Query 014221
Match_columns 428
No_of_seqs 319 out of 1791
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2813 Predicted molecular ch 100.0 2.1E-84 4.5E-89 632.3 20.5 396 16-428 7-406 (406)
2 COG0484 DnaJ DnaJ-class molecu 99.9 3E-24 6.6E-29 217.8 11.0 259 103-405 14-335 (371)
3 PRK14298 chaperone protein Dna 99.7 3.3E-17 7.2E-22 168.5 10.3 194 175-404 111-335 (377)
4 PRK14296 chaperone protein Dna 99.7 1.3E-16 2.8E-21 163.8 11.8 196 175-405 119-346 (372)
5 PRK14288 chaperone protein Dna 99.7 9E-17 2E-21 164.8 10.0 260 103-404 13-329 (369)
6 PRK14278 chaperone protein Dna 99.7 1.3E-16 2.9E-21 164.0 10.4 194 176-405 110-335 (378)
7 PRK14286 chaperone protein Dna 99.7 1.2E-16 2.6E-21 164.1 9.9 195 175-405 120-342 (372)
8 PRK14285 chaperone protein Dna 99.7 1.5E-16 3.2E-21 163.1 10.3 143 175-346 116-277 (365)
9 PRK14295 chaperone protein Dna 99.7 2.2E-16 4.8E-21 163.0 11.0 194 175-405 136-357 (389)
10 PTZ00037 DnaJ_C chaperone prot 99.7 5.7E-16 1.2E-20 161.4 13.9 197 175-403 120-347 (421)
11 PRK14276 chaperone protein Dna 99.7 3.6E-16 7.8E-21 160.9 11.3 195 175-405 116-341 (380)
12 PRK10767 chaperone protein Dna 99.7 4.1E-16 8.8E-21 160.0 10.8 196 175-404 112-332 (371)
13 PRK14280 chaperone protein Dna 99.6 9.8E-16 2.1E-20 157.5 11.6 197 175-405 113-338 (376)
14 PRK14287 chaperone protein Dna 99.6 9.1E-16 2E-20 157.5 10.8 194 175-404 108-332 (371)
15 PRK14277 chaperone protein Dna 99.6 6.3E-16 1.4E-20 159.5 9.5 135 175-337 125-278 (386)
16 PRK14294 chaperone protein Dna 99.6 1.8E-15 4E-20 155.0 12.5 144 175-346 114-275 (366)
17 PRK14300 chaperone protein Dna 99.6 1.2E-15 2.6E-20 156.7 11.2 135 183-342 120-270 (372)
18 PRK14284 chaperone protein Dna 99.6 3.9E-15 8.5E-20 153.8 14.4 139 175-342 128-283 (391)
19 PRK14297 chaperone protein Dna 99.6 1.7E-15 3.7E-20 155.9 11.0 195 175-405 118-343 (380)
20 PRK14279 chaperone protein Dna 99.6 9E-15 2E-19 151.2 14.8 194 175-405 143-363 (392)
21 TIGR02349 DnaJ_bact chaperone 99.6 4.6E-15 1E-19 151.2 12.3 198 175-405 113-338 (354)
22 PRK14282 chaperone protein Dna 99.6 1.3E-14 2.8E-19 148.9 14.6 139 175-341 122-280 (369)
23 PRK14283 chaperone protein Dna 99.6 7.6E-15 1.6E-19 151.1 10.8 140 175-343 116-276 (378)
24 PRK14281 chaperone protein Dna 99.6 2.2E-14 4.8E-19 148.6 13.7 189 183-405 138-357 (397)
25 PRK14291 chaperone protein Dna 99.6 5.3E-14 1.1E-18 145.1 15.0 139 175-343 126-281 (382)
26 PRK14301 chaperone protein Dna 99.6 2.7E-14 5.8E-19 146.8 12.5 143 175-346 114-275 (373)
27 PRK14290 chaperone protein Dna 99.5 9.1E-14 2E-18 142.5 13.2 138 183-346 124-281 (365)
28 PRK14292 chaperone protein Dna 99.5 9.9E-14 2.2E-18 142.4 10.2 140 175-341 109-266 (371)
29 PRK14289 chaperone protein Dna 99.5 4.7E-13 1E-17 138.1 13.1 134 176-337 125-277 (386)
30 PRK14293 chaperone protein Dna 99.4 7E-13 1.5E-17 136.4 11.9 191 183-404 118-338 (374)
31 KOG2813 Predicted molecular ch 99.4 1.9E-13 4.1E-18 135.3 4.1 188 103-294 34-259 (406)
32 KOG0712 Molecular chaperone (D 99.4 8.2E-13 1.8E-17 133.2 8.5 249 99-404 48-324 (337)
33 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.9 2.9E-09 6.3E-14 83.9 5.4 47 237-290 13-66 (66)
34 PLN03165 chaperone protein dna 98.6 3.6E-08 7.8E-13 85.5 4.1 55 209-294 42-100 (111)
35 KOG0715 Molecular chaperone (D 98.4 7E-08 1.5E-12 96.5 0.8 204 102-337 52-275 (288)
36 PLN03165 chaperone protein dna 98.2 2.3E-06 5E-11 74.3 4.9 46 238-292 40-87 (111)
37 COG1107 Archaea-specific RecJ- 97.9 8.4E-06 1.8E-10 87.2 3.5 80 208-291 2-106 (715)
38 COG0484 DnaJ DnaJ-class molecu 97.5 0.00022 4.9E-09 73.6 6.6 58 209-271 146-210 (371)
39 COG1107 Archaea-specific RecJ- 97.2 0.00029 6.3E-09 75.7 3.7 64 220-287 3-87 (715)
40 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.8 0.0013 2.8E-08 51.8 3.4 54 211-279 1-66 (66)
41 TIGR02642 phage_xxxx uncharact 96.8 0.0018 4E-08 61.1 5.0 37 260-302 101-137 (186)
42 PRK14284 chaperone protein Dna 96.7 0.0032 6.9E-08 65.7 6.9 55 238-294 157-222 (391)
43 PRK14282 chaperone protein Dna 96.7 0.0041 8.8E-08 64.4 7.7 54 238-293 151-219 (369)
44 PRK14296 chaperone protein Dna 96.7 0.0035 7.7E-08 65.0 6.7 54 238-293 148-216 (372)
45 PRK14279 chaperone protein Dna 96.6 0.0038 8.3E-08 65.2 6.7 54 238-293 172-236 (392)
46 PRK14298 chaperone protein Dna 96.6 0.004 8.7E-08 64.7 6.7 55 238-294 140-209 (377)
47 PTZ00037 DnaJ_C chaperone prot 96.5 0.0057 1.2E-07 64.5 7.0 29 238-269 149-177 (421)
48 PRK14288 chaperone protein Dna 96.5 0.0071 1.5E-07 62.7 7.5 56 210-271 145-205 (369)
49 PRK14285 chaperone protein Dna 96.5 0.005 1.1E-07 63.7 6.2 55 238-294 145-210 (365)
50 PRK14278 chaperone protein Dna 96.4 0.0061 1.3E-07 63.3 6.3 54 238-293 138-206 (378)
51 PRK14276 chaperone protein Dna 96.4 0.0077 1.7E-07 62.6 6.9 55 238-294 145-214 (380)
52 PRK14300 chaperone protein Dna 96.3 0.0088 1.9E-07 62.0 6.8 54 238-293 144-208 (372)
53 PRK10767 chaperone protein Dna 96.3 0.0076 1.6E-07 62.4 6.3 55 238-294 141-206 (371)
54 PRK14280 chaperone protein Dna 96.2 0.01 2.2E-07 61.7 7.0 55 238-294 142-211 (376)
55 PRK14287 chaperone protein Dna 96.2 0.011 2.5E-07 61.2 7.0 54 238-293 137-205 (371)
56 PRK14286 chaperone protein Dna 96.2 0.0087 1.9E-07 62.1 6.1 54 238-293 149-213 (372)
57 PRK14290 chaperone protein Dna 96.2 0.014 3E-07 60.4 7.5 53 238-293 148-215 (365)
58 PRK14281 chaperone protein Dna 96.1 0.0095 2.1E-07 62.3 6.2 53 238-293 162-229 (397)
59 PRK14295 chaperone protein Dna 96.1 0.0098 2.1E-07 62.1 5.9 53 238-292 165-228 (389)
60 PRK14289 chaperone protein Dna 96.0 0.016 3.4E-07 60.4 7.2 56 238-295 153-223 (386)
61 PRK14301 chaperone protein Dna 96.0 0.01 2.3E-07 61.5 5.6 54 238-293 143-207 (373)
62 PRK14277 chaperone protein Dna 96.0 0.012 2.6E-07 61.3 6.0 55 238-294 154-223 (386)
63 PRK14297 chaperone protein Dna 96.0 0.016 3.4E-07 60.3 6.8 31 238-270 147-177 (380)
64 PRK14294 chaperone protein Dna 95.8 0.017 3.8E-07 59.7 6.4 55 238-294 143-208 (366)
65 PRK14293 chaperone protein Dna 95.6 0.017 3.7E-07 59.9 5.5 54 238-293 142-210 (374)
66 TIGR02349 DnaJ_bact chaperone 95.4 0.027 5.9E-07 57.8 5.8 31 238-270 142-172 (354)
67 KOG2824 Glutaredoxin-related p 95.2 0.019 4.2E-07 57.1 3.9 48 209-276 230-280 (281)
68 PRK14283 chaperone protein Dna 95.1 0.039 8.4E-07 57.4 6.0 52 238-291 145-211 (378)
69 KOG2824 Glutaredoxin-related p 94.9 0.023 5E-07 56.5 3.4 40 240-287 230-280 (281)
70 PRK14292 chaperone protein Dna 94.8 0.068 1.5E-06 55.4 6.8 53 238-291 138-205 (371)
71 KOG0712 Molecular chaperone (D 94.7 0.012 2.6E-07 60.3 0.8 149 103-292 14-182 (337)
72 PRK14291 chaperone protein Dna 94.5 0.029 6.3E-07 58.4 3.2 21 100-120 50-70 (382)
73 TIGR02642 phage_xxxx uncharact 94.1 0.038 8.2E-07 52.3 2.8 30 87-122 47-76 (186)
74 cd03031 GRX_GRX_like Glutaredo 92.0 0.14 3.1E-06 46.7 3.3 21 209-229 100-120 (147)
75 KOG0715 Molecular chaperone (D 90.1 0.12 2.7E-06 52.0 1.1 21 101-121 91-111 (288)
76 cd03031 GRX_GRX_like Glutaredo 90.1 0.23 4.9E-06 45.3 2.7 46 218-272 98-147 (147)
77 TIGR03835 termin_org_DnaJ term 87.7 4.7 0.0001 45.9 11.1 47 159-205 634-683 (871)
78 COG1198 PriA Primosomal protei 70.3 8.8 0.00019 43.6 6.2 66 192-289 417-484 (730)
79 KOG0713 Molecular chaperone (D 63.4 7.5 0.00016 40.1 3.6 57 280-336 185-249 (336)
80 TIGR00595 priA primosomal prot 60.3 13 0.00028 40.4 4.9 22 193-214 196-219 (505)
81 PRK05580 primosome assembly pr 57.5 15 0.00033 41.2 5.1 21 194-214 365-387 (679)
82 TIGR00630 uvra excinuclease AB 55.0 9.9 0.00021 44.4 3.1 44 240-303 737-780 (924)
83 PTZ00368 universal minicircle 51.6 30 0.00064 31.0 5.1 11 241-251 79-89 (148)
84 COG5082 AIR1 Arginine methyltr 51.3 14 0.0003 35.3 3.0 70 209-294 61-134 (190)
85 PRK04023 DNA polymerase II lar 49.5 12 0.00027 43.6 2.7 27 271-297 653-680 (1121)
86 PTZ00368 universal minicircle 48.7 31 0.00067 30.9 4.7 11 241-251 54-64 (148)
87 TIGR03602 streptolysinS bacter 48.4 6.5 0.00014 29.6 0.2 12 412-423 23-35 (56)
88 TIGR00630 uvra excinuclease AB 46.9 8.4 0.00018 44.9 0.9 14 282-295 738-751 (924)
89 PRK05580 primosome assembly pr 44.9 15 0.00032 41.4 2.4 50 219-289 381-430 (679)
90 PRK10266 curved DNA-binding pr 44.6 85 0.0018 31.7 7.6 42 296-337 158-208 (306)
91 PRK14873 primosome assembly pr 43.3 36 0.00077 38.4 5.1 21 193-214 367-389 (665)
92 COG0178 UvrA Excinuclease ATPa 43.1 19 0.00042 41.4 3.0 44 240-303 731-774 (935)
93 PRK00349 uvrA excinuclease ABC 42.4 25 0.00055 41.2 3.9 22 280-303 761-782 (943)
94 PHA00626 hypothetical protein 42.3 22 0.00047 27.6 2.3 27 261-287 3-30 (59)
95 KOG4260 Uncharacterized conser 42.3 9.4 0.0002 38.5 0.4 26 258-287 197-223 (350)
96 PF07092 DUF1356: Protein of u 41.5 14 0.00031 36.4 1.5 32 272-303 30-63 (238)
97 TIGR00595 priA primosomal prot 39.1 28 0.00062 37.7 3.4 59 210-289 204-262 (505)
98 PRK00635 excinuclease ABC subu 35.9 28 0.00061 43.5 3.1 22 280-303 1630-1651(1809)
99 PF13901 DUF4206: Domain of un 34.4 15 0.00032 35.1 0.3 21 207-228 141-161 (202)
100 PRK14714 DNA polymerase II lar 34.0 36 0.00078 40.9 3.4 13 365-377 920-932 (1337)
101 PF14353 CpXC: CpXC protein 33.7 36 0.00078 29.7 2.6 11 241-251 3-13 (128)
102 COG0178 UvrA Excinuclease ATPa 33.4 31 0.00067 39.9 2.6 37 321-361 835-874 (935)
103 PRK04023 DNA polymerase II lar 32.7 44 0.00096 39.4 3.7 53 199-267 619-672 (1121)
104 PF07295 DUF1451: Protein of u 32.0 33 0.00072 31.4 2.2 12 239-250 130-141 (146)
105 PRK14714 DNA polymerase II lar 30.8 38 0.00083 40.7 2.9 10 281-290 710-719 (1337)
106 TIGR03655 anti_R_Lar restricti 29.2 52 0.0011 24.5 2.5 11 240-250 2-12 (53)
107 PRK00635 excinuclease ABC subu 28.7 21 0.00046 44.5 0.4 30 240-269 1608-1641(1809)
108 PF08271 TF_Zn_Ribbon: TFIIB z 28.7 62 0.0014 23.0 2.7 9 241-249 2-10 (43)
109 smart00778 Prim_Zn_Ribbon Zinc 27.5 54 0.0012 23.2 2.1 11 240-250 4-14 (37)
110 PF03833 PolC_DP2: DNA polymer 27.1 21 0.00045 41.2 0.0 34 260-293 669-705 (900)
111 PF08273 Prim_Zn_Ribbon: Zinc- 26.6 30 0.00065 24.9 0.7 13 240-252 4-16 (40)
112 PF13368 Toprim_C_rpt: Topoiso 26.5 1E+02 0.0023 23.7 3.8 39 78-116 6-47 (61)
113 PRK14559 putative protein seri 26.3 39 0.00085 38.0 1.9 36 238-288 14-49 (645)
114 PF05927 Penaeidin: Penaeidin; 26.0 35 0.00077 27.4 1.1 41 77-117 12-64 (73)
115 smart00261 FU Furin-like repea 22.8 63 0.0014 22.8 1.9 25 260-288 3-27 (46)
116 PRK14559 putative protein seri 22.8 68 0.0015 36.2 3.0 46 209-267 2-50 (645)
117 PF13453 zf-TFIIB: Transcripti 22.0 44 0.00096 23.6 0.9 7 260-266 21-27 (41)
118 PF03589 Antiterm: Antitermina 21.4 51 0.0011 27.9 1.3 12 240-251 6-17 (95)
119 KOG1025 Epidermal growth facto 21.2 67 0.0014 37.6 2.5 26 258-287 534-559 (1177)
120 PF14843 GF_recep_IV: Growth f 20.8 43 0.00094 29.7 0.8 67 210-288 5-80 (132)
121 COG1198 PriA Primosomal protei 20.8 60 0.0013 37.1 2.1 52 190-248 424-484 (730)
122 TIGR00315 cdhB CO dehydrogenas 20.4 98 0.0021 28.8 3.0 28 91-119 134-161 (162)
123 PRK09570 rpoH DNA-directed RNA 20.0 2E+02 0.0044 23.7 4.5 36 102-137 15-63 (79)
No 1
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-84 Score=632.30 Aligned_cols=396 Identities=28% Similarity=0.470 Sum_probs=364.3
Q ss_pred CCCcccccceeccccCCcccCCCCCCcc-chHHHHhhhcccCCCCCCCCCCCCCCCCCCCCccceeeecCCCCcCCcccc
Q 014221 16 KESGRWSSYEHVGRTNSFIPTASLAGTE-LSVEEIRSASGFSGHYPPSIHAPLISSPEPDPHQQAIVYQGQGGYFGGDYR 94 (428)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (428)
+++.+..+|||..+.++++.+.+.++++ |+++|||.|.+.+.- |||+.++.+.++.+++.++++.|.-. .|
T Consensus 7 ~~l~r~~~l~~~q~~s~sar~~~~~~~~ii~~~e~R~A~~~es~-~ps~kpp~vk~~v~~rIp~~t~~~~~---~~---- 78 (406)
T KOG2813|consen 7 SLLPRDEDLEKHQKFSTSARSKMQYFDDIIPFFECREALEKESK-RPSWKPPTVKKMVFDRIPPSTSIHYI---LE---- 78 (406)
T ss_pred ccCcccccchhhhhhcccccCcccccCcccchhhhhhhcccccC-CcccCCCcccccccccCCcccccccc---cc----
Confidence 6778889999999999999999999888 899999999986644 67999999999999999988865443 22
Q ss_pred CCCCcceeccCCHHHHHHHHHHHHhccCccCCCccceeEEEEeeeeeeEEEEEeeeeeeeccccccccCcCCCCCCCCCC
Q 014221 95 AKANEFQGQILDEVEIRELLIDHVGHRCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERETISETEPYLGGNIDGKDNG 174 (428)
Q Consensus 95 ~~~~~~~~~~lsE~eaReal~~~v~~~cc~gs~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~ePy~g~~vdg~~~g 174 (428)
.+.--.+||+++||||.++++++|||+|.+|++|+|++++.+|.|+|+|+||.|+|...|++.||++..+||+..|
T Consensus 79 ----s~~e~~~~ee~~real~~~~~~~cC~~S~~ag~l~i~~~e~~~~~~~~l~tfveer~~~~q~~PfT~~~~dG~~hg 154 (406)
T KOG2813|consen 79 ----SFTEARSTEEATREALFAAMSEACCSLSGGAGALSIWDFEVMPGHLFVLQTFVEERPGSSQINPFTACNSDGTIHG 154 (406)
T ss_pred ----ccchhcccHHHHHHHHHHHhhchhhhcCCCcccccceehhcCcceEEeeeeeeccccccceecccccCCcCCcccc
Confidence 3332338999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccceeeeeeeeecCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEe
Q 014221 175 PALGTWELDLRSQFPVLFVPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHK 254 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~ 254 (428)
..|+.|++|+..+.|.||+.-+. .+.|||++.|+.|+.|.|+|+..|+.|+|+|. +.|+.+.++.|..|-| ...+.
T Consensus 155 ~~prlw~~d~~~~gp~mf~~~~~-~~~vphs~~v~~ch~c~gRG~~vc~gc~g~G~-~~y~~~~~m~c~sc~G--~~~~k 230 (406)
T KOG2813|consen 155 FHPRLWGTDKCSRGPGMFSGVAH-PAVVPHSMIVTFCHACLGRGAMVCHGCSGSGS-NSYGIGTPMHCMSCTG--VPPPK 230 (406)
T ss_pred cCccccccccccCCCCccccccc-ceeccchHhhhhhhcccCCCceeccCcCCCCc-cccccCcceecccccC--CCCCC
Confidence 99999999999999999976554 89999999999999999999999999999995 7888889999999998 44455
Q ss_pred cCccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeeeeeecCCCCCCCCCcceEEecCcceeE
Q 014221 255 DGSDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTRKVSATSGSASVPDEVFHRAKGVQLCN 334 (428)
Q Consensus 255 ~G~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~~v~a~~~~~g~p~dl~~rvkg~~lf~ 334 (428)
+|+...|..|+|+|+..|++|+|+|+++|.+|+|.|.|+++.++.|.|++...++|+++..++.+|++||.+++|+.||+
T Consensus 231 ~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgsll~~t~~vV~wKn~~krkVSehr~~~~iPeell~~AeG~~~f~ 310 (406)
T KOG2813|consen 231 IGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGSLLNYTRIVVYWKNEKKRKVSEHRTESEIPEELLFQAEGKRIFE 310 (406)
T ss_pred CCccchhhhccCCCcccCCcccCCCCcccccccCccceeeeEEEEEEeechhhhhhhhhcccccCcHHHHHhhhcchhhh
Confidence 67889999999999999999999999999999999999999999999999999999998777889999999999999999
Q ss_pred ecCcEEEeee-ccchhhhchhhHHHHHhh-ccCCCCceeeecceEEEEEeceeEEEeecCceeEEEEEecCceecCCC-C
Q 014221 335 TQAYQCSPAF-FADSFFLNKFSSEVIAER-AHVPPTARIICERHTISVVPVTRVTMTQRGQSFSFYIIGNSREVYLKD-Y 411 (428)
Q Consensus 335 ~e~~~~~Pi~-F~d~~~l~~~sq~lI~eh-~~~~~~~RIl~QR~tI~~IPVTeV~y~~~gk~~~~yVyG~e~~V~a~d-Y 411 (428)
+++..++||. |+.++ +|.+|+..+++| +++++++|||+|||||++||||+|||+++||.|+|||||++++||+|| |
T Consensus 311 ~en~~iypis~~~~~D-v~~~sk~~~a~h~a~~~~~arVi~qRhti~~iPiT~Vh~~~~Gk~~~fYIyGt~k~~Y~~d~y 389 (406)
T KOG2813|consen 311 EENDYIYPISQYQEED-VNKMSKLFCAQHLAKCMGVARVIRQRHTINAIPITKVHFSLGGKKGIFYIYGTQKLCYFPDFY 389 (406)
T ss_pred hccceEEeccccchhh-HHHHHHHHHHHHHHhccchhhhhhhhceeeeeeeeEEEEEecCceEEEEEEecCcEEeccccc
Confidence 9999999984 55443 788888889988 578999999999999999999999999999999999999999999999 9
Q ss_pred ccccccCcccccccccC
Q 014221 412 PSRFCWGLCPCLEWLKL 428 (428)
Q Consensus 412 P~~cC~g~~~~~~~~~~ 428 (428)
|.++|||.|+|++||+.
T Consensus 390 p~rfC~gic~~~~~l~~ 406 (406)
T KOG2813|consen 390 PKRFCFGICYSNKYLTA 406 (406)
T ss_pred ccceEeeecchhhhhcC
Confidence 99999999999999974
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-24 Score=217.83 Aligned_cols=259 Identities=20% Similarity=0.356 Sum_probs=185.6
Q ss_pred ccCCHHHHHHHHHHHHhc-cCccCC-CccceeEEEEeeeeeeEEEEEeeeeeeecccccc--------------------
Q 014221 103 QILDEVEIRELLIDHVGH-RCCWGS-RPARTWKIHAVEDCNVYVGTLETFIEERETISET-------------------- 160 (428)
Q Consensus 103 ~~lsE~eaReal~~~v~~-~cc~gs-~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~-------------------- 160 (428)
...|++||+.||+.+|+. |+.... .++.+-+|.+|.- + |+.-+=.|.|..-+.|
T Consensus 14 k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~e--A--YEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~fgg 89 (371)
T COG0484 14 KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINE--A--YEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGFGG 89 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH--H--HHHhCCHHHHHHhhccCccccccCCcCCCCcCCCCC
Confidence 457999999999999998 999998 8888888888864 5 3333334566655544
Q ss_pred ------ccCcCCCCC--CCCCCCCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCC
Q 014221 161 ------EPYLGGNID--GKDNGPALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQ 229 (428)
Q Consensus 161 ------ePy~g~~vd--g~~~gp~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g 229 (428)
+-++|+... .+++++.++. ||++.++++| +.|+++.|++++. ..|+.|+|+|.+
T Consensus 90 ~~~DIF~~~FgGg~~~~~~~~~~~rG~---Dl~~~l~isleEa~~G~~~~i~~~~~---~~C~~C~GsGak--------- 154 (371)
T COG0484 90 DFGDIFEDFFGGGGGGRRRPNRPRRGA---DLRYNLEITLEEAVFGVKKEIRVTRS---VTCSTCHGSGAK--------- 154 (371)
T ss_pred CHHHHHHHhhcCCCcccCCCCCcccCC---ceEEEEEeEhhhhccCceeeEeccee---eECCcCCCCCCC---------
Confidence 122211100 1233466788 9999999998 7899999999999 999999999998
Q ss_pred CCccccCcccccCCccccccEEEEec--C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEee
Q 014221 230 EPEYYKEKQMSQCFNCYGRGLIAHKD--G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKT 304 (428)
Q Consensus 230 ~~g~~~~~~~~~C~~C~GsG~i~~~~--G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~ 304 (428)
+ +....+|++|+|+|++...+ | ++++|+.|+|+|+++ +++|++|+|.|++...+.|+|+||.
T Consensus 155 -~----gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i--------~~pC~~C~G~G~v~~~~~i~V~IPa 221 (371)
T COG0484 155 -P----GTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII--------KDPCGKCKGKGRVKKKKSISVNIPA 221 (371)
T ss_pred -C----CCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC--------CCCCCCCCCCCeEeeeeEEEEECCC
Confidence 3 24689999999999987776 5 468999999999999 9999999999999999999999996
Q ss_pred ee--------eeeeecCCCCCCCCCcce--EEecCcceeEecC---cEEEeeeccchhhhchhhHHHHHhhccCC-----
Q 014221 305 LS--------TRKVSATSGSASVPDEVF--HRAKGVQLCNTQA---YQCSPAFFADSFFLNKFSSEVIAERAHVP----- 366 (428)
Q Consensus 305 ~v--------~~~v~a~~~~~g~p~dl~--~rvkg~~lf~~e~---~~~~Pi~F~d~~~l~~~sq~lI~eh~~~~----- 366 (428)
++ .++++++. ..+.++||+ +.|+.|.+|.+++ +...||+|++ +++.....++
T Consensus 222 Gv~~g~~ir~~g~G~~g~-~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~---------AalG~~i~vptl~g~ 291 (371)
T COG0484 222 GVDDGDRIRLSGEGEAGP-NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTE---------AALGGEIEVPTLDGR 291 (371)
T ss_pred CCccCCEEEEecCcccCC-CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHH---------HhcCCEEEEEecCCC
Confidence 65 33444431 122346765 5669999999887 4445777664 3333221111
Q ss_pred -----CCceeeecceEEE--EEeceeEEEeecCceeEEEEEecCce
Q 014221 367 -----PTARIICERHTIS--VVPVTRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 367 -----~~~RIl~QR~tI~--~IPVTeV~y~~~gk~~~~yVyG~e~~ 405 (428)
+.....-+..+|+ +||. ++-...|++|+-+.+-++..
T Consensus 292 ~~l~ip~Gtq~G~~~rl~gkG~p~--~~~~~~GDl~v~v~v~~P~~ 335 (371)
T COG0484 292 VKLKIPAGTQTGEVFRLRGKGMPK--LRSGGRGDLYVRVKVETPKN 335 (371)
T ss_pred EEEecCCCCccCcEEEEcCCCccc--cCCCCcCCEEEEEEEEcCCC
Confidence 1122224445555 5555 44555689999998887655
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.3e-17 Score=168.47 Aligned_cols=194 Identities=20% Similarity=0.379 Sum_probs=129.8
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
|.++. |+.+.+.++| +.|++++|.+.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 111 ~~~g~---di~~~l~vslee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 170 (377)
T PRK14298 111 PRRGS---DLRYDLYITLEEAAFGVRKDIDVPRA---ERCSTCSGTGAK----------P----GTSPKRCPTCGGTGQV 170 (377)
T ss_pred CCCCC---CEEEEEEEEHHHhhCCeEEEEEEEee---ccCCCCCCCccc----------C----CCCCCcCCCCCCccEE
Confidence 44566 7777777777 6899999999998 999999999987 2 1346789999999998
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGS 316 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~ 316 (428)
.... | +.++|+.|+|+|+++ ..+|+.|+|.|.+...+.++|+||.++.+ ++..+ ..
T Consensus 171 ~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~-~~ 241 (377)
T PRK14298 171 TTTRSTPLGQFVTTTTCSTCHGRGQVI--------ESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAG-SP 241 (377)
T ss_pred EEEEecCceeEEEEEeCCCCCCCCccc--------CCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCC-CC
Confidence 6543 2 357999999999998 88999999999999999999999976532 22211 01
Q ss_pred CCCCCcceE--EecCcceeEecC-cEE--EeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEec
Q 014221 317 ASVPDEVFH--RAKGVQLCNTQA-YQC--SPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPV 383 (428)
Q Consensus 317 ~g~p~dl~~--rvkg~~lf~~e~-~~~--~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPV 383 (428)
.+.++||++ +++.|..|++++ ++. .+|++. .+|..+...+ +..+ ..+++ .++..++++ ++|.
T Consensus 242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~--eAl~G~~~~i~tldG~i~v~ip~---g~~~g~~lri~g~G~p~ 316 (377)
T PRK14298 242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFT--QAALGADIMVPTLYGKVKMNIPP---GTQTHSVFRLKDKGMPR 316 (377)
T ss_pred CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHH--HHhCCCeEEEecCCCCEEEEeCC---CcccCCEEEECCCCCCC
Confidence 244678765 458999999876 333 345444 2344332111 1111 12232 123333332 5665
Q ss_pred eeEEEeecCceeEEEEEecCc
Q 014221 384 TRVTMTQRGQSFSFYIIGNSR 404 (428)
Q Consensus 384 TeV~y~~~gk~~~~yVyG~e~ 404 (428)
..- .-+|++|+-+.+-+..
T Consensus 317 ~~~--~~~GDL~V~~~V~~P~ 335 (377)
T PRK14298 317 LHG--HGKGDQLVKVIVKTPT 335 (377)
T ss_pred CCC--CCCCCEEEEEEEECCC
Confidence 431 1358888888777754
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1.3e-16 Score=163.84 Aligned_cols=196 Identities=19% Similarity=0.270 Sum_probs=130.0
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| ++|++++|.+.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 119 ~~~g~---di~~~l~ltlee~~~G~~~~i~~~~~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 178 (372)
T PRK14296 119 STKGQ---SVSLDIYLTFKELLFGVDKIIELDLL---TNCSKCFGSGAE----------S----NSDIHICNNCHGTGEV 178 (372)
T ss_pred cCCCC---CeEEEeeccHHHhhCCeeEEEEEeee---eccCCCCCCccC----------C----CCCCccCCCCCCCceE
Confidence 44566 6666667666 6899999999999 999999999987 2 2346789999999998
Q ss_pred EEec--C-----ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCC
Q 014221 252 AHKD--G-----SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGS 316 (428)
Q Consensus 252 ~~~~--G-----~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~ 316 (428)
.... | ..++|+.|+|+|+++ +.+|+.|+|.|.+...+.++|+||.++.+ ++... ..
T Consensus 179 ~~~~~~g~~~~q~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~~ 249 (372)
T PRK14296 179 LVQKNMGFFQFQQSAKCNVCNGAGKII--------KNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHAS-LN 249 (372)
T ss_pred EEEEeccceEEEEEecCCCcCCcceee--------cccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCC-CC
Confidence 6543 2 246999999999999 89999999999999999999999966532 22211 01
Q ss_pred CCCCCcceE--EecCcceeEec-C-cE--EEeeeccchhhhchhhHHHH--Hhh--ccCCCCceeeecceEEE----EEe
Q 014221 317 ASVPDEVFH--RAKGVQLCNTQ-A-YQ--CSPAFFADSFFLNKFSSEVI--AER--AHVPPTARIICERHTIS----VVP 382 (428)
Q Consensus 317 ~g~p~dl~~--rvkg~~lf~~e-~-~~--~~Pi~F~d~~~l~~~sq~lI--~eh--~~~~~~~RIl~QR~tI~----~IP 382 (428)
.+.++||++ +++.|.+|+++ + ++ ..+|++.+ +|..++-.+- ..+ ..+++ +++..+.++ +||
T Consensus 250 ~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~e--AllG~~~~i~tldG~~~v~ip~---~t~~g~~~ri~GkGmP 324 (372)
T PRK14296 250 NGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLD--AILGNEIIIKTLDGDIKYKLPK---SINSNELIIINNKGLY 324 (372)
T ss_pred CCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHH--HhCCCEEEeeCCCCCEEEEECC---ccCCCcEEEEcCCCCC
Confidence 244678765 45899999873 3 34 44554442 2333321110 011 11221 234444443 577
Q ss_pred ceeEEEeecCceeEEEEEecCce
Q 014221 383 VTRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 383 VTeV~y~~~gk~~~~yVyG~e~~ 405 (428)
+..-. .-+|++|+-+.+-++..
T Consensus 325 ~~~~~-~~~GDL~V~~~V~~P~~ 346 (372)
T PRK14296 325 KSINK-DKRGDLIIKVNIVVPKN 346 (372)
T ss_pred cCCCC-CCcCCEEEEEEEECCCC
Confidence 54221 12588888888777654
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=9e-17 Score=164.82 Aligned_cols=260 Identities=17% Similarity=0.257 Sum_probs=161.4
Q ss_pred ccCCHHHHHHHHHHHHhc-cCccCC-CccceeEEEEeeeeeeEEEEEeeeeeeecccccc-------------------c
Q 014221 103 QILDEVEIRELLIDHVGH-RCCWGS-RPARTWKIHAVEDCNVYVGTLETFIEERETISET-------------------E 161 (428)
Q Consensus 103 ~~lsE~eaReal~~~v~~-~cc~gs-~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~-------------------e 161 (428)
+..|++|||.||.+.+.. |+.-.. .+..+-.|..|.. +| .+-+=-+.|..-+.+ .
T Consensus 13 ~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~--AY--evLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~~f~ 88 (369)
T PRK14288 13 KHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINE--AY--GVLSDEKKRALYDRYGKKGLNQAGASQSDFSDFFE 88 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHH--HH--HHhccHHHHHHHHHhcccccccCCCCccccccchh
Confidence 457999999999999887 998764 2322334544442 32 111111222221111 0
Q ss_pred ---cCcCCCCC--C---CCCCCCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCC
Q 014221 162 ---PYLGGNID--G---KDNGPALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQE 230 (428)
Q Consensus 162 ---Py~g~~vd--g---~~~gp~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~ 230 (428)
.+.+..+. + ....+.++. |+.+.+.++| +.|++++|++.+. +.|..|+|+|..
T Consensus 89 ~~~~~F~~~fg~g~~~~~~~~~~~g~---di~~~l~vslee~~~G~~~~i~~~r~---~~C~~C~G~G~~---------- 152 (369)
T PRK14288 89 DLGSFFEDAFGFGARGSKRQKSSIAP---DYLQTIELSFKEAVFGCKKTIKVQYQ---SVCESCDGTGAK---------- 152 (369)
T ss_pred hHHHHHHhhcCCCCcccCcCCCCCCC---CeeEeccccHHHHhCCeEEEEEEEee---ccCCCCCCcccC----------
Confidence 00000001 1 011234455 6666666666 6899999999998 999999999976
Q ss_pred CccccCcccccCCccccccEEEEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee
Q 014221 231 PEYYKEKQMSQCFNCYGRGLIAHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST 307 (428)
Q Consensus 231 ~g~~~~~~~~~C~~C~GsG~i~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~ 307 (428)
. ....+|+.|+|+|++....| ..++|+.|+|+|+++ ..+|+.|+|.|.+...+.++|+||.++.
T Consensus 153 ~-----~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~IP~G~~ 219 (369)
T PRK14288 153 D-----KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII--------KTPCQACKGKTYILKDEEIDAIIPEGID 219 (369)
T ss_pred C-----CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc--------cccCccCCCcceEEEEEEEEEecCCCCC
Confidence 1 23578999999999876665 356999999999998 8899999999999999999999997663
Q ss_pred e--------eeecCCCCCCCCCcceEE--ecCcceeEecC---cEEEeeeccchhhhchhhHHHH--Hhh-c--cCCCCc
Q 014221 308 R--------KVSATSGSASVPDEVFHR--AKGVQLCNTQA---YQCSPAFFADSFFLNKFSSEVI--AER-A--HVPPTA 369 (428)
Q Consensus 308 ~--------~v~a~~~~~g~p~dl~~r--vkg~~lf~~e~---~~~~Pi~F~d~~~l~~~sq~lI--~eh-~--~~~~~~ 369 (428)
+ ++.. ...+.++||++. ++.|..|++++ ++..+|++.+ +|..+.-.+- ..+ . .+++
T Consensus 220 ~G~~i~l~g~G~~--~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~e--AllG~~i~v~tLdG~~l~i~i~~-- 293 (369)
T PRK14288 220 DQNRMVLKNKGNE--YEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTT--IALGHTIKVPSLKGDELELKIPR-- 293 (369)
T ss_pred CCCEEEEccCccC--CCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHH--HhcCCEEEeecCCCCEEEEEeCC--
Confidence 2 2221 112456788755 58899998877 4444665442 2333321111 111 1 1221
Q ss_pred eeeecceEEE----EEeceeEEEeecCceeEEEEEecCc
Q 014221 370 RIICERHTIS----VVPVTRVTMTQRGQSFSFYIIGNSR 404 (428)
Q Consensus 370 RIl~QR~tI~----~IPVTeV~y~~~gk~~~~yVyG~e~ 404 (428)
+++..+.++ ++|... ..-+|++|+-+.+-+..
T Consensus 294 -~~~~g~~~~i~g~G~p~~~--~~~~GDL~v~~~v~~P~ 329 (369)
T PRK14288 294 -NARDRQTFAFRNEGVKHPE--SSYRGSLIVELQVIYPK 329 (369)
T ss_pred -CCCCCcEEEEcCCCCCCCC--CCCCCCEEEEEEEECCC
Confidence 334444443 677543 12258899988887764
No 6
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.3e-16 Score=164.04 Aligned_cols=194 Identities=18% Similarity=0.292 Sum_probs=127.2
Q ss_pred CCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEE
Q 014221 176 ALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIA 252 (428)
Q Consensus 176 ~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~ 252 (428)
.++. |+.+.+.++| +.|+++++.+++. +.|..|+|+|.. . .....+|+.|+|+|++.
T Consensus 110 ~~g~---d~~~~l~vtLee~~~G~~~~i~~~~~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~~ 169 (378)
T PRK14278 110 RPGS---DSLLRMRLDLEECATGVTKQVTVDTA---VLCDRCHGKGTA----------G----DSKPVTCDTCGGRGEVQ 169 (378)
T ss_pred CCCC---CeEEEEEEEHHHhcCCeEEEEEEEee---ccCCCCcCccCC----------C----CCCceecCCccCceEEE
Confidence 3455 6666666666 6899999999999 999999999987 2 13467899999999986
Q ss_pred Eec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCC
Q 014221 253 HKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSA 317 (428)
Q Consensus 253 ~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~ 317 (428)
... | ..++|+.|+|+|+++ ..+|+.|+|.|.+...+.++|.||.++.+ ++.... ..
T Consensus 170 ~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-~~ 240 (378)
T PRK14278 170 TVQRSFLGQVMTSRPCPTCRGVGEVI--------PDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGP-GG 240 (378)
T ss_pred EEEeccceeEEEEEECCCCCccceee--------CCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCC-CC
Confidence 543 2 256999999999998 88999999999999999999999976632 221110 11
Q ss_pred CCCCcceE--EecCcceeEecC-cE--EEeeeccchhhhchhhHHH--H-Hhh--ccCCCCceeeecceEEE----EEec
Q 014221 318 SVPDEVFH--RAKGVQLCNTQA-YQ--CSPAFFADSFFLNKFSSEV--I-AER--AHVPPTARIICERHTIS----VVPV 383 (428)
Q Consensus 318 g~p~dl~~--rvkg~~lf~~e~-~~--~~Pi~F~d~~~l~~~sq~l--I-~eh--~~~~~~~RIl~QR~tI~----~IPV 383 (428)
+.++||++ +++.|..|++++ ++ ..+|+|.+ +|..++..+ + ... ..+++ .++..+.|+ ++|.
T Consensus 241 ~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~e--Al~G~~~~i~tld~~~i~v~ip~---g~~~g~~lrl~g~G~p~ 315 (378)
T PRK14278 241 GPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVD--AALGTTVTVEAILDGPSEITIPP---GTQPGSVITLRGRGMPH 315 (378)
T ss_pred CCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHH--HhcCCeEEEecCCCCeEEEEeCC---CcCCCcEEEECCCCCCC
Confidence 34578765 458999999877 33 33454432 233332111 1 111 12221 122222222 5665
Q ss_pred eeEEEeecCceeEEEEEecCce
Q 014221 384 TRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 384 TeV~y~~~gk~~~~yVyG~e~~ 405 (428)
..- .-+|++|+-+.+-++..
T Consensus 316 ~~~--~~~GDL~V~~~V~~P~~ 335 (378)
T PRK14278 316 LRS--GGRGDLHAHVEVVVPTR 335 (378)
T ss_pred CCC--CCCCCEEEEEEEEcCCC
Confidence 431 13688888887777643
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.2e-16 Score=164.12 Aligned_cols=195 Identities=24% Similarity=0.402 Sum_probs=129.6
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|.+++. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 120 ~~~g~---di~~~l~vtLee~~~G~~k~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~v 179 (372)
T PRK14286 120 PQRGS---DLRYNLEVSLEDAALGREYKIEIPRL---ESCVDCNGSGAS----------K----GSSPTTCPDCGGSGQI 179 (372)
T ss_pred CCCCC---CeeEEEEEEHHHHhCCeeEEEEeecc---ccCCCCcCCCcC----------C----CCCCccCCCCcCeEEE
Confidence 34566 6666666666 6899999999999 999999999986 2 1245789999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....| ..++|+.|+|+|+++ +.+|+.|+|.|.+...+.++|+|+.++.+ ++.... ..+.+
T Consensus 180 ~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~ 250 (372)
T PRK14286 180 RRTQGFFSVATTCPTCRGKGTVI--------SNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGP-NGGPH 250 (372)
T ss_pred EEEeceEEEEEeCCCCCceeeEe--------cccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCC-CCCCC
Confidence 76665 357999999999999 89999999999999999999999976522 221110 11344
Q ss_pred CcceE--EecCcceeEecC-cEE--EeeeccchhhhchhhHHH--HHhh-c--cCCCCceeeecceEEE----EEeceeE
Q 014221 321 DEVFH--RAKGVQLCNTQA-YQC--SPAFFADSFFLNKFSSEV--IAER-A--HVPPTARIICERHTIS----VVPVTRV 386 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~-~~~--~Pi~F~d~~~l~~~sq~l--I~eh-~--~~~~~~RIl~QR~tI~----~IPVTeV 386 (428)
+||++ +++.|..|++++ ++. .+|+|.+ +|..+...+ +..+ . .+++ .++..+.++ ++|...-
T Consensus 251 GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~e--Al~G~~~~i~tldG~~i~v~ip~---g~~~g~~~ri~G~G~P~~~~ 325 (372)
T PRK14286 251 GDLYVVTHIKKHELFERQGNDLILVRKISLAQ--AILGAEIEVPTIDGKKAKMKIPE---GTESGQVFRLKGHGMPYLGA 325 (372)
T ss_pred ceEEEEEEEccCCCEEEecCCEEEEEEECHHH--HhCCCEEEEeCCCCCEEEEEeCC---ccCCCcEEEECCCCCCCCCC
Confidence 78765 558999998876 333 3454442 344332111 1111 1 1221 122333332 6665431
Q ss_pred EEeecCceeEEEEEecCce
Q 014221 387 TMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 387 ~y~~~gk~~~~yVyG~e~~ 405 (428)
.-+|++|+-+.+-+...
T Consensus 326 --~~~GDL~V~~~V~~P~~ 342 (372)
T PRK14286 326 --YGKGDQHVIVKIEIPKK 342 (372)
T ss_pred --CCCCcEEEEEEEECCCC
Confidence 13578888887777643
No 8
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.5e-16 Score=163.05 Aligned_cols=143 Identities=23% Similarity=0.430 Sum_probs=107.5
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|++.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 116 ~~~g~---di~~~l~vtlee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 175 (365)
T PRK14285 116 HEKGQ---DLTYQIEISLEDAYLGYKNNINITRN---MLCESCLGKKSE----------K----GTSPSICNMCNGSGRV 175 (365)
T ss_pred CCCCC---CEEEEEEEEHHHhhCCeEEEEEeeec---ccCCCCCCcccC----------C----CCCCccCCCccCceeE
Confidence 34566 6777777776 6899999999999 999999999976 1 1346789999999988
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....| .+++|+.|+|+|+++ +.+|+.|+|.|.+...+.++|+||.++.+ ++.+.. ..+.+
T Consensus 176 ~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~ 246 (365)
T PRK14285 176 MQGGGFFRVTTTCPKCYGNGKII--------SNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNP-DNQQY 246 (365)
T ss_pred EecCceeEEeeecCCCCCccccc--------CCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCC-CCCCC
Confidence 65444 367999999999998 89999999999999999999999976632 222211 11345
Q ss_pred CcceE--EecCcceeEecC---cEEEeeecc
Q 014221 321 DEVFH--RAKGVQLCNTQA---YQCSPAFFA 346 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~---~~~~Pi~F~ 346 (428)
+||++ +++.|..|++++ ++..+|+|.
T Consensus 247 GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~ 277 (365)
T PRK14285 247 GDLYIKILIKPHKIFKRNGKDLYATLPISFT 277 (365)
T ss_pred CCEEEEEEEecCCCeEEeccceEEEEecCHH
Confidence 78865 458899998876 333455444
No 9
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=2.2e-16 Score=163.00 Aligned_cols=194 Identities=18% Similarity=0.344 Sum_probs=129.1
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|++.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 136 ~~~g~---di~~~l~lsLee~~~G~~k~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 195 (389)
T PRK14295 136 PRRGA---DVESEVTLSFTEAIDGATVPLRLTSQ---APCPACSGTGAK----------N----GTTPRVCPTCSGTGQV 195 (389)
T ss_pred CCCCC---CEEEEEEEEHHHHhCCceEEEEeecc---ccCCCCcccccC----------C----CCCCcCCCCCCCEeEE
Confidence 34566 6676777766 6899999999999 999999999987 2 1346789999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....| .+.+|+.|+|+|+++ +.+|..|+|.|.+...+.++|+|+.++.+ ++... ...+.+
T Consensus 196 ~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~-~~~~~~ 266 (389)
T PRK14295 196 SRNSGGFSLSEPCPDCKGRGLIA--------DDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPG-ERGGPA 266 (389)
T ss_pred EEEecceEEEEecCCCcceeEEe--------ccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCC-CCCCCC
Confidence 76665 357999999999999 89999999999999999999999976632 22111 012335
Q ss_pred CcceE--EecCcceeEecC-cEE--EeeeccchhhhchhhHHH--HHhh-c--cCCCCceeeecceEEE----EEeceeE
Q 014221 321 DEVFH--RAKGVQLCNTQA-YQC--SPAFFADSFFLNKFSSEV--IAER-A--HVPPTARIICERHTIS----VVPVTRV 386 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~-~~~--~Pi~F~d~~~l~~~sq~l--I~eh-~--~~~~~~RIl~QR~tI~----~IPVTeV 386 (428)
+||++ +++.|..|++++ ++. .+|+|.+ +|..+...+ +..+ . .+++ .++..+.|+ ++|...
T Consensus 267 GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~e--Al~G~~~~I~tldG~~~~v~ip~---g~~~g~~iri~G~G~p~~~- 340 (389)
T PRK14295 267 GDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPE--AALGAEVRVPTLGGPPVTVKLPP---GTPNGRVLRVRGKGAVRKD- 340 (389)
T ss_pred ccEEEEEEEecCCCEEEecCCEEEEEeecHHH--HhCCCeEEEECCCCCEEEEEECC---ccCCCcEEEECCCCcCCCC-
Confidence 67765 458999999876 333 3444432 233332111 1111 1 1221 123333332 566422
Q ss_pred EEeecCceeEEEEEecCce
Q 014221 387 TMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 387 ~y~~~gk~~~~yVyG~e~~ 405 (428)
.-+|++|+-+.+-++..
T Consensus 341 --~~~GDL~i~~~v~~P~~ 357 (389)
T PRK14295 341 --GTRGDLLVTVEVAVPKD 357 (389)
T ss_pred --CCCCCEEEEEEEECCCC
Confidence 12578888877777643
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.67 E-value=5.7e-16 Score=161.40 Aligned_cols=197 Identities=19% Similarity=0.380 Sum_probs=129.5
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| ++|++++|++.+. ..|..|+|+|.. . ....+|+.|+|+|++
T Consensus 120 ~~rg~---di~~~l~vtLee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~-----~~~~~C~~C~G~G~~ 178 (421)
T PTZ00037 120 KKRGE---DIVSHLKVTLEQIYNGAMRKLAINKD---VICANCEGHGGP----------K-----DAFVDCKLCNGQGIR 178 (421)
T ss_pred ccCCC---CEEEEeeeeHHHHhCCCceEEEeecc---ccccccCCCCCC----------C-----CCCccCCCCCCCCeE
Confidence 34566 6666666666 6899999999999 999999999975 1 246789999999986
Q ss_pred EEec--C-----ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCC
Q 014221 252 AHKD--G-----SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGS 316 (428)
Q Consensus 252 ~~~~--G-----~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~ 316 (428)
.... | ++.+|+.|+|+|+++ ..+.+|++|+|.|.+...+.|+|+||.++.+ ++.+ ..
T Consensus 179 ~~~~~~g~~~~q~~~~C~~C~G~G~~i------~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~--~~ 250 (421)
T PTZ00037 179 VQIRQMGSMIHQTQSTCNSCNGQGKII------PESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE--KP 250 (421)
T ss_pred EEEEeecceeeEEEEeCCCCCCcceec------cccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC--CC
Confidence 4432 2 356899999999987 2247899999999999999999999976632 2222 12
Q ss_pred CCCCCcceE--EecCcceeEecC---cEEEeeeccchhhhchhhHHHH--Hhh-ccCC-CCceeeecceEEE----EEec
Q 014221 317 ASVPDEVFH--RAKGVQLCNTQA---YQCSPAFFADSFFLNKFSSEVI--AER-AHVP-PTARIICERHTIS----VVPV 383 (428)
Q Consensus 317 ~g~p~dl~~--rvkg~~lf~~e~---~~~~Pi~F~d~~~l~~~sq~lI--~eh-~~~~-~~~RIl~QR~tI~----~IPV 383 (428)
.+.|+||++ +++.|..|++++ ++..+|++.+ +|..+.-.+- ..+ ..+. +...|++-...++ +||+
T Consensus 251 ~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~e--AllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~ 328 (421)
T PTZ00037 251 NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYE--ALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPT 328 (421)
T ss_pred CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHH--HhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCccc
Confidence 356788865 458999999877 3334555442 3444421111 111 1111 1112333333332 6786
Q ss_pred eeEEEeecCceeEEEEEecC
Q 014221 384 TRVTMTQRGQSFSFYIIGNS 403 (428)
Q Consensus 384 TeV~y~~~gk~~~~yVyG~e 403 (428)
..-.+ -+|++|+-|.+-++
T Consensus 329 ~~~~~-~rGDL~V~~~V~~P 347 (421)
T PTZ00037 329 YKSPF-KKGNLYVTFEVIFP 347 (421)
T ss_pred CCCCC-CCCCEEEEEEEEcC
Confidence 44211 25888888887776
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=3.6e-16 Score=160.95 Aligned_cols=195 Identities=20% Similarity=0.302 Sum_probs=127.4
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|.+++. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 116 ~~~g~---di~~~l~vtLee~~~G~~~~i~~~~~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 175 (380)
T PRK14276 116 PRQGD---DLQYRVNLDFEEAIFGKEKEVSYNRE---ATCHTCNGSGAK----------P----GTSPVTCGKCHGSGVI 175 (380)
T ss_pred CCCCC---CEEEEEEEEHHHhcCCeEEEEEeecc---ccCCCCcCcccC----------C----CCCCccCCCCCCeeEE
Confidence 34556 6666666666 6899999999999 999999999986 2 1346789999999998
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGS 316 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~ 316 (428)
.... | ...+|+.|+|+|+++ +.+|+.|+|.|.+...+.++|+|+.++.. ++.... .
T Consensus 176 ~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~-~ 246 (380)
T PRK14276 176 TVDTQTPLGMMRRQVTCDVCHGTGKEI--------KEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGF-N 246 (380)
T ss_pred EEEEecCCceEEEEEECCCCCCCCccc--------cCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCC-C
Confidence 6543 2 256999999999998 89999999999999999999999966522 222111 1
Q ss_pred CCCCCcceE--EecCcceeEecC-cEE--EeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEec
Q 014221 317 ASVPDEVFH--RAKGVQLCNTQA-YQC--SPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPV 383 (428)
Q Consensus 317 ~g~p~dl~~--rvkg~~lf~~e~-~~~--~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPV 383 (428)
.+.++||++ +++.|.+|++++ ++. .+|++. .+|..+.-.+ +..+ ..+++ .++..+.|+ ++|.
T Consensus 247 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~--eAl~G~~~~v~tldg~i~v~ip~---g~~~g~~~~i~g~G~p~ 321 (380)
T PRK14276 247 GGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFV--QAALGDTVEVPTVHGDVELKIPA---GTQTGKKFRLRGKGAPK 321 (380)
T ss_pred CCCCcCEEEEEEEEECcceeeecceEEEEEecCHH--HHhCCCeEEEEcCCCcEEEEECC---CCCCCCEEEECCCCcCC
Confidence 134567765 568999998877 333 344433 2233332111 1111 12222 123333332 5665
Q ss_pred eeEEEeecCceeEEEEEecCce
Q 014221 384 TRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 384 TeV~y~~~gk~~~~yVyG~e~~ 405 (428)
..- .-+|++|+-+.+-++..
T Consensus 322 ~~~--~~~GDL~V~~~v~~P~~ 341 (380)
T PRK14276 322 LRG--GGNGDQHVTVNIVTPTK 341 (380)
T ss_pred CCC--CCCCCEEEEEEEECCCC
Confidence 331 22578888887777643
No 12
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=4.1e-16 Score=159.97 Aligned_cols=196 Identities=19% Similarity=0.331 Sum_probs=127.7
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|.+++. +.|..|+|+|.. . ......|+.|+|+|++
T Consensus 112 ~~~g~---di~~~l~vsLee~~~G~~~~v~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 171 (371)
T PRK10767 112 ARRGA---DLRYNMEITLEEAVRGVTKEIRIPTL---VTCDTCHGSGAK----------P----GTSPKTCPTCHGAGQV 171 (371)
T ss_pred CCCCC---CeEEEEEeehHHhhCCeeEEEeeeec---ccCCCCCCcccC----------C----CCCCccCCCCCCeeEE
Confidence 44565 5666666666 6899999999999 999999999976 1 1235689999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee--------eeeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST--------RKVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~--------~~v~a~~~~~g~p 320 (428)
....| ...+|+.|+|+|+.+ +.+|+.|+|.|.+...+.++|+|+.++. +++.... ..+.+
T Consensus 172 ~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~ 242 (371)
T PRK10767 172 RMQQGFFTVQQTCPTCHGRGKII--------KDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE-RGGPA 242 (371)
T ss_pred EEeeceEEEEEeCCCCCCceeEC--------CCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC-CCCCC
Confidence 76655 357999999999998 8899999999999999999999996552 2222110 12345
Q ss_pred CcceE--EecCcceeEecC-cEEEeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEeceeEEEe
Q 014221 321 DEVFH--RAKGVQLCNTQA-YQCSPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPVTRVTMT 389 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~-~~~~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPVTeV~y~ 389 (428)
+||++ +++.|.+|++++ ++..-+.++...+|..+.-.+ +... ..+++ .++..++++ ++|... -.
T Consensus 243 GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~---g~~~g~~~~i~g~G~p~~~--~~ 317 (371)
T PRK10767 243 GDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPE---GTQTGKLFRLRGKGVKSVR--SG 317 (371)
T ss_pred cCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCC---CCCCCCEEEECCCCcCCCC--CC
Confidence 77765 458999998876 443333223223344332221 1111 12222 122233332 556432 12
Q ss_pred ecCceeEEEEEecCc
Q 014221 390 QRGQSFSFYIIGNSR 404 (428)
Q Consensus 390 ~~gk~~~~yVyG~e~ 404 (428)
-+|++|+.+.+-++.
T Consensus 318 ~~GDL~v~~~v~~P~ 332 (371)
T PRK10767 318 ARGDLYCQVVVETPV 332 (371)
T ss_pred CCCCEEEEEEEECCC
Confidence 358888888877764
No 13
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=9.8e-16 Score=157.55 Aligned_cols=197 Identities=21% Similarity=0.409 Sum_probs=127.2
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.++++| ++|++++|.+.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 113 ~~kg~---di~~~l~vtLee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 172 (376)
T PRK14280 113 PRQGA---DLQYTMTLTFEEAVFGKEKEIEIPKE---ETCDTCHGSGAK----------P----GTSKETCSHCGGSGQV 172 (376)
T ss_pred ccccc---CEEEEEEEEHHHHhCCceeEEEEeee---ccCCCCCCcccC----------C----CCCCccCCCCCCEEEE
Confidence 33455 6666666665 6899999999999 999999999976 2 1346789999999988
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGS 316 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~ 316 (428)
.... | ...+|+.|+|+|+++ +.+|+.|+|.|.+...+.++|.|+.++.+ ++.... .
T Consensus 173 ~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~-~ 243 (376)
T PRK14280 173 SVEQNTPFGRVVNRQTCPHCNGTGQEI--------KEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV-N 243 (376)
T ss_pred EEEeecCCceEEEEEEcCCCCCCCcee--------cCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC-C
Confidence 6543 2 356999999999998 89999999999999999999999976532 222110 1
Q ss_pred CCCCCcceE--EecCcceeEecC-cEEE--eeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE--EEecee
Q 014221 317 ASVPDEVFH--RAKGVQLCNTQA-YQCS--PAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS--VVPVTR 385 (428)
Q Consensus 317 ~g~p~dl~~--rvkg~~lf~~e~-~~~~--Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~--~IPVTe 385 (428)
.+.++||++ +++.|..|++++ ++.+ +|++. .+|..+...+ +..+ ..+++-.+ ..++.+|. ++|...
T Consensus 244 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~--eAl~G~~~~i~tldg~i~v~ip~g~~-~g~~~~i~g~G~p~~~ 320 (376)
T PRK14280 244 GGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFA--QAALGDEIEVPTLHGKVKLKIPAGTQ-TGTQFRLKGKGVPNVR 320 (376)
T ss_pred CCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHH--HHhCCCEEEEecCCceEEEEECCCCC-CCcEEEEcCCCCCCCC
Confidence 134578765 558999998876 4443 44433 2343332111 1111 12232111 01222332 566542
Q ss_pred EEEeecCceeEEEEEecCce
Q 014221 386 VTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 386 V~y~~~gk~~~~yVyG~e~~ 405 (428)
- .-+|++|+-+.+-++..
T Consensus 321 ~--~~~GDL~v~~~v~~P~~ 338 (376)
T PRK14280 321 G--YGQGDQYVVVRVVTPTK 338 (376)
T ss_pred C--CCCCCEEEEEEEECCCC
Confidence 1 13588888887777643
No 14
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=9.1e-16 Score=157.55 Aligned_cols=194 Identities=23% Similarity=0.420 Sum_probs=127.2
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|.+.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 108 ~~~g~---d~~~~l~vslee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 167 (371)
T PRK14287 108 PRQGA---DLQYTMTLEFKEAVFGKETEIEIPRE---ETCGTCHGSGAK----------P----GTKPETCSHCGGSGQL 167 (371)
T ss_pred CCCCC---CEEEEEEEEHHHhcCCeEEEEEEeee---ccCCCCCCcccC----------C----CCCCcccCCCCCEEEE
Confidence 34566 6666666666 6899999999999 999999999986 1 1346789999999988
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee--------eeeecCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST--------RKVSATSGS 316 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~--------~~v~a~~~~ 316 (428)
.... | ...+|+.|+|+|+++ +.+|..|.|.|.+...+.++|.|+.++. +++.... .
T Consensus 168 ~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~-~ 238 (371)
T PRK14287 168 NVEQNTPFGRVVNRRVCHHCEGTGKII--------KQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGV-N 238 (371)
T ss_pred EEEEecCCceEEEEEeCCCCCCCCccc--------cccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCC-C
Confidence 6543 2 256999999999998 8999999999999999999999996652 2222110 1
Q ss_pred CCCCCcceE--EecCcceeEecC-cEEE--eeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEec
Q 014221 317 ASVPDEVFH--RAKGVQLCNTQA-YQCS--PAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPV 383 (428)
Q Consensus 317 ~g~p~dl~~--rvkg~~lf~~e~-~~~~--Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPV 383 (428)
.+.++||++ +++.|..|++++ ++.. +|++. .+|..+...+ +..+ .++++ .++..+.|+ ++|.
T Consensus 239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~--eAl~G~~~~i~~ldg~i~v~ip~---g~~~g~~~ri~g~G~p~ 313 (371)
T PRK14287 239 GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFP--QVALGDEIEVPTLNGKVKLKIPA---GTQTGTSFRLRGKGVPN 313 (371)
T ss_pred CCCCccEEEEEEEecCCCEEEecCCeEEEEeccHH--HHhCCCEEEEEcCCCCEEEEECC---CccCCcEEEEcCCCccC
Confidence 234578765 458999999877 3333 44433 2333332111 1111 12222 122333332 5664
Q ss_pred eeEEEeecCceeEEEEEecCc
Q 014221 384 TRVTMTQRGQSFSFYIIGNSR 404 (428)
Q Consensus 384 TeV~y~~~gk~~~~yVyG~e~ 404 (428)
..- .-+|++|+-+.+-++.
T Consensus 314 ~~~--~~~GDL~V~~~v~~P~ 332 (371)
T PRK14287 314 VHG--RGQGDQHVQVRVVTPK 332 (371)
T ss_pred CCC--CCCCCEEEEEEEEcCC
Confidence 331 1358888888777764
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=6.3e-16 Score=159.46 Aligned_cols=135 Identities=26% Similarity=0.523 Sum_probs=102.1
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|+++++.+.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 125 ~~kg~---di~~~l~vtLee~~~G~~~~v~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 184 (386)
T PRK14277 125 PQKGA---DIRYDLELTFEEAAFGTEKEIEVERF---EKCDVCKGSGAK----------P----GSKPVTCPVCHGTGQV 184 (386)
T ss_pred CCCCC---CEEEEEEEEHHHHhCCeEEEEEEEee---ccCCCCCCCCcC----------C----CCCCccCCCCCCEEEE
Confidence 44566 6666666666 6899999999999 999999999986 1 1346789999999988
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCCC----C
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSGS----A 317 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~~----~ 317 (428)
.... | ...+|+.|+|+|+++ +.+|+.|+|.|.+...+.++|+|+.++.. .+. .+.+. .
T Consensus 185 ~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 256 (386)
T PRK14277 185 RTRQNTPFGRIVNIRTCDRCHGEGKII--------TDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKG 256 (386)
T ss_pred EEEEeccCceEEEEEECCCCCcceeec--------cCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCC
Confidence 6543 2 246999999999999 88999999999999999999999965521 111 11111 2
Q ss_pred CCCCcceEE--ecCcceeEecC
Q 014221 318 SVPDEVFHR--AKGVQLCNTQA 337 (428)
Q Consensus 318 g~p~dl~~r--vkg~~lf~~e~ 337 (428)
+.++||+++ ++.|..|++++
T Consensus 257 ~~~GDL~v~i~v~~h~~F~R~G 278 (386)
T PRK14277 257 GPNGDLYIVIKVKPHPLFKREG 278 (386)
T ss_pred CCCccEEEEEEEecCCCeEEec
Confidence 345788755 58999998877
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.8e-15 Score=155.00 Aligned_cols=144 Identities=20% Similarity=0.473 Sum_probs=107.2
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.+++ |+...+.++| +.|++++|.+++. +.|..|+|+|... .....+|+.|+|+|.+
T Consensus 114 ~~~g~---d~~~~l~lslee~~~G~~~~i~~~r~---~~C~~C~G~G~~~--------------~~~~~~C~~C~G~G~~ 173 (366)
T PRK14294 114 VRAGA---DLRYDLTLPFLEAAFGTEKEIRIQKL---ETCEECHGSGCEP--------------GTSPTTCPQCGGSGQV 173 (366)
T ss_pred CCCCC---CceEEEEeeHHHhcCCeEEEEEeeec---ccCCCCCCccccC--------------CCCcccCCCcCCeEEE
Confidence 34455 6666666666 6899999999999 9999999999861 1246789999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCC----CCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSG----SASVPD 321 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~----~~g~p~ 321 (428)
....| .+++|+.|+|+|+.+ ...|+.|+|.|.+...+.++|.||.++.+ .+. .+.+ ..+.++
T Consensus 174 ~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~G 245 (366)
T PRK14294 174 TQSQGFFSIRTTCPRCRGMGKVI--------VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPG 245 (366)
T ss_pred EEEeeeEEEEeeCCCCCCcCeec--------CcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCC
Confidence 76655 367999999999998 89999999999999999999999976632 111 1111 124467
Q ss_pred cceE--EecCcceeEecC-cE--EEeeecc
Q 014221 322 EVFH--RAKGVQLCNTQA-YQ--CSPAFFA 346 (428)
Q Consensus 322 dl~~--rvkg~~lf~~e~-~~--~~Pi~F~ 346 (428)
||++ +++.|.+|++++ ++ ..+|++.
T Consensus 246 Dl~v~i~v~~h~~F~R~G~DL~~~~~Isl~ 275 (366)
T PRK14294 246 DLYVFLTVEPHEFFERDGNDVHCKVPISFV 275 (366)
T ss_pred cEEEEEEEccCCcceecCCCEEEEEEeCHH
Confidence 8765 458999998876 33 3455443
No 17
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.2e-15 Score=156.67 Aligned_cols=135 Identities=20% Similarity=0.427 Sum_probs=103.6
Q ss_pred ceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecC---
Q 014221 183 DLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDG--- 256 (428)
Q Consensus 183 Dl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G--- 256 (428)
|+...+.++| ++|++++|.+.+. +.|..|+|+|.. . .....+|+.|+|+|++....|
T Consensus 120 di~~~l~~sLee~~~G~~k~i~~~r~---~~C~~C~G~g~~----------~----~~~~~~C~~C~G~G~~~~~~g~~~ 182 (372)
T PRK14300 120 DLKYNLTINLEEAFHGIEKNISFSSE---VKCDTCHGSGSE----------K----GETVTTCDACSGVGATRMQQGFFT 182 (372)
T ss_pred CeeEEEEEEHHHHhCCceEEEEeeec---cccCCCCCcccC----------C----CCCCccCCCccCeEEEEEeeceEE
Confidence 6666666666 6899999999998 999999999976 1 134678999999999876655
Q ss_pred ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCC----CCCCCCcceE--Ee
Q 014221 257 SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSG----SASVPDEVFH--RA 327 (428)
Q Consensus 257 ~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~----~~g~p~dl~~--rv 327 (428)
...+|+.|+|+|+++ ..+|++|+|.|.+...+.++|.||.++.+ .+. .+.+ ..+.++||++ ++
T Consensus 183 ~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v 254 (372)
T PRK14300 183 IEQACHKCQGNGQII--------KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAI 254 (372)
T ss_pred EEEeCCCCCccceEe--------CCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEE
Confidence 357999999999999 89999999999999999999999976632 111 1111 1235678865 55
Q ss_pred cCcceeEecC-cEEEe
Q 014221 328 KGVQLCNTQA-YQCSP 342 (428)
Q Consensus 328 kg~~lf~~e~-~~~~P 342 (428)
+.|..|++++ ++.+-
T Consensus 255 ~~h~~f~R~G~Dl~~~ 270 (372)
T PRK14300 255 KPHDIYKVDGANLHCK 270 (372)
T ss_pred CCCCCeEEecCCEEEE
Confidence 8999998876 44443
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.9e-15 Score=153.83 Aligned_cols=139 Identities=17% Similarity=0.368 Sum_probs=107.3
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|+++++++++. +.|..|+|+|.. + .....+|+.|+|+|.+
T Consensus 128 ~~~g~---d~~~~l~vslee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~v 187 (391)
T PRK14284 128 ARQGA---SKKVHITLSFEEAAKGVEKELLVSGY---KSCDACSGSGAN----------S----SQGIKVCDRCKGSGQV 187 (391)
T ss_pred cCCCC---CeEEEEEEEHHHHhCCeeEEEEEeee---ccCCCCcccccC----------C----CCCCeecCccCCeeEE
Confidence 34455 6677777776 7899999999998 999999999987 2 2356889999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....| ...+|+.|+|+|+++ ..+|+.|+|.|.+...+.|+|+||.++.+ ++.++. ..+.|
T Consensus 188 ~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~ 258 (391)
T PRK14284 188 VQSRGFFSMASTCPECGGEGRVI--------TDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQ-NGAPA 258 (391)
T ss_pred EEEeceEEEEEECCCCCCCCccc--------CCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCC-CCCCC
Confidence 76655 357999999999998 88999999999999999999999976632 222211 12456
Q ss_pred CcceE--EecCcceeEecC-cEEEe
Q 014221 321 DEVFH--RAKGVQLCNTQA-YQCSP 342 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~-~~~~P 342 (428)
+||++ +++.|..|++++ ++.+.
T Consensus 259 GDL~v~i~v~~h~~F~R~G~DL~~~ 283 (391)
T PRK14284 259 GDLYVFIDVEPHPVFERRGDDLILE 283 (391)
T ss_pred CCEEEEEEEecCCCceeecCCEEEE
Confidence 78865 558999998876 44443
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=1.7e-15 Score=155.92 Aligned_cols=195 Identities=22% Similarity=0.344 Sum_probs=128.3
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|.+.+. +.|..|+|+|.. + .....+|+.|+|+|++
T Consensus 118 ~~kg~---di~~~l~vsLee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 177 (380)
T PRK14297 118 PQRGA---DIEYTINLTFEEAVFGVEKEISVTRN---ENCETCNGTGAK----------P----GTSPKTCDKCGGTGQI 177 (380)
T ss_pred CCCCC---CEEEEEEEEHHHhcCCeEEEEEeeee---ccCCCccccccc----------C----CCcCccCCCccCeEEE
Confidence 34566 6666677666 6899999999999 999999999987 2 1246789999999988
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee--------eeeecCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST--------RKVSATSGS 316 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~--------~~v~a~~~~ 316 (428)
.... | ...+|+.|+|+|+++ +.+|..|+|.|.+...+.++|+||.++. +++... ..
T Consensus 178 ~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~-~~ 248 (380)
T PRK14297 178 RVQRNTPLGSFVSTTTCDKCGGSGKVI--------EDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHG-KN 248 (380)
T ss_pred EEEEEcCCceeEEEEeCCCCCCCceEc--------CCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCC-CC
Confidence 6543 2 357999999999998 8999999999999999999999996552 122211 01
Q ss_pred CCCCCcceEE--ecCcceeEecC-cEE--EeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEec
Q 014221 317 ASVPDEVFHR--AKGVQLCNTQA-YQC--SPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPV 383 (428)
Q Consensus 317 ~g~p~dl~~r--vkg~~lf~~e~-~~~--~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPV 383 (428)
.+.++||++. ++.|..|++++ ++. .+|++. .+|..+...+ +..+ ..+++ .++..++++ ++|.
T Consensus 249 ~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~--eAl~G~~~~i~~ldg~~~v~ip~---g~~~g~~~ri~g~G~p~ 323 (380)
T PRK14297 249 GGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFA--KAALGTEIKVPTVDGEVKYEVPA---GTQPGTVFRLKGKGVPR 323 (380)
T ss_pred CCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHH--HHhCCCcEEEEcCCCcEEEEECC---CcCCCCEEEEcCCCcCC
Confidence 2345788654 58999998766 333 345433 2233332111 1111 12222 133333332 5665
Q ss_pred eeEEEeecCceeEEEEEecCce
Q 014221 384 TRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 384 TeV~y~~~gk~~~~yVyG~e~~ 405 (428)
.. -.-+|++|+.+.+-++..
T Consensus 324 ~~--~~~~GDL~v~~~v~~P~~ 343 (380)
T PRK14297 324 VN--STGRGNQYVTVIVDIPKK 343 (380)
T ss_pred CC--CCCCCcEEEEEEEEcCCC
Confidence 32 123688898888877653
No 20
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=9e-15 Score=151.25 Aligned_cols=194 Identities=19% Similarity=0.336 Sum_probs=129.7
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| ++|++++|++.+. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 143 ~~~g~---di~~~l~ltLee~~~G~~~~v~~~~~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 202 (392)
T PRK14279 143 PRRGN---DLETETTLDFVEAAKGVTMPLRLTSP---APCTTCHGSGAR----------P----GTSPKVCPTCNGSGVI 202 (392)
T ss_pred CCCCC---CeEEEEEEEHHHHhCCeEEEEeeecc---ccCCCCcccccc----------C----CCCCCCCCCCcceEEE
Confidence 34566 6677777766 6899999999999 999999999987 2 1346889999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....| ..++|+.|+|+|+++ +.+|..|+|.|.+...+.++|+||.++.+ ++.... ..+.+
T Consensus 203 ~~~~g~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~ 273 (392)
T PRK14279 203 SRNQGAFGFSEPCTDCRGTGSII--------EDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGL-RGAPS 273 (392)
T ss_pred EEEecceEEEEecCCCCceeEEe--------CCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCC-CCCCC
Confidence 77665 468999999999999 89999999999999999999999976532 222110 11334
Q ss_pred CcceEE--ecCcceeEecC-cEEE--eeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEeceeEE
Q 014221 321 DEVFHR--AKGVQLCNTQA-YQCS--PAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPVTRVT 387 (428)
Q Consensus 321 ~dl~~r--vkg~~lf~~e~-~~~~--Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPVTeV~ 387 (428)
+||++. ++.|..|++++ ++.+ +|++. .+|..+...+ +..+ .++++ .++..+.|+ ++|...
T Consensus 274 GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~--eAl~G~~~~v~~ldg~i~v~Ip~---g~~~g~~iri~g~G~p~~~-- 346 (392)
T PRK14279 274 GDLYVTVHVRPDKVFGRDGDDLTVTVPVSFT--ELALGSTLSVPTLDGPVGVKVPA---GTADGRILRVRGRGVPKRS-- 346 (392)
T ss_pred CCEEEEEEEecCCcceeecCcEEEEEEccHH--HHcCCceEEEEcCCceEEEEECC---CCCCCCEEEECCCCCCCCC--
Confidence 787654 58999998876 3333 44433 2333332111 1111 12222 122333332 556421
Q ss_pred EeecCceeEEEEEecCce
Q 014221 388 MTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 388 y~~~gk~~~~yVyG~e~~ 405 (428)
.-+|++|+-+.+-++.+
T Consensus 347 -~~~GDL~I~~~v~~P~~ 363 (392)
T PRK14279 347 -GGAGDLLVTVKVAVPPN 363 (392)
T ss_pred -CCCCCEEEEEEEECCCC
Confidence 23588888887777654
No 21
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.60 E-value=4.6e-15 Score=151.22 Aligned_cols=198 Identities=21% Similarity=0.378 Sum_probs=128.1
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| ++|+++++.+++. +.|..|+|+|... .....+|..|+|+|.+
T Consensus 113 ~~~~~---d~~~~l~vsLee~~~G~~~~i~~~r~---~~C~~C~G~G~~~--------------~~~~~~C~~C~G~G~~ 172 (354)
T TIGR02349 113 PRRGE---DLRYDLELTFEEAVFGVEKEIEIPRK---ESCETCHGTGAKP--------------GTDPKTCPTCGGTGQV 172 (354)
T ss_pred CCCCC---CeEEEEEEEHHHHhCCeeEEEEeecC---CcCCCCCCCCCCC--------------CCCCccCCCCCCeeEE
Confidence 34555 5566666655 6899999999999 9999999999761 1246789999999998
Q ss_pred EEecC-------ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCCC----C
Q 014221 252 AHKDG-------SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSGS----A 317 (428)
Q Consensus 252 ~~~~G-------~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~~----~ 317 (428)
....+ ...+|+.|+|+|+.+ +.+|+.|+|.|.+...+.++|+|+.++.+ .+. .+.+. .
T Consensus 173 ~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 244 (354)
T TIGR02349 173 RRQQGTPFGFFQQQQTCPTCGGEGKII--------KEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENG 244 (354)
T ss_pred EEEEeccCCceEEEEecCCCCCcceec--------CCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCC
Confidence 75542 246999999999998 88999999999999999999999976632 111 11111 1
Q ss_pred CCCCcceE--EecCcceeEecC-cEEEeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEeceeE
Q 014221 318 SVPDEVFH--RAKGVQLCNTQA-YQCSPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPVTRV 386 (428)
Q Consensus 318 g~p~dl~~--rvkg~~lf~~e~-~~~~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPVTeV 386 (428)
+.++||++ +++.|..|++++ ++...+.++...+|..+...+ +... ..+++ .++..+.++ ++|...-
T Consensus 245 ~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~---g~~~g~~~~i~g~G~p~~~~ 321 (354)
T TIGR02349 245 GPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPA---GTQSGTVFRLKGKGVPRLRG 321 (354)
T ss_pred CCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECC---cccCCcEEEECCCCcCCCCC
Confidence 33567765 458899998876 444444333333344432111 1111 11221 233333332 5565431
Q ss_pred EEeecCceeEEEEEecCce
Q 014221 387 TMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 387 ~y~~~gk~~~~yVyG~e~~ 405 (428)
.-+|++|+.+.+-++..
T Consensus 322 --~~~GDL~i~~~v~~P~~ 338 (354)
T TIGR02349 322 --NGRGDLLVTVKVETPKN 338 (354)
T ss_pred --CCCCCEEEEEEEECCCC
Confidence 13578888887776643
No 22
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.3e-14 Score=148.88 Aligned_cols=139 Identities=26% Similarity=0.497 Sum_probs=104.9
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| ++|++++|++.+. +.|+.|+|+|.. . .....+|+.|+|+|++
T Consensus 122 ~~~g~---di~~~l~~slee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 181 (369)
T PRK14282 122 ARRGE---DIRYEIEVTLSDLINGAEIPVEYDRY---ETCPHCGGTGVE----------P----GSGYVTCPKCHGTGRI 181 (369)
T ss_pred CCCCC---CeEEEEEEEHHHhcCCeEEEEEeeec---ccCCCCCccCCC----------C----CCCCcCCCCCCCcCEE
Confidence 34566 6666666666 6899999999999 999999999986 2 1346789999999998
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCC----CC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSG----SA 317 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~----~~ 317 (428)
.... | ...+|+.|+|+|+++ +..|+.|+|.|.+...+.|+|+||.++.+ .+. .+.+ ..
T Consensus 182 ~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 253 (369)
T PRK14282 182 REERRSFFGVFVSERTCERCGGTGKIP--------GEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYG 253 (369)
T ss_pred EEEEEccCcceEEEEECCCCCCcceeC--------CCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCC
Confidence 6543 2 357999999999998 88999999999999999999999976632 111 1111 12
Q ss_pred CCCCcceE--EecCcceeEecC-cEEE
Q 014221 318 SVPDEVFH--RAKGVQLCNTQA-YQCS 341 (428)
Q Consensus 318 g~p~dl~~--rvkg~~lf~~e~-~~~~ 341 (428)
+.++||++ +++.|..|++++ ++.+
T Consensus 254 ~~~GDl~i~i~v~~h~~F~r~G~DL~~ 280 (369)
T PRK14282 254 GPYGDLYVIVRVRPDPRFKRSGSDLIY 280 (369)
T ss_pred CCCCCEEEEEEEecCCcEEEecCCEEE
Confidence 34578765 458999998876 4443
No 23
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=7.6e-15 Score=151.06 Aligned_cols=140 Identities=21% Similarity=0.431 Sum_probs=103.3
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+..++.++| +.|+.+++.+++. +.|+.|+|+|... .....+|+.|+|+|++
T Consensus 116 ~~kg~---di~~~l~vsLed~~~G~~~~i~~~r~---~~C~~C~G~G~~~--------------~~~~~~C~~C~G~G~~ 175 (378)
T PRK14283 116 PQRGA---DIYTEVEITLEEAASGVEKDIKVRHT---KKCPVCNGSRAEP--------------GSEVKTCPTCGGTGQV 175 (378)
T ss_pred ccCCC---CeEEEeeeeHHHHhCCcceEEEeeee---ccCCCCCccccCC--------------CCCCccCCCcCCccEE
Confidence 33455 5566666665 6899999999999 9999999999761 1346789999999998
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee--------eeeecCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST--------RKVSATSGS 316 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~--------~~v~a~~~~ 316 (428)
.... | ...+|+.|+|+|+.+ ..+|..|+|.|.+...+.++|.|+.++. +++.... .
T Consensus 176 ~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~-~ 246 (378)
T PRK14283 176 KQVRNTILGQMMNVTTCPDCQGEGKIV--------EKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGD-R 246 (378)
T ss_pred EEEEeccCceEEEEEECCCCCccceec--------CCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCC-C
Confidence 6543 2 246899999999988 8899999999999999999999996542 2222111 1
Q ss_pred CCCCCcceEE--ecCcceeEecC-cEEEee
Q 014221 317 ASVPDEVFHR--AKGVQLCNTQA-YQCSPA 343 (428)
Q Consensus 317 ~g~p~dl~~r--vkg~~lf~~e~-~~~~Pi 343 (428)
.+.++||+++ ++.+.+|++++ ++..-+
T Consensus 247 ~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~ 276 (378)
T PRK14283 247 GGEPGDLYVVIKVKPHKIFRREGANLYYEK 276 (378)
T ss_pred CCCCccEEEEEEEEcCCCEEEecCCEEEEE
Confidence 2456787654 58899998877 433333
No 24
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.2e-14 Score=148.58 Aligned_cols=189 Identities=19% Similarity=0.311 Sum_probs=126.0
Q ss_pred ceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEec----
Q 014221 183 DLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD---- 255 (428)
Q Consensus 183 Dl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~---- 255 (428)
|+.+.+.++| +.|++++|++++. +.|..|+|+|.. . ....+|+.|+|+|++....
T Consensus 138 di~~~l~vtLee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~-----~~~~~C~~C~G~G~~~~~~~~~~ 199 (397)
T PRK14281 138 DLKIRLKLTLEEIAKGVEKTLKIKKQ---VPCKECNGTGSK----------T-----GATETCPTCHGSGEVRQASKTMF 199 (397)
T ss_pred CEEEEEEeEHHHHhCCeEEEEEEEee---ecCCCCCCcccC----------C-----CCCccCCCCCCCcEEEEEEeccc
Confidence 6666666666 6899999999999 999999999986 2 1357899999999986543
Q ss_pred C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCCCcce
Q 014221 256 G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVPDEVF 324 (428)
Q Consensus 256 G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p~dl~ 324 (428)
| ..++|+.|+|+|+++ +.+|+.|+|.|.+...++++|+||.++.+ ++.... ..+.++||+
T Consensus 200 g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~GDL~ 270 (397)
T PRK14281 200 GQFVNITACPTCGGEGRVV--------KDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGP-RGGAPGDLI 270 (397)
T ss_pred ceEEEEEecCCCcceeeee--------CCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCC-CCCCCCcEE
Confidence 2 256999999999999 89999999999999999999999976632 222110 124567886
Q ss_pred EE--ecCcceeEecC-c--EEEeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEeceeEEEeec
Q 014221 325 HR--AKGVQLCNTQA-Y--QCSPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPVTRVTMTQR 391 (428)
Q Consensus 325 ~r--vkg~~lf~~e~-~--~~~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPVTeV~y~~~ 391 (428)
+. ++.|.+|++++ + +..+|+|.+ +|..+...+ +..+ .++++ .++..++++ ++|...- .-+
T Consensus 271 i~i~~~~h~~F~R~G~DL~~~~~Isl~e--Al~G~~~~i~tldg~i~v~ip~---g~~~G~~~ri~g~G~P~~~~--~~~ 343 (397)
T PRK14281 271 VVIEEKPHELFVRNGDDVIYNLAVSYPD--LVLGTKVEVPTLDGAVKLTIPA---GTQPETMLRIPGKGIGHLRG--SGR 343 (397)
T ss_pred EEEEEcCCCCeEEecCCEEEEEEecHHH--HhcCCeEEeecCCccEEEEeCC---ccCCCcEEEEcCCCCCCCCC--CCC
Confidence 54 58999998876 3 334554442 233322111 1111 12221 123333332 5675331 135
Q ss_pred CceeEEEEEecCce
Q 014221 392 GQSFSFYIIGNSRE 405 (428)
Q Consensus 392 gk~~~~yVyG~e~~ 405 (428)
|++|+-+.+-++..
T Consensus 344 GDL~V~~~V~~P~~ 357 (397)
T PRK14281 344 GDQYVRVNVFVPKE 357 (397)
T ss_pred CCEEEEEEEEcCCC
Confidence 88888888877643
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=5.3e-14 Score=145.05 Aligned_cols=139 Identities=24% Similarity=0.446 Sum_probs=105.1
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|++++|.+++. +.|..|+|+|.. . .....+|+.|+|+|++
T Consensus 126 ~~~g~---di~~~l~vsLee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~ 185 (382)
T PRK14291 126 PVKGE---DIYQTVEISLEEAYTGTTVSLEVPRY---VPCEACGGTGYD----------P----GSGEKVCPTCGGSGEI 185 (382)
T ss_pred ccCCC---CEEEEEEEEHHHhhCCEEEEEEEeee---ccCCCCccccCC----------C----CCCCccCCCCCCceEE
Confidence 33566 6666677666 6899999999999 999999999986 2 1346789999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....+ ..++|+.|+|+|. + +..|+.|+|.|.+...++|+|+||.++.+ ++..+ ...+.+
T Consensus 186 ~~~~g~~~~~~~C~~C~G~G~-~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~g~~~ 255 (382)
T PRK14291 186 YQRGGFFRISQTCPTCGGEGV-L--------REPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAG-RFGGPP 255 (382)
T ss_pred EEecceEEEEecCCCCCCceE-E--------ccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCC-CCCCCC
Confidence 76654 3579999999995 5 68899999999999999999999976632 22211 012457
Q ss_pred CcceE--EecCcceeEecC-cEEEee
Q 014221 321 DEVFH--RAKGVQLCNTQA-YQCSPA 343 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~-~~~~Pi 343 (428)
+||++ +++.|..|++++ ++.+.+
T Consensus 256 GDL~v~i~~~~h~~F~r~G~DL~~~~ 281 (382)
T PRK14291 256 GDLYIIVKVKPHPLFERRGDNLYLDV 281 (382)
T ss_pred ccEEEEEEEccCCCeeeecCCeEEEE
Confidence 78865 458999998876 444443
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=2.7e-14 Score=146.85 Aligned_cols=143 Identities=24% Similarity=0.475 Sum_probs=107.6
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+.+.+.++| +.|+++++.+++. +.|..|+|+|... .....+|+.|+|+|++
T Consensus 114 ~~~g~---di~~~l~vtLee~~~G~~k~i~~~r~---~~C~~C~G~G~~~--------------~~~~~~C~~C~G~G~v 173 (373)
T PRK14301 114 PQAGS---DLRYNLTVSFRQAAKGDEVTLRIPKN---VTCDDCGGSGAAP--------------GTSPETCRHCGGSGQV 173 (373)
T ss_pred CCCCC---CEEEEEeccHHHHhCCceEEEEeeec---ccCCCCCCcccCC--------------CCCCcccCCccCeeEE
Confidence 44566 6676777766 6899999999999 9999999999871 1245789999999998
Q ss_pred EEecC---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCC
Q 014221 252 AHKDG---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVP 320 (428)
Q Consensus 252 ~~~~G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p 320 (428)
....| ...+|+.|+|+|+++ ...|+.|+|.|.+...+.++|+|+.++.+ ++.... ..+.+
T Consensus 174 ~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~~ 244 (373)
T PRK14301 174 RQSQGFFQIAVPCPVCRGEGRVI--------THPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGV-HGGPP 244 (373)
T ss_pred EEEeeeEEEEEeCCCCCceeeec--------CCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCC-CCCCC
Confidence 76665 357999999999998 88999999999999999999999976522 221110 12345
Q ss_pred CcceE--EecCcceeEecC-cE--EEeeecc
Q 014221 321 DEVFH--RAKGVQLCNTQA-YQ--CSPAFFA 346 (428)
Q Consensus 321 ~dl~~--rvkg~~lf~~e~-~~--~~Pi~F~ 346 (428)
+||++ +++.|..|++++ ++ ..+|+|.
T Consensus 245 GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~ 275 (373)
T PRK14301 245 GDLYVVITVEDDKIFQRQGQDLVVTQEISFV 275 (373)
T ss_pred cCEEEEEEEEECCCceeecCcEEEEEEecHH
Confidence 78765 458899998766 33 3455443
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=9.1e-14 Score=142.47 Aligned_cols=138 Identities=23% Similarity=0.463 Sum_probs=103.6
Q ss_pred ceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEec--C-
Q 014221 183 DLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD--G- 256 (428)
Q Consensus 183 Dl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~--G- 256 (428)
|+...+.++| +.|++++|++.+. +.|..|+|+|.. . ....+|+.|+|+|++.... |
T Consensus 124 di~~~l~lsLee~~~G~~~~i~~~r~---~~C~~C~G~g~~----------~-----~~~~~C~~C~G~G~~~~~~~~g~ 185 (365)
T PRK14290 124 DIYTNLDISLEDAYYGTEKRIKYRRN---AMCPDCSGTGAK----------N-----GKLITCPTCHGTGQQRIVRGQGF 185 (365)
T ss_pred CEEEEEEecHHHhcCCEEEEEEeeec---ccCCCCccccCC----------C-----CCCccCCCCCCcCEEEEEeccCe
Confidence 5666666666 6899999999999 999999999976 1 1357899999999876543 2
Q ss_pred ----ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-c--CCCCCCCCCcceE--
Q 014221 257 ----SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-A--TSGSASVPDEVFH-- 325 (428)
Q Consensus 257 ----~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a--~~~~~g~p~dl~~-- 325 (428)
...+|+.|+|.|+++ +.+|+.|+|.|.+...+.++|+||.++.+ .+. . ++...+.|+||++
T Consensus 186 ~~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v 257 (365)
T PRK14290 186 FRMVTVTTCRTCGGRGRIP--------EEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVL 257 (365)
T ss_pred EEEEEEEeCCCCCCceeEc--------cCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEE
Confidence 146899999999998 89999999999999999999999977632 111 1 1112355778765
Q ss_pred EecCcceeEecC-cEEE--eeecc
Q 014221 326 RAKGVQLCNTQA-YQCS--PAFFA 346 (428)
Q Consensus 326 rvkg~~lf~~e~-~~~~--Pi~F~ 346 (428)
+++.|..|++++ ++.+ +|+|.
T Consensus 258 ~v~~h~~F~R~G~DL~~~~~Isl~ 281 (365)
T PRK14290 258 RVNNDPNIQRINDDLYVDQKINFP 281 (365)
T ss_pred EEcCCCCEEEecCCEEEEEEeCHH
Confidence 458999999876 4433 45444
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=9.9e-14 Score=142.41 Aligned_cols=140 Identities=22% Similarity=0.419 Sum_probs=101.6
Q ss_pred CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEE
Q 014221 175 PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLI 251 (428)
Q Consensus 175 p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i 251 (428)
+.++. |+...+.++| ++|.++++.+++. ..|..|+|+|.. .+ .....+|..|+|+|++
T Consensus 109 ~~~g~---d~~~~l~~sLee~~~G~~~~v~~~r~---~~C~~C~G~G~~----------~~---~~~~~~C~~C~G~G~~ 169 (371)
T PRK14292 109 PARGD---DLETEARITLEQARAGEEVEVEVDRL---TECEHCHGSRTE----------PG---GKPPKTCPTCRGAGAV 169 (371)
T ss_pred ccCCC---CeEEEEeccHHHHcCCeEEEEEEEee---ecCCCCcccccC----------CC---CCCCccCCCCCCccEE
Confidence 34455 6666666666 6899999999998 999999999976 11 1236789999999988
Q ss_pred EEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--ee-ecC--CCCCCC
Q 014221 252 AHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KV-SAT--SGSASV 319 (428)
Q Consensus 252 ~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v-~a~--~~~~g~ 319 (428)
.... | ...+|+.|+|.|+.+ ...|+.|.|.|.+...+.++|.||.++.+ .+ ..+ +..++.
T Consensus 170 ~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~ 241 (371)
T PRK14292 170 RAQARTIFGVVETQQPCPTCRGEGQII--------TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG 241 (371)
T ss_pred EEEEeccCceEEEeeecCCCcccceec--------CCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC
Confidence 6432 2 246999999999998 89999999999999999999999976632 11 111 111222
Q ss_pred CCcceEE--ecCcceeEecC-cEEE
Q 014221 320 PDEVFHR--AKGVQLCNTQA-YQCS 341 (428)
Q Consensus 320 p~dl~~r--vkg~~lf~~e~-~~~~ 341 (428)
.+||++. ++.|..|++++ ++..
T Consensus 242 ~GDL~v~i~v~~h~~f~r~g~dL~~ 266 (371)
T PRK14292 242 NGDLYVHIEMEPHPELRREQEHLIY 266 (371)
T ss_pred CCCEEEEEEEecCCccccchhceeE
Confidence 3677654 58899998766 4333
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=4.7e-13 Score=138.12 Aligned_cols=134 Identities=25% Similarity=0.489 Sum_probs=101.0
Q ss_pred CCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEE
Q 014221 176 ALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIA 252 (428)
Q Consensus 176 ~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~ 252 (428)
.++. |+.+.+.++| +.|++++|++++. +.|..|+|+|.. . ......|+.|+|+|++.
T Consensus 125 ~~g~---di~~~l~vsLee~~~G~~~~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~~ 184 (386)
T PRK14289 125 FRGS---DLRVKVKLNLKEISTGVEKKFKVKKY---VPCSHCHGTGAE----------G----NNGSETCPTCKGSGSVT 184 (386)
T ss_pred CCCC---CeEEEEEEEHHHhhCCeEEEEEEEee---cccCCCCCCCCC----------C----CCCCCcCCCCcCeEEEE
Confidence 3455 6666666666 6899999999999 999999999976 1 13467899999999987
Q ss_pred Eec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCCC----CC
Q 014221 253 HKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSGS----AS 318 (428)
Q Consensus 253 ~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~~----~g 318 (428)
... | ...+|+.|+|+|+++ ...|..|+|.|.+...+.++|+||.++.. .+. .+.+. .+
T Consensus 185 ~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~ 256 (386)
T PRK14289 185 RVQNTILGTMQTQSTCPTCNGEGKII--------KKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGG 256 (386)
T ss_pred EEEecccceEEEEEecCCCCcccccc--------CcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCC
Confidence 553 3 357999999999998 88999999999999999999999976632 111 11111 23
Q ss_pred CCCcceEEe--cCcceeEecC
Q 014221 319 VPDEVFHRA--KGVQLCNTQA 337 (428)
Q Consensus 319 ~p~dl~~rv--kg~~lf~~e~ 337 (428)
.++||++.+ +.+..|++++
T Consensus 257 ~~GDL~v~v~v~~~~~f~r~g 277 (386)
T PRK14289 257 VNGDLLVVIEEEPHPELIRDE 277 (386)
T ss_pred CCccEEEEEEEecCCcccccc
Confidence 467887654 7777887655
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=7e-13 Score=136.41 Aligned_cols=191 Identities=19% Similarity=0.348 Sum_probs=121.3
Q ss_pred ceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEec----
Q 014221 183 DLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD---- 255 (428)
Q Consensus 183 Dl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~---- 255 (428)
|+...+.++| +.|+++++++++. +.|..|+|+|.. . .....+|+.|+|+|++....
T Consensus 118 di~~~l~vsLee~~~G~~k~i~~~r~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~~~~~~~~~ 180 (374)
T PRK14293 118 DLRYDLKLDFREAIFGGEKEIRIPHL---ETCETCRGSGAK----------P----GTGPTTCSTCGGAGQVRRATRTPF 180 (374)
T ss_pred CeEEEEEeeHHHHhCCceEEEEeecc---ccCCCCCCcCCC----------C----CCCCeeCCCCCCcceEEEEEecCc
Confidence 4444455544 5899999999998 999999999986 2 13467899999999886543
Q ss_pred C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeee--eee-cCCCC----CCCCCcceE
Q 014221 256 G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTR--KVS-ATSGS----ASVPDEVFH 325 (428)
Q Consensus 256 G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~--~v~-a~~~~----~g~p~dl~~ 325 (428)
| ...+|+.|+|.|+++ +.+|..|+|.|.+...+.++|+||.++.. .+. .+.+. .+.++||++
T Consensus 181 g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v 252 (374)
T PRK14293 181 GSFTQVSECPTCNGTGQVI--------EDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYV 252 (374)
T ss_pred ceEEEEeeCCCCCcceeEe--------ccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEE
Confidence 2 246999999999998 88999999999999999999999965521 111 11111 123567765
Q ss_pred E--ecCcceeEecC---cEEEeeeccchhhhchhhHHH--HHhh--ccCCCCceeeecceEEE----EEeceeEEEeecC
Q 014221 326 R--AKGVQLCNTQA---YQCSPAFFADSFFLNKFSSEV--IAER--AHVPPTARIICERHTIS----VVPVTRVTMTQRG 392 (428)
Q Consensus 326 r--vkg~~lf~~e~---~~~~Pi~F~d~~~l~~~sq~l--I~eh--~~~~~~~RIl~QR~tI~----~IPVTeV~y~~~g 392 (428)
. ++.+..|++++ +...+|+|.+ +|..+...+ +..+ ..+++ .++..+.++ ++|...-. .-+|
T Consensus 253 ~v~v~~~~~f~r~g~DL~~~~~Isl~e--Al~G~~~~i~~ldG~~~i~ip~---~~~~g~~~ri~g~G~p~~~~~-~~~G 326 (374)
T PRK14293 253 YLFVKNDPEFRRDGINILSEIKISYLQ--AILGDTLEVDTVDGPVELTIPA---GTQPNTVLTLENKGVPRLGNP-VARG 326 (374)
T ss_pred EEEEeCCCccChhhhceEEEeccCHHH--HhCCCEEEecCCCCCEEEEeCC---CCCCCCEEEECCCCCCCCCCC-CCcC
Confidence 4 57888898766 3334554442 233332111 1111 12222 123333333 56654311 1257
Q ss_pred ceeEEEEEecCc
Q 014221 393 QSFSFYIIGNSR 404 (428)
Q Consensus 393 k~~~~yVyG~e~ 404 (428)
++|+-+.+-++.
T Consensus 327 DL~v~~~v~~P~ 338 (374)
T PRK14293 327 DHLITVKVKIPT 338 (374)
T ss_pred CEEEEEEEECCC
Confidence 888888777664
No 31
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-13 Score=135.26 Aligned_cols=188 Identities=23% Similarity=0.388 Sum_probs=127.6
Q ss_pred ccCCHHHHHHHHHHHHhccCccCCCccceeEEEEeeeeeeEEEEEeeeeeeeccccccccCcCCCCCCC-----CCCCCC
Q 014221 103 QILDEVEIRELLIDHVGHRCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERETISETEPYLGGNIDGK-----DNGPAL 177 (428)
Q Consensus 103 ~~lsE~eaReal~~~v~~~cc~gs~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~ePy~g~~vdg~-----~~gp~~ 177 (428)
.+++=+|+|+|+..-+..+ -|.+.+.+.|++..|.+..-|+|.||.|+|.|+++.+.+.-.-..|+-. ...-.+
T Consensus 34 ~ii~~~e~R~A~~~es~~p-s~kpp~vk~~v~~rIp~~t~~~~~~~s~~e~~~~ee~~real~~~~~~~cC~~S~~ag~l 112 (406)
T KOG2813|consen 34 DIIPFFECREALEKESKRP-SWKPPTVKKMVFDRIPPSTSIHYILESFTEARSTEEATREALFAAMSEACCSLSGGAGAL 112 (406)
T ss_pred cccchhhhhhhcccccCCc-ccCCCcccccccccCCccccccccccccchhcccHHHHHHHHHHHhhchhhhcCCCcccc
Confidence 4566699999999988876 8888899999999999999999999999999999876654333333321 112234
Q ss_pred CCcccceeeeeeeeecCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCC------ccccC----------ccccc
Q 014221 178 GTWELDLRSQFPVLFVPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEP------EYYKE----------KQMSQ 241 (428)
Q Consensus 178 g~WevDl~~~lp~~F~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~------g~~~~----------~~~~~ 241 (428)
.+|++ ++..--+|+.. +...+.|.++.+..|..|+--|.+.|.+|.+-+-. +...+ .-...
T Consensus 113 ~i~~~--e~~~~~~~~l~-tfveer~~~~q~~PfT~~~~dG~~hg~~prlw~~d~~~~gp~mf~~~~~~~~vphs~~v~~ 189 (406)
T KOG2813|consen 113 SIWDF--EVMPGHLFVLQ-TFVEERPGSSQINPFTACNSDGTIHGFHPRLWGTDKCSRGPGMFSGVAHPAVVPHSMIVTF 189 (406)
T ss_pred cceeh--hcCcceEEeee-eeeccccccceecccccCCcCCcccccCccccccccccCCCCcccccccceeccchHhhhh
Confidence 55654 33222245443 23456677888899999999998888888775411 10000 01123
Q ss_pred CCccccccEEEEec-----------CccccCCCCCC-----ccE-EeCcCCCCCCcccCCCCCCCceeEE
Q 014221 242 CFNCYGRGLIAHKD-----------GSDTICTKCNG-----KGT-IPCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 242 C~~C~GsG~i~~~~-----------G~~~~C~~C~G-----~G~-~~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
|..|.|+|...... |+...|+.|-| -|. .+|-.|+|+|++.|++|+|.|....
T Consensus 190 ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C 259 (406)
T KOG2813|consen 190 CHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC 259 (406)
T ss_pred hhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence 66777776543211 23467777776 222 3699999999999999999997653
No 32
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.2e-13 Score=133.24 Aligned_cols=249 Identities=17% Similarity=0.287 Sum_probs=154.7
Q ss_pred cceeccCCHHHHHHHHHHHHhccCccCCCccceeEEEEeeeeeeEEEEEeeeeeeeccccccccCcCCCCCCCCCCCCCC
Q 014221 99 EFQGQILDEVEIRELLIDHVGHRCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERETISETEPYLGGNIDGKDNGPALG 178 (428)
Q Consensus 99 ~~~~~~lsE~eaReal~~~v~~~cc~gs~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~ePy~g~~vdg~~~gp~~g 178 (428)
.+.+++|+++|.|++|++|-+.-= -+..++... -. + .-|.- +.+..-.++++ +
T Consensus 48 ~~AyevLsd~ekr~~yD~~g~~~~-~~g~~~~g~--~~---f-------~~~F~----------~g~~~~~~~~r----g 100 (337)
T KOG0712|consen 48 SQAYEVLSDPEKREIYDQYGEEGL-QGGGGGGGF--GG---F-------SQFFG----------FGGNGGRGRQR----G 100 (337)
T ss_pred HHHHHHhcCHHHHHHHHhhhhhhh-cccCCCCCC--cc---H-------HHhcc----------CCCcCcccccc----C
Confidence 566899999999999999965521 111111111 11 1 11111 22221122233 4
Q ss_pred C-cccceeeeeeeeecCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEec--
Q 014221 179 T-WELDLRSQFPVLFVPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD-- 255 (428)
Q Consensus 179 ~-WevDl~~~lp~~F~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~-- 255 (428)
. -..+|.++|+.+| .|+.+++.++++ ..|..|+|+|.. + .....|..|.|+|..++..
T Consensus 101 ~~~~~~~~~~Le~~y-~G~s~kl~l~~~---~iCs~C~GsGgk----------s-----g~~~~C~~C~GsGv~~~~~~~ 161 (337)
T KOG0712|consen 101 KDVVHQLKVTLEELY-MGKSKKLFLSRN---FICSKCSGSGGK----------S-----GSAPKCTTCRGSGVQTRTRQM 161 (337)
T ss_pred CCceEEEEEEHHHhh-cCCccceecccC---ccCCcCCCCCCC----------C-----CCCCCCCCCCCCCceeEEEec
Confidence 4 1226666666666 567889999999 999999999987 2 1345799999999987553
Q ss_pred C------ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee------eeeecCCCCCCCCCcc
Q 014221 256 G------SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST------RKVSATSGSASVPDEV 323 (428)
Q Consensus 256 G------~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~------~~v~a~~~~~g~p~dl 323 (428)
| .+.+|..|+|.|..+ +.++.|++|.|.+.+...+.+.|+++...- .++.+.....-.|.|+
T Consensus 162 gPg~~qs~q~~C~~C~G~G~~~------~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~ 235 (337)
T KOG0712|consen 162 GPGMVQSPQLVCDSCNGSGETI------SLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDV 235 (337)
T ss_pred cccccccceeEeccCCCccccc------cccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccE
Confidence 2 357999999999875 458899999999999999999999996541 1222211112346776
Q ss_pred eEEe--cCcceeEecC-cEEEeeeccchhhhchhhHHHHHhh-----ccC-CCCceeeecceEEE----EEeceeEEEee
Q 014221 324 FHRA--KGVQLCNTQA-YQCSPAFFADSFFLNKFSSEVIAER-----AHV-PPTARIICERHTIS----VVPVTRVTMTQ 390 (428)
Q Consensus 324 ~~rv--kg~~lf~~e~-~~~~Pi~F~d~~~l~~~sq~lI~eh-----~~~-~~~~RIl~QR~tI~----~IPVTeV~y~~ 390 (428)
++.+ +.|..|.+.. .+..+........+..+ ++.+. | ..+ .+..+||.--.+++ ++|++.-.
T Consensus 236 vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~-~~~~~-~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--- 310 (337)
T KOG0712|consen 236 VLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGF-QRVWE-TLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--- 310 (337)
T ss_pred EEEecccccccceecccccceeeecchhhccccc-eEEEE-ccCCceEEEecCCCceeChhHEEeecCCCcccccCC---
Confidence 5444 6789997763 44444321111223221 12222 2 122 23445555444443 78998865
Q ss_pred cCceeEEEEEecCc
Q 014221 391 RGQSFSFYIIGNSR 404 (428)
Q Consensus 391 ~gk~~~~yVyG~e~ 404 (428)
+|++|+.|-+-|..
T Consensus 311 ~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 311 KGDLYIKFEVKFPK 324 (337)
T ss_pred CCcEEEEEEEEcCC
Confidence 99999999887765
No 33
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.87 E-value=2.9e-09 Score=83.86 Aligned_cols=47 Identities=36% Similarity=0.856 Sum_probs=35.0
Q ss_pred cccccCCccccccEEEEec----C---ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCc
Q 014221 237 KQMSQCFNCYGRGLIAHKD----G---SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSG 290 (428)
Q Consensus 237 ~~~~~C~~C~GsG~i~~~~----G---~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G 290 (428)
....+|+.|+|+|++.... + ..++|+.|+|+|+++ + +++|++|+|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~------~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E------KDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T------SSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C------CCCCCCCCCcC
Confidence 4678999999999997664 2 367999999999996 3 78899998876
No 34
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.60 E-value=3.6e-08 Score=85.48 Aligned_cols=55 Identities=35% Similarity=0.803 Sum_probs=32.8
Q ss_pred eeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecC----ccccCCCCCCccEEeCcCCCCCCcccCC
Q 014221 209 KKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDG----SDTICTKCNGKGTIPCATCGSRGLIKCR 284 (428)
Q Consensus 209 ~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G----~~~~C~~C~G~G~~~C~tC~G~G~~~C~ 284 (428)
+.|..|+|+|...| +.|+|+|.+....+ ...+|+.|+|+| +..|+
T Consensus 42 v~C~~C~GsG~~~C--------------------~~C~G~G~v~~~~~g~~q~~~~C~~C~G~G-----------k~~C~ 90 (111)
T PLN03165 42 QPCFPCSGTGAQVC--------------------RFCVGSGNVTVELGGGEKEVSKCINCDGAG-----------SLTCT 90 (111)
T ss_pred CCCCCCCCCCCcCC--------------------CCCcCcCeEEEEeCCcEEEEEECCCCCCcc-----------eeeCC
Confidence 78888888887655 44555555433221 133455555544 55688
Q ss_pred CCCCCceeEE
Q 014221 285 KCGGSGSLLT 294 (428)
Q Consensus 285 ~C~G~G~l~~ 294 (428)
.|+|.|.+..
T Consensus 91 ~C~G~G~~~~ 100 (111)
T PLN03165 91 TCQGSGIQPR 100 (111)
T ss_pred CCCCCEEEee
Confidence 8888886553
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=7e-08 Score=96.50 Aligned_cols=204 Identities=17% Similarity=0.258 Sum_probs=135.3
Q ss_pred eccCCHHHHHHHHHHHHhc-cCccCCCccceeEEEEeeeeeeEEEEEeeeeeeecccccc--c---cCcCCCCCCCC--C
Q 014221 102 GQILDEVEIRELLIDHVGH-RCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERETISET--E---PYLGGNIDGKD--N 173 (428)
Q Consensus 102 ~~~lsE~eaReal~~~v~~-~cc~gs~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~--e---Py~g~~vdg~~--~ 173 (428)
.+.-|+.||+.||..+++. |+.-++...++-+|.+|.. + |++...-|.|..-+.. + ++.|...+-.. .
T Consensus 52 ~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~--A--YEiLsd~eKR~~YD~~~~~~~~~~~g~~~~~~~~~~ 127 (288)
T KOG0715|consen 52 SRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISE--A--YEILSDEEKRQEYDVYGLEQHGEFGGNPFDVFLEFF 127 (288)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHH--H--HHHhcCHHHHHHHHHhhhhccccccCCccchHHHhh
Confidence 3456899999999999998 9999998888888888764 6 4555566677764433 1 23321111100 0
Q ss_pred -C-CCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccc
Q 014221 174 -G-PALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGR 248 (428)
Q Consensus 174 -g-p~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~Gs 248 (428)
+ ..+..|+.|..+.+.+.| +.|..+.+.+... ..|..|.|.|.. + +.....|..|.|.
T Consensus 128 ~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~---~~~~t~~~~~~~----------~----~~~~~~~~~~~~~ 190 (288)
T KOG0715|consen 128 GGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVL---SDCETCFGSGAE----------E----GAKRESCKTCSGR 190 (288)
T ss_pred cccccccccCcccccccccCHHHHhhccccceEEEee---cccccccCcCcc----------c----ccccccchhhhCc
Confidence 0 111223334444556667 4566566777766 789999999966 3 3567889999999
Q ss_pred cEEEE--ecCccc-cCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeeeee--eecCCCCCCCCCcc
Q 014221 249 GLIAH--KDGSDT-ICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLSTRK--VSATSGSASVPDEV 323 (428)
Q Consensus 249 G~i~~--~~G~~~-~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~~~--v~a~~~~~g~p~dl 323 (428)
|.... .+.+.. +|..|+|.|.+. ...|..|.|.|++...+.+.|.++.++... +..- + .+. +++
T Consensus 191 ~~~~~~~~~~f~~~~~~~c~~~~~~~--------~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~-~-~~~-~~l 259 (288)
T KOG0715|consen 191 GLVSNPKEDPFILYTCSYCLGRGLVL--------RDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFA-G-HGN-DDL 259 (288)
T ss_pred ccccccccCCcceeecccccccceec--------cchHHHhhcchhhhhheeEEeecCcccccccEEEEe-c-CCc-ceE
Confidence 95543 223222 699999999998 777999999999999999999999776332 2110 1 111 155
Q ss_pred e--EEecCcceeEecC
Q 014221 324 F--HRAKGVQLCNTQA 337 (428)
Q Consensus 324 ~--~rvkg~~lf~~e~ 337 (428)
+ +.|..+..|++++
T Consensus 260 ~v~~~v~~~~~~~r~~ 275 (288)
T KOG0715|consen 260 FVRLIVAKSPSFRREG 275 (288)
T ss_pred EEEEEeccCccccccc
Confidence 5 4457788887665
No 36
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.16 E-value=2.3e-06 Score=74.28 Aligned_cols=46 Identities=37% Similarity=0.923 Sum_probs=34.9
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEEeCcCCCC--CCcccCCCCCCCcee
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGS--RGLIKCRKCGGSGSL 292 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G--~G~~~C~~C~G~G~l 292 (428)
....|..|+|+|.. +|+.|+|+|.+.-.. .+ .-...|+.|+|.|+.
T Consensus 40 ~~v~C~~C~GsG~~--------~C~~C~G~G~v~~~~-~g~~q~~~~C~~C~G~Gk~ 87 (111)
T PLN03165 40 NTQPCFPCSGTGAQ--------VCRFCVGSGNVTVEL-GGGEKEVSKCINCDGAGSL 87 (111)
T ss_pred cCCCCCCCCCCCCc--------CCCCCcCcCeEEEEe-CCcEEEEEECCCCCCccee
Confidence 46789999999962 899999999876332 11 115689999999963
No 37
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.87 E-value=8.4e-06 Score=87.16 Aligned_cols=80 Identities=30% Similarity=0.798 Sum_probs=52.2
Q ss_pred ceeCCccccCcee-----ecCCCCCCCCCcccc--C-------------cccccCCccccccEEEEecCccccCCCCCCc
Q 014221 208 IKKCPDCVGRGNA-----VCPSCNANQEPEYYK--E-------------KQMSQCFNCYGRGLIAHKDGSDTICTKCNGK 267 (428)
Q Consensus 208 V~~C~~C~G~G~~-----~C~~C~G~g~~g~~~--~-------------~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~ 267 (428)
+++|+.|+|+|.+ .|+.|+|+|...... . ..-..|+.|+|.|.+.. ..+|+.|+|+
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v----~~~c~~c~G~ 77 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV----YDTCPECGGT 77 (715)
T ss_pred CccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE----EeecccCCCc
Confidence 4789999999975 588888877432111 0 01235888888887754 3578888888
Q ss_pred cEE-eCcCCCCCCcc----cCCCCCCCce
Q 014221 268 GTI-PCATCGSRGLI----KCRKCGGSGS 291 (428)
Q Consensus 268 G~~-~C~tC~G~G~~----~C~~C~G~G~ 291 (428)
|++ .|..|.-.-.. .|+.|.-+..
T Consensus 78 gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 78 GKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred eeEEeeccccceecCcccccChhHhhCCc
Confidence 876 47777544211 4888876665
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00022 Score=73.58 Aligned_cols=58 Identities=29% Similarity=0.673 Sum_probs=44.7
Q ss_pred eeCCcc---ccCceeecCCCCCCCCCcccc----CcccccCCccccccEEEEecCccccCCCCCCccEEe
Q 014221 209 KKCPDC---VGRGNAVCPSCNANQEPEYYK----EKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP 271 (428)
Q Consensus 209 ~~C~~C---~G~G~~~C~~C~G~g~~g~~~----~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~ 271 (428)
..|+.= .|+.-..|++|+|+|..-... .....+|+.|+|+|.+. ...|..|+|.|++.
T Consensus 146 ~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----~~pC~~C~G~G~v~ 210 (371)
T COG0484 146 STCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----KDPCGKCKGKGRVK 210 (371)
T ss_pred CcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----CCCCCCCCCCCeEe
Confidence 368887 566678999999998654333 12346799999999983 56999999999863
No 39
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.00029 Score=75.70 Aligned_cols=64 Identities=36% Similarity=0.883 Sum_probs=49.5
Q ss_pred eecCCCCCCCCCccccCcccccCCccccccEEEEec--C--------------ccccCCCCCCccEEe----CcCCCCCC
Q 014221 220 AVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD--G--------------SDTICTKCNGKGTIP----CATCGSRG 279 (428)
Q Consensus 220 ~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~--G--------------~~~~C~~C~G~G~~~----C~tC~G~G 279 (428)
+.|+.|+|.|.. -.+.+.|+.|+|+|.+...+ | +...|+.|.|+|++. |++|.|+|
T Consensus 3 ~~C~~C~g~G~i----~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~g 78 (715)
T COG1107 3 KKCPECGGKGKI----VVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTG 78 (715)
T ss_pred ccccccCCCceE----eeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCce
Confidence 479999998855 24567899999999874333 1 246999999999874 99999998
Q ss_pred cc-cCCCCC
Q 014221 280 LI-KCRKCG 287 (428)
Q Consensus 280 ~~-~C~~C~ 287 (428)
+. .|..|.
T Consensus 79 kv~~c~~cG 87 (715)
T COG1107 79 KVLTCDICG 87 (715)
T ss_pred eEEeecccc
Confidence 54 577774
No 40
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.78 E-value=0.0013 Score=51.79 Aligned_cols=54 Identities=35% Similarity=0.837 Sum_probs=30.7
Q ss_pred CCccccCce------eecCCCCCCCCCcccc------CcccccCCccccccEEEEecCccccCCCCCCccEEeCcCCCCC
Q 014221 211 CPDCVGRGN------AVCPSCNANQEPEYYK------EKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGSR 278 (428)
Q Consensus 211 C~~C~G~G~------~~C~~C~G~g~~g~~~------~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~ 278 (428)
|..|+|+|. ..|+.|+|+|...... .....+|+.|+|+|.+. . +..|++|+|.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~--------------~~~C~~C~G~ 65 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E--------------KDPCKTCKGS 65 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T--------------SSB-SSSTTS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C--------------CCCCCCCCCc
Confidence 678888887 3788888877542111 11235588888888774 1 1267777776
Q ss_pred C
Q 014221 279 G 279 (428)
Q Consensus 279 G 279 (428)
|
T Consensus 66 g 66 (66)
T PF00684_consen 66 G 66 (66)
T ss_dssp S
T ss_pred C
Confidence 4
No 41
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.77 E-value=0.0018 Score=61.13 Aligned_cols=37 Identities=27% Similarity=0.694 Sum_probs=26.6
Q ss_pred cCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEE
Q 014221 260 ICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRW 302 (428)
Q Consensus 260 ~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~ 302 (428)
+|+.|+|+|+++ +...+|+.|+|.|++...+.+.+++
T Consensus 101 ~C~~C~G~G~~i------~~~~~C~~C~G~G~v~~~~~~~~k~ 137 (186)
T TIGR02642 101 KCPRCRGTGLIQ------RRQRECDTCAGTGRFRPTVEDLLKS 137 (186)
T ss_pred cCCCCCCeeEEe------cCCCCCCCCCCccEEeeeEEEEEEe
Confidence 566666666666 2236899999999888887766665
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.74 E-value=0.0032 Score=65.67 Aligned_cols=55 Identities=24% Similarity=0.628 Sum_probs=40.5
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|+|+|+..=..|..+.....
T Consensus 157 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 222 (391)
T PRK14284 157 GYKSCDACSGSGANSS--QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGR 222 (391)
T ss_pred eeccCCCCcccccCCC--CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence 4678999999997421 134689999999984 577777777777777777765443
No 43
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.73 E-value=0.0041 Score=64.37 Aligned_cols=54 Identities=31% Similarity=0.708 Sum_probs=39.5
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+..=..|.......
T Consensus 151 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 219 (369)
T PRK14282 151 RYETCPHCGGTGVEPG--SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSG 219 (369)
T ss_pred ecccCCCCCccCCCCC--CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCce
Confidence 4578999999997421 235689999999975 47777777777777777666554
No 44
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.67 E-value=0.0035 Score=64.98 Aligned_cols=54 Identities=28% Similarity=0.720 Sum_probs=37.0
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+..=..|.......
T Consensus 148 ~~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g 216 (372)
T PRK14296 148 LLTNCSKCFGSGAESN--SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKG 216 (372)
T ss_pred eeeccCCCCCCccCCC--CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCce
Confidence 4578999999997521 134689999999975 46666666666555665555443
No 45
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.63 E-value=0.0038 Score=65.17 Aligned_cols=54 Identities=31% Similarity=0.682 Sum_probs=39.7
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|+.|+|+|.... ....+|+.|+|+|.+ .|+.|+|+|+..=..|..+....
T Consensus 172 ~~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g 236 (392)
T PRK14279 172 SPAPCTTCHGSGARPG--TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTG 236 (392)
T ss_pred ccccCCCCccccccCC--CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCe
Confidence 4678999999997521 134789999999975 47777777777777777666544
No 46
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.004 Score=64.70 Aligned_cols=55 Identities=27% Similarity=0.622 Sum_probs=40.3
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|.... ....+|+.|+|+|++ .|+.|+|+|...=..|........
T Consensus 140 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 209 (377)
T PRK14298 140 RAERCSTCSGTGAKPG--TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGK 209 (377)
T ss_pred eeccCCCCCCCcccCC--CCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccE
Confidence 4577999999997421 124689999999964 477777777777777777775543
No 47
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.50 E-value=0.0057 Score=64.53 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=23.2
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGT 269 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~ 269 (428)
....|..|+|+|.. .+...+|+.|+|+|.
T Consensus 149 r~~~C~~C~G~G~~---~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 149 KDVICANCEGHGGP---KDAFVDCKLCNGQGI 177 (421)
T ss_pred ccccccccCCCCCC---CCCCccCCCCCCCCe
Confidence 46789999999963 234678999999995
No 48
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.49 E-value=0.0071 Score=62.65 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=38.4
Q ss_pred eCCc---cccCceeecCCCCCCCCCccccC--cccccCCccccccEEEEecCccccCCCCCCccEEe
Q 014221 210 KCPD---CVGRGNAVCPSCNANQEPEYYKE--KQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP 271 (428)
Q Consensus 210 ~C~~---C~G~G~~~C~~C~G~g~~g~~~~--~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~ 271 (428)
.|.. ..+ -...|+.|+|.|..-...+ ....+|+.|+|+|.+. ...|..|+|.|.+.
T Consensus 145 ~C~G~G~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v~ 205 (369)
T PRK14288 145 SCDGTGAKDK-ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----KTPCQACKGKTYIL 205 (369)
T ss_pred CCCCcccCCC-CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----cccCccCCCcceEE
Confidence 4666 343 4578999999874411000 1124799999999873 45799999999764
No 49
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.46 E-value=0.005 Score=63.69 Aligned_cols=55 Identities=27% Similarity=0.591 Sum_probs=38.7
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|.... ....+|+.|+|+|++ .|+.|.|+|...=..|........
T Consensus 145 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 210 (365)
T PRK14285 145 RNMLCESCLGKKSEKG--TSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS 210 (365)
T ss_pred ecccCCCCCCcccCCC--CCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence 4678999999996421 124689999999965 467777776666666666665543
No 50
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.38 E-value=0.0061 Score=63.34 Aligned_cols=54 Identities=26% Similarity=0.637 Sum_probs=36.7
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|++ .|+.|+|+|+..=..|.-+....
T Consensus 138 ~~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 206 (378)
T PRK14278 138 TAVLCDRCHGKGTAGD--SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDG 206 (378)
T ss_pred eeccCCCCcCccCCCC--CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCce
Confidence 4578999999997421 134689999999964 36666666666656666555444
No 51
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.0077 Score=62.60 Aligned_cols=55 Identities=27% Similarity=0.579 Sum_probs=38.6
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+..=..|........
T Consensus 145 ~~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (380)
T PRK14276 145 REATCHTCNGSGAKPG--TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGH 214 (380)
T ss_pred ccccCCCCcCcccCCC--CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceE
Confidence 4678999999997421 124689999999975 366666666666666666665444
No 52
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.29 E-value=0.0088 Score=62.01 Aligned_cols=54 Identities=26% Similarity=0.546 Sum_probs=36.5
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEEe-----------CcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP-----------CATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~-----------C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|+.|+|+|.... ....+|+.|+|+|++. |+.|+|+|...=..|.......
T Consensus 144 r~~~C~~C~G~g~~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 208 (372)
T PRK14300 144 SEVKCDTCHGSGSEKG--ETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMG 208 (372)
T ss_pred eccccCCCCCcccCCC--CCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCce
Confidence 4678999999997421 1246899999999763 5555555555555555555443
No 53
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.28 E-value=0.0076 Score=62.37 Aligned_cols=55 Identities=29% Similarity=0.619 Sum_probs=39.4
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEEe-----------CcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP-----------CATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~-----------C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|..... ....|+.|+|+|++. |+.|.|+|+..=..|.-......
T Consensus 141 r~~~C~~C~G~G~~~~~--~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 206 (371)
T PRK10767 141 TLVTCDTCHGSGAKPGT--SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR 206 (371)
T ss_pred ecccCCCCCCcccCCCC--CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence 45789999999975211 245899999999763 77777777776667776665543
No 54
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.24 E-value=0.01 Score=61.67 Aligned_cols=55 Identities=25% Similarity=0.571 Sum_probs=38.8
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|+|+|...=..|........
T Consensus 142 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 211 (376)
T PRK14280 142 KEETCDTCHGSGAKPG--TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGK 211 (376)
T ss_pred eeccCCCCCCcccCCC--CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceE
Confidence 4577999999997421 124689999999964 477777777766666766665543
No 55
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.18 E-value=0.011 Score=61.18 Aligned_cols=54 Identities=28% Similarity=0.636 Sum_probs=37.8
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+..=..|.-.+...
T Consensus 137 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 205 (371)
T PRK14287 137 REETCGTCHGSGAKPG--TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKG 205 (371)
T ss_pred eeccCCCCCCcccCCC--CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCee
Confidence 4578999999997521 124689999999964 46666666666666666666444
No 56
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.17 E-value=0.0087 Score=62.06 Aligned_cols=54 Identities=31% Similarity=0.780 Sum_probs=35.0
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+..=..|.-.....
T Consensus 149 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 213 (372)
T PRK14286 149 RLESCVDCNGSGASKG--SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQG 213 (372)
T ss_pred ccccCCCCcCCCcCCC--CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCc
Confidence 4678999999997421 124689999999975 35555555555555555444433
No 57
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.014 Score=60.35 Aligned_cols=53 Identities=34% Similarity=0.722 Sum_probs=37.6
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|+.|+|+|... +...+|+.|+|+|++ .|+.|.|+|...=..|.......
T Consensus 148 r~~~C~~C~G~g~~~---~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 215 (365)
T PRK14290 148 RNAMCPDCSGTGAKN---GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTG 215 (365)
T ss_pred ecccCCCCccccCCC---CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCce
Confidence 457899999999642 345789999999963 46666666666666666665444
No 58
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.14 E-value=0.0095 Score=62.32 Aligned_cols=53 Identities=28% Similarity=0.718 Sum_probs=38.1
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|... +...+|+.|+|+|.+ .|++|.|+|+..=..|..++...
T Consensus 162 r~~~C~~C~G~G~~~---~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 229 (397)
T PRK14281 162 KQVPCKECNGTGSKT---GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEG 229 (397)
T ss_pred eeecCCCCCCcccCC---CCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCc
Confidence 457899999999752 345789999999964 36666666666666666666544
No 59
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0098 Score=62.10 Aligned_cols=53 Identities=30% Similarity=0.719 Sum_probs=34.9
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCcee
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSL 292 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l 292 (428)
....|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+..=..|......
T Consensus 165 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (389)
T PRK14295 165 SQAPCPACSGTGAKNG--TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGS 228 (389)
T ss_pred ccccCCCCcccccCCC--CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCC
Confidence 4577999999997521 124689999999975 3555555555555555544443
No 60
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.016 Score=60.41 Aligned_cols=56 Identities=29% Similarity=0.695 Sum_probs=39.8
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeEEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLLTR 295 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~~~ 295 (428)
..+.|..|+|+|... ......|+.|+|+|++ .|+.|.|+|...=..|...+.....
T Consensus 153 r~~~C~~C~G~G~~~--~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 153 KYVPCSHCHGTGAEG--NNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred eecccCCCCCCCCCC--CCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence 467899999999742 1235789999999976 3777777776666666666655543
No 61
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.99 E-value=0.01 Score=61.52 Aligned_cols=54 Identities=26% Similarity=0.631 Sum_probs=36.8
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|++ .|+.|.|+|+..=..|.......
T Consensus 143 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 207 (373)
T PRK14301 143 KNVTCDDCGGSGAAPG--TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSG 207 (373)
T ss_pred ecccCCCCCCcccCCC--CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCc
Confidence 4578999999997521 124689999999975 46666666666656666555443
No 62
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.97 E-value=0.012 Score=61.32 Aligned_cols=55 Identities=25% Similarity=0.636 Sum_probs=38.4
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|.... ....+|+.|+|+|++ .|+.|.|+|...=..|..+.....
T Consensus 154 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 223 (386)
T PRK14277 154 RFEKCDVCKGSGAKPG--SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGR 223 (386)
T ss_pred eeccCCCCCCCCcCCC--CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcE
Confidence 4577999999997421 124689999999975 366666666666666666665543
No 63
>PRK14297 chaperone protein DnaJ; Provisional
Probab=95.96 E-value=0.016 Score=60.28 Aligned_cols=31 Identities=35% Similarity=0.761 Sum_probs=23.6
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI 270 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~ 270 (428)
....|..|+|+|.... ....+|+.|+|+|++
T Consensus 147 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~ 177 (380)
T PRK14297 147 RNENCETCNGTGAKPG--TSPKTCDKCGGTGQI 177 (380)
T ss_pred eeccCCCcccccccCC--CcCccCCCccCeEEE
Confidence 4577999999997521 135689999999965
No 64
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.017 Score=59.68 Aligned_cols=55 Identities=25% Similarity=0.623 Sum_probs=39.1
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE-----------eCcCCCCCCcccCCCCCCCceeEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI-----------PCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~-----------~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
....|..|+|+|..... ...+|+.|+|+|.+ .|+.|.|+|+..=..|........
T Consensus 143 r~~~C~~C~G~G~~~~~--~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (366)
T PRK14294 143 KLETCEECHGSGCEPGT--SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR 208 (366)
T ss_pred ecccCCCCCCccccCCC--CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence 45779999999975211 24689999999965 477777777777677776665443
No 65
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.62 E-value=0.017 Score=59.90 Aligned_cols=54 Identities=28% Similarity=0.699 Sum_probs=38.5
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCcccCCCCCCCceeE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~C~~C~G~G~l~ 293 (428)
....|..|+|+|.... ....+|+.|+|+|++ .|++|.|+|+..-..|.-.....
T Consensus 142 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 210 (374)
T PRK14293 142 HLETCETCRGSGAKPG--TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQG 210 (374)
T ss_pred ccccCCCCCCcCCCCC--CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCc
Confidence 4578999999997421 134689999999974 37777777776666676666544
No 66
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.36 E-value=0.027 Score=57.84 Aligned_cols=31 Identities=26% Similarity=0.696 Sum_probs=23.1
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI 270 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~ 270 (428)
....|..|+|+|.... ....+|..|+|+|.+
T Consensus 142 r~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~ 172 (354)
T TIGR02349 142 RKESCETCHGTGAKPG--TDPKTCPTCGGTGQV 172 (354)
T ss_pred cCCcCCCCCCCCCCCC--CCCccCCCCCCeeEE
Confidence 4678999999997421 124689999999964
No 67
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.019 Score=57.06 Aligned_cols=48 Identities=27% Similarity=0.728 Sum_probs=30.9
Q ss_pred eeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEE---ecCccccCCCCCCccEEeCcCCC
Q 014221 209 KKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAH---KDGSDTICTKCNGKGTIPCATCG 276 (428)
Q Consensus 209 ~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~---~~G~~~~C~~C~G~G~~~C~tC~ 276 (428)
-.|..|.|.+..+|..|||+ =++.. .++...+|..|+-.|-++|+.|.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS--------------------~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGS--------------------CKVHEEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceEecCCCCCc--------------------eeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence 46777777777666666665 33322 12335688888888888877775
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.09 E-value=0.039 Score=57.37 Aligned_cols=52 Identities=23% Similarity=0.620 Sum_probs=34.3
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEEe---------------CcCCCCCCcccCCCCCCCce
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP---------------CATCGSRGLIKCRKCGGSGS 291 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~---------------C~tC~G~G~~~C~~C~G~G~ 291 (428)
....|+.|+|+|... .....+|+.|+|+|.+. |++|.|+|...=..|.....
T Consensus 145 r~~~C~~C~G~G~~~--~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 211 (378)
T PRK14283 145 HTKKCPVCNGSRAEP--GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHG 211 (378)
T ss_pred eeccCCCCCccccCC--CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCC
Confidence 457799999999642 11356899999999853 55555555555555555544
No 69
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.023 Score=56.52 Aligned_cols=40 Identities=30% Similarity=0.958 Sum_probs=34.9
Q ss_pred ccCCccccccEEEEecCccccCCCCCCccE-----------EeCcCCCCCCcccCCCCC
Q 014221 240 SQCFNCYGRGLIAHKDGSDTICTKCNGKGT-----------IPCATCGSRGLIKCRKCG 287 (428)
Q Consensus 240 ~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~-----------~~C~tC~G~G~~~C~~C~ 287 (428)
..|..|.|.+.+ .|..|+|+-+ ++|+.|.--|..+|+.|.
T Consensus 230 ~~C~~CGg~rFl--------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFL--------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceE--------ecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence 568999999886 8999999854 479999999999999996
No 70
>PRK14292 chaperone protein DnaJ; Provisional
Probab=94.77 E-value=0.068 Score=55.36 Aligned_cols=53 Identities=25% Similarity=0.627 Sum_probs=34.3
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEEe---------------CcCCCCCCcccCCCCCCCce
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP---------------CATCGSRGLIKCRKCGGSGS 291 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~---------------C~tC~G~G~~~C~~C~G~G~ 291 (428)
....|..|+|+|..... ....+|..|+|+|++. |+.|+|.|...=..|.....
T Consensus 138 r~~~C~~C~G~G~~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 205 (371)
T PRK14292 138 RLTECEHCHGSRTEPGG-KPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRG 205 (371)
T ss_pred eeecCCCCcccccCCCC-CCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCC
Confidence 45779999999974210 1246899999999753 55555555555555554443
No 71
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.012 Score=60.34 Aligned_cols=149 Identities=24% Similarity=0.301 Sum_probs=84.6
Q ss_pred ccCCHHHHHHHHHHHHhc-cCccCCCccceeEEEEeeeeeeEEEEEeeeeeeecccccc--ccCcCCCCCCCCCCCCCCC
Q 014221 103 QILDEVEIRELLIDHVGH-RCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERETISET--EPYLGGNIDGKDNGPALGT 179 (428)
Q Consensus 103 ~~lsE~eaReal~~~v~~-~cc~gs~pa~~~~i~~i~~~n~y~Y~LeTF~E~Rs~~~~~--ePy~g~~vdg~~~gp~~g~ 179 (428)
+..|++|++.||...+.. |+.-+.. ..-+|.+|.. + |+.-+=-|.|..-+++ +.+.++..+| |+ +.
T Consensus 14 ~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~--A--yevLsd~ekr~~yD~~g~~~~~~g~~~~---g~--~~ 82 (337)
T KOG0712|consen 14 PDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQ--A--YEVLSDPEKREIYDQYGEEGLQGGGGGG---GF--GG 82 (337)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHH--H--HHHhcCHHHHHHHHhhhhhhhcccCCCC---CC--cc
Confidence 367999999999999777 8864444 2334555543 4 4444555677775555 3343332222 21 10
Q ss_pred cccceeeeeeeeecC----------C--cEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCcccc
Q 014221 180 WELDLRSQFPVLFVP----------H--QETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYG 247 (428)
Q Consensus 180 WevDl~~~lp~~F~~----------G--~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~G 247 (428)
+..+|-. | ....++|.-.+.. .| +.. + ...+....|+.|+|
T Consensus 83 --------f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y------~G-~s~----------k--l~l~~~~iCs~C~G 135 (337)
T KOG0712|consen 83 --------FSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELY------MG-KSK----------K--LFLSRNFICSKCSG 135 (337)
T ss_pred --------HHHhccCCCcCccccccCCCceEEEEEEHHHhh------cC-Ccc----------c--eecccCccCCcCCC
Confidence 2222311 1 1122333222111 11 011 0 00134677999999
Q ss_pred ccEEEEecCccccCCCCCCccEEeCcCCCCCC-----cccCCCCCCCcee
Q 014221 248 RGLIAHKDGSDTICTKCNGKGTIPCATCGSRG-----LIKCRKCGGSGSL 292 (428)
Q Consensus 248 sG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~G-----~~~C~~C~G~G~l 292 (428)
+|-.. +....|+.|.|+|...=.++.|.| ...|..|+|.|..
T Consensus 136 sGgks---g~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~ 182 (337)
T KOG0712|consen 136 SGGKS---GSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET 182 (337)
T ss_pred CCCCC---CCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCcccc
Confidence 98752 345689999999987656666664 6789999999975
No 72
>PRK14291 chaperone protein DnaJ; Provisional
Probab=94.46 E-value=0.029 Score=58.38 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=16.6
Q ss_pred ceeccCCHHHHHHHHHHHHhc
Q 014221 100 FQGQILDEVEIRELLIDHVGH 120 (428)
Q Consensus 100 ~~~~~lsE~eaReal~~~v~~ 120 (428)
..+++|++++.|.+|++|...
T Consensus 50 ~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 50 EAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred HHHHHhcCHHHHHHHhhhccc
Confidence 347899999999999998543
No 73
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=94.08 E-value=0.038 Score=52.33 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=20.3
Q ss_pred CcCCccccCCCCcceeccCCHHHHHHHHHHHHhccC
Q 014221 87 GYFGGDYRAKANEFQGQILDEVEIRELLIDHVGHRC 122 (428)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~lsE~eaReal~~~v~~~c 122 (428)
+|+|=+ -+-.+.+.+++|.+.|.+|+..++
T Consensus 47 ~~~G~~------lllaK~i~D~~Ai~~L~~~a~~~~ 76 (186)
T TIGR02642 47 NPIGIA------ILMAKYMRDAYAIQKLYAHICEQL 76 (186)
T ss_pred CCccHH------HHHHHHhccHHHHHHHHHHHHHhc
Confidence 677743 112233566889999999998865
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.02 E-value=0.14 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=16.3
Q ss_pred eeCCccccCceeecCCCCCCC
Q 014221 209 KKCPDCVGRGNAVCPSCNANQ 229 (428)
Q Consensus 209 ~~C~~C~G~G~~~C~~C~G~g 229 (428)
..|..|.|.+..+|..|+|+.
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~ 120 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSC 120 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcc
Confidence 568888888888888887763
No 75
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.12 Score=51.95 Aligned_cols=21 Identities=19% Similarity=-0.042 Sum_probs=18.3
Q ss_pred eeccCCHHHHHHHHHHHHhcc
Q 014221 101 QGQILDEVEIRELLIDHVGHR 121 (428)
Q Consensus 101 ~~~~lsE~eaReal~~~v~~~ 121 (428)
.+++|+++|.|++|+.+....
T Consensus 91 AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 91 AYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred HHHHhcCHHHHHHHHHhhhhc
Confidence 488999999999999997653
No 76
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=90.11 E-value=0.23 Score=45.33 Aligned_cols=46 Identities=28% Similarity=0.780 Sum_probs=31.9
Q ss_pred ceeecCCCCCCCCCccccCcccccCCccccccEEEEec----CccccCCCCCCccEEeC
Q 014221 218 GNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD----GSDTICTKCNGKGTIPC 272 (428)
Q Consensus 218 G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~----G~~~~C~~C~G~G~~~C 272 (428)
+...|..|.|. ....|..|+|+=.+...+ +...+|+.||-.|-++|
T Consensus 98 ~~~~C~~Cgg~---------rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 98 GGGVCEGCGGA---------RFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCCc---------CeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 44569999886 478999999998886544 12346666666665543
No 77
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=87.65 E-value=4.7 Score=45.89 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=27.0
Q ss_pred ccccCcCCCCCCCCCCCCCCCcccceeeeeeeee---cCCcEEEEEeecC
Q 014221 159 ETEPYLGGNIDGKDNGPALGTWELDLRSQFPVLF---VPHQETRVKVPRS 205 (428)
Q Consensus 159 ~~ePy~g~~vdg~~~gp~~g~WevDl~~~lp~~F---~~G~~~~i~vp~s 205 (428)
..-||--+.-.-....|.+..=.|||..++++.| ++|+.++|++.+.
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~ 683 (871)
T TIGR03835 634 NQLPFISQPPASEYQEPNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRH 683 (871)
T ss_pred cCCCcccCCccccccCCCccccccceEEecccCHHHHhCCCeEEEEEEEe
Confidence 3345554431111223444445567777766655 6899998888665
No 78
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=70.32 E-value=8.8 Score=43.64 Aligned_cols=66 Identities=24% Similarity=0.526 Sum_probs=37.8
Q ss_pred ecCCcEEEEEeec--CCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCccE
Q 014221 192 FVPHQETRVKVPR--SETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGT 269 (428)
Q Consensus 192 F~~G~~~~i~vp~--ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~ 269 (428)
+..|...-+-+++ -+....|+.| | ....|++|...= ..|+......|+.|+-...
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~C---g-------------------~v~~Cp~Cd~~l-t~H~~~~~L~CH~Cg~~~~ 473 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDC---G-------------------YIAECPNCDSPL-TLHKATGQLRCHYCGYQEP 473 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccC---C-------------------CcccCCCCCcce-EEecCCCeeEeCCCCCCCC
Confidence 3566677777776 3445777777 2 245677777652 2343334556666666643
Q ss_pred EeCcCCCCCCcccCCCCCCC
Q 014221 270 IPCATCGSRGLIKCRKCGGS 289 (428)
Q Consensus 270 ~~C~tC~G~G~~~C~~C~G~ 289 (428)
+ ...|+.|.+.
T Consensus 474 ~---------p~~Cp~Cgs~ 484 (730)
T COG1198 474 I---------PQSCPECGSE 484 (730)
T ss_pred C---------CCCCCCCCCC
Confidence 3 3456666554
No 79
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.41 E-value=7.5 Score=40.08 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=35.3
Q ss_pred cccCCCCCCCceeEEEEEEEEEEeeeeeeeeec------CCCCCCCCCcceEEe--cCcceeEec
Q 014221 280 LIKCRKCGGSGSLLTRSFAIVRWKTLSTRKVSA------TSGSASVPDEVFHRA--KGVQLCNTQ 336 (428)
Q Consensus 280 ~~~C~~C~G~G~l~~~~~l~V~~~~~v~~~v~a------~~~~~g~p~dl~~rv--kg~~lf~~e 336 (428)
...|.+|.+.+.......+++.+...+.+.... +.+.-+.|+|++.++ --+..|.+.
T Consensus 185 ~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k 249 (336)
T KOG0713|consen 185 EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERK 249 (336)
T ss_pred hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecC
Confidence 456888888888888889999998776443221 123345666666554 234444443
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.33 E-value=13 Score=40.36 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=12.2
Q ss_pred cCCcEEEEEeecC--CCceeCCcc
Q 014221 193 VPHQETRVKVPRS--ETIKKCPDC 214 (428)
Q Consensus 193 ~~G~~~~i~vp~s--s~V~~C~~C 214 (428)
..|...-+-+|+. +....|..|
T Consensus 196 ~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 196 AAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HcCCcEEEEEeCCcCCCeeEhhhC
Confidence 3455556666753 234556666
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=57.52 E-value=15 Score=41.24 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=11.3
Q ss_pred CCcEEEEEeecC--CCceeCCcc
Q 014221 194 PHQETRVKVPRS--ETIKKCPDC 214 (428)
Q Consensus 194 ~G~~~~i~vp~s--s~V~~C~~C 214 (428)
.|...-+-+++. +....|..|
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~C 387 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDC 387 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhC
Confidence 454555666652 234556666
No 82
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.98 E-value=9.9 Score=44.37 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=24.6
Q ss_pred ccCCccccccEEEEecCccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEe
Q 014221 240 SQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWK 303 (428)
Q Consensus 240 ~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~ 303 (428)
-.|+.|.|.|.+....++... . ..+|+.|+|++.... .|.|+|+
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~----------~--------~~~C~~C~G~R~~~e--~l~v~~~ 780 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPD----------V--------YVPCEVCKGKRYNRE--TLEVKYK 780 (924)
T ss_pred CCCCCCccceEEEEEccCCCC----------c--------ccCCCCcCCceeChH--HHhceeC
Confidence 458888888877543222110 1 456777776665544 3556665
No 83
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=51.63 E-value=30 Score=30.99 Aligned_cols=11 Identities=45% Similarity=1.078 Sum_probs=5.2
Q ss_pred cCCccccccEE
Q 014221 241 QCFNCYGRGLI 251 (428)
Q Consensus 241 ~C~~C~GsG~i 251 (428)
.|..|+..|.+
T Consensus 79 ~C~~Cg~~GH~ 89 (148)
T PTZ00368 79 SCYNCGQTGHI 89 (148)
T ss_pred ccCcCCCCCcc
Confidence 35555554443
No 84
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=51.31 E-value=14 Score=35.32 Aligned_cols=70 Identities=23% Similarity=0.549 Sum_probs=37.7
Q ss_pred eeCCccccCcee--ecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCccEEeCcCC--CCCCcccCC
Q 014221 209 KKCPDCVGRGNA--VCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATC--GSRGLIKCR 284 (428)
Q Consensus 209 ~~C~~C~G~G~~--~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC--~G~G~~~C~ 284 (428)
..|..|...|-. -|+ ...|..|.=.|.+...=-....|..|+-.|-+. ..| ++.....|.
T Consensus 61 ~~C~nCg~~GH~~~DCP---------------~~iC~~C~~~~H~s~~C~~~~~C~~Cg~~GH~~-~dC~P~~~~~~~C~ 124 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP---------------HSICYNCSWDGHRSNHCPKPKKCYNCGETGHLS-RDCNPSKDQQKSCF 124 (190)
T ss_pred cccchhcccCcccccCC---------------hhHhhhcCCCCcccccCCcccccccccccCccc-cccCcccccCccee
Confidence 788888888754 333 122334432333211000124666777666554 344 556667788
Q ss_pred CCCCCceeEE
Q 014221 285 KCGGSGSLLT 294 (428)
Q Consensus 285 ~C~G~G~l~~ 294 (428)
.|...+-+..
T Consensus 125 ~C~s~~H~s~ 134 (190)
T COG5082 125 DCNSTRHSSE 134 (190)
T ss_pred ccCCCccccc
Confidence 8877665443
No 85
>PRK04023 DNA polymerase II large subunit; Validated
Probab=49.48 E-value=12 Score=43.65 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=13.8
Q ss_pred eCcCCCCCC-cccCCCCCCCceeEEEEE
Q 014221 271 PCATCGSRG-LIKCRKCGGSGSLLTRSF 297 (428)
Q Consensus 271 ~C~tC~G~G-~~~C~~C~G~G~l~~~~~ 297 (428)
.|+.|.-.. ...|+.|.-.-.-...+.
T Consensus 653 fCP~CG~~~~~y~CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 653 RCPRCGIEVEEDECEKCGREPTPYSKRK 680 (1121)
T ss_pred eCccccCcCCCCcCCCCCCCCCccceEE
Confidence 344443322 356888876654443333
No 86
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=48.68 E-value=31 Score=30.88 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=5.3
Q ss_pred cCCccccccEE
Q 014221 241 QCFNCYGRGLI 251 (428)
Q Consensus 241 ~C~~C~GsG~i 251 (428)
.|..|...|..
T Consensus 54 ~C~~Cg~~GH~ 64 (148)
T PTZ00368 54 SCYNCGKTGHL 64 (148)
T ss_pred ccCCCCCcCcC
Confidence 45555555443
No 87
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=48.37 E-value=6.5 Score=29.65 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=6.4
Q ss_pred ccccccC-ccccc
Q 014221 412 PSRFCWG-LCPCL 423 (428)
Q Consensus 412 P~~cC~g-~~~~~ 423 (428)
|.-|||- ||||+
T Consensus 23 pggcccccc~cc~ 35 (56)
T TIGR03602 23 PGGCCCCCCCCCF 35 (56)
T ss_pred CCCeEEEeccEEE
Confidence 6665544 44554
No 88
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.87 E-value=8.4 Score=44.93 Aligned_cols=14 Identities=29% Similarity=0.902 Sum_probs=10.0
Q ss_pred cCCCCCCCceeEEE
Q 014221 282 KCRKCGGSGSLLTR 295 (428)
Q Consensus 282 ~C~~C~G~G~l~~~ 295 (428)
.|+.|+|.|.+...
T Consensus 738 ~C~~C~G~G~~~~~ 751 (924)
T TIGR00630 738 RCEACQGDGVIKIE 751 (924)
T ss_pred CCCCCccceEEEEE
Confidence 48888888876643
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=44.90 E-value=15 Score=41.37 Aligned_cols=50 Identities=24% Similarity=0.619 Sum_probs=27.7
Q ss_pred eeecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCccEEeCcCCCCCCcccCCCCCCC
Q 014221 219 NAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGSRGLIKCRKCGGS 289 (428)
Q Consensus 219 ~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~ 289 (428)
...|..|. ...+|+.|.+. ...+.....-.|+.|+-+-.. ...|+.|.+.
T Consensus 381 ~~~C~~Cg-----------~~~~C~~C~~~-l~~h~~~~~l~Ch~Cg~~~~~---------~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCG-----------WVAECPHCDAS-LTLHRFQRRLRCHHCGYQEPI---------PKACPECGST 430 (679)
T ss_pred ceEhhhCc-----------CccCCCCCCCc-eeEECCCCeEECCCCcCCCCC---------CCCCCCCcCC
Confidence 45777773 25678888873 333433334456666554332 2456666554
No 90
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=44.56 E-value=85 Score=31.72 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=24.2
Q ss_pred EEEEEEEeeeeee--eee-cCCCC----CCCCCcceEE--ecCcceeEecC
Q 014221 296 SFAIVRWKTLSTR--KVS-ATSGS----ASVPDEVFHR--AKGVQLCNTQA 337 (428)
Q Consensus 296 ~~l~V~~~~~v~~--~v~-a~~~~----~g~p~dl~~r--vkg~~lf~~e~ 337 (428)
+.++|+++.++.. .+. .+.+. .+.++|+++. ++.|.+|++++
T Consensus 158 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g 208 (306)
T PRK10266 158 KTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVG 208 (306)
T ss_pred EEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeC
Confidence 5688888865521 111 11111 2345677654 58999998876
No 91
>PRK14873 primosome assembly protein PriA; Provisional
Probab=43.34 E-value=36 Score=38.44 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=13.6
Q ss_pred cCCcEEEEEeec--CCCceeCCcc
Q 014221 193 VPHQETRVKVPR--SETIKKCPDC 214 (428)
Q Consensus 193 ~~G~~~~i~vp~--ss~V~~C~~C 214 (428)
..| ..-+-+++ .+.+..|..|
T Consensus 367 ~~g-qvll~lnRrGyap~l~C~~C 389 (665)
T PRK14873 367 EHG-PVLVQVPRRGYVPSLACARC 389 (665)
T ss_pred hcC-cEEEEecCCCCCCeeEhhhC
Confidence 456 66777776 3345667777
No 92
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=43.06 E-value=19 Score=41.43 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=25.9
Q ss_pred ccCCccccccEEEEecCccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEe
Q 014221 240 SQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWK 303 (428)
Q Consensus 240 ~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~ 303 (428)
-+|..|.|.|.+.....+-.. + ..+|+.|+|+....+ +|.|+.+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpd----------V--------yv~CevC~GkRYn~E--tLev~yk 774 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPD----------V--------YVPCEVCHGKRYNRE--TLEVKYK 774 (935)
T ss_pred cCCccccCCceEEEEeccCCC----------c--------eeeCCCcCCcccccc--eEEEEEC
Confidence 568888888887544321100 1 356777777766554 4556666
No 93
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=42.43 E-value=25 Score=41.19 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=13.7
Q ss_pred cccCCCCCCCceeEEEEEEEEEEe
Q 014221 280 LIKCRKCGGSGSLLTRSFAIVRWK 303 (428)
Q Consensus 280 ~~~C~~C~G~G~l~~~~~l~V~~~ 303 (428)
..+|+.|+|++.... .+.|+|.
T Consensus 761 ~~~C~~C~G~R~~~e--~l~v~~~ 782 (943)
T PRK00349 761 YVPCDVCKGKRYNRE--TLEVKYK 782 (943)
T ss_pred cccCccccCcccccc--ceEEEEC
Confidence 456777777776554 3556665
No 94
>PHA00626 hypothetical protein
Probab=42.33 E-value=22 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=15.2
Q ss_pred CCCCCCccEEeCcCCCC-CCcccCCCCC
Q 014221 261 CTKCNGKGTIPCATCGS-RGLIKCRKCG 287 (428)
Q Consensus 261 C~~C~G~G~~~C~tC~G-~G~~~C~~C~ 287 (428)
||.|+-.-.+.|..|.+ +..-.|+.|.
T Consensus 3 CP~CGS~~Ivrcg~cr~~snrYkCkdCG 30 (59)
T PHA00626 3 CPKCGSGNIAKEKTMRGWSDDYVCCDCG 30 (59)
T ss_pred CCCCCCceeeeeceecccCcceEcCCCC
Confidence 55554444445555555 5566677774
No 95
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.31 E-value=9.4 Score=38.54 Aligned_cols=26 Identities=31% Similarity=0.885 Sum_probs=21.6
Q ss_pred cccCCCCCCccEEeCc-CCCCCCcccCCCCC
Q 014221 258 DTICTKCNGKGTIPCA-TCGSRGLIKCRKCG 287 (428)
Q Consensus 258 ~~~C~~C~G~G~~~C~-tC~G~G~~~C~~C~ 287 (428)
...|+.|++ .|- +|+|-+.+.|..|+
T Consensus 197 ~lvCt~Ch~----~C~~~Csg~~~k~C~kCk 223 (350)
T KOG4260|consen 197 HLVCTACHE----GCLGVCSGESSKGCSKCK 223 (350)
T ss_pred cchhhhhhh----hhhcccCCCCCCChhhhc
Confidence 468999987 465 89999999999997
No 96
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=41.54 E-value=14 Score=36.41 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=22.0
Q ss_pred CcCCCCCCcccCCCCCCCceeEEE--EEEEEEEe
Q 014221 272 CATCGSRGLIKCRKCGGSGSLLTR--SFAIVRWK 303 (428)
Q Consensus 272 C~tC~G~G~~~C~~C~G~G~l~~~--~~l~V~~~ 303 (428)
|-.-.|++..+|++|+|.|++... ++|.=-||
T Consensus 30 y~e~~g~~~vtCPTCqGtGrIP~eqe~qLVALIP 63 (238)
T PF07092_consen 30 YVEFTGRDSVTCPTCQGTGRIPREQENQLVALIP 63 (238)
T ss_pred cccccCCCCCcCCCCcCCccCCccchhcEEEEEe
Confidence 445567888899999999986543 45555555
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.07 E-value=28 Score=37.74 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=31.8
Q ss_pred eCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCccEEeCcCCCCCCcccCCCCCCC
Q 014221 210 KCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGSRGLIKCRKCGGS 289 (428)
Q Consensus 210 ~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~ 289 (428)
...+=.-.....|..|. ...+|+.|.+.= ..|.....-.|+.|+-+-.. ...|+.|.+.
T Consensus 204 flnrrGya~~~~C~~Cg-----------~~~~C~~C~~~l-~~h~~~~~l~Ch~Cg~~~~~---------~~~Cp~C~s~ 262 (505)
T TIGR00595 204 FLNRRGYSKNLLCRSCG-----------YILCCPNCDVSL-TYHKKEGKLRCHYCGYQEPI---------PKTCPQCGSE 262 (505)
T ss_pred EEeCCcCCCeeEhhhCc-----------CccCCCCCCCce-EEecCCCeEEcCCCcCcCCC---------CCCCCCCCCC
Confidence 33333233345788883 356788887753 33433334566666654433 2456666553
No 98
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=35.94 E-value=28 Score=43.49 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=13.4
Q ss_pred cccCCCCCCCceeEEEEEEEEEEe
Q 014221 280 LIKCRKCGGSGSLLTRSFAIVRWK 303 (428)
Q Consensus 280 ~~~C~~C~G~G~l~~~~~l~V~~~ 303 (428)
..+|+.|+|++...+. |.|+|+
T Consensus 1630 ~~~C~~C~G~R~~~e~--L~v~~~ 1651 (1809)
T PRK00635 1630 KRPCPTCSGFRIQPLA--QEVVYE 1651 (1809)
T ss_pred ccCCCCCCCcCCCHHH--HhheeC
Confidence 4566677766655443 556776
No 99
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=34.37 E-value=15 Score=35.13 Aligned_cols=21 Identities=29% Similarity=0.855 Sum_probs=16.4
Q ss_pred CceeCCccccCceeecCCCCCC
Q 014221 207 TIKKCPDCVGRGNAVCPSCNAN 228 (428)
Q Consensus 207 ~V~~C~~C~G~G~~~C~~C~G~ 228 (428)
.|..|..|.+.|. .|.-|+..
T Consensus 141 HV~~C~lC~~kGf-iCe~C~~~ 161 (202)
T PF13901_consen 141 HVYSCELCQQKGF-ICEICNSD 161 (202)
T ss_pred HHHHhHHHHhCCC-CCccCCCC
Confidence 3478999999996 47777765
No 100
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.01 E-value=36 Score=40.94 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=7.4
Q ss_pred CCCCceeeecceE
Q 014221 365 VPPTARIICERHT 377 (428)
Q Consensus 365 ~~~~~RIl~QR~t 377 (428)
|+.+++|+-+.-.
T Consensus 920 F~GDT~IlV~dgg 932 (1337)
T PRK14714 920 FHGDTRILVQDDG 932 (1337)
T ss_pred CCCCcEEEEEcCC
Confidence 4566666555443
No 101
>PF14353 CpXC: CpXC protein
Probab=33.74 E-value=36 Score=29.68 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=6.1
Q ss_pred cCCccccccEE
Q 014221 241 QCFNCYGRGLI 251 (428)
Q Consensus 241 ~C~~C~GsG~i 251 (428)
+|+.|+..+..
T Consensus 3 tCP~C~~~~~~ 13 (128)
T PF14353_consen 3 TCPHCGHEFEF 13 (128)
T ss_pred CCCCCCCeeEE
Confidence 45556555544
No 102
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=33.44 E-value=31 Score=39.88 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=22.2
Q ss_pred CcceEEecCcceeEecCcEEEee---eccchhhhchhhHHHHHh
Q 014221 321 DEVFHRAKGVQLCNTQAYQCSPA---FFADSFFLNKFSSEVIAE 361 (428)
Q Consensus 321 ~dl~~rvkg~~lf~~e~~~~~Pi---~F~d~~~l~~~sq~lI~e 361 (428)
.+|..+..|+.||--+. |. .|.|-.-|....++|+..
T Consensus 835 ~EL~k~~tg~TlYiLDE----PTTGLH~~Di~kLl~VL~rLvd~ 874 (935)
T COG0178 835 KELSKRSTGKTLYILDE----PTTGLHFDDIKKLLEVLHRLVDK 874 (935)
T ss_pred HHHhhccCCCeEEEeCC----CCCCCCHHHHHHHHHHHHHHHhC
Confidence 34455667778875332 53 476655566667777754
No 103
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.69 E-value=44 Score=39.37 Aligned_cols=53 Identities=25% Similarity=0.614 Sum_probs=30.0
Q ss_pred EEEeecCCCceeCCccccCc-eeecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCc
Q 014221 199 RVKVPRSETIKKCPDCVGRG-NAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGK 267 (428)
Q Consensus 199 ~i~vp~ss~V~~C~~C~G~G-~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~ 267 (428)
.++|+-. ...|+.|.-.+ ...|+.|... ......|+.|.-.. ....|+.|+-.
T Consensus 619 ~~eVEVg--~RfCpsCG~~t~~frCP~CG~~-------Te~i~fCP~CG~~~-------~~y~CPKCG~E 672 (1121)
T PRK04023 619 TIEVEIG--RRKCPSCGKETFYRRCPFCGTH-------TEPVYRCPRCGIEV-------EEDECEKCGRE 672 (1121)
T ss_pred ceeeccc--CccCCCCCCcCCcccCCCCCCC-------CCcceeCccccCcC-------CCCcCCCCCCC
Confidence 3555543 37888886654 3478888654 12345677773221 12457777644
No 104
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.96 E-value=33 Score=31.37 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=6.0
Q ss_pred cccCCccccccE
Q 014221 239 MSQCFNCYGRGL 250 (428)
Q Consensus 239 ~~~C~~C~GsG~ 250 (428)
...|+.|++...
T Consensus 130 l~~Cp~C~~~~F 141 (146)
T PF07295_consen 130 LPPCPKCGHTEF 141 (146)
T ss_pred CCCCCCCCCCee
Confidence 344555555543
No 105
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.79 E-value=38 Score=40.72 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=5.7
Q ss_pred ccCCCCCCCc
Q 014221 281 IKCRKCGGSG 290 (428)
Q Consensus 281 ~~C~~C~G~G 290 (428)
..|+.|...-
T Consensus 710 ~~CP~CGtpl 719 (1337)
T PRK14714 710 VECPRCDVEL 719 (1337)
T ss_pred ccCCCCCCcc
Confidence 3577775443
No 106
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=29.25 E-value=52 Score=24.53 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=7.0
Q ss_pred ccCCccccccE
Q 014221 240 SQCFNCYGRGL 250 (428)
Q Consensus 240 ~~C~~C~GsG~ 250 (428)
+.|+.|.|...
T Consensus 2 kPCPfCGg~~~ 12 (53)
T TIGR03655 2 KPCPFCGGADV 12 (53)
T ss_pred CCCCCCCCcce
Confidence 35677766665
No 107
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=28.69 E-value=21 Score=44.53 Aligned_cols=30 Identities=27% Similarity=0.637 Sum_probs=16.2
Q ss_pred ccCCccccccEEEEecC----ccccCCCCCCccE
Q 014221 240 SQCFNCYGRGLIAHKDG----SDTICTKCNGKGT 269 (428)
Q Consensus 240 ~~C~~C~GsG~i~~~~G----~~~~C~~C~G~G~ 269 (428)
-+|+.|.|.|.+..... ...+|+.|+|+..
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 44666666666643322 2346666666553
No 108
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=28.69 E-value=62 Score=23.00 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=4.6
Q ss_pred cCCcccccc
Q 014221 241 QCFNCYGRG 249 (428)
Q Consensus 241 ~C~~C~GsG 249 (428)
+|+.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 355555544
No 109
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=27.48 E-value=54 Score=23.22 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=6.0
Q ss_pred ccCCccccccE
Q 014221 240 SQCFNCYGRGL 250 (428)
Q Consensus 240 ~~C~~C~GsG~ 250 (428)
..|+.|.|+.+
T Consensus 4 ~pCP~CGG~Dr 14 (37)
T smart00778 4 GPCPNCGGSDR 14 (37)
T ss_pred cCCCCCCCccc
Confidence 34666665544
No 110
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=27.15 E-value=21 Score=41.16 Aligned_cols=34 Identities=26% Similarity=0.675 Sum_probs=0.0
Q ss_pred cCCCCCCccE--EeCcCCCCCC-cccCCCCCCCceeE
Q 014221 260 ICTKCNGKGT--IPCATCGSRG-LIKCRKCGGSGSLL 293 (428)
Q Consensus 260 ~C~~C~G~G~--~~C~tC~G~G-~~~C~~C~G~G~l~ 293 (428)
.|+.|+..-. ..|+.|.-.- ...|+.|.-...-.
T Consensus 669 ~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 669 RCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETTSY 705 (900)
T ss_dssp -------------------------------------
T ss_pred cCcccCCccccceeccccccccCccccccccccCccc
Confidence 4444444432 2355555442 45788887664433
No 111
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=26.64 E-value=30 Score=24.90 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=6.0
Q ss_pred ccCCccccccEEE
Q 014221 240 SQCFNCYGRGLIA 252 (428)
Q Consensus 240 ~~C~~C~GsG~i~ 252 (428)
..|+.|.|+.+-.
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 4577777766543
No 112
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=26.45 E-value=1e+02 Score=23.68 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=26.9
Q ss_pred ceeeecCCCCcC---CccccCCCCcceeccCCHHHHHHHHHH
Q 014221 78 QAIVYQGQGGYF---GGDYRAKANEFQGQILDEVEIRELLID 116 (428)
Q Consensus 78 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~lsE~eaReal~~ 116 (428)
..||-.|.-+|| |+.+-..+.+.....||-++|-++|.+
T Consensus 6 ~~iv~~GRfGPYv~~g~~~~slpk~~~~~~itle~a~~ll~~ 47 (61)
T PF13368_consen 6 KPIVKNGRFGPYVKHGKKNASLPKDEDPEEITLEEAVELLAE 47 (61)
T ss_pred CEEEeECCCCceEEECCcccccCCCCCcccCCHHHHHHHHhc
Confidence 445678875555 555555666677789999999886653
No 113
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=26.28 E-value=39 Score=38.00 Aligned_cols=36 Identities=19% Similarity=0.471 Sum_probs=18.4
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEEeCcCCCCCCcccCCCCCC
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIPCATCGSRGLIKCRKCGG 288 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G 288 (428)
+.+-|..|..+-. ...|+.|+-.=. .+.+.|+.|..
T Consensus 14 ~akFC~~CG~~l~-------~~~Cp~CG~~~~--------~~~~fC~~CG~ 49 (645)
T PRK14559 14 NNRFCQKCGTSLT-------HKPCPQCGTEVP--------VDEAHCPNCGA 49 (645)
T ss_pred CCccccccCCCCC-------CCcCCCCCCCCC--------cccccccccCC
Confidence 4556777743321 235666655411 23556666643
No 114
>PF05927 Penaeidin: Penaeidin; InterPro: IPR009226 This family consists of several isoforms of the penaeidin protein, which is specific to shrimps. Penaeidins, a unique family of antimicrobial peptides (AMPs) with both proline and cysteine-rich domains, were initially identified in the hemolymph of the Pacific white shrimp, Penaeus vannamei [].; GO: 0008061 chitin binding, 0005737 cytoplasm; PDB: 1UEO_A 1XV3_A.
Probab=25.97 E-value=35 Score=27.45 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=11.2
Q ss_pred cceeeecCCCC------------cCCccccCCCCcceeccCCHHHHHHHHHHH
Q 014221 77 QQAIVYQGQGG------------YFGGDYRAKANEFQGQILDEVEIRELLIDH 117 (428)
Q Consensus 77 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~lsE~eaReal~~~ 117 (428)
.+|+|.||.|| |||+-|..++-=-.--.|+-.+||.--.+|
T Consensus 12 SFALVCQG~gykggyT~p~~rp~P~g~p~~~~~~C~sC~~i~~~~A~~CC~r~ 64 (73)
T PF05927_consen 12 SFALVCQGQGYKGGYTRPFPRPRPYGRPYGPPPVCNSCYRISFSDARACCRRF 64 (73)
T ss_dssp ------------S-SSSSS---------S---SSTTTTTTS-HHHHHHHHHCC
T ss_pred HHHHhccCccccCCcccccCCCCCCCCCCCCCcccccccccCHHHHHHHHHHh
Confidence 36888888854 344444422111112367888888766655
No 115
>smart00261 FU Furin-like repeats.
Probab=22.83 E-value=63 Score=22.80 Aligned_cols=25 Identities=36% Similarity=0.874 Sum_probs=15.4
Q ss_pred cCCCCCCccEEeCcCCCCCCcccCCCCCC
Q 014221 260 ICTKCNGKGTIPCATCGSRGLIKCRKCGG 288 (428)
Q Consensus 260 ~C~~C~G~G~~~C~tC~G~G~~~C~~C~G 288 (428)
.|..|+ ..|.+|.|.+...|..|..
T Consensus 3 ~C~~C~----~~C~~C~~~~~~~C~~C~~ 27 (46)
T smart00261 3 ECKPCH----PECATCTGPGPDDCTSCKH 27 (46)
T ss_pred cccccc----ccccccCCcCcCcCccCCc
Confidence 345555 3466677766777777753
No 116
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.79 E-value=68 Score=36.17 Aligned_cols=46 Identities=22% Similarity=0.595 Sum_probs=24.5
Q ss_pred eeCCccccC---ceeecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCc
Q 014221 209 KKCPDCVGR---GNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGK 267 (428)
Q Consensus 209 ~~C~~C~G~---G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~ 267 (428)
+.|+.|+.. |.+.|+.|...- ....|+.|+-.= .....-|+.|+.+
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l--------~~~~Cp~CG~~~-----~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSL--------THKPCPQCGTEV-----PVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCC--------CCCcCCCCCCCC-----CcccccccccCCc
Confidence 467777543 566777774321 124677776431 1123456666544
No 117
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=21.97 E-value=44 Score=23.55 Aligned_cols=7 Identities=43% Similarity=1.583 Sum_probs=3.3
Q ss_pred cCCCCCC
Q 014221 260 ICTKCNG 266 (428)
Q Consensus 260 ~C~~C~G 266 (428)
.|+.|+|
T Consensus 21 ~C~~C~G 27 (41)
T PF13453_consen 21 VCPSCGG 27 (41)
T ss_pred ECCCCCe
Confidence 4444444
No 118
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=21.44 E-value=51 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=8.2
Q ss_pred ccCCccccccEE
Q 014221 240 SQCFNCYGRGLI 251 (428)
Q Consensus 240 ~~C~~C~GsG~i 251 (428)
..|..|+|.|..
T Consensus 6 ~~c~~c~g~g~a 17 (95)
T PF03589_consen 6 DSCRRCAGDGAA 17 (95)
T ss_pred CCcCccCCccee
Confidence 457777777754
No 119
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=21.20 E-value=67 Score=37.56 Aligned_cols=26 Identities=31% Similarity=0.934 Sum_probs=18.3
Q ss_pred cccCCCCCCccEEeCcCCCCCCcccCCCCC
Q 014221 258 DTICTKCNGKGTIPCATCGSRGLIKCRKCG 287 (428)
Q Consensus 258 ~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~ 287 (428)
...|-.|+- -|-||.|.|.+.|..|.
T Consensus 534 ~~~C~~ChP----EC~TCnG~G~d~C~~Ca 559 (1177)
T KOG1025|consen 534 SRECERCHP----ECETCNGPGADNCLQCA 559 (1177)
T ss_pred cceecccCh----hhccCCCCCccchhhhh
Confidence 356777765 36678888888887774
No 120
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=20.83 E-value=43 Score=29.70 Aligned_cols=67 Identities=27% Similarity=0.693 Sum_probs=40.1
Q ss_pred eCC--ccccCceeecCCCCCCCCCccccCcccccCCccccc-cEEEEecCccccCCCCCCccEEeC------cCCCCCCc
Q 014221 210 KCP--DCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGR-GLIAHKDGSDTICTKCNGKGTIPC------ATCGSRGL 280 (428)
Q Consensus 210 ~C~--~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~Gs-G~i~~~~G~~~~C~~C~G~G~~~C------~tC~G~G~ 280 (428)
.|. .|.|.|...|..|..-- ..+.=...|+.-.+. +... ....|..|+. .| .+|.|.+.
T Consensus 5 ~C~~~gC~Gp~~~~C~sC~~~~----~~g~Cv~~C~~~~~~~~~~~----~~~~C~~Ch~----~C~~~~~~~~C~Gp~~ 72 (132)
T PF14843_consen 5 QCASDGCWGPGPDQCLSCRNFS----FNGTCVASCPDGYYFDGSYE----DSNTCQPCHP----ECLPSNGSETCTGPGA 72 (132)
T ss_dssp TBGTT-BSSSSTTCBSSBSSEE----ETTEEESSTSSSSSSSSEEE----ETTEEEE--T----TB---TTSSSBSSSST
T ss_pred ccCCCCccCcChhhccCccCcc----cCCcchhhcccccccccccc----cCCcCcccCh----hhCccccCcCcCCCCc
Confidence 456 78899999999997531 111123344443332 2221 1457777776 46 88999999
Q ss_pred ccCCCCCC
Q 014221 281 IKCRKCGG 288 (428)
Q Consensus 281 ~~C~~C~G 288 (428)
..|..|..
T Consensus 73 ~~C~~C~~ 80 (132)
T PF14843_consen 73 DQCLSCAH 80 (132)
T ss_dssp TTBSSBSS
T ss_pred chhhhccc
Confidence 99999974
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.78 E-value=60 Score=37.10 Aligned_cols=52 Identities=21% Similarity=0.486 Sum_probs=32.3
Q ss_pred eeecC--CcEEEEEeecCCCceeCCccccC-------ceeecCCCCCCCCCccccCcccccCCccccc
Q 014221 190 VLFVP--HQETRVKVPRSETIKKCPDCVGR-------GNAVCPSCNANQEPEYYKEKQMSQCFNCYGR 248 (428)
Q Consensus 190 ~~F~~--G~~~~i~vp~ss~V~~C~~C~G~-------G~~~C~~C~G~g~~g~~~~~~~~~C~~C~Gs 248 (428)
++|.+ |=...+....=-.+..|++|... |...|+.|+-.. .....|+.|++.
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~-------~~p~~Cp~Cgs~ 484 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQE-------PIPQSCPECGSE 484 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCC-------CCCCCCCCCCCC
Confidence 45533 33335666665667999999764 566777775542 235667777766
No 122
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.43 E-value=98 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.8
Q ss_pred ccccCCCCcceeccCCHHHHHHHHHHHHh
Q 014221 91 GDYRAKANEFQGQILDEVEIRELLIDHVG 119 (428)
Q Consensus 91 ~~~~~~~~~~~~~~lsE~eaReal~~~v~ 119 (428)
..|+ |+++|+++-|++++..+.|+..++
T Consensus 134 ~~y~-pnA~~Sf~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 134 KYYQ-PNADYSFPNLSKDEYLDYLRKLLA 161 (162)
T ss_pred CCCC-CCCceeccccCHHHHHHHHHHHhc
Confidence 4576 999999999999999999887543
No 123
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=20.01 E-value=2e+02 Score=23.75 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=26.1
Q ss_pred eccCCHHHHHHHHHHHHhc--cC-----------ccCCCccceeEEEEe
Q 014221 102 GQILDEVEIRELLIDHVGH--RC-----------CWGSRPARTWKIHAV 137 (428)
Q Consensus 102 ~~~lsE~eaReal~~~v~~--~c-----------c~gs~pa~~~~i~~i 137 (428)
-+.||++|++++|.+|--. +- .+|-+++.-.+|.+-
T Consensus 15 H~iLs~eE~~~lL~~y~i~~~qLP~I~~~DPv~r~~g~k~GdVvkI~R~ 63 (79)
T PRK09570 15 HEILSEEEAKKLLKEYGIKPEQLPKIKASDPVVKAIGAKPGDVIKIVRK 63 (79)
T ss_pred eEECCHHHHHHHHHHcCCCHHHCCceeccChhhhhcCCCCCCEEEEEEC
Confidence 4589999999999999422 22 567777777777653
Done!