Query 014221
Match_columns 428
No_of_seqs 319 out of 1791
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlt_A Protein YDJ1, mitochond 99.7 8.2E-18 2.8E-22 162.4 12.3 199 174-405 7-236 (248)
2 2ctt_A DNAJ homolog subfamily 99.5 3.5E-15 1.2E-19 125.8 0.9 93 183-301 7-102 (104)
3 1exk_A DNAJ protein; extended 99.1 1.9E-11 6.4E-16 97.5 3.0 73 196-293 2-77 (79)
4 1exk_A DNAJ protein; extended 97.4 6.2E-05 2.1E-09 59.4 2.3 53 237-292 9-62 (79)
5 1nlt_A Protein YDJ1, mitochond 97.3 0.00032 1.1E-08 67.3 6.9 77 238-327 37-130 (248)
6 2ctt_A DNAJ homolog subfamily 97.1 0.00035 1.2E-08 58.2 4.1 50 208-271 45-94 (104)
7 3lz8_A Putative chaperone DNAJ 97.1 0.0013 4.5E-08 65.6 8.8 98 294-405 179-301 (329)
8 3lcz_A YCZA, inhibitor of trap 97.0 0.00031 1E-08 52.3 2.6 29 258-294 9-37 (53)
9 3agx_A DNAJ homolog subfamily 96.7 0.0017 5.8E-08 59.4 5.7 64 281-346 28-104 (181)
10 2bx9_A Anti-trap, AT, tryptoph 96.3 0.0021 7.1E-08 47.8 2.8 25 260-292 11-35 (53)
11 2bx9_A Anti-trap, AT, tryptoph 96.0 0.0039 1.3E-07 46.3 2.9 14 240-253 24-37 (53)
12 3lcz_A YCZA, inhibitor of trap 95.8 0.0051 1.7E-07 45.7 2.9 14 240-253 24-37 (53)
13 3pmq_A Decaheme cytochrome C M 95.6 0.00042 1.4E-08 75.2 -5.5 83 193-289 179-304 (669)
14 2q2g_A HSP40 protein, heat sho 95.1 0.055 1.9E-06 49.2 8.0 56 290-346 36-104 (180)
15 1c3g_A Heat shock protein 40; 82.0 1.7 5.9E-05 38.8 5.3 55 290-346 31-98 (170)
16 3agx_A DNAJ homolog subfamily 64.7 2.8 9.4E-05 37.9 2.0 33 183-220 4-39 (181)
17 3pmq_A Decaheme cytochrome C M 51.1 2.8 9.7E-05 45.5 -0.4 28 237-267 189-220 (669)
18 2jrp_A Putative cytoplasmic pr 33.6 21 0.00071 28.5 2.2 27 260-288 33-59 (81)
19 3i2t_A Epidermal growth factor 31.5 20 0.00068 37.9 2.3 26 258-287 524-549 (551)
20 3j20_Y 30S ribosomal protein S 30.2 30 0.001 24.8 2.4 6 209-214 20-25 (50)
21 1y0p_A Fumarate reductase flav 28.7 4.9 0.00017 41.8 -2.9 10 239-248 33-42 (571)
22 2gu3_A YPMB protein; APC1927, 28.1 89 0.003 26.7 5.5 39 366-404 88-127 (136)
23 2lli_A Protein AIR2; RNA surve 25.1 34 0.0011 28.5 2.2 12 209-220 5-16 (124)
24 1qo8_A Flavocytochrome C3 fuma 24.3 6.1 0.00021 41.1 -3.2 10 239-248 33-42 (566)
25 3nyb_B Protein AIR2; polya RNA 21.9 28 0.00096 27.6 1.0 30 241-270 26-58 (83)
26 2jve_A PROD1; LY-6, three-fing 21.7 19 0.00065 28.0 -0.1 14 405-418 70-83 (91)
No 1
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.74 E-value=8.2e-18 Score=162.43 Aligned_cols=199 Identities=16% Similarity=0.323 Sum_probs=132.5
Q ss_pred CCCCCCcccceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccE
Q 014221 174 GPALGTWELDLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGL 250 (428)
Q Consensus 174 gp~~g~WevDl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~ 250 (428)
++.++. |+.+.+.++| ++|++++|++++. +.|..|+|+|.. ++ . ..+|+.|+|+|+
T Consensus 7 ~~~~g~---d~~~~l~vslee~~~G~~k~i~~~r~---~~C~~C~G~G~~----------~g----~-~~~C~~C~G~G~ 65 (248)
T 1nlt_A 7 GPQRGK---DIKHEISASLEELYKGRTAKLALNKQ---ILCKECEGRGGK----------KG----A-VKKCTSCNGQGI 65 (248)
T ss_dssp -CCBCC---CEEEEEEECTTHHHHCEEEEEEEEEE---EECTTTTTCSBS----------TT----T-CCCCTTSSSSSC
T ss_pred CCCCCC---CEEEEEEecHHHhcCCceEEEEeeEE---EeCCCCcCccCC----------CC----C-CccCCCCCCCcE
Confidence 345567 7777777777 6799999999998 999999999987 32 2 488999999998
Q ss_pred EEEec--C-----ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEEEeeeee--------eeeecCCC
Q 014221 251 IAHKD--G-----SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVRWKTLST--------RKVSATSG 315 (428)
Q Consensus 251 i~~~~--G-----~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~~~~~v~--------~~v~a~~~ 315 (428)
+.... | .+.+|+.|+|+|+++ ..+++|++|+|.|.+...+.|+|+||.++. +++.+.
T Consensus 66 ~~~~~~~g~~~~~~~~~C~~C~G~G~~i------~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~-- 137 (248)
T 1nlt_A 66 KFVTRQMGPMIQRFQTECDVCHGTGDII------DPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA-- 137 (248)
T ss_dssp EEEEEESSSEEEEEECSCTTCSSSSSCC------CTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC--
T ss_pred EEEEEecCceEEEEEEcCCCCCCcCEEe------ccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCC--
Confidence 75432 2 356899999988877 447899999999999999999999996663 233221
Q ss_pred CCCCCCcceE--EecCcceeEecC---cEEEeeeccchhhhchhhHH--HHHhh-ccCC-CCceeeecceEEE----EEe
Q 014221 316 SASVPDEVFH--RAKGVQLCNTQA---YQCSPAFFADSFFLNKFSSE--VIAER-AHVP-PTARIICERHTIS----VVP 382 (428)
Q Consensus 316 ~~g~p~dl~~--rvkg~~lf~~e~---~~~~Pi~F~d~~~l~~~sq~--lI~eh-~~~~-~~~RIl~QR~tI~----~IP 382 (428)
..+.++||++ +++.|.+|++++ ++..||+|.+- |..+.-. -+..+ ..+. +...|++-..+++ +||
T Consensus 138 ~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eA--llG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp 215 (248)
T 1nlt_A 138 PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTA--IAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP 215 (248)
T ss_dssp TTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHH--HHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCB
T ss_pred CCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHH--hcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCc
Confidence 2245778764 558999999877 44556765532 2221100 00111 1111 1112344444444 677
Q ss_pred ceeEEEeecCceeEEEEEecCce
Q 014221 383 VTRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 383 VTeV~y~~~gk~~~~yVyG~e~~ 405 (428)
...-. -+|++|+-|.+=+..+
T Consensus 216 ~~~~~--~~GDL~V~~~V~~P~~ 236 (248)
T 1nlt_A 216 IPKYG--GYGNLIIKFTIKDPEN 236 (248)
T ss_dssp CSSSC--SBCCEEEEEEEECCC-
T ss_pred cCCCC--CcCCEEEEEEEECCCC
Confidence 64321 3688888887777654
No 2
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-15 Score=125.81 Aligned_cols=93 Identities=24% Similarity=0.557 Sum_probs=76.4
Q ss_pred ceeeeeeeeecCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecC---ccc
Q 014221 183 DLRSQFPVLFVPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDG---SDT 259 (428)
Q Consensus 183 Dl~~~lp~~F~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G---~~~ 259 (428)
+|.++|..+| +|++++|.+++. +.|+.|+|+|.. + +....+|+.|+|+|++....| ...
T Consensus 7 ~l~vslee~~-~G~~~~i~~~~~---~~C~~C~G~G~~----------~----g~~~~~C~~C~G~G~~~~~~G~~~~~~ 68 (104)
T 2ctt_A 7 GMELTFNQAA-KGVNKEFTVNIM---DTCERCNGKGNE----------P----GTKVQHCHYCGGSGMETINTGPFVMRS 68 (104)
T ss_dssp CCCCCCSSCC-SSSCTTCCSSCC---EECSSSSSSSSC----------T----TCCCEECSSSSSSCEEEEEETTEEEEE
T ss_pred EEEEEHHHHc-CCCEEEEEeeee---eECCCCcCCccC----------C----CCCCccCCCCCCCEEEEEEeCCEEEEE
Confidence 5555666555 799999999999 999999999987 2 234688999999999876555 257
Q ss_pred cCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEEEEEEEEE
Q 014221 260 ICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLTRSFAIVR 301 (428)
Q Consensus 260 ~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~~~~l~V~ 301 (428)
+|+.|+|+|+++ +++|+.|+|.|.+...+.|+|+
T Consensus 69 ~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~k~l~V~ 102 (104)
T 2ctt_A 69 TCRRCGGRGSII--------ISPCVVCRGAGQAKQKKRSGPS 102 (104)
T ss_dssp ECSSSSSSSEEC--------SSCCSSSSSCSEECCCCSSCCS
T ss_pred ECCcCCCcceEC--------CCcCCCCCCeeEEEEEEEEEEE
Confidence 899999999999 8999999999999887776664
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.12 E-value=1.9e-11 Score=97.50 Aligned_cols=73 Identities=30% Similarity=0.750 Sum_probs=57.7
Q ss_pred cEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecCc---cccCCCCCCccEEeC
Q 014221 196 QETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGS---DTICTKCNGKGTIPC 272 (428)
Q Consensus 196 ~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~---~~~C~~C~G~G~~~C 272 (428)
++++|.|++. +.|+.|+|+|.. + .....+|+.|+|+|.+...+|+ ..+|+.|+|+|+++
T Consensus 2 ~~~~i~~~~~---~~C~~C~G~G~~----------~----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~- 63 (79)
T 1exk_A 2 VTKEIRIPTL---EECDVCHGSGAK----------P----GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI- 63 (79)
T ss_dssp TTTSCCCCCE---EECGGGTTTSBC----------S----SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-
T ss_pred cEEEEEcccc---eECCCCcccccC----------C----CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-
Confidence 3445777777 999999999986 2 1235789999999998654442 46899999999998
Q ss_pred cCCCCCCcccCCCCCCCceeE
Q 014221 273 ATCGSRGLIKCRKCGGSGSLL 293 (428)
Q Consensus 273 ~tC~G~G~~~C~~C~G~G~l~ 293 (428)
+++|+.|+|.|.+.
T Consensus 64 -------~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 64 -------KDPCNKCHGHGRVE 77 (79)
T ss_dssp -------SSBCGGGTTSSEEE
T ss_pred -------CCcCCCCCCeEEEe
Confidence 78999999999875
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.38 E-value=6.2e-05 Score=59.43 Aligned_cols=53 Identities=26% Similarity=0.602 Sum_probs=35.1
Q ss_pred cccccCCccccccEEEEecC-ccccCCCCCCccEEeCcCCCCCCcccCCCCCCCcee
Q 014221 237 KQMSQCFNCYGRGLIAHKDG-SDTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSL 292 (428)
Q Consensus 237 ~~~~~C~~C~GsG~i~~~~G-~~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l 292 (428)
.....|+.|+|+|.+. + ...+|+.|+|+|+++-..-.-....+|+.|+|.|.+
T Consensus 9 ~~~~~C~~C~G~G~~~---~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 62 (79)
T 1exk_A 9 PTLEECDVCHGSGAKP---GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62 (79)
T ss_dssp CCEEECGGGTTTSBCS---SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE
T ss_pred ccceECCCCcccccCC---CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE
Confidence 3567899999999742 2 246899999999875211000012578888888865
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.31 E-value=0.00032 Score=67.29 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=48.5
Q ss_pred ccccCCccccccEEEEecCccccCCCCCCccEE---------------eCcCCCCCCccc--CCCCCCCceeEEEEEEEE
Q 014221 238 QMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTI---------------PCATCGSRGLIK--CRKCGGSGSLLTRSFAIV 300 (428)
Q Consensus 238 ~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~---------------~C~tC~G~G~~~--C~~C~G~G~l~~~~~l~V 300 (428)
....|..|+|+|.. .|...+|+.|+|+|++ .|++|+|+|+.. =..|.-.........
T Consensus 37 r~~~C~~C~G~G~~---~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~--- 110 (248)
T 1nlt_A 37 KQILCKECEGRGGK---KGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE--- 110 (248)
T ss_dssp EEEECTTTTTCSBS---TTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE---
T ss_pred EEEeCCCCcCccCC---CCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEee---
Confidence 35689999999964 4556899999999964 366666666555 555655555443322
Q ss_pred EEeeeeeeeeecCCCCCCCCCcceEEe
Q 014221 301 RWKTLSTRKVSATSGSASVPDEVFHRA 327 (428)
Q Consensus 301 ~~~~~v~~~v~a~~~~~g~p~dl~~rv 327 (428)
...+.-+|++ |+++.-.+++
T Consensus 111 --~~~l~V~Ip~-----G~~~G~~ir~ 130 (248)
T 1nlt_A 111 --RKILEVHVEP-----GMKDGQRIVF 130 (248)
T ss_dssp --EEEEEEEECT-----TCCTTCEEEE
T ss_pred --eEEEEEEECC-----CccCCCEEEE
Confidence 3334445554 5666555665
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.00035 Score=58.23 Aligned_cols=50 Identities=32% Similarity=0.644 Sum_probs=34.9
Q ss_pred ceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEecCccccCCCCCCccEEe
Q 014221 208 IKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKDGSDTICTKCNGKGTIP 271 (428)
Q Consensus 208 V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~G~~~~C~~C~G~G~~~ 271 (428)
...|+.|+|+|.+.-.. | . .....+|+.|+|+|.+. ...|+.|+|.|++.
T Consensus 45 ~~~C~~C~G~G~~~~~~--G---~----~~~~~~C~~C~G~G~~i-----~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINT--G---P----FVMRSTCRRCGGRGSII-----ISPCVVCRGAGQAK 94 (104)
T ss_dssp CEECSSSSSSCEEEEEE--T---T----EEEEEECSSSSSSSEEC-----SSCCSSSSSCSEEC
T ss_pred CccCCCCCCCEEEEEEe--C---C----EEEEEECCcCCCcceEC-----CCcCCCCCCeeEEE
Confidence 47788888888763221 1 1 11246799999999873 46899999999875
No 7
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=97.08 E-value=0.0013 Score=65.63 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=52.6
Q ss_pred EEEEEEEEEeeeee--------eeeecCCCCCCCCCcceEE--ecCcceeEecC---cEEEeeeccchhhhchhhHHHHH
Q 014221 294 TRSFAIVRWKTLST--------RKVSATSGSASVPDEVFHR--AKGVQLCNTQA---YQCSPAFFADSFFLNKFSSEVIA 360 (428)
Q Consensus 294 ~~~~l~V~~~~~v~--------~~v~a~~~~~g~p~dl~~r--vkg~~lf~~e~---~~~~Pi~F~d~~~l~~~sq~lI~ 360 (428)
..+.++|+||.++. +++.++. ..+.++||++. ++.|.+|++++ ++..||.|. ++++.
T Consensus 179 ~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~-~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~---------eAllG 248 (329)
T 3lz8_A 179 TPKTLNVKIPAGVVDGQRIRLKGQGTPGE-NGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPW---------EAALG 248 (329)
T ss_dssp EEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHH---------HHHHC
T ss_pred cceEEEEeCCCCCCCCCEEEEcccccCCC-CCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHH---------HHcCC
Confidence 35678899996552 2222210 12456788755 58999999887 445566544 33343
Q ss_pred hhccCCC-Ccee-------eecceEEE----EEeceeEEEeecCceeEEEEEecCce
Q 014221 361 ERAHVPP-TARI-------ICERHTIS----VVPVTRVTMTQRGQSFSFYIIGNSRE 405 (428)
Q Consensus 361 eh~~~~~-~~RI-------l~QR~tI~----~IPVTeV~y~~~gk~~~~yVyG~e~~ 405 (428)
....++. +.++ .+-..+++ +||.. .-+|++|+-+.+=++.+
T Consensus 249 ~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~----~~rGDL~v~~~V~~P~~ 301 (329)
T 3lz8_A 249 AKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK----THTGDLFAVIKIVMPTK 301 (329)
T ss_dssp EEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS----SCBCCEEEEEEECCCSS
T ss_pred CeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC----CCCCCEEEEEEEECCCC
Confidence 3222221 2221 12222232 66754 34788888777666543
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.02 E-value=0.00031 Score=52.32 Aligned_cols=29 Identities=45% Similarity=0.909 Sum_probs=23.0
Q ss_pred cccCCCCCCccEEeCcCCCCCCcccCCCCCCCceeEE
Q 014221 258 DTICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSLLT 294 (428)
Q Consensus 258 ~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l~~ 294 (428)
+.+|+.|+|+|+++ .++|+.|+|.|.+..
T Consensus 9 ~~~C~~C~GsG~~i--------~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 9 ETTCPNCNGSGREE--------PEPCPKCLGKGVILT 37 (53)
T ss_dssp EEECTTTTTSCEET--------TEECTTTTTSSEEEC
T ss_pred eccCcCCcccccCC--------CCcCCCCCCcEEEEE
Confidence 46888888888888 688888888886653
No 9
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=96.72 E-value=0.0017 Score=59.39 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=45.0
Q ss_pred ccCCCCCCCceeEEEEEEEEEEeeeeee--------eeecCCCCCCCCCcce--EEecCcceeEecC---cEEEeeecc
Q 014221 281 IKCRKCGGSGSLLTRSFAIVRWKTLSTR--------KVSATSGSASVPDEVF--HRAKGVQLCNTQA---YQCSPAFFA 346 (428)
Q Consensus 281 ~~C~~C~G~G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p~dl~--~rvkg~~lf~~e~---~~~~Pi~F~ 346 (428)
.+|..|+|.|.+...+.++|+||.++.+ ++.++ ..+.++||+ ++++.|..|++++ ++..||+|.
T Consensus 28 ~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~--~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~ 104 (181)
T 3agx_A 28 HKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQT--SNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLR 104 (181)
T ss_dssp EEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC--SSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHH
T ss_pred cccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccC--CCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHH
Confidence 4577888899999999999999976632 33221 235677876 4558999999887 444566554
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.32 E-value=0.0021 Score=47.80 Aligned_cols=25 Identities=36% Similarity=0.888 Sum_probs=13.5
Q ss_pred cCCCCCCccEEeCcCCCCCCcccCCCCCCCcee
Q 014221 260 ICTKCNGKGTIPCATCGSRGLIKCRKCGGSGSL 292 (428)
Q Consensus 260 ~C~~C~G~G~~~C~tC~G~G~~~C~~C~G~G~l 292 (428)
+|+.|+|+|+++ ..+|+.|+|.|++
T Consensus 11 ~C~~C~GsG~~~--------~~~C~~C~G~G~v 35 (53)
T 2bx9_A 11 ACPKCERAGEIE--------GTPCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEET--------TEECTTTTTSSEE
T ss_pred cCCCCcceeccC--------CCCCccCCCCccE
Confidence 455555555554 4556666666544
No 11
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=95.99 E-value=0.0039 Score=46.28 Aligned_cols=14 Identities=36% Similarity=0.916 Sum_probs=8.1
Q ss_pred ccCCccccccEEEE
Q 014221 240 SQCFNCYGRGLIAH 253 (428)
Q Consensus 240 ~~C~~C~GsG~i~~ 253 (428)
.+|+.|+|+|.+..
T Consensus 24 ~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 24 TPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEEEC
T ss_pred CCCccCCCCccEEE
Confidence 45666666666543
No 12
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.82 E-value=0.0051 Score=45.67 Aligned_cols=14 Identities=36% Similarity=0.956 Sum_probs=8.8
Q ss_pred ccCCccccccEEEE
Q 014221 240 SQCFNCYGRGLIAH 253 (428)
Q Consensus 240 ~~C~~C~GsG~i~~ 253 (428)
.+|+.|+|+|.+..
T Consensus 24 ~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 24 EPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEEEC
T ss_pred CcCCCCCCcEEEEE
Confidence 55666677666543
No 13
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=95.57 E-value=0.00042 Score=75.18 Aligned_cols=83 Identities=14% Similarity=0.359 Sum_probs=53.4
Q ss_pred cCCcEEEEEeecCCCceeCCccccCceeecCCCCCCCCCccccCcccccCCccccccEEEEec------------C----
Q 014221 193 VPHQETRVKVPRSETIKKCPDCVGRGNAVCPSCNANQEPEYYKEKQMSQCFNCYGRGLIAHKD------------G---- 256 (428)
Q Consensus 193 ~~G~~~~i~vp~ss~V~~C~~C~G~G~~~C~~C~G~g~~g~~~~~~~~~C~~C~GsG~i~~~~------------G---- 256 (428)
..|.+++++|++. ..|..|+|+|.+ +|.+ .....+|+.|+|+....... |
T Consensus 179 ~~G~~k~i~v~~~---~~C~tCHGsGA~-----~Gt~------~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~ 244 (669)
T 3pmq_A 179 GNMLAYTRNLVSI---DTCNSCHSNLAF-----HGGR------YNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQ 244 (669)
T ss_dssp SSSCCCCCCCCCS---HHHHHHHSSCCT-----TTTT------SCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSS
T ss_pred hCCCceEEEeccC---CcCCCCCCCCCc-----CCcc------CcCCccCCCCCCCcccCCccccccceeeeeeccCCCC
Confidence 4688899999999 999999999975 1110 01356777777773211110 1
Q ss_pred ccccCCCCCCccE--------------EeCcCCCCCC-------------cccCCCCCCC
Q 014221 257 SDTICTKCNGKGT--------------IPCATCGSRG-------------LIKCRKCGGS 289 (428)
Q Consensus 257 ~~~~C~~C~G~G~--------------~~C~tC~G~G-------------~~~C~~C~G~ 289 (428)
....|..|+..+. ..|..||... ...|..|++.
T Consensus 245 ~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~~~f~~g~~H~~~~~~~~C~~CH~~ 304 (669)
T 3pmq_A 245 SISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQINFPAGQGHPAQTDNSNCVACHNA 304 (669)
T ss_dssp CTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCSCBTTTTBSSCCCSSSSSHHHHSCH
T ss_pred ccCcchhhcCCccccccccccccCCchhhhhhccCCcccccccCCcccCCCCChhhcCCC
Confidence 1356888877664 2477777432 3569999864
No 14
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=95.14 E-value=0.055 Score=49.18 Aligned_cols=56 Identities=7% Similarity=-0.047 Sum_probs=35.9
Q ss_pred ceeEEEEEEEEEEeeeeee--------eeecCCCCCCCCCcce--EEecCcceeEecC---cEEEeeecc
Q 014221 290 GSLLTRSFAIVRWKTLSTR--------KVSATSGSASVPDEVF--HRAKGVQLCNTQA---YQCSPAFFA 346 (428)
Q Consensus 290 G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p~dl~--~rvkg~~lf~~e~---~~~~Pi~F~ 346 (428)
|.+...+.++|+||.++.+ ++.++ ...+.++||+ ++++.|..|++++ ++..||+|.
T Consensus 36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g-~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~ 104 (180)
T 2q2g_A 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQE-SPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV 104 (180)
T ss_dssp EEEEEEEEEEEEECTTCCTTCEEEETTCSCCS-STTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHH
T ss_pred ceEEeeEEEEEEECCCCcCCcEEEEeeccCCC-CCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHH
Confidence 4556678899999976632 22221 1134567876 4558999999877 445566554
No 15
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=81.98 E-value=1.7 Score=38.79 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=34.4
Q ss_pred ceeEEEEEEEEEEeeeeee--------eeecCCCCCCCCCcceE--EecCcceeEecC---cEEEeeecc
Q 014221 290 GSLLTRSFAIVRWKTLSTR--------KVSATSGSASVPDEVFH--RAKGVQLCNTQA---YQCSPAFFA 346 (428)
Q Consensus 290 G~l~~~~~l~V~~~~~v~~--------~v~a~~~~~g~p~dl~~--rvkg~~lf~~e~---~~~~Pi~F~ 346 (428)
|.. ..+.++|+||.++.+ ++.++ ...+.++||++ +++.|..|++++ ++..||+|.
T Consensus 31 G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~-~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~ 98 (170)
T 1c3g_A 31 GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYN-PQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFK 98 (170)
T ss_dssp TEE-EEEEEEEECCTTCCTTCEEEESSCSSBC-SSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHH
T ss_pred CcE-EeEEEEEEeCCCccCCCEEEEeccccCC-CCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHH
Confidence 344 778899999976632 22211 12345678764 558999999887 444456544
No 16
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=64.65 E-value=2.8 Score=37.88 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=21.0
Q ss_pred ceeeeeeeee---cCCcEEEEEeecCCCceeCCccccCcee
Q 014221 183 DLRSQFPVLF---VPHQETRVKVPRSETIKKCPDCVGRGNA 220 (428)
Q Consensus 183 Dl~~~lp~~F---~~G~~~~i~vp~ss~V~~C~~C~G~G~~ 220 (428)
|+.+.+.++| ++|++++++++ ..|..|+|.|..
T Consensus 4 d~~~~l~islee~~~G~~k~i~i~-----~~c~~c~G~g~~ 39 (181)
T 3agx_A 4 PVTHDLRVSLEEIYSGCTKKMKIS-----HKRLNPDGKSIR 39 (181)
T ss_dssp --CEEEEECHHHHHHCEEEEEEEE-----EEEECTTSSCEE
T ss_pred CEEEEEEEEHHHhcCCcEEEEEEe-----cccCCCCCceEE
Confidence 4444455555 57999988887 457777777754
No 17
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=51.07 E-value=2.8 Score=45.50 Aligned_cols=28 Identities=18% Similarity=0.534 Sum_probs=21.4
Q ss_pred cccccCCccccccEEEEecCc----cccCCCCCCc
Q 014221 237 KQMSQCFNCYGRGLIAHKDGS----DTICTKCNGK 267 (428)
Q Consensus 237 ~~~~~C~~C~GsG~i~~~~G~----~~~C~~C~G~ 267 (428)
.....|..|+|+|.. .|. ..+|+.|+|.
T Consensus 189 ~~~~~C~tCHGsGA~---~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 189 VSIDTCNSCHSNLAF---HGGRYNQVETCVTCHNS 220 (669)
T ss_dssp CCSHHHHHHHSSCCT---TTTTSCSSSCSTTTSST
T ss_pred ccCCcCCCCCCCCCc---CCccCcCCccCCCCCCC
Confidence 356789999999863 343 4689999998
No 18
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.59 E-value=21 Score=28.51 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=13.3
Q ss_pred cCCCCCCccEEeCcCCCCCCcccCCCCCC
Q 014221 260 ICTKCNGKGTIPCATCGSRGLIKCRKCGG 288 (428)
Q Consensus 260 ~C~~C~G~G~~~C~tC~G~G~~~C~~C~G 288 (428)
.|+.|+-.=.+ |..|... ..-|..|+|
T Consensus 33 fCPeCgq~Le~-lkACGA~-~yFC~~C~~ 59 (81)
T 2jrp_A 33 LCPDCRQPLQV-LKACGAV-DYFCQNGHG 59 (81)
T ss_dssp ECSSSCSCCCE-EEETTEE-EECCTTTTC
T ss_pred cCcchhhHHHH-HHhcCCc-CeeeccCCC
Confidence 56666544332 4444433 445666654
No 19
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=31.52 E-value=20 Score=37.94 Aligned_cols=26 Identities=31% Similarity=0.912 Sum_probs=18.6
Q ss_pred cccCCCCCCccEEeCcCCCCCCcccCCCCC
Q 014221 258 DTICTKCNGKGTIPCATCGSRGLIKCRKCG 287 (428)
Q Consensus 258 ~~~C~~C~G~G~~~C~tC~G~G~~~C~~C~ 287 (428)
..+|..|+- .|.+|.|.+...|..|.
T Consensus 524 ~~~C~~Ch~----~C~tC~G~~~~~C~sC~ 549 (551)
T 3i2t_A 524 NRTCKICHP----ECRTCNGAGADHCQECV 549 (551)
T ss_dssp SSCCCCCCS----SCSSBCC---CCBSSCC
T ss_pred CCcccCCCC----cccCCCCcCcCcccccC
Confidence 457888876 48899999999999986
No 20
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.20 E-value=30 Score=24.83 Aligned_cols=6 Identities=67% Similarity=1.674 Sum_probs=2.4
Q ss_pred eeCCcc
Q 014221 209 KKCPDC 214 (428)
Q Consensus 209 ~~C~~C 214 (428)
+.|+.|
T Consensus 20 k~CP~C 25 (50)
T 3j20_Y 20 KFCPRC 25 (50)
T ss_dssp EECSSS
T ss_pred ccCCCC
Confidence 334443
No 21
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=28.65 E-value=4.9 Score=41.82 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=7.5
Q ss_pred cccCCccccc
Q 014221 239 MSQCFNCYGR 248 (428)
Q Consensus 239 ~~~C~~C~Gs 248 (428)
...|..||..
T Consensus 33 ~~~C~~CH~~ 42 (571)
T 1y0p_A 33 NTQCVSCHGT 42 (571)
T ss_dssp HHHHHHHHCC
T ss_pred cchhhhhCcC
Confidence 4669999875
No 22
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=28.07 E-value=89 Score=26.72 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=33.0
Q ss_pred CCCceeeecceEEE-EEeceeEEEeecCceeEEEEEecCc
Q 014221 366 PPTARIICERHTIS-VVPVTRVTMTQRGQSFSFYIIGNSR 404 (428)
Q Consensus 366 ~~~~RIl~QR~tI~-~IPVTeV~y~~~gk~~~~yVyG~e~ 404 (428)
.+...|+.-++-+. ..||=||.|.-++..+.||.|.|+.
T Consensus 88 ~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 88 GLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp TCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred CCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 35678888888777 7899999999878889999999965
No 23
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=25.06 E-value=34 Score=28.49 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=8.5
Q ss_pred eeCCccccCcee
Q 014221 209 KKCPDCVGRGNA 220 (428)
Q Consensus 209 ~~C~~C~G~G~~ 220 (428)
..|..|...|-.
T Consensus 5 ~~C~~C~~~GH~ 16 (124)
T 2lli_A 5 PKCNNCSQRGHL 16 (124)
T ss_dssp SCCSSCSSSSCC
T ss_pred CcccCCCCCCcC
Confidence 568888777754
No 24
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=24.34 E-value=6.1 Score=41.14 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=6.7
Q ss_pred cccCCccccc
Q 014221 239 MSQCFNCYGR 248 (428)
Q Consensus 239 ~~~C~~C~Gs 248 (428)
...|-.||+.
T Consensus 33 ~~~C~~CH~~ 42 (566)
T 1qo8_A 33 NAQCKSCHGE 42 (566)
T ss_dssp HHHHHHHHCC
T ss_pred CCHHhhhCcC
Confidence 3468888864
No 25
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=21.87 E-value=28 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=11.2
Q ss_pred cCCccccccEEEEec---CccccCCCCCCccEE
Q 014221 241 QCFNCYGRGLIAHKD---GSDTICTKCNGKGTI 270 (428)
Q Consensus 241 ~C~~C~GsG~i~~~~---G~~~~C~~C~G~G~~ 270 (428)
+|..|...|.+++.- .....|..|+..|-+
T Consensus 26 rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~ 58 (83)
T 3nyb_B 26 RAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHF 58 (83)
T ss_dssp CCCCBC-------------CCCBCSSSSCBSSC
T ss_pred cccccccCCcccccccCCCCCCeecccCCCCcC
Confidence 566777776653211 012456666665543
No 26
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens}
Probab=21.66 E-value=19 Score=28.04 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=11.1
Q ss_pred eecCCCCccccccC
Q 014221 405 EVYLKDYPSRFCWG 418 (428)
Q Consensus 405 ~V~a~dYP~~cC~g 418 (428)
+|-+-.||++|||-
T Consensus 70 evtaigypakccce 83 (91)
T 2jve_A 70 EVTAIGYPAKCCCE 83 (91)
T ss_dssp HHHTTTCCEEEECS
T ss_pred HHHHcCCchhhhHH
Confidence 46677899999883
Done!