BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014222
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 18/222 (8%)
Query: 136 AFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195
++DP+ W + + S G AVL+G LY GG D G + V Y+ ++N+
Sbjct: 81 SYDPVKDQWTSVANMRDRRST---LGAAVLNGL-LYAVGGFDGSTG-LSSVEAYNIKSNE 135
Query: 196 WHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAM 255
W M RR G V+ LY GG + + L + E Y+ N W++I++MST
Sbjct: 136 WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR 195
Query: 256 V-PFIGVVYEGKWFLKGLGSHRQVL----SEAYQPETDSWFPVYDGMVAGWRNPSASLNR 310
+GV+ L +G H L E Y P T++W V D + ++N
Sbjct: 196 SGAGVGVLNN---LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNG 252
Query: 311 HLYALDCKDG----CKIRVYDEVTDSWSKHIDSKMHLGNSRA 348
LY + DG + Y+ TD W+ + S M G S A
Sbjct: 253 LLYVVGGDDGSCNLASVEYYNPTTDKWTV-VSSCMSTGRSYA 293
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 25/242 (10%)
Query: 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR 192
S +D + W + +P A G ++G + G L+ +R V Y
Sbjct: 31 SVECYDFKEERWHQVAELPSRRCRA---GMVYMAGLVFAVGGFNGSLR--VRTVDSYDPV 85
Query: 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252
++W +M RR G+ V+N LY GG +G L S E Y+ N W ++ M+
Sbjct: 86 KDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST--GLSSVEAYNIKSNEWFHVAPMN 143
Query: 253 TAMVPFIGVVYEGKWFLKGLGSH----RQVLS--EAYQPETDSWFPVYDGMVAGWRNPSA 306
T V L +G + RQ LS E Y T+ W + +
Sbjct: 144 TRRSSVG--VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG 201
Query: 307 SLNRHLYALDCKDGCKIR----VYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLC 362
LN LYA+ DG +R VYD T++W + D M N A + +NG L
Sbjct: 202 VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN------AGVCAVNGLLY 255
Query: 363 II 364
++
Sbjct: 256 VV 257
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 159 GFGCAVLSGCHLYLFGGKD-PLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNC 217
G G VL+ LY GG D PL + V Y TN W + DM R G C +N
Sbjct: 197 GAGVGVLNNL-LYAVGGHDGPL--VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253
Query: 218 LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262
LYV GG++G + L S E Y+P ++W+ +S + + GV
Sbjct: 254 LYVVGGDDGSCN--LASVEYYNPTTDKWTVVSSCMSTGRSYAGVT 296
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 111 RKSLGIAEEWIYVIKRDREGKI---SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSG 167
R +G+ + IY + G I S ++P W + P+ + +G G AVL+
Sbjct: 107 RIGVGVIDGHIYAVG-GSHGCIHHSSVERYEPERDEWHLVAPM---LTRRIGVGVAVLNR 162
Query: 168 CHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGG 227
LY GG D +Y R N+W M R G CV++NC+Y AGG +G
Sbjct: 163 L-LYAVGGFDGTNRLNSAECYYPER-NEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDG- 219
Query: 228 VHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLS-EAYQP 285
L S E YD W+F++ M V++GK + L G H + S E Y P
Sbjct: 220 -QDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDP 278
Query: 286 ETDSWFPV 293
++D+W V
Sbjct: 279 DSDTWSEV 286
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 161 GCAVLSGCHLYLFGGKD--PLKGSMRRVI-FYSARTNKWHRAPDMLRRRHFFGSCVINNC 217
GC V G LY GG++ P + + Y+ TN+W M R+ G VI+
Sbjct: 59 GCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGH 116
Query: 218 LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF-IGVVYEGKWFLKGL-GSH 275
+Y GG +G +H S S E Y+P ++ W ++ M T + + V+ + + G G++
Sbjct: 117 IYAVGGSHGCIHHS--SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 174
Query: 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYDEVTD 331
R +E Y PE + W + L+ +YA DG + YD T+
Sbjct: 175 RLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 234
Query: 332 SWS 334
+W+
Sbjct: 235 TWT 237
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVH 229
+Y GG + S+ + Y+ W R D+ R CV+ LY GG N
Sbjct: 20 IYTAGGY--FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 77
Query: 230 RSLRSA--EVYDPNKNRWSFISDMSTAMVP--FIGV-VYEGKWFLKGLGSH---RQVLSE 281
+ S+ + Y+P N+WS + MS VP IGV V +G + G GSH E
Sbjct: 78 GNTDSSALDCYNPMTNQWSPCASMS---VPRNRIGVGVIDGHIYAVG-GSHGCIHHSSVE 133
Query: 282 AYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG 320
Y+PE D W V + A LNR LYA+ DG
Sbjct: 134 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 172
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR 192
S + P W+ + P+ S G G VL C +Y GG D + + V Y
Sbjct: 178 SAECYYPERNEWRMITPMNTIRS---GAGVCVLHNC-IYAAGGYDG-QDQLNSVERYDVE 232
Query: 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252
T W M R G V +YV GG +G H L S E YDP+ + WS ++ M+
Sbjct: 233 TETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG--HTFLDSVECYDPDSDTWSEVTRMT 290
Query: 253 TA 254
+
Sbjct: 291 SG 292
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 111 RKSLGIAEEWIYVIKRDREGKI---SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSG 167
R +G+ + IY + G I S ++P W + P+ + +G G AVL+
Sbjct: 114 RIGVGVIDGHIYAVG-GSHGCIHHNSVERYEPERDEWHLVAPM---LTRRIGVGVAVLNR 169
Query: 168 CHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGG 227
LY GG D +Y R N+W M R G CV++NC+Y AGG +G
Sbjct: 170 L-LYAVGGFDGTNRLNSAECYYPER-NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG- 226
Query: 228 VHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLS-EAYQP 285
L S E YD W+F++ M V++G+ + L G H + S E Y P
Sbjct: 227 -QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 285
Query: 286 ETDSWFPV 293
+TD+W V
Sbjct: 286 DTDTWSEV 293
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVH 229
+Y GG + S+ + Y+ W R D+ R CV+ LY GG N
Sbjct: 27 IYTAGGY--FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 230 RSLRSA--EVYDPNKNRWSFISDMSTAMVP--FIGV-VYEGKWFLKGLGSHRQVLS---E 281
+ S+ + Y+P N+WS + MS VP IGV V +G + G GSH + E
Sbjct: 85 GNTDSSALDCYNPMTNQWSPCAPMS---VPRNRIGVGVIDGHIYAVG-GSHGCIHHNSVE 140
Query: 282 AYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCK 322
Y+PE D W V + A LNR LYA+ DG
Sbjct: 141 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 161 GCAVLSGCHLYLFGGKD--PLKGSMRRVI-FYSARTNKWHRAPDMLRRRHFFGSCVINNC 217
GC V G LY GG++ P + + Y+ TN+W M R+ G VI+
Sbjct: 66 GCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH 123
Query: 218 LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF-IGVVYEGKWFLKGL-GSH 275
+Y GG +G +H + S E Y+P ++ W ++ M T + + V+ + + G G++
Sbjct: 124 IYAVGGSHGCIHHN--SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 181
Query: 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYDEVTD 331
R +E Y PE + W + L+ +YA DG + YD T+
Sbjct: 182 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241
Query: 332 SWS 334
+W+
Sbjct: 242 TWT 244
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 159 GFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCL 218
G G VL C +Y GG D + + V Y T W M RR G V +
Sbjct: 208 GAGVCVLHNC-IYAAGGYDG-QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRI 265
Query: 219 YVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTA 254
YV GG +G H L S E YDP+ + WS ++ M++
Sbjct: 266 YVLGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSG 299
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 111 RKSLGIAEEWIYVIKRDREGKI---SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSG 167
R +G+ + IY + G I S ++P W + P+ + +G G AVL+
Sbjct: 115 RIGVGVIDGHIYAVG-GSHGCIHHNSVERYEPERDEWHLVAPM---LTRRIGVGVAVLNR 170
Query: 168 CHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGG 227
LY GG D +Y R N+W M R G CV++NC+Y AGG +G
Sbjct: 171 L-LYAVGGFDGTNRLNSAECYYPER-NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG- 227
Query: 228 VHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLS-EAYQP 285
L S E YD W+F++ M V++G+ + L G H + S E Y P
Sbjct: 228 -QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 286
Query: 286 ETDSWFPV 293
+TD+W V
Sbjct: 287 DTDTWSEV 294
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVH 229
+Y GG + S+ + Y+ W R D+ R CV+ LY GG N
Sbjct: 28 IYTAGGY--FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 85
Query: 230 RSLRSA--EVYDPNKNRWSFISDMSTAMVP--FIGV-VYEGKWFLKGLGSHRQVLS---E 281
+ S+ + Y+P N+WS + MS VP IGV V +G + G GSH + E
Sbjct: 86 GNTDSSALDCYNPMTNQWSPCAPMS---VPRNRIGVGVIDGHIYAVG-GSHGCIHHNSVE 141
Query: 282 AYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCK 322
Y+PE D W V + A LNR LYA+ DG
Sbjct: 142 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 182
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 161 GCAVLSGCHLYLFGGKD--PLKGSMRRVI-FYSARTNKWHRAPDMLRRRHFFGSCVINNC 217
GC V G LY GG++ P + + Y+ TN+W M R+ G VI+
Sbjct: 67 GCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH 124
Query: 218 LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF-IGVVYEGKWFLKGL-GSH 275
+Y GG +G +H + S E Y+P ++ W ++ M T + + V+ + + G G++
Sbjct: 125 IYAVGGSHGCIHHN--SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 182
Query: 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYDEVTD 331
R +E Y PE + W + L+ +YA DG + YD T+
Sbjct: 183 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 242
Query: 332 SWS 334
+W+
Sbjct: 243 TWT 245
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 159 GFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCL 218
G G VL C +Y GG D + + V Y T W M RR G V +
Sbjct: 209 GAGVCVLHNC-IYAAGGYDG-QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRI 266
Query: 219 YVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTA 254
YV GG +G H L S E YDP+ + WS ++ M++
Sbjct: 267 YVLGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSG 300
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 111 RKSLGIAEEWIYVIKRDREGKI---SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSG 167
R +G+ + IY + G I S ++P W + P+ + +G G AVL+
Sbjct: 108 RIGVGVIDGHIYAVG-GSHGCIHHSSVERYEPERDEWHLVAPM---LTRRIGVGVAVLNR 163
Query: 168 CHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGG 227
LY GG D +Y R N+W M R G CV++NC+Y AGG +G
Sbjct: 164 L-LYAVGGFDGTNRLNSAECYYPER-NEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDG- 220
Query: 228 VHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLS-EAYQP 285
L S E YD W+F++ M V++GK + L G H + S E Y P
Sbjct: 221 -QDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDP 279
Query: 286 ETDSWFPV 293
++D+W V
Sbjct: 280 DSDTWSEV 287
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 161 GCAVLSGCHLYLFGGKD--PLKGSMRRVI-FYSARTNKWHRAPDMLRRRHFFGSCVINNC 217
GC V G LY GG++ P + + Y+ TN+W M R+ G VI+
Sbjct: 60 GCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGH 117
Query: 218 LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF-IGVVYEGKWFLKGL-GSH 275
+Y GG +G +H S S E Y+P ++ W ++ M T + + V+ + + G G++
Sbjct: 118 IYAVGGSHGCIHHS--SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 175
Query: 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYDEVTD 331
R +E Y PE + W + L+ +YA DG + YD T+
Sbjct: 176 RLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 235
Query: 332 SWS 334
+W+
Sbjct: 236 TWT 238
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVH 229
+Y GG + S+ + Y+ W R D+ R CV+ LY GG N
Sbjct: 21 IYTAGGY--FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 78
Query: 230 RSLRSA--EVYDPNKNRWSFISDMSTAMVP--FIGV-VYEGKWFLKGLGSH---RQVLSE 281
+ S+ + Y+P N+WS + MS VP IGV V +G + G GSH E
Sbjct: 79 GNTDSSALDCYNPMTNQWSPCASMS---VPRNRIGVGVIDGHIYAVG-GSHGCIHHSSVE 134
Query: 282 AYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG 320
Y+PE D W V + A LNR LYA+ DG
Sbjct: 135 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 173
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR 192
S + P W+ + P+ S G G VL C +Y GG D + + V Y
Sbjct: 179 SAECYYPERNEWRMITPMNTIRS---GAGVCVLHNC-IYAAGGYDG-QDQLNSVERYDVE 233
Query: 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252
T W M R G V +YV GG +G H L S E YDP+ + WS ++ M+
Sbjct: 234 TETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG--HTFLDSVECYDPDSDTWSEVTRMT 291
Query: 253 TA 254
+
Sbjct: 292 SG 293
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 111 RKSLGIAEEWIYVIKRDREGKI---SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSG 167
R +G+ + IY + G I S ++P W + P + +G G AVL+
Sbjct: 114 RIGVGVIDGHIYAVG-GSHGCIHHNSVERYEPERDEWHLVAP---XLTRRIGVGVAVLNR 169
Query: 168 CHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGG 227
LY GG D +Y R N+W R G CV++NC+Y AGG +G
Sbjct: 170 L-LYAVGGFDGTNRLNSAECYYPER-NEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDG- 226
Query: 228 VHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLS-EAYQP 285
L S E YD W+F++ V++G+ + L G H + S E Y P
Sbjct: 227 -QDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 285
Query: 286 ETDSWFPV 293
+TD+W V
Sbjct: 286 DTDTWSEV 293
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVH 229
+Y GG + S+ + Y+ W R D+ R CV+ LY GG N
Sbjct: 27 IYTAGGY--FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 230 RSLRSA--EVYDPNKNRWSFISDMSTAMVP--FIGV-VYEGKWFLKGLGSHRQVLS---E 281
+ S+ + Y+P N+WS + S VP IGV V +G + G GSH + E
Sbjct: 85 GNTDSSALDCYNPXTNQWSPCAPXS---VPRNRIGVGVIDGHIYAVG-GSHGCIHHNSVE 140
Query: 282 AYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCK 322
Y+PE D W V + A LNR LYA+ DG
Sbjct: 141 RYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTN 181
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 15/208 (7%)
Query: 136 AFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKD--PLKGSMRRVI-FYSAR 192
A++P W L + S G C V G LY GG++ P + + Y+
Sbjct: 43 AYNPSNGTWLRLADLQVPRSGLAG--CVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPX 98
Query: 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252
TN+W R+ G VI+ +Y GG +G +H + S E Y+P ++ W ++
Sbjct: 99 TNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHN--SVERYEPERDEWHLVAPXL 156
Query: 253 TAMVPF-IGVVYEGKWFLKGL-GSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNR 310
T + + V+ + + G G++R +E Y PE + W + L+
Sbjct: 157 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHN 216
Query: 311 HLYALDCKDG----CKIRVYDEVTDSWS 334
+YA DG + YD T++W+
Sbjct: 217 CIYAAGGYDGQDQLNSVERYDVETETWT 244
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 159 GFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCL 218
G G VL C +Y GG D + + V Y T W RR G V +
Sbjct: 208 GAGVCVLHNC-IYAAGGYDG-QDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRI 265
Query: 219 YVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTA 254
YV GG +G H L S E YDP+ + WS ++ ++
Sbjct: 266 YVLGGYDG--HTFLDSVECYDPDTDTWSEVTRXTSG 299
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Query: 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR 192
S +DP W L + G G V SG +Y GG D L + V Y
Sbjct: 129 SMERYDPNIDQWSMLGDMQTARE---GAGLVVASGV-IYCLGGYDGLN-ILNSVEKYDPH 183
Query: 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252
T W M +R G ++N+ +YV GG +G H L S E Y+ + W+ ++ M+
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH--LSSVEAYNIRTDSWTTVTSMT 241
Query: 253 TAMVPFIGVVYEGKWFLKGLGSHRQVLS--EAYQPETDSW 290
T V G+ + +LS E Y P DSW
Sbjct: 242 TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR 192
S +DP W + P+ + S G G A+L+ H+Y+ GG D + V Y+ R
Sbjct: 176 SVEKYDPHTGHWTNVTPMATKRS---GAGVALLND-HIYVVGGFDG-TAHLSSVEAYNIR 230
Query: 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252
T+ W M R + G+ V+ LY G +G + L S E YDP + W ++ M
Sbjct: 231 TDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG--NSLLSSIECYDPIIDSWEVVTSMG 288
Query: 253 T 253
T
Sbjct: 289 T 289
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 78/220 (35%), Gaps = 54/220 (24%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENG--- 226
L + GG + + V Y +T +W P + R+R + S +++ +YV GG +G
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSR 76
Query: 227 -----------------------GVHRSLRSA----------------------EVYDPN 241
V R L A E YDPN
Sbjct: 77 LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPN 136
Query: 242 KNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLS--EAYQPETDSWFPVYDGMVA 299
++WS + DM TA VV G + G +L+ E Y P T W V
Sbjct: 137 IDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK 196
Query: 300 GWRNPSASLNRHLYALDCKDGC----KIRVYDEVTDSWSK 335
A LN H+Y + DG + Y+ TDSW+
Sbjct: 197 RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 74/196 (37%), Gaps = 18/196 (9%)
Query: 148 PPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRH 207
PP P++ A CA +Y GG + ++ Y RT WH P ML +R
Sbjct: 88 PPTPRDSLAA----CAAEG--KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC 141
Query: 208 FFGSCVINNCLYVAGGE--NGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEG 265
G N +YV GG N R L S EVYDP W+ + M A V +
Sbjct: 142 SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKD 201
Query: 266 KWFL----KGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGC 321
K F GLG V E Y + + W V G A++ +Y L G
Sbjct: 202 KIFAVGGQNGLGGLDNV--EYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGV 259
Query: 322 ----KIRVYDEVTDSW 333
I Y+ TD W
Sbjct: 260 GRLGHILEYNTETDKW 275
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVH 229
+Y+ GG ++R+ Y+ + W+ R +C +Y +GG G +
Sbjct: 58 VYILGGSQLFP--IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVG-N 114
Query: 230 RSLRSAEVYDPNKNRWSFISDMST-----AMVPFIGVVYEGKWFLKGLGSHRQVLS-EAY 283
+L E YD W M T MV G++Y L S R + S E Y
Sbjct: 115 SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVY 174
Query: 284 QPETDSW 290
P T++W
Sbjct: 175 DPATETW 181
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 114 LGIAEEWIYVIK-RDREGKISWHA---FDPIYQLWQPLPPIPKEYSEALGFGCAVLS-GC 168
LG ++ IYV+ +D + + S + +DP+ W + +P + +G V+S
Sbjct: 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-----YGHNVISHNG 159
Query: 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGG--ENG 226
+Y GGK K RV Y+ + W M R FG + + +AGG E+G
Sbjct: 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG 219
Query: 227 GVHRSLRSAEVYDPNKNRWSFISDM-----STAMVPFIGVVY 263
S E +D N+W +++ S ++V G +Y
Sbjct: 220 ----LSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLY 257
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 12/176 (6%)
Query: 121 IYVIKRDREGKISWHAF--DPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKD- 177
+YV + +++ + + F D + W LPP+P S FG + +Y+ GKD
Sbjct: 65 LYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP---SARCLFGLGEVDD-KIYVVAGKDL 120
Query: 178 PLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEV 237
+ S+ V+ Y KW ++ + + N +Y GG+ + +
Sbjct: 121 QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD-KKCTNRVFI 179
Query: 238 YDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLS---EAYQPETDSW 290
Y+P K W ++ M T F +++GK + G G LS EA+ +T+ W
Sbjct: 180 YNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAG-GVTEDGLSASVEAFDLKTNKW 234
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 85 RVEHCKLRLVCKRWHRLLSGNFYYSLRKSLGIAEEWIYVIKRDREGKISWH--AFDPIYQ 142
+V + LV K ++G +Y+ + ++E +S + FD +
Sbjct: 33 QVPKNHVSLVTKENQVFVAGGLFYN---------------EDNKEDPMSAYFLQFDHLDS 77
Query: 143 LWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGS--MRRVIFYSARTNKWHRAP 200
W +PP+P G G A+ S +Y+ GG++ G + V+ Y + KW +
Sbjct: 78 EWLGMPPLPSPRC-LFGLGEALNS---IYVVGGREIKDGERCLDSVMCYDRLSFKWGESD 133
Query: 201 DMLRRRHFFGSCVIN--NCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF 258
+ +G V++ + +YV GG+ G + L VYDP K W ++ M TA F
Sbjct: 134 PL--PYVVYGHTVLSHMDLVYVIGGK-GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190
Query: 259 IGVVYEGKWFLKGLGSHRQVLS--EAYQPETDSWFP 292
V++G+ + + + S E Y + W P
Sbjct: 191 GATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 161 GCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINN--CL 218
G ++ + + GG D K S+ Y + ++ W PDM R + S +++
Sbjct: 230 GISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVF 284
Query: 219 YVAGGENGGVHRSLRSAEVYDPNKNRWS 246
+ G +GGV ++ EVY P+ W+
Sbjct: 285 TIGGSGSGGVFE--KNGEVYSPSSKTWT 310
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 294 YDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDS------WSKHIDSKMHLGNSR 347
++ + GWR P +++ LYAL + G + Y V DS W+ +LG
Sbjct: 414 FNRALQGWRQPGSTIKPFLYALALERG--MTPYSMVNDSPITIGKWTPKNSDGRYLG--- 468
Query: 348 ALEAAALVPLNGKLCIIRNNMSISLVDV 375
++PL L + RN +S+ L+
Sbjct: 469 ------MIPLRRALYLSRNTVSVRLLQT 490
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 138 DPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGS--MRRVIFYSARTNK 195
D YQL + PI ++ FG ++G ++ GG +P + + ++ I Y K
Sbjct: 374 DEDYQLLECECPINRK------FGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMK 427
Query: 196 WHRAPD----MLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDM 251
+ R H F + NN L + GG H+ L ++D WS I +
Sbjct: 428 NIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP-HQGLSDNWIFDMKTREWSMIKSL 486
Query: 252 S 252
S
Sbjct: 487 S 487
>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|B Chain B, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|C Chain C, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|D Chain D, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
Length = 489
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 296 GMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALV 355
G +A W P + A+D K +V VT S GN+ + +
Sbjct: 370 GDLANWMIPGKMVKGMGGAMDLVSSAKTKVV--VTMEHSAK-------GNAHKIMEKCTL 420
Query: 356 PLNGKLCIIRNNMSISLVDVSKSNGERGASAEHLWETIS 394
PL GK C+ R ++ DV K ++G + LWE ++
Sbjct: 421 PLTGKQCVNRIITEKAVFDVDK---KKGLTLIELWEGLT 456
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 153 EYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRR--VIFYS--------ARTNKWHRAPD 201
+Y E G AVL+G + ++ D +K +RR +F+S +T++W++A +
Sbjct: 439 KYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVE 497
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 153 EYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRR--VIFYS--------ARTNKWHRAPD 201
+Y E G AVL+G + ++ D +K +RR +F+S +T++W++A +
Sbjct: 443 KYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDDKKRKKKTSEWNKAVE 501
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 259 IGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCK 318
I + +GK +L GL S+ ++S + FP Y V W +P L ++L D K
Sbjct: 143 ILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEV-LQQNLQGYDAK 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,950,764
Number of Sequences: 62578
Number of extensions: 608618
Number of successful extensions: 1379
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 56
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)