGIYHLFYQYNPKGAVW-GNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILP-GEK 130 (428)
Q Consensus 55 ~gw~nDPng~~~~--~G~YHlFYq~~p~~~~~-g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~-dg~ 130 (428)
.+-+.||. +++. +|+|||++...-....+ +...+.+++|+||+||+..+.++.... ...++|.+.++.++ +|+
T Consensus 15 ~~~~rDP~-I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--~~~~~WAPev~~d~~~g~ 91 (276)
T cd08983 15 TKGLRDPF-ILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPP--NAGNTWAPEAFWDAERGQ 91 (276)
T ss_pred CCCccCCe-EEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCC--CcCcEeCccceEcCCCCe
Confidence 35578996 6666 89999999865322111 346799999999999999887642211 24678999988754 689
Q ss_pred eEEEEcccCCC---CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC
Q 014220 131 PAIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN 207 (428)
Q Consensus 131 ~~l~YTg~~~~---~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~ 207 (428)
++|+|++.... ....+.+.++.. . ++.+|+. ..+++.+. ....|+.++ .+ +|+|||++....+
T Consensus 92 y~~~~s~~~~~~~~~~~~~~i~~~tt-~--Df~tft~--p~~~~~~~-------~~~ID~~v~-~~-~g~~Yl~~k~~~~ 157 (276)
T cd08983 92 YVVYWSSRLYDNTGGFYNYRLYATTT-S--DFVTFTE--PKVWIDLG-------ANVIDTTVV-KV-GGTYYRFYKNEGS 157 (276)
T ss_pred EEEEEecccCCCCCCCccEEEEEEec-C--cccccCC--CeEeecCC-------CCeEeeEEE-Ee-CCEEEEEEecCCC
Confidence 99999987532 122233333321 1 1468875 24666422 356899864 43 4899999975432
Q ss_pred CccEEEEEEeCCCC-CcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 208 RKGLAILYRSKDFV-HWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 208 ~~G~i~ly~S~Dl~-~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
..|.+.+|++|. .|+...... .......|-|.+|+.+.. .+|+|+++..
T Consensus 158 --~~i~~~~s~~l~g~~~~~~~~~--~~~~~~~EgP~v~k~~~~-------------~~y~L~~d~y 207 (276)
T cd08983 158 --KDIELARSKSLTGPWTIVGTGD--AGWGGAVEGPTVFKLNNG-------------GGWYLYGDNY 207 (276)
T ss_pred --CcEEEEEeCCCCCCceEecccc--cCCCCceeCCeEEEECCC-------------CEEEEEEEEC
Confidence 457888999987 677654321 122357999999999832 3888887653
No 26
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=99.41 E-value=3.6e-12 Score=126.85 Aligned_cols=196 Identities=18% Similarity=0.275 Sum_probs=125.5
Q ss_pred ceEEECCE--EEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCC-CCCCCCCCccCCCeEeeeEEEcCCCceEEEEcccC
Q 014220 63 GVMIYKGI--YHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHD-PAIYPSQQSDINGCWSGSATILPGEKPAIFYTGID 139 (428)
Q Consensus 63 g~~~~~G~--YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~-~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg~~ 139 (428)
|++.++|. +||.|...-.. ....+.|.|.|+|.+||+..+ ++|.|+..++..||....++.. +|+++|+||+.+
T Consensus 36 gai~~~~~~R~~l~yr~~~~~--~~~~~iglA~S~DGi~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~yymtYta~~ 112 (312)
T PF04041_consen 36 GAIVFDGGLRVYLLYRAYGSD--IGSSRIGLARSDDGIHFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTYYMTYTAYS 112 (312)
T ss_dssp EEEEETTE--EEEEEEEEESS--SSEEEEEEEEESSSSS-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred cEEEECCeeEEEEEEEeECCC--CceeEEEEEEccCCcCceECCCCEEccCCCCcccCccceeEEEE-CCEEEEEEEEec
Confidence 67767666 89998765322 223489999999999999874 7899999999999999999875 889999999987
Q ss_pred CCCcceEEEEEEcCCCCCccceeEecCCCceecCCCC-CCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEEEEeC
Q 014220 140 PHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAM-NQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSK 218 (428)
Q Consensus 140 ~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~-~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~ 218 (428)
. ....+++|+|+| +.+|+|.. +++..... .......-+|-.+|-...+|+|+|+.. .+.|.+.+|+
T Consensus 113 ~-~~~~~~la~s~D-----~~~~~r~g--~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r-----~~~i~la~S~ 179 (312)
T PF04041_consen 113 G-KGPRIGLATSKD-----FKHWERHG--KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR-----DPSIWLAYSP 179 (312)
T ss_dssp S-SSEEEEEEEESS-----SSSEEEEE--CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE-----SSSBEEEEES
T ss_pred C-CCcccceEEccc-----hHhhEEec--cccCcccccccccccccCceEEEEEEECCEEEEEEC-----CCCEEEEecC
Confidence 4 346678999988 48999974 33322100 001112235654322224799999998 3468999999
Q ss_pred CCCCcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEee-CCCCeeeEEEEE
Q 014220 219 DFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSL-DDTKHEYYTVGT 284 (428)
Q Consensus 219 Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~-~~~~~~~Y~vG~ 284 (428)
|+++|+....++... ....||+ .+++. |+.-+. + +.-|++++.. .......|.+|-
T Consensus 180 Dl~~W~~~~~~~~~~-~~~~~d~---~kiG~-g~pPi~----t-~~GwL~iyHG~~~~~~~~Y~~g~ 236 (312)
T PF04041_consen 180 DLIHWGNHREPLLSP-RPGWWDS---SKIGA-GPPPIK----T-DEGWLLIYHGNVTDEGRVYRLGA 236 (312)
T ss_dssp SSSSEEEEBETSB---STTSSCS---SEEEE--S-EEE----E-TTEEEEEEEEEESSTTTEEEEEE
T ss_pred CcccccccccccccC-CCCcChh---hcccC-CCCceE----e-cCCEEEEEeccccCCCCEEEEEE
Confidence 999998765544433 2346776 34442 211111 1 1248877663 123345677877
No 27
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.38 E-value=2.4e-11 Score=118.54 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=126.0
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCcc--CCCe-EeeeEEEcCCCceE
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSD--INGC-WSGSATILPGEKPA 132 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D--~~gv-~SGsav~~~dg~~~ 132 (428)
+..-||. ++..+|+|+||+...... ..+..++|+||+||+..+.+|.+....+ ..+. |.+.++. .+|+++
T Consensus 8 ~~~~DP~-i~~~~~~yY~~~t~~~~~-----~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~-~~g~yy 80 (286)
T PF04616_consen 8 GDYADPS-IVRFGDGYYLYGTTDPEG-----PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHY-INGKYY 80 (286)
T ss_dssp SSECSEE-EEEETTEEEEEEEEBTCE-----SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEE-ETTEEE
T ss_pred CCCCCCE-EEEECCEEEEEEEcCCCC-----CeEEEEECCCCcccccceeeecccccccccccccccCCeEEE-cCCeEE
Confidence 5678995 788999999999876543 3588999999999999987776654332 2333 9999876 599999
Q ss_pred EEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCC--cc
Q 014220 133 IFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR--KG 210 (428)
Q Consensus 133 l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~--~G 210 (428)
|||+.........+.+|+|++.. ..|+... .+.+. .....||.|+ .+++|++||+++..... .+
T Consensus 81 ~y~~~~~~~~~~~~~va~a~~~~----Gp~~~~~-~~~~~--------~~~~iD~~vf-~d~dG~~Yl~~~~~~~~~~~~ 146 (286)
T PF04616_consen 81 MYYSDSGGDAGSGIGVATADSPD----GPWTDPG-KIPIP--------GGNSIDPSVF-VDDDGKYYLYYGSWDNGDPGG 146 (286)
T ss_dssp EEEEEESTSTTEEEEEEEESSTT----S-EEEEE-EEEEE--------SSSSSSEEEE-EETTSEEEEEEEESTTTSSEE
T ss_pred EEEEccCCCCCcceeEEEeCCcc----ccccccc-ceeec--------cccccCceEE-EecCCCcEEeCcccCCCccce
Confidence 99993222345668899988763 4687642 12221 1345799965 44679999999986532 34
Q ss_pred EEEEEE-eCCCCCcEEcc-cccccC---CCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC
Q 014220 211 LAILYR-SKDFVHWIKAK-HPLHSV---KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (428)
Q Consensus 211 ~i~ly~-S~Dl~~W~~~~-~~l~~~---~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~ 274 (428)
.|.+.+ ++|...+.... ..+... ......|+|.+|+.+ | +++|++|...
T Consensus 147 ~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~--g-------------~yYl~~s~~~ 200 (286)
T PF04616_consen 147 GIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHG--G-------------KYYLFYSAGG 200 (286)
T ss_dssp EEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEET--T-------------EEEEEEEESG
T ss_pred eEEeecccCccccccCcccccccccccccCCccccceEEEEcC--C-------------CEEEEEeccC
Confidence 555555 46666666443 122222 245689999999997 5 7888888643
No 28
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.33 E-value=1.5e-10 Score=114.30 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=93.5
Q ss_pred CCccCCcceEEE--CCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCC-CccCCCeEeeeEEEcCCCceE
Q 014220 56 NWINDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ-QSDINGCWSGSATILPGEKPA 132 (428)
Q Consensus 56 gw~nDPng~~~~--~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~-~~D~~gv~SGsav~~~dg~~~ 132 (428)
.++-||. ++++ +|+||||..............+.+.+|+||+||+..+.++.+.. .+...++|.+.++. .+|+++
T Consensus 4 ~~~~DP~-v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~-~~G~yy 81 (291)
T cd08981 4 IRIRDPF-ILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHE-YKGRYY 81 (291)
T ss_pred ccccCCE-EEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeee-eCCEEE
Confidence 4578996 6777 99999999765332111124589999999999999998886543 34456899999875 599999
Q ss_pred EEEcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEee
Q 014220 133 IFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGS 204 (428)
Q Consensus 133 l~YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga 204 (428)
|||+..... ....+.+|+|++.. -.|+.....|+.... ....||.+ |.+++|++||+++.
T Consensus 82 ly~s~~~~~~~~~~~~va~s~~p~----GP~~~~~~~~~~~~~-------~~~iDp~~-f~DdDG~~Yl~~~~ 142 (291)
T cd08981 82 MFATFHNPGGERRGTAILVSDSPE----GPFVPHSDGPVTPED-------WMCLDGTL-YVDEDGKPWMVFCH 142 (291)
T ss_pred EEEEeccCCCceeeEEEEECCCCC----CCCEeCCCCccCCCC-------CceEcCce-EEcCCCCEEEEEEe
Confidence 999876432 22346788887653 357764333443211 23579985 55578999999874
No 29
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.32 E-value=1.8e-10 Score=113.03 Aligned_cols=180 Identities=19% Similarity=0.215 Sum_probs=115.1
Q ss_pred cCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCc-------cCCCeEeeeEEEcCCCce
Q 014220 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQS-------DINGCWSGSATILPGEKP 131 (428)
Q Consensus 59 nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~-------D~~gv~SGsav~~~dg~~ 131 (428)
.||. ++.++|+|+||.... .+..++|+||+||+..+.+|.+...+ ...++|.+.++. .+|++
T Consensus 1 ~DP~-vi~~~~~YY~~~T~~---------g~~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~G~y 69 (279)
T cd08988 1 HDPV-IIKEGDTWYVFGTGP---------GITILSSKDLVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQ-HNGKF 69 (279)
T ss_pred CCCE-EEEECCEEEEEEecC---------CEEEEECCCcCCccccCccccCCCccccccCCCCCCCEecceEEE-ECCEE
Confidence 3895 778899999987531 37789999999999999888644332 236899999876 58999
Q ss_pred EEEEcccCCC-CcceEEEEEEcCCCCCcc-ceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCc
Q 014220 132 AIFYTGIDPH-NRQVQNLAVPKNLSDPYL-REWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRK 209 (428)
Q Consensus 132 ~l~YTg~~~~-~~~~q~lA~S~D~~d~~l-~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~ 209 (428)
+|||++.... ....+++|+|++...+.- ..|++ ..+++... .. ......||.++ .+++|++||++++.. .
T Consensus 70 ylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~--~~~i~~~~--~~-~~~~~iDp~~f-~DdDG~~Yl~~g~~~--~ 141 (279)
T cd08988 70 YLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEK--GGVVISSD--AS-DNYNAIDPAII-FDQHGQPWLSFGSFW--G 141 (279)
T ss_pred EEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccc--cCceEecC--CC-CCCCccCCceE-EcCCCCEEEEecccC--C
Confidence 9999986432 346778999987654311 11442 24665432 11 12345799965 457899999998642 1
Q ss_pred cEEEEEE-eCCCCCcEEccc--ccccC-CCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 210 GLAILYR-SKDFVHWIKAKH--PLHSV-KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 210 G~i~ly~-S~Dl~~W~~~~~--~l~~~-~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
| |.+.+ +.|+..-...+. .+... ......|-|-+++.+ | +++|++|..
T Consensus 142 g-i~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~--g-------------~YYl~~S~g 193 (279)
T cd08988 142 G-IKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRG--D-------------YYYLFVSFG 193 (279)
T ss_pred C-EEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcC--C-------------eEEEEEEcC
Confidence 2 33333 344333211111 12111 123578999999987 5 777877753
No 30
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.28 E-value=7.7e-11 Score=114.09 Aligned_cols=137 Identities=21% Similarity=0.303 Sum_probs=97.5
Q ss_pred CCccCCcceEEEC-CEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCC-------CCCCccCCCeEeeeEEEcC
Q 014220 56 NWINDPNGVMIYK-GIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY-------PSQQSDINGCWSGSATILP 127 (428)
Q Consensus 56 gw~nDPng~~~~~-G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~-------P~~~~D~~gv~SGsav~~~ 127 (428)
+.+.||. +++.+ |+|||||...... ......+++|+|+|+++|+..+..+. +...++...+..+.++..+
T Consensus 64 ~~~~~p~-v~~~~dg~~~~~Yt~~~~~-~~~~~~i~~A~S~D~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~ 141 (276)
T cd08979 64 GGVWTPS-VVRDPDGTYRMFYTGYDRP-KGAVQRIGLATSKDLIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDE 141 (276)
T ss_pred CCeEcce-EEEcCCCeEEEEEecccCC-CCCcceEEEEECCCCCceEECCCCcceeeeecCCCCCcccccccccEEEEEC
Confidence 4577886 66777 9999999976532 23357899999999999998875542 2233445677889988764
Q ss_pred C-CceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeee
Q 014220 128 G-EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSK 205 (428)
Q Consensus 128 d-g~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~ 205 (428)
+ |+++|+|++........+.+|.|.|. .+|++....+... .+.....+++|.++ + .+|+|+|++++.
T Consensus 142 ~~g~y~m~~~~~~~~~~~~i~~a~S~D~-----~~W~~~~~~~~~~----~~~~~~~~e~P~~~-~-~~g~~~l~~~~~ 209 (276)
T cd08979 142 EGGGWRMYYGARDADERGAIGLATSPDL-----IHWTPVPPPPGPR----TGYDDGQLEVPQVV-K-IDGRWYLLYSGR 209 (276)
T ss_pred CCCEEEEEEEeEccCCCcEEEEEECCCC-----CcceECCCCCCCC----CcccCCcCccceEE-E-ECCEEEEEEEec
Confidence 3 89999999875445567888988874 7999864322121 22234678899965 4 368999999876
No 31
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.26 E-value=3.4e-10 Score=113.56 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=114.5
Q ss_pred ccCCcceEEECCEEEEEEeeCCCC-CCCCCcEEEEEEeCCCC-CCccCC-CCCCCCC------------------CccCC
Q 014220 58 INDPNGVMIYKGIYHLFYQYNPKG-AVWGNIVWAHSTSKDLI-NWIPHD-PAIYPSQ------------------QSDIN 116 (428)
Q Consensus 58 ~nDPng~~~~~G~YHlFYq~~p~~-~~~g~~~Wgha~S~Dlv-~W~~~~-~al~P~~------------------~~D~~ 116 (428)
+..|+ +++++|+|||||+..-.. ..-...+.|.|+|++.. .|++.+ ++|.|.. .||..
T Consensus 112 vwaP~-Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~Pil~p~~dg~w~~d~~~~~~~~~~g~wD~~ 190 (349)
T cd08992 112 VFTPE-VLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDEPILSPSNDGIWKGDEDNRFLVKKKGSFDSH 190 (349)
T ss_pred eECcE-EEEECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCCcEecCCcCCceeeccCceeEeccCCCcccC
Confidence 45674 778999999999854211 11123568888888876 698764 5566642 36777
Q ss_pred CeEeeeEEEcCCCceEEEEcccCC-------CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeE
Q 014220 117 GCWSGSATILPGEKPAIFYTGIDP-------HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTT 189 (428)
Q Consensus 117 gv~SGsav~~~dg~~~l~YTg~~~-------~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V 189 (428)
++...+++. .+|+++|||+|+.. ...+.+++|+|++.. -.|+|.+.|||+... + ..+
T Consensus 191 ~v~~P~v~~-~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~----GPf~r~~~nPi~~~~--------~--~~~- 254 (349)
T cd08992 191 KVHDPCLFP-FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPE----GPYVKSPYNPITNSG--------H--ETC- 254 (349)
T ss_pred ceECCEEEE-ECCEEEEEEEccccCcccccCCCCceEEEEEECCCC----CCCEeCCCCcccCCC--------C--ceE-
Confidence 787778765 59999999999752 134678999998875 458998889998533 1 236
Q ss_pred EEECCCCeEEEEEeeecCCccEEEEEEeCCCCCcEEcccccccCCCCCeeecCceEEec
Q 014220 190 AWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVS 248 (428)
Q Consensus 190 ~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~ 248 (428)
||.. .+.+-.++.....+.+. +..|+|.++|+-...+-..+...+..+|||-++-+
T Consensus 255 ~~~~-~~~~~~~~~~d~~~~~~--~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (349)
T cd08992 255 VWQY-KGGIAAMLTTDGPEKNT--IQFAPDGINFEIMAHIKGAPEAIGPYRRPDADEDP 310 (349)
T ss_pred EEec-CCceEEEEeccCCCCce--EEeCCCCccEEEeeeccCCCccccCccCcccccCC
Confidence 5884 45673444444334453 77899999999765322233345567788766654
No 32
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.21 E-value=7.6e-10 Score=108.03 Aligned_cols=179 Identities=17% Similarity=0.094 Sum_probs=111.3
Q ss_pred CccCCcceEEE-CCEEEEEEeeCCCCC----C-CCCcEEEEEEeCCCCCCccCCCCCCCCCC------------ccCCCe
Q 014220 57 WINDPNGVMIY-KGIYHLFYQYNPKGA----V-WGNIVWAHSTSKDLINWIPHDPAIYPSQQ------------SDINGC 118 (428)
Q Consensus 57 w~nDPng~~~~-~G~YHlFYq~~p~~~----~-~g~~~Wgha~S~Dlv~W~~~~~al~P~~~------------~D~~gv 118 (428)
||-||. ++.. +|+|+|+......+. . ........++|+||+||+..+.++..... +...++
T Consensus 1 ~~rDP~-v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 79 (269)
T cd08986 1 WIRDTY-VTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAV 79 (269)
T ss_pred CCcCCe-EEecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCc
Confidence 688996 5555 689999987543221 0 11235778999999999999887754321 234689
Q ss_pred EeeeEEEcCCCceEEEEcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCe
Q 014220 119 WSGSATILPGEKPAIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKR 197 (428)
Q Consensus 119 ~SGsav~~~dg~~~l~YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~ 197 (428)
|.+.+.. .+|+++|+|+..... ....+.+|++++.. -.|+..... .+ ...-.||.+ |.+++|+
T Consensus 80 WAP~v~~-~~g~yyl~~s~~~~~~~~~~i~va~a~~p~----Gp~~~~~~~----~~------~~~~iD~~~-f~D~DG~ 143 (269)
T cd08986 80 WAPELHY-IKGRWYLVACMNNPGYGGSSILLSTSGKIE----GPYKHITGN----KP------LFPGIDPSL-FEDDDGK 143 (269)
T ss_pred CCceEEE-ECCEEEEEEEccCCCCCceEEEEEeCCCCC----CCcEeccCC----CC------CCCccCCce-EEcCCCC
Confidence 9999876 589999999976432 23456677766543 346653221 01 012469985 5567899
Q ss_pred EEEEEeeecCCccEEEEEEeCCCCCcEEcccccccC----CCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 198 WRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSV----KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 198 y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~~l~~~----~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
+||+++... + .--+.|+....-....+... ......|-|.+++.+ | +++|++|..
T Consensus 144 ~Yl~~~~~~-----i-~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~--G-------------~YYL~yS~~ 202 (269)
T cd08986 144 VYLVWHNTL-----I-ARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYG--G-------------KYYLFGTAW 202 (269)
T ss_pred EEEEeeCCc-----e-EeccCccccccCCcEEEecccccccCCccccccEEEEEC--C-------------EEEEEEeec
Confidence 999997531 1 12255655432111111111 112357999999976 4 888888864
No 33
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=99.20 E-value=1.5e-09 Score=105.89 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=111.8
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCc------cCCCeEeeeEEEcCCC
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQS------DINGCWSGSATILPGE 129 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~------D~~gv~SGsav~~~dg 129 (428)
+..-||. +++++|+|+||+..... ...+...+|+||+||+..+.++...... ...++|.+.++. .+|
T Consensus 6 ~~~~DP~-ii~~~~~yY~~~t~~~~-----~~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~G 78 (269)
T cd08989 6 GDNPDPS-IIRAGDDYYMASSTFEW-----FPGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLSY-YDG 78 (269)
T ss_pred CCCCCCc-EEEECCeEEEEECcccc-----CCCcEEEECCccCCCEEccccccCccccccccCCCCCcEEcceEEE-ECC
Confidence 5667995 78899999999854321 1236678999999999988877543211 235799999876 599
Q ss_pred ceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCc
Q 014220 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRK 209 (428)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~ 209 (428)
+++|+|++........+++|++++..+ .|+. |+... ..-.||.++ .+++|+.||+.+..
T Consensus 79 ~yy~yy~~~~~~~~~~i~va~sd~~~G----pw~~----~~~~~--------~~~IDp~~f-~D~dG~~Yl~~~~~---- 137 (269)
T cd08989 79 KFWLIYTAVKVWKDCHNYLFTAEDITG----PWSR----PIFLN--------YGGFDPSLF-HDDDGKKYLINMGW---- 137 (269)
T ss_pred EEEEEEeccccCCCceEEEEEECCCCC----CCcC----CEECC--------CCcccCceE-EcCCCCEEEEecCC----
Confidence 999999986433345678898876532 3543 33321 134799964 55789999998753
Q ss_pred cEEEEEE-eCCCCCcEEcccc----cccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCC
Q 014220 210 GLAILYR-SKDFVHWIKAKHP----LHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (428)
Q Consensus 210 G~i~ly~-S~Dl~~W~~~~~~----l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~ 274 (428)
+.|.+.+ +.|...= .+.+ +.........|-|.+++.+ | +++|++|...
T Consensus 138 ~~i~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~Egp~~~k~~--G-------------~YYl~~S~~~ 190 (269)
T cd08989 138 SGIRLQEYSPAEKKL--IGKPLNKVIIKGTDDGLTEGPHLYKIN--G-------------KYYLTTAEGG 190 (269)
T ss_pred CcEEEEEEChhhCCC--CCCceeEEEecCCCCCccccceEEEEC--C-------------EEEEEEeeCC
Confidence 2234433 2332110 1111 1111123478999999986 5 7788888643
No 34
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.13 E-value=5.3e-09 Score=102.08 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=110.6
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCC-----------ccCCCeEeeeEE
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-----------SDINGCWSGSAT 124 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-----------~D~~gv~SGsav 124 (428)
+..-||. +++++|+|+||....-. ...+..++|+||+||+..+.++.+... .-..++|.+.++
T Consensus 9 ~~~~DP~-v~~~~~~yY~~~t~~~~-----~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~ 82 (269)
T cd09001 9 ADYPDPD-VIRVGDDYYMVSTTMHY-----SPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLR 82 (269)
T ss_pred CCCCCCe-EEEECCEEEEEECCccc-----CCCCEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceE
Confidence 5567995 77899999999864211 124678899999999999877643211 113579999987
Q ss_pred EcCCCceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEee
Q 014220 125 ILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGS 204 (428)
Q Consensus 125 ~~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga 204 (428)
. .+|+++|+|+... ..+.+|+|++.. -.|+.. +++ ....||.|+ .+++|+.||+++.
T Consensus 83 ~-~~gkyy~yys~~~----~~~~v~~a~~p~----Gpw~~~--~~~-----------~~~iDp~~f-~D~dG~~Yl~~~~ 139 (269)
T cd09001 83 Y-HNGTFYVFFCTNT----GGTYIYTADDPE----GPWTKT--ALD-----------GGYHDPSLL-FDDDGTAYLVYGG 139 (269)
T ss_pred E-ECCEEEEEEEecC----CCeEEEEcCCCC----CCCcCC--CcC-----------CCcccCceE-EcCCCCEEEEeCC
Confidence 6 4999999999852 346788876643 245432 111 134799965 5578999999975
Q ss_pred ecCCccEEEEEE-eCCCCCcEEcccccccCC--CCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 205 KINRKGLAILYR-SKDFVHWIKAKHPLHSVK--GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 205 ~~~~~G~i~ly~-S~Dl~~W~~~~~~l~~~~--~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
. .+.+.+ +.|+....-....+.... .....|-|.+++-+ | +++|++|..
T Consensus 140 ~-----~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~--G-------------~YYl~~S~~ 191 (269)
T cd09001 140 G-----TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKIN--G-------------YYYIFNIAW 191 (269)
T ss_pred C-----cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEEC--C-------------EEEEEEecC
Confidence 3 244443 567666521111222221 13578999999876 5 788888875
No 35
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.12 E-value=1.2e-09 Score=106.47 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=75.4
Q ss_pred eeEEEcCCCceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEE
Q 014220 121 GSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRV 200 (428)
Q Consensus 121 Gsav~~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~M 200 (428)
..++. .+|+++|||++...+....+++|+|.|+ .+|++.+ +|++.++....++...++||.|+. .+|+|+|
T Consensus 3 P~v~~-~~G~y~l~y~~~~~~~~~~ig~A~S~Dg-----~~~~~~~-~~~i~p~~~~~~~~~gv~dP~v~~--~~g~y~m 73 (268)
T cd08993 3 PAVVY-DNGEFYLLYRAAGNDGVIRLGLARSRDG-----LHFEIDP-DPPVWPPPEDGFEEGGVEDPRIVK--IDDTYYI 73 (268)
T ss_pred CeEEE-ECCEEEEEEEEECCCCceEEEEEEECCC-----ceEEECC-cceEcCCCCCcccccCccCcEEEE--ECCEEEE
Confidence 45655 5999999999876556778999999985 7999975 455533211334567889999764 4789999
Q ss_pred EEeeec--CCccEEEEEEeCCCCCcEEccc
Q 014220 201 IIGSKI--NRKGLAILYRSKDFVHWIKAKH 228 (428)
Q Consensus 201 v~ga~~--~~~G~i~ly~S~Dl~~W~~~~~ 228 (428)
++++.. ....+|.+++|+|+.+|++.+.
T Consensus 74 ~Yta~~~~~~~~~i~lA~S~D~~~W~~~~~ 103 (268)
T cd08993 74 TYAARPNAPNGTRIGLATTKDFITFERLGT 103 (268)
T ss_pred EEEccCCCCCCcEEEEEEeCCcceEEEecc
Confidence 998875 3456899999999999998764
No 36
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.11 E-value=4.8e-09 Score=103.16 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=118.5
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCC--CCCC-CccCCCeEeeeEEEcCCCceEEEEc
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAI--YPSQ-QSDINGCWSGSATILPGEKPAIFYT 136 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al--~P~~-~~D~~gv~SGsav~~~dg~~~l~YT 136 (428)
||. ++..+++|+|++.... .....++|+||++|+.....+ .+.. .+...++|.+.+.. .+|+++|+|+
T Consensus 2 DP~-v~~~~d~yY~~~T~~~-------~~~~i~~S~dl~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~-~~g~yylyys 72 (288)
T cd08980 2 DPW-VIRHDGYYYFTATTGE-------DRIELRRSDTLAGLATAESKVVWTPPDSGPYSGNLWAPELHY-IDGKWYIYFA 72 (288)
T ss_pred CCe-EEEECCEEEEEEEeCC-------CcEEEEecCChhHhhcCCcEEEecCCCCCCccccEECceEEE-ECCEEEEEEE
Confidence 895 7788899999987431 357899999999999875432 2222 13446899999876 5899999999
Q ss_pred ccCC--CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC---CccE
Q 014220 137 GIDP--HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN---RKGL 211 (428)
Q Consensus 137 g~~~--~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~---~~G~ 211 (428)
.... ...+.+.+|++++..++ +..|+.. .+++... . ..-.||.++ .+ +|++||+++.... ....
T Consensus 73 ~~~~~~~~~~~~~v~~a~~~~~~-~Gpw~~~--~~~~~~~--~----~~~iDp~~~-~d-dG~~Yl~~~~~~~~~~~~~~ 141 (288)
T cd08980 73 AGDGGGNANHRMYVLENAGADPP-TGPWTFK--GRLADPT--D----RWAIDGTVF-EH-NGQLYFVWSGWEGRTNGNQN 141 (288)
T ss_pred ccCCCCCcceeEEEEEeCCCCCC-CCCceEe--eEeccCC--C----CeeeeeEEE-EE-CCEEEEEEEccCCCCCCCcc
Confidence 8753 23456677877642112 3578874 2444222 1 234699965 43 5999999976432 2234
Q ss_pred EEEEEeCCCCCcEEcccccccCCC------CCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCeeeEEEEE
Q 014220 212 AILYRSKDFVHWIKAKHPLHSVKG------TGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVGT 284 (428)
Q Consensus 212 i~ly~S~Dl~~W~~~~~~l~~~~~------~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~Y~vG~ 284 (428)
|.+.+.++...+.-....+..+.. ....|-|.+++.+ | +++|++|........|.+|-
T Consensus 142 i~~~~l~~~~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~--G-------------~yYl~yS~~~~~~~~Y~v~~ 205 (288)
T cd08980 142 LYIAKMSNPWTLTGPRVLISRPEYDWERQGPGVNEGPAALKRN--G-------------KVFLTYSASGSWTPDYCLGL 205 (288)
T ss_pred EEEEECCCCCccCCcceEecCCCCCceecCceeeECcEEEEEC--C-------------EEEEEEECCCCCCCCCEEEE
Confidence 556665553344311111222211 1457999999997 5 78888887543344566654
No 37
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=99.08 E-value=5.5e-09 Score=102.62 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=84.7
Q ss_pred CccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEEc
Q 014220 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYT 136 (428)
Q Consensus 57 w~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YT 136 (428)
..-|| .+++.+|+|+|+..... ....+...+|+||+||+..+.++.+. ..++|.+.++. .+|+++|+|+
T Consensus 14 ~~~DP-~i~~~~~~yY~~~t~~~-----~~~gi~i~~S~DL~~W~~~g~~~~~~----~~~~WAP~i~~-~~gkyy~yys 82 (280)
T cd09002 14 DYPDP-SILRDGEDYYMTHSSFK-----YTPGLVIWHSRDLVNWTPVGPALPEY----EGDVWAPDLCK-YDGRYYIYFP 82 (280)
T ss_pred CCCCC-EEEEECCEEEEEEcchh-----cCCCEEEEECCCcCCceEccccccCC----CCCEEcCeeEE-ECCEEEEEEE
Confidence 44599 47889999999764211 12357788999999999988877542 35789998876 6999999999
Q ss_pred ccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEee
Q 014220 137 GIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGS 204 (428)
Q Consensus 137 g~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga 204 (428)
.........+.+|++.+.. -.|++ |+.... ....||.|++ +++|++||+++.
T Consensus 83 ~~~~~~~~~~~va~ad~p~----Gpw~~----~~~~~~-------~~~IDp~vf~-DddG~~Yl~~~~ 134 (280)
T cd09002 83 AIPEGGNWTNMVIWADSPE----GPWSK----PIDLKI-------GGCIDPGHVV-DEDGNRYLFLSG 134 (280)
T ss_pred eecCCCCceEEEEEECCCC----CCCcC----CEecCC-------CCccCCceEE-cCCCCEEEEECC
Confidence 8754445667889886653 24653 221111 1235999654 578999999864
No 38
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=98.96 E-value=3.9e-08 Score=95.45 Aligned_cols=202 Identities=17% Similarity=0.321 Sum_probs=127.3
Q ss_pred ccCCCCC---ccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCC----CCCCccCCCeEeeeE
Q 014220 51 FQPPKNW---INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY----PSQQSDINGCWSGSA 123 (428)
Q Consensus 51 ~~p~~gw---~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~----P~~~~D~~gv~SGsa 123 (428)
..|+.|| +.||- +++++|+||||-..... ..|+-+-+. |++|+..+.|+. +.. -..+.|.+.+
T Consensus 14 ~~pk~~~~~~lkDPt-iv~~nGkYyvYgT~~~~------~~~~s~~~S-f~~Ws~~g~A~q~~l~~~~--~~~~fwAPqV 83 (303)
T cd08987 14 ISPKSDWIVAIKDPT-VVYYNGRYHVYATTADA------GNYGSMYFN-FTDWSQAASATQYYLQNGN--MTGYRVAPQV 83 (303)
T ss_pred ccCCCCCeeeecCCe-EEEECCEEEEEEccCCC------CCceeeeec-ccCHhHhccchhhcccCCC--CCcccccCEE
Confidence 4677899 79995 67899999999765431 124333333 999999887653 221 2356788887
Q ss_pred EE-cCCCceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEE
Q 014220 124 TI-LPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVII 202 (428)
Q Consensus 124 v~-~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ 202 (428)
+. .+++++||+|+.. ..++|+|+|..++ ..|... .|++... ........-|+.|+ . ++++.||+.
T Consensus 84 fyf~pk~kwYL~Yq~~------~~~yaTs~dp~~P--~~ws~~--qpl~~~~--~~~~~~~~ID~~vI-~-Dd~~~YLff 149 (303)
T cd08987 84 FYFAPQNKWYLIYQWW------PAAYSTNSDISNP--NGWSAP--QPLFSGT--PNGSPGGWIDFWVI-C-DDTNCYLFF 149 (303)
T ss_pred eeeccCCEEEEEEecC------ceEEEeCCCCCCC--CccCCC--cccccCc--ccCCCCCccceeEE-e-CCCCEEEEE
Confidence 72 3689999999951 1468889888776 467763 5777532 11223456899974 4 477788887
Q ss_pred eeecCCccEEEEEEeC-CCCCcEEc-ccc--ccc-CCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCe
Q 014220 203 GSKINRKGLAILYRSK-DFVHWIKA-KHP--LHS-VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKH 277 (428)
Q Consensus 203 ga~~~~~G~i~ly~S~-Dl~~W~~~-~~~--l~~-~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~ 277 (428)
... .| .+|+|+ .+.+.-.. ++. +.. .......|-|++++++ | +.+++|++++.+..+
T Consensus 150 ~~d---nG--~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~--G-----------~~~YlmiveA~g~~~ 211 (303)
T cd08987 150 SDD---NG--KLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVK--G-----------QNQYLLIVEAIGSDG 211 (303)
T ss_pred ecC---CC--eEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEEC--C-----------CeEEEEEEEecCCCC
Confidence 542 24 577762 22222110 111 111 1234689999999998 5 248999999876545
Q ss_pred eeEEEEEeeCC--CCcccCC
Q 014220 278 EYYTVGTYSTA--KDRYVPD 295 (428)
Q Consensus 278 ~~Y~vG~~d~~--~~~f~p~ 295 (428)
..|+++ +-.. .|.++|.
T Consensus 212 ~rYfrs-~Ts~Sl~GpWt~~ 230 (303)
T cd08987 212 GRYFRS-WTATSLDGPWTPL 230 (303)
T ss_pred CCeEEE-EEcCCCCCCceec
Confidence 568887 4322 3455543
No 39
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.92 E-value=7.1e-08 Score=95.49 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=102.0
Q ss_pred ccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEEcc
Q 014220 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTG 137 (428)
Q Consensus 58 ~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg 137 (428)
.-||. +++++|+|+|+-.... +..+|+||++|+..+.++. ..++|.+++.. .+|+++++++.
T Consensus 3 ~~DP~-i~~~~g~YY~~~T~~~----------~i~~S~DL~~W~~~g~~~~------~~~~WAP~i~~-~~g~~Y~~~~~ 64 (295)
T cd08982 3 AADPV-VILFKGEYYLFASMSG----------GYWHSSDLIDWDFIPTNSL------PDEGYAPAVFV-YDGTLYYTAST 64 (295)
T ss_pred CCCCe-EEEECCEEEEEEeCCC----------CeEECCCcCCceECCcccC------CCCcCcCEEEE-ECCEEEEEEeC
Confidence 36995 7788999998865421 2678999999999987764 46789999876 58886665553
Q ss_pred cCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEEE--
Q 014220 138 IDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILY-- 215 (428)
Q Consensus 138 ~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly-- 215 (428)
. .+.+|+|++...+ .|... + .. ......||.|+ .+++|+.||++|.... .+ |.+.
T Consensus 65 ~------~~~v~~s~~p~gp---~w~~~----~--~~-----~~~~~IDp~vf-~DdDGk~Yl~~g~~~~-~~-i~~~eL 121 (295)
T cd08982 65 Y------NSRIYKTADPLSG---PWEEV----D--KS-----FPPGLADPALF-IDDDGRLYLYYGCSNN-YP-LRGVEV 121 (295)
T ss_pred C------CceEEEeCCCCCC---Ccccc----c--cc-----cCCCccCCceE-ECCCCCEEEEEecCCC-CC-eEEEEE
Confidence 2 2457888765321 24431 0 01 11235799964 5578999999975321 11 1111
Q ss_pred ----------------EeCCCCCcEEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCeee
Q 014220 216 ----------------RSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEY 279 (428)
Q Consensus 216 ----------------~S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~~~ 279 (428)
.+..-..|+..+............|-|.+++.+ | +++|++|........
T Consensus 122 ~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~--G-------------~YYL~yS~~~~~~~~ 186 (295)
T cd08982 122 DPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWMEGAWMTKHN--G-------------KYYLQYAAPGTEFNT 186 (295)
T ss_pred CcccCCccCcceEEEeCCCCCcCeEecCcccccccCCccccccEEEEEC--C-------------EEEEEEeCCCcccCc
Confidence 122223455433211111123467889888865 5 788888865433334
Q ss_pred EEEEE
Q 014220 280 YTVGT 284 (428)
Q Consensus 280 Y~vG~ 284 (428)
|.+|-
T Consensus 187 Y~v~~ 191 (295)
T cd08982 187 YADGV 191 (295)
T ss_pred EeEEE
Confidence 55444
No 40
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=98.90 E-value=4.1e-08 Score=100.00 Aligned_cols=200 Identities=19% Similarity=0.151 Sum_probs=119.9
Q ss_pred CCCCccCCcceEE--------ECCEEEEEEeeCCCC----CCCCCcEEEEEEeCCCC----CCccCCCCCCCCCCc-cCC
Q 014220 54 PKNWINDPNGVMI--------YKGIYHLFYQYNPKG----AVWGNIVWAHSTSKDLI----NWIPHDPAIYPSQQS-DIN 116 (428)
Q Consensus 54 ~~gw~nDPng~~~--------~~G~YHlFYq~~p~~----~~~g~~~Wgha~S~Dlv----~W~~~~~al~P~~~~-D~~ 116 (428)
+.=|+.|-+ ++. ++|.--+|-+..+.. ..|+..++++.-|++.. +|+..+.++..+... ...
T Consensus 52 ~dldVWDsW-PLqd~~G~~~~~~Gy~vvfaL~a~r~~~~~~Rh~~A~I~~fY~k~G~~~~~~W~~~G~vf~~g~~~~~~s 130 (428)
T PF02435_consen 52 DDLDVWDSW-PLQDADGNVVNYNGYQVVFALTADRHEDPDDRHDDARIYLFYSKDGDNANDGWKNGGPVFPEGASFVPGS 130 (428)
T ss_dssp TE-EEEEEE-EEE-TTSSBEEBTTEEEEEEEEE-TT--GGGCSCGEEEEEEEEETT--SGGG-EEEEESS-TTCCCCGCE
T ss_pred cceeeeccc-eeecccccEEEECCEEEEEEEecCCccCCccccCCcEEEEEEecCCCCccCCceECcccCCCCCCCCccC
Confidence 355666643 333 478666666666543 35678899999999998 999999877555431 234
Q ss_pred CeEeeeEEEcC-CCceEEEEcccCC--C--CcceE-----EEEEEcCCCCCccceeEecCCCceecCCC--C---CCCCC
Q 014220 117 GCWSGSATILP-GEKPAIFYTGIDP--H--NRQVQ-----NLAVPKNLSDPYLREWVKSPKNPLMAPDA--M---NQINT 181 (428)
Q Consensus 117 gv~SGsav~~~-dg~~~l~YTg~~~--~--~~~~q-----~lA~S~D~~d~~l~~w~k~~~nPvi~~~~--~---~~~~~ 181 (428)
--|||||++.. ||++.||||++.. . ..|+. +++.+.+. .--+..|++. ..++.++. + .....
T Consensus 131 ~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~-~v~i~g~~~~--~~lfe~DG~~Yqt~~Q~~~ 207 (428)
T PF02435_consen 131 REWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDD-GVWITGFSNH--HELFEGDGKHYQTYEQNPG 207 (428)
T ss_dssp EEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECST-EEEEEEEEEE--EEEES--SSSB--HHHHHH
T ss_pred cEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCC-ceeEccccce--eEeeccchhhhhChhhcCC
Confidence 57999999987 7999999999643 1 22322 12222221 1123345543 35555431 0 00112
Q ss_pred CCccCCeEEEECCCCeEEEEEeeec---C------------------------------CccEEEEEEeCC--CCCcEEc
Q 014220 182 SSFRDPTTAWLGPDKRWRVIIGSKI---N------------------------------RKGLAILYRSKD--FVHWIKA 226 (428)
Q Consensus 182 ~~~RDP~V~~~~~~g~y~Mv~ga~~---~------------------------------~~G~i~ly~S~D--l~~W~~~ 226 (428)
..||||++|-...+|+-||+.-+.. + ..|+|.+.+.+| +..|+..
T Consensus 208 ~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~ 287 (428)
T PF02435_consen 208 YAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELL 287 (428)
T ss_dssp ---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEE
T ss_pred ccccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEe
Confidence 5799999653336899999985432 0 146888888754 4579988
Q ss_pred ccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEee
Q 014220 227 KHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSL 272 (428)
Q Consensus 227 ~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~ 272 (428)
..++.+..-....|.|++++++ | ||+|+.+.
T Consensus 288 ~PL~~a~~v~de~ERP~iv~~~--g-------------kyYLFt~s 318 (428)
T PF02435_consen 288 PPLLSANGVNDELERPHIVFMN--G-------------KYYLFTIS 318 (428)
T ss_dssp EEEEEETTTBS-EEEEEEEEET--T-------------EEEEEEEE
T ss_pred CcceecccccccccCCcEEEEC--C-------------EEEEEEEe
Confidence 6444444445689999999998 6 88887654
No 41
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=4.2e-08 Score=95.11 Aligned_cols=149 Identities=20% Similarity=0.300 Sum_probs=110.2
Q ss_pred CCcceEEECCEEEEEEee------CCCCCCCCCcEEEEEEeCCCCC-CccCC-CCCCC-CCCccCCCeEeeeEEEcCCCc
Q 014220 60 DPNGVMIYKGIYHLFYQY------NPKGAVWGNIVWAHSTSKDLIN-WIPHD-PAIYP-SQQSDINGCWSGSATILPGEK 130 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~------~p~~~~~g~~~Wgha~S~Dlv~-W~~~~-~al~P-~~~~D~~gv~SGsav~~~dg~ 130 (428)
.| ++++.++++||+|+- .+. ...+.+.|.|+|+++ |+.++ +.+.| ..++|..||..+.++.. +++
T Consensus 33 Np-av~~~~~~~~~l~Rv~~~yye~~~----~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I-~~~ 106 (314)
T COG2152 33 NP-AVVLVGGELLLLYRVVEGYYEDHS----SISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVTKI-GGR 106 (314)
T ss_pred cc-eeEEECCEEEEEEEEeccccccCc----cceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEEEE-CCE
Confidence 35 688899999999997 332 346889999999999 98764 77889 55777899999999874 899
Q ss_pred eEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC---
Q 014220 131 PAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--- 207 (428)
Q Consensus 131 ~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~--- 207 (428)
++|.|||.+ +..+..++|++.|- .+|+|.+ +++.+ +.||-.++=...+|+|.|+---...
T Consensus 107 y~mtYTa~s-~~g~~~~la~t~~f-----~n~~rig--~i~~p---------dn~~~~lfP~~~ngk~~~lhr~~~~~~~ 169 (314)
T COG2152 107 YYMTYTAYS-DKGPRLALAVTKDF-----LNWERIG--AIFPP---------DNKDAALFPKKINGKYALLHRPVLGEYG 169 (314)
T ss_pred EEEEEEecC-CCCcccchhhhhhh-----hhhhhcc--cccCC---------CCCCceEeeEEecCcEEEEEeecccccC
Confidence 999999985 45667788988874 6799862 44422 2345443212246889888653332
Q ss_pred CccEEEEEEeCCCCCcEEcccccc
Q 014220 208 RKGLAILYRSKDFVHWIKAKHPLH 231 (428)
Q Consensus 208 ~~G~i~ly~S~Dl~~W~~~~~~l~ 231 (428)
..+-|.+..|.|+.+|.....++.
T Consensus 170 ~~~niwia~S~dl~~w~~~~~~l~ 193 (314)
T COG2152 170 MKGNIWIAFSPDLEHWGIHRKLLG 193 (314)
T ss_pred ccCceEEEEcCCccCCCccceeec
Confidence 256799999999999987655444
No 42
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=98.71 E-value=1.1e-07 Score=93.43 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=81.6
Q ss_pred cCCcceEEECCEEEEEEeeCCCC----CCCCCcEEEEEEeCCC-CCCcc-CCCCCCCCC-CccCCCeEeeeEEEcCCCce
Q 014220 59 NDPNGVMIYKGIYHLFYQYNPKG----AVWGNIVWAHSTSKDL-INWIP-HDPAIYPSQ-QSDINGCWSGSATILPGEKP 131 (428)
Q Consensus 59 nDPng~~~~~G~YHlFYq~~p~~----~~~g~~~Wgha~S~Dl-v~W~~-~~~al~P~~-~~D~~gv~SGsav~~~dg~~ 131 (428)
.+|. +++.+|+|+|||...... .......+|.|+|+|+ .+|++ ..++|.|.. .||..++..++++...+|++
T Consensus 81 ~~P~-vi~~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~ 159 (291)
T cd08994 81 HNPT-IKRFDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSY 159 (291)
T ss_pred cCCe-EEEECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCE
Confidence 5784 678899999999976531 1223568999999994 69998 456777754 37888899999987558999
Q ss_pred EEEEcccCCC---CcceEEEEEEcCCCCCccceeEecCCCcee
Q 014220 132 AIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLM 171 (428)
Q Consensus 132 ~l~YTg~~~~---~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi 171 (428)
+|+|+|.... ..+.+++|+|.|.. .+|+|...+||+
T Consensus 160 ~m~y~g~~~~~~~~~~~~gla~s~d~~----g~~~~~~~~~v~ 198 (291)
T cd08994 160 LLVYKGGTYNPTKGNRKYGVAIADSPT----GPYTKVSGPPFI 198 (291)
T ss_pred EEEEeccccCCCCCcEEEEEEEeCCCC----CCCEECCCCccc
Confidence 9999998642 45778999998753 479997656654
No 43
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=98.66 E-value=7.8e-07 Score=86.99 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=86.7
Q ss_pred ccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCC--CCCCCCCCccCCCeEeeeEEEcC-CCceEEE
Q 014220 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHD--PAIYPSQQSDINGCWSGSATILP-GEKPAIF 134 (428)
Q Consensus 58 ~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~--~al~P~~~~D~~gv~SGsav~~~-dg~~~l~ 134 (428)
+-.|+ ++..+|+|||||..+... .......++|+|+|+++|+..+ +.+.+...++...+-.+.++.++ +|+++|+
T Consensus 62 ~~sgs-~~~~~g~~~l~YTg~~~~-~~~~~~i~~A~S~D~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~ 139 (280)
T cd08995 62 IGTGS-VIKGEGTYHAFYTGHNLD-GKPKQVVMHATSDDLITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWML 139 (280)
T ss_pred ceEeE-EEeeCCEEEEEEEEECCC-CCCcEEEEEEECCCCCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEE
Confidence 45564 567899999999876432 1134578999999999999865 33432223333344467777643 5899999
Q ss_pred EcccCC----CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec
Q 014220 135 YTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (428)
Q Consensus 135 YTg~~~----~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~ 206 (428)
|.+... .....+.++.|.| |.+|+.. .+++.+. . ...+.=|.+ ++ .+|+|+|+++.+.
T Consensus 140 ~g~~~~~~~~~~~g~i~~~~S~D-----l~~W~~~--~~~~~~~--~---~~~~E~P~l-~~-~~g~~~L~~s~~~ 201 (280)
T cd08995 140 LATRLLDGPYNRRGCIALFTSKD-----LKNWEYE--EPFYAPG--L---YFMPECPDL-FK-MGDWWYLVYSEFS 201 (280)
T ss_pred EEeccCCCCCCCCeEEEEEEeCC-----cCcceec--CceecCC--C---cceeecceE-EE-ECCEEEEEEEecc
Confidence 976542 2334566677766 5799875 4665432 1 123567875 44 4789999998764
No 44
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=98.63 E-value=2.1e-07 Score=92.80 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=79.4
Q ss_pred CCCeEeeeEEEcCCCc--eEEEEcccCCCCcc-eEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEE
Q 014220 115 INGCWSGSATILPGEK--PAIFYTGIDPHNRQ-VQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAW 191 (428)
Q Consensus 115 ~~gv~SGsav~~~dg~--~~l~YTg~~~~~~~-~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~ 191 (428)
...||.+.|++. +|+ ++|+|.+....... .+++|.|.|+ .+|++. .+||+.|. ..++.....||.|+.
T Consensus 29 ~~~vfNpgai~~-~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-----i~f~~~-~~pil~P~--~~~e~~GvEDPRVt~ 99 (312)
T PF04041_consen 29 PNAVFNPGAIVF-DGGLRVYLLYRAYGSDIGSSRIGLARSDDG-----IHFERD-PEPILYPD--TDYEEWGVEDPRVTK 99 (312)
T ss_dssp SSEEEEEEEEEE-TTE--EEEEEEEEESSSSEEEEEEEEESSS-----SS-EE--SS-SBEE---SSTTHTEEEEEEEEE
T ss_pred cceEEcCcEEEE-CCeeEEEEEEEeECCCCceeEEEEEEccCC-----cCceEC-CCCEEccC--CCCcccCccceeEEE
Confidence 467999999865 554 89999887655444 7999999997 689886 57999776 445666789999876
Q ss_pred ECCCCeEEEEEeeecCCccEEEEEEeCCCCCcEEccc
Q 014220 192 LGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKH 228 (428)
Q Consensus 192 ~~~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~ 228 (428)
. +++|+|++.+......++.+.+|+|+.+|+..+.
T Consensus 100 i--~d~yymtYta~~~~~~~~~la~s~D~~~~~r~g~ 134 (312)
T PF04041_consen 100 I--DDTYYMTYTAYSGKGPRIGLATSKDFKHWERHGK 134 (312)
T ss_dssp E--TTEEEEEEEEEESSSEEEEEEEESSSSSEEEEEC
T ss_pred E--CCEEEEEEEEecCCCcccceEEccchHhhEEecc
Confidence 5 6799999998876667889999999999999874
No 45
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.63 E-value=2.1e-06 Score=84.05 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=98.5
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccCCCCC-C-CCCCccCCCeEeeeEEEcCCCceE
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAI-Y-PSQQSDINGCWSGSATILPGEKPA 132 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~~~al-~-P~~~~D~~gv~SGsav~~~dg~~~ 132 (428)
+-+..| -+++.+|+|||||..+..+ .....+++|+|+|.. .|+..+..+ . +.. ..++..+++++++||+++
T Consensus 60 ~~~waP-~v~~~~g~y~~~y~~~~~~--~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~---~~~~~Dp~v~~d~dG~~Y 133 (287)
T cd08999 60 GDFWAP-DVSYVNGKYVLYYSARDKG--SGGQCIGVATADSPLGPFTDHGKPPLCCPEG---EGGAIDPSFFTDTDGKRY 133 (287)
T ss_pred CCccCc-eEEEECCEEEEEEEeecCC--CCCEEEEEEECCCCCCCCccCCcceEecCCC---CCCccCCCeEECCCCCEE
Confidence 345677 4788999999999876543 235679999999965 899875332 2 221 234566888886689999
Q ss_pred EEEcccCCC--CcceEEEE-EEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec--C
Q 014220 133 IFYTGIDPH--NRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI--N 207 (428)
Q Consensus 133 l~YTg~~~~--~~~~q~lA-~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~--~ 207 (428)
|+|.+.... ..+.+.++ +|.| +.+|.... ..++.+. .......+.-|.++ + .+|+|||++++.. .
T Consensus 134 l~~~~~~~~~~~~~~i~~~~ls~d-----~~~~~~~~-~~i~~~~--~~~~~~~~EgP~i~-k-~~g~yyl~~S~~~~~~ 203 (287)
T cd08999 134 LVWKSDGNSIGKPTPIYLQELSAD-----GLTLTGEP-VRLLRND--EDWEGPLVEAPYLV-K-RGGYYYLFYSAGGCCS 203 (287)
T ss_pred EEEeccCCCCCCCceEEEEEeCCC-----CccccCCc-Eeeeccc--ccccCCceEeeEEE-E-ECCEEEEEEEcCCccC
Confidence 999764321 11223343 4444 25565321 2333322 22233456789864 4 4899999998653 1
Q ss_pred C--ccEEEEEEeCCCC-CcEEccc
Q 014220 208 R--KGLAILYRSKDFV-HWIKAKH 228 (428)
Q Consensus 208 ~--~G~i~ly~S~Dl~-~W~~~~~ 228 (428)
. .=.+.+++|+++. .|+....
T Consensus 204 ~~~~y~i~~~~s~~~~Gpw~~~~~ 227 (287)
T cd08999 204 GASTYAVGVARSKSLLGPYVKAPG 227 (287)
T ss_pred CCCCEEEEEEEeCCCcCCcCCCCC
Confidence 1 2357889999987 7886543
No 46
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=98.62 E-value=4.8e-06 Score=81.24 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=96.0
Q ss_pred CCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccCCCC-CCCCCCccCCCeEeeeEEEcCCCceE
Q 014220 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPA-IYPSQQSDINGCWSGSATILPGEKPA 132 (428)
Q Consensus 55 ~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~~~a-l~P~~~~D~~gv~SGsav~~~dg~~~ 132 (428)
.+-+.-|. +++++|+|||||..... .+....++|+|+|.. .|++.... +.+ ...+......+++++++||+++
T Consensus 61 ~~~~wAP~-i~~~~g~yy~yy~~~~~---~~~~~igva~s~~p~Gpw~~~~~~~~~~-~~~~~~~~iDp~vf~d~dG~~y 135 (274)
T cd08990 61 KGQAWAPD-VVEKNGKYYLYFPARDK---DGGFAIGVAVSDSPAGPFKDAGGPILIT-TPSGGWYSIDPAVFIDDDGQAY 135 (274)
T ss_pred cCCcCcCe-EEEECCEEEEEEEeecC---CCceEEEEEEeCCCCCCCCCCCCccccc-cCCCCCCccCCcEEECCCCCEE
Confidence 45577885 78899999999987643 235679999999976 79987543 322 2222344567888887789999
Q ss_pred EEEcccCCCCcceEEEE-EEcCCCCCccceeEecCCCceecCCC-CCCCCCCCccCCeEEEECCCCeEEEEEeeecCCcc
Q 014220 133 IFYTGIDPHNRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDA-MNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKG 210 (428)
Q Consensus 133 l~YTg~~~~~~~~q~lA-~S~D~~d~~l~~w~k~~~nPvi~~~~-~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G 210 (428)
|+|.+. +.+.++ .+.| +.+|+.. ..++..++ ..........-|.++ + .+|+|||++++.. ..
T Consensus 136 l~~~~~-----~~~~~~~l~~d-----~~~~~~~--~~~i~~~~~~~~~~~~~~EgP~i~-k-~~G~YYl~yS~~~--~~ 199 (274)
T cd08990 136 LYWGGG-----LGLRVAKLKPD-----MLSLKGE--PVEIVITDGAGDELRRFFEAPWVH-K-RNGTYYLSYSTGD--PE 199 (274)
T ss_pred EEECCc-----CCEEEEEeCcc-----ccccCCC--cEEEEeccccCCCCCCcccceeEE-E-ECCEEEEEEECCC--Cc
Confidence 999864 223344 3333 3566532 22332110 001112234578854 4 4899999998753 34
Q ss_pred EEEEEEeCCCC-CcEEcccc
Q 014220 211 LAILYRSKDFV-HWIKAKHP 229 (428)
Q Consensus 211 ~i~ly~S~Dl~-~W~~~~~~ 229 (428)
.+.+.+|+++. .|+..+.+
T Consensus 200 ~~~~a~s~~p~GP~~~~g~~ 219 (274)
T cd08990 200 EIAYATSDSPLGPFTYRGVI 219 (274)
T ss_pred EEEEEEcCCCCCCcccCcEE
Confidence 67778888875 47655433
No 47
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.60 E-value=8e-07 Score=87.18 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=63.6
Q ss_pred CCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-----CCccEEEEEEeCCCCCcEEcccccccC-CCCCeee
Q 014220 167 KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-----NRKGLAILYRSKDFVHWIKAKHPLHSV-KGTGMWE 240 (428)
Q Consensus 167 ~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-----~~~G~i~ly~S~Dl~~W~~~~~~l~~~-~~~~~wE 240 (428)
++||+.+. . ....+|||+|++..++|+|||+..... .....|.+++|+||++|+..+..+... ..+.+|
T Consensus 5 ~~pvl~~~--~--g~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~~~~~~W- 79 (276)
T cd08983 5 GNPVLTST--A--GTKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPPNAGNTW- 79 (276)
T ss_pred CceEEeCC--c--CCCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCCCcCcEe-
Confidence 68999765 2 357899999876546889999887542 123368999999999999876433222 223467
Q ss_pred cCceEEeccCCCCCccccCCCCCceeEEEEeeC
Q 014220 241 CPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 241 CPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
+|+++..+..| +|+|.+|..
T Consensus 80 APev~~d~~~g-------------~y~~~~s~~ 99 (276)
T cd08983 80 APEAFWDAERG-------------QYVVYWSSR 99 (276)
T ss_pred CccceEcCCCC-------------eEEEEEecc
Confidence 99999986433 788888864
No 48
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.58 E-value=9.4e-06 Score=79.85 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=95.8
Q ss_pred CCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEE
Q 014220 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAI 133 (428)
Q Consensus 55 ~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l 133 (428)
...+..|. +++.+|+|||||...... ......++|+|+|.. .|+..+..+.+.. .....++++.++||+++|
T Consensus 52 ~~~~waP~-v~~~~g~yyl~ys~~~~~--~~~~~i~~a~s~~p~gp~~~~~~~~~~~~----~~~iD~~vf~d~dG~~yl 124 (294)
T cd08991 52 RRGFWAPE-VYYYNGKFYMYYSANDRD--EKTEHIGVAVSDSPLGPFRDIKKPPIDFE----PKSIDAHPFIDDDGKPYL 124 (294)
T ss_pred CCcEEccE-EEEECCEEEEEEEeccCC--CCcceEEEEEeCCCCCCCCcCCCCcccCC----CcccCCceEECCCCCEEE
Confidence 34566885 889999999999876432 235678999999976 7887654333321 234568888877799999
Q ss_pred EEcccCCCC--cceEEEEEEcCCCCCccceeEecCC---CceecC-------C-CC-CCCCCCCccCCeEEEECCCCeEE
Q 014220 134 FYTGIDPHN--RQVQNLAVPKNLSDPYLREWVKSPK---NPLMAP-------D-AM-NQINTSSFRDPTTAWLGPDKRWR 199 (428)
Q Consensus 134 ~YTg~~~~~--~~~q~lA~S~D~~d~~l~~w~k~~~---nPvi~~-------~-~~-~~~~~~~~RDP~V~~~~~~g~y~ 199 (428)
+|+...... ......+.+.|. .+|..... .|+..+ + .. ...+.....-|.++ + .+|+||
T Consensus 125 ~~~~~~~~~~~~~i~~~~l~~d~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~-k-~~g~yy 197 (294)
T cd08991 125 YYSRNNYGNRVSDIYGTELVDDK-----LSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVL-K-HNGRYY 197 (294)
T ss_pred EEEecCCCCcccceEEEEEccce-----eeeccceeeccccccccccccccccccccccccCceeeCcEEE-E-ECCEEE
Confidence 998654321 223344455552 34432111 122111 0 00 00111234568754 4 478999
Q ss_pred EEEeeec-CC-ccEEEEEEeCC-CCCcEEc-ccccc
Q 014220 200 VIIGSKI-NR-KGLAILYRSKD-FVHWIKA-KHPLH 231 (428)
Q Consensus 200 Mv~ga~~-~~-~G~i~ly~S~D-l~~W~~~-~~~l~ 231 (428)
|++.+.. .. .-.+.+++|++ +-.|+.. ..|+.
T Consensus 198 l~ys~~~~~~~~y~~~~a~s~~~~gp~~~~~~~pl~ 233 (294)
T cd08991 198 LTYSANHYENEDYGVGYATADSPLGPWTKYSNNPIL 233 (294)
T ss_pred EEEECCCCCCCCceEEEEEcCCCCCCcEecCCCceE
Confidence 9987643 11 12467888887 4679864 24444
No 49
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=98.58 E-value=3.1e-06 Score=81.54 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=97.4
Q ss_pred CCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEE
Q 014220 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (428)
Q Consensus 55 ~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~ 134 (428)
.+-+.+|. +++.+|+|+|||.....+ ......+.|+|+|+.+|........+ .. ...++..++++.++||+++|+
T Consensus 56 ~~~~waP~-v~~~~g~yyl~y~~~~~~--~~~~~i~~a~s~d~~g~~~~~~~~~~-~~-~~~~~iDp~vf~d~dg~~yl~ 130 (271)
T cd08978 56 SGGLWAPE-VIYYEGKYYLYYSVSDFD--YNGSGIGVATSEDPTGPFEDKVIRPP-TS-NNGNSIDPTVFKDDDGKYYLY 130 (271)
T ss_pred CCceeCCe-EEEECCEEEEEEEcccCC--CCcccEEEEECCCCCCCccccccCcC-cc-CCCCccCcceEEcCCCCEEEE
Confidence 46688995 788999999999987542 23457999999999998765321111 11 224567899988766999999
Q ss_pred EcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC--CccE
Q 014220 135 YTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--RKGL 211 (428)
Q Consensus 135 YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~--~~G~ 211 (428)
|.+.... ....+.++.+.+. ..+.. ..+++... ..........|.++ + .+|+|||++.+... ..-.
T Consensus 131 ~~~~~~~~~~~~i~~~~l~~~-----~~~~~--~~~~~~~~--~~~~~~~~EgP~~~-k-~~g~yyl~ys~~~~~~~~y~ 199 (271)
T cd08978 131 YGSGDPGAGFGGIYISELTDD-----LTKPT--GPPVLSAS--SGNNNAVTEGPTIF-K-KNGYYYLTYSANGTGDYGYN 199 (271)
T ss_pred EecccCCCCCCcEEEEEECcc-----ccccc--CCceeeee--eccCCCceEccEEE-E-ECCEEEEEEEeCCCCCCCce
Confidence 9876421 1234555655442 12222 22332111 11122346789864 4 46899999977542 2346
Q ss_pred EEEEEeCCCC-CcEEc
Q 014220 212 AILYRSKDFV-HWIKA 226 (428)
Q Consensus 212 i~ly~S~Dl~-~W~~~ 226 (428)
+.+++|++.. .|+..
T Consensus 200 ~~~~~s~~~~Gp~~~~ 215 (271)
T cd08978 200 IGYATSDSIDGPYVKK 215 (271)
T ss_pred EEEEECCCCCCCcCcC
Confidence 7788888864 36543
No 50
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=98.46 E-value=7.8e-06 Score=79.05 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCCccCCcceEEEC-CEEEEEEeeCCCCCCCCCcEEEEEEeCCCCC-CccCC--CCCCCC--CCccCCCeEeeeEEEcCC
Q 014220 55 KNWINDPNGVMIYK-GIYHLFYQYNPKGAVWGNIVWAHSTSKDLIN-WIPHD--PAIYPS--QQSDINGCWSGSATILPG 128 (428)
Q Consensus 55 ~gw~nDPng~~~~~-G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~-W~~~~--~al~P~--~~~D~~gv~SGsav~~~d 128 (428)
.+-+..|. +++.+ |+|+|||..... .......+.|+|+|+.. |+... +.+ +. ...+...+..++++.++|
T Consensus 57 ~~~~wap~-v~~~~~g~~~l~yt~~~~--~~~~~~i~~a~s~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dp~v~~d~d 132 (286)
T cd08772 57 SGGIWAPS-IVYIENGKFYLYYTDVSF--TKNQQTIGVATAEDGNGPWTDYIGGPVL-PDNPPAADVSNFRDPFVFEDDD 132 (286)
T ss_pred CCcEecce-EEEcCCCCEEEEEEeecC--CCCceeEEEEEcCCCCCCCccccccccc-cCCCCccccccccCCeEEEcCC
Confidence 34577885 67777 999999987643 12356799999999975 56442 222 22 122334567888888766
Q ss_pred CceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec--
Q 014220 129 EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-- 206 (428)
Q Consensus 129 g~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-- 206 (428)
|+++|+|.+........+.+|.|+|. .+|++....+++... .....+.-|.++ + .+|+|||++++..
T Consensus 133 G~~y~~~~~~~~~~~~~i~~~~s~d~-----~~w~~~~~~~~~~~~----~~~~~~E~P~~~-~-~~g~~yL~~s~~~~~ 201 (286)
T cd08772 133 GKWYLVFGSGDHHNFGGIFLYESDDD-----TTWKKGSAELLISEG----EGGKQIEGPGLL-K-KNGKYYLFYSINGTG 201 (286)
T ss_pred CCEEEEEccccCCCCCeEEEEEcCCC-----CCcccccceeeEeec----cCCCceeccEEE-E-ECCEEEEEEEcCCCc
Confidence 99999998765333456788888774 678764322222211 123456789865 4 4789999998754
Q ss_pred --CCccEEEEEEeCC-CCCcEEc
Q 014220 207 --NRKGLAILYRSKD-FVHWIKA 226 (428)
Q Consensus 207 --~~~G~i~ly~S~D-l~~W~~~ 226 (428)
...-.+.+++|++ +-.|+..
T Consensus 202 ~~~~~y~~~~~~~~~~~g~~~~~ 224 (286)
T cd08772 202 RVDSTYSIGYARSESDTGPYVPK 224 (286)
T ss_pred CCCCCcceEEEEccCCCCCcccC
Confidence 1233566777765 3456543
No 51
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.46 E-value=1.9e-06 Score=84.07 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=71.9
Q ss_pred ccCCeEEEECCCCeEEEEEeeecC---------CccEEEEEEeCCCCCcEEcccccccCC--------------CCCeee
Q 014220 184 FRDPTTAWLGPDKRWRVIIGSKIN---------RKGLAILYRSKDFVHWIKAKHPLHSVK--------------GTGMWE 240 (428)
Q Consensus 184 ~RDP~V~~~~~~g~y~Mv~ga~~~---------~~G~i~ly~S~Dl~~W~~~~~~l~~~~--------------~~~~wE 240 (428)
+|||+|+ ++.+|.|||+..+... ..+.|.+|+|+||++|+..+..+.... .....+
T Consensus 2 ~rDP~v~-~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~W 80 (269)
T cd08986 2 IRDTYVT-LGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVW 80 (269)
T ss_pred CcCCeEE-ecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCcC
Confidence 7999975 4457788888775431 134688999999999998775442211 123566
Q ss_pred cCceEEeccCCCCCccccCCCCCceeEEEEeeCCC--CeeeEEEEEeeCCCCcccCCCCCccCCCccccccCCCcccceE
Q 014220 241 CPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDT--KHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGKYYASKTF 318 (428)
Q Consensus 241 CPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~--~~~~Y~vG~~d~~~~~f~p~~~~~~~~~~~~lD~G~fYA~qtf 318 (428)
+|+++.++ | +|+|.+|.... ......+..-+...+.|+..... ..+ ..-.-+..|
T Consensus 81 AP~v~~~~--g-------------~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~------~~~--~~~iD~~~f 137 (269)
T cd08986 81 APELHYIK--G-------------RWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGN------KPL--FPGIDPSLF 137 (269)
T ss_pred CceEEEEC--C-------------EEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCC------CCC--CCccCCceE
Confidence 99999987 5 88888876531 12223333323223445422110 000 012346678
Q ss_pred eeCCCCcEEEE
Q 014220 319 FDGAKNRRVLW 329 (428)
Q Consensus 319 ~d~~~gr~il~ 329 (428)
.|. +|+.+|+
T Consensus 138 ~D~-DG~~Yl~ 147 (269)
T cd08986 138 EDD-DGKVYLV 147 (269)
T ss_pred EcC-CCCEEEE
Confidence 875 6888776
No 52
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.38 E-value=5.6e-06 Score=81.83 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCccCCeEEEECCCCeEEEEEeeecCC----ccEEEEEEeCCCCCcEEcccccccCC---CCCeeecCceEEeccCCCCC
Q 014220 182 SSFRDPTTAWLGPDKRWRVIIGSKINR----KGLAILYRSKDFVHWIKAKHPLHSVK---GTGMWECPDFFPVSTYGLNG 254 (428)
Q Consensus 182 ~~~RDP~V~~~~~~g~y~Mv~ga~~~~----~G~i~ly~S~Dl~~W~~~~~~l~~~~---~~~~wECPdlf~l~~~g~~~ 254 (428)
..+|||+|++.+++|.|||+..+.... ...|.+|+|+||++|+..+..+.... ......+|++++.+ |
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~--G--- 78 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHEYK--G--- 78 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeeeeC--C---
Confidence 458999988765689999998765321 12478999999999998775443221 12457899999886 5
Q ss_pred ccccCCCCCceeEEEEeeC
Q 014220 255 LDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 255 ~~~s~~~~~~~~vl~~s~~ 273 (428)
+|+|.+|..
T Consensus 79 ----------~yyly~s~~ 87 (291)
T cd08981 79 ----------RYYMFATFH 87 (291)
T ss_pred ----------EEEEEEEec
Confidence 888887764
No 53
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=98.27 E-value=1.4e-05 Score=77.92 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=51.6
Q ss_pred CccCCeEEEECCCCeEEEEEeeecCCccEEEEEEeCCCCCcEEcccccccC---------CCCCeeecCceEEeccCCCC
Q 014220 183 SFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSV---------KGTGMWECPDFFPVSTYGLN 253 (428)
Q Consensus 183 ~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~~l~~~---------~~~~~wECPdlf~l~~~g~~ 253 (428)
.+.||.|+. .++.|||+.++..... .+.+++|+||.+|+..+..+... ....+| +|+++.++ |
T Consensus 7 ~~~DP~ii~--~~~~yY~~~t~~~~~~-g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~W-AP~v~~~~--G-- 78 (269)
T cd08989 7 DNPDPSIIR--AGDDYYMASSTFEWFP-GVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIW-APCLSYYD--G-- 78 (269)
T ss_pred CCCCCcEEE--ECCeEEEEECccccCC-CcEEEECCccCCCEEccccccCccccccccCCCCCcEE-cceEEEEC--C--
Confidence 357999764 3788999986543222 37899999999999987544321 123466 99999987 5
Q ss_pred CccccCCCCCceeEEEEeeC
Q 014220 254 GLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 254 ~~~~s~~~~~~~~vl~~s~~ 273 (428)
+|+|.++..
T Consensus 79 -----------~yy~yy~~~ 87 (269)
T cd08989 79 -----------KFWLIYTAV 87 (269)
T ss_pred -----------EEEEEEecc
Confidence 888888764
No 54
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.23 E-value=2.1e-05 Score=77.57 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=77.6
Q ss_pred EcCCCceEEEEcccCCC---CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEE
Q 014220 125 ILPGEKPAIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVI 201 (428)
Q Consensus 125 ~~~dg~~~l~YTg~~~~---~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv 201 (428)
+..+|+++|||+.+... +....++|+|+| |.||++.+ +++.++ ...+....-.+.++.. .+|+++|+
T Consensus 10 ~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~D-----lv~W~~~~--~al~p~--~~~d~~g~~sGsav~~-~~g~~~~~ 79 (298)
T cd08996 10 VYFNGKYHLFYQYNPFGPVWGNMHWGHATSKD-----LVHWEHLP--VALAPD--DPYDSGGCFSGSAVVD-DNGKLVLF 79 (298)
T ss_pred eEECCEEEEEEcCCCCCCCCCCcEEEEEEecC-----ccceeECC--cccCCC--CcccCCeEEeCeEEEc-CCCcEEEE
Confidence 33589999999976432 345678899988 58999863 445443 2334455667886643 44899999
Q ss_pred Eeeec----CCccEEEEEEeC-CCCCcEEccc-cccc--CCCCCeeecCceEEec
Q 014220 202 IGSKI----NRKGLAILYRSK-DFVHWIKAKH-PLHS--VKGTGMWECPDFFPVS 248 (428)
Q Consensus 202 ~ga~~----~~~G~i~ly~S~-Dl~~W~~~~~-~l~~--~~~~~~wECPdlf~l~ 248 (428)
+.+.. .....+.++.|+ |+.+|+..+. ++.. ......++-|.+|+.+
T Consensus 80 YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~ 134 (298)
T cd08996 80 YTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD 134 (298)
T ss_pred EeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC
Confidence 98764 234467788887 8999998653 3321 2234468899999987
No 55
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=98.23 E-value=2.4e-05 Score=76.93 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=55.7
Q ss_pred CCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEEEEeCCCCCcEEcccccccCCCCCeeecCceEE
Q 014220 167 KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFP 246 (428)
Q Consensus 167 ~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~~l~~~~~~~~wECPdlf~ 246 (428)
.||||.. .+.||.|+. .++.|||+.++.. ..+.|.+|+|+||.+|+..+..+. .....+| +|++++
T Consensus 7 ~nPv~~~---------~~~DP~i~~--~~~~yY~~~t~~~-~~~gi~i~~S~DL~~W~~~g~~~~-~~~~~~W-AP~i~~ 72 (280)
T cd09002 7 RNPILAG---------DYPDPSILR--DGEDYYMTHSSFK-YTPGLVIWHSRDLVNWTPVGPALP-EYEGDVW-APDLCK 72 (280)
T ss_pred eCCccCC---------CCCCCEEEE--ECCEEEEEEcchh-cCCCEEEEECCCcCCceEcccccc-CCCCCEE-cCeeEE
Confidence 4788842 257999764 3689999765422 233588999999999998764342 2345688 899999
Q ss_pred eccCCCCCccccCCCCCceeEEEEeeC
Q 014220 247 VSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (428)
Q Consensus 247 l~~~g~~~~~~s~~~~~~~~vl~~s~~ 273 (428)
.+ | |++|.++..
T Consensus 73 ~~--g-------------kyy~yys~~ 84 (280)
T cd09002 73 YD--G-------------RYYIYFPAI 84 (280)
T ss_pred EC--C-------------EEEEEEEee
Confidence 87 5 888887764
No 56
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.22 E-value=4.2e-05 Score=75.19 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=92.4
Q ss_pred CCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCC--CCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceE
Q 014220 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDL--INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (428)
Q Consensus 55 ~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dl--v~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~ 132 (428)
.+-+..|. +++.+|+|||||..+..+. .....++|+|+|+ -.|+..++++.+....+...+..++++.++||+++
T Consensus 55 ~~~~wAP~-v~~~~g~yyl~ys~~~~~~--~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Y 131 (288)
T cd08998 55 SGNLWAPD-VIYLNGKYYLYYSVSTFGS--NRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLW 131 (288)
T ss_pred CCCccCCe-EEEECCEEEEEEEEEeCCC--CceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEE
Confidence 45577885 7789999999998765331 3457899999999 69998876665543212334567888887789999
Q ss_pred EEEcccCCCCcceEEEE-EEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-C---
Q 014220 133 IFYTGIDPHNRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-N--- 207 (428)
Q Consensus 133 l~YTg~~~~~~~~q~lA-~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-~--- 207 (428)
|+|.+... .+.++ .+.|.+.+ ..+... ...++..+ . .......|+++ + .+|+|||++++.. .
T Consensus 132 l~~~~~~~----~i~~~~l~~~~~~~--~~~~~~-~~~i~~~~--~--~~~~~Egp~~~-k-~~g~YYl~~S~~~~~~~~ 198 (288)
T cd08998 132 LSFGSFWG----GIFLVELDPKTGKP--LYPGGY-GYNIAGRP--R--GHGAIEAPYII-Y-RGGYYYLFVSYGGCCAGE 198 (288)
T ss_pred EEeeeccC----CEEEEEeCcccCCc--cCCCCc-ceEEeccC--C--CCCceeeeEEE-E-eCCEEEEEEEcchhcCCC
Confidence 99975321 12233 22221111 122100 01122211 1 11235689864 4 4799999986532 1
Q ss_pred Ccc-EEEEEEeCCCC-CcE
Q 014220 208 RKG-LAILYRSKDFV-HWI 224 (428)
Q Consensus 208 ~~G-~i~ly~S~Dl~-~W~ 224 (428)
..+ ++.+++|+++. -|+
T Consensus 199 ~~~y~v~~~~s~~~~GP~~ 217 (288)
T cd08998 199 DSTYNIRVGRSKSITGPYV 217 (288)
T ss_pred CCceEEEEEEcCCCCCCcC
Confidence 112 57899998864 365
No 57
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=98.07 E-value=0.00012 Score=73.79 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=92.4
Q ss_pred ECCEEEEEEeeCCCC---CCCCCcEEEEEEeCCC----CCCccCCCCCCCCCC-cc-------------CCCeEeeeEEE
Q 014220 67 YKGIYHLFYQYNPKG---AVWGNIVWAHSTSKDL----INWIPHDPAIYPSQQ-SD-------------INGCWSGSATI 125 (428)
Q Consensus 67 ~~G~YHlFYq~~p~~---~~~g~~~Wgha~S~Dl----v~W~~~~~al~P~~~-~D-------------~~gv~SGsav~ 125 (428)
.+|++||||..+-.. ........++++|+|+ ..|+.+...+.+++. |+ ....-.+.++.
T Consensus 80 ~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~ 159 (349)
T cd08997 80 DDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFE 159 (349)
T ss_pred CCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEe
Confidence 469999999987421 1122467999999998 455545445555532 21 12234567776
Q ss_pred cC-CCceEEEEcccCCCC---------------------------cceEEEEEEcCCCCCccceeEecCCCceecCCCCC
Q 014220 126 LP-GEKPAIFYTGIDPHN---------------------------RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMN 177 (428)
Q Consensus 126 ~~-dg~~~l~YTg~~~~~---------------------------~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~ 177 (428)
++ +|+++|+++++.... .-.+++|++.+. +|.+|+-. .|++.+.
T Consensus 160 d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~---dl~~W~~~--~PL~~a~--- 231 (349)
T cd08997 160 DPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKND---DLTEWKLL--PPLLEAN--- 231 (349)
T ss_pred cCCCCcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCC---CCCCcEEc--CccccCC---
Confidence 54 588999999875421 123567776542 36789975 4887654
Q ss_pred CCCCCCccCCeEEEECCCCeEEEEEeeecC-------CccEEEEEEeCCCC-CcE
Q 014220 178 QINTSSFRDPTTAWLGPDKRWRVIIGSKIN-------RKGLAILYRSKDFV-HWI 224 (428)
Q Consensus 178 ~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~-------~~G~i~ly~S~Dl~-~W~ 224 (428)
. -...+..|.++ + .+|+|||+..++.. +...+..|.|+++. .|+
T Consensus 232 ~-v~d~~E~P~v~-~-~~gk~yL~~s~~~~~~~~~~~~~~~~~g~vsdsl~GP~~ 283 (349)
T cd08997 232 G-VNDELERPHVV-F-HNGKYYLFTISHRSTFAPGLSGPDGLYGFVSDSLRGPYK 283 (349)
T ss_pred C-cCCceEcceEE-E-ECCEEEEEEeCCcCccccccCCCCcEEEEEeCCCCCCCc
Confidence 2 13458899964 4 48999999875542 11245667888875 354
No 58
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.05 E-value=0.00041 Score=67.65 Aligned_cols=142 Identities=8% Similarity=0.026 Sum_probs=86.7
Q ss_pred CccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCcc-CC-CCCCCCCCccCCCeEeeeEEEcCCCceEE
Q 014220 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIP-HD-PAIYPSQQSDINGCWSGSATILPGEKPAI 133 (428)
Q Consensus 57 w~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~-~~-~al~P~~~~D~~gv~SGsav~~~dg~~~l 133 (428)
-+.-|. +++.+|+|+|||..+ ...++|+|+|.. .|+. .+ +.+.+.. .......++++.++||+++|
T Consensus 65 ~~wAP~-v~~~~g~yy~yys~~--------~~i~va~s~~p~gp~~~~~~~p~~~~~~--~~~~~iDp~vf~d~dG~~yl 133 (275)
T cd09004 65 AAWAPS-VIERNGKYYFYFSAN--------GGIGVAVADSPLGPFKDALGKPLIDKFT--FGAQPIDPDVFIDDDGQAYL 133 (275)
T ss_pred CcCCCe-EEEECCEEEEEEEcC--------CcEEEEEeCCCCCCCCCCCCCccccCCc--CCCCccCCCeEECCCCCEEE
Confidence 355674 788999999999865 358899999965 7887 33 3343321 12345568888877899999
Q ss_pred EEcccCCCCcceEEE-EEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-C-Ccc
Q 014220 134 FYTGIDPHNRQVQNL-AVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-N-RKG 210 (428)
Q Consensus 134 ~YTg~~~~~~~~q~l-A~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-~-~~G 210 (428)
+|.+.. ...+ ..+.| +.+|+.. ..++... . ...+.-|.++ + .+|+|||++.+.. . ..-
T Consensus 134 ~~~~~~-----~~~i~~l~~d-----~~~~~~~--~~~~~~~--~---~~~~EgP~i~-k-~~G~yyl~ys~~~~~~~~Y 194 (275)
T cd09004 134 YWGGWG-----HCNVAKLNED-----MISFDGE--RDGSEIT--P---KNYFEGPFMF-K-RNGIYYLMWSEGGWTDPDY 194 (275)
T ss_pred EEcCcC-----CEEEEEECCC-----cccccCc--ceeeecc--C---CCceecceEE-E-ECCEEEEEEECCCCCCCCc
Confidence 997531 1223 33343 2455432 1121111 1 1235688854 5 4789999987754 1 222
Q ss_pred EEEEEEeCCCCC-cEEccc
Q 014220 211 LAILYRSKDFVH-WIKAKH 228 (428)
Q Consensus 211 ~i~ly~S~Dl~~-W~~~~~ 228 (428)
++.+++|+++.. |+....
T Consensus 195 ~~~ya~s~~~~GP~~~~~~ 213 (275)
T cd09004 195 HVAYAMADSPLGPFERPGN 213 (275)
T ss_pred eEEEEEcCCCCCCcccCCc
Confidence 577788888653 776543
No 59
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=9.5e-05 Score=77.35 Aligned_cols=142 Identities=22% Similarity=0.322 Sum_probs=84.2
Q ss_pred EEEEEeCCCCCCccCCCCCCCCCC-------ccCCCeEeeeEEEcCCCceEEEEcccCCCC---cceEEEEEEcCCCCCc
Q 014220 89 WAHSTSKDLINWIPHDPAIYPSQQ-------SDINGCWSGSATILPGEKPAIFYTGIDPHN---RQVQNLAVPKNLSDPY 158 (428)
Q Consensus 89 Wgha~S~Dlv~W~~~~~al~P~~~-------~D~~gv~SGsav~~~dg~~~l~YTg~~~~~---~~~q~lA~S~D~~d~~ 158 (428)
-.-+.|+||+||+.....|.+... -+..|||.+++. ..||+++|+||.+.... +...+..++....+
T Consensus 55 l~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~~~S~giWAPdl~-y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~-- 131 (549)
T COG3507 55 LAIHHSRDLVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAPDLS-YHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESID-- 131 (549)
T ss_pred eeeeccccccCcEEecccccCcchhhhhcccCCCCceecccee-cCCCcEEEEEecccccCCcccccccEEEEecCCC--
Confidence 456789999999998766666532 245789999987 58999999998765422 22223333332211
Q ss_pred cceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCC------ccEEEEEEeC---CCCCcEEcccc
Q 014220 159 LREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR------KGLAILYRSK---DFVHWIKAKHP 229 (428)
Q Consensus 159 l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~------~G~i~ly~S~---Dl~~W~~~~~~ 229 (428)
-.|.. |+..+. ..--||.++ .+++|+-||+.++...+ .+.++-..++ .+..+.+ + .
T Consensus 132 -G~WsD----pi~l~~-------~~~iDPslf-~D~dGr~wlv~~~w~~~~~~~~~~~i~l~~~~~~~~~l~g~~~-~-~ 196 (549)
T COG3507 132 -GPWSD----PIKLNG-------SNAIDPSLF-FDKDGRKWLVNGSWDGGIFMHSFAGIILQEYDKTTQKLVGQGY-K-I 196 (549)
T ss_pred -CCccc----ceecCC-------cCccCCcee-ecCCCCEEEEecccCCCcccccccceeeeeccccccccCCccc-e-e
Confidence 24653 333221 123599964 56899999999876532 1232222221 1333322 1 1
Q ss_pred cccCCCCCeeecCceEEec
Q 014220 230 LHSVKGTGMWECPDFFPVS 248 (428)
Q Consensus 230 l~~~~~~~~wECPdlf~l~ 248 (428)
+..+......|-|-+++.+
T Consensus 197 ~~~G~~~~~~EGPhl~k~~ 215 (549)
T COG3507 197 IFDGGNGGLTEGPHLYKKT 215 (549)
T ss_pred EeccCCCccccCceeeccC
Confidence 2333344578999888876
No 60
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=5.6e-05 Score=73.69 Aligned_cols=102 Identities=14% Similarity=0.241 Sum_probs=79.3
Q ss_pred CeEeeeEEEcCCCceEEEEccc-----CCCCcceEEEEEEcCCCCCccce-eEecCCCceecC-CCCCCCCCCCccCCeE
Q 014220 117 GCWSGSATILPGEKPAIFYTGI-----DPHNRQVQNLAVPKNLSDPYLRE-WVKSPKNPLMAP-DAMNQINTSSFRDPTT 189 (428)
Q Consensus 117 gv~SGsav~~~dg~~~l~YTg~-----~~~~~~~q~lA~S~D~~d~~l~~-w~k~~~nPvi~~-~~~~~~~~~~~RDP~V 189 (428)
++|.++++. .+++++|+|... ..+......+|.|+|+. + |++. .+|++.| . ...+.....||.|
T Consensus 30 ~vFNpav~~-~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dgi-----~~~~~e-~ep~~~P~~--~~~e~~G~EDPRv 100 (314)
T COG2152 30 SVFNPAVVL-VGGELLLLYRVVEGYYEDHSSISHLRIARSDDGI-----GEFEIE-PEPTLWPAN--YPYEIYGIEDPRV 100 (314)
T ss_pred EEecceeEE-ECCEEEEEEEEeccccccCccceEEEEEecccCC-----CceecC-CcceEecCC--CchhhhcccCceE
Confidence 799999887 489999999873 22356677899999873 4 8886 4798876 3 2345667899997
Q ss_pred EEECCCCeEEEEEeeecCCccEEEEEEeCCCCCcEEcccc
Q 014220 190 AWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHP 229 (428)
Q Consensus 190 ~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~~W~~~~~~ 229 (428)
+.. +++|+|.+.+..+.+.+..++.++|+.+|++.+..
T Consensus 101 t~I--~~~y~mtYTa~s~~g~~~~la~t~~f~n~~rig~i 138 (314)
T COG2152 101 TKI--GGRYYMTYTAYSDKGPRLALAVTKDFLNWERIGAI 138 (314)
T ss_pred EEE--CCEEEEEEEecCCCCcccchhhhhhhhhhhhcccc
Confidence 654 79999999998765667789999999999988743
No 61
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=97.92 E-value=0.00013 Score=71.15 Aligned_cols=150 Identities=12% Similarity=0.064 Sum_probs=89.8
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEEccc
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGI 138 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg~ 138 (428)
-|. +++.+|+|||||..... -.....+.|+|++.. .|+.....+.+ ...+..+++++++||+.+|+|.+.
T Consensus 69 AP~-i~~~~g~yy~y~~~~~~---~~~~~~~va~a~~~~Gp~~~~~~~~~~-----~~~~iD~~vf~d~dG~~Yl~~~~~ 139 (286)
T PF04616_consen 69 APE-IHYINGKYYMYYSDSGG---DAGSGIGVATADSPDGPWTDPGKIPIP-----GGNSIDPSVFVDDDGKYYLYYGSW 139 (286)
T ss_dssp EEE-EEEETTEEEEEEEEEST---STTEEEEEEEESSTTS-EEEEEEEEEE-----SSSSSSEEEEEETTSEEEEEEEES
T ss_pred CCe-EEEcCCeEEEEEEccCC---CCCcceeEEEeCCcccccccccceeec-----cccccCceEEEecCCCcEEeCccc
Confidence 353 67889999999992211 123568899999986 89887543322 233455888887779999999886
Q ss_pred CCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec-CCccEEEEEE
Q 014220 139 DPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-NRKGLAILYR 216 (428)
Q Consensus 139 ~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-~~~G~i~ly~ 216 (428)
... ..+.+.++...+. ..++.......+.... .........-|+++ + .+|+|||++.+.. ...-.+.+++
T Consensus 140 ~~~~~~~~i~~~~l~~d----~~~~~~~~~~~~~~~~--~~~~~~~~Egp~~~-k-~~g~yYl~~s~~~~~~~y~v~~~~ 211 (286)
T PF04616_consen 140 DNGDPGGGIYIAELDPD----GTSLTGEPVVVIFPGD--EGWDGGVVEGPFVF-K-HGGKYYLFYSAGGTGSPYQVGYAR 211 (286)
T ss_dssp TTTSSEEEEEEEEEETT----TSSEEEEECEEEEEES--GSSTTTBEEEEEEE-E-ETTEEEEEEEESGSSTTTEEEEEE
T ss_pred CCCccceeEEeecccCc----cccccCcccccccccc--cccCCccccceEEE-E-cCCCEEEEEeccCCCCCceEEEee
Confidence 532 2334444433322 1334432211222211 11223345678864 4 4889999998654 2224677899
Q ss_pred eCCCCC-cEEc
Q 014220 217 SKDFVH-WIKA 226 (428)
Q Consensus 217 S~Dl~~-W~~~ 226 (428)
|+++.. |+..
T Consensus 212 s~~~~gp~~~~ 222 (286)
T PF04616_consen 212 SDSPLGPWEWK 222 (286)
T ss_dssp ESSTTSGGEET
T ss_pred ccCCCCceeec
Confidence 999876 4543
No 62
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.84 E-value=0.0017 Score=63.35 Aligned_cols=148 Identities=8% Similarity=0.058 Sum_probs=89.2
Q ss_pred CCCccCCcceEEE--CCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccCCCCCCCCCCccCCCeEeeeEEEcCCCce
Q 014220 55 KNWINDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKP 131 (428)
Q Consensus 55 ~gw~nDPng~~~~--~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~ 131 (428)
.+.+.-|. ++|. +|+|||||...... .+....++|+|++.. .|+.++..+.++ .....+++++++||+.
T Consensus 62 ~~~~waP~-v~y~~~~g~Y~m~~~~~~~~--~~~~~igvA~Sd~p~Gpf~~~~~~~~~~-----~~~~Dp~vf~DdDG~~ 133 (265)
T cd08985 62 GRIIERPK-VIYNAKTGKYVMWMHIDSSD--YSDARVGVATSDTPTGPYTYLGSFRPLG-----YQSRDFGLFVDDDGTA 133 (265)
T ss_pred CcEEECCe-EEEeCCCCEEEEEEEeCCCC--CcceeEEEEEeCCCCCCCEECCccCCCC-----CCccCCceEEcCCCCE
Confidence 33456664 5664 69999999987522 245689999999875 688765433211 2345688888888999
Q ss_pred EEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC-Ccc
Q 014220 132 AIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN-RKG 210 (428)
Q Consensus 132 ~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~-~~G 210 (428)
+|+|.+.. .....++.-++. +..+ .+.+..... ......|.+ ++ .+|.|||+...... ...
T Consensus 134 Yl~~~~~~---~~~i~i~~L~~d----~~~~---~~~~~~~~~------~~~~EaP~i-~K-~~g~YYL~~S~~t~~~~~ 195 (265)
T cd08985 134 YLLYSDRD---NSDLYIYRLTDD----YLSV---TGEVTTVFV------GAGREAPAI-FK-RNGKYYLLTSGLTGWNPN 195 (265)
T ss_pred EEEEecCC---CCceEEEEeCCC----cccc---cceEEEccC------CCccccceE-EE-ECCEEEEEEccCCCccCC
Confidence 99998642 122344432221 2223 223332111 134578985 55 57999999876531 122
Q ss_pred EEEEEEeCCCC-CcEEccc
Q 014220 211 LAILYRSKDFV-HWIKAKH 228 (428)
Q Consensus 211 ~i~ly~S~Dl~-~W~~~~~ 228 (428)
.+..++|+++. .|+..+.
T Consensus 196 ~~~y~~s~s~~GP~~~~~~ 214 (265)
T cd08985 196 DARYATATSILGPWTDLGN 214 (265)
T ss_pred ceEEEEecCCCCCccccCc
Confidence 46678888765 5776553
No 63
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=97.73 E-value=0.00032 Score=73.50 Aligned_cols=135 Identities=10% Similarity=0.065 Sum_probs=80.1
Q ss_pred CCcceEEECCEEEEEEeeCCCCCCCC-CcEEEEEEeCCCCCCccCC-CCCCCCCCccCCCeEeeeEEEcCCCceEEEEcc
Q 014220 60 DPNGVMIYKGIYHLFYQYNPKGAVWG-NIVWAHSTSKDLINWIPHD-PAIYPSQQSDINGCWSGSATILPGEKPAIFYTG 137 (428)
Q Consensus 60 DPng~~~~~G~YHlFYq~~p~~~~~g-~~~Wgha~S~Dlv~W~~~~-~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg 137 (428)
.++ ++..+|++||||..+.....+. ...-.+|+|+|+.+|+..+ ++|.+.......+.-.+.|+. .+|+++|++.+
T Consensus 88 sGs-av~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg~~~~k~~~pvi~~~~~~~~~~fRDP~V~~-~~g~~~M~~g~ 165 (445)
T TIGR01322 88 SGS-AVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDDDGHFEKFGIVVIELPPAGYTAHFRDPKVWK-HNGHWYMVIGA 165 (445)
T ss_pred ECe-EEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCCCCeEEECCCceEeCCCCCCcCcCCCCcEEe-ECCEEEEEEEE
Confidence 443 3457999999999765322222 2335689999999999876 456543221112334566654 57999999877
Q ss_pred cCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCC-CCCCCCccCCeEEEECCCCeEEEEEeee
Q 014220 138 IDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMN-QINTSSFRDPTTAWLGPDKRWRVIIGSK 205 (428)
Q Consensus 138 ~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~-~~~~~~~RDP~V~~~~~~g~y~Mv~ga~ 205 (428)
..........+..|.| |++|+.. .++..+...+ +.....|.=|-+ +. -+++|+|+++..
T Consensus 166 ~~~~~~g~i~ly~S~D-----l~~W~~~--g~~~~~~~~~~~~~g~~~ECPdl-f~-l~~k~vL~~s~~ 225 (445)
T TIGR01322 166 QTETEKGSILLYRSKD-----LKNWTFV--GEILGDGQNGLDDRGYMWECPDL-FS-LDGQDVLLFSPQ 225 (445)
T ss_pred ecCCCceEEEEEECCC-----cccCeEe--cccccccccccCCccceEECCeE-EE-ECCcEEEEEecc
Confidence 5433333445666655 5899975 3554322000 111123556764 44 478999999754
No 64
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=97.71 E-value=0.0041 Score=58.95 Aligned_cols=188 Identities=14% Similarity=0.235 Sum_probs=104.4
Q ss_pred ccCCCCC--ccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCCCCCCCccCCCeEeeeEEE-cC
Q 014220 51 FQPPKNW--INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATI-LP 127 (428)
Q Consensus 51 ~~p~~gw--~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~D~~gv~SGsav~-~~ 127 (428)
..|+.|| +.||. +++++|+||+|....-.+.. |+...=..+-+|.+..-| +....+. +...+.++. .+
T Consensus 16 ~~Pk~g~~slKD~T-~V~ynGk~~VyAtt~d~~~~-----y~sm~f~~Ftdws~~~sA--~q~~m~~-~~vAP~vFYFaP 86 (271)
T PF03664_consen 16 AQPKSGWVSLKDFT-IVPYNGKHHVYATTADTGGG-----YGSMNFGPFTDWSQMASA--SQNYMDQ-SAVAPQVFYFAP 86 (271)
T ss_pred ccCCCCceeccCce-EEeECCEEEEEEEeccCCCc-----cceEeeeccCCHHHhhcc--ccccCCc-ccccceEEEecC
Confidence 4577788 58994 88999999999987644443 554444466788876543 2221221 222333332 25
Q ss_pred CCceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecC
Q 014220 128 GEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN 207 (428)
Q Consensus 128 dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~ 207 (428)
.+.++|.|.--.. .-...++.|.+++ ..|... .|++.... .+ .....-|..|+-. ..+ -||+.+..
T Consensus 87 k~~W~L~yQwg~~----~fsY~Ts~Dptnp--ngWSap--q~lf~g~i-~~-~~~g~iD~~vI~D-~~n-~yLFfa~D-- 152 (271)
T PF03664_consen 87 KNIWYLAYQWGPA----AFSYSTSSDPTNP--NGWSAP--QPLFSGSI-SG-SGTGPIDQWVICD-DTN-MYLFFAGD-- 152 (271)
T ss_pred CcEEEEEEecCCC----cceeecCCCCCCC--ccCCCC--cccccccc-cC-CCCCceeeEEEec-CCc-eEEEEcCC--
Confidence 7788888863211 1123355666665 568763 46653220 11 2244679998754 333 34444432
Q ss_pred CccEEEEEEeCC-CCCc----EEcccccccCCCCCeeecCceEEeccCCCCCccccCCCCCceeEEEEeeCCCCe
Q 014220 208 RKGLAILYRSKD-FVHW----IKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKH 277 (428)
Q Consensus 208 ~~G~i~ly~S~D-l~~W----~~~~~~l~~~~~~~~wECPdlf~l~~~g~~~~~~s~~~~~~~~vl~~s~~~~~~ 277 (428)
.| .||+|.- +-+. .-....+.+......+|.++++++. | +.+++|++.+.+..+
T Consensus 153 -nG--kiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~--G-----------~~~YLmiVEaiGs~g 211 (271)
T PF03664_consen 153 -NG--KIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVK--G-----------QNQYLMIVEAIGSDG 211 (271)
T ss_pred -CC--cEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEc--C-----------CceEEEEEEEecCCC
Confidence 24 4888743 2222 1011122222345589999999997 4 247888877654333
No 65
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=97.69 E-value=0.0021 Score=63.05 Aligned_cols=152 Identities=10% Similarity=0.175 Sum_probs=86.2
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-C-----CccCCCCCCCCCCccCCCeEeeeEEEcCCC
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-N-----WIPHDPAIYPSQQSDINGCWSGSATILPGE 129 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~-----W~~~~~al~P~~~~D~~gv~SGsav~~~dg 129 (428)
+-+.-|. +++++|+|||||.....+. ....+|.|+|++.. - |+...+.+.+... +......+++++++||
T Consensus 55 ~~~WAP~-v~~~~G~yylyys~~~~~~--~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~-~~~~~iDp~~f~DdDG 130 (279)
T cd08988 55 GHLWAPD-IYQHNGKFYLYYSVSAFGS--NTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDAS-DNYNAIDPAIIFDQHG 130 (279)
T ss_pred CCEecce-EEEECCEEEEEEEeccCCC--CCceEEEEEcCCCCCCCcCcCccccCceEecCCC-CCCCccCCceEEcCCC
Confidence 3466774 7889999999998765432 24578999999864 3 4433343333221 1234567888888889
Q ss_pred ceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecC-CCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec--
Q 014220 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSP-KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-- 206 (428)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~-~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~-- 206 (428)
+++|+|.... .+ ...+-++.|... ..... ...++..+ . +.....-|++ ++ .+|+|||++++..
T Consensus 131 ~~Yl~~g~~~-~g--i~~~eL~~d~~~-----~~~~~~~~~i~~~~--~--~~~~~Egp~i-~k-~~g~YYl~~S~g~~~ 196 (279)
T cd08988 131 QPWLSFGSFW-GG--IKLFELDKDTMK-----PAEPGELHSIAGRE--R--SSAAIEAPFI-LY-RGDYYYLFVSFGLCC 196 (279)
T ss_pred CEEEEecccC-CC--EEEEEECcccCC-----ccCCCcceEEeccC--C--CCCceEeeEE-EE-cCCeEEEEEEcCccc
Confidence 9999996532 11 122233333211 10000 01122221 1 1123567885 45 4799999886542
Q ss_pred ---CCccEEEEEEeCCCC-CcEE
Q 014220 207 ---NRKGLAILYRSKDFV-HWIK 225 (428)
Q Consensus 207 ---~~~G~i~ly~S~Dl~-~W~~ 225 (428)
+..-.+.+++|+++. -|+.
T Consensus 197 ~~~~~~y~v~~arS~~~~GPy~~ 219 (279)
T cd08988 197 RGGDSTYKIAVGRSKNITGPYLD 219 (279)
T ss_pred CCCCCCeEEEEEEeCCCCCCCCC
Confidence 122368899999874 2443
No 66
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=97.65 E-value=0.0053 Score=61.29 Aligned_cols=147 Identities=10% Similarity=0.093 Sum_probs=84.8
Q ss_pred ccCCcceEEEC----CEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccC-CC-CCCCCC-Ccc-CCCeEeeeEEEcCC
Q 014220 58 INDPNGVMIYK----GIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPH-DP-AIYPSQ-QSD-INGCWSGSATILPG 128 (428)
Q Consensus 58 ~nDPng~~~~~----G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~-~~-al~P~~-~~D-~~gv~SGsav~~~d 128 (428)
+.-|. +++.+ |+|+|||... ....+.|+|++.. .|+++ +. .+.+.. ..+ ......+++++++|
T Consensus 78 ~WAP~-v~~~~~~~~gkyylyy~~~-------~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdD 149 (311)
T cd09003 78 SWAPS-IAVKKINGKGKFYLYFANG-------GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDD 149 (311)
T ss_pred cCCCc-eEEeccCCCCEEEEEEecC-------CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCC
Confidence 44663 67787 9999999632 2358999999965 89975 32 222211 111 11245788888878
Q ss_pred CceEEEEcccCC----CCcceEEEEEEc-CCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEe
Q 014220 129 EKPAIFYTGIDP----HNRQVQNLAVPK-NLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (428)
Q Consensus 129 g~~~l~YTg~~~----~~~~~q~lA~S~-D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~g 203 (428)
|+.+|+|.+... ...+.+.+|.-+ |. .+ ..+.++.-.. + ..+.-|.+ ++ .+|+|||+++
T Consensus 150 G~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~-----~~---~~g~~~~i~~--~----~~~Egp~~-~K-~~G~YYL~ys 213 (311)
T cd09003 150 GQGYLYFGGGVPGGRWANPNTARVIKLGDDM-----IS---VDGSAVTIDA--P----YFFEASGL-HK-INGTYYYSYC 213 (311)
T ss_pred CCEEEEECCccCCCccccCCCEEEEEeCCCc-----ee---ccCCceEccC--C----CceEeeeE-EE-ECCEEEEEEe
Confidence 999999975321 111233444322 21 22 2222332111 1 23567885 45 5899999987
Q ss_pred eec-------CCccEEEEEEeCCCC-CcEEccc
Q 014220 204 SKI-------NRKGLAILYRSKDFV-HWIKAKH 228 (428)
Q Consensus 204 a~~-------~~~G~i~ly~S~Dl~-~W~~~~~ 228 (428)
+.- .....+.+++|++.. .|+..+.
T Consensus 214 ~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~ 246 (311)
T cd09003 214 TNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGI 246 (311)
T ss_pred CCCCccCCCCCCceeEEEEEcCCCCCCcccCCE
Confidence 541 224467777887754 4876543
No 67
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.61 E-value=0.0028 Score=61.79 Aligned_cols=135 Identities=12% Similarity=0.029 Sum_probs=81.2
Q ss_pred CccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC-CCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEE
Q 014220 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFY 135 (428)
Q Consensus 57 w~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~Y 135 (428)
-+.-|. +++.+|+|||||-.+. ...+.|+|++.. .|++.+... ....+++++++||+.+|+|
T Consensus 75 ~~WAP~-v~~~~gkyy~yys~~~-------~~~~v~~a~~p~Gpw~~~~~~~---------~~iDp~~f~D~dG~~Yl~~ 137 (269)
T cd09001 75 GQWAPS-LRYHNGTFYVFFCTNT-------GGTYIYTADDPEGPWTKTALDG---------GYHDPSLLFDDDGTAYLVY 137 (269)
T ss_pred CEECCc-eEEECCEEEEEEEecC-------CCeEEEEcCCCCCCCcCCCcCC---------CcccCceEEcCCCCEEEEe
Confidence 356774 7889999999998751 135677887754 788765422 2245778887789999999
Q ss_pred cccCCCCcceEEEE-EEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEE
Q 014220 136 TGIDPHNRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAIL 214 (428)
Q Consensus 136 Tg~~~~~~~~q~lA-~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~l 214 (428)
.+. .+.++ ++.|. ..... ....++..+ .. ......-|+++ + .+|+|||++.+.......+.+
T Consensus 138 ~~~------~i~~~~l~~d~-----~~~~~-~~~~~~~~~--~~-~~~~~Egp~i~-k-~~G~YYl~~S~~~~~~~~~~~ 200 (269)
T cd09001 138 GGG------TIRLVELSPDL-----TGVGG-KDQVIIDAG--EE-IGLGAEGSHLY-K-INGYYYIFNIAWGGGGRTQTC 200 (269)
T ss_pred CCC------cEEEEEECccc-----CCcCC-CceEEEeCC--Cc-cccccccCeEE-E-ECCEEEEEEecCCCCCceEEE
Confidence 653 23333 33332 22211 112233333 10 12345678854 5 589999999765322335678
Q ss_pred EEeCCCCC-cEE
Q 014220 215 YRSKDFVH-WIK 225 (428)
Q Consensus 215 y~S~Dl~~-W~~ 225 (428)
++|+++.. |+.
T Consensus 201 ~~s~~~~GP~~~ 212 (269)
T cd09001 201 LRSKSLTGPYES 212 (269)
T ss_pred EEeCCCCCCcCC
Confidence 89988654 543
No 68
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.59 E-value=0.004 Score=61.13 Aligned_cols=145 Identities=9% Similarity=0.034 Sum_probs=78.6
Q ss_pred CCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCC----CCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCce
Q 014220 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKD----LINWIPHDPAIYPSQQSDINGCWSGSATILPGEKP 131 (428)
Q Consensus 56 gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~D----lv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~ 131 (428)
+-+.-|. +++.+|+|||||...-.+ .......+.++|++ +-.|++.+..+.+.. .....++++.+ +|++
T Consensus 53 ~~~WAP~-i~~~~g~yylyys~~~~~-~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~----~~~iDp~~~~d-dG~~ 125 (288)
T cd08980 53 GNLWAPE-LHYIDGKWYIYFAAGDGG-GNANHRMYVLENAGADPPTGPWTFKGRLADPTD----RWAIDGTVFEH-NGQL 125 (288)
T ss_pred ccEECce-EEEECCEEEEEEEccCCC-CCcceeEEEEEeCCCCCCCCCceEeeEeccCCC----CeeeeeEEEEE-CCEE
Confidence 3455663 678999999999765432 11234456666664 568998765442221 23456788775 7999
Q ss_pred EEEEcccCCC--CcceEEEEEEcCCCCCccceeEecCCCce-ecCCCCCCCCC---CCccCCeEEEECCCCeEEEEEeee
Q 014220 132 AIFYTGIDPH--NRQVQNLAVPKNLSDPYLREWVKSPKNPL-MAPDAMNQINT---SSFRDPTTAWLGPDKRWRVIIGSK 205 (428)
Q Consensus 132 ~l~YTg~~~~--~~~~q~lA~S~D~~d~~l~~w~k~~~nPv-i~~~~~~~~~~---~~~RDP~V~~~~~~g~y~Mv~ga~ 205 (428)
+|+|.+.... ....+.++...+. .++. +.++ +..+. ..++. ....-|+++.+ +|.|||++++.
T Consensus 126 Yl~~~~~~~~~~~~~~i~~~~l~~~-----~~~~---g~~~~i~~p~-~~we~~~~~~~EgP~~~k~--~G~yYl~yS~~ 194 (288)
T cd08980 126 YFVWSGWEGRTNGNQNLYIAKMSNP-----WTLT---GPRVLISRPE-YDWERQGPGVNEGPAALKR--NGKVFLTYSAS 194 (288)
T ss_pred EEEEEccCCCCCCCccEEEEECCCC-----CccC---CcceEecCCC-CCceecCceeeECcEEEEE--CCEEEEEEECC
Confidence 9999865421 1223334433221 1222 2232 22221 11211 22457886544 69999999875
Q ss_pred cC-Cc-cEEEEEEeC
Q 014220 206 IN-RK-GLAILYRSK 218 (428)
Q Consensus 206 ~~-~~-G~i~ly~S~ 218 (428)
.- .. =++.+++|+
T Consensus 195 ~~~~~~Y~v~~a~~~ 209 (288)
T cd08980 195 GSWTPDYCLGLLTAD 209 (288)
T ss_pred CCCCCCCEEEEEEEc
Confidence 42 11 145566654
No 69
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=97.50 E-value=0.00064 Score=71.06 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=78.9
Q ss_pred eEEECCEEEEEEeeCC-CCC--CCCC-cEEEEEEeCCCCCCccC--CCCCCCCCCccCCCeEeeeEEEcCCCceEEEEcc
Q 014220 64 VMIYKGIYHLFYQYNP-KGA--VWGN-IVWAHSTSKDLINWIPH--DPAIYPSQQSDINGCWSGSATILPGEKPAIFYTG 137 (428)
Q Consensus 64 ~~~~~G~YHlFYq~~p-~~~--~~g~-~~Wgha~S~Dlv~W~~~--~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg 137 (428)
++..+|++||||..+- ... .... ..-.+|+|+|+.+|+.. .++|.+...+.....-.+.|+..++|+++|++.+
T Consensus 74 av~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~ 153 (437)
T smart00640 74 AVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGA 153 (437)
T ss_pred EEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEE
Confidence 4456888999998763 211 1122 22367889999999987 3666553322222334566665434689999887
Q ss_pred cCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCC-----eEEEEEeee
Q 014220 138 IDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDK-----RWRVIIGSK 205 (428)
Q Consensus 138 ~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g-----~y~Mv~ga~ 205 (428)
...+..-.+.++.|+| |++|+.. .++..+. .+.....|.=|-++ . -++ +|+|+++..
T Consensus 154 ~~~~~~G~i~ly~S~D-----l~~W~~~--~~~~~~~--~~~~g~~wECPdlf-~-l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 154 SDEDKTGIALLYRSTD-----LKNWTLL--GELLHSG--VGDTGGMWECPDLF-P-LPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred EecCCCeEEEEEECCC-----cccCeEC--CcccccC--CCCccceEECCcEE-E-eCCCCCceeEEEEECcC
Confidence 5544445567777776 5899875 3555331 01111346677643 3 344 899999775
No 70
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.38 E-value=0.01 Score=58.22 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=86.0
Q ss_pred CCCCccCCcceEEECCEEEEEEeeCCCCCCCCCcEEEEEEeCCC-CCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceE
Q 014220 54 PKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDL-INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (428)
Q Consensus 54 ~~gw~nDPng~~~~~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dl-v~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~ 132 (428)
..+-++-|. +++.+|+|||||...... +....+.++|+|. -.|++. . +.+. .+..++++.++||+.+
T Consensus 64 ~~~~~WAP~-v~~~~g~yy~yy~~~~~~---~~~~~~v~~s~~p~gpw~~~-~-~~~~------~~iDp~vf~d~dG~~Y 131 (288)
T cd09000 64 DSGGIWAPT-IRYHDGTFYLITTNVDGM---KDGGNFIVTADDPAGPWSDP-V-WLDS------GGIDPSLFFDDDGKVY 131 (288)
T ss_pred CCCceEcce-EEEECCEEEEEEEecCCC---CCCceEEEEeCCCCCCCcCC-E-ecCC------CccCCceeEcCCCCEE
Confidence 344466784 788999999999876532 2335667899988 378742 2 2222 3446888887789999
Q ss_pred EEEcccCCC----CcceEEEEEEcCCCCCccceeEecCCCc--eecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec
Q 014220 133 IFYTGIDPH----NRQVQNLAVPKNLSDPYLREWVKSPKNP--LMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (428)
Q Consensus 133 l~YTg~~~~----~~~~q~lA~S~D~~d~~l~~w~k~~~nP--vi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~ 206 (428)
|+|...... ....+.++..+. ..++-. +.| +.... ......-|.| ++ .+|+|||++.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~i~~~~l~~------~~~~~~-~~~~~~~~~~-----~~~~~Egp~v-~k-~~g~YYl~ys~~~ 197 (288)
T cd09000 132 LVGNGWDERRGYNGHGGIWLQEIDL------ETGKLL-GEPKVIWNGT-----GGRWPEGPHL-YK-RDGWYYLLIAEGG 197 (288)
T ss_pred EEecccCCccccCCCCcEEEEEEcc------ccCCCC-CCcEEEEeCC-----CCCCcccCeE-EE-ECCEEEEEEecCC
Confidence 988654321 123344443221 112211 222 22111 1123467885 45 5899999986543
Q ss_pred C-CccEEEEEEeCCCC-CcEEc
Q 014220 207 N-RKGLAILYRSKDFV-HWIKA 226 (428)
Q Consensus 207 ~-~~G~i~ly~S~Dl~-~W~~~ 226 (428)
. ..-.+.+++|+++. .|+..
T Consensus 198 ~~~~~~v~~~~s~~~~Gp~~~~ 219 (288)
T cd09000 198 TGYGHSVTVARSRSITGPYEPA 219 (288)
T ss_pred CCCCeEEEEEEeCCCCCCCccC
Confidence 2 22367899999877 57653
No 71
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=97.09 E-value=0.026 Score=56.78 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=98.2
Q ss_pred CCCCCccccccCC---CCCccCCcceEEEC-CEEEEEEeeCCCCC-------CCCCcEEEEEEeCCC-CCCccCCCCCCC
Q 014220 42 NQPYRTGYHFQPP---KNWINDPNGVMIYK-GIYHLFYQYNPKGA-------VWGNIVWAHSTSKDL-INWIPHDPAIYP 109 (428)
Q Consensus 42 ~~~~Rp~~H~~p~---~gw~nDPng~~~~~-G~YHlFYq~~p~~~-------~~g~~~Wgha~S~Dl-v~W~~~~~al~P 109 (428)
..+|.+.--+... ...+.||. ++... |+.+|||...+... .+...+..+..|+|- .+|... ..|.+
T Consensus 57 G~tW~~~~~i~~~~~~~~~~~~p~-~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p-~~l~~ 134 (351)
T cd00260 57 GKTWSPSTVISDGDGKSSRVKDPT-VVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSP-RDLTP 134 (351)
T ss_pred CCcccccEEehhcCCCCCcEEcce-EEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecCC-ccCCc
Confidence 4577665333332 24577895 56666 99999998877542 123556778888887 799863 33333
Q ss_pred CCC-ccCCCeE--eeeEEEcCCCceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccC
Q 014220 110 SQQ-SDINGCW--SGSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRD 186 (428)
Q Consensus 110 ~~~-~D~~gv~--SGsav~~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RD 186 (428)
... .+....+ .|+.+...+|++++.+.+....+.....+.+|+|++ ++|+... +.. . ......
T Consensus 135 ~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G----~tW~~~~--~~~-~-------~~~~~e 200 (351)
T cd00260 135 SVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSG----KTWKLGE--GVN-D-------AGGCSE 200 (351)
T ss_pred cccCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCC----CCcEECC--CCC-C-------CCCCcC
Confidence 321 0111222 234555567888775544333334556677888875 7997632 111 1 022346
Q ss_pred CeEEEECCCCeEEEEEeeecCCccEEEEEEeCC-CCCcEEc
Q 014220 187 PTTAWLGPDKRWRVIIGSKINRKGLAILYRSKD-FVHWIKA 226 (428)
Q Consensus 187 P~V~~~~~~g~y~Mv~ga~~~~~G~i~ly~S~D-l~~W~~~ 226 (428)
|.|+-. .+|+.+|+..... .+.+.++.|.| ...|+..
T Consensus 201 ~~i~el-~dG~l~~~~R~~~--~~~~~~~~S~D~G~tWs~~ 238 (351)
T cd00260 201 CSVVEL-SDGKLYMYTRDNS--GGRRPVYESRDMGTTWTEA 238 (351)
T ss_pred CEEEEe-cCCEEEEEEeeCC--CCcEEEEEEcCCCcCcccC
Confidence 776544 5788887765542 45667888866 5899864
No 72
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=97.05 E-value=0.0044 Score=59.92 Aligned_cols=149 Identities=19% Similarity=0.296 Sum_probs=88.0
Q ss_pred CccCCcceEE-ECCEEEEEEeeCCCCCCCCCcEEEEEEeCC-CCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEE
Q 014220 57 WINDPNGVMI-YKGIYHLFYQYNPKGAVWGNIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (428)
Q Consensus 57 w~nDPng~~~-~~G~YHlFYq~~p~~~~~g~~~Wgha~S~D-lv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~ 134 (428)
-..||. +++ .+|+.||||........+......+.+|+| ..+|.... .|.+.......+...+.++...+|++++-
T Consensus 47 ~~~~p~-~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~-~l~~~~~~~~~~~~~~~~i~~~~G~l~~~ 124 (275)
T PF13088_consen 47 RYGNPS-LVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPT-DLPPGWFGNFSGPGRGPPIQLPDGRLIAP 124 (275)
T ss_dssp EEEEEE-EEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEE-EEHHHCCCSCEECSEEEEEEECTTEEEEE
T ss_pred cccCcE-EEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcc-ccccccccceeccceeeeeEecCCCEEEE
Confidence 456785 444 499999999666555444445555599999 79999764 23222112223444555556678887664
Q ss_pred -EcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEE
Q 014220 135 -YTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAI 213 (428)
Q Consensus 135 -YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ 213 (428)
|... .......+.+|.|++ ++|+... ++. . ....--|.++.. .+|+.+|++-.. ..+.+.
T Consensus 125 ~~~~~--~~~~~~~~~~S~D~G----~tW~~~~--~~~--~------~~~~~e~~~~~~-~dG~l~~~~R~~--~~~~~~ 185 (275)
T PF13088_consen 125 YYHES--GGSFSAFVYYSDDGG----KTWSSGS--PIP--D------GQGECEPSIVEL-PDGRLLAVFRTE--GNDDIY 185 (275)
T ss_dssp EEEES--SCEEEEEEEEESSTT----SSEEEEE--ECE--C------SEEEEEEEEEEE-TTSEEEEEEEEC--SSTEEE
T ss_pred Eeecc--ccCcceEEEEeCCCC----ceeeccc--ccc--c------cCCcceeEEEEC-CCCcEEEEEEcc--CCCcEE
Confidence 4431 234556678899876 8998742 221 1 012234554433 678888777543 222677
Q ss_pred EEEeCC-CCCcEEc
Q 014220 214 LYRSKD-FVHWIKA 226 (428)
Q Consensus 214 ly~S~D-l~~W~~~ 226 (428)
+++|.| ..+|+..
T Consensus 186 ~~~S~D~G~TWs~~ 199 (275)
T PF13088_consen 186 ISRSTDGGRTWSPP 199 (275)
T ss_dssp EEEESSTTSS-EEE
T ss_pred EEEECCCCCcCCCc
Confidence 888866 8899863
No 73
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=96.91 E-value=0.023 Score=56.59 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred EEEcCCCceEEEEcccCCC---CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEE
Q 014220 123 ATILPGEKPAIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWR 199 (428)
Q Consensus 123 av~~~dg~~~l~YTg~~~~---~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~ 199 (428)
.++..+|+++|||--+... +...-++|+|+| |.+|+.. .++|.+. ...+....--..++.. ++.++
T Consensus 14 G~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-----lv~W~~~--~~aL~P~--~~~d~~g~~SGs~~~~--~~~~~ 82 (308)
T PF00251_consen 14 GLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKD-----LVHWEHL--PVALPPD--EEYDADGCFSGSAVVD--DDNLV 82 (308)
T ss_dssp EEEEETTEEEEEEEEETTSSSS-SBEEEEEEESS-----SSSEEEE--EEEE-SS--SGGGTTEEEEEEEEEE--TTCEE
T ss_pred cCeEeCCEEEEEeccCCCCcccceeEEEEEECCC-----CCCceeC--CceEccc--ccCCcCccCcceEEEE--CCEEE
Confidence 3444699999999765421 345568999998 5899986 3666554 2222222333444433 34788
Q ss_pred EEEeeecC-CccEEEEEEe-CCCCCcEEcc--cccccC---CCCCeeecCceEEec
Q 014220 200 VIIGSKIN-RKGLAILYRS-KDFVHWIKAK--HPLHSV---KGTGMWECPDFFPVS 248 (428)
Q Consensus 200 Mv~ga~~~-~~G~i~ly~S-~Dl~~W~~~~--~~l~~~---~~~~~wECPdlf~l~ 248 (428)
|++.+... ..-...++.| +|..+|+... +|+... .....+.=|.+|...
T Consensus 83 ~~YTg~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~ 138 (308)
T PF00251_consen 83 LFYTGNNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWRE 138 (308)
T ss_dssp EEEEEEETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEEC
T ss_pred EEEeccCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEec
Confidence 88877653 2445567777 8999999854 455432 233467778876554
No 74
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=96.82 E-value=0.021 Score=56.63 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=74.5
Q ss_pred CCCCccCCcceEEE-CCEEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccCCCCC----CCCCCcc----------CCCe
Q 014220 54 PKNWINDPNGVMIY-KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAI----YPSQQSD----------INGC 118 (428)
Q Consensus 54 ~~gw~nDPng~~~~-~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al----~P~~~~D----------~~gv 118 (428)
...+.-||+ ++.+ ||+.+|+|-... + ...+..--+.|+..=...+..+ .|+.+|+ ..++
T Consensus 87 ~~~~~IDp~-vf~DdDGk~Yl~~g~~~----~-~~i~~~eL~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~ 160 (295)
T cd08982 87 FPPGLADPA-LFIDDDGRLYLYYGCSN----N-YPLRGVEVDPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPW 160 (295)
T ss_pred cCCCccCCc-eEECCCCCEEEEEecCC----C-CCeEEEEECcccCCccCcceEEEeCCCCCcCeEecCcccccccCCcc
Confidence 345677995 6665 599999984211 1 1123333344443211111111 1112222 1245
Q ss_pred EeeeEEEcCCCceEEEEcccCCC-CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCe
Q 014220 119 WSGSATILPGEKPAIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKR 197 (428)
Q Consensus 119 ~SGsav~~~dg~~~l~YTg~~~~-~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~ 197 (428)
.-|..+...+|+++|+|++.... ..-.+.+|+|++.- ..|++...+||+..+ .+ .....-...+ +.+++|+
T Consensus 161 ~EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~----GP~~~~~~~pil~~~--~~-~~~g~GH~s~-v~~~~G~ 232 (295)
T cd08982 161 MEGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSPL----GPFTYQPHNPFSYKP--GG-FITGAGHGST-FQDKYGN 232 (295)
T ss_pred ccccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCCC----CCCCcCCCCccccCC--CC-eEecCCcccE-EECCCCC
Confidence 66777777799999999865322 22346788887653 457766678888544 21 0011123333 4557889
Q ss_pred EEEEEeee
Q 014220 198 WRVIIGSK 205 (428)
Q Consensus 198 y~Mv~ga~ 205 (428)
|++++-+.
T Consensus 233 ~~~~yh~~ 240 (295)
T cd08982 233 YWHVGTMT 240 (295)
T ss_pred EEEEEEEE
Confidence 98887544
No 75
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=96.48 E-value=0.13 Score=50.54 Aligned_cols=144 Identities=13% Similarity=0.211 Sum_probs=79.1
Q ss_pred ccCCcceEEE--CCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC---CCccCCCCCCCCCCccCCCeEeeeEEEcCCCceE
Q 014220 58 INDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI---NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (428)
Q Consensus 58 ~nDPng~~~~--~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv---~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~ 132 (428)
..-|. ++|+ +++|+|+||+.+ ...+||+|.. .|....+.+.........+.-.-.+ +.+|++.|
T Consensus 78 fwAPq-Vfyf~pk~kwYL~Yq~~~---------~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~Y 146 (303)
T cd08987 78 RVAPQ-VFYFAPQNKWYLIYQWWP---------AAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCY 146 (303)
T ss_pred cccCE-EeeeccCCEEEEEEecCc---------eEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEE
Confidence 45775 6755 699999999632 5589999975 5887655443322112233344555 55689999
Q ss_pred EEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCC--eEEEEEeeecCCcc
Q 014220 133 IFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDK--RWRVIIGSKINRKG 210 (428)
Q Consensus 133 l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g--~y~Mv~ga~~~~~G 210 (428)
||+.+-+. .+..|-... ..|.....+++.... ......-|.-|.| ++ .+| +|+|++-|...+.+
T Consensus 147 Lff~~dnG----~iyra~~~~------~nFp~~~~~~~~~~~--~~~~~~lfEa~~V-yk-v~G~~~YlmiveA~g~~~~ 212 (303)
T cd08987 147 LFFSDDNG----KLYRSSTTL------GNFPNGGTETVIIMS--DSNKNNLFEASNV-YK-VKGQNQYLLIVEAIGSDGG 212 (303)
T ss_pred EEEecCCC----eEEEEecch------hhCCCCCCccEEEec--CCCccccceeeEE-EE-ECCCeEEEEEEEecCCCCC
Confidence 99987542 333332211 122221122222111 0111245778885 55 344 99999977653222
Q ss_pred E-EEEEEeCCCC-CcEEc
Q 014220 211 L-AILYRSKDFV-HWIKA 226 (428)
Q Consensus 211 ~-i~ly~S~Dl~-~W~~~ 226 (428)
+ ..-++|+.|- .|+..
T Consensus 213 rYfrs~Ts~Sl~GpWt~~ 230 (303)
T cd08987 213 RYFRSWTATSLDGPWTPL 230 (303)
T ss_pred CeEEEEEcCCCCCCceec
Confidence 1 1126666654 68764
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=95.99 E-value=0.16 Score=48.99 Aligned_cols=144 Identities=16% Similarity=0.094 Sum_probs=77.9
Q ss_pred CEEEEEEeeCCCCCCCCCcEEEEEEe--CCC-CCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEEcccCCC---C
Q 014220 69 GIYHLFYQYNPKGAVWGNIVWAHSTS--KDL-INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGIDPH---N 142 (428)
Q Consensus 69 G~YHlFYq~~p~~~~~g~~~Wgha~S--~Dl-v~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg~~~~---~ 142 (428)
|+...++.. +...+.......+| +|. .+|.....+..+. -....+..++++.+.+|+++|||+..... .
T Consensus 1 G~l~a~~~~---~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~--~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~ 75 (275)
T PF13088_consen 1 GRLLAVWEG---GSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGP--KPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWS 75 (275)
T ss_dssp SEEEEEEEE---SSCSCCEEEEEEEECCCCCTTEEEEEEEEETST--BTTCEEEEEEEEEETTSEEEEEEEEEETTESCC
T ss_pred CeEEEEEEC---CcccCCCCEEEEEEEeeCCCCeeCCCEEEeecc--ccCCcccCcEEEEeCCCCEEEEEEEccCCCCCC
Confidence 556666665 23334445555555 987 7899765444333 12245667777766799999999544321 1
Q ss_pred cceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEEEEEe-CCCC
Q 014220 143 RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRS-KDFV 221 (428)
Q Consensus 143 ~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ly~S-~Dl~ 221 (428)
.......+|.|++ ++|.... .|.... ........+.+- +-. .+|++++..-........+.++.| +..+
T Consensus 76 ~~~~~~~~S~D~G----~TWs~~~--~l~~~~--~~~~~~~~~~~~-i~~-~~G~l~~~~~~~~~~~~~~~~~~S~D~G~ 145 (275)
T PF13088_consen 76 GSRIYYSRSTDGG----KTWSEPT--DLPPGW--FGNFSGPGRGPP-IQL-PDGRLIAPYYHESGGSFSAFVYYSDDGGK 145 (275)
T ss_dssp TCEEEEEEESSTT----SS-EEEE--EEHHHC--CCSCEECSEEEE-EEE-CTTEEEEEEEEESSCEEEEEEEEESSTTS
T ss_pred ceeEEEEEECCCC----CCCCCcc--cccccc--ccceeccceeee-eEe-cCCCEEEEEeeccccCcceEEEEeCCCCc
Confidence 2222348899875 8999752 333221 111112234432 223 478777763222223344455555 5588
Q ss_pred CcEEcc
Q 014220 222 HWIKAK 227 (428)
Q Consensus 222 ~W~~~~ 227 (428)
.|+...
T Consensus 146 tW~~~~ 151 (275)
T PF13088_consen 146 TWSSGS 151 (275)
T ss_dssp SEEEEE
T ss_pred eeeccc
Confidence 998754
No 77
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.87 Score=48.35 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=81.1
Q ss_pred CCCCCccCCcceEEECCEEEEEEeeCCCCC-CCCCcEEEEEEeCC-CCCCccCCCCCCCCCCccCCCeEeeeEEEcCCCc
Q 014220 53 PPKNWINDPNGVMIYKGIYHLFYQYNPKGA-VWGNIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGCWSGSATILPGEK 130 (428)
Q Consensus 53 p~~gw~nDPng~~~~~G~YHlFYq~~p~~~-~~g~~~Wgha~S~D-lv~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~ 130 (428)
|.+|=+.-|+ ++|+||+|+|+|...+... .+.+++--..+.++ .=.|.+. + ..+.. +.+..|.+.++||+
T Consensus 86 ~~S~giWAPd-l~y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsDp-i-~l~~~-----~~iDPslf~D~dGr 157 (549)
T COG3507 86 PYSGGIWAPD-LSYHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDP-I-KLNGS-----NAIDPSLFFDKDGR 157 (549)
T ss_pred CCCCceeccc-eecCCCcEEEEEecccccCCcccccccEEEEecCCCCCcccc-e-ecCCc-----CccCCceeecCCCC
Confidence 5566677885 7899999999995544322 23333333344333 2367753 2 22221 24568888889999
Q ss_pred eEEEEcccCCCC--cceEEEEEEcCCCCCccceeEecCC--CceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeec
Q 014220 131 PAIFYTGIDPHN--RQVQNLAVPKNLSDPYLREWVKSPK--NPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (428)
Q Consensus 131 ~~l~YTg~~~~~--~~~q~lA~S~D~~d~~l~~w~k~~~--nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~ 206 (428)
.+|+|-+.+... ...-.+-.+.... .+ .+..+ -.++- .+.+.....-|. +++ ++|-|||+.+.+.
T Consensus 158 ~wlv~~~w~~~~~~~~~~~i~l~~~~~----~~-~~l~g~~~~~~~----~G~~~~~~EGPh-l~k-~~gYYYL~~a~gG 226 (549)
T COG3507 158 KWLVNGSWDGGIFMHSFAGIILQEYDK----TT-QKLVGQGYKIIF----DGGNGGLTEGPH-LYK-KTGYYYLYVAEGG 226 (549)
T ss_pred EEEEecccCCCcccccccceeeeeccc----cc-cccCCccceeEe----ccCCCccccCce-eec-cCCEEEEEEEcCC
Confidence 999999886421 1111111221110 00 11111 01111 111222345675 555 6888888886543
Q ss_pred -CCcc-EEEEEEeCCCCC
Q 014220 207 -NRKG-LAILYRSKDFVH 222 (428)
Q Consensus 207 -~~~G-~i~ly~S~Dl~~ 222 (428)
...| .+.++||+.+..
T Consensus 227 ~t~~gh~~~vaRSKsidG 244 (549)
T COG3507 227 LTTYGHAIRVARSKSIDG 244 (549)
T ss_pred CCccceeEEEEeccCCCC
Confidence 3333 578999987653
No 78
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=93.35 E-value=7.3 Score=38.97 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=81.8
Q ss_pred CcEEEEEEeCCC-CCCccCCCCCCCCCCccCCCeEeeeEEEcCCCceEEEEcccCCC----------CcceEEEEEEcCC
Q 014220 86 NIVWAHSTSKDL-INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGIDPH----------NRQVQNLAVPKNL 154 (428)
Q Consensus 86 ~~~Wgha~S~Dl-v~W~~~~~al~P~~~~D~~gv~SGsav~~~dg~~~l~YTg~~~~----------~~~~q~lA~S~D~ 154 (428)
.+....++|+|. .+|.... ++..... ....+..++.+.+.+|+++|||...... ......+..|.|.
T Consensus 45 ~~~iv~~~S~D~G~tW~~~~-~i~~~~~-~~~~~~~p~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~ 122 (351)
T cd00260 45 AIDIVARRSTDGGKTWSPST-VISDGDG-KSSRVKDPTVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDD 122 (351)
T ss_pred ccceeEEEeccCCCcccccE-EehhcCC-CCCcEEcceEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcC
Confidence 466777888875 8999863 3433322 2356778888875448999999765421 2345667888886
Q ss_pred CCCccceeEecCCCceecCCCCCCCCCCCccCC--eEEEECCCCeEEEEEeeecCC--ccEEEEEEeCCCCCcEEccccc
Q 014220 155 SDPYLREWVKSPKNPLMAPDAMNQINTSSFRDP--TTAWLGPDKRWRVIIGSKINR--KGLAILYRSKDFVHWIKAKHPL 230 (428)
Q Consensus 155 ~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP--~V~~~~~~g~y~Mv~ga~~~~--~G~i~ly~S~Dl~~W~~~~~~l 230 (428)
+ .+|.+. ..+........+ ..-++-| -+. . ++|+++|.+-..... .-...+|..++.+.|+.. ...
T Consensus 123 G----~tW~~p--~~l~~~~~~~~~-~~~~~~~g~gi~-l-~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~-~~~ 192 (351)
T cd00260 123 G----ITWSSP--RDLTPSVKGDNW-AALFTGPGSGIQ-M-KDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLG-EGV 192 (351)
T ss_pred C----ceecCC--ccCCccccCcce-eEEEecCcCeEE-e-cCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEEC-CCC
Confidence 5 799763 122211100011 1112222 222 3 468887766544322 223345555667999863 322
Q ss_pred ccCCCCCeeecCceEEec
Q 014220 231 HSVKGTGMWECPDFFPVS 248 (428)
Q Consensus 231 ~~~~~~~~wECPdlf~l~ 248 (428)
.. ...+.| |.++++.
T Consensus 193 ~~--~~~~~e-~~i~el~ 207 (351)
T cd00260 193 ND--AGGCSE-CSVVELS 207 (351)
T ss_pred CC--CCCCcC-CEEEEec
Confidence 11 123445 6788885
No 79
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=91.86 E-value=1 Score=45.11 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCcceEEECCEEEEEE-eeCCCCCCCCCcEEEEEEeCCC-CCCccCCCCCCCC-CCccCCCeE--eeeEEEcCCCceEEE
Q 014220 60 DPNGVMIYKGIYHLFY-QYNPKGAVWGNIVWAHSTSKDL-INWIPHDPAIYPS-QQSDINGCW--SGSATILPGEKPAIF 134 (428)
Q Consensus 60 DPng~~~~~G~YHlFY-q~~p~~~~~g~~~Wgha~S~Dl-v~W~~~~~al~P~-~~~D~~gv~--SGsav~~~dg~~~l~ 134 (428)
.|- .+..++..+|+- .|+... .......-++.|+|- +.|.+........ .... ... -||.|+.+||++++=
T Consensus 62 rPT-tvvkgn~IymLvG~y~~~~-~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~--~figgGGSGV~m~dGTLVFP 137 (310)
T PF13859_consen 62 RPT-TVVKGNKIYMLVGSYSRSA-GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWK--QFIGGGGSGVVMEDGTLVFP 137 (310)
T ss_dssp EEE-EEEETTEEEEEEEEESS---SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEE--EEEE-SEE-EE-TTS-EEEE
T ss_pred eee-eeecceeEEEEEEEEeccc-cccccceeeeeccCCcceeeecccCCchhccccc--eeecCCCCceEEcCCCEEEE
Confidence 564 334566666665 444321 111222345566654 5798753211111 1111 111 156666779988776
Q ss_pred EcccCCCCc-ceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEeeecCCccEEE
Q 014220 135 YTGIDPHNR-QVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAI 213 (428)
Q Consensus 135 YTg~~~~~~-~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~~~~G~i~ 213 (428)
-.+...... ....|.+|+|.+ .+|+=..+ + .....+||.|+-. ++|+-.|+.... .|.-.
T Consensus 138 v~a~~~~~~~~~SlIiYS~d~g----~~W~lskg---~--------s~~gC~~psv~EW-e~gkLlM~~~c~---~g~rr 198 (310)
T PF13859_consen 138 VQATKKNGDGTVSLIIYSTDDG----KTWKLSKG---M--------SPAGCSDPSVVEW-EDGKLLMMTACD---DGRRR 198 (310)
T ss_dssp EEEEETT---EEEEEEEESSTT----SS-EE-S---------------TT-EEEEEEEE--TTEEEEEEE-T---TS---
T ss_pred EeeeccCccceEEEEEEECCCc----cceEeccc---c--------CCCCcceEEEEec-cCCeeEEEEecc---cceEE
Confidence 666555444 366788998854 78985322 1 1234579998855 578877776432 24557
Q ss_pred EEEeCC-CCCcEEccccc
Q 014220 214 LYRSKD-FVHWIKAKHPL 230 (428)
Q Consensus 214 ly~S~D-l~~W~~~~~~l 230 (428)
+|+|.| ...|+..-..|
T Consensus 199 VYeS~DmG~tWtea~gtl 216 (310)
T PF13859_consen 199 VYESGDMGTTWTEALGTL 216 (310)
T ss_dssp EEEESSTTSS-EE-TTTT
T ss_pred EEEEcccceehhhccCcc
Confidence 999977 46799743333
No 80
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=87.29 E-value=9.8 Score=39.59 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCEEEEEEeeCCCC-CCC-----CCcEEEEEEeCC----CCCCccCCCCCCCCCCccC-------CCeEeeeEEEc-CCC
Q 014220 68 KGIYHLFYQYNPKG-AVW-----GNIVWAHSTSKD----LINWIPHDPAIYPSQQSDI-------NGCWSGSATIL-PGE 129 (428)
Q Consensus 68 ~G~YHlFYq~~p~~-~~~-----g~~~Wgha~S~D----lv~W~~~~~al~P~~~~D~-------~gv~SGsav~~-~dg 129 (428)
+|+..|||.....+ ... -...-+++.+.| +..|+.+.+.+.+++.+-+ ...-.+.++.+ .+|
T Consensus 143 dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G 222 (428)
T PF02435_consen 143 DGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDG 222 (428)
T ss_dssp TSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTT
T ss_pred CCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCC
Confidence 69999999984321 111 124556777777 5577777777788764321 34457888876 589
Q ss_pred ceEEEEcccCCC--------C------------------------cceEEEEEEcCCCCCccceeEecCCCceecCCCCC
Q 014220 130 KPAIFYTGIDPH--------N------------------------RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMN 177 (428)
Q Consensus 130 ~~~l~YTg~~~~--------~------------------------~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~ 177 (428)
+.||++.|+... + ...++||+..+.. +..|+-+ .|+|...
T Consensus 223 ~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~---~~~w~~~--~PL~~a~--- 294 (428)
T PF02435_consen 223 KRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDD---GTVWELL--PPLLSAN--- 294 (428)
T ss_dssp EEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTT---TSEEEEE--EEEEEET---
T ss_pred cEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCC---CCccEEe--Ccceecc---
Confidence 999999886421 0 1236788876643 3568876 4888654
Q ss_pred CCCCCCccCCeEEEECCCCeEEEEEeeec
Q 014220 178 QINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (428)
Q Consensus 178 ~~~~~~~RDP~V~~~~~~g~y~Mv~ga~~ 206 (428)
. -.....=|.||++ +|+||++..++.
T Consensus 295 ~-v~de~ERP~iv~~--~gkyYLFt~s~~ 320 (428)
T PF02435_consen 295 G-VNDELERPHIVFM--NGKYYLFTISHL 320 (428)
T ss_dssp T-TBS-EEEEEEEEE--TTEEEEEEEEEG
T ss_pred c-ccccccCCcEEEE--CCEEEEEEEecc
Confidence 1 2344566887766 899999998886
No 81
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=85.15 E-value=13 Score=39.60 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=56.0
Q ss_pred cCCCceEEEEcccCC---CCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEE
Q 014220 126 LPGEKPAIFYTGIDP---HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVII 202 (428)
Q Consensus 126 ~~dg~~~l~YTg~~~---~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~ 202 (428)
..+|+|++||-=+.. .+...=+.|+|+| |.+|+..+ +++.|. ..++.....--.+|-. .++.+.|+-
T Consensus 49 y~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~D-----lv~W~~~p--iaL~Pd--~~~d~~g~ySGSAV~~-~~~l~lfyt 118 (486)
T COG1621 49 YFDGKYHLFYQYNPFGAAHGPKHWGHAVSKD-----LVHWEHLP--IALAPD--DDYDSHGCYSGSAVVD-DGNLSLFYT 118 (486)
T ss_pred EECCEEEEEEecCCCCCCCCCceeeeeccCC-----cccceECC--ceecCC--CccccCCceeeeEEEe-CCcEEEEEc
Confidence 358999999975532 1333446899977 69999752 455544 2222223333333323 466777776
Q ss_pred eeecC---Ccc-EEEEEEeCCCCCcEE-ccccccc
Q 014220 203 GSKIN---RKG-LAILYRSKDFVHWIK-AKHPLHS 232 (428)
Q Consensus 203 ga~~~---~~G-~i~ly~S~Dl~~W~~-~~~~l~~ 232 (428)
|.-.+ .+. .=.++.|+|..+++. .+.++..
T Consensus 119 g~v~~~~~~r~~~Q~iA~s~dg~~f~K~~~~~i~~ 153 (486)
T COG1621 119 GNVRDSNGIRQQTQCIAYSEDGGTFEKYSGNPIID 153 (486)
T ss_pred cceeccCCcceeEEEEEEEcCCCceEeccCCceec
Confidence 65442 122 235778888888877 3555543
No 82
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=84.34 E-value=33 Score=34.41 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=85.1
Q ss_pred CccCCcceEEECCEEEEEEeeCCC-CC---CCCCcEEEEEEeCC-CCCCccCCCCCCCCCCccCCCe------EeeeEEE
Q 014220 57 WINDPNGVMIYKGIYHLFYQYNPK-GA---VWGNIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGC------WSGSATI 125 (428)
Q Consensus 57 w~nDPng~~~~~G~YHlFYq~~p~-~~---~~g~~~Wgha~S~D-lv~W~~~~~al~P~~~~D~~gv------~SGsav~ 125 (428)
.--=|.+.|-.+|+-+|.|+..-. ++ .|..-.=+.+.|+| ..+|+..+..+.+..+.- .|+ |.=++..
T Consensus 93 ~t~iPt~~I~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~-~g~~~~~~~fq~~a~~ 171 (316)
T PF13810_consen 93 TTVIPTDGISVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFH-PGFNQGNWNFQMAAFV 171 (316)
T ss_pred eEEcccceEEECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCccccccccc-CCcccccccccccccc
Confidence 344478888899999999986532 11 23322447889999 689999986555543110 111 2222333
Q ss_pred cCCCceEEEEcccCCCCcceEEEEEEcCCCCCccc--------e--eEecCC--CceecCCCCCCCCCCCccCCeEEEEC
Q 014220 126 LPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLR--------E--WVKSPK--NPLMAPDAMNQINTSSFRDPTTAWLG 193 (428)
Q Consensus 126 ~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~--------~--w~k~~~--nPvi~~~~~~~~~~~~~RDP~V~~~~ 193 (428)
..||-+|+|=|...+. ....||...-..-.++. . |.+... .||+..+ +--..|.|.+
T Consensus 172 ~~dgyVYv~gt~~~R~--g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~---------vgElSv~~~~ 240 (316)
T PF13810_consen 172 KDDGYVYVYGTPFGRN--GGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGP---------VGELSVRYNE 240 (316)
T ss_pred CCCCEEEEEeCCCCCC--CcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCC---------ccceEEEEeC
Confidence 3466666666654432 22334432211000011 2 543211 2444322 2233566776
Q ss_pred CCCeEEEEEeeecCCccEEEEEEeCCCC-CcEE
Q 014220 194 PDKRWRVIIGSKINRKGLAILYRSKDFV-HWIK 225 (428)
Q Consensus 194 ~~g~y~Mv~ga~~~~~G~i~ly~S~Dl~-~W~~ 225 (428)
..|+|+|+.... ..+.|.+.++++.. .|+.
T Consensus 241 ~~gk~Vl~~~~~--~~~~I~~RtA~~P~GpWs~ 271 (316)
T PF13810_consen 241 YLGKWVLSYFDA--GTGGIVLRTAPSPTGPWSE 271 (316)
T ss_pred CCCEEEEEEecc--cCCcEEEEecCCCCCCCCC
Confidence 789999998643 33568888888877 5874
No 83
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=83.05 E-value=7.5 Score=36.63 Aligned_cols=103 Identities=22% Similarity=0.374 Sum_probs=62.0
Q ss_pred eEEECC-EEEEEEeeCCCCCCCCCcEEEEEEeCCCCCCccC--CCCCC-CCCCccCCCeE--eeeEEEcCCCceEEEEcc
Q 014220 64 VMIYKG-IYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPH--DPAIY-PSQQSDINGCW--SGSATILPGEKPAIFYTG 137 (428)
Q Consensus 64 ~~~~~G-~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv~W~~~--~~al~-P~~~~D~~gv~--SGsav~~~dg~~~l~YTg 137 (428)
.++++| .|+++-|..|+-.. +.....|.-.+ -|+-. ++.|. |.-+|+..|.| .|.+|+..+|++.+-|++
T Consensus 137 tfeh~gk~yyvwaqkdp~i~g--nsniyiaemen--pwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysa 212 (324)
T COG3940 137 TFEHNGKLYYVWAQKDPNIKG--NSNIYIAEMEN--PWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSA 212 (324)
T ss_pred eeeeCCEEEEEEeccCCCccC--CcceEEEeccC--CceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEec
Confidence 345666 57788888886543 44455554333 46654 34443 34466767776 488888789999999987
Q ss_pred cCCCCcceEEEEEE---cCCCCCccceeEecCCCceecC
Q 014220 138 IDPHNRQVQNLAVP---KNLSDPYLREWVKSPKNPLMAP 173 (428)
Q Consensus 138 ~~~~~~~~q~lA~S---~D~~d~~l~~w~k~~~nPvi~~ 173 (428)
...+-.-..++-.. +|.-|+ .+|+|. ..||+..
T Consensus 213 satd~nycmgllwanen~dlldp--aswtks-ptpvf~t 248 (324)
T COG3940 213 SATDVNYCMGLLWANENSDLLDP--ASWTKS-PTPVFKT 248 (324)
T ss_pred cccccceeeeeeeecccCCcCCc--hhcccC-CCcceee
Confidence 64332222333322 233233 589997 4788853
No 84
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=81.75 E-value=19 Score=38.19 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=54.9
Q ss_pred CCCceEEEEcccCCC---CcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEEEEe
Q 014220 127 PGEKPAIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (428)
Q Consensus 127 ~dg~~~l~YTg~~~~---~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~Mv~g 203 (428)
.+|.++|||.-+... +...=++|+|+| |++|+..+ |.|.|.+... ....|---.++ . .+|.=.|++.
T Consensus 68 ykG~yHLFyQyNP~gavwg~ivWGHavSkD-----LinW~~lp--~Ai~Ps~~~d-ing~wSGSati-~-~~~~~vilyt 137 (571)
T KOG0228|consen 68 YKGKYHLFYQYNPKGAVWGNIVWGHAVSKD-----LINWEALP--PAIAPSEWFD-INGCWSGSATI-D-PNNSPVILYT 137 (571)
T ss_pred cCcEEEEEEecCCCCceeeeeEeeeecchh-----hccccccC--cccCCCCccc-cCccccceEEE-c-cCCCeEEEec
Confidence 589999999865432 334557899987 69999864 6665541111 12334444333 2 5777788876
Q ss_pred eecCCccEEEEEEe-CC-----CCCcEEcc
Q 014220 204 SKINRKGLAILYRS-KD-----FVHWIKAK 227 (428)
Q Consensus 204 a~~~~~G~i~ly~S-~D-----l~~W~~~~ 227 (428)
+-.....+|..|.- .| |+.|...+
T Consensus 138 g~d~~~rqVqn~a~p~d~sdp~l~~w~k~~ 167 (571)
T KOG0228|consen 138 GIDPNNRQVQNYAYPKDVSDPQLIAWSKDG 167 (571)
T ss_pred ccCcCceEEEEEeccCCCCchhhheeecCC
Confidence 65544556666653 23 45676543
No 85
>PTZ00334 trans-sialidase; Provisional
Probab=78.00 E-value=18 Score=40.65 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=54.7
Q ss_pred eeEEEcCCCceEEEEcccCCCCcceEEEEEEcCCCCCccceeEecCCCceecCCCCCCCCCCCccCCeEEEECCCCeEEE
Q 014220 121 GSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRV 200 (428)
Q Consensus 121 Gsav~~~dg~~~l~YTg~~~~~~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~y~M 200 (428)
||.|+..||.+++=-.+..+++.....|.+|+|.+ +|+=..+ ......+||.|+-. ++|+-.|
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g-----~W~ls~g-----------~s~~gC~~P~I~EW-e~gkLlM 325 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATE-----SGNLSKG-----------MSADGCSDPSVVEW-KEGKLMM 325 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCC-----CeEEcCC-----------CCCCCCCCCEEEEE-cCCeEEE
Confidence 55566678987765555544555566778888753 4753211 12234689998755 4577777
Q ss_pred EEeeecCCccEEEEEEeCCC-CCcEEccc
Q 014220 201 IIGSKINRKGLAILYRSKDF-VHWIKAKH 228 (428)
Q Consensus 201 v~ga~~~~~G~i~ly~S~Dl-~~W~~~~~ 228 (428)
+.... .|+-.+|+|.|. ..|+..-.
T Consensus 326 ~t~C~---dG~RrVYES~DmG~tWtEAlG 351 (780)
T PTZ00334 326 MTACD---DGRRRVYESGDKGDSWTEALG 351 (780)
T ss_pred EEEeC---CCCEEEEEECCCCCChhhCCC
Confidence 66543 234469999884 67986433
No 86
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=71.71 E-value=1e+02 Score=29.90 Aligned_cols=72 Identities=25% Similarity=0.451 Sum_probs=42.7
Q ss_pred ccCCcceEEE--CCEEEEEEeeCCCCCCCCCcEEEEEEeCCCC---CCccCCCCCCCCCCc-cCCCeEeeeEEEcCCCce
Q 014220 58 INDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI---NWIPHDPAIYPSQQS-DINGCWSGSATILPGEKP 131 (428)
Q Consensus 58 ~nDPng~~~~--~G~YHlFYq~~p~~~~~g~~~Wgha~S~Dlv---~W~~~~~al~P~~~~-D~~gv~SGsav~~~dg~~ 131 (428)
.--|. ++|+ +..|.|.||+.+ ......||+|-- -|....+ |..+.-- ...|...--+|- ++-..
T Consensus 76 ~vAP~-vFYFaPk~~W~L~yQwg~-------~~fsY~Ts~DptnpngWSapq~-lf~g~i~~~~~g~iD~~vI~-D~~n~ 145 (271)
T PF03664_consen 76 AVAPQ-VFYFAPKNIWYLAYQWGP-------AAFSYSTSSDPTNPNGWSAPQP-LFSGSISGSGTGPIDQWVIC-DDTNM 145 (271)
T ss_pred cccce-EEEecCCcEEEEEEecCC-------CcceeecCCCCCCCccCCCCcc-cccccccCCCCCceeeEEEe-cCCce
Confidence 34564 6665 789999999654 234567898875 3876544 3332211 112333344433 35678
Q ss_pred EEEEcccC
Q 014220 132 AIFYTGID 139 (428)
Q Consensus 132 ~l~YTg~~ 139 (428)
|||+++-+
T Consensus 146 yLFfa~Dn 153 (271)
T PF03664_consen 146 YLFFAGDN 153 (271)
T ss_pred EEEEcCCC
Confidence 99999854
No 87
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=70.35 E-value=21 Score=35.81 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=52.3
Q ss_pred CCCceEEEEcccCCCC-------cceEEEEEEcCCCCCccceeEecCCCceecCC-CCCCCCCCCccCCeE--EEECCCC
Q 014220 127 PGEKPAIFYTGIDPHN-------RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPD-AMNQINTSSFRDPTT--AWLGPDK 196 (428)
Q Consensus 127 ~dg~~~l~YTg~~~~~-------~~~q~lA~S~D~~d~~l~~w~k~~~nPvi~~~-~~~~~~~~~~RDP~V--~~~~~~g 196 (428)
.+|+.||.|..+..-+ .....||+|.|.+ .+|++.+. .+-.+. ..++... .-.++. -+. .++
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G----~tW~~~~~-~~~~~~~~~~g~~~--~~~~fq~~a~~-~~d 174 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNG----ETWTVVPG-TIRPNSPFHPGFNQ--GNWNFQMAAFV-KDD 174 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCC----CCceeCCC-cccccccccCCccc--ccccccccccc-CCC
Confidence 4889999998874311 2256799999975 79998742 222221 0011110 011221 122 355
Q ss_pred eEEEEEeeecCCccEEEEEEe-----CCCCCcEEc
Q 014220 197 RWRVIIGSKINRKGLAILYRS-----KDFVHWIKA 226 (428)
Q Consensus 197 ~y~Mv~ga~~~~~G~i~ly~S-----~Dl~~W~~~ 226 (428)
.|+-++|....+.|.+.|++- .|+..|++-
T Consensus 175 gyVYv~gt~~~R~g~~~LaRV~~~~i~d~~ayeyw 209 (316)
T PF13810_consen 175 GYVYVYGTPFGRNGGVYLARVPPDDILDRSAYEYW 209 (316)
T ss_pred CEEEEEeCCCCCCCcEEEEEeCHHHCCChhhcccc
Confidence 687788876555677788875 455566654
No 88
>PLN03207 stomagen; Provisional
Probab=28.51 E-value=26 Score=28.75 Aligned_cols=15 Identities=47% Similarity=0.881 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhceee
Q 014220 8 LFLFFALFLGHGVVE 22 (428)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (428)
+||||+|+|++.|+.
T Consensus 16 ffLl~~llla~~v~q 30 (113)
T PLN03207 16 FFLLFFLLLGAYVIQ 30 (113)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566777778887764
No 89
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.15 E-value=30 Score=24.49 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhceeeeeccccc
Q 014220 6 LSLFLFFALFLGHGVVELQASHHV 29 (428)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (428)
++|.+||++|+++.+.++..++.+
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccchh
Confidence 578889999999999998877544
No 90
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=20.78 E-value=77 Score=16.04 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=6.6
Q ss_pred EEcCCCCCccceeEe
Q 014220 150 VPKNLSDPYLREWVK 164 (428)
Q Consensus 150 ~S~D~~d~~l~~w~k 164 (428)
+|.|+| .+|++
T Consensus 2 ~S~D~G----~TW~~ 12 (12)
T PF02012_consen 2 YSTDGG----KTWKK 12 (12)
T ss_dssp EESSTT----SS-EE
T ss_pred EeCCCc----ccCcC
Confidence 467765 78874
Done!