Query 014222
Match_columns 428
No_of_seqs 330 out of 3163
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:02:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.2E-48 2.6E-53 389.5 24.2 343 22-399 200-559 (571)
2 PHA02713 hypothetical protein; 100.0 3.7E-46 7.9E-51 373.4 27.5 332 22-401 190-548 (557)
3 KOG4441 Proteins containing BT 100.0 8.7E-42 1.9E-46 340.3 24.6 294 21-338 251-555 (571)
4 PHA03098 kelch-like protein; P 100.0 1.6E-39 3.5E-44 328.0 22.3 334 21-399 170-524 (534)
5 PHA02713 hypothetical protein; 100.0 3.7E-38 7.9E-43 315.8 23.3 243 88-338 274-542 (557)
6 PLN02153 epithiospecifier prot 100.0 4.7E-37 1E-41 292.4 28.1 281 97-379 8-339 (341)
7 PLN02193 nitrile-specifier pro 100.0 1E-35 2.3E-40 293.4 29.4 281 96-380 151-469 (470)
8 PLN02153 epithiospecifier prot 100.0 3.7E-35 7.9E-40 279.4 29.6 249 139-400 4-303 (341)
9 PLN02193 nitrile-specifier pro 100.0 1.9E-34 4.2E-39 284.4 33.5 267 118-397 120-421 (470)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 9E-35 1.9E-39 277.7 28.8 241 117-368 16-331 (346)
11 TIGR03548 mutarot_permut cycli 100.0 1.6E-34 3.6E-39 273.0 29.7 241 117-369 12-314 (323)
12 PHA02790 Kelch-like protein; P 100.0 5.8E-35 1.3E-39 288.8 27.3 208 162-393 267-477 (480)
13 PRK14131 N-acetylneuraminic ac 100.0 2.5E-34 5.4E-39 276.7 28.6 253 117-380 37-369 (376)
14 PHA02790 Kelch-like protein; P 100.0 3.9E-34 8.5E-39 282.9 26.5 202 117-336 270-477 (480)
15 PHA03098 kelch-like protein; P 100.0 7.5E-34 1.6E-38 286.9 26.9 244 91-343 269-525 (534)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 2.3E-33 5.1E-38 268.0 27.9 239 147-401 1-313 (346)
17 TIGR03548 mutarot_permut cycli 100.0 1.6E-32 3.6E-37 259.4 26.5 231 157-398 4-291 (323)
18 PRK14131 N-acetylneuraminic ac 100.0 9.4E-32 2E-36 258.8 28.0 255 143-413 18-352 (376)
19 KOG4693 Uncharacterized conser 100.0 7.3E-32 1.6E-36 230.0 20.7 248 118-369 23-313 (392)
20 KOG4693 Uncharacterized conser 100.0 9.8E-29 2.1E-33 211.0 19.2 231 156-398 13-288 (392)
21 KOG0379 Kelch repeat-containin 99.9 2.2E-23 4.8E-28 205.3 25.7 232 154-397 58-312 (482)
22 KOG0379 Kelch repeat-containin 99.9 3.1E-23 6.7E-28 204.3 24.7 232 107-340 57-312 (482)
23 KOG4152 Host cell transcriptio 99.9 1.9E-23 4.2E-28 193.2 15.3 251 118-369 42-343 (830)
24 KOG1230 Protein containing rep 99.9 1.1E-21 2.4E-26 177.4 18.4 218 118-336 78-347 (521)
25 KOG1230 Protein containing rep 99.9 2E-21 4.3E-26 175.9 18.1 227 156-393 66-347 (521)
26 KOG4152 Host cell transcriptio 99.8 3.7E-19 8E-24 165.0 16.3 238 142-393 17-309 (830)
27 COG3055 Uncharacterized protei 99.8 1.4E-16 3E-21 142.8 20.1 238 118-368 46-359 (381)
28 COG3055 Uncharacterized protei 99.6 2.7E-14 5.9E-19 128.2 18.9 238 146-401 29-341 (381)
29 KOG2437 Muskelin [Signal trans 99.3 3.3E-12 7.1E-17 119.1 5.6 251 139-397 236-545 (723)
30 PF13964 Kelch_6: Kelch motif 99.2 5.3E-11 1.1E-15 79.0 6.4 50 205-255 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.2 5.6E-11 1.2E-15 78.9 6.1 49 157-206 2-50 (50)
32 TIGR01640 F_box_assoc_1 F-box 99.1 5.7E-08 1.2E-12 87.3 22.2 194 184-380 14-229 (230)
33 KOG2437 Muskelin [Signal trans 99.0 3.6E-10 7.9E-15 105.7 4.8 188 191-380 236-472 (723)
34 PF01344 Kelch_1: Kelch motif; 99.0 7E-10 1.5E-14 72.6 4.2 47 205-252 1-47 (47)
35 TIGR01640 F_box_assoc_1 F-box 98.9 9.9E-07 2.1E-11 79.2 24.1 207 116-331 3-230 (230)
36 PF01344 Kelch_1: Kelch motif; 98.9 1.7E-09 3.7E-14 70.7 4.3 46 157-203 2-47 (47)
37 PF07646 Kelch_2: Kelch motif; 98.9 8E-09 1.7E-13 68.0 6.4 48 205-252 1-49 (49)
38 PF13415 Kelch_3: Galactose ox 98.8 1.1E-08 2.4E-13 67.3 5.4 46 169-214 3-49 (49)
39 PF13415 Kelch_3: Galactose ox 98.8 2.3E-08 5E-13 65.8 6.0 49 215-263 1-49 (49)
40 PF13418 Kelch_4: Galactose ox 98.7 1.3E-08 2.8E-13 67.1 4.2 48 157-204 2-49 (49)
41 smart00612 Kelch Kelch domain. 98.7 3.1E-08 6.8E-13 64.6 4.9 47 169-216 1-47 (47)
42 PF07646 Kelch_2: Kelch motif; 98.7 5.8E-08 1.3E-12 63.9 5.9 46 157-203 2-49 (49)
43 PF13418 Kelch_4: Galactose ox 98.7 3.2E-08 6.8E-13 65.2 4.3 47 205-252 1-48 (49)
44 smart00612 Kelch Kelch domain. 98.6 5E-08 1.1E-12 63.6 4.9 47 217-265 1-47 (47)
45 PF07250 Glyoxal_oxid_N: Glyox 98.5 3.2E-06 6.9E-11 75.1 14.3 150 184-342 46-211 (243)
46 PF07250 Glyoxal_oxid_N: Glyox 98.5 6.7E-06 1.5E-10 73.0 15.4 177 234-424 47-242 (243)
47 PLN02772 guanylate kinase 98.4 2.5E-06 5.5E-11 80.4 10.9 83 204-287 23-109 (398)
48 PLN02772 guanylate kinase 98.1 1.6E-05 3.5E-10 75.1 10.5 81 157-242 25-109 (398)
49 PF13854 Kelch_5: Kelch motif 98.1 7.2E-06 1.6E-10 51.8 5.3 41 202-242 1-41 (42)
50 PRK11138 outer membrane biogen 98.1 0.0063 1.4E-07 59.3 27.3 221 117-380 68-313 (394)
51 PLN03215 ascorbic acid mannose 98.1 0.0012 2.5E-08 62.5 20.8 38 67-104 3-41 (373)
52 PRK11138 outer membrane biogen 98.0 0.0083 1.8E-07 58.5 26.4 215 118-380 120-354 (394)
53 PF07893 DUF1668: Protein of u 98.0 0.011 2.4E-07 56.2 26.2 124 162-295 71-216 (342)
54 KOG0281 Beta-TrCP (transducin 97.9 0.00054 1.2E-08 62.2 15.4 43 67-109 74-120 (499)
55 PF12937 F-box-like: F-box-lik 97.9 6E-06 1.3E-10 53.6 2.1 42 68-109 1-42 (47)
56 PF13854 Kelch_5: Kelch motif 97.9 3E-05 6.5E-10 48.9 4.7 38 156-194 4-42 (42)
57 PF13360 PQQ_2: PQQ-like domai 97.7 0.032 7E-07 49.9 25.1 205 133-380 4-231 (238)
58 TIGR03300 assembly_YfgL outer 97.7 0.055 1.2E-06 52.4 27.3 214 118-380 65-298 (377)
59 TIGR03300 assembly_YfgL outer 97.7 0.067 1.4E-06 51.8 26.7 215 118-380 105-339 (377)
60 PF03089 RAG2: Recombination a 97.6 0.0035 7.5E-08 55.8 15.0 103 171-273 42-173 (337)
61 smart00256 FBOX A Receptor for 97.5 4.9E-05 1.1E-09 47.6 1.3 38 71-108 1-38 (41)
62 PF07893 DUF1668: Protein of u 97.4 0.011 2.4E-07 56.2 16.2 116 214-338 75-216 (342)
63 PF00646 F-box: F-box domain; 97.3 9.2E-05 2E-09 48.2 1.3 42 68-109 3-44 (48)
64 PF13360 PQQ_2: PQQ-like domai 97.3 0.12 2.6E-06 46.1 22.3 174 185-380 4-192 (238)
65 PF12768 Rax2: Cortical protei 97.1 0.051 1.1E-06 49.8 16.6 105 231-338 14-130 (281)
66 PRK04792 tolB translocation pr 96.9 0.51 1.1E-05 46.9 26.6 227 132-380 198-426 (448)
67 TIGR03866 PQQ_ABC_repeats PQQ- 96.8 0.38 8.2E-06 44.2 23.7 184 121-333 3-191 (300)
68 TIGR03866 PQQ_ABC_repeats PQQ- 96.8 0.26 5.7E-06 45.3 19.8 142 169-332 2-148 (300)
69 PRK04792 tolB translocation pr 96.7 0.72 1.6E-05 45.8 23.8 186 129-331 239-427 (448)
70 TIGR02800 propeller_TolB tol-p 96.7 0.71 1.5E-05 45.2 26.1 228 129-380 167-398 (417)
71 PF08450 SGL: SMP-30/Gluconola 96.7 0.13 2.8E-06 46.5 16.2 195 118-337 11-221 (246)
72 PF12768 Rax2: Cortical protei 96.5 0.072 1.6E-06 48.9 13.4 110 182-295 14-130 (281)
73 KOG0274 Cdc4 and related F-box 96.4 0.43 9.3E-06 48.2 19.4 285 64-380 104-401 (537)
74 PRK11028 6-phosphogluconolacto 96.4 0.87 1.9E-05 43.1 24.1 194 120-336 3-214 (330)
75 PF02897 Peptidase_S9_N: Proly 96.4 0.71 1.5E-05 45.3 20.8 240 131-393 149-411 (414)
76 PRK05137 tolB translocation pr 96.3 1.2 2.7E-05 43.9 25.7 226 131-380 181-413 (435)
77 PRK00178 tolB translocation pr 96.3 1.2 2.7E-05 43.8 22.0 139 233-380 223-364 (430)
78 PF08450 SGL: SMP-30/Gluconola 96.3 0.25 5.4E-06 44.6 15.7 183 169-380 13-214 (246)
79 PRK05137 tolB translocation pr 96.2 1.5 3.2E-05 43.4 23.6 189 131-337 225-420 (435)
80 KOG0310 Conserved WD40 repeat- 96.1 0.12 2.6E-06 49.4 12.6 176 183-380 47-226 (487)
81 PRK00178 tolB translocation pr 96.1 1.6 3.6E-05 43.0 26.2 181 183-380 222-407 (430)
82 PRK04922 tolB translocation pr 96.1 1.7 3.7E-05 42.9 25.3 182 183-380 227-412 (433)
83 PF08268 FBA_3: F-box associat 96.0 0.14 3E-06 41.2 11.1 78 261-338 2-89 (129)
84 PF03178 CPSF_A: CPSF A subuni 96.0 0.36 7.8E-06 45.6 15.8 150 169-329 43-204 (321)
85 PF05096 Glu_cyclase_2: Glutam 95.9 0.38 8.2E-06 43.3 14.3 154 211-380 50-204 (264)
86 KOG2055 WD40 repeat protein [G 95.9 0.4 8.7E-06 45.8 15.0 185 166-380 223-418 (514)
87 PRK13684 Ycf48-like protein; P 95.9 1.7 3.7E-05 41.2 20.6 209 139-380 116-332 (334)
88 PF05096 Glu_cyclase_2: Glutam 95.7 0.23 5.1E-06 44.7 12.2 105 263-380 54-158 (264)
89 PRK04922 tolB translocation pr 95.7 2.5 5.3E-05 41.8 24.1 184 130-332 226-414 (433)
90 cd00200 WD40 WD40 domain, foun 95.7 1.5 3.2E-05 39.2 21.8 173 133-331 74-251 (289)
91 cd00200 WD40 WD40 domain, foun 95.7 1.5 3.2E-05 39.2 18.3 183 169-380 22-208 (289)
92 KOG0310 Conserved WD40 repeat- 95.5 1.5 3.2E-05 42.3 17.0 219 118-370 79-302 (487)
93 KOG2055 WD40 repeat protein [G 95.5 0.45 9.8E-06 45.4 13.5 183 217-422 226-415 (514)
94 TIGR02800 propeller_TolB tol-p 95.5 2.8 6E-05 41.0 23.7 183 131-331 213-399 (417)
95 PF03178 CPSF_A: CPSF A subuni 95.5 1.1 2.4E-05 42.3 16.8 137 233-380 62-205 (321)
96 PF10282 Lactonase: Lactonase, 95.4 2.7 5.8E-05 40.1 22.5 251 117-394 47-332 (345)
97 PF10282 Lactonase: Lactonase, 95.2 3.1 6.7E-05 39.7 22.9 231 132-378 15-274 (345)
98 PRK02889 tolB translocation pr 95.1 3.8 8.2E-05 40.4 20.0 184 183-380 175-361 (427)
99 PF08268 FBA_3: F-box associat 95.0 0.89 1.9E-05 36.4 12.6 80 212-294 2-88 (129)
100 PRK04043 tolB translocation pr 95.0 4 8.8E-05 40.1 20.0 179 184-380 213-401 (419)
101 PF03089 RAG2: Recombination a 94.9 2.6 5.6E-05 38.1 15.9 78 147-227 81-176 (337)
102 PLN02919 haloacid dehalogenase 94.9 7.6 0.00017 43.0 27.0 237 118-380 579-889 (1057)
103 PRK04043 tolB translocation pr 94.6 5.2 0.00011 39.3 22.6 188 131-336 212-407 (419)
104 PF14870 PSII_BNR: Photosynthe 94.5 4.1 8.8E-05 37.9 20.3 220 118-369 71-297 (302)
105 PRK02889 tolB translocation pr 94.5 5.4 0.00012 39.3 26.2 226 130-380 174-404 (427)
106 COG4946 Uncharacterized protei 94.4 5.3 0.00012 38.7 19.4 168 103-294 262-439 (668)
107 PRK03629 tolB translocation pr 94.3 6 0.00013 39.0 23.9 189 131-336 222-413 (429)
108 PTZ00421 coronin; Provisional 94.2 6.9 0.00015 39.3 20.3 151 169-336 139-297 (493)
109 KOG2120 SCF ubiquitin ligase, 93.9 0.024 5.3E-07 51.3 1.0 40 68-107 98-137 (419)
110 PRK10115 protease 2; Provision 93.7 11 0.00023 39.8 27.3 250 119-395 138-403 (686)
111 PRK03629 tolB translocation pr 93.7 7.8 0.00017 38.2 28.0 239 118-380 164-407 (429)
112 PLN02919 haloacid dehalogenase 93.6 15 0.00032 40.9 22.9 156 160-332 686-891 (1057)
113 PRK11028 6-phosphogluconolacto 93.4 7.1 0.00015 36.8 25.4 236 118-380 46-307 (330)
114 PF06433 Me-amine-dh_H: Methyl 93.4 1.9 4.2E-05 40.3 12.5 227 132-380 67-321 (342)
115 PF14870 PSII_BNR: Photosynthe 93.4 6.7 0.00015 36.5 21.0 240 118-397 27-272 (302)
116 PLN00181 protein SPA1-RELATED; 92.6 17 0.00037 39.1 23.1 182 169-380 546-739 (793)
117 cd00216 PQQ_DH Dehydrogenases 92.5 13 0.00028 37.4 26.2 204 118-335 61-327 (488)
118 COG4257 Vgb Streptogramin lyas 91.9 9.6 0.00021 34.5 17.2 225 133-395 84-314 (353)
119 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.6 8.9 0.00019 38.9 15.9 116 162-293 65-198 (527)
120 cd00216 PQQ_DH Dehydrogenases 91.4 17 0.00037 36.5 25.1 160 183-364 255-454 (488)
121 COG4257 Vgb Streptogramin lyas 91.3 11 0.00024 34.2 17.9 186 132-338 124-314 (353)
122 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.2 7.4 0.00016 39.5 14.9 115 209-335 63-197 (527)
123 KOG0316 Conserved WD40 repeat- 91.0 11 0.00023 33.4 17.0 176 184-380 81-258 (307)
124 KOG2997 F-box protein FBX9 [Ge 90.9 0.16 3.5E-06 46.2 2.4 46 67-112 106-156 (366)
125 PF12217 End_beta_propel: Cata 90.7 12 0.00026 33.5 16.7 204 159-368 77-334 (367)
126 PF02191 OLF: Olfactomedin-lik 90.6 13 0.00028 33.6 17.1 178 169-366 32-238 (250)
127 smart00284 OLF Olfactomedin-li 90.4 13 0.00029 33.5 18.5 179 169-365 36-242 (255)
128 cd00094 HX Hemopexin-like repe 90.3 11 0.00024 32.5 16.4 144 211-380 12-176 (194)
129 PRK13684 Ycf48-like protein; P 89.8 18 0.0004 34.3 20.7 195 142-367 35-234 (334)
130 PLN00033 photosystem II stabil 89.8 20 0.00044 34.8 21.1 205 137-368 161-391 (398)
131 cd00094 HX Hemopexin-like repe 89.8 12 0.00027 32.2 16.7 99 216-332 63-178 (194)
132 KOG0289 mRNA splicing factor [ 89.4 19 0.00041 34.6 14.5 122 208-343 350-476 (506)
133 KOG0286 G-protein beta subunit 88.9 18 0.00039 33.0 14.4 176 186-380 79-260 (343)
134 COG1520 FOG: WD40-like repeat 88.6 24 0.00052 34.0 21.4 152 164-335 65-225 (370)
135 KOG0281 Beta-TrCP (transducin 88.4 7.2 0.00016 36.3 10.8 109 206-330 320-429 (499)
136 smart00284 OLF Olfactomedin-li 88.3 19 0.00042 32.5 19.1 193 118-329 34-252 (255)
137 KOG0296 Angio-associated migra 88.2 23 0.0005 33.3 14.2 146 215-380 75-221 (399)
138 COG2706 3-carboxymuconate cycl 88.2 23 0.00049 33.2 15.8 153 130-295 165-332 (346)
139 COG3386 Gluconolactonase [Carb 88.1 23 0.0005 33.1 20.4 210 132-368 47-277 (307)
140 TIGR02658 TTQ_MADH_Hv methylam 87.7 26 0.00057 33.4 19.8 80 114-198 53-142 (352)
141 KOG1332 Vesicle coat complex C 87.6 20 0.00043 31.9 12.6 113 217-338 176-296 (299)
142 PRK01029 tolB translocation pr 87.2 32 0.0007 33.9 19.5 195 183-394 210-411 (428)
143 KOG1036 Mitotic spindle checkp 86.6 26 0.00056 32.2 17.6 91 133-244 76-166 (323)
144 KOG0291 WD40-repeat-containing 86.3 45 0.00097 34.6 20.2 137 185-336 331-473 (893)
145 PLN00181 protein SPA1-RELATED; 85.6 56 0.0012 35.2 24.4 174 133-331 556-740 (793)
146 KOG0316 Conserved WD40 repeat- 85.3 22 0.00048 31.5 11.5 137 184-334 39-178 (307)
147 PF12217 End_beta_propel: Cata 84.7 29 0.00064 31.1 15.3 195 163-366 22-257 (367)
148 PF02897 Peptidase_S9_N: Proly 83.9 45 0.00097 32.6 20.5 148 183-337 251-412 (414)
149 PF07734 FBA_1: F-box associat 83.8 24 0.00052 29.4 14.0 79 261-340 2-94 (164)
150 KOG0305 Anaphase promoting com 83.7 26 0.00056 34.8 12.8 173 185-380 198-377 (484)
151 TIGR03074 PQQ_membr_DH membran 83.5 67 0.0015 34.3 18.1 36 258-293 310-353 (764)
152 KOG1036 Mitotic spindle checkp 83.4 37 0.0008 31.2 16.9 173 185-379 36-209 (323)
153 PTZ00421 coronin; Provisional 83.1 55 0.0012 33.0 22.3 104 216-331 138-247 (493)
154 COG0823 TolB Periplasmic compo 82.1 54 0.0012 32.3 15.8 150 132-295 218-368 (425)
155 KOG1332 Vesicle coat complex C 81.6 39 0.00084 30.2 13.2 102 169-295 176-296 (299)
156 PF02191 OLF: Olfactomedin-lik 81.5 41 0.00088 30.4 18.3 156 158-328 70-246 (250)
157 PTZ00420 coronin; Provisional 81.0 70 0.0015 32.8 19.7 101 217-330 139-249 (568)
158 COG3391 Uncharacterized conser 80.4 58 0.0013 31.5 15.1 154 214-380 84-240 (381)
159 PRK01742 tolB translocation pr 79.3 67 0.0015 31.6 21.6 163 131-319 227-392 (429)
160 PLN03215 ascorbic acid mannose 79.1 35 0.00075 32.8 11.6 104 287-404 189-312 (373)
161 PF09910 DUF2139: Uncharacteri 78.5 55 0.0012 30.2 17.1 173 195-378 24-229 (339)
162 COG1520 FOG: WD40-like repeat 78.5 65 0.0014 30.9 23.9 149 118-292 68-225 (370)
163 KOG1897 Damage-specific DNA bi 76.7 1.2E+02 0.0025 32.9 18.3 133 184-327 807-942 (1096)
164 KOG0291 WD40-repeat-containing 75.7 1.1E+02 0.0023 32.0 19.7 140 210-368 311-456 (893)
165 COG0823 TolB Periplasmic compo 75.7 86 0.0019 30.9 14.8 148 184-338 218-368 (425)
166 TIGR03074 PQQ_membr_DH membran 75.4 47 0.001 35.4 12.5 33 258-294 188-222 (764)
167 KOG0263 Transcription initiati 75.2 96 0.0021 32.2 13.9 109 211-330 541-650 (707)
168 COG3823 Glutamine cyclotransfe 74.8 58 0.0012 28.5 12.1 57 210-272 50-108 (262)
169 PF06433 Me-amine-dh_H: Methyl 74.3 73 0.0016 30.1 12.0 195 118-332 106-323 (342)
170 KOG0266 WD40 repeat-containing 74.1 98 0.0021 30.8 17.7 190 161-380 208-410 (456)
171 KOG0643 Translation initiation 73.9 70 0.0015 29.0 16.6 225 132-379 74-319 (327)
172 KOG2321 WD40 repeat protein [G 73.6 21 0.00045 35.7 8.6 111 265-383 146-262 (703)
173 TIGR02658 TTQ_MADH_Hv methylam 72.1 94 0.002 29.7 22.5 119 118-247 12-142 (352)
174 PF02239 Cytochrom_D1: Cytochr 72.1 58 0.0013 31.4 11.5 191 118-334 5-207 (369)
175 KOG0278 Serine/threonine kinas 71.6 77 0.0017 28.5 13.0 136 233-380 165-300 (334)
176 KOG2048 WD40 repeat protein [G 68.8 1.5E+02 0.0032 30.6 20.0 88 308-409 439-526 (691)
177 KOG0289 mRNA splicing factor [ 68.3 1.2E+02 0.0026 29.5 18.2 117 160-295 351-471 (506)
178 KOG0649 WD40 repeat protein [G 67.9 91 0.002 27.9 11.0 87 242-336 98-193 (325)
179 KOG0285 Pleiotropic regulator 67.8 1.1E+02 0.0024 28.9 18.0 176 133-336 216-397 (460)
180 KOG0296 Angio-associated migra 67.0 1.2E+02 0.0025 28.8 15.7 141 169-332 77-223 (399)
181 PLN00033 photosystem II stabil 66.6 1.3E+02 0.0029 29.3 25.8 199 161-395 141-365 (398)
182 PRK01742 tolB translocation pr 65.7 1.4E+02 0.0031 29.3 26.2 176 183-380 227-405 (429)
183 COG2706 3-carboxymuconate cycl 65.6 1.2E+02 0.0027 28.5 26.2 244 118-380 51-324 (346)
184 COG4880 Secreted protein conta 65.6 1.4E+02 0.003 29.1 14.5 57 180-242 402-458 (603)
185 PRK01029 tolB translocation pr 63.0 1.6E+02 0.0035 29.0 21.8 74 263-338 336-412 (428)
186 PF15525 DUF4652: Domain of un 62.4 1E+02 0.0022 26.4 9.4 80 132-213 88-169 (200)
187 PF14781 BBS2_N: Ciliary BBSom 61.9 39 0.00084 27.2 6.5 60 267-336 66-134 (136)
188 KOG0266 WD40 repeat-containing 61.3 1.8E+02 0.0039 29.0 21.2 174 133-331 226-411 (456)
189 KOG1517 Guanine nucleotide bin 61.0 2.6E+02 0.0057 30.8 16.0 164 196-380 1154-1334(1387)
190 PF13859 BNR_3: BNR repeat-lik 59.3 1.6E+02 0.0034 27.7 14.5 178 209-398 2-218 (310)
191 KOG3545 Olfactomedin and relat 58.3 1.4E+02 0.003 26.8 10.6 199 133-366 11-237 (249)
192 PF07734 FBA_1: F-box associat 58.0 1.1E+02 0.0023 25.4 12.8 81 212-294 2-91 (164)
193 KOG4649 PQQ (pyrrolo-quinoline 57.4 1.5E+02 0.0033 26.9 13.0 92 233-334 33-130 (354)
194 KOG2321 WD40 repeat protein [G 55.7 2.4E+02 0.0052 28.7 15.8 108 169-294 147-266 (703)
195 KOG0278 Serine/threonine kinas 53.5 1.7E+02 0.0037 26.4 11.2 131 183-329 164-299 (334)
196 KOG0315 G-protein beta subunit 53.3 1.7E+02 0.0037 26.3 17.8 180 185-380 62-246 (311)
197 PF07433 DUF1513: Protein of u 52.5 2E+02 0.0043 26.8 19.0 106 158-272 6-119 (305)
198 PF13570 PQQ_3: PQQ-like domai 52.2 42 0.00092 20.1 4.4 25 304-330 16-40 (40)
199 PF08662 eIF2A: Eukaryotic tra 50.6 1.6E+02 0.0035 25.2 9.4 69 215-294 71-139 (194)
200 KOG0649 WD40 repeat protein [G 49.0 2E+02 0.0044 25.8 14.9 131 193-338 98-244 (325)
201 KOG2106 Uncharacterized conser 48.8 2.9E+02 0.0063 27.6 17.8 92 132-239 222-314 (626)
202 PTZ00420 coronin; Provisional 48.8 3.2E+02 0.007 28.1 17.4 148 169-336 139-300 (568)
203 KOG0306 WD40-repeat-containing 48.1 3.6E+02 0.0078 28.5 18.6 193 161-377 378-580 (888)
204 KOG0279 G protein beta subunit 47.4 2.3E+02 0.0049 26.0 17.0 182 169-380 76-263 (315)
205 KOG0265 U5 snRNP-specific prot 47.1 2.4E+02 0.0052 26.2 12.2 59 169-246 60-125 (338)
206 KOG0305 Anaphase promoting com 47.0 3.1E+02 0.0068 27.5 17.7 210 133-377 240-462 (484)
207 KOG0646 WD40 repeat protein [G 46.8 2.9E+02 0.0064 27.1 14.6 58 159-225 84-144 (476)
208 PF02239 Cytochrom_D1: Cytochr 46.2 1.6E+02 0.0035 28.3 9.5 134 183-331 15-160 (369)
209 PRK10115 protease 2; Provision 43.7 4.2E+02 0.0092 28.0 22.7 199 169-380 139-347 (686)
210 PF08662 eIF2A: Eukaryotic tra 43.3 89 0.0019 26.9 6.6 63 309-380 71-134 (194)
211 KOG0286 G-protein beta subunit 42.8 2.8E+02 0.006 25.7 19.2 187 158-368 99-294 (343)
212 PF13088 BNR_2: BNR repeat-lik 42.5 2.6E+02 0.0055 25.2 18.1 192 167-363 58-275 (275)
213 KOG0299 U3 snoRNP-associated p 42.1 3.5E+02 0.0075 26.6 16.6 192 160-380 206-413 (479)
214 PF07433 DUF1513: Protein of u 41.1 3.1E+02 0.0066 25.7 23.1 235 118-369 16-278 (305)
215 KOG0299 U3 snoRNP-associated p 40.6 3.7E+02 0.008 26.5 10.5 133 211-369 209-348 (479)
216 KOG0647 mRNA export protein (c 40.0 3.1E+02 0.0068 25.5 11.2 143 215-379 83-230 (347)
217 KOG4378 Nuclear protein COP1 [ 39.2 4.1E+02 0.0088 26.6 14.7 89 280-380 189-281 (673)
218 KOG2048 WD40 repeat protein [G 38.9 4.7E+02 0.01 27.1 19.8 57 161-224 30-89 (691)
219 KOG3881 Uncharacterized conser 38.0 3.8E+02 0.0081 25.8 12.3 143 169-331 162-322 (412)
220 KOG2445 Nuclear pore complex c 37.4 3.5E+02 0.0075 25.3 14.6 31 310-340 184-220 (361)
221 PF14781 BBS2_N: Ciliary BBSom 37.4 2.2E+02 0.0048 23.0 8.8 66 216-293 64-134 (136)
222 PF14583 Pectate_lyase22: Olig 37.3 4E+02 0.0086 25.9 14.9 229 118-367 46-302 (386)
223 KOG0272 U4/U6 small nuclear ri 34.5 4.5E+02 0.0097 25.6 13.9 118 260-399 310-429 (459)
224 COG3823 Glutamine cyclotransfe 34.3 3.3E+02 0.0071 24.0 8.8 97 259-366 50-148 (262)
225 KOG0646 WD40 repeat protein [G 33.6 4.8E+02 0.01 25.7 12.3 27 306-333 285-311 (476)
226 KOG3545 Olfactomedin and relat 33.3 3.6E+02 0.0079 24.3 14.5 166 186-380 12-203 (249)
227 KOG1446 Histone H3 (Lys4) meth 33.3 4E+02 0.0087 24.8 14.0 136 233-380 36-171 (311)
228 KOG4649 PQQ (pyrrolo-quinoline 32.6 3.9E+02 0.0085 24.4 20.4 192 162-380 16-218 (354)
229 PF03088 Str_synth: Strictosid 30.5 1.2E+02 0.0026 22.4 4.5 18 321-338 37-54 (89)
230 KOG0772 Uncharacterized conser 30.2 5.8E+02 0.013 25.7 11.3 65 307-380 373-446 (641)
231 KOG2111 Uncharacterized conser 28.4 5E+02 0.011 24.3 19.7 147 169-333 60-216 (346)
232 PF15525 DUF4652: Domain of un 28.2 3.9E+02 0.0084 23.0 10.8 73 182-254 86-161 (200)
233 PF08309 LVIVD: LVIVD repeat; 27.7 1.6E+02 0.0034 18.3 4.8 30 351-380 4-33 (42)
234 KOG0274 Cdc4 and related F-box 26.9 7E+02 0.015 25.5 21.9 171 184-380 311-483 (537)
235 PF04616 Glyco_hydro_43: Glyco 26.7 4.8E+02 0.01 23.5 15.9 154 207-364 11-195 (286)
236 KOG0265 U5 snRNP-specific prot 26.0 5.4E+02 0.012 23.9 11.1 98 215-332 58-166 (338)
237 KOG0282 mRNA splicing factor [ 25.2 6.9E+02 0.015 24.8 11.6 22 216-244 312-333 (503)
238 KOG0282 mRNA splicing factor [ 25.1 2.6E+02 0.0056 27.6 6.8 83 308-405 268-360 (503)
239 KOG1446 Histone H3 (Lys4) meth 25.1 5.6E+02 0.012 23.8 20.7 97 132-244 36-133 (311)
240 KOG4499 Ca2+-binding protein R 24.9 3.7E+02 0.0081 24.1 7.1 28 307-335 220-247 (310)
241 KOG0294 WD40 repeat-containing 24.8 5.9E+02 0.013 23.9 11.6 125 239-374 25-154 (362)
242 KOG1898 Splicing factor 3b, su 24.2 1E+03 0.022 26.5 13.6 155 133-301 854-1021(1205)
243 PF11768 DUF3312: Protein of u 23.0 3.7E+02 0.008 27.3 7.6 90 280-380 238-330 (545)
244 KOG0645 WD40 repeat protein [G 22.9 6E+02 0.013 23.3 18.3 160 216-401 27-196 (312)
245 PF13859 BNR_3: BNR repeat-lik 22.5 6.5E+02 0.014 23.6 14.2 179 161-340 3-217 (310)
246 COG4946 Uncharacterized protei 21.7 8.2E+02 0.018 24.5 15.7 180 183-380 58-257 (668)
247 KOG0308 Conserved WD40 repeat- 21.5 3.3E+02 0.0071 28.2 6.9 67 165-244 127-204 (735)
248 KOG0647 mRNA export protein (c 20.9 6.9E+02 0.015 23.3 14.8 124 184-320 94-220 (347)
249 PF14298 DUF4374: Domain of un 20.9 8.2E+02 0.018 24.2 11.6 114 264-380 285-425 (435)
250 PF14583 Pectate_lyase22: Olig 20.8 7.7E+02 0.017 24.0 9.1 79 261-341 43-122 (386)
251 KOG0315 G-protein beta subunit 20.7 6.4E+02 0.014 22.9 20.2 219 132-380 61-289 (311)
252 KOG0292 Vesicle coat complex C 20.5 1.1E+03 0.025 25.7 15.2 130 170-332 220-351 (1202)
253 COG3386 Gluconolactonase [Carb 20.3 7.2E+02 0.016 23.3 16.7 175 184-380 47-244 (307)
254 PF01011 PQQ: PQQ enzyme repea 20.2 2E+02 0.0044 16.9 3.8 19 310-328 10-28 (38)
255 TIGR03032 conserved hypothetic 20.0 2.8E+02 0.0062 26.0 5.8 34 306-340 209-242 (335)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-48 Score=389.50 Aligned_cols=343 Identities=24% Similarity=0.335 Sum_probs=280.0
Q ss_pred cceeeccccccccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH--HHHHhcccccCCccchhhhchHhHH
Q 014222 22 GLKTVAGAKKYVPGTKLCLQPDIKPSIHPTRSKPASGSRSRNQSPLLPGLPDD--LAIACLIRVPRVEHCKLRLVCKRWH 99 (428)
Q Consensus 22 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpdd--l~~~il~rlp~~~l~~~~~v~k~W~ 99 (428)
-+++++.|.+|+...|..++|+++..+|+|...+..+.......+++...+.. ++.+.. .|.
T Consensus 200 vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~----------------~~~ 263 (571)
T KOG4441|consen 200 VFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK----------------KYH 263 (571)
T ss_pred HHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH----------------HHh
Confidence 47788999999999999999999999999888777765544444444443332 122211 222
Q ss_pred hhhcCCh-hHHHHHhhC-cccceEEEEeeCCC---CceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEe
Q 014222 100 RLLSGNF-YYSLRKSLG-IAEEWIYVIKRDRE---GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFG 174 (428)
Q Consensus 100 ~l~~~~~-f~~~r~~~~-~~~~~l~v~gg~~~---~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~G 174 (428)
.+..... ...++.... ...+.||++||... ....+.+|||.+++|..+++|+.+ |..+++++++| +||++|
T Consensus 264 ~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~-~lYv~G 339 (571)
T KOG4441|consen 264 LLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP---RCRVGVAVLNG-KLYVVG 339 (571)
T ss_pred hCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc---cccccEEEECC-EEEEEc
Confidence 2222110 111222222 44688999998553 346899999999999999999976 88999999999 999999
Q ss_pred eeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCC
Q 014222 175 GKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTA 254 (428)
Q Consensus 175 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 254 (428)
|.+.....++++++|||.+|+|..+++|+.+|..+++++++|+||++||.+. ...++++|+|||.+++|+.+++|+..
T Consensus 340 G~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~ 417 (571)
T KOG4441|consen 340 GYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTR 417 (571)
T ss_pred cccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcc
Confidence 9984334789999999999999999999999999999999999999999973 56788999999999999999999999
Q ss_pred ccceEEEEECCEEEEEecCCCCc---eeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC----cEEEEEe
Q 014222 255 MVPFIGVVYEGKWFLKGLGSHRQ---VLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYD 327 (428)
Q Consensus 255 ~~~~~~~~~~g~lyv~Gg~~~~~---~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~----~~i~~yd 327 (428)
|+++++++++|+||++||..... .++++|||.+++|+.++++...+..+++++++++||++||.++ ..+++||
T Consensus 418 r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 418 RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc
Confidence 99999999999999999954443 5699999999999999998888888888999999999999876 3599999
Q ss_pred CCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe---EEEEEeecCCCCCCCccccccceeccCCcc
Q 014222 328 EVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS---ISLVDVSKSNGERGASAEHLWETISGKGQF 399 (428)
Q Consensus 328 ~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~---~~~v~~yd~~~~~~~~~~~~W~~~~~~~~~ 399 (428)
|++++|+.+..|.... .+++++..+++||++||... .+.+++|||.+ ++|+..++|...
T Consensus 498 p~~~~W~~v~~m~~~r------s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~-------d~W~~~~~~~~~ 559 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSPR------SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET-------DTWTEVTEPESG 559 (571)
T ss_pred CCCCceeEcccCcccc------ccccEEEECCEEEEEecccCccccceeEEcCCCC-------CceeeCCCcccc
Confidence 9999999998776553 45788999999999999654 67899999999 999999885433
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-46 Score=373.44 Aligned_cols=332 Identities=16% Similarity=0.208 Sum_probs=253.3
Q ss_pred cceeeccccccccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhcccccCCccchhhhchHhHHhh
Q 014222 22 GLKTVAGAKKYVPGTKLCLQPDIKPSIHPTRSKPASGSRSRNQSPLLPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRL 101 (428)
Q Consensus 22 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpddl~~~il~rlp~~~l~~~~~v~k~W~~l 101 (428)
-++++++|.+|+.+.|.. .++++.++|.|...+...... ...+++...| .|+.+
T Consensus 190 v~eav~~W~~~d~~~r~~-~~~ll~~VR~~~l~~~~~~~~-~~~~~i~~~~---------------------~c~~~--- 243 (557)
T PHA02713 190 KVTILLKWLEYNYITEEQ-LLCILSCIDIQNLDKKSRLLL-YSNKTINMYP---------------------SCIQF--- 243 (557)
T ss_pred HHHHHHHHHhcCHHHHHH-HhhhHhhhhHhhcchhhhhhh-cchHHHHhhH---------------------HHHHH---
Confidence 467789999999877655 568999998877655433211 1111111111 11111
Q ss_pred hcCChhHHHHHhhCcccceEEEEeeCCC-CceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCC
Q 014222 102 LSGNFYYSLRKSLGIAEEWIYVIKRDRE-GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLK 180 (428)
Q Consensus 102 ~~~~~f~~~r~~~~~~~~~l~v~gg~~~-~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~ 180 (428)
+... . ..+ ........+++.||... ....+++|||.+++|..+++||.+ +..++++++++ +||++||.+...
T Consensus 244 l~~a-~-~~~-~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~-~IYviGG~~~~~ 316 (557)
T PHA02713 244 LLDN-K-QNR-NIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDN-EIIIAGGYNFNN 316 (557)
T ss_pred Hhhh-h-hhc-ccCCcceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECC-EEEEEcCCCCCC
Confidence 0000 0 000 00001134555444211 123688999999999999999986 67888999988 899999975333
Q ss_pred CCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEE
Q 014222 181 GSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIG 260 (428)
Q Consensus 181 ~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~ 260 (428)
...+++++|||.+++|..+++|+.+|..+++++++|+||++||.+. ....+++++|||.+++|+.+++||.++..+++
T Consensus 317 ~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~--~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~ 394 (557)
T PHA02713 317 PSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNG--TNVERTIECYTMGDDKWKMLPDMPIALSSYGM 394 (557)
T ss_pred CccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCC--CCCCceEEEEECCCCeEEECCCCCcccccccE
Confidence 3578999999999999999999999999999999999999999853 33467899999999999999999999999999
Q ss_pred EEECCEEEEEecCCCC--------------------ceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC
Q 014222 261 VVYEGKWFLKGLGSHR--------------------QVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG 320 (428)
Q Consensus 261 ~~~~g~lyv~Gg~~~~--------------------~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~ 320 (428)
++++|+||++||.... ...+++|||++++|+.+++++.++..+++++++|+||++||.++
T Consensus 395 ~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~ 474 (557)
T PHA02713 395 CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKD 474 (557)
T ss_pred EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCC
Confidence 9999999999985421 24589999999999999987777767778899999999999753
Q ss_pred -----cEEEEEeCCC-CceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCCCCCCccccccceec
Q 014222 321 -----CKIRVYDEVT-DSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNGERGASAEHLWETIS 394 (428)
Q Consensus 321 -----~~i~~yd~~~-~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~~ 394 (428)
+.+++|||++ ++|+.++.||.++ ..+++++++|+||++||..+...+++||+.+ ++|+.++
T Consensus 475 ~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~-------~~W~~~~ 541 (557)
T PHA02713 475 EKNVKTCIFRYNTNTYNGWELITTTESRL------SALHTILHDNTIMMLHCYESYMLQDTFNVYT-------YEWNHIC 541 (557)
T ss_pred CCccceeEEEecCCCCCCeeEccccCccc------ccceeEEECCEEEEEeeecceeehhhcCccc-------ccccchh
Confidence 3589999999 8999999876543 4688899999999999988877899999999 9999988
Q ss_pred cCCcccc
Q 014222 395 GKGQFKT 401 (428)
Q Consensus 395 ~~~~~~~ 401 (428)
+-.....
T Consensus 542 ~~~~~~~ 548 (557)
T PHA02713 542 HQHSNSY 548 (557)
T ss_pred hhcCCce
Confidence 7644433
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.7e-42 Score=340.31 Aligned_cols=294 Identities=30% Similarity=0.458 Sum_probs=241.6
Q ss_pred ccceeeccccccccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhcccccCCccchhhhchHhHHh
Q 014222 21 AGLKTVAGAKKYVPGTKLCLQPDIKPSIHPTRSKPASGSRSRNQSPLLPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHR 100 (428)
Q Consensus 21 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpddl~~~il~rlp~~~l~~~~~v~k~W~~ 100 (428)
.|.+.+.++++++ ..|..++..+.++++++.. ....-..+.+... ..-+......+....+.|..
T Consensus 251 ~c~~~l~ea~~~~------~~~~~~~~~~~~~t~~r~~--~~~~l~~vGG~~~-------~~~~~~~ve~yd~~~~~w~~ 315 (571)
T KOG4441|consen 251 ACRDLLDEAKKYH------LLPQRRPVMQSPRTRPRRS--VSGKLVAVGGYNR-------QGQSLRSVECYDPKTNEWSS 315 (571)
T ss_pred HHHHHHHHHHHHh------hCcccCccccCCCcccCcC--CCCeEEEECCCCC-------CCcccceeEEecCCcCcEee
Confidence 4677788888665 7777777788888888851 1111112333322 11222333446667788999
Q ss_pred hhcCChhHHHHHhhCcc--cceEEEEeeCCC---CceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEee
Q 014222 101 LLSGNFYYSLRKSLGIA--EEWIYVIKRDRE---GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGG 175 (428)
Q Consensus 101 l~~~~~f~~~r~~~~~~--~~~l~v~gg~~~---~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG 175 (428)
+...+. .|..++.+ ++.||++||... ..+++++|||.+++|..+++|..+ |..+++++++| +||++||
T Consensus 316 ~a~m~~---~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~---R~~~~v~~l~g-~iYavGG 388 (571)
T KOG4441|consen 316 LAPMPS---PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK---RSDFGVAVLDG-KLYAVGG 388 (571)
T ss_pred cCCCCc---ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc---cccceeEEECC-EEEEEec
Confidence 999884 55555444 899999999662 336899999999999999999997 99999999999 9999999
Q ss_pred eCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCc
Q 014222 176 KDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAM 255 (428)
Q Consensus 176 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~ 255 (428)
.++.. ..+++++|||.+++|..+++|+.+|+++++++++++||++||.+.. ...++++++|||.+++|+.+++|+.+|
T Consensus 389 ~dg~~-~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~-~~~l~sve~YDP~t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 389 FDGEK-SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS-SNCLNSVECYDPETNTWTLIAPMNTRR 466 (571)
T ss_pred ccccc-ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC-ccccceEEEEcCCCCceeecCCccccc
Confidence 99654 7889999999999999999999999999999999999999998743 447899999999999999999999999
Q ss_pred cceEEEEECCEEEEEecCCC--CceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC----cEEEEEeCC
Q 014222 256 VPFIGVVYEGKWFLKGLGSH--RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYDEV 329 (428)
Q Consensus 256 ~~~~~~~~~g~lyv~Gg~~~--~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~----~~i~~yd~~ 329 (428)
.++++++++++||++||... ...++++|||++++|+.++++...+...++++++++||++||.++ +.+..|||+
T Consensus 467 ~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 467 SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 99999999999999999654 234589999999999999876666666667899999999999877 479999999
Q ss_pred CCceeeCcc
Q 014222 330 TDSWSKHID 338 (428)
Q Consensus 330 ~~~W~~v~~ 338 (428)
+++|+....
T Consensus 547 ~d~W~~~~~ 555 (571)
T KOG4441|consen 547 TDTWTEVTE 555 (571)
T ss_pred CCceeeCCC
Confidence 999999987
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=328.05 Aligned_cols=334 Identities=16% Similarity=0.182 Sum_probs=249.9
Q ss_pred ccceeeccccccccCCCcccCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCChH--HHHHHhcccccCCccchhh
Q 014222 21 AGLKTVAGAKKYVPGTKLCLQPDIKPSIHPTRSKPASGSRSRN------QSPLLPGLPD--DLAIACLIRVPRVEHCKLR 92 (428)
Q Consensus 21 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~lpd--dl~~~il~rlp~~~l~~~~ 92 (428)
..+++++.|.+|+...|..+++++.+++|.+..++..+..... ++.++ .-++ .++.+..
T Consensus 170 ~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------ 236 (534)
T PHA03098 170 VVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK------------ 236 (534)
T ss_pred HHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH------------
Confidence 3477889999999999999999999999988766544322110 11111 0000 0011100
Q ss_pred hchHhHHhhhcCChhHHHHHhhCcccceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEE
Q 014222 93 LVCKRWHRLLSGNFYYSLRKSLGIAEEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYL 172 (428)
Q Consensus 93 ~v~k~W~~l~~~~~f~~~r~~~~~~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv 172 (428)
... .... .+ .......+++.+|.......+.+|++.+++|..+++.+. +..+++++.++ +||+
T Consensus 237 ----~~~----~~~~--~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~lyv 299 (534)
T PHA03098 237 ----YNL----NKIL--PR--SSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNN-VIYF 299 (534)
T ss_pred ----hcc----cCCC--cC--ccCCCcceEeecccchhhceeeecchhhhhcccccCccc----cccceEEEECC-EEEE
Confidence 000 0000 01 111233444444432223456789999999999876653 33567888888 8999
Q ss_pred EeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCC
Q 014222 173 FGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252 (428)
Q Consensus 173 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 252 (428)
+||........+++++||+.+++|..+++|+.+|..+++++++++||++||.+. ....+++++||+.+++|+.++++|
T Consensus 300 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp 377 (534)
T PHA03098 300 IGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLI 377 (534)
T ss_pred ECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcC
Confidence 999876544567899999999999999999999999999999999999999863 345678999999999999999999
Q ss_pred CCccceEEEEECCEEEEEecCCC---CceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC-------cE
Q 014222 253 TAMVPFIGVVYEGKWFLKGLGSH---RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG-------CK 322 (428)
Q Consensus 253 ~~~~~~~~~~~~g~lyv~Gg~~~---~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~-------~~ 322 (428)
.+|..+++++++|+||++||... ....+++||+.+++|+.+++++.++..+++++.+++||++||.+. +.
T Consensus 378 ~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 378 FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccce
Confidence 99999999999999999999432 234589999999999999886666666667889999999999643 35
Q ss_pred EEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe---EEEEEeecCCCCCCCccccccceeccCCcc
Q 014222 323 IRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS---ISLVDVSKSNGERGASAEHLWETISGKGQF 399 (428)
Q Consensus 323 i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~---~~~v~~yd~~~~~~~~~~~~W~~~~~~~~~ 399 (428)
+++||+++++|+.++.++.+. ..++++..+++|||+||... .+.+++||+.+ +.|+.++.+|..
T Consensus 458 v~~yd~~~~~W~~~~~~~~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~-------~~W~~~~~~p~~ 524 (534)
T PHA03098 458 VESYNPVTNKWTELSSLNFPR------INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT-------NTWTLFCKFPKV 524 (534)
T ss_pred EEEecCCCCceeeCCCCCccc------ccceEEEECCEEEEEcCCcCCcccceeEEEeCCC-------CEEEecCCCccc
Confidence 999999999999998765432 34667778999999999653 46899999999 999999988765
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=315.81 Aligned_cols=243 Identities=16% Similarity=0.238 Sum_probs=204.8
Q ss_pred cchhhhchHhHHhhhcCChhHHHHHhhC--cccceEEEEeeCC-C--CceeEEEEeCCCCceEeCCCCCCCCccccccEE
Q 014222 88 HCKLRLVCKRWHRLLSGNFYYSLRKSLG--IAEEWIYVIKRDR-E--GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGC 162 (428)
Q Consensus 88 l~~~~~v~k~W~~l~~~~~f~~~r~~~~--~~~~~l~v~gg~~-~--~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~ 162 (428)
...+....+.|..+...|. .+..++ ..++.||++||.. . ...++++|||.+++|..+++|+.+ |..+++
T Consensus 274 v~~yd~~~~~W~~l~~mp~---~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~~~ 347 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPN---HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRFSL 347 (557)
T ss_pred EEEEeCCCCeEEECCCCCc---cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhceeE
Confidence 3456777889999988774 343333 2389999999853 1 236799999999999999999986 889999
Q ss_pred EEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCC--------------
Q 014222 163 AVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGV-------------- 228 (428)
Q Consensus 163 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-------------- 228 (428)
++++| +||++||.++.. ..+++++|||.+++|..+++||.+|..+++++++|+||++||.+...
T Consensus 348 ~~~~g-~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVIDD-TIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEECC-EEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 99999 999999987543 56789999999999999999999999999999999999999975211
Q ss_pred --CCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCC---ceeEEEEeCCC-CCeEecCCCCcCCCC
Q 014222 229 --HRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHR---QVLSEAYQPET-DSWFPVYDGMVAGWR 302 (428)
Q Consensus 229 --~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~---~~~i~~yd~~~-~~W~~~~~~~~~~~~ 302 (428)
....+++++|||.+++|+.+++|+.+|..+++++++|+||++||.... ...+++|||.+ ++|+.+++++..+..
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 112578999999999999999999999999999999999999985422 23479999999 899999987777777
Q ss_pred CceEEECCeEEEEEccCC-cEEEEEeCCCCceeeCcc
Q 014222 303 NPSASLNRHLYALDCKDG-CKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 303 ~~~~~~~~~lyv~gG~~~-~~i~~yd~~~~~W~~v~~ 338 (428)
.++++++|+||++||.++ ..+++||+.+++|+.+..
T Consensus 506 ~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 506 LHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 778999999999999876 468999999999999864
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.7e-37 Score=292.42 Aligned_cols=281 Identities=18% Similarity=0.210 Sum_probs=207.1
Q ss_pred hHHhhhcCC-hhHHHHHhhCcc--cceEEEEeeCCC--C--ceeEEEEeCCCCceEeCCCCCCCC-ccccccEEEEEeCC
Q 014222 97 RWHRLLSGN-FYYSLRKSLGIA--EEWIYVIKRDRE--G--KISWHAFDPIYQLWQPLPPIPKEY-SEALGFGCAVLSGC 168 (428)
Q Consensus 97 ~W~~l~~~~-~f~~~r~~~~~~--~~~l~v~gg~~~--~--~~~~~~yd~~~~~W~~l~~~~~~~-~~r~~~~~~~~~~~ 168 (428)
.|..+.... ....+|..++.+ ++.|||+||... . .+++++||+.+++|..+++++..+ ..+.+++++++++
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~- 86 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT- 86 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC-
Confidence 366665421 112245444333 889999998532 1 247999999999999998775322 1234677888888
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCC-----CcCCcceeeEEECCEEEEEccccCCC----CCCCCeEEEEe
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDM-----LRRRHFFGSCVINNCLYVAGGENGGV----HRSLRSAEVYD 239 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~v~~yd 239 (428)
+||++||.+... ..+++++||+.+++|+.+++| |.+|..|++++.+++|||+||.+... ...++++++||
T Consensus 87 ~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 87 KLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 899999986543 567999999999999999887 78999999999999999999986321 11346899999
Q ss_pred CCCCceEEcCCCC---CCccceEEEEECCEEEEEecCCC----------CceeEEEEeCCCCCeEecCC---CCcCCCCC
Q 014222 240 PNKNRWSFISDMS---TAMVPFIGVVYEGKWFLKGLGSH----------RQVLSEAYQPETDSWFPVYD---GMVAGWRN 303 (428)
Q Consensus 240 ~~t~~W~~~~~~p---~~~~~~~~~~~~g~lyv~Gg~~~----------~~~~i~~yd~~~~~W~~~~~---~~~~~~~~ 303 (428)
+.+++|+.++++. .+|..+++++++++||++||... ....+++||+.+++|++++. .|.++..+
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~ 245 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF 245 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee
Confidence 9999999998664 67888999999999999987431 12358999999999999864 24445556
Q ss_pred ceEEECCeEEEEEccC-------------CcEEEEEeCCCCceeeCcccc-cccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 304 PSASLNRHLYALDCKD-------------GCKIRVYDEVTDSWSKHIDSK-MHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 304 ~~~~~~~~lyv~gG~~-------------~~~i~~yd~~~~~W~~v~~~~-~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
++++++++||++||.. .+++++||+++++|+.+.... ++.++.+...+++.+..+++|||+||...
T Consensus 246 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 246 AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred eeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence 6788999999999962 137999999999999986421 12233322223444455569999999743
Q ss_pred ----EEEEEeecCC
Q 014222 370 ----ISLVDVSKSN 379 (428)
Q Consensus 370 ----~~~v~~yd~~ 379 (428)
..+++.|+..
T Consensus 326 ~~~~~~~~~~~~~~ 339 (341)
T PLN02153 326 TNERTDDLYFYAVN 339 (341)
T ss_pred CCccccceEEEecc
Confidence 3577777654
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1e-35 Score=293.37 Aligned_cols=281 Identities=19% Similarity=0.197 Sum_probs=213.0
Q ss_pred HhHHhhhcCChhHHHHHhhCcc--cceEEEEeeCCC--C-c-eeEEEEeCCCCceEeCCCCCCCCc-cccccEEEEEeCC
Q 014222 96 KRWHRLLSGNFYYSLRKSLGIA--EEWIYVIKRDRE--G-K-ISWHAFDPIYQLWQPLPPIPKEYS-EALGFGCAVLSGC 168 (428)
Q Consensus 96 k~W~~l~~~~~f~~~r~~~~~~--~~~l~v~gg~~~--~-~-~~~~~yd~~~~~W~~l~~~~~~~~-~r~~~~~~~~~~~ 168 (428)
.+|..+....+...+|..++.+ ++.||++||... . . +++++||+.+++|..++++...+. .+..++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~- 229 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS- 229 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-
Confidence 5788777643333356555443 789999998532 1 2 469999999999999876532221 245778888888
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCC---CcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCce
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDM---LRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRW 245 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W 245 (428)
+||++||.+... ..+++++||+.+++|++++++ |.+|..|++++++++||++||.+. ....+++++||+.+++|
T Consensus 230 ~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~--~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 230 TLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA--TARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC--CCCcceEEEEECCCCEE
Confidence 899999987543 678999999999999999888 789999999999999999999863 34567899999999999
Q ss_pred EEcCC---CCCCccceEEEEECCEEEEEecCCCC-ceeEEEEeCCCCCeEecCCC---CcCCCCCceEEECCeEEEEEcc
Q 014222 246 SFISD---MSTAMVPFIGVVYEGKWFLKGLGSHR-QVLSEAYQPETDSWFPVYDG---MVAGWRNPSASLNRHLYALDCK 318 (428)
Q Consensus 246 ~~~~~---~p~~~~~~~~~~~~g~lyv~Gg~~~~-~~~i~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~lyv~gG~ 318 (428)
+.++. ++.+|..+++++++++||++||.... ...+++||+.+++|+.++.. |.++..+++++++++||++||.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 99874 56788889999999999999985432 34589999999999998653 4455556678899999999996
Q ss_pred CC-------------cEEEEEeCCCCceeeCccccc--ccCCcccccceEEEEe-C-CeEEEEeCCCe----EEEEEeec
Q 014222 319 DG-------------CKIRVYDEVTDSWSKHIDSKM--HLGNSRALEAAALVPL-N-GKLCIIRNNMS----ISLVDVSK 377 (428)
Q Consensus 319 ~~-------------~~i~~yd~~~~~W~~v~~~~~--~~~~~~~~~~~~~~~~-~-~~lyv~GG~~~----~~~v~~yd 377 (428)
.. +++++||+.+++|+.+..++. ..+..|.+.++.+... + +.|+++||... .++++.++
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~ 466 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYG 466 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEe
Confidence 42 469999999999999986542 2344443333333323 3 45999999743 45677776
Q ss_pred CCC
Q 014222 378 SNG 380 (428)
Q Consensus 378 ~~~ 380 (428)
+++
T Consensus 467 ~~~ 469 (470)
T PLN02193 467 IDS 469 (470)
T ss_pred cCC
Confidence 654
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.7e-35 Score=279.45 Aligned_cols=249 Identities=17% Similarity=0.219 Sum_probs=193.5
Q ss_pred CCCCceEeCCCCCC-CCccccccEEEEEeCCEEEEEeeeCCCC-CCCceEEEEECCCCceeeCCCCC-cCC---cceeeE
Q 014222 139 PIYQLWQPLPPIPK-EYSEALGFGCAVLSGCHLYLFGGKDPLK-GSMRRVIFYSARTNKWHRAPDML-RRR---HFFGSC 212 (428)
Q Consensus 139 ~~~~~W~~l~~~~~-~~~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~~-~~r---~~~~~~ 212 (428)
+...+|..++.... .+.+|..|++++.++ +|||+||..... ...+++++||+.+++|+.++++. .+| .+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGD-KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECC-EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEE
Confidence 46778999977321 122488999999988 899999985432 23578999999999999998764 344 367889
Q ss_pred EECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCC-----CCCccceEEEEECCEEEEEecCCCC--------cee
Q 014222 213 VINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDM-----STAMVPFIGVVYEGKWFLKGLGSHR--------QVL 279 (428)
Q Consensus 213 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~~~~~~~~~~~g~lyv~Gg~~~~--------~~~ 279 (428)
+++++||++||... ....+++++||+.+++|+.++++ |.+|..+++++++++|||+||.... ...
T Consensus 83 ~~~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 83 AVGTKLYIFGGRDE--KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred EECCEEEEECCCCC--CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 99999999999863 34467899999999999999877 7789999999999999999995421 235
Q ss_pred EEEEeCCCCCeEecCCCC---cCCCCCceEEECCeEEEEEccC------------CcEEEEEeCCCCceeeCcccccccC
Q 014222 280 SEAYQPETDSWFPVYDGM---VAGWRNPSASLNRHLYALDCKD------------GCKIRVYDEVTDSWSKHIDSKMHLG 344 (428)
Q Consensus 280 i~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~lyv~gG~~------------~~~i~~yd~~~~~W~~v~~~~~~~~ 344 (428)
+++||+++++|+.++.+. ..+..+++++++++||++||.. .+++++||+++++|+++..... .+
T Consensus 161 v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-~P 239 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-KP 239 (341)
T ss_pred EEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC-CC
Confidence 899999999999987642 3444556778999999998853 1479999999999999975321 12
Q ss_pred CcccccceEEEEeCCeEEEEeCCC------------eEEEEEeecCCCCCCCccccccceec-----cCCccc
Q 014222 345 NSRALEAAALVPLNGKLCIIRNNM------------SISLVDVSKSNGERGASAEHLWETIS-----GKGQFK 400 (428)
Q Consensus 345 ~~~~~~~~~~~~~~~~lyv~GG~~------------~~~~v~~yd~~~~~~~~~~~~W~~~~-----~~~~~~ 400 (428)
..| ..++++.++++|||+||.. ..+++++||+.+ ++|+.++ .+|+.+
T Consensus 240 ~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-------~~W~~~~~~~~~~~pr~~ 303 (341)
T PLN02153 240 SAR--SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-------LVWEKLGECGEPAMPRGW 303 (341)
T ss_pred CCc--ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-------cEEEeccCCCCCCCCCcc
Confidence 222 3578889999999999962 134799999999 9999885 566543
No 9
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.9e-34 Score=284.35 Aligned_cols=267 Identities=16% Similarity=0.203 Sum_probs=206.0
Q ss_pred cceEEEEeeCC-CCcee--EEEEeCCC----CceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCC-CCceEEEE
Q 014222 118 EEWIYVIKRDR-EGKIS--WHAFDPIY----QLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKG-SMRRVIFY 189 (428)
Q Consensus 118 ~~~l~v~gg~~-~~~~~--~~~yd~~~----~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~-~~~~v~~y 189 (428)
++.|+.|+|.. ....+ ++.++|.+ ++|.+++++...+.+|..|++++.++ +||++||...... ..+++++|
T Consensus 120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~-~iyv~GG~~~~~~~~~~~v~~y 198 (470)
T PLN02193 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGN-KIYSFGGEFTPNQPIDKHLYVF 198 (470)
T ss_pred CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECC-EEEEECCcCCCCCCeeCcEEEE
Confidence 56666666533 22333 44557755 79999987543334589999999988 8999999753322 34689999
Q ss_pred ECCCCceeeCCCC---Cc-CCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCC---CCCccceEEEE
Q 014222 190 SARTNKWHRAPDM---LR-RRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDM---STAMVPFIGVV 262 (428)
Q Consensus 190 d~~t~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~~~~~~~~~ 262 (428)
|+.+++|+.++++ |. +|..+++++++++||++||.+. ...++++++||+.+++|+.++++ |.+|..+++++
T Consensus 199 D~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~--~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~ 276 (470)
T PLN02193 199 DLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA--SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA 276 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC--CCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE
Confidence 9999999988653 33 3567889999999999999863 34568999999999999999887 78899999999
Q ss_pred ECCEEEEEecCCCC--ceeEEEEeCCCCCeEecCC---CCcCCCCCceEEECCeEEEEEccCC---cEEEEEeCCCCcee
Q 014222 263 YEGKWFLKGLGSHR--QVLSEAYQPETDSWFPVYD---GMVAGWRNPSASLNRHLYALDCKDG---CKIRVYDEVTDSWS 334 (428)
Q Consensus 263 ~~g~lyv~Gg~~~~--~~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~lyv~gG~~~---~~i~~yd~~~~~W~ 334 (428)
++++|||+||.... ...+++||+.+++|+.++. ++..+..+.+++++++||++||.++ +++++||+++++|+
T Consensus 277 ~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 277 DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 99999999996432 3458999999999999865 2333444556789999999999764 57999999999999
Q ss_pred eCcccccccCCcccccceEEEEeCCeEEEEeCCC------------eEEEEEeecCCCCCCCccccccceeccCC
Q 014222 335 KHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNM------------SISLVDVSKSNGERGASAEHLWETISGKG 397 (428)
Q Consensus 335 ~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~------------~~~~v~~yd~~~~~~~~~~~~W~~~~~~~ 397 (428)
++..+.. .+..| ..++++.++++|||+||.. ..+++++||+.+ ++|+.++.++
T Consensus 357 ~~~~~g~-~P~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-------~~W~~~~~~~ 421 (470)
T PLN02193 357 QVETFGV-RPSER--SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-------LQWERLDKFG 421 (470)
T ss_pred EeccCCC-CCCCc--ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-------CEEEEcccCC
Confidence 9976521 12222 3577889999999999953 135799999999 9999987653
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9e-35 Score=277.74 Aligned_cols=241 Identities=19% Similarity=0.189 Sum_probs=187.1
Q ss_pred ccceEEEEeeCCCCceeEEEEeC--CCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCC-----CCCceEEEE
Q 014222 117 AEEWIYVIKRDREGKISWHAFDP--IYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLK-----GSMRRVIFY 189 (428)
Q Consensus 117 ~~~~l~v~gg~~~~~~~~~~yd~--~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~y 189 (428)
.++.|||+||.. ..++++||+ .+++|..+++||.. .|..++++++++ +||++||..... ...+++++|
T Consensus 16 ~~~~vyv~GG~~--~~~~~~~d~~~~~~~W~~l~~~p~~--~R~~~~~~~~~~-~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 16 IGDKVYVGLGSA--GTSWYKLDLKKPSKGWQKIADFPGG--PRNQAVAAAIDG-KLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred ECCEEEEEcccc--CCeeEEEECCCCCCCceECCCCCCC--CcccceEEEECC-EEEEEeCCCCCCCCCcceecccEEEE
Confidence 388999999853 357889996 67899999999842 378889999988 899999985321 146789999
Q ss_pred ECCCCceeeCC-CCCcCCcceeeE-EECCEEEEEccccCCC--------------------------------CCCCCeE
Q 014222 190 SARTNKWHRAP-DMLRRRHFFGSC-VINNCLYVAGGENGGV--------------------------------HRSLRSA 235 (428)
Q Consensus 190 d~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~--------------------------------~~~~~~v 235 (428)
|+.+++|+.++ +++.+|..++++ +++++||++||.+... ....+++
T Consensus 91 d~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 91 DPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred ECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 99999999997 456777777666 7899999999975210 0013789
Q ss_pred EEEeCCCCceEEcCCCCC-CccceEEEEECCEEEEEecCCCC---ceeEEEE--eCCCCCeEecCCCCcCCC-------C
Q 014222 236 EVYDPNKNRWSFISDMST-AMVPFIGVVYEGKWFLKGLGSHR---QVLSEAY--QPETDSWFPVYDGMVAGW-------R 302 (428)
Q Consensus 236 ~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~g~lyv~Gg~~~~---~~~i~~y--d~~~~~W~~~~~~~~~~~-------~ 302 (428)
++|||.+++|+.+++||. ++..+++++++++|||+||.... ...++.| |+.+++|+.+++++.++. .
T Consensus 171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG 250 (346)
T ss_pred EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE
Confidence 999999999999999986 68888899999999999985321 1224455 567789999988654321 1
Q ss_pred CceEEECCeEEEEEccCC---------------------cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeE
Q 014222 303 NPSASLNRHLYALDCKDG---------------------CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKL 361 (428)
Q Consensus 303 ~~~~~~~~~lyv~gG~~~---------------------~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~l 361 (428)
+.+++++++||++||.+. ..+++||+++++|+.+..||.+. ..++++..+++|
T Consensus 251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~------~~~~~~~~~~~i 324 (346)
T TIGR03547 251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL------AYGVSVSWNNGV 324 (346)
T ss_pred EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc------eeeEEEEcCCEE
Confidence 225678999999999641 25899999999999999876543 346778899999
Q ss_pred EEEeCCC
Q 014222 362 CIIRNNM 368 (428)
Q Consensus 362 yv~GG~~ 368 (428)
||+||..
T Consensus 325 yv~GG~~ 331 (346)
T TIGR03547 325 LLIGGEN 331 (346)
T ss_pred EEEeccC
Confidence 9999964
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.6e-34 Score=273.03 Aligned_cols=241 Identities=17% Similarity=0.218 Sum_probs=190.2
Q ss_pred ccceEEEEeeCCCCc------------eeEEEEe-CCCC-ceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCC
Q 014222 117 AEEWIYVIKRDREGK------------ISWHAFD-PIYQ-LWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGS 182 (428)
Q Consensus 117 ~~~~l~v~gg~~~~~------------~~~~~yd-~~~~-~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~ 182 (428)
.++.||++||.+... .++++|+ +..+ +|..+++||.+ |..++++++++ +||++||.+... .
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~---r~~~~~~~~~~-~lyviGG~~~~~-~ 86 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE---AAYGASVSVEN-GIYYIGGSNSSE-R 86 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc---ccceEEEEECC-EEEEEcCCCCCC-C
Confidence 488999999964321 3577775 4323 79999999876 66677777777 899999987543 5
Q ss_pred CceEEEEECCCCce----eeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCC-Cccc
Q 014222 183 MRRVIFYSARTNKW----HRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMST-AMVP 257 (428)
Q Consensus 183 ~~~v~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~~~~ 257 (428)
.+++++||+.+++| +.+++||.+|..+++++++++||++||... ....+++++||+.+++|+.++++|. +|..
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~ 164 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN--GKPSNKSYLFNLETQEWFELPDFPGEPRVQ 164 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC--CccCceEEEEcCCCCCeeECCCCCCCCCCc
Confidence 78999999999988 788999999999999999999999999753 3346899999999999999998874 7888
Q ss_pred eEEEEECCEEEEEecCCCC-ceeEEEEeCCCCCeEecCCCCc-----CCCCCce-EEECCeEEEEEccCC----------
Q 014222 258 FIGVVYEGKWFLKGLGSHR-QVLSEAYQPETDSWFPVYDGMV-----AGWRNPS-ASLNRHLYALDCKDG---------- 320 (428)
Q Consensus 258 ~~~~~~~g~lyv~Gg~~~~-~~~i~~yd~~~~~W~~~~~~~~-----~~~~~~~-~~~~~~lyv~gG~~~---------- 320 (428)
+.+++++++|||+||.... ...+++||+++++|+.++++.. .....++ ++.+++||++||.+.
T Consensus 165 ~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 244 (323)
T TIGR03548 165 PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDL 244 (323)
T ss_pred ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhh
Confidence 8888999999999996432 2347899999999999986421 1122233 345799999999752
Q ss_pred --------------------------cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 321 --------------------------CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 321 --------------------------~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
+++++||+.+++|+.++.+|.. ++ .+++++.++++||++||...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r----~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 245 ATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF-AR----CGAALLLTGNNIFSINGELK 314 (323)
T ss_pred hhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc-cc----CchheEEECCEEEEEecccc
Confidence 4699999999999999876522 12 35778999999999999643
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=288.79 Aligned_cols=208 Identities=19% Similarity=0.267 Sum_probs=179.0
Q ss_pred EEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCC
Q 014222 162 CAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPN 241 (428)
Q Consensus 162 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 241 (428)
+++.++ .||++||.++. ...+.++.|||.+++|..+++|+.+|..+++++++|+||++||.+. ..++++||+.
T Consensus 267 ~~~~~~-~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-----~~sve~ydp~ 339 (480)
T PHA02790 267 STHVGE-VVYLIGGWMNN-EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-----PTSVERWFHG 339 (480)
T ss_pred eEEECC-EEEEEcCCCCC-CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-----CCceEEEECC
Confidence 344667 89999998643 3567899999999999999999999999999999999999999742 2679999999
Q ss_pred CCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCc
Q 014222 242 KNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGC 321 (428)
Q Consensus 242 t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~ 321 (428)
+++|+.+++||.+|..+++++++|+||++||......++++|||.+++|+.+++++.++..+++++++|+||++||
T Consensus 340 ~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---- 415 (480)
T PHA02790 340 DAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---- 415 (480)
T ss_pred CCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC----
Confidence 9999999999999999999999999999999654445689999999999999886666666677899999999998
Q ss_pred EEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe---EEEEEeecCCCCCCCcccccccee
Q 014222 322 KIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS---ISLVDVSKSNGERGASAEHLWETI 393 (428)
Q Consensus 322 ~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~---~~~v~~yd~~~~~~~~~~~~W~~~ 393 (428)
.+++||+++++|+.++.|+.+. .++++++++|+||++||... ...+++|||.+ ++|+..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r------~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~-------~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPR------DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT-------YSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCc------cccEEEEECCEEEEECCcCCCcccceEEEEECCC-------CeEEec
Confidence 3688999999999998775432 35788899999999999642 46799999999 999653
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.5e-34 Score=276.71 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=195.0
Q ss_pred ccceEEEEeeCCCCceeEEEEeCC--CCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCC-C----CCCceEEEE
Q 014222 117 AEEWIYVIKRDREGKISWHAFDPI--YQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPL-K----GSMRRVIFY 189 (428)
Q Consensus 117 ~~~~l~v~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~-~----~~~~~v~~y 189 (428)
.++.|||+||.. ...++.||+. +++|..++++|.. .|..++++++++ +||++||.... . ...+++++|
T Consensus 37 ~~~~iyv~gG~~--~~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~~~v~~~~-~IYV~GG~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 37 DNNTVYVGLGSA--GTSWYKLDLNAPSKGWTKIAAFPGG--PREQAVAAFIDG-KLYVFGGIGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred ECCEEEEEeCCC--CCeEEEEECCCCCCCeEECCcCCCC--CcccceEEEECC-EEEEEcCCCCCCCCCceeEcccEEEE
Confidence 389999998753 3458889886 4789999988753 377888888888 89999998641 1 235789999
Q ss_pred ECCCCceeeCCC-CCcCCcceeeEE-ECCEEEEEccccCCC--------------------------------CCCCCeE
Q 014222 190 SARTNKWHRAPD-MLRRRHFFGSCV-INNCLYVAGGENGGV--------------------------------HRSLRSA 235 (428)
Q Consensus 190 d~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~--------------------------------~~~~~~v 235 (428)
|+.+++|+.+++ +|.++.++++++ .+++||++||..... ....+.+
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 999999999986 466777777666 899999999974210 0124689
Q ss_pred EEEeCCCCceEEcCCCCC-CccceEEEEECCEEEEEecCCCC---cee--EEEEeCCCCCeEecCCCCcCCC-------C
Q 014222 236 EVYDPNKNRWSFISDMST-AMVPFIGVVYEGKWFLKGLGSHR---QVL--SEAYQPETDSWFPVYDGMVAGW-------R 302 (428)
Q Consensus 236 ~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~g~lyv~Gg~~~~---~~~--i~~yd~~~~~W~~~~~~~~~~~-------~ 302 (428)
++||+.+++|+.++++|. ++..++++.++++|||+||.... ... .+.||+++++|+.+++++.++. .
T Consensus 192 ~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 271 (376)
T PRK14131 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVA 271 (376)
T ss_pred EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccc
Confidence 999999999999999986 67788888999999999985321 122 3456889999999987554331 1
Q ss_pred -CceEEECCeEEEEEccCC---------------------cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCe
Q 014222 303 -NPSASLNRHLYALDCKDG---------------------CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGK 360 (428)
Q Consensus 303 -~~~~~~~~~lyv~gG~~~---------------------~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~ 360 (428)
..+++++++||++||.+. ..+++||+++++|+.++.||.++ ..++++.++++
T Consensus 272 ~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r------~~~~av~~~~~ 345 (376)
T PRK14131 272 GAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL------AYGVSVSWNNG 345 (376)
T ss_pred eEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc------cceEEEEeCCE
Confidence 114678999999999641 13678999999999998776543 34678899999
Q ss_pred EEEEeCCC----eEEEEEeecCCC
Q 014222 361 LCIIRNNM----SISLVDVSKSNG 380 (428)
Q Consensus 361 lyv~GG~~----~~~~v~~yd~~~ 380 (428)
|||+||.. ..++|+.|+++.
T Consensus 346 iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 346 VLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EEEEcCCCCCCcEeeeEEEEEEcC
Confidence 99999953 357899999888
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=282.90 Aligned_cols=202 Identities=23% Similarity=0.334 Sum_probs=177.7
Q ss_pred ccceEEEEeeCCC--CceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCC
Q 014222 117 AEEWIYVIKRDRE--GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTN 194 (428)
Q Consensus 117 ~~~~l~v~gg~~~--~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 194 (428)
.++.||++||... ....+++|||.+++|..+++|+.+ |..+++++++| +||++||.+. .+++++|||.++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~-~iYviGG~~~----~~sve~ydp~~n 341 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLYASGVPANN-KLYVVGGLPN----PTSVERWFHGDA 341 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhcceEEEECC-EEEEECCcCC----CCceEEEECCCC
Confidence 4789999998543 235799999999999999999876 77888888888 9999999753 256899999999
Q ss_pred ceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCC
Q 014222 195 KWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGS 274 (428)
Q Consensus 195 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~ 274 (428)
+|..+++|+.+|..+++++++|+||++||.+. ...++++|||.+++|+.+++|+.+|..+++++++|+||++||.
T Consensus 342 ~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~----~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~- 416 (480)
T PHA02790 342 AWVNMPSLLKPRCNPAVASINNVIYVIGGHSE----TDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN- 416 (480)
T ss_pred eEEECCCCCCCCcccEEEEECCEEEEecCcCC----CCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-
Confidence 99999999999999999999999999999752 1367999999999999999999999999999999999999973
Q ss_pred CCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC----cEEEEEeCCCCceeeC
Q 014222 275 HRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRVYDEVTDSWSKH 336 (428)
Q Consensus 275 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~----~~i~~yd~~~~~W~~v 336 (428)
+++||+++++|+.+++++.++..+++++++|+||++||.++ +.+++||+++++|+..
T Consensus 417 -----~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 -----AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -----eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 58999999999999987666667778899999999999753 4699999999999865
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7.5e-34 Score=286.86 Aligned_cols=244 Identities=20% Similarity=0.294 Sum_probs=199.8
Q ss_pred hhhchHhHHhhhcCChhHHHHH-hhCcccceEEEEeeCCCC---ceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEe
Q 014222 91 LRLVCKRWHRLLSGNFYYSLRK-SLGIAEEWIYVIKRDREG---KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLS 166 (428)
Q Consensus 91 ~~~v~k~W~~l~~~~~f~~~r~-~~~~~~~~l~v~gg~~~~---~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~ 166 (428)
+....++|..+...+. ... .....++.||++||.... ..++++||+.+++|..+++++.+ |..+++++.+
T Consensus 269 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~~ 342 (534)
T PHA03098 269 NYSPLSEINTIIDIHY---VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVFN 342 (534)
T ss_pred cchhhhhcccccCccc---cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEEC
Confidence 3444567777755441 111 112238899999985432 24799999999999999999875 8889999998
Q ss_pred CCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceE
Q 014222 167 GCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWS 246 (428)
Q Consensus 167 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~ 246 (428)
+ +||++||.+.. ...+++++||+.+++|+.+++||.+|..+++++++++||++||.... ....+++++||+.+++|+
T Consensus 343 ~-~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 343 N-RIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKN-DELLKTVECFSLNTNKWS 419 (534)
T ss_pred C-EEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCC-CcccceEEEEeCCCCeee
Confidence 8 89999998743 35788999999999999999999999999999999999999997532 334688999999999999
Q ss_pred EcCCCCCCccceEEEEECCEEEEEecCCCC-----ceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC-
Q 014222 247 FISDMSTAMVPFIGVVYEGKWFLKGLGSHR-----QVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG- 320 (428)
Q Consensus 247 ~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~-----~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~- 320 (428)
.++++|.+|..+++++++++||++||.... ...+++||+.+++|+.+++++.++..+++++++++||++||.++
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 499 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYE 499 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCC
Confidence 999999999999999999999999985422 23489999999999999876666666667889999999999763
Q ss_pred ---cEEEEEeCCCCceeeCccccccc
Q 014222 321 ---CKIRVYDEVTDSWSKHIDSKMHL 343 (428)
Q Consensus 321 ---~~i~~yd~~~~~W~~v~~~~~~~ 343 (428)
+.+++||+++++|+.++.+|...
T Consensus 500 ~~~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 500 YYINEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred cccceeEEEeCCCCEEEecCCCcccc
Confidence 57999999999999998866543
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.3e-33 Score=267.98 Aligned_cols=239 Identities=17% Similarity=0.205 Sum_probs=183.6
Q ss_pred CCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEEC--CCCceeeCCCCC-cCCcceeeEEECCEEEEEcc
Q 014222 147 LPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSA--RTNKWHRAPDML-RRRHFFGSCVINNCLYVAGG 223 (428)
Q Consensus 147 l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG 223 (428)
+|+||.+ +..++++++++ +|||+||.. .+++++||+ .+++|.++++|| .+|..+++++++++|||+||
T Consensus 1 ~~~lp~~---~~~~~~~~~~~-~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG 71 (346)
T TIGR03547 1 LPDLPVG---FKNGTGAIIGD-KVYVGLGSA-----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGG 71 (346)
T ss_pred CCCCCcc---ccCceEEEECC-EEEEEcccc-----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeC
Confidence 4566664 55566777777 999999974 257899996 678999999998 58999999999999999999
Q ss_pred ccCCC----CCCCCeEEEEeCCCCceEEcC-CCCCCccceEEE-EECCEEEEEecCCCC---------------------
Q 014222 224 ENGGV----HRSLRSAEVYDPNKNRWSFIS-DMSTAMVPFIGV-VYEGKWFLKGLGSHR--------------------- 276 (428)
Q Consensus 224 ~~~~~----~~~~~~v~~yd~~t~~W~~~~-~~p~~~~~~~~~-~~~g~lyv~Gg~~~~--------------------- 276 (428)
..... ...++++++||+.+++|+.++ ++|..+..++++ +++++||++||....
T Consensus 72 ~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 72 IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 85321 124678999999999999997 456677777666 789999999996421
Q ss_pred ---------------ceeEEEEeCCCCCeEecCCCCcC-CCCCceEEECCeEEEEEccCC-----cEEEEEe--CCCCce
Q 014222 277 ---------------QVLSEAYQPETDSWFPVYDGMVA-GWRNPSASLNRHLYALDCKDG-----CKIRVYD--EVTDSW 333 (428)
Q Consensus 277 ---------------~~~i~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~lyv~gG~~~-----~~i~~yd--~~~~~W 333 (428)
...+++||+.+++|+.+++++.. +..+++++++++||++||... ..++.|| +++++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 14689999999999999886643 444556789999999999642 2355555 577899
Q ss_pred eeCcccccccCC-cccccceEEEEeCCeEEEEeCCCe--------------------EEEEEeecCCCCCCCccccccce
Q 014222 334 SKHIDSKMHLGN-SRALEAAALVPLNGKLCIIRNNMS--------------------ISLVDVSKSNGERGASAEHLWET 392 (428)
Q Consensus 334 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~lyv~GG~~~--------------------~~~v~~yd~~~~~~~~~~~~W~~ 392 (428)
+.++.|+.+... .+.+.++.++.++++|||+||... ...+++||+++ ++|+.
T Consensus 232 ~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~-------~~W~~ 304 (346)
T TIGR03547 232 NKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN-------GKWSK 304 (346)
T ss_pred eecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC-------Ccccc
Confidence 999988654321 111234567789999999999631 24689999999 99999
Q ss_pred eccCCcccc
Q 014222 393 ISGKGQFKT 401 (428)
Q Consensus 393 ~~~~~~~~~ 401 (428)
+++||..+.
T Consensus 305 ~~~lp~~~~ 313 (346)
T TIGR03547 305 VGKLPQGLA 313 (346)
T ss_pred cCCCCCCce
Confidence 999997644
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.6e-32 Score=259.39 Aligned_cols=231 Identities=15% Similarity=0.186 Sum_probs=182.0
Q ss_pred ccccEEEEEeCCEEEEEeeeCCCC---------CCCceEEEEE-CCC-CceeeCCCCCcCCcceeeEEECCEEEEEcccc
Q 014222 157 ALGFGCAVLSGCHLYLFGGKDPLK---------GSMRRVIFYS-ART-NKWHRAPDMLRRRHFFGSCVINNCLYVAGGEN 225 (428)
Q Consensus 157 r~~~~~~~~~~~~lyv~GG~~~~~---------~~~~~v~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 225 (428)
..++.++++++ .||++||.+... ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||.+
T Consensus 4 ~~g~~~~~~~~-~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 4 VAGCYAGIIGD-YILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred eeeEeeeEECC-EEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 45677888888 899999986542 1345788886 332 37999999999999888899999999999986
Q ss_pred CCCCCCCCeEEEEeCCCCce----EEcCCCCCCccceEEEEECCEEEEEecCCC--CceeEEEEeCCCCCeEecCCCCc-
Q 014222 226 GGVHRSLRSAEVYDPNKNRW----SFISDMSTAMVPFIGVVYEGKWFLKGLGSH--RQVLSEAYQPETDSWFPVYDGMV- 298 (428)
Q Consensus 226 ~~~~~~~~~v~~yd~~t~~W----~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~--~~~~i~~yd~~~~~W~~~~~~~~- 298 (428)
. ...++++++||+.+++| +.++++|.++..+++++++++||++||... ....+++||+.+++|+++++++.
T Consensus 83 ~--~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 160 (323)
T TIGR03548 83 S--SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE 160 (323)
T ss_pred C--CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC
Confidence 3 34568999999999998 788999999999999999999999998532 23458999999999999987554
Q ss_pred CCCCCceEEECCeEEEEEccCC---cEEEEEeCCCCceeeCccccc-ccCCcccccceEEEEeCCeEEEEeCCCe-----
Q 014222 299 AGWRNPSASLNRHLYALDCKDG---CKIRVYDEVTDSWSKHIDSKM-HLGNSRALEAAALVPLNGKLCIIRNNMS----- 369 (428)
Q Consensus 299 ~~~~~~~~~~~~~lyv~gG~~~---~~i~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~----- 369 (428)
.+..+.+++++++||++||.++ .++++||+++++|+.++.++. ..++.+. ..++++..+++|||+||...
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~ 239 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLL-GAASIKINESLLLCIGGFNKDVYND 239 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecc-ceeEEEECCCEEEEECCcCHHHHHH
Confidence 3334445689999999999764 358999999999999987642 1222211 23445566899999999753
Q ss_pred ------------------------------EEEEEeecCCCCCCCccccccceeccCCc
Q 014222 370 ------------------------------ISLVDVSKSNGERGASAEHLWETISGKGQ 398 (428)
Q Consensus 370 ------------------------------~~~v~~yd~~~~~~~~~~~~W~~~~~~~~ 398 (428)
.+.+++||+.+ ++|+.++.+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~-------~~W~~~~~~p~ 291 (323)
T TIGR03548 240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT-------GKWKSIGNSPF 291 (323)
T ss_pred HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC-------CeeeEcccccc
Confidence 25799999999 99999998874
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=9.4e-32 Score=258.84 Aligned_cols=255 Identities=16% Similarity=0.167 Sum_probs=190.4
Q ss_pred ceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECC--CCceeeCCCCC-cCCcceeeEEECCEEE
Q 014222 143 LWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR--TNKWHRAPDML-RRRHFFGSCVINNCLY 219 (428)
Q Consensus 143 ~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iy 219 (428)
.++.+++||.+ +..++.+++++ +|||+||... +.+++||+. +++|..++++| .+|..+++++++++||
T Consensus 18 ~~~~l~~lP~~---~~~~~~~~~~~-~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY 88 (376)
T PRK14131 18 NAEQLPDLPVP---FKNGTGAIDNN-TVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY 88 (376)
T ss_pred ecccCCCCCcC---ccCCeEEEECC-EEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE
Confidence 35678888875 55567777777 8999999642 358999986 47899999997 5899999999999999
Q ss_pred EEccccCCC----CCCCCeEEEEeCCCCceEEcCC-CCCCccceEEEE-ECCEEEEEecCCCC-----------------
Q 014222 220 VAGGENGGV----HRSLRSAEVYDPNKNRWSFISD-MSTAMVPFIGVV-YEGKWFLKGLGSHR----------------- 276 (428)
Q Consensus 220 v~GG~~~~~----~~~~~~v~~yd~~t~~W~~~~~-~p~~~~~~~~~~-~~g~lyv~Gg~~~~----------------- 276 (428)
|+||..... ...++++++||+.+++|+.+++ .|.++..+++++ .+++||++||....
T Consensus 89 V~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 89 VFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred EEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 999986311 1235789999999999999985 466676777666 89999999995421
Q ss_pred -------------------ceeEEEEeCCCCCeEecCCCCcC-CCCCceEEECCeEEEEEccCC-----cEE--EEEeCC
Q 014222 277 -------------------QVLSEAYQPETDSWFPVYDGMVA-GWRNPSASLNRHLYALDCKDG-----CKI--RVYDEV 329 (428)
Q Consensus 277 -------------------~~~i~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~lyv~gG~~~-----~~i--~~yd~~ 329 (428)
...+++||+.+++|+.+++++.. ...+++++++++||++||... ..+ +.||++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 23589999999999999876643 334456778999999999532 233 456789
Q ss_pred CCceeeCcccccccCC--cccccceEEEEeCCeEEEEeCCCe--------------------EEEEEeecCCCCCCCccc
Q 014222 330 TDSWSKHIDSKMHLGN--SRALEAAALVPLNGKLCIIRNNMS--------------------ISLVDVSKSNGERGASAE 387 (428)
Q Consensus 330 ~~~W~~v~~~~~~~~~--~~~~~~~~~~~~~~~lyv~GG~~~--------------------~~~v~~yd~~~~~~~~~~ 387 (428)
+++|+.+..||.+... .+...++.++..+++|||+||... ...+++||+++
T Consensus 249 ~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~------- 321 (376)
T PRK14131 249 NLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN------- 321 (376)
T ss_pred CcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC-------
Confidence 9999999988654321 111123446778999999999531 13578999999
Q ss_pred cccceeccCCccccchh-----hhhhhhhcc
Q 014222 388 HLWETISGKGQFKTLVT-----NLWSSIAGR 413 (428)
Q Consensus 388 ~~W~~~~~~~~~~~f~~-----~~~~~~~~~ 413 (428)
++|+.++.||..+.... +.+..++|.
T Consensus 322 ~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 322 GKWQKVGELPQGLAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred CcccccCcCCCCccceEEEEeCCEEEEEcCC
Confidence 99999999998755442 245556554
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.3e-32 Score=230.03 Aligned_cols=248 Identities=19% Similarity=0.272 Sum_probs=200.3
Q ss_pred cceEEEEeeCC-------CCceeEEEEeCCCCceEeCCC------CCC----CCccccccEEEEEeCCEEEEEeeeCCCC
Q 014222 118 EEWIYVIKRDR-------EGKISWHAFDPIYQLWQPLPP------IPK----EYSEALGFGCAVLSGCHLYLFGGKDPLK 180 (428)
Q Consensus 118 ~~~l~v~gg~~-------~~~~~~~~yd~~~~~W~~l~~------~~~----~~~~r~~~~~~~~~~~~lyv~GG~~~~~ 180 (428)
+..+|-|||.= ....++.++|..+-+|.++|+ ++. -+..|.+|+++...+ ++|+.||.+...
T Consensus 23 G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-~~yvWGGRND~e 101 (392)
T KOG4693|consen 23 GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-KAYVWGGRNDDE 101 (392)
T ss_pred cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-eEEEEcCccCcc
Confidence 78999999731 223489999999999999987 111 223588999999998 899999999877
Q ss_pred CCCceEEEEECCCCceeeC---CCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcC---CCCCC
Q 014222 181 GSMRRVIFYSARTNKWHRA---PDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFIS---DMSTA 254 (428)
Q Consensus 181 ~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~ 254 (428)
+.-+.++.|||.|++|.+. .-.|.+|.+|++++.++.+|++||+.+..+....+++++|..|-+|+.+. ..|.-
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 7889999999999999875 35688999999999999999999997665677889999999999999885 45556
Q ss_pred ccceEEEEECCEEEEEecCCCC-----------ceeEEEEeCCCCCeEecCC---CCcCCCCCceEEECCeEEEEEccCC
Q 014222 255 MVPFIGVVYEGKWFLKGLGSHR-----------QVLSEAYQPETDSWFPVYD---GMVAGWRNPSASLNRHLYALDCKDG 320 (428)
Q Consensus 255 ~~~~~~~~~~g~lyv~Gg~~~~-----------~~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~lyv~gG~~~ 320 (428)
|..|+++++++.+|||||.... ...+..+|..++.|...+. .|..++.+++.+.|++||++||+++
T Consensus 182 RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng 261 (392)
T KOG4693|consen 182 RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNG 261 (392)
T ss_pred hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccch
Confidence 7789999999999999985321 1247889999999998754 2344566778899999999999987
Q ss_pred ------cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 321 ------CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 321 ------~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
+++|.|||++..|+.|..-.. .+..| .-.++++.++|+|+|||...
T Consensus 262 ~ln~HfndLy~FdP~t~~W~~I~~~Gk-~P~aR--RRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 262 TLNVHFNDLYCFDPKTSMWSVISVRGK-YPSAR--RRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred hhhhhhcceeecccccchheeeeccCC-CCCcc--cceeEEEECCEEEEecCCCC
Confidence 689999999999999864321 12222 23778889999999999644
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.96 E-value=9.8e-29 Score=210.97 Aligned_cols=231 Identities=16% Similarity=0.231 Sum_probs=184.5
Q ss_pred cccccEEEEEeCCEEEEEeeeCCCCC----CCceEEEEECCCCceeeCCC-------------CCcCCcceeeEEECCEE
Q 014222 156 EALGFGCAVLSGCHLYLFGGKDPLKG----SMRRVIFYSARTNKWHRAPD-------------MLRRRHFFGSCVINNCL 218 (428)
Q Consensus 156 ~r~~~~~~~~~~~~lyv~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~i 218 (428)
.|..|+++..+. .||-|||+..... .--++.++|..+-+|.++++ .|..|++|+++.+++++
T Consensus 13 rRVNHAavaVG~-riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 13 RRVNHAAVAVGS-RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred ccccceeeeecc-eEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 477888877777 8999999754322 23589999999999999876 25579999999999999
Q ss_pred EEEccccCCCCCCCCeEEEEeCCCCceEEcC---CCCCCccceEEEEECCEEEEEecCCCC----ceeEEEEeCCCCCeE
Q 014222 219 YVAGGENGGVHRSLRSAEVYDPNKNRWSFIS---DMSTAMVPFIGVVYEGKWFLKGLGSHR----QVLSEAYQPETDSWF 291 (428)
Q Consensus 219 yv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~g~lyv~Gg~~~~----~~~i~~yd~~~~~W~ 291 (428)
|+.||.++. ++..+.+++|||++++|.+.. -+|.+|.+|++++.++.+|||||..+. ...++++|..+.+|+
T Consensus 92 yvWGGRND~-egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 92 YVWGGRNDD-EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EEEcCccCc-ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeee
Confidence 999999854 566789999999999998754 578899999999999999999995322 223789999999999
Q ss_pred ecCC---CCcCCCCCceEEECCeEEEEEccCC-------------cEEEEEeCCCCceeeCcccccccCCcccccceEEE
Q 014222 292 PVYD---GMVAGWRNPSASLNRHLYALDCKDG-------------CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALV 355 (428)
Q Consensus 292 ~~~~---~~~~~~~~~~~~~~~~lyv~gG~~~-------------~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~ 355 (428)
.+.. ++.-+-.+++.++++++|++||... +.|..+|.+++.|...+..+... . .+.++++.
T Consensus 171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P-~--GRRSHS~f 247 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP-G--GRRSHSTF 247 (392)
T ss_pred ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC-C--cccccceE
Confidence 8843 2333445667789999999999643 36899999999999886543221 1 12469999
Q ss_pred EeCCeEEEEeCCCe-----EEEEEeecCCCCCCCccccccceeccCCc
Q 014222 356 PLNGKLCIIRNNMS-----ISLVDVSKSNGERGASAEHLWETISGKGQ 398 (428)
Q Consensus 356 ~~~~~lyv~GG~~~-----~~~v~~yd~~~~~~~~~~~~W~~~~~~~~ 398 (428)
.++++||+|||... .+++++|||.+ ..|+.|..-.+
T Consensus 248 vYng~~Y~FGGYng~ln~HfndLy~FdP~t-------~~W~~I~~~Gk 288 (392)
T KOG4693|consen 248 VYNGKMYMFGGYNGTLNVHFNDLYCFDPKT-------SMWSVISVRGK 288 (392)
T ss_pred EEcceEEEecccchhhhhhhcceeeccccc-------chheeeeccCC
Confidence 99999999999765 46899999999 99999875443
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=205.28 Aligned_cols=232 Identities=17% Similarity=0.249 Sum_probs=188.8
Q ss_pred CccccccEEEEEeCCEEEEEeeeCCCCCCCc-eEEEEECCCCceeeCC---CCCcCCcceeeEEECCEEEEEccccCCCC
Q 014222 154 YSEALGFGCAVLSGCHLYLFGGKDPLKGSMR-RVIFYSARTNKWHRAP---DMLRRRHFFGSCVINNCLYVAGGENGGVH 229 (428)
Q Consensus 154 ~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 229 (428)
+..|..|+++..++ ++||+||......... +++++|..+..|.... ..|.+|.+|.++.++++||++||.+. ..
T Consensus 58 p~~R~~hs~~~~~~-~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-~~ 135 (482)
T KOG0379|consen 58 PIPRAGHSAVLIGN-KLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-KY 135 (482)
T ss_pred cchhhccceeEECC-EEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC-CC
Confidence 33588999988877 9999999865543222 6999999999998863 45789999999999999999999974 24
Q ss_pred CCCCeEEEEeCCCCceEEcC---CCCCCccceEEEEECCEEEEEecCCCC---ceeEEEEeCCCCCeEecCC---CCcCC
Q 014222 230 RSLRSAEVYDPNKNRWSFIS---DMSTAMVPFIGVVYEGKWFLKGLGSHR---QVLSEAYQPETDSWFPVYD---GMVAG 300 (428)
Q Consensus 230 ~~~~~v~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~g~lyv~Gg~~~~---~~~i~~yd~~~~~W~~~~~---~~~~~ 300 (428)
...++++.||+.|.+|+.+. .+|.+|.+|++++++++|||+||.... .+.+++||+++.+|.++.. .|.++
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR 215 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR 215 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC
Confidence 45789999999999999875 568899999999999999999985433 4559999999999998843 35556
Q ss_pred CCCceEEECCeEEEEEccC-C----cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe-----E
Q 014222 301 WRNPSASLNRHLYALDCKD-G----CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS-----I 370 (428)
Q Consensus 301 ~~~~~~~~~~~lyv~gG~~-~----~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-----~ 370 (428)
..+++++.+++++++||.+ + ++++.+|+.+.+|.++.... ..+..| .+|.++..+++++++||... .
T Consensus 216 ~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g-~~p~~R--~~h~~~~~~~~~~l~gG~~~~~~~~l 292 (482)
T KOG0379|consen 216 YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG-DLPSPR--SGHSLTVSGDHLLLFGGGTDPKQEPL 292 (482)
T ss_pred CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccC-CCCCCc--ceeeeEEECCEEEEEcCCcccccccc
Confidence 6677889999999999877 3 57999999999999765432 334444 45888899999999999644 5
Q ss_pred EEEEeecCCCCCCCccccccceeccCC
Q 014222 371 SLVDVSKSNGERGASAEHLWETISGKG 397 (428)
Q Consensus 371 ~~v~~yd~~~~~~~~~~~~W~~~~~~~ 397 (428)
.+++.||..+ ..|..+..+.
T Consensus 293 ~~~~~l~~~~-------~~w~~~~~~~ 312 (482)
T KOG0379|consen 293 GDLYGLDLET-------LVWSKVESVG 312 (482)
T ss_pred cccccccccc-------cceeeeeccc
Confidence 6788999999 9999987766
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=204.28 Aligned_cols=232 Identities=21% Similarity=0.201 Sum_probs=188.6
Q ss_pred hHHHHHhhCcc--cceEEEEeeCCCC--ce--eEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCC
Q 014222 107 YYSLRKSLGIA--EEWIYVIKRDREG--KI--SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLK 180 (428)
Q Consensus 107 f~~~r~~~~~~--~~~l~v~gg~~~~--~~--~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~ 180 (428)
....|..+... .+.+||+||.... .. ++++||..+..|.........++++.+|.+++.++ +||++||.+...
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFGGTDKKY 135 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECC-eEEEEccccCCC
Confidence 33455555443 8999999986432 22 59999999999998876555556799999999988 999999998644
Q ss_pred CCCceEEEEECCCCceeeCC---CCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcC---CCCCC
Q 014222 181 GSMRRVIFYSARTNKWHRAP---DMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFIS---DMSTA 254 (428)
Q Consensus 181 ~~~~~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~ 254 (428)
...++++.||+.|++|..+. ..|.+|.+|+++++++++||+||.+.. ....+++++||+.+.+|.++. +.|.+
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc-ccceeeeeeeccccccceecccCCCCCCC
Confidence 46789999999999999874 458899999999999999999998743 337899999999999999885 56779
Q ss_pred ccceEEEEECCEEEEEecCC-CCc--eeEEEEeCCCCCeEecCC---CCcCCCCCceEEECCeEEEEEccCC------cE
Q 014222 255 MVPFIGVVYEGKWFLKGLGS-HRQ--VLSEAYQPETDSWFPVYD---GMVAGWRNPSASLNRHLYALDCKDG------CK 322 (428)
Q Consensus 255 ~~~~~~~~~~g~lyv~Gg~~-~~~--~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~lyv~gG~~~------~~ 322 (428)
|.+|++++++++++++||.. ... ..++++|+.+.+|..+.. .+.++..+..++.+.+++++||... .+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~ 294 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD 294 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence 99999999999999998765 322 238999999999996643 3555666677789999999998654 35
Q ss_pred EEEEeCCCCceeeCcccc
Q 014222 323 IRVYDEVTDSWSKHIDSK 340 (428)
Q Consensus 323 i~~yd~~~~~W~~v~~~~ 340 (428)
+|.||.+++.|.++....
T Consensus 295 ~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 295 LYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccceeeeeccc
Confidence 899999999999998765
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.9e-23 Score=193.19 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=186.2
Q ss_pred cceEEEEeeCCCCc-eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCce
Q 014222 118 EEWIYVIKRDREGK-ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKW 196 (428)
Q Consensus 118 ~~~l~v~gg~~~~~-~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 196 (428)
.+.|.+|||.+++- ..+++||.++++|..-+--...++....|+.+..+. +||+|||......++++++.+....-.|
T Consensus 42 kELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt-rilvFGGMvEYGkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 42 KELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT-RILVFGGMVEYGKYSNDLYELQASRWEW 120 (830)
T ss_pred eeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCc-eEEEEccEeeeccccchHHHhhhhhhhH
Confidence 78899999877665 579999999999976543222112244566555555 9999999887777888888877777788
Q ss_pred eeCC-------CCCcCCcceeeEEECCEEEEEccccCCCC-------CCCCeEEEEeCCCC----ceEEc---CCCCCCc
Q 014222 197 HRAP-------DMLRRRHFFGSCVINNCLYVAGGENGGVH-------RSLRSAEVYDPNKN----RWSFI---SDMSTAM 255 (428)
Q Consensus 197 ~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~v~~yd~~t~----~W~~~---~~~p~~~ 255 (428)
+++. +.|.||.+|+..++++|.|++||...+.+ .+++++++.++.-. .|... ..+|.+|
T Consensus 121 krlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 8873 35789999999999999999999864332 34667777776643 57654 3678899
Q ss_pred cceEEEEE------CCEEEEEecCCC-CceeEEEEeCCCCCeEecCC---CCcCCCCCceEEECCeEEEEEccCC-----
Q 014222 256 VPFIGVVY------EGKWFLKGLGSH-RQVLSEAYQPETDSWFPVYD---GMVAGWRNPSASLNRHLYALDCKDG----- 320 (428)
Q Consensus 256 ~~~~~~~~------~g~lyv~Gg~~~-~~~~i~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~lyv~gG~~~----- 320 (428)
..|+++.+ ..++||+||-.. +...++..|+++-.|++..- .|.++.-+++.++++++|++||.--
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~ 280 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDD 280 (830)
T ss_pred ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccc
Confidence 99999988 457999998543 33458999999999998642 2334445667899999999998521
Q ss_pred -------------cEEEEEeCCCCceeeCccccc-ccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 321 -------------CKIRVYDEVTDSWSKHIDSKM-HLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 321 -------------~~i~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
+.+-.+|.++..|+.+-.-.. ....+|.+.+|++++++.+|||..|.++
T Consensus 281 ~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 281 VKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred cccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 357788999999998742211 1124445578999999999999999765
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=177.43 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=167.7
Q ss_pred cceEEEEeeCCC-C-----ceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCC-----CCCceE
Q 014222 118 EEWIYVIKRDRE-G-----KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLK-----GSMRRV 186 (428)
Q Consensus 118 ~~~l~v~gg~~~-~-----~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v 186 (428)
.+-|+++||.-. + .++++.||..+++|+++.. |.++++|..|.+++...+.+|++||..... ....++
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~ 156 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDL 156 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhe
Confidence 457899998431 2 2589999999999999865 333445888888877633899999964321 145799
Q ss_pred EEEECCCCceeeCC--CCCcCCcceeeEEECCEEEEEccccCCC--CCCCCeEEEEeCCCCceEEcCC---CCCCccceE
Q 014222 187 IFYSARTNKWHRAP--DMLRRRHFFGSCVINNCLYVAGGENGGV--HRSLRSAEVYDPNKNRWSFISD---MSTAMVPFI 259 (428)
Q Consensus 187 ~~yd~~t~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~v~~yd~~t~~W~~~~~---~p~~~~~~~ 259 (428)
|+||..|++|.++. .-|.+|++|-+++...+|+++||..+.. ....++|++||+.|-+|+++.+ -|.+|+++.
T Consensus 157 W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq 236 (521)
T KOG1230|consen 157 WLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQ 236 (521)
T ss_pred eeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcce
Confidence 99999999999974 4589999999999999999999987543 2357899999999999999864 377999998
Q ss_pred EEEE-CCEEEEEecCCCC-----------ceeEEEEeCCC-----CCeEecCC---CCcCCCCCceEE-ECCeEEEEEcc
Q 014222 260 GVVY-EGKWFLKGLGSHR-----------QVLSEAYQPET-----DSWFPVYD---GMVAGWRNPSAS-LNRHLYALDCK 318 (428)
Q Consensus 260 ~~~~-~g~lyv~Gg~~~~-----------~~~i~~yd~~~-----~~W~~~~~---~~~~~~~~~~~~-~~~~lyv~gG~ 318 (428)
..+. +|.|||.||.... ...++..++++ -+|+.+.+ .|.++...++++ -+++-+.+||.
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV 316 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGV 316 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecce
Confidence 8887 9999999995311 12367888877 46888865 244444445544 47799999986
Q ss_pred CC-------------cEEEEEeCCCCceeeC
Q 014222 319 DG-------------CKIRVYDEVTDSWSKH 336 (428)
Q Consensus 319 ~~-------------~~i~~yd~~~~~W~~v 336 (428)
.. ++++.||...+.|...
T Consensus 317 ~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 317 CDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ecccccchhhhhhhhhhhhheecccchhhHh
Confidence 33 5799999999999965
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.88 E-value=2e-21 Score=175.86 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=169.6
Q ss_pred cccccEEEEE--eCCEEEEEeeeC--CCC-CCCceEEEEECCCCceeeC--CCCCcCCcceeeEEEC-CEEEEEccccCC
Q 014222 156 EALGFGCAVL--SGCHLYLFGGKD--PLK-GSMRRVIFYSARTNKWHRA--PDMLRRRHFFGSCVIN-NCLYVAGGENGG 227 (428)
Q Consensus 156 ~r~~~~~~~~--~~~~lyv~GG~~--~~~-~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~iyv~GG~~~~ 227 (428)
+|.++++.+. .+ .|++|||.. +.. ...++++.||..+++|+.+ |+.|.||+.|.++++- |.+|++||.-..
T Consensus 66 pRsn~sl~~nPeke-ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS 144 (521)
T KOG1230|consen 66 PRSNPSLFANPEKE-ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS 144 (521)
T ss_pred CCCCcceeeccCcc-eeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC
Confidence 3777777664 34 799999953 222 1468999999999999997 5668899999888775 899999997532
Q ss_pred CC----CCCCeEEEEeCCCCceEEcC--CCCCCccceEEEEECCEEEEEecCCCCc------eeEEEEeCCCCCeEecCC
Q 014222 228 VH----RSLRSAEVYDPNKNRWSFIS--DMSTAMVPFIGVVYEGKWFLKGLGSHRQ------VLSEAYQPETDSWFPVYD 295 (428)
Q Consensus 228 ~~----~~~~~v~~yd~~t~~W~~~~--~~p~~~~~~~~~~~~g~lyv~Gg~~~~~------~~i~~yd~~~~~W~~~~~ 295 (428)
-. ....+++.||..+++|+.+. .-|.+|++|-+++...+|++|||..... +.+++||+.+-+|+++.+
T Consensus 145 Pnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 145 PNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred cchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 11 23568999999999999985 5788999999999999999999942221 238999999999999965
Q ss_pred C---CcCCCCCceEEE-CCeEEEEEccCC-------------cEEEEEeCCC-----CceeeCcccccccCCcccccceE
Q 014222 296 G---MVAGWRNPSASL-NRHLYALDCKDG-------------CKIRVYDEVT-----DSWSKHIDSKMHLGNSRALEAAA 353 (428)
Q Consensus 296 ~---~~~~~~~~~~~~-~~~lyv~gG~~~-------------~~i~~yd~~~-----~~W~~v~~~~~~~~~~~~~~~~~ 353 (428)
. |.++..+...+. .|.||++||+.. +++|.+++++ =.|.++...... +.+|. +++
T Consensus 225 sga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k-PspRs--gfs 301 (521)
T KOG1230|consen 225 SGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK-PSPRS--GFS 301 (521)
T ss_pred CCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC-CCCCC--cee
Confidence 2 333444445555 999999999753 4689999988 368888764322 34443 344
Q ss_pred E-EEeCCeEEEEeCCCe------------EEEEEeecCCCCCCCcccccccee
Q 014222 354 L-VPLNGKLCIIRNNMS------------ISLVDVSKSNGERGASAEHLWETI 393 (428)
Q Consensus 354 ~-~~~~~~lyv~GG~~~------------~~~v~~yd~~~~~~~~~~~~W~~~ 393 (428)
+ +.-+++-|.|||... .++++.||.+. ++|.+.
T Consensus 302 v~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-------nrW~~~ 347 (521)
T KOG1230|consen 302 VAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-------NRWSEG 347 (521)
T ss_pred EEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-------chhhHh
Confidence 3 445669999999422 45788999999 888764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=3.7e-19 Score=165.02 Aligned_cols=238 Identities=13% Similarity=0.139 Sum_probs=167.7
Q ss_pred CceEeCCCCCCC-CccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeC---CCCCcCCcceeeEEECCE
Q 014222 142 QLWQPLPPIPKE-YSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRA---PDMLRRRHFFGSCVINNC 217 (428)
Q Consensus 142 ~~W~~l~~~~~~-~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~ 217 (428)
-.|+.+.....| +.+|++|.++++.. .|.+|||-+.. ...++.+||..||+|..- .+.|.+-..|+.+..+.+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikE-LiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr 93 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKE-LIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR 93 (830)
T ss_pred cceEEEecccCCCCCccccchheeeee-eEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhhcceEecCce
Confidence 357776543221 12488999999988 89999987643 678999999999999863 567777888888888999
Q ss_pred EEEEccccCCCCCCCCeEEEEeCCCCceEEcC-------CCCCCccceEEEEECCEEEEEecCC-----CCc------ee
Q 014222 218 LYVAGGENGGVHRSLRSAEVYDPNKNRWSFIS-------DMSTAMVPFIGVVYEGKWFLKGLGS-----HRQ------VL 279 (428)
Q Consensus 218 iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~-------~~p~~~~~~~~~~~~g~lyv~Gg~~-----~~~------~~ 279 (428)
||++||..+ ++.+.++++..-...-.|..+. ++|-+|.+|+...++++-|+|||-. ..+ +.
T Consensus 94 ilvFGGMvE-YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 94 ILVFGGMVE-YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred EEEEccEee-eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 999999863 2444455443333344556664 3456899999999999999999821 111 12
Q ss_pred EEEEeCCCC----CeEecC---CCCcCCCCCceEEE------CCeEEEEEccCC---cEEEEEeCCCCceeeCccccccc
Q 014222 280 SEAYQPETD----SWFPVY---DGMVAGWRNPSASL------NRHLYALDCKDG---CKIRVYDEVTDSWSKHIDSKMHL 343 (428)
Q Consensus 280 i~~yd~~~~----~W~~~~---~~~~~~~~~~~~~~------~~~lyv~gG~~~---~~i~~yd~~~~~W~~v~~~~~~~ 343 (428)
+|..++.-+ .|.... ..|+++..+.++++ ..++|++||.++ .++|.+|.++-+|.+...-. -.
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G-~~ 251 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG-VA 251 (830)
T ss_pred eEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccC-CC
Confidence 455555433 487542 24555666667665 357999999887 47999999999999875321 11
Q ss_pred CCcccccceEEEEeCCeEEEEeCC-----------------CeEEEEEeecCCCCCCCcccccccee
Q 014222 344 GNSRALEAAALVPLNGKLCIIRNN-----------------MSISLVDVSKSNGERGASAEHLWETI 393 (428)
Q Consensus 344 ~~~~~~~~~~~~~~~~~lyv~GG~-----------------~~~~~v~~yd~~~~~~~~~~~~W~~~ 393 (428)
+.+|. -|++..+|+|+|||||. ...+.+.++++++ ..|+.+
T Consensus 252 PlPRS--LHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt-------~~W~tl 309 (830)
T KOG4152|consen 252 PLPRS--LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT-------MAWETL 309 (830)
T ss_pred CCCcc--cccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecc-------hheeee
Confidence 22332 38899999999999993 1144677889999 999885
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=142.84 Aligned_cols=238 Identities=18% Similarity=0.217 Sum_probs=170.2
Q ss_pred cceEEEEeeCCCCceeEEEEeCCC--CceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCC----CCceEEEEEC
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIY--QLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKG----SMRRVIFYSA 191 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~--~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~----~~~~v~~yd~ 191 (428)
++.+||.-|+ ....++..|... ..|++++..|.. .|.....+++++ +||+|||...... ..+++++|||
T Consensus 46 g~~~YVGLGs--~G~afy~ldL~~~~k~W~~~a~FpG~--~rnqa~~a~~~~-kLyvFgG~Gk~~~~~~~~~nd~Y~y~p 120 (381)
T COG3055 46 GDTVYVGLGS--AGTAFYVLDLKKPGKGWTKIADFPGG--ARNQAVAAVIGG-KLYVFGGYGKSVSSSPQVFNDAYRYDP 120 (381)
T ss_pred cceEEEEecc--CCccceehhhhcCCCCceEcccCCCc--ccccchheeeCC-eEEEeeccccCCCCCceEeeeeEEecC
Confidence 6788888763 344677777664 479999998876 577777788888 9999999754332 4589999999
Q ss_pred CCCceeeCCCC-CcCCcceeeEEECC-EEEEEccccCCC--------------------------------CCCCCeEEE
Q 014222 192 RTNKWHRAPDM-LRRRHFFGSCVINN-CLYVAGGENGGV--------------------------------HRSLRSAEV 237 (428)
Q Consensus 192 ~t~~W~~~~~~-~~~r~~~~~~~~~~-~iyv~GG~~~~~--------------------------------~~~~~~v~~ 237 (428)
.+|+|+++... |..-.++.++.+++ +||++||++... ......+..
T Consensus 121 ~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~s 200 (381)
T COG3055 121 STNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLS 200 (381)
T ss_pred CCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccc
Confidence 99999998654 55666777788887 999999985110 123567899
Q ss_pred EeCCCCceEEcCCCCC-CccceEEEEECCEEEEEecCC-CCcee--EEEEeCC--CCCeEecCCCCcCCCCCc-------
Q 014222 238 YDPNKNRWSFISDMST-AMVPFIGVVYEGKWFLKGLGS-HRQVL--SEAYQPE--TDSWFPVYDGMVAGWRNP------- 304 (428)
Q Consensus 238 yd~~t~~W~~~~~~p~-~~~~~~~~~~~g~lyv~Gg~~-~~~~~--i~~yd~~--~~~W~~~~~~~~~~~~~~------- 304 (428)
|||.+++|+.+...|. +.++.+.+.-++++.++-|+- ....+ +..++.. ..+|..+.+.+.+.....
T Consensus 201 y~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf 280 (381)
T COG3055 201 YDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAF 280 (381)
T ss_pred cccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceec
Confidence 9999999999986665 555555555577788886642 11222 4555554 558999977554432221
Q ss_pred eEEECCeEEEEEccCC-----------------------cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeE
Q 014222 305 SASLNRHLYALDCKDG-----------------------CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKL 361 (428)
Q Consensus 305 ~~~~~~~lyv~gG~~~-----------------------~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~l 361 (428)
.-..++.+.+.||.+- ++|+.+| ++.|+.+..+|... ...+.+..+++|
T Consensus 281 ~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l------~YG~s~~~nn~v 352 (381)
T COG3055 281 SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGL------AYGVSLSYNNKV 352 (381)
T ss_pred cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCc------cceEEEecCCcE
Confidence 1135778888876421 3588888 89999999988643 356778899999
Q ss_pred EEEeCCC
Q 014222 362 CIIRNNM 368 (428)
Q Consensus 362 yv~GG~~ 368 (428)
|++||..
T Consensus 353 l~IGGE~ 359 (381)
T COG3055 353 LLIGGET 359 (381)
T ss_pred EEEcccc
Confidence 9999964
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=2.7e-14 Score=128.24 Aligned_cols=238 Identities=20% Similarity=0.265 Sum_probs=165.3
Q ss_pred eCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECC--CCceeeCCCCC-cCCcceeeEEECCEEEEEc
Q 014222 146 PLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR--TNKWHRAPDML-RRRHFFGSCVINNCLYVAG 222 (428)
Q Consensus 146 ~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~G 222 (428)
.+|.+|.+ ...++..+.|..+||--|..+ ...+..|.. ...|++++..| .+|.....++++++|||+|
T Consensus 29 ~lPdlPvg----~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFg 99 (381)
T COG3055 29 QLPDLPVG----FKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFG 99 (381)
T ss_pred cCCCCCcc----ccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEee
Confidence 45666664 233454555548998877433 357777775 45799999987 5789999999999999999
Q ss_pred cccCCCC---CCCCeEEEEeCCCCceEEcCC-CCCCccceEEEEECC-EEEEEecCCC----------------------
Q 014222 223 GENGGVH---RSLRSAEVYDPNKNRWSFISD-MSTAMVPFIGVVYEG-KWFLKGLGSH---------------------- 275 (428)
Q Consensus 223 G~~~~~~---~~~~~v~~yd~~t~~W~~~~~-~p~~~~~~~~~~~~g-~lyv~Gg~~~---------------------- 275 (428)
|...... ...+++++|||.+++|+++.. .|....++.++.+++ +||++||.+.
T Consensus 100 G~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 100 GYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred ccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 9864322 335789999999999999863 456677788888888 9999998310
Q ss_pred --------------CceeEEEEeCCCCCeEecCCCCcCCCCCceEE-ECCeEEEEEcc-----CCcEEEEEeCC--CCce
Q 014222 276 --------------RQVLSEAYQPETDSWFPVYDGMVAGWRNPSAS-LNRHLYALDCK-----DGCKIRVYDEV--TDSW 333 (428)
Q Consensus 276 --------------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~lyv~gG~-----~~~~i~~yd~~--~~~W 333 (428)
....+..|||++++|+.+...|......++++ -+++|.++.|. ....+++++.. .-+|
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 00126789999999999985455555445554 46668888663 22456777655 4489
Q ss_pred eeCcccccccCCcccc-cceEEEEeCCeEEEEeCCCe----------------------EEEEEeecCCCCCCCcccccc
Q 014222 334 SKHIDSKMHLGNSRAL-EAAALVPLNGKLCIIRNNMS----------------------ISLVDVSKSNGERGASAEHLW 390 (428)
Q Consensus 334 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~----------------------~~~v~~yd~~~~~~~~~~~~W 390 (428)
..++.+|.+.+....+ .++-.-..++.+.+.||... ...|+.+| . +.|
T Consensus 260 ~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~-------g~W 330 (381)
T COG3055 260 LKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--N-------GSW 330 (381)
T ss_pred eeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--C-------Cce
Confidence 9999988776554211 12223356788888888311 33566666 7 999
Q ss_pred ceeccCCcccc
Q 014222 391 ETISGKGQFKT 401 (428)
Q Consensus 391 ~~~~~~~~~~~ 401 (428)
+.++.||....
T Consensus 331 k~~GeLp~~l~ 341 (381)
T COG3055 331 KIVGELPQGLA 341 (381)
T ss_pred eeecccCCCcc
Confidence 99999998633
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.28 E-value=3.3e-12 Score=119.14 Aligned_cols=251 Identities=15% Similarity=0.151 Sum_probs=160.5
Q ss_pred CCCCceEeCCCCC-------CCCccccccEEEEEeCC-EEEEEeeeCCCCCCCceEEEEECCCCceeeCC---CCCcCCc
Q 014222 139 PIYQLWQPLPPIP-------KEYSEALGFGCAVLSGC-HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAP---DMLRRRH 207 (428)
Q Consensus 139 ~~~~~W~~l~~~~-------~~~~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~~~~r~ 207 (428)
+-+.+|.++++-. ..+..|.+|.++...+. =||+.||+++.. ...++|.|+...+.|..+. ..|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 4456788776533 34556889999887652 399999999875 6889999999999999873 4688899
Q ss_pred ceeeEEECC--EEEEEccccCCC----CCCCCeEEEEeCCCCceEEcC------CCCCCccceEEEEECCE--EEEEecC
Q 014222 208 FFGSCVINN--CLYVAGGENGGV----HRSLRSAEVYDPNKNRWSFIS------DMSTAMVPFIGVVYEGK--WFLKGLG 273 (428)
Q Consensus 208 ~~~~~~~~~--~iyv~GG~~~~~----~~~~~~v~~yd~~t~~W~~~~------~~p~~~~~~~~~~~~g~--lyv~Gg~ 273 (428)
.|-++..-. |+|++|-+-... .....++++||..++.|..+. .-|...+.|.+++.+.+ |||+||.
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 998887654 999999875322 123468999999999999875 23556777889988777 9999995
Q ss_pred CCCc----e-eEEEEeCCCCCeEecCCCCcC----------CCCCc--eEEECCeEEEEEccCCcE----EEEEeCCCCc
Q 014222 274 SHRQ----V-LSEAYQPETDSWFPVYDGMVA----------GWRNP--SASLNRHLYALDCKDGCK----IRVYDEVTDS 332 (428)
Q Consensus 274 ~~~~----~-~i~~yd~~~~~W~~~~~~~~~----------~~~~~--~~~~~~~lyv~gG~~~~~----i~~yd~~~~~ 332 (428)
.... . -++.||.....|...+..... +..+. .+.-+..+|++||..... ...||.....
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~ 474 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEH 474 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecccc
Confidence 3222 2 289999999999876431111 11111 234578899999865421 2445443332
Q ss_pred eeeCcccccc---cCCcccccc-eEEEEeCCeEEEEeCCC---------eEEEEEeecCCCCCCCccccccceeccCC
Q 014222 333 WSKHIDSKMH---LGNSRALEA-AALVPLNGKLCIIRNNM---------SISLVDVSKSNGERGASAEHLWETISGKG 397 (428)
Q Consensus 333 W~~v~~~~~~---~~~~~~~~~-~~~~~~~~~lyv~GG~~---------~~~~v~~yd~~~~~~~~~~~~W~~~~~~~ 397 (428)
=..+...... ...++..+. ..+-.-...|.+.-|.+ ..+..++|+..+ +.|..|....
T Consensus 475 ~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~-------~~w~cI~~I~ 545 (723)
T KOG2437|consen 475 VDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVR-------NSWSCIYKID 545 (723)
T ss_pred chhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecc-------cchhhHhhhH
Confidence 2222111000 000000000 11112234566665532 245688999999 8888776543
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.19 E-value=5.3e-11 Score=79.00 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=44.8
Q ss_pred CCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCc
Q 014222 205 RRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAM 255 (428)
Q Consensus 205 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~ 255 (428)
||..+++++++++||++||.... ....+++++||++|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999999999999743 456789999999999999999999876
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.18 E-value=5.6e-11 Score=78.86 Aligned_cols=49 Identities=33% Similarity=0.590 Sum_probs=44.3
Q ss_pred ccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCC
Q 014222 157 ALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRR 206 (428)
Q Consensus 157 r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r 206 (428)
|.++++++.++ +||++||........+++++||+.|++|+.+++||.+|
T Consensus 2 R~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 77899999988 99999999874457899999999999999999999887
No 32
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.07 E-value=5.7e-08 Score=87.26 Aligned_cols=194 Identities=12% Similarity=0.125 Sum_probs=118.5
Q ss_pred ceEEEEECCCCceeeCCCCCcCCc---c--eeeEEE----CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCC
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRH---F--FGSCVI----NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTA 254 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~---~--~~~~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 254 (428)
..+.++||.|++|+.+|+.+.++. . .+.+.. +-|+..+..... ......+++|++.+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~--~~~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG--NRNQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC--CCCCccEEEEEeCCCCccccccCCCC
Confidence 478999999999999986543211 1 111111 126666644321 12335789999999999998743322
Q ss_pred -ccceEEEEECCEEEEEecCCC--CceeEEEEeCCCCCeEe-cCCCCcCCC----CCceEEECCeEEEEEccCC---cEE
Q 014222 255 -MVPFIGVVYEGKWFLKGLGSH--RQVLSEAYQPETDSWFP-VYDGMVAGW----RNPSASLNRHLYALDCKDG---CKI 323 (428)
Q Consensus 255 -~~~~~~~~~~g~lyv~Gg~~~--~~~~i~~yd~~~~~W~~-~~~~~~~~~----~~~~~~~~~~lyv~gG~~~---~~i 323 (428)
......+.+||.||-+..... ....+.+||..+++|.+ ++. |.... ....+.++|+|.++..... -+|
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~-P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~I 170 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL-PCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDL 170 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec-CccccccccceEEEEECCEEEEEEecCCCCcEEE
Confidence 112237788999998864221 22258999999999995 643 32211 2234678999999875322 357
Q ss_pred EEEe-CCCCceeeCccccc-ccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 324 RVYD-EVTDSWSKHIDSKM-HLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 324 ~~yd-~~~~~W~~v~~~~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
|+.+ ...+.|++.-.++. .............+..+++|++.........+..||+.+
T Consensus 171 Wvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 171 WVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred EEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 7774 44667998765542 111111101234567788999877642223488999987
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.99 E-value=3.6e-10 Score=105.71 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=131.1
Q ss_pred CCCCceeeCCCC----------CcCCcceeeEEECC--EEEEEccccCCCCCCCCeEEEEeCCCCceEEcC---CCCCCc
Q 014222 191 ARTNKWHRAPDM----------LRRRHFFGSCVINN--CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFIS---DMSTAM 255 (428)
Q Consensus 191 ~~t~~W~~~~~~----------~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~~ 255 (428)
+.+-.|.++++. |..|.+|.++...+ .||+.||.+. -..+.+.+.|+...+.|+.+. ..|..|
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 345679887542 56799999998865 9999999973 345678999999999999885 367788
Q ss_pred cceEEEEECC--EEEEEecCC--------CCceeEEEEeCCCCCeEecCC------CCcCCCCCceEEECCe--EEEEEc
Q 014222 256 VPFIGVVYEG--KWFLKGLGS--------HRQVLSEAYQPETDSWFPVYD------GMVAGWRNPSASLNRH--LYALDC 317 (428)
Q Consensus 256 ~~~~~~~~~g--~lyv~Gg~~--------~~~~~i~~yd~~~~~W~~~~~------~~~~~~~~~~~~~~~~--lyv~gG 317 (428)
..|-++..-. +||++|-.- +....++.||..++.|..+.- .|.....+.++|.+.+ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 8888877654 899998521 122348999999999998743 1222344567777666 999999
Q ss_pred cCC-------cEEEEEeCCCCceeeCcccc------cccCCcccccceEEEEeCCeEEEEeCCCe---EEEEEeecCCC
Q 014222 318 KDG-------CKIRVYDEVTDSWSKHIDSK------MHLGNSRALEAAALVPLNGKLCIIRNNMS---ISLVDVSKSNG 380 (428)
Q Consensus 318 ~~~-------~~i~~yd~~~~~W~~v~~~~------~~~~~~~~~~~~~~~~~~~~lyv~GG~~~---~~~v~~yd~~~ 380 (428)
..- ..++.||.....|..+..-- ......|.+...-.+..+.++|++||... ......||+..
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDS 472 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecc
Confidence 532 35999999999999765321 11122232333445667889999999654 33344566555
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.97 E-value=7e-10 Score=72.58 Aligned_cols=47 Identities=36% Similarity=0.652 Sum_probs=41.4
Q ss_pred CCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCC
Q 014222 205 RRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252 (428)
Q Consensus 205 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 252 (428)
||..+++++++++||++||.+. .....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6889999999999999999975 3566789999999999999999876
No 35
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.91 E-value=9.9e-07 Score=79.22 Aligned_cols=207 Identities=12% Similarity=0.046 Sum_probs=122.0
Q ss_pred cccceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCc--cc--cccEEE-EEeCCEEEEEeeeCCCCCCCceEEEEE
Q 014222 116 IAEEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYS--EA--LGFGCA-VLSGCHLYLFGGKDPLKGSMRRVIFYS 190 (428)
Q Consensus 116 ~~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~--~r--~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd 190 (428)
..++.|.+... ..+.++||.|++|..||+.+.+.. .. .+++.. +.+..||..+...... .....+++|+
T Consensus 3 sCnGLlc~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLICFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYT 76 (230)
T ss_pred ccceEEEEecC-----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEE
Confidence 34566644321 468899999999999986543211 11 111111 1123356666543211 1345789999
Q ss_pred CCCCceeeCCCCCcC-CcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEE-cCCCCCCc----cceEEEEEC
Q 014222 191 ARTNKWHRAPDMLRR-RHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSF-ISDMSTAM----VPFIGVVYE 264 (428)
Q Consensus 191 ~~t~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~~----~~~~~~~~~ 264 (428)
..+++|+.+...+.. ......+.++|.+|.+.....+ .....+..||..+++|+. ++. |... .....+.++
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~~-P~~~~~~~~~~~L~~~~ 153 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIPL-PCGNSDSVDYLSLINYK 153 (230)
T ss_pred eCCCCccccccCCCCccccCCeEEECCEEEEEEEECCC--CCcEEEEEEEcccceEeeeeec-CccccccccceEEEEEC
Confidence 999999998743321 1112267889999999764321 111379999999999995 543 3322 234567789
Q ss_pred CEEEEEecCCC-CceeEEEEe-CCCCCeEecCCCC---cCCCC----CceEEECCeEEEEEccCCcE-EEEEeCCCC
Q 014222 265 GKWFLKGLGSH-RQVLSEAYQ-PETDSWFPVYDGM---VAGWR----NPSASLNRHLYALDCKDGCK-IRVYDEVTD 331 (428)
Q Consensus 265 g~lyv~Gg~~~-~~~~i~~yd-~~~~~W~~~~~~~---~~~~~----~~~~~~~~~lyv~gG~~~~~-i~~yd~~~~ 331 (428)
|+|.++..... ....++..+ .....|++.-..+ ..... ...+..+|+|++........ +..||+++|
T Consensus 154 G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 154 GKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred CEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 99988865322 234466664 3456798753211 11111 12345678888877532223 899999875
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.90 E-value=1.7e-09 Score=70.72 Aligned_cols=46 Identities=28% Similarity=0.542 Sum_probs=41.6
Q ss_pred ccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCC
Q 014222 157 ALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDML 203 (428)
Q Consensus 157 r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 203 (428)
|..+++++.++ +||++||.+......+++++||+.+++|+.+++||
T Consensus 2 R~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 77899999998 99999999875558899999999999999999886
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.86 E-value=8e-09 Score=68.02 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=41.0
Q ss_pred CCcceeeEEECCEEEEEccc-cCCCCCCCCeEEEEeCCCCceEEcCCCC
Q 014222 205 RRHFFGSCVINNCLYVAGGE-NGGVHRSLRSAEVYDPNKNRWSFISDMS 252 (428)
Q Consensus 205 ~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~v~~yd~~t~~W~~~~~~p 252 (428)
+|..|++++++++|||+||. ........+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 2222556789999999999999998775
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.80 E-value=1.1e-08 Score=67.32 Aligned_cols=46 Identities=33% Similarity=0.509 Sum_probs=40.9
Q ss_pred EEEEEeeeC-CCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEE
Q 014222 169 HLYLFGGKD-PLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVI 214 (428)
Q Consensus 169 ~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 214 (428)
+|||+||.+ ......+++|+||+.+++|++++++|.+|.+|+++++
T Consensus 3 ~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 3 KLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred EEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 899999998 3344789999999999999999999999999998763
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.76 E-value=2.3e-08 Score=65.82 Aligned_cols=49 Identities=29% Similarity=0.429 Sum_probs=43.1
Q ss_pred CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEE
Q 014222 215 NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVY 263 (428)
Q Consensus 215 ~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~ 263 (428)
+++||++||.+......++++++||+.+++|+.++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5799999999743466789999999999999999999999999998863
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.74 E-value=1.3e-08 Score=67.14 Aligned_cols=48 Identities=25% Similarity=0.611 Sum_probs=30.8
Q ss_pred ccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCc
Q 014222 157 ALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLR 204 (428)
Q Consensus 157 r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 204 (428)
|..|+++...++.||++||.+......+++++||+.+++|++++++|.
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred cceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 788998888644899999998765578999999999999999988873
No 41
>smart00612 Kelch Kelch domain.
Probab=98.69 E-value=3.1e-08 Score=64.57 Aligned_cols=47 Identities=36% Similarity=0.588 Sum_probs=41.1
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECC
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINN 216 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 216 (428)
+||++||.... ...+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998653 367899999999999999999999999999888764
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=5.8e-08 Score=63.88 Aligned_cols=46 Identities=33% Similarity=0.586 Sum_probs=39.3
Q ss_pred ccccEEEEEeCCEEEEEeee--CCCCCCCceEEEEECCCCceeeCCCCC
Q 014222 157 ALGFGCAVLSGCHLYLFGGK--DPLKGSMRRVIFYSARTNKWHRAPDML 203 (428)
Q Consensus 157 r~~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~~ 203 (428)
|..|++++.++ +||++||. .......+++++||+.+++|+.+++|+
T Consensus 2 r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 2 RYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 67899999988 99999999 333347889999999999999998874
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.66 E-value=3.2e-08 Score=65.25 Aligned_cols=47 Identities=26% Similarity=0.491 Sum_probs=31.0
Q ss_pred CCcceeeEEE-CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCC
Q 014222 205 RRHFFGSCVI-NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252 (428)
Q Consensus 205 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 252 (428)
||.+|+++.+ +++||++||.+.. ...++++++||+.+++|+.++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCCC
Confidence 6889999988 5899999999743 357889999999999999998876
No 44
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=5e-08 Score=63.59 Aligned_cols=47 Identities=38% Similarity=0.668 Sum_probs=40.9
Q ss_pred EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECC
Q 014222 217 CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEG 265 (428)
Q Consensus 217 ~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g 265 (428)
+||++||... ....+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus 1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999853 3457899999999999999999999999999888875
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.52 E-value=3.2e-06 Score=75.07 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=97.3
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCC----CceEEcC-CCCCCccce
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNK----NRWSFIS-DMSTAMVPF 258 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~~~~~ 258 (428)
.....||+.|++++.+....-.-...++..-+|++.+.||..++ .+.+-.|++.+ ..|.+.+ .|..+|...
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 34668999999999886443222222344458999999998643 35677888876 6798775 588899888
Q ss_pred EEEEE-CCEEEEEecCCCCceeEEEEeCCCC-----CeEecCCC---CcCCCCCce-EEECCeEEEEEccCCcEEEEEeC
Q 014222 259 IGVVY-EGKWFLKGLGSHRQVLSEAYQPETD-----SWFPVYDG---MVAGWRNPS-ASLNRHLYALDCKDGCKIRVYDE 328 (428)
Q Consensus 259 ~~~~~-~g~lyv~Gg~~~~~~~i~~yd~~~~-----~W~~~~~~---~~~~~~~~~-~~~~~~lyv~gG~~~~~i~~yd~ 328 (428)
++..+ ||+++|+||.... +.+.+..... .|..+... .....+..+ +.-+|+||+++.. .-.+||+
T Consensus 122 T~~~L~DG~vlIvGG~~~~--t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---~s~i~d~ 196 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNP--TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---GSIIYDY 196 (243)
T ss_pred cceECCCCCEEEEeCcCCC--cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---CcEEEeC
Confidence 87776 8999999997522 2344443221 12222210 111222222 2348999999864 4578899
Q ss_pred CCCce-eeCcccccc
Q 014222 329 VTDSW-SKHIDSKMH 342 (428)
Q Consensus 329 ~~~~W-~~v~~~~~~ 342 (428)
+++++ ..++.+|-.
T Consensus 197 ~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 197 KTNTVVRTLPDLPGG 211 (243)
T ss_pred CCCeEEeeCCCCCCC
Confidence 99987 777777643
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.48 E-value=6.7e-06 Score=73.02 Aligned_cols=177 Identities=11% Similarity=0.116 Sum_probs=111.5
Q ss_pred eEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCC----CCeEecCCC-CcCCCCCceEEE
Q 014222 234 SAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPET----DSWFPVYDG-MVAGWRNPSASL 308 (428)
Q Consensus 234 ~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~----~~W~~~~~~-~~~~~~~~~~~~ 308 (428)
....||+.|++++.+......-....+..-||++.+.||.......+-.|++.+ ..|.+.... ...+++..+..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 456799999999987654333333334445999999999766666677888865 679988753 444555555554
Q ss_pred -CCeEEEEEccCCcEEEEEeCCCC-----ceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCCCC
Q 014222 309 -NRHLYALDCKDGCKIRVYDEVTD-----SWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNGER 382 (428)
Q Consensus 309 -~~~lyv~gG~~~~~i~~yd~~~~-----~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~ 382 (428)
+|+++|+||......+.|.+... .|..+...... ....+.-+..+..+|+||++++.. -.+||+.+
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~--~~~nlYP~~~llPdG~lFi~an~~----s~i~d~~~-- 198 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDT--LPNNLYPFVHLLPDGNLFIFANRG----SIIYDYKT-- 198 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhcc--CccccCceEEEcCCCCEEEEEcCC----cEEEeCCC--
Confidence 89999999988655555544322 12222211111 111223466778899999998864 35799999
Q ss_pred CCcccccc-ceeccCCccccchh---hhhhhhhc----ccccceeeEeee
Q 014222 383 GASAEHLW-ETISGKGQFKTLVT---NLWSSIAG----RNRLKSHIVHCQ 424 (428)
Q Consensus 383 ~~~~~~~W-~~~~~~~~~~~f~~---~~~~~~~~----~~~~~~~~~~~~ 424 (428)
+++ ..++.||.. ...+ +-...+|- .++-..+|+-|.
T Consensus 199 -----n~v~~~lP~lPg~-~R~YP~sgssvmLPl~~~~~~~~~~evlvCG 242 (243)
T PF07250_consen 199 -----NTVVRTLPDLPGG-PRNYPASGSSVMLPLTDTPPNNYTAEVLVCG 242 (243)
T ss_pred -----CeEEeeCCCCCCC-ceecCCCcceEEecCccCCCCCCCeEEEEeC
Confidence 876 678888875 2222 22222222 245567777774
No 47
>PLN02772 guanylate kinase
Probab=98.39 E-value=2.5e-06 Score=80.41 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=66.4
Q ss_pred cCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcC---CCCCCccceEEEEE-CCEEEEEecCCCCcee
Q 014222 204 RRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFIS---DMSTAMVPFIGVVY-EGKWFLKGLGSHRQVL 279 (428)
Q Consensus 204 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~~~~~~~~~~-~g~lyv~Gg~~~~~~~ 279 (428)
.++..++++.+++++||+||.++. ....+.+++||..|.+|.... ..|.+|.+|+++++ +++|+|++++......
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~-~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEG-NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCC-ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccc
Confidence 478889999999999999998752 335679999999999998754 67889999999988 6899999765554555
Q ss_pred EEEEeCCC
Q 014222 280 SEAYQPET 287 (428)
Q Consensus 280 i~~yd~~~ 287 (428)
+|.....|
T Consensus 102 ~w~l~~~t 109 (398)
T PLN02772 102 IWFLEVDT 109 (398)
T ss_pred eEEEEcCC
Confidence 66665544
No 48
>PLN02772 guanylate kinase
Probab=98.15 E-value=1.6e-05 Score=75.06 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=63.7
Q ss_pred ccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeC---CCCCcCCcceeeEEE-CCEEEEEccccCCCCCCC
Q 014222 157 ALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRA---PDMLRRRHFFGSCVI-NNCLYVAGGENGGVHRSL 232 (428)
Q Consensus 157 r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 232 (428)
+..++++++++ ++||+||.+......+.+++||..|++|... ...|.+|.+|+++++ +++|+|+++... ..
T Consensus 25 ~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~----~~ 99 (398)
T PLN02772 25 KNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA----PD 99 (398)
T ss_pred CCcceeEEECC-EEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC----Cc
Confidence 66788888887 9999999876543678999999999999875 466889999999998 579999987542 12
Q ss_pred CeEEEEeCCC
Q 014222 233 RSAEVYDPNK 242 (428)
Q Consensus 233 ~~v~~yd~~t 242 (428)
+++|.....|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 5666665554
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.12 E-value=7.2e-06 Score=51.77 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCC
Q 014222 202 MLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNK 242 (428)
Q Consensus 202 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t 242 (428)
+|.+|..|++++++++||++||.........+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999999999999732356678999999876
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.07 E-value=0.0063 Score=59.34 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=127.1
Q ss_pred ccceEEEEeeCCCCceeEEEEeCCCCc--eEeCCCCCCCC-----ccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEE
Q 014222 117 AEEWIYVIKRDREGKISWHAFDPIYQL--WQPLPPIPKEY-----SEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFY 189 (428)
Q Consensus 117 ~~~~l~v~gg~~~~~~~~~~yd~~~~~--W~~l~~~~~~~-----~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 189 (428)
.++.+|+...+ ..+.+||..+++ |+.-..-.... .....-+.++.++ +||+.+ . ...++.+
T Consensus 68 ~~~~vy~~~~~----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~v~v~~-~------~g~l~al 135 (394)
T PRK11138 68 AYNKVYAADRA----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGG-KVYIGS-E------KGQVYAL 135 (394)
T ss_pred ECCEEEEECCC----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECC-EEEEEc-C------CCEEEEE
Confidence 37788887632 268899988775 76432111000 0011223455555 788743 1 2368999
Q ss_pred ECCCCc--eeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCCCC--CccceEEEEE
Q 014222 190 SARTNK--WHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDMST--AMVPFIGVVY 263 (428)
Q Consensus 190 d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~--~~~~~~~~~~ 263 (428)
|..|++ |+.-..- ....+.++.++.+|+..+. ..+..+|+.+. .|+.-...+. .+...+-++.
T Consensus 136 d~~tG~~~W~~~~~~---~~~ssP~v~~~~v~v~~~~--------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 136 NAEDGEVAWQTKVAG---EALSRPVVSDGLVLVHTSN--------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred ECCCCCCcccccCCC---ceecCCEEECCEEEEECCC--------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 998774 8753221 1122345668888885431 47899999876 4876543221 1112233456
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC--CeEecCCCCcCC--------CCCceEEECCeEEEEEccCCcEEEEEeCCCCc-
Q 014222 264 EGKWFLKGLGSHRQVLSEAYQPETD--SWFPVYDGMVAG--------WRNPSASLNRHLYALDCKDGCKIRVYDEVTDS- 332 (428)
Q Consensus 264 ~g~lyv~Gg~~~~~~~i~~yd~~~~--~W~~~~~~~~~~--------~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~- 332 (428)
++.+|+..+. ..+.++|++++ .|+.-...+... .....++.++.+|+.+. + ..++.+|+++.+
T Consensus 205 ~~~v~~~~~~----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-g~l~ald~~tG~~ 278 (394)
T PRK11138 205 FGGAIVGGDN----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-GNLVALDLRSGQI 278 (394)
T ss_pred CCEEEEEcCC----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-CeEEEEECCCCCE
Confidence 7887775432 23678888876 487532111110 11233567899998763 2 379999998764
Q ss_pred -eeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 333 -WSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 333 -W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
|+.-.. .. ...+..+++||+..... .+..+|+.+
T Consensus 279 ~W~~~~~------~~-----~~~~~~~~~vy~~~~~g---~l~ald~~t 313 (394)
T PRK11138 279 VWKREYG------SV-----NDFAVDGGRIYLVDQND---RVYALDTRG 313 (394)
T ss_pred EEeecCC------Cc-----cCcEEECCEEEEEcCCC---eEEEEECCC
Confidence 875211 11 23456789999976543 366777765
No 51
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.06 E-value=0.0012 Score=62.46 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=33.5
Q ss_pred CCCCChHHHHHHhcccccC-CccchhhhchHhHHhhhcC
Q 014222 67 LLPGLPDDLAIACLIRVPR-VEHCKLRLVCKRWHRLLSG 104 (428)
Q Consensus 67 ~~~~lpddl~~~il~rlp~-~~l~~~~~v~k~W~~l~~~ 104 (428)
-|++||+|++..|..+||. .++.++++||+.|++-...
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4889999999999999977 5899999999999986664
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.98 E-value=0.0083 Score=58.48 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=124.8
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCc--eEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQL--WQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 195 (428)
++.+|+.+. ...++++|..+++ |+.-. +.. ...+.++.++ .||+..+ ...++.+|+.|++
T Consensus 120 ~~~v~v~~~----~g~l~ald~~tG~~~W~~~~--~~~----~~ssP~v~~~-~v~v~~~-------~g~l~ald~~tG~ 181 (394)
T PRK11138 120 GGKVYIGSE----KGQVYALNAEDGEVAWQTKV--AGE----ALSRPVVSDG-LVLVHTS-------NGMLQALNESDGA 181 (394)
T ss_pred CCEEEEEcC----CCEEEEEECCCCCCcccccC--CCc----eecCCEEECC-EEEEECC-------CCEEEEEEccCCC
Confidence 667776542 2368999998875 76532 111 1112234455 7777532 2368999998876
Q ss_pred --eeeCCCCCc--CCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCCCCC--------ccceEEE
Q 014222 196 --WHRAPDMLR--RRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDMSTA--------MVPFIGV 261 (428)
Q Consensus 196 --W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~--------~~~~~~~ 261 (428)
|+.-...+. .+...+.++.++.+|+..+. ..+..+|+.+. .|+.--..+.. ....+-+
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EeeeecCCCCcccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 876433221 12223455667787775432 46788888776 57642211111 0113345
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCC--ceeeCc
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTD--SWSKHI 337 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~--~W~~v~ 337 (428)
+.++.+|+.+.. ..++++|+.+++ |+.-.. . ....++.+++||+... ...++.+|+++. .|+.-.
T Consensus 254 v~~~~vy~~~~~----g~l~ald~~tG~~~W~~~~~---~--~~~~~~~~~~vy~~~~--~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 254 VVGGVVYALAYN----GNLVALDLRSGQIVWKREYG---S--VNDFAVDGGRIYLVDQ--NDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred EECCEEEEEEcC----CeEEEEECCCCCEEEeecCC---C--ccCcEEECCEEEEEcC--CCeEEEEECCCCcEEEcccc
Confidence 679999987532 247899998774 875321 1 1134667899998764 247999999876 486421
Q ss_pred ccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 338 DSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
. . . . ...+.+..+++||+..... .+.+.|+.+
T Consensus 323 ~-~-~--~----~~~sp~v~~g~l~v~~~~G---~l~~ld~~t 354 (394)
T PRK11138 323 L-L-H--R----LLTAPVLYNGYLVVGDSEG---YLHWINRED 354 (394)
T ss_pred c-C-C--C----cccCCEEECCEEEEEeCCC---EEEEEECCC
Confidence 1 0 0 0 1133445789998864432 466777766
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.97 E-value=0.011 Score=56.15 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=82.3
Q ss_pred EEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCC---CeEEE-
Q 014222 162 CAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSL---RSAEV- 237 (428)
Q Consensus 162 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~---~~v~~- 237 (428)
.+.+.+++|+.++.. ..+.+||+.|..-...|.++.+.....++.++++||++........... ...|+
T Consensus 71 F~al~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EEEecCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 344445588888543 3488999999999988988887777778888999999987642211100 04444
Q ss_pred -EeC--------CCCceEEcCCCCCCcc-------ceEEEEE-CCEEEEE-ecCCCCceeEEEEeCCCCCeEecCC
Q 014222 238 -YDP--------NKNRWSFISDMSTAMV-------PFIGVVY-EGKWFLK-GLGSHRQVLSEAYQPETDSWFPVYD 295 (428)
Q Consensus 238 -yd~--------~t~~W~~~~~~p~~~~-------~~~~~~~-~g~lyv~-Gg~~~~~~~i~~yd~~~~~W~~~~~ 295 (428)
|++ ..-.|+.++++|.... -.+-+++ +..|+|. .+.. ...++||..+.+|+++..
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc---eEEEEEEcCCcceeeccc
Confidence 442 2337888887665332 2344555 5578884 2211 225899999999999976
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.94 E-value=0.00054 Score=62.19 Aligned_cols=43 Identities=33% Similarity=0.702 Sum_probs=38.6
Q ss_pred CCCCCh----HHHHHHhcccccCCccchhhhchHhHHhhhcCChhHH
Q 014222 67 LLPGLP----DDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYS 109 (428)
Q Consensus 67 ~~~~lp----ddl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~f~~ 109 (428)
.+..|| |++.+.||+.|...+|+.+..|||+|+.+++++...+
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 466688 8999999999999999999999999999999997544
No 55
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.92 E-value=6e-06 Score=53.65 Aligned_cols=42 Identities=26% Similarity=0.648 Sum_probs=35.9
Q ss_pred CCCChHHHHHHhcccccCCccchhhhchHhHHhhhcCChhHH
Q 014222 68 LPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYS 109 (428)
Q Consensus 68 ~~~lpddl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~f~~ 109 (428)
|..||+|++.+|+..++..++.++..|||+|+.+..++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 457999999999999999999999999999999998886543
No 56
>PF13854 Kelch_5: Kelch motif
Probab=97.87 E-value=3e-05 Score=48.91 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=32.1
Q ss_pred cccccEEEEEeCCEEEEEeeeCC-CCCCCceEEEEECCCC
Q 014222 156 EALGFGCAVLSGCHLYLFGGKDP-LKGSMRRVIFYSARTN 194 (428)
Q Consensus 156 ~r~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~ 194 (428)
+|..|++++.++ +||++||.+. .....+++|+||..+.
T Consensus 4 ~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 4 PRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999988 8999999984 4457899999998763
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.71 E-value=0.032 Score=49.89 Aligned_cols=205 Identities=16% Similarity=0.172 Sum_probs=118.5
Q ss_pred eEEEEeCCCCc--eEeCCCCCCCCccccccEE--EEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc--eeeCCCCCcCC
Q 014222 133 SWHAFDPIYQL--WQPLPPIPKEYSEALGFGC--AVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK--WHRAPDMLRRR 206 (428)
Q Consensus 133 ~~~~yd~~~~~--W~~l~~~~~~~~~r~~~~~--~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r 206 (428)
.+.++|+.+++ |+.- +... ..... ++..++.+|+.. ....++.+|..|++ |+.-.+ . +
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~----~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~--~-~ 67 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPG----IGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLP--G-P 67 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSS----CSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECS--S-C
T ss_pred EEEEEECCCCCEEEEEE--CCCC----CCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeecc--c-c
Confidence 56788887775 6652 1111 12222 443444888873 23479999998885 765432 1 1
Q ss_pred cceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceE-EcCCCCC--CccceEEEEECCEEEEEecCCCCceeEE
Q 014222 207 HFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWS-FISDMST--AMVPFIGVVYEGKWFLKGLGSHRQVLSE 281 (428)
Q Consensus 207 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~-~~~~~p~--~~~~~~~~~~~g~lyv~Gg~~~~~~~i~ 281 (428)
........++.+|+..+. ..+.++|..+. .|+ .....+. ........+.++.+|+... ...+.
T Consensus 68 ~~~~~~~~~~~v~v~~~~--------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~ 135 (238)
T PF13360_consen 68 ISGAPVVDGGRVYVGTSD--------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLV 135 (238)
T ss_dssp GGSGEEEETTEEEEEETT--------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEE
T ss_pred ccceeeecccccccccce--------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEE
Confidence 122247788999987631 38899997765 688 3433222 2233445555788887653 22478
Q ss_pred EEeCCCCC--eEecCCCCcCCCC--------CceEEECCeEEEEEccCCcEEEEEeCCCCc--eeeCcccccccCCcccc
Q 014222 282 AYQPETDS--WFPVYDGMVAGWR--------NPSASLNRHLYALDCKDGCKIRVYDEVTDS--WSKHIDSKMHLGNSRAL 349 (428)
Q Consensus 282 ~yd~~~~~--W~~~~~~~~~~~~--------~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~--W~~v~~~~~~~~~~~~~ 349 (428)
++|+++++ |+.-...+..... ...+..++.+|+..+.. .+..+|.++++ |+.. ... .
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--~~~~~d~~tg~~~w~~~--~~~----~--- 204 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG--RVVAVDLATGEKLWSKP--ISG----I--- 204 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS--SEEEEETTTTEEEEEEC--SS-----E---
T ss_pred EEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC--eEEEEECCCCCEEEEec--CCC----c---
Confidence 99998774 7764432221111 11233467888876543 25566999886 8543 111 1
Q ss_pred cceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 350 EAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.......++.||+.... ..+..+|+.+
T Consensus 205 -~~~~~~~~~~l~~~~~~---~~l~~~d~~t 231 (238)
T PF13360_consen 205 -YSLPSVDGGTLYVTSSD---GRLYALDLKT 231 (238)
T ss_dssp -CECEECCCTEEEEEETT---TEEEEEETTT
T ss_pred -cCCceeeCCEEEEEeCC---CEEEEEECCC
Confidence 12256677888887622 3477899888
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.71 E-value=0.055 Score=52.38 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=120.4
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCc--eEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQL--WQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 195 (428)
++.+|+...+ ..+++||+.+++ |+.-.. .. ...+.++.++ .+|+.+ . ...++.+|..+++
T Consensus 65 ~~~v~v~~~~----g~v~a~d~~tG~~~W~~~~~--~~----~~~~p~v~~~-~v~v~~-~------~g~l~ald~~tG~ 126 (377)
T TIGR03300 65 GGKVYAADAD----GTVVALDAETGKRLWRVDLD--ER----LSGGVGADGG-LVFVGT-E------KGEVIALDAEDGK 126 (377)
T ss_pred CCEEEEECCC----CeEEEEEccCCcEeeeecCC--CC----cccceEEcCC-EEEEEc-C------CCEEEEEECCCCc
Confidence 6777776532 368999998776 754222 11 1123344444 777643 2 2378999987774
Q ss_pred --eeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCCCC--CccceEEEEECCEEEE
Q 014222 196 --WHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDMST--AMVPFIGVVYEGKWFL 269 (428)
Q Consensus 196 --W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~--~~~~~~~~~~~g~lyv 269 (428)
|+.-.. . ......++.++++|+..+. ..+.++|+.+. .|+.-...+. .+...+.+..++.+|+
T Consensus 127 ~~W~~~~~--~-~~~~~p~v~~~~v~v~~~~--------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~ 195 (377)
T TIGR03300 127 ELWRAKLS--S-EVLSPPLVANGLVVVRTND--------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV 195 (377)
T ss_pred EeeeeccC--c-eeecCCEEECCEEEEECCC--------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence 875322 1 1122344567888875431 46899998765 5875432221 1122334556777665
Q ss_pred EecCCCCceeEEEEeCCCC--CeEecCCCCcCC--------CCCceEEECCeEEEEEccCCcEEEEEeCCCCc--eeeCc
Q 014222 270 KGLGSHRQVLSEAYQPETD--SWFPVYDGMVAG--------WRNPSASLNRHLYALDCKDGCKIRVYDEVTDS--WSKHI 337 (428)
Q Consensus 270 ~Gg~~~~~~~i~~yd~~~~--~W~~~~~~~~~~--------~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~--W~~v~ 337 (428)
.. .. ..+.++|++++ .|+.-...+... .....++.++.+|+... ...++.||+++.+ |+.-.
T Consensus 196 ~~-~~---g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 196 GF-AG---GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred EC-CC---CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECCCCcEEEeecc
Confidence 32 11 24778998776 486432111110 11223456888888653 2379999998763 76531
Q ss_pred ccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 338 DSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
. . ....+..+++||+.... ..+..+|..+
T Consensus 270 --~----~-----~~~p~~~~~~vyv~~~~---G~l~~~d~~t 298 (377)
T TIGR03300 270 --S----S-----YQGPAVDDNRLYVTDAD---GVVVALDRRS 298 (377)
T ss_pred --C----C-----ccCceEeCCEEEEECCC---CeEEEEECCC
Confidence 1 1 12344578899987533 3466777765
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.65 E-value=0.067 Score=51.77 Aligned_cols=215 Identities=15% Similarity=0.109 Sum_probs=119.5
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCc--eEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQL--WQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 195 (428)
++.+|+...+ ..++++|+.+++ |+.-. +.. ...+.++.++ .+|+..+ ...++.+|+.+++
T Consensus 105 ~~~v~v~~~~----g~l~ald~~tG~~~W~~~~--~~~----~~~~p~v~~~-~v~v~~~-------~g~l~a~d~~tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEK----GEVIALDAEDGKELWRAKL--SSE----VLSPPLVANG-LVVVRTN-------DGRLTALDAATGE 166 (377)
T ss_pred CCEEEEEcCC----CEEEEEECCCCcEeeeecc--Cce----eecCCEEECC-EEEEECC-------CCeEEEEEcCCCc
Confidence 6677765432 378999998775 76432 111 1122233444 6777532 2368899998764
Q ss_pred --eeeCCCCCc--CCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCCCCCc--------cceEEE
Q 014222 196 --WHRAPDMLR--RRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDMSTAM--------VPFIGV 261 (428)
Q Consensus 196 --W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~~--------~~~~~~ 261 (428)
|+.-...+. .+...+.++.++.+|+ |..+ ..+..+|+.+. .|+.-...+... ...+.+
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE
Confidence 775332221 1223344566776654 3321 46889998775 576432211111 122344
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCC--ceeeCc
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTD--SWSKHI 337 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~--~W~~v~ 337 (428)
..++.+|+.+.. ..+++||+++++ |+.-.. .....++.+++||+... ...++.+|..+. .|+.-.
T Consensus 239 ~~~~~vy~~~~~----g~l~a~d~~tG~~~W~~~~~-----~~~~p~~~~~~vyv~~~--~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 239 VDGGQVYAVSYQ----GRVAALDLRSGRVLWKRDAS-----SYQGPAVDDNRLYVTDA--DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred EECCEEEEEEcC----CEEEEEECCCCcEEEeeccC-----CccCceEeCCEEEEECC--CCeEEEEECCCCcEEEcccc
Confidence 568899987532 247899998764 765311 12234567899998753 247999998766 487522
Q ss_pred ccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 338 DSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+... ...+.+..+++||+.... ..+.++|+.+
T Consensus 308 -~~~~-------~~ssp~i~g~~l~~~~~~---G~l~~~d~~t 339 (377)
T TIGR03300 308 -LKYR-------QLTAPAVVGGYLVVGDFE---GYLHWLSRED 339 (377)
T ss_pred -ccCC-------ccccCEEECCEEEEEeCC---CEEEEEECCC
Confidence 1111 012334467888875432 2466777765
No 60
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.62 E-value=0.0035 Score=55.76 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=71.0
Q ss_pred EEEeeeCCCCCCCceEEEEECCCCc--------ee---eCCCCCcCCcceeeEEE--CC--EEEEEccccC---------
Q 014222 171 YLFGGKDPLKGSMRRVIFYSARTNK--------WH---RAPDMLRRRHFFGSCVI--NN--CLYVAGGENG--------- 226 (428)
Q Consensus 171 yv~GG~~~~~~~~~~v~~yd~~t~~--------W~---~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~--------- 226 (428)
++-||+..++..+..+++....+.. .. -+...|.+|++|++-++ .| ...++||..-
T Consensus 42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTe 121 (337)
T PF03089_consen 42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTE 121 (337)
T ss_pred EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchh
Confidence 3457877766666777776654332 11 14678999999987766 23 4677888641
Q ss_pred ---CCCCCCCeEEEEeCCCCceE--EcCCCCCCccceEEEEECCEEEEEecC
Q 014222 227 ---GVHRSLRSAEVYDPNKNRWS--FISDMSTAMVPFIGVVYEGKWFLKGLG 273 (428)
Q Consensus 227 ---~~~~~~~~v~~yd~~t~~W~--~~~~~p~~~~~~~~~~~~g~lyv~Gg~ 273 (428)
..-+....|+..|++-...+ .++.+..+...|.+.+-++.+|++||.
T Consensus 122 nWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 122 NWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGH 173 (337)
T ss_pred hcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccE
Confidence 00123456788888877654 456777888889999999999999984
No 61
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.47 E-value=4.9e-05 Score=47.59 Aligned_cols=38 Identities=29% Similarity=0.669 Sum_probs=35.2
Q ss_pred ChHHHHHHhcccccCCccchhhhchHhHHhhhcCChhH
Q 014222 71 LPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYY 108 (428)
Q Consensus 71 lpddl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~f~ 108 (428)
||+|++.+|+.+++..++.+++.|||+|+.+...+.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 69999999999999999999999999999999988654
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.36 E-value=0.011 Score=56.23 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=78.0
Q ss_pred ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCC---------ceeEEEEe
Q 014222 214 INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHR---------QVLSEAYQ 284 (428)
Q Consensus 214 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~---------~~~i~~yd 284 (428)
.+.+|+.++.. ....+||..|..-...|.++.+.....++.++++||++...... ...+..|+
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 58899988654 34789999999888888887766666777889999999653211 22233444
Q ss_pred C--------CCCCeEecCCCCcCCCC-------CceEEE-CCeEEEE-EccCCcEEEEEeCCCCceeeCcc
Q 014222 285 P--------ETDSWFPVYDGMVAGWR-------NPSASL-NRHLYAL-DCKDGCKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 285 ~--------~~~~W~~~~~~~~~~~~-------~~~~~~-~~~lyv~-gG~~~~~i~~yd~~~~~W~~v~~ 338 (428)
+ ..-.|+.++++|..... .+.+++ +..|+|. .+.. ...+.||.++.+|+++++
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-eEEEEEEcCCcceeeccc
Confidence 2 22268888764433222 123566 6778884 3321 258999999999999975
No 63
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.33 E-value=9.2e-05 Score=48.23 Aligned_cols=42 Identities=29% Similarity=0.506 Sum_probs=34.8
Q ss_pred CCCChHHHHHHhcccccCCccchhhhchHhHHhhhcCChhHH
Q 014222 68 LPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYS 109 (428)
Q Consensus 68 ~~~lpddl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~f~~ 109 (428)
+..||+|++.+|+.+++..++.+++.|||+|++++.++.+..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 456999999999999999999999999999999999886543
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.28 E-value=0.12 Score=46.12 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=97.6
Q ss_pred eEEEEECCCCc--eeeCCCCCcCCccee--eEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCCCCCccce
Q 014222 185 RVIFYSARTNK--WHRAPDMLRRRHFFG--SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDMSTAMVPF 258 (428)
Q Consensus 185 ~v~~yd~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~~~~~ 258 (428)
.+..+|+.+++ |+.- +........ .+..++.+|+..+ ...+.++|..+. .|+.-. +......
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~~~~~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGPISGA 71 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSCGGSG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--cccccce
Confidence 56677776664 6652 111122222 3447889998743 258999998776 566543 2222222
Q ss_pred EEEEECCEEEEEecCCCCceeEEEEeCCCC--CeE-ecCCCCcCC-CCCc-eEEECCeEEEEEccCCcEEEEEeCCCCc-
Q 014222 259 IGVVYEGKWFLKGLGSHRQVLSEAYQPETD--SWF-PVYDGMVAG-WRNP-SASLNRHLYALDCKDGCKIRVYDEVTDS- 332 (428)
Q Consensus 259 ~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~--~W~-~~~~~~~~~-~~~~-~~~~~~~lyv~gG~~~~~i~~yd~~~~~- 332 (428)
....++.+|+..... .++++|..++ .|+ .....+... .... ..+.++.+|+... ...+..+|+++.+
T Consensus 72 -~~~~~~~v~v~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 72 -PVVDGGRVYVGTSDG----SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--SGKLVALDPKTGKL 144 (238)
T ss_dssp -EEEETTEEEEEETTS----EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--CSEEEEEETTTTEE
T ss_pred -eeeccccccccccee----eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--cCcEEEEecCCCcE
Confidence 477899999886322 6889998776 498 343322222 2222 3344666766653 3489999988764
Q ss_pred -eeeCcccccccCCc--ccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 333 -WSKHIDSKMHLGNS--RALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 333 -W~~v~~~~~~~~~~--~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
|+.-...+...... .......++..++.+|+..+... .+.+ |..+
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--~~~~-d~~t 192 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR--VVAV-DLAT 192 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS--EEEE-ETTT
T ss_pred EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe--EEEE-ECCC
Confidence 77644332211000 00012445556788998876654 2334 8877
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.06 E-value=0.051 Score=49.78 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCCeEEEEeCCCCceEEcCCCCCCccceEEEE-ECCEEEEEecC---CCCceeEEEEeCCCCCeEecCCCCcCCCCCc--
Q 014222 231 SLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV-YEGKWFLKGLG---SHRQVLSEAYQPETDSWFPVYDGMVAGWRNP-- 304 (428)
Q Consensus 231 ~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~g~lyv~Gg~---~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~-- 304 (428)
....+-.||+.+.+|..+..--.+.. ..+.. -+++||+.|-. ......+..||.++.+|+.+..........+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 46788999999999998765322211 22222 37788887742 2234458899999999998866221111111
Q ss_pred eE-E---ECCeEEEEEccCC--cEEEEEeCCCCceeeCcc
Q 014222 305 SA-S---LNRHLYALDCKDG--CKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 305 ~~-~---~~~~lyv~gG~~~--~~i~~yd~~~~~W~~v~~ 338 (428)
+. . -...+++.|.... .-+..| +..+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 21 1 2346777776432 246666 5668999876
No 66
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.93 E-value=0.51 Score=46.87 Aligned_cols=227 Identities=9% Similarity=-0.065 Sum_probs=114.6
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS 211 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 211 (428)
..++..|.....-..+...+.+ ......+-+|.+|+...-.+ ....++++|..+++-+.+...+........
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~----~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~w 269 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEP----LMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRF 269 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCc----ccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeE
Confidence 4677777765544444332211 11112223453444432111 235899999998877666554422221111
Q ss_pred EEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeE
Q 014222 212 CVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWF 291 (428)
Q Consensus 212 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~ 291 (428)
.--+.+|++....+ ....++.+|..+++.+.+...... .......-+|+..++.........++.+|..+++++
T Consensus 270 SPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 270 SPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRAI-DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 11234565554322 135789999999988777543211 111222335553333333233456899999999988
Q ss_pred ecCCCCcCCCCCceEEECC-eEEEEEccCC-cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 292 PVYDGMVAGWRNPSASLNR-HLYALDCKDG-CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~lyv~gG~~~-~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
.+.... .....+...-+| .|++.....+ ..|+.+|+.++..+.+...... . ..+....+..|+.......
T Consensus 344 ~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d--~-----~ps~spdG~~I~~~~~~~g 415 (448)
T PRK04792 344 RLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLD--E-----SPSVAPNGTMVIYSTTYQG 415 (448)
T ss_pred EEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCC--C-----CceECCCCCEEEEEEecCC
Confidence 775211 111112223344 4555443222 4689999999887776532111 1 1233333444555444444
Q ss_pred EEEEEeecCCC
Q 014222 370 ISLVDVSKSNG 380 (428)
Q Consensus 370 ~~~v~~yd~~~ 380 (428)
...+++++.+.
T Consensus 416 ~~~l~~~~~~G 426 (448)
T PRK04792 416 KQVLAAVSIDG 426 (448)
T ss_pred ceEEEEEECCC
Confidence 45577777644
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.85 E-value=0.38 Score=44.24 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=88.1
Q ss_pred EEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEE-eCCEEEEEeeeCCCCCCCceEEEEECCCCceee-
Q 014222 121 IYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVL-SGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHR- 198 (428)
Q Consensus 121 l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~- 198 (428)
+|+.++. ...+.+||+.+++-...-.... . ..+++.. ++..+|+.++. ...+.+||..+.+...
T Consensus 3 ~~~s~~~---d~~v~~~d~~t~~~~~~~~~~~----~-~~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~ 68 (300)
T TIGR03866 3 AYVSNEK---DNTISVIDTATLEVTRTFPVGQ----R-PRGITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGT 68 (300)
T ss_pred EEEEecC---CCEEEEEECCCCceEEEEECCC----C-CCceEECCCCCEEEEEECC------CCeEEEEECCCCcEEEe
Confidence 4555432 2378889988776432211111 1 1223333 34356777543 2468899998877644
Q ss_pred CCCCCcCCcceeeEEE--CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceE-EEEECCEEEEEecCCC
Q 014222 199 APDMLRRRHFFGSCVI--NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFI-GVVYEGKWFLKGLGSH 275 (428)
Q Consensus 199 ~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~-~~~~~g~lyv~Gg~~~ 275 (428)
++....+ ...+.. ++.+|+.++.+ ..+.+||+.+.+- +..++....... ...-+|.+++++....
T Consensus 69 ~~~~~~~---~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 69 LPSGPDP---ELFALHPNGKILYIANEDD-------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred ccCCCCc---cEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC
Confidence 2221111 122222 34566665432 4789999987542 221111111122 2233677666654322
Q ss_pred CceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCce
Q 014222 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSW 333 (428)
Q Consensus 276 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W 333 (428)
..+..||..+.+-..... ...........-+++.+++++.....+.+||.++.+.
T Consensus 137 --~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 --NMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred --CeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 234567876654322110 1111111122335555545544445799999987643
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.79 E-value=0.26 Score=45.32 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=71.5
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEE-ECC-EEEEEccccCCCCCCCCeEEEEeCCCCceE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCV-INN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWS 246 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~ 246 (428)
.+|+.++.+ ..+.+||+.+++-...-.... .. ..++. -++ .+|+.++.+ ..+..||..+.+..
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~-~~-~~l~~~~dg~~l~~~~~~~-------~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQ-RP-RGITLSKDGKLLYVCASDS-------DTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCC-CC-CceEECCCCCEEEEEECCC-------CeEEEEECCCCcEE
Confidence 467776543 378889988776433211111 11 11222 233 577776532 57889999887654
Q ss_pred E-cCCCCCCccceEEEEECC-EEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceE-EECCeEEEEEccCCcEE
Q 014222 247 F-ISDMSTAMVPFIGVVYEG-KWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSA-SLNRHLYALDCKDGCKI 323 (428)
Q Consensus 247 ~-~~~~p~~~~~~~~~~~~g-~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~i 323 (428)
. ++..... ...+..-++ .+|+.++.. ..+..||+.+.+-. ............+ .-++.+++++..+++.+
T Consensus 67 ~~~~~~~~~--~~~~~~~~g~~l~~~~~~~---~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 139 (300)
T TIGR03866 67 GTLPSGPDP--ELFALHPNGKILYIANEDD---NLVTVIDIETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETTNMA 139 (300)
T ss_pred EeccCCCCc--cEEEECCCCCEEEEEcCCC---CeEEEEECCCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCCCeE
Confidence 3 2221111 111222244 466654322 24778998775421 1111111111122 23677777766555567
Q ss_pred EEEeCCCCc
Q 014222 324 RVYDEVTDS 332 (428)
Q Consensus 324 ~~yd~~~~~ 332 (428)
..||.++.+
T Consensus 140 ~~~d~~~~~ 148 (300)
T TIGR03866 140 HFIDTKTYE 148 (300)
T ss_pred EEEeCCCCe
Confidence 788887654
No 69
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.72 E-value=0.72 Score=45.77 Aligned_cols=186 Identities=12% Similarity=-0.024 Sum_probs=98.4
Q ss_pred CCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcc
Q 014222 129 EGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHF 208 (428)
Q Consensus 129 ~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~ 208 (428)
++...++.+|..+++-..+...+.. ......+-+|..|++....+ ...+++++|..+++.+.+.........
T Consensus 239 ~g~~~L~~~dl~tg~~~~lt~~~g~----~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~~~~~~ 310 (448)
T PRK04792 239 NRKAEIFVQDIYTQVREKVTSFPGI----NGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHRAIDTE 310 (448)
T ss_pred CCCcEEEEEECCCCCeEEecCCCCC----cCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCCCCccc
Confidence 3445789999988877766654431 11112223454566554333 235899999999988877543211111
Q ss_pred eeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCC
Q 014222 209 FGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 209 ~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
. ...-++ .|++..... ....++.+|..+.+++.+..-.. ........-+|+..++.........++.+|+.+
T Consensus 311 p-~wSpDG~~I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 311 P-SWHPDGKSLIFTSERG-----GKPQIYRVNLASGKVSRLTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred e-EECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEEecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1 112244 455543221 12578999999998887742111 111122333554433333333345688999999
Q ss_pred CCeEecCCCCcCCCCCceEEECCe-EEEEEccCC-cEEEEEeCCCC
Q 014222 288 DSWFPVYDGMVAGWRNPSASLNRH-LYALDCKDG-CKIRVYDEVTD 331 (428)
Q Consensus 288 ~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~-~~i~~yd~~~~ 331 (428)
+..+.+.... .. ..+...-+|+ |++.....+ ..++++|.+..
T Consensus 384 g~~~~lt~~~-~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 384 GAMQVLTSTR-LD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCeEEccCCC-CC-CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8887775421 11 1223333444 444333222 35777787433
No 70
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.68 E-value=0.71 Score=45.18 Aligned_cols=228 Identities=10% Similarity=-0.021 Sum_probs=112.1
Q ss_pred CCceeEEEEeCCCCceEeCCCCCCCCccccccEE-EEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCc
Q 014222 129 EGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGC-AVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRH 207 (428)
Q Consensus 129 ~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~-~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 207 (428)
.....++..|.....=..+...... ..+. .+-+| +.+++..... ....++++|..+++-..+........
T Consensus 167 ~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg-~~la~~~~~~---~~~~i~v~d~~~g~~~~~~~~~~~~~ 237 (417)
T TIGR02800 167 SRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDG-QKLAYVSFES---GKPEIYVQDLATGQREKVASFPGMNG 237 (417)
T ss_pred CCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCC-CEEEEEEcCC---CCcEEEEEECCCCCEEEeecCCCCcc
Confidence 3455788888764433333322111 1111 22334 3333433322 23579999999887666554432222
Q ss_pred ceeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCC
Q 014222 208 FFGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPE 286 (428)
Q Consensus 208 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~ 286 (428)
... ..-++ .|++..... ....++.+|..++..+.+......... ....-+|+..++.........++.+|..
T Consensus 238 ~~~-~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 238 APA-FSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDTE-PSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred ceE-ECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCCC-EEECCCCCEEEEEECCCCCceEEEEECC
Confidence 211 12244 565554322 125789999998887776543221111 1222355433333322223458899998
Q ss_pred CCCeEecCCCCcCCCCCceEEECCeEEEEEccC--CcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEE
Q 014222 287 TDSWFPVYDGMVAGWRNPSASLNRHLYALDCKD--GCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCII 364 (428)
Q Consensus 287 ~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~--~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~ 364 (428)
+..++.+.... .........-+++.+++.... ...|+.+|..++.++.+.... . . ...+....++.|++.
T Consensus 311 ~~~~~~l~~~~-~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~---~---~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 311 GGEVRRLTFRG-GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-L---D---ESPSFAPNGRMILYA 382 (417)
T ss_pred CCCEEEeecCC-CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-C---C---CCceECCCCCEEEEE
Confidence 88887765311 111112223356555554332 237999999987777665321 1 0 112222333445544
Q ss_pred eCCCeEEEEEeecCCC
Q 014222 365 RNNMSISLVDVSKSNG 380 (428)
Q Consensus 365 GG~~~~~~v~~yd~~~ 380 (428)
.-......+++++.+.
T Consensus 383 ~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 383 TTRGGRGVLGLVSTDG 398 (417)
T ss_pred EeCCCcEEEEEEECCC
Confidence 3333334566666544
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.67 E-value=0.13 Score=46.50 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=103.3
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEE-eCCEEEEEeeeCCCCCCCceEEEEECCCCce
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVL-SGCHLYLFGGKDPLKGSMRRVIFYSARTNKW 196 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 196 (428)
++.||+..- ....++.+|+.+++-..+.. +. ..++++. .++.+|+... ....++|+.++++
T Consensus 11 ~g~l~~~D~---~~~~i~~~~~~~~~~~~~~~-~~------~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 11 DGRLYWVDI---PGGRIYRVDPDTGEVEVIDL-PG------PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKV 72 (246)
T ss_dssp TTEEEEEET---TTTEEEEEETTTTEEEEEES-SS------EEEEEEECTTSEEEEEET--------TCEEEEETTTTEE
T ss_pred CCEEEEEEc---CCCEEEEEECCCCeEEEEec-CC------CceEEEEccCCEEEEEEc--------CceEEEecCCCcE
Confidence 456666642 23478999999887654322 11 2345555 3447888743 2356679999999
Q ss_pred eeCCCCC-----cCCcceeeEEECCEEEEEccccCCCCCCC--CeEEEEeCCCCceEEcCCCCCCccceEEEEECC-EEE
Q 014222 197 HRAPDML-----RRRHFFGSCVINNCLYVAGGENGGVHRSL--RSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEG-KWF 268 (428)
Q Consensus 197 ~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g-~ly 268 (428)
+.+...+ ..+..-.++--+|.+|+-.-.... .... ..++++++. .+.+.+..- .......+..-++ .||
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~-~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG-ASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC-TTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc-cccccccceEEECCC-CeEEEEecC-cccccceEECCcchhee
Confidence 8876553 222222344447888886432211 1111 569999998 555544321 1111112222344 578
Q ss_pred EEecCCCCceeEEEEeCCCCC--eEecCC--CCcCCCC--CceEE-ECCeEEEEEccCCcEEEEEeCCCCceeeCc
Q 014222 269 LKGLGSHRQVLSEAYQPETDS--WFPVYD--GMVAGWR--NPSAS-LNRHLYALDCKDGCKIRVYDEVTDSWSKHI 337 (428)
Q Consensus 269 v~Gg~~~~~~~i~~yd~~~~~--W~~~~~--~~~~~~~--~~~~~-~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~ 337 (428)
+.-.. ...+++||+.... +..... ....... ..+++ -+|+||+..- .+..|++||++...-..+.
T Consensus 150 v~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 150 VADSF---NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETTSCEEEEEE
T ss_pred ecccc---cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCCccEEEEEc
Confidence 75322 2347788875433 332211 0111111 12333 4789999854 3458999999966665554
No 72
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.54 E-value=0.072 Score=48.85 Aligned_cols=110 Identities=14% Similarity=0.251 Sum_probs=68.9
Q ss_pred CCceEEEEECCCCceeeCCCCCcCCcceeeEEE-CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCC-----CCCc
Q 014222 182 SMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVI-NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDM-----STAM 255 (428)
Q Consensus 182 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~~ 255 (428)
....+..||..+.+|..+..-..... ..+... +++||+.|-.... ......+..||..+.+|+.++.- |.+.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~-~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLN-GTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEEC-CCCceeEEEEecCCCeeeecCCcccccCCCcE
Confidence 35689999999999998865422211 223333 6788887765422 22456789999999999988762 3332
Q ss_pred cceEEEEEC-CEEEEEecCCCCceeEEEEeCCCCCeEecCC
Q 014222 256 VPFIGVVYE-GKWFLKGLGSHRQVLSEAYQPETDSWFPVYD 295 (428)
Q Consensus 256 ~~~~~~~~~-g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~ 295 (428)
........+ +.+++.|........+..|| ..+|+.+..
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 222222223 35777765444444577885 468998865
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.44 E-value=0.43 Score=48.19 Aligned_cols=285 Identities=15% Similarity=0.129 Sum_probs=139.6
Q ss_pred CCCCCCCChHHHHHHhcccccCCccchhhhchHhHHhhhcCChhHHHHHhh--Ccc---cceEEEEeeCC--CCceeEE-
Q 014222 64 QSPLLPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFYYSLRKSL--GIA---EEWIYVIKRDR--EGKISWH- 135 (428)
Q Consensus 64 ~~~~~~~lpddl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~f~~~r~~~--~~~---~~~l~v~gg~~--~~~~~~~- 135 (428)
....+..||-++...|+..++.+.+..++.||+.|+.+..+.......... ... ........... ....+++
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~ 183 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYR 183 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhh
Confidence 455788999999999999999999999999999999999887543322211 111 01111110000 0000111
Q ss_pred EEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeC-CCCCcCCcceeeEEE
Q 014222 136 AFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRA-PDMLRRRHFFGSCVI 214 (428)
Q Consensus 136 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~~~~~ 214 (428)
...-..+.|......... .+..+.....-. .++.+|.-........+.+||..+..-... ........ .+....
T Consensus 184 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V-~~l~~~ 258 (537)
T KOG0274|consen 184 RRFRLSKNWRKLFRRGYK--VLLGTDDHVVLC--LQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGV-WGLAFP 258 (537)
T ss_pred hhhhccccccccccccce--eecccCcchhhh--heeecCeEEecCCCceeEEeecccceEEEeeccCCCCCc-eeEEEe
Confidence 112222345444332211 011111111100 111122111111233456777776654433 11122111 122233
Q ss_pred -CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEec
Q 014222 215 -NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPV 293 (428)
Q Consensus 215 -~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~ 293 (428)
++.+++.|..+ .++.++|..++.-..+-. ..............+..+|.. ..++.+||..+..-..+
T Consensus 259 ~~~~~lvsgS~D-------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~--D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 259 SGGDKLVSGSTD-------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSR--DNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCEEEEEecC-------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeeccC--CceEEEEeccCcceEEE
Confidence 35566666654 567778877775543321 111222222233444444321 33467888876654443
Q ss_pred CCCCcCCCCCc--eEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCC-eEEEEeCCCeE
Q 014222 294 YDGMVAGWRNP--SASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNG-KLCIIRNNMSI 370 (428)
Q Consensus 294 ~~~~~~~~~~~--~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~ 370 (428)
-. . ...+ ++.+++.+.+.|..++ .|-+||+.+.+--. .+..... ..-...+++ ..++-|+.+
T Consensus 327 ~~---~-h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~~~cl~--sl~gH~~------~V~sl~~~~~~~~~Sgs~D-- 391 (537)
T KOG0274|consen 327 LR---G-HTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRTGKCLK--SLSGHTG------RVYSLIVDSENRLLSGSLD-- 391 (537)
T ss_pred ec---c-ccccEEEEEecCCEEEEEecCc-eEEEEEhhhceeee--eecCCcc------eEEEEEecCcceEEeeeec--
Confidence 21 1 1112 4567888888888887 89999998544332 2221211 122335566 555556555
Q ss_pred EEEEeecCCC
Q 014222 371 SLVDVSKSNG 380 (428)
Q Consensus 371 ~~v~~yd~~~ 380 (428)
..+.++|+.+
T Consensus 392 ~~IkvWdl~~ 401 (537)
T KOG0274|consen 392 TTIKVWDLRT 401 (537)
T ss_pred cceEeecCCc
Confidence 4577889888
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.43 E-value=0.87 Score=43.06 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=86.7
Q ss_pred eEEEEeeCCCCceeEEEEeCCC-CceEeCCCCCCCCccccccEEEEE-eCCEEEEEeeeCCCCCCCceEEEEECC-CCce
Q 014222 120 WIYVIKRDREGKISWHAFDPIY-QLWQPLPPIPKEYSEALGFGCAVL-SGCHLYLFGGKDPLKGSMRRVIFYSAR-TNKW 196 (428)
Q Consensus 120 ~l~v~gg~~~~~~~~~~yd~~~-~~W~~l~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W 196 (428)
.+|+.... ...+.+||..+ +++..+...+.. .....++.. ++..||+.+. . ...+.+|+.. ++++
T Consensus 3 ~~y~~~~~---~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~g~l 70 (330)
T PRK11028 3 IVYIASPE---SQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADDGAL 70 (330)
T ss_pred EEEEEcCC---CCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCCCce
Confidence 46666432 23566666643 566655444322 112233333 4435777543 1 2356667665 4556
Q ss_pred eeCCCCCcCCcceeeEE-ECC-EEEEEccccCCCCCCCCeEEEEeCCCCc--eEEcCCCCCCccceEEEEE-CC-EEEEE
Q 014222 197 HRAPDMLRRRHFFGSCV-INN-CLYVAGGENGGVHRSLRSAEVYDPNKNR--WSFISDMSTAMVPFIGVVY-EG-KWFLK 270 (428)
Q Consensus 197 ~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~~~~~~~~~~-~g-~lyv~ 270 (428)
..+...+.+.....++. -++ .+|+.. +. ...+.+||..++. ...+...+.....+.++.. ++ .+|+.
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSAS-YN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEE-cC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEe
Confidence 55443332222122222 244 466653 22 2577888876431 1122222221222333333 44 56665
Q ss_pred ecCCCCceeEEEEeCCCC-CeEecCC---CCcCCCCC-ceEEE--CCeEEEEEccCCcEEEEEeCC--CCceeeC
Q 014222 271 GLGSHRQVLSEAYQPETD-SWFPVYD---GMVAGWRN-PSASL--NRHLYALDCKDGCKIRVYDEV--TDSWSKH 336 (428)
Q Consensus 271 Gg~~~~~~~i~~yd~~~~-~W~~~~~---~~~~~~~~-~~~~~--~~~lyv~gG~~~~~i~~yd~~--~~~W~~v 336 (428)
... ...+..||..++ ....... ..+.+... .++.. +..+|+....+ +.|.+||.+ +++.+.+
T Consensus 144 ~~~---~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 144 CLK---EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-SSVDVWQLKDPHGEIECV 214 (330)
T ss_pred eCC---CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-CEEEEEEEeCCCCCEEEE
Confidence 422 235778888653 2221100 01111111 12222 34677775433 577777765 4455444
No 75
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.42 E-value=0.71 Score=45.27 Aligned_cols=240 Identities=11% Similarity=0.009 Sum_probs=124.2
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccE-EEEEeCCEEEEEeeeCCCCC-----CCceEEEEECCCCcee--eCCCC
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFG-CAVLSGCHLYLFGGKDPLKG-----SMRRVIFYSARTNKWH--RAPDM 202 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~-~~~~~~~~lyv~GG~~~~~~-----~~~~v~~yd~~t~~W~--~~~~~ 202 (428)
...+.++|..+++...- .+. ...++ ++-..++..++....+.... ....++.+...|..-. .+-.-
T Consensus 149 ~~~l~v~Dl~tg~~l~d-~i~-----~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPD-GIE-----NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp EEEEEEEETTTTEEEEE-EEE-----EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred eEEEEEEECCCCcCcCC-ccc-----ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 35788899988853221 111 12233 33343324554444433211 2567888888777644 22111
Q ss_pred CcCCc-ceeeE-EECCEEEEEccccCCCCCCCCeEEEEeCCCC-----ceEEcCCCCCCccceEEEEECCEEEEEecCCC
Q 014222 203 LRRRH-FFGSC-VINNCLYVAGGENGGVHRSLRSAEVYDPNKN-----RWSFISDMSTAMVPFIGVVYEGKWFLKGLGSH 275 (428)
Q Consensus 203 ~~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~-----~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~ 275 (428)
+.... ...+. .-+++..++.-... .. .+.++..|.... .|..+.+-... ....+...++.+|+......
T Consensus 223 ~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~~a 298 (414)
T PF02897_consen 223 PDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTNDDA 298 (414)
T ss_dssp TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-
T ss_pred cCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCCCC
Confidence 22222 22222 23444444333221 11 367888899875 78877542222 22334456999999876555
Q ss_pred CceeEEEEeCCCCC---eE-ecCCCCcCC-CCCceEEECCeEEEEEccCC-cEEEEEeCC-CCceeeCcccccccCCccc
Q 014222 276 RQVLSEAYQPETDS---WF-PVYDGMVAG-WRNPSASLNRHLYALDCKDG-CKIRVYDEV-TDSWSKHIDSKMHLGNSRA 348 (428)
Q Consensus 276 ~~~~i~~yd~~~~~---W~-~~~~~~~~~-~~~~~~~~~~~lyv~gG~~~-~~i~~yd~~-~~~W~~v~~~~~~~~~~~~ 348 (428)
....+..++..... |. .+.+ .... .-..+...++.|++..-.++ ..|.+||.. +..-..++. + ..+..
T Consensus 299 ~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~-p-~~g~v-- 373 (414)
T PF02897_consen 299 PNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL-P-EAGSV-- 373 (414)
T ss_dssp TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES-S-SSSEE--
T ss_pred CCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC-C-cceEE--
Confidence 55667888887765 66 4432 2222 12224467899988875544 479999999 333333322 1 21110
Q ss_pred ccceEEEEeCCeEEE-EeCCCeEEEEEeecCCCCCCCcccccccee
Q 014222 349 LEAAALVPLNGKLCI-IRNNMSISLVDVSKSNGERGASAEHLWETI 393 (428)
Q Consensus 349 ~~~~~~~~~~~~lyv-~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~ 393 (428)
.+...-...+.+++ +.+......++.||..+ .+.+.+
T Consensus 374 -~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t-------~~~~~~ 411 (414)
T PF02897_consen 374 -SGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT-------GELTLL 411 (414)
T ss_dssp -EEEES-TT-SEEEEEEEETTEEEEEEEEETTT-------TCEEEE
T ss_pred -eccCCCCCCCEEEEEEeCCCCCCEEEEEECCC-------CCEEEE
Confidence 00111112344544 67777888999999999 665554
No 76
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.34 E-value=1.2 Score=43.95 Aligned_cols=226 Identities=8% Similarity=-0.087 Sum_probs=112.6
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccEEE-EEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcce
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCA-VLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFF 209 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 209 (428)
...+++.|.....=..+...... ..... +-+|.+|+... ... ....++++|..+++.+.+...+......
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s-~~~---g~~~i~~~dl~~g~~~~l~~~~g~~~~~ 251 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMS-YAN---GRPRVYLLDLETGQRELVGNFPGMTFAP 251 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEE-ecC---CCCEEEEEECCCCcEEEeecCCCcccCc
Confidence 45788888865543444322111 11222 23443444332 221 1358999999999887776544322221
Q ss_pred eeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCC
Q 014222 210 GSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETD 288 (428)
Q Consensus 210 ~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~ 288 (428)
. ..-+| +|++....+ ....++.+|..+..-+.+...+.. .......-+|+-.++.........++.+|....
T Consensus 252 ~-~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 252 R-FSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAI-DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred E-ECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCc-cCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 1 12244 555443322 135788999998877766543321 111223335553334332223345889998887
Q ss_pred CeEecCCCCcCCCCCceEEECC-eEEEEEccC-CcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeC
Q 014222 289 SWFPVYDGMVAGWRNPSASLNR-HLYALDCKD-GCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRN 366 (428)
Q Consensus 289 ~W~~~~~~~~~~~~~~~~~~~~-~lyv~gG~~-~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 366 (428)
..+.+... ......+...-+| .|++..... ...++++|++++....+.... . . ........+..|+....
T Consensus 325 ~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~---~---~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 325 NPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF-L---V---EGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC-C---C---CCCeECCCCCEEEEEEc
Confidence 77776532 1111112222344 454443222 247999998877665554311 1 1 12232233344444433
Q ss_pred CCeE---EEEEeecCCC
Q 014222 367 NMSI---SLVDVSKSNG 380 (428)
Q Consensus 367 ~~~~---~~v~~yd~~~ 380 (428)
.... ..++.+|.+.
T Consensus 397 ~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cCCCCCcceEEEEECCC
Confidence 2221 4678888876
No 77
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.32 E-value=1.2 Score=43.84 Aligned_cols=139 Identities=9% Similarity=-0.062 Sum_probs=77.1
Q ss_pred CeEEEEeCCCCceEEcCCCCCCccceEEEEECCE-EEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECC-
Q 014222 233 RSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNR- 310 (428)
Q Consensus 233 ~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~-lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~- 310 (428)
..++++|+.+.+-+.+...+... ......-+|+ |++.. .......++.+|..+...+.+..... ....+...-++
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~-~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~ 299 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVL-SKDGNPEIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGR 299 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEE-ccCCCceEEEEECCCCCeEEcccCCC-CcCCeEECCCCC
Confidence 57999999988877766443211 1122233554 44332 22223458899999998887764221 11112222244
Q ss_pred eEEEEEccCC-cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 311 HLYALDCKDG-CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 311 ~lyv~gG~~~-~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.|++.....+ ..|+.+|..+++++.+.... . .. ........++.|++.........++++|..+
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~--~~---~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-N--YN---ARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEeecCC-C--Cc---cceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 4655543322 47999999988887764211 0 00 1122233455666665444445688999887
No 78
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.29 E-value=0.25 Score=44.59 Aligned_cols=183 Identities=21% Similarity=0.194 Sum_probs=100.5
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEE--CCEEEEEccccCCCCCCCCeEEEEeCCCCceE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVI--NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWS 246 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~ 246 (428)
.+|+..- ....++++|+.++.-..+.... ..+++.. ++++|+.... ....+|+.+.+++
T Consensus 13 ~l~~~D~------~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~---------~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 13 RLYWVDI------PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSG---------GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEET------TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETT---------CEEEEETTTTEEE
T ss_pred EEEEEEc------CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcC---------ceEEEecCCCcEE
Confidence 6887732 3458999999998765432211 3334444 6888887542 3466699999998
Q ss_pred EcCCCC-----CCccceEEEEECCEEEEEec--CC-CCc--eeEEEEeCCCCCeEecCCCCcCCCCCceE-EECC-eEEE
Q 014222 247 FISDMS-----TAMVPFIGVVYEGKWFLKGL--GS-HRQ--VLSEAYQPETDSWFPVYDGMVAGWRNPSA-SLNR-HLYA 314 (428)
Q Consensus 247 ~~~~~p-----~~~~~~~~~~~~g~lyv~Gg--~~-~~~--~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~-~lyv 314 (428)
.+...+ ..+..-.++.-+|.||+-.- .. ... ..++++++. .+.+.+.... ..-...+ .-++ .||+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--GFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--SSEEEEEEETTSSEEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--ccccceEECCcchheee
Confidence 876553 22223334445889998632 11 111 358899998 6665554311 1112233 2344 5777
Q ss_pred EEccCCcEEEEEeCCCCc--eeeCc---ccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 315 LDCKDGCKIRVYDEVTDS--WSKHI---DSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 315 ~gG~~~~~i~~yd~~~~~--W~~v~---~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
..-. ...|++||.+... +.... .++...+.+ ...++--+|.||+..-. ...|.+||++.
T Consensus 151 ~ds~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p----DG~~vD~~G~l~va~~~--~~~I~~~~p~G 214 (246)
T PF08450_consen 151 ADSF-NGRIWRFDLDADGGELSNRRVFIDFPGGPGYP----DGLAVDSDGNLWVADWG--GGRIVVFDPDG 214 (246)
T ss_dssp EETT-TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE----EEEEEBTTS-EEEEEET--TTEEEEEETTS
T ss_pred cccc-cceeEEEeccccccceeeeeeEEEcCCCCcCC----CcceEcCCCCEEEEEcC--CCEEEEECCCc
Confidence 6643 3579999986443 33222 111111111 12334447899997321 12588999988
No 79
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.21 E-value=1.5 Score=43.44 Aligned_cols=189 Identities=10% Similarity=-0.066 Sum_probs=98.4
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
...++.+|+.+++...+...+.. ......+-+|.+|++....+ ...+++++|..++..+.+...+......
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~----~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~- 295 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM----TFAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTDSPAIDTSP- 295 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc----ccCcEECCCCCEEEEEEecC----CCceEEEEECCCCceEEccCCCCccCce-
Confidence 35788999988888777654432 11112223453555443332 2357999999988877775433211111
Q ss_pred eEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCE-EEEEecCCCCceeEEEEeCCCC
Q 014222 211 SCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLSEAYQPETD 288 (428)
Q Consensus 211 ~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~-lyv~Gg~~~~~~~i~~yd~~~~ 288 (428)
...-++ +|++..... ....++++|..+...+.+.... .........-+|+ |++.. .......++.+|+..+
T Consensus 296 ~~spDG~~i~f~s~~~-----g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~-~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 296 SYSPDGSQIVFESDRS-----GSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTK-QGGGQFSIGVMKPDGS 368 (435)
T ss_pred eEcCCCCEEEEEECCC-----CCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEE-cCCCceEEEEEECCCC
Confidence 122244 444432211 1257889998887776664321 1111222333554 44433 2222346888998777
Q ss_pred CeEecCCCCcCCCCCceEEECCe-EEEEEccCC----cEEEEEeCCCCceeeCc
Q 014222 289 SWFPVYDGMVAGWRNPSASLNRH-LYALDCKDG----CKIRVYDEVTDSWSKHI 337 (428)
Q Consensus 289 ~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~----~~i~~yd~~~~~W~~v~ 337 (428)
....+.... ........-+|+ |++.....+ ..++.+|.+...-..+.
T Consensus 369 ~~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 369 GERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ceEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 666554321 112223333554 444332211 46899998776555554
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.12 E-value=0.12 Score=49.43 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=90.5
Q ss_pred CceEEEEECCCCceee-CCCCCcCCcceeeE-EECCEEEEEccccCCCCCCCCeEEEEeCCCCce-EEcCCCCCCccceE
Q 014222 183 MRRVIFYSARTNKWHR-APDMLRRRHFFGSC-VINNCLYVAGGENGGVHRSLRSAEVYDPNKNRW-SFISDMSTAMVPFI 259 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~~~~~~ 259 (428)
+..+.+|+..+..-.+ +..+ .+.-+++. --+|+|.++|+.. ..|.+||..+..- +.+..-..+.....
T Consensus 47 S~rvqly~~~~~~~~k~~srF--k~~v~s~~fR~DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRF--KDVVYSVDFRSDGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQAPVHVTK 117 (487)
T ss_pred ccEEEEEecchhhhhhhHHhh--ccceeEEEeecCCeEEEccCCc-------CcEEEeccccHHHHHHHhhccCceeEEE
Confidence 3467777776654332 2211 11222222 2379999998864 5789999555211 11111111111112
Q ss_pred EEEECCEEEEEecCCCCceeEEEEeCCCCCeE-ecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcc
Q 014222 260 GVVYEGKWFLKGLGSHRQVLSEAYQPETDSWF-PVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 260 ~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~ 338 (428)
-...++.++++|++.. .+..+|..+..=+ .+...-..-+.......++.|.+.||+++ .|..||....+ ..+-.
T Consensus 118 f~~~d~t~l~s~sDd~---v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~-~~v~e 192 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDK---VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG-KVRLWDTRSLT-SRVVE 192 (487)
T ss_pred ecccCCeEEEecCCCc---eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc-eEEEEEeccCC-ceeEE
Confidence 2335888999887542 2335555555421 11111111122223356889999999997 89999998884 33333
Q ss_pred cccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 339 SKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+....+. ...+...+|.+++.-|.+ .+.++|..+
T Consensus 193 lnhg~pV-----e~vl~lpsgs~iasAgGn---~vkVWDl~~ 226 (487)
T KOG0310|consen 193 LNHGCPV-----ESVLALPSGSLIASAGGN---SVKVWDLTT 226 (487)
T ss_pred ecCCCce-----eeEEEcCCCCEEEEcCCC---eEEEEEecC
Confidence 3322211 233444454555543332 356777764
No 81
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.09 E-value=1.6 Score=42.95 Aligned_cols=181 Identities=13% Similarity=0.047 Sum_probs=95.7
Q ss_pred CceEEEEECCCCceeeCCCCCcCCcceeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEE
Q 014222 183 MRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGV 261 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~ 261 (428)
...++++|..+++-+.+...+..-... ...-+| +|++....+ + ...++++|..+...+.+...+... .....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~-~~SpDG~~la~~~~~~-g----~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~~ 294 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAP-AWSPDGSKLAFVLSKD-G----NPEIYVMDLASRQLSRVTNHPAID-TEPFW 294 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCe-EECCCCCEEEEEEccC-C----CceEEEEECCCCCeEEcccCCCCc-CCeEE
Confidence 347999999998877776543211111 111234 555443221 1 257899999999887775432211 11122
Q ss_pred EECCE-EEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEE-CCeEEEEEccCC-cEEEEEeCCCCceeeCcc
Q 014222 262 VYEGK-WFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASL-NRHLYALDCKDG-CKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 262 ~~~g~-lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~gG~~~-~~i~~yd~~~~~W~~v~~ 338 (428)
.-+|+ ||+.. .......++.+|..+++++.+... ......+...- ++.|++....++ ..++.+|+++...+.+..
T Consensus 295 spDg~~i~f~s-~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 295 GKDGRTLYFTS-DRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred CCCCCEEEEEE-CCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 23554 54443 222334588999988888777531 11111112222 345555543222 469999999988877754
Q ss_pred cccccCCcccccceEEEEeCCeEEEE-eCCCeEEEEEeecCCC
Q 014222 339 SKMHLGNSRALEAAALVPLNGKLCII-RNNMSISLVDVSKSNG 380 (428)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~lyv~-GG~~~~~~v~~yd~~~ 380 (428)
.... ... ....+|+.+++ ....+...++..+...
T Consensus 373 ~~~~-------~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 373 TSLD-------ESP-SVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCC-------CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 2111 112 23345554444 3333344566777654
No 82
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.06 E-value=1.7 Score=42.93 Aligned_cols=182 Identities=12% Similarity=-0.001 Sum_probs=95.6
Q ss_pred CceEEEEECCCCceeeCCCCCcCCcceeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEE
Q 014222 183 MRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGV 261 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~ 261 (428)
...++++|..+++-+.+...+...... ...-+| +|++....+ + ...++++|+.+.+-+.+....... .....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~-~~SpDG~~l~~~~s~~-g----~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~ 299 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAP-SFSPDGRRLALTLSRD-G----NPEIYVMDLGSRQLTRLTNHFGID-TEPTW 299 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCc-eECCCCCEEEEEEeCC-C----CceEEEEECCCCCeEECccCCCCc-cceEE
Confidence 457999999988877776554221111 112234 565543322 1 257999999988776664322111 11223
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEEC-CeEEEEEccCC-cEEEEEeCCCCceeeCccc
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLN-RHLYALDCKDG-CKIRVYDEVTDSWSKHIDS 339 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~lyv~gG~~~-~~i~~yd~~~~~W~~v~~~ 339 (428)
.-+|+-.++.........++.+|..+++.+.+... ..........-+ +.|++..+.++ ..|+++|+.++....+...
T Consensus 300 spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~ 378 (433)
T PRK04922 300 APDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG 378 (433)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC
Confidence 33565444433322334578899888888776531 111111122224 44555544322 3699999998888766532
Q ss_pred ccccCCcccccceEEEEeCCe-EEEEeCCCeEEEEEeecCCC
Q 014222 340 KMHLGNSRALEAAALVPLNGK-LCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~v~~yd~~~ 380 (428)
. . . .... ...+++ |+..........++.+|.+.
T Consensus 379 ~--~--~---~~p~-~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 379 S--L--D---ESPS-FAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred C--C--C---CCce-ECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1 1 0 1122 334454 44443333345677777755
No 83
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.00 E-value=0.14 Score=41.19 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=54.4
Q ss_pred EEECCEEEEEecC-CCCceeEEEEeCCCCCeEecCCC--C-cCCCCCceEEECCeEEEEEccCC-----cEEEEE-eCCC
Q 014222 261 VVYEGKWFLKGLG-SHRQVLSEAYQPETDSWFPVYDG--M-VAGWRNPSASLNRHLYALDCKDG-----CKIRVY-DEVT 330 (428)
Q Consensus 261 ~~~~g~lyv~Gg~-~~~~~~i~~yd~~~~~W~~~~~~--~-~~~~~~~~~~~~~~lyv~gG~~~-----~~i~~y-d~~~ 330 (428)
+.+||.+|.++.. ......+.+||..+++|+.+..+ + ........+.++|+|-++.-... -+||+. |.++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 4689999988654 33445689999999999988763 1 12222335678999998864332 257777 5777
Q ss_pred CceeeCcc
Q 014222 331 DSWSKHID 338 (428)
Q Consensus 331 ~~W~~v~~ 338 (428)
++|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 89998744
No 84
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.00 E-value=0.36 Score=45.55 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=88.2
Q ss_pred EEEEEeee-CCCCC--CC-ceEEEEECCCC-----ceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEe
Q 014222 169 HLYLFGGK-DPLKG--SM-RRVIFYSARTN-----KWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYD 239 (428)
Q Consensus 169 ~lyv~GG~-~~~~~--~~-~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 239 (428)
..+++|.. ..... .. ..+.+|+.... +.+.+......-.-.+.+.+++++.+..| +.+.+|+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g---------~~l~v~~ 113 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG---------NKLYVYD 113 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET---------TEEEEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec---------CEEEEEE
Confidence 56777643 21111 22 67999998885 55655554444445567778998666554 4788898
Q ss_pred CCCCc-eEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEE-CCeEEEEEc
Q 014222 240 PNKNR-WSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASL-NRHLYALDC 317 (428)
Q Consensus 240 ~~t~~-W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~gG 317 (428)
...++ +...+.+..+.......+.++.|++. +......+..|+.+..+-..++.......-.++..+ ++..++++-
T Consensus 114 l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vg--D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 114 LDNSKTLLKKAFYDSPFYITSLSVFKNYILVG--DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp EETTSSEEEEEEE-BSSSEEEEEEETTEEEEE--ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred ccCcccchhhheecceEEEEEEeccccEEEEE--EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 88888 88877666555666777888877763 333345577889877777777653333332334445 665444433
Q ss_pred cCCc-EEEEEeCC
Q 014222 318 KDGC-KIRVYDEV 329 (428)
Q Consensus 318 ~~~~-~i~~yd~~ 329 (428)
..++ .+..|+++
T Consensus 192 ~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 192 KDGNLFVLRYNPE 204 (321)
T ss_dssp TTSEEEEEEE-SS
T ss_pred CCCeEEEEEECCC
Confidence 3332 35566653
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.93 E-value=0.38 Score=43.33 Aligned_cols=154 Identities=13% Similarity=-0.005 Sum_probs=89.3
Q ss_pred eEE-ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC
Q 014222 211 SCV-INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS 289 (428)
Q Consensus 211 ~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~ 289 (428)
... .+|.+|..-|... .+.+..||+.|.+=....++|...++-..+.++++||.+.-. ......||+.+
T Consensus 50 L~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk---~~~~f~yd~~t-- 119 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK---EGTGFVYDPNT-- 119 (264)
T ss_dssp EEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS---SSEEEEEETTT--
T ss_pred EEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec---CCeEEEEcccc--
Confidence 444 5789999888642 368899999999877777788877888899999999998643 23467999975
Q ss_pred eEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 290 WFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 290 W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
.+.+.........=+.+.-+..|++..|. +.++..||++= +.+..+...........---+-.++|+||.= ...
T Consensus 120 l~~~~~~~y~~EGWGLt~dg~~Li~SDGS--~~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i~G~IyAN--VW~ 193 (264)
T PF05096_consen 120 LKKIGTFPYPGEGWGLTSDGKRLIMSDGS--SRLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYINGKIYAN--VWQ 193 (264)
T ss_dssp TEEEEEEE-SSS--EEEECSSCEEEE-SS--SEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEEE--ETT
T ss_pred ceEEEEEecCCcceEEEcCCCEEEEECCc--cceEEECCccc--ceEEEEEEEECCEECCCcEeEEEEcCEEEEE--eCC
Confidence 44444322222222355667778888884 47999999853 2222211110000000012234557776652 223
Q ss_pred EEEEEeecCCC
Q 014222 370 ISLVDVSKSNG 380 (428)
Q Consensus 370 ~~~v~~yd~~~ 380 (428)
.+.+.+-||++
T Consensus 194 td~I~~Idp~t 204 (264)
T PF05096_consen 194 TDRIVRIDPET 204 (264)
T ss_dssp SSEEEEEETTT
T ss_pred CCeEEEEeCCC
Confidence 45567777777
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.93 E-value=0.4 Score=45.78 Aligned_cols=185 Identities=12% Similarity=0.141 Sum_probs=101.2
Q ss_pred eCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee--EEECCE-EEEEccccCCCCCCCCeEEEEeCCC
Q 014222 166 SGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS--CVINNC-LYVAGGENGGVHRSLRSAEVYDPNK 242 (428)
Q Consensus 166 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~--~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~t 242 (428)
....+.+.+|.++ .-.++..|-.+|. .+.++...+.-... ..-+|+ ..+.+|.. .-++.||.++
T Consensus 223 p~~plllvaG~d~----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-------ky~ysyDle~ 289 (514)
T KOG2055|consen 223 PTAPLLLVAGLDG----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-------KYLYSYDLET 289 (514)
T ss_pred CCCceEEEecCCC----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-------eEEEEeeccc
Confidence 3446888888874 3477888888886 45554332222211 122454 56666653 5789999999
Q ss_pred CceEEcCCCCC---CccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEE-CCeEEEEEcc
Q 014222 243 NRWSFISDMST---AMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASL-NRHLYALDCK 318 (428)
Q Consensus 243 ~~W~~~~~~p~---~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~gG~ 318 (428)
.+-+++.++-. .-.....+..++.+.++.|.++ .|......++.|-.--. +..........- +.+|+++||.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G---~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG---HIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCc---eEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence 98888875432 1122234445666666655432 35566667777643211 111111111122 3557777765
Q ss_pred CCcEEEEEeCCCCc----eeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 319 DGCKIRVYDEVTDS----WSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 319 ~~~~i~~yd~~~~~----W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
. .||++|..++. |..=+.. . ...-+...++..+.+|...+ .|-+||-++
T Consensus 366 G--eV~v~nl~~~~~~~rf~D~G~v------~---gts~~~S~ng~ylA~GS~~G--iVNIYd~~s 418 (514)
T KOG2055|consen 366 G--EVYVWNLRQNSCLHRFVDDGSV------H---GTSLCISLNGSYLATGSDSG--IVNIYDGNS 418 (514)
T ss_pred c--eEEEEecCCcceEEEEeecCcc------c---eeeeeecCCCceEEeccCcc--eEEEeccch
Confidence 4 79999999873 3332221 0 11234456777666665444 355777555
No 87
>PRK13684 Ycf48-like protein; Provisional
Probab=95.86 E-value=1.7 Score=41.25 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=103.1
Q ss_pred CCCCceEeCCCC-CCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCE
Q 014222 139 PIYQLWQPLPPI-PKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNC 217 (428)
Q Consensus 139 ~~~~~W~~l~~~-~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~ 217 (428)
-.-.+|..+... ..+ ...+.+...++..+++.|.. ..+++-+-.-.+|+.+.... .-.-+.+....+.
T Consensus 116 DgG~tW~~~~~~~~~~---~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g 184 (334)
T PRK13684 116 DGGKNWTRIPLSEKLP---GSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDG 184 (334)
T ss_pred CCCCCCeEccCCcCCC---CCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCC-cceEEEEEECCCC
Confidence 334589887532 111 12233444444356665432 23555444566899875433 2233344444444
Q ss_pred EEEEccccCCCCCCCCeEEE-EeCCCCceEEcCCCCCCccceEEE-EECCEEEEEecCCCCceeEEEEe-C-CCCCeEec
Q 014222 218 LYVAGGENGGVHRSLRSAEV-YDPNKNRWSFISDMSTAMVPFIGV-VYEGKWFLKGLGSHRQVLSEAYQ-P-ETDSWFPV 293 (428)
Q Consensus 218 iyv~GG~~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~~~~~~~~-~~~g~lyv~Gg~~~~~~~i~~yd-~-~~~~W~~~ 293 (428)
.|++.|.. ..++. .|....+|+.+... .......++ .-+++++++|... ...+. . .-.+|+.+
T Consensus 185 ~~v~~g~~-------G~i~~s~~~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg~~G-----~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 185 KYVAVSSR-------GNFYSTWEPGQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLARGG-----QIRFNDPDDLESWSKP 251 (334)
T ss_pred eEEEEeCC-------ceEEEEcCCCCCeEEEeeCC-CcccceeeeEcCCCCEEEEecCC-----EEEEccCCCCCccccc
Confidence 44444432 12222 34555689887543 222223333 3477888886421 12332 2 23489976
Q ss_pred CCCCc-CCCCCc-eEE-ECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeE
Q 014222 294 YDGMV-AGWRNP-SAS-LNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSI 370 (428)
Q Consensus 294 ~~~~~-~~~~~~-~~~-~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 370 (428)
..+.. ...... .+. -++.+|++|.. + .++.-.....+|+.+.... ..+.. ....+...++++|++|....
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~-G-~v~~S~d~G~tW~~~~~~~-~~~~~---~~~~~~~~~~~~~~~G~~G~- 324 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEIWAGGGN-G-TLLVSKDGGKTWEKDPVGE-EVPSN---FYKIVFLDPEKGFVLGQRGV- 324 (334)
T ss_pred cCCccccccceeeEEEcCCCCEEEEcCC-C-eEEEeCCCCCCCeECCcCC-CCCcc---eEEEEEeCCCceEEECCCce-
Confidence 54212 111112 222 26678888753 2 4554455567999975311 11111 12445556788988887543
Q ss_pred EEEEeecCCC
Q 014222 371 SLVDVSKSNG 380 (428)
Q Consensus 371 ~~v~~yd~~~ 380 (428)
+-.|+...
T Consensus 325 --il~~~~~~ 332 (334)
T PRK13684 325 --LLRYVGSA 332 (334)
T ss_pred --EEEecCCC
Confidence 44566544
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.72 E-value=0.23 Score=44.66 Aligned_cols=105 Identities=17% Similarity=0.026 Sum_probs=69.9
Q ss_pred ECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccc
Q 014222 263 YEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMH 342 (428)
Q Consensus 263 ~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~ 342 (428)
.+|.+|...|... ...+..||+.+++-....+.+.....-+.+.++++||..--.++ ...+||+++ .+.+...+.+
T Consensus 54 ~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~-~~f~yd~~t--l~~~~~~~y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEG-TGFVYDPNT--LKKIGTFPYP 129 (264)
T ss_dssp ETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSS-EEEEEETTT--TEEEEEEE-S
T ss_pred CCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCC-eEEEEcccc--ceEEEEEecC
Confidence 5789999876443 44588999999987655554544444557889999999986654 889999985 6666654433
Q ss_pred cCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 343 LGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
..+.+++..++.|++--|.. .+...||.+
T Consensus 130 ------~EGWGLt~dg~~Li~SDGS~---~L~~~dP~~ 158 (264)
T PF05096_consen 130 ------GEGWGLTSDGKRLIMSDGSS---RLYFLDPET 158 (264)
T ss_dssp ------SS--EEEECSSCEEEE-SSS---EEEEE-TTT
T ss_pred ------CcceEEEcCCCEEEEECCcc---ceEEECCcc
Confidence 14678888888888877743 355666655
No 89
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.69 E-value=2.5 Score=41.81 Aligned_cols=184 Identities=11% Similarity=-0.028 Sum_probs=97.5
Q ss_pred CceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcce
Q 014222 130 GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFF 209 (428)
Q Consensus 130 ~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 209 (428)
+...++++|..+++-..+...+.. .......-+|.+|++....++ ..+++++|..+++-+.+..-.......
T Consensus 226 ~~~~l~~~dl~~g~~~~l~~~~g~----~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 297 (433)
T PRK04922 226 GRSAIYVQDLATGQRELVASFRGI----NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDTEP 297 (433)
T ss_pred CCcEEEEEECCCCCEEEeccCCCC----ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCccce
Confidence 345788899988887777654432 111122234545655433322 348999999998877664432111111
Q ss_pred eeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccce-EEEEECCE-EEEEecCCCCceeEEEEeCC
Q 014222 210 GSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF-IGVVYEGK-WFLKGLGSHRQVLSEAYQPE 286 (428)
Q Consensus 210 ~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~-~~~~~~g~-lyv~Gg~~~~~~~i~~yd~~ 286 (428)
...-++ +|++..... ....++.+|..+.+.+.+..-. .... ....-+|+ |++..+ ......++.+|+.
T Consensus 298 -~~spDG~~l~f~sd~~-----g~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~ 368 (433)
T PRK04922 298 -TWAPDGKSIYFTSDRG-----GRPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLS 368 (433)
T ss_pred -EECCCCCEEEEEECCC-----CCceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEEC-CCCceeEEEEECC
Confidence 112244 454443221 1247888999888877664211 1121 22223554 444433 2334468899999
Q ss_pred CCCeEecCCCCcCCCCCceEEECCeEEEEEcc--CCcEEEEEeCCCCc
Q 014222 287 TDSWFPVYDGMVAGWRNPSASLNRHLYALDCK--DGCKIRVYDEVTDS 332 (428)
Q Consensus 287 ~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~--~~~~i~~yd~~~~~ 332 (428)
++..+.+.... ........-+|+.+++... ....++.+|.+...
T Consensus 369 ~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 369 TGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 88888775421 1112233445654444322 22468888886543
No 90
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.67 E-value=1.5 Score=39.17 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=75.3
Q ss_pred eEEEEeCCCCceE-eCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee
Q 014222 133 SWHAFDPIYQLWQ-PLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS 211 (428)
Q Consensus 133 ~~~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 211 (428)
.+.+||..+++.. .+.... ..-.++....++.+++.|+.+ ..+.+||..+.+-...-. .....-..+
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~-~~~~~i~~~ 141 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHT-----SYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTLR-GHTDWVNSV 141 (289)
T ss_pred eEEEEEcCcccceEEEeccC-----CcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEec-cCCCcEEEE
Confidence 6778888764321 111111 112233333332566665522 368889987554322111 011111122
Q ss_pred EEEC-CEEEEEccccCCCCCCCCeEEEEeCCCCce-EEcCCCCCCccceEEEE-ECCEEEEEecCCCCceeEEEEeCCCC
Q 014222 212 CVIN-NCLYVAGGENGGVHRSLRSAEVYDPNKNRW-SFISDMSTAMVPFIGVV-YEGKWFLKGLGSHRQVLSEAYQPETD 288 (428)
Q Consensus 212 ~~~~-~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~~~~~~~~~-~~g~lyv~Gg~~~~~~~i~~yd~~~~ 288 (428)
.... +.+++.|+.+ ..+.+||..+.+- ..+.. ... .-..+.. -+++.+++++. ...+..||..+.
T Consensus 142 ~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~ 209 (289)
T cd00200 142 AFSPDGTFVASSSQD-------GTIKLWDLRTGKCVATLTG-HTG-EVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTG 209 (289)
T ss_pred EEcCcCCEEEEEcCC-------CcEEEEEccccccceeEec-Ccc-ccceEEECCCcCEEEEecC---CCcEEEEECCCC
Confidence 2333 4444444322 4688899875432 11111 111 1112222 24434445443 224678888765
Q ss_pred CeEecCCCCcCCCCCceEEE-CCeEEEEEccCCcEEEEEeCCCC
Q 014222 289 SWFPVYDGMVAGWRNPSASL-NRHLYALDCKDGCKIRVYDEVTD 331 (428)
Q Consensus 289 ~W~~~~~~~~~~~~~~~~~~-~~~lyv~gG~~~~~i~~yd~~~~ 331 (428)
+-...-.... ..-...+.. ++.+++.++.+ ..+.+||..+.
T Consensus 210 ~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~i~i~~~~~~ 251 (289)
T cd00200 210 KCLGTLRGHE-NGVNSVAFSPDGYLLASGSED-GTIRVWDLRTG 251 (289)
T ss_pred ceecchhhcC-CceEEEEEcCCCcEEEEEcCC-CcEEEEEcCCc
Confidence 4332211011 111112222 34555555433 47999998753
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.67 E-value=1.5 Score=39.17 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=78.3
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEE-CCEEEEEccccCCCCCCCCeEEEEeCCCCceEE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVI-NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSF 247 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~ 247 (428)
.++++|+.+ ..+.+||..+++-........... ..+... +++.+++++.+ ..+.+||..+.+-..
T Consensus 22 ~~l~~~~~~------g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~-------~~i~i~~~~~~~~~~ 87 (289)
T cd00200 22 KLLATGSGD------GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSSD-------KTIRLWDLETGECVR 87 (289)
T ss_pred CEEEEeecC------cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcCC-------CeEEEEEcCcccceE
Confidence 466666543 367778876654211111111111 122222 34455555543 578889988753221
Q ss_pred cCCCCCCccceEEEEE-CCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceE-EEC-CeEEEEEccCCcEEE
Q 014222 248 ISDMSTAMVPFIGVVY-EGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSA-SLN-RHLYALDCKDGCKIR 324 (428)
Q Consensus 248 ~~~~p~~~~~~~~~~~-~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~-~~lyv~gG~~~~~i~ 324 (428)
.-..... ........ ++.+++.++.. ..+..||..+.+-...-. ........+ ... +.+++.+. ....+.
T Consensus 88 ~~~~~~~-~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~~i~ 160 (289)
T cd00200 88 TLTGHTS-YVSSVAFSPDGRILSSSSRD---KTIKVWDVETGKCLTTLR--GHTDWVNSVAFSPDGTFVASSS-QDGTIK 160 (289)
T ss_pred EEeccCC-cEEEEEEcCCCCEEEEecCC---CeEEEEECCCcEEEEEec--cCCCcEEEEEEcCcCCEEEEEc-CCCcEE
Confidence 1111111 11112222 34555555422 246788887544222211 011111122 223 45544444 334799
Q ss_pred EEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 325 VYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 325 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+||..+.+- +..+....... .......+++.+++++.. ..+.+||..+
T Consensus 161 i~d~~~~~~--~~~~~~~~~~i----~~~~~~~~~~~l~~~~~~--~~i~i~d~~~ 208 (289)
T cd00200 161 LWDLRTGKC--VATLTGHTGEV----NSVAFSPDGEKLLSSSSD--GTIKLWDLST 208 (289)
T ss_pred EEEcccccc--ceeEecCcccc----ceEEECCCcCEEEEecCC--CcEEEEECCC
Confidence 999874432 11111111011 122233344455555542 3466788765
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.50 E-value=1.5 Score=42.34 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=104.4
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCcee
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWH 197 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 197 (428)
++.|+..|.+ ...+.+||..+.. .|-.+.....+...-.....++ .+++.|+-+. .+-.+|..+..-.
T Consensus 79 DG~LlaaGD~---sG~V~vfD~k~r~--iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~------v~k~~d~s~a~v~ 146 (487)
T KOG0310|consen 79 DGRLLAAGDE---SGHVKVFDMKSRV--ILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDK------VVKYWDLSTAYVQ 146 (487)
T ss_pred CCeEEEccCC---cCcEEEeccccHH--HHHHHhhccCceeEEEecccCC-eEEEecCCCc------eEEEEEcCCcEEE
Confidence 5778887732 2367889944421 1111111100000111122345 7888876432 2333444443311
Q ss_pred -eCC-CCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEE-CCEEEEEecCC
Q 014222 198 -RAP-DMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVY-EGKWFLKGLGS 274 (428)
Q Consensus 198 -~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~g~lyv~Gg~~ 274 (428)
.+. .-..-|. .+....+++|++.||++ ..+-.||..+.+ ..+-.+.....--.+..+ +|.+.+..|++
T Consensus 147 ~~l~~htDYVR~-g~~~~~~~hivvtGsYD-------g~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 147 AELSGHTDYVRC-GDISPANDHIVVTGSYD-------GKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred EEecCCcceeEe-eccccCCCeEEEecCCC-------ceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 111 1111222 12334577899999997 478889998874 223222222211223333 44555553322
Q ss_pred CCceeEEEEeCCCCCeEecCCCCcCCCCCceEE--ECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccce
Q 014222 275 HRQVLSEAYQPETDSWFPVYDGMVAGWRNPSAS--LNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAA 352 (428)
Q Consensus 275 ~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 352 (428)
.+-++|..++.=. +..+..-.....+.. -++.-.+.||.++ .+-+|| +..|+.+-.+..+.+.- .
T Consensus 218 ----~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-~VKVfd--~t~~Kvv~s~~~~~pvL-----s 284 (487)
T KOG0310|consen 218 ----SVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDR-HVKVFD--TTNYKVVHSWKYPGPVL-----S 284 (487)
T ss_pred ----eEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeeccccc-ceEEEE--ccceEEEEeeeccccee-----e
Confidence 3557777644311 111110000011111 2445556667775 799999 55677776654333222 3
Q ss_pred EEEEeCCeEEEEeCCCeE
Q 014222 353 ALVPLNGKLCIIRNNMSI 370 (428)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~ 370 (428)
..+..++.-.++|..++.
T Consensus 285 iavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EEecCCCceEEEecccce
Confidence 344557777777776553
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.49 E-value=0.45 Score=45.45 Aligned_cols=183 Identities=13% Similarity=0.032 Sum_probs=99.9
Q ss_pred EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccce--EEEEECCE-EEEEecCCCCceeEEEEeCCCCCeEec
Q 014222 217 CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF--IGVVYEGK-WFLKGLGSHRQVLSEAYQPETDSWFPV 293 (428)
Q Consensus 217 ~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~--~~~~~~g~-lyv~Gg~~~~~~~i~~yd~~~~~W~~~ 293 (428)
.+.+.+|.+. .-.++..|-+++. .+..+....... +...-+|. ..+.+|. ...++.||+.+.+-+++
T Consensus 226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLETAKVTKL 295 (514)
T ss_pred ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccccccccc
Confidence 4666677641 2344455555554 343333222221 12222555 4444443 34579999999999988
Q ss_pred CCCCcCC---CCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeE
Q 014222 294 YDGMVAG---WRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSI 370 (428)
Q Consensus 294 ~~~~~~~---~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 370 (428)
..+-... .....+..++.+.++.|..+ .|......+++|-.--.++ +.. ........+.+|++.||..
T Consensus 296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~eli~s~Kie---G~v---~~~~fsSdsk~l~~~~~~G-- 366 (514)
T KOG2055|consen 296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTKELITSFKIE---GVV---SDFTFSSDSKELLASGGTG-- 366 (514)
T ss_pred cCCCCcccchhheeEecCCCCeEEEcccCc-eEEeehhhhhhhhheeeec---cEE---eeEEEecCCcEEEEEcCCc--
Confidence 7532211 12223556677777777765 7889999999886533322 111 1233345556777777765
Q ss_pred EEEEeecCCCCCCCccccccceeccCCccccc-hhhhhhhhhcccccceeeEe
Q 014222 371 SLVDVSKSNGERGASAEHLWETISGKGQFKTL-VTNLWSSIAGRNRLKSHIVH 422 (428)
Q Consensus 371 ~~v~~yd~~~~~~~~~~~~W~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~ 422 (428)
.|+++|+..+ ..-.+|..-++...-... -.+.-....|+..|.+.|+.
T Consensus 367 -eV~v~nl~~~---~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 367 -EVYVWNLRQN---SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -eEEEEecCCc---ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 5889999883 222556654444221111 01111223367788888885
No 94
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.48 E-value=2.8 Score=41.01 Aligned_cols=183 Identities=9% Similarity=-0.075 Sum_probs=95.2
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccEEEE-EeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcce
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAV-LSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFF 209 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 209 (428)
...++++|..+++-..+...... ..+.+. -++..|++....+ ...+++.+|..++..+.+..........
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~-----~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGM-----NGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGPGIDTEP 283 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCC-----ccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCCCCCCCE
Confidence 35788899988876666543321 112222 2443465553322 2347999999988877765433211111
Q ss_pred eeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCC
Q 014222 210 GSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETD 288 (428)
Q Consensus 210 ~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~ 288 (428)
. ..-++ +|++..... ....++.+|..+..+..+...... .......-+|+.+++.........++.+|+.+.
T Consensus 284 ~-~s~dg~~l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 284 S-WSPDGKSIAFTSDRG-----GSPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred E-ECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 1 11244 455443221 124789999988887766432211 111223336666555443334456899999887
Q ss_pred CeEecCCCCcCCCCCceEEECCe-EEEEEccCC-cEEEEEeCCCC
Q 014222 289 SWFPVYDGMVAGWRNPSASLNRH-LYALDCKDG-CKIRVYDEVTD 331 (428)
Q Consensus 289 ~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~-~~i~~yd~~~~ 331 (428)
.++.+.... ....+...-+++ |++..-..+ ..+++++.+.+
T Consensus 357 ~~~~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 357 GERVLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CeEEccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 777665321 112223333444 444432222 34666665543
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.47 E-value=1.1 Score=42.25 Aligned_cols=137 Identities=9% Similarity=-0.021 Sum_probs=78.3
Q ss_pred CeEEEEeCCCC-----ceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC-eEecCCCCcCCCCCceE
Q 014222 233 RSAEVYDPNKN-----RWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS-WFPVYDGMVAGWRNPSA 306 (428)
Q Consensus 233 ~~v~~yd~~t~-----~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~ 306 (428)
..+.+|+.... +.+.+......-.-.+.+.++|+|.+..|. .+..|+...++ +...+............
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~-----~l~v~~l~~~~~l~~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN-----KLYVYDLDNSKTLLKKAFYDSPFYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT-----EEEEEEEETTSSEEEEEEE-BSSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC-----EEEEEEccCcccchhhheecceEEEEEEe
Confidence 56889988885 555554333333345667779996555442 46677777776 77776532222222345
Q ss_pred EECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEe-CCeEEEEeCCCeEEEEEeecCCC
Q 014222 307 SLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPL-NGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 307 ~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+.++.|++..-..+-.+..|+.+.++-..++.-..+. . ..++..+ ++..++.+-..+.-.+..|++..
T Consensus 137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~--~----v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~ 205 (321)
T PF03178_consen 137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR--W----VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEI 205 (321)
T ss_dssp EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B--E----EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-
T ss_pred ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc--c----EEEEEEecCCcEEEEEcCCCeEEEEEECCCC
Confidence 6788777766666656788899777777776532221 1 1333333 54555544445555567777654
No 96
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.37 E-value=2.7 Score=40.14 Aligned_cols=251 Identities=15% Similarity=0.126 Sum_probs=122.6
Q ss_pred ccceEEEEeeC--CCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEE-EeCCEEEEEeeeCCCCCCCceEEEEECCC
Q 014222 117 AEEWIYVIKRD--REGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAV-LSGCHLYLFGGKDPLKGSMRRVIFYSART 193 (428)
Q Consensus 117 ~~~~l~v~gg~--~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 193 (428)
.+..||+.... ..+.-..+..++.+++...+...+.. ...-..+++ -++..||+.- + ....+.+|+...
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~--g~~p~~i~~~~~g~~l~van-y-----~~g~v~v~~l~~ 118 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG--GSSPCHIAVDPDGRFLYVAN-Y-----GGGSVSVFPLDD 118 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES--SSCEEEEEECTTSSEEEEEE-T-----TTTEEEEEEECT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC--CCCcEEEEEecCCCEEEEEE-c-----cCCeEEEEEccC
Confidence 46788998753 23344556666666777776554421 011122333 2444566652 1 133577777765
Q ss_pred C-ceeeCC---------CC---CcCCcceeeEEE-C-CEEEEEccccCCCCCCCCeEEEEeCCCCc--eEEcC--CCCCC
Q 014222 194 N-KWHRAP---------DM---LRRRHFFGSCVI-N-NCLYVAGGENGGVHRSLRSAEVYDPNKNR--WSFIS--DMSTA 254 (428)
Q Consensus 194 ~-~W~~~~---------~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~--~~p~~ 254 (428)
+ +-.... +- ...-..|.+..- + ..+|+..= ..+.+.+|+...+. ..... .++..
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-------CCCEEEEEEEeCCCceEEEeeccccccC
Confidence 4 211110 00 112223444443 3 46777531 13688888887665 54422 22222
Q ss_pred cc-ceEEEEECC-EEEEEecCCCCceeEEEEeCCCCCeEecCC---CCcCC--CCCc-eEEE---CCeEEEEEccCCcEE
Q 014222 255 MV-PFIGVVYEG-KWFLKGLGSHRQVLSEAYQPETDSWFPVYD---GMVAG--WRNP-SASL---NRHLYALDCKDGCKI 323 (428)
Q Consensus 255 ~~-~~~~~~~~g-~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~---~~~~~--~~~~-~~~~---~~~lyv~gG~~~~~i 323 (428)
-. .|.+..-++ .+||..- ......++.|+..+..++.+.. .+... ...+ .+.+ +..||+.... .+.|
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI 269 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSI 269 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEE
T ss_pred CCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEE
Confidence 11 233333344 6788753 3334445666666777765432 21111 1112 2222 3457776533 4578
Q ss_pred EEEeC--CCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCCCCCCccccccceec
Q 014222 324 RVYDE--VTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNGERGASAEHLWETIS 394 (428)
Q Consensus 324 ~~yd~--~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~~ 394 (428)
.+|+. ++.+.+.+...+..-..+| ..++...++.||+.+.....-.++..|.++ ..++.+.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr---~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t-------G~l~~~~ 332 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPR---HFAFSPDGRYLYVANQDSNTVSVFDIDPDT-------GKLTPVG 332 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEE---EEEE-TTSSEEEEEETTTTEEEEEEEETTT-------TEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCCCeEEEEEEeCCC-------CcEEEec
Confidence 78876 5567777665543222232 244444556677765554444444456666 6666654
No 97
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.15 E-value=3.1 Score=39.67 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=106.9
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS 211 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 211 (428)
-..+.||..++++..+...... ....+-...-.+..||+....... ...-..+..+..+.+.+.+...+.......-
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~--~~Ps~l~~~~~~~~LY~~~e~~~~-~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEG--ENPSWLAVSPDGRRLYVVNEGSGD-SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEES--SSECCEEE-TTSSEEEEEETTSST-TTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred EEEEEEcCCCCCceEeeeecCC--CCCceEEEEeCCCEEEEEEccccC-CCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 4677788899999877542221 111232222355589988543201 1122344455555677777665533333232
Q ss_pred EEE---CCEEEEEccccCCCCCCCCeEEEEeCCCC-ceEEcC---------CCC---CCccceEEEEE-C-CEEEEEecC
Q 014222 212 CVI---NNCLYVAGGENGGVHRSLRSAEVYDPNKN-RWSFIS---------DMS---TAMVPFIGVVY-E-GKWFLKGLG 273 (428)
Q Consensus 212 ~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~t~-~W~~~~---------~~p---~~~~~~~~~~~-~-g~lyv~Gg~ 273 (428)
..+ +..||+.- +. ...+.+|+...+ .=.... +-+ .....|.+... + ..+|+..-.
T Consensus 92 i~~~~~g~~l~van-y~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 92 IAVDPDGRFLYVAN-YG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp EEECTTSSEEEEEE-TT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred EEEecCCCEEEEEE-cc------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 333 34566642 22 257788877764 111110 111 11222444444 3 357776422
Q ss_pred CCCceeEEEEeCCCCC--eEecCCC-CcCCCCCc-eEEE--CCeEEEEEccCCcEEEEEeCC--CCceeeCcccccccCC
Q 014222 274 SHRQVLSEAYQPETDS--WFPVYDG-MVAGWRNP-SASL--NRHLYALDCKDGCKIRVYDEV--TDSWSKHIDSKMHLGN 345 (428)
Q Consensus 274 ~~~~~~i~~yd~~~~~--W~~~~~~-~~~~~~~~-~~~~--~~~lyv~gG~~~~~i~~yd~~--~~~W~~v~~~~~~~~~ 345 (428)
...+..|+...+. .+..... .+.+...- ++.. +..+|++...+ +.|.+|+.. +..++.+...+.....
T Consensus 165 ---~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 165 ---ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-NTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp ---TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred ---CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-CcEEEEeecccCCceeEEEEeeecccc
Confidence 2245666665544 6543221 11121111 2222 35788988655 466666554 6677766543311111
Q ss_pred cccc-cceEEEEe--CCeEEEEeCCCeEEEEEeecC
Q 014222 346 SRAL-EAAALVPL--NGKLCIIRNNMSISLVDVSKS 378 (428)
Q Consensus 346 ~~~~-~~~~~~~~--~~~lyv~GG~~~~~~v~~yd~ 378 (428)
.... ..+.+... +..||+..... +.|.+|+.
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~ 274 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDL 274 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccC--CEEEEEEE
Confidence 1000 12333333 45678865433 33556665
No 98
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.11 E-value=3.8 Score=40.41 Aligned_cols=184 Identities=8% Similarity=-0.082 Sum_probs=90.0
Q ss_pred CceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE
Q 014222 183 MRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~ 262 (428)
...+++.|......+.+......-... ...-+++.+++.... .....++.+|..+.+=..+...+.. .......
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s~~----~~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~S 248 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVSFE----SKKPVVYVHDLATGRRRVVANFKGS-NSAPAWS 248 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEEcc----CCCcEEEEEECCCCCEEEeecCCCC-ccceEEC
Confidence 457888887655444443222111111 112244433333322 1135789999988765555443321 1122333
Q ss_pred ECCE-EEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCe-EEEEEccC-CcEEEEEeCCCCceeeCccc
Q 014222 263 YEGK-WFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRH-LYALDCKD-GCKIRVYDEVTDSWSKHIDS 339 (428)
Q Consensus 263 ~~g~-lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~-~~~i~~yd~~~~~W~~v~~~ 339 (428)
-+|+ |++... ......++.+|........+.... .........-+|+ |++..... ...+|.+|..+...+.+...
T Consensus 249 PDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~ 326 (427)
T PRK02889 249 PDGRTLAVALS-RDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT 326 (427)
T ss_pred CCCCEEEEEEc-cCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC
Confidence 3554 443322 223445888898877766665421 1111222233454 55443222 24688888887776665421
Q ss_pred ccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 340 KMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
. . .. ...+....++.|+..........+.++|..+
T Consensus 327 g-~--~~---~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 327 G-S--YN---TSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred C-C--Cc---CceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 1 0 00 1123323345555555444445688899877
No 99
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.01 E-value=0.89 Score=36.43 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=56.5
Q ss_pred EEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCC---CCCccceEEEEECCEEEEEecCCCCc---eeEEEE-e
Q 014222 212 CVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDM---STAMVPFIGVVYEGKWFLKGLGSHRQ---VLSEAY-Q 284 (428)
Q Consensus 212 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~~~~~~~~~~~g~lyv~Gg~~~~~---~~i~~y-d 284 (428)
+.++|.+|.+.... ......+.+||..+++|+.++.+ .........+.++|+|-++....... ..+++. |
T Consensus 2 icinGvly~~a~~~---~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 2 ICINGVLYWLAWSE---DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred EEECcEEEeEEEEC---CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 45789999887762 33457899999999999988653 23445567888999998876543322 446665 5
Q ss_pred CCCCCeEecC
Q 014222 285 PETDSWFPVY 294 (428)
Q Consensus 285 ~~~~~W~~~~ 294 (428)
..+.+|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6678999764
No 100
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.98 E-value=4 Score=40.07 Aligned_cols=179 Identities=11% Similarity=0.014 Sum_probs=99.6
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcceeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHFFGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~ 262 (428)
.++|++|..+++=+.+...+.... .....-+| +|.+.-... ....++.+|..+..++.+...+.. .......
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGI-DVNGNFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCc-cCccEEC
Confidence 489999998887666654321111 11122244 555543322 136899999999999888654431 1111223
Q ss_pred ECC-EEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCe-EEEEEccC------C-cEEEEEeCCCCce
Q 014222 263 YEG-KWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRH-LYALDCKD------G-CKIRVYDEVTDSW 333 (428)
Q Consensus 263 ~~g-~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~------~-~~i~~yd~~~~~W 333 (428)
-+| +||+.... .....++.+|..+++.+++... +.......-+|+ |..+.... + ..|+++|+++..+
T Consensus 286 PDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~rlt~~---g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 286 EDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQVVFH---GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCeEeCccC---CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 345 56655322 2234589999999888777532 111223333444 43333221 1 4799999999999
Q ss_pred eeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 334 SKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 334 ~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+.+...... ........+..|+..........+...+.+.
T Consensus 362 ~~LT~~~~~-------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 362 RRLTANGVN-------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EECCCCCCc-------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 888653211 1133333344455555444455677787766
No 101
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.95 E-value=2.6 Score=38.08 Aligned_cols=78 Identities=22% Similarity=0.412 Sum_probs=53.8
Q ss_pred CCCCCCCCccccccEEEEEe--C-CEEEEEeeeCCC-------------CCCCceEEEEECCCCcee--eCCCCCcCCcc
Q 014222 147 LPPIPKEYSEALGFGCAVLS--G-CHLYLFGGKDPL-------------KGSMRRVIFYSARTNKWH--RAPDMLRRRHF 208 (428)
Q Consensus 147 l~~~~~~~~~r~~~~~~~~~--~-~~lyv~GG~~~~-------------~~~~~~v~~yd~~t~~W~--~~~~~~~~r~~ 208 (428)
+..+|.. |++|++.+.. | .-+.+|||+.-- -.....|+..|..-+-.+ .+|.+....+.
T Consensus 81 vGdvP~a---RYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF 157 (337)
T PF03089_consen 81 VGDVPEA---RYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF 157 (337)
T ss_pred cCCCCcc---cccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEE
Confidence 3455654 8999876652 3 247788986421 013456888888776543 46777778888
Q ss_pred eeeEEECCEEEEEccccCC
Q 014222 209 FGSCVINNCLYVAGGENGG 227 (428)
Q Consensus 209 ~~~~~~~~~iyv~GG~~~~ 227 (428)
|.+..-++.+|++||....
T Consensus 158 Hvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 158 HVSLARNDCVYILGGHSLE 176 (337)
T ss_pred EEEEecCceEEEEccEEcc
Confidence 8888889999999998643
No 102
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.93 E-value=7.6 Score=43.01 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=122.4
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCC---------CccccccEEEEEe-CCEEEEEeeeCCCCCCCceEE
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKE---------YSEALGFGCAVLS-GCHLYLFGGKDPLKGSMRRVI 187 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~---------~~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 187 (428)
++.|||.. .+.+.+.++|+....-..+...... -....-+++++.. ++.|||.... ...+.
T Consensus 579 ~g~lyVaD---s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------n~~Ir 649 (1057)
T PLN02919 579 NNRLFISD---SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------NHALR 649 (1057)
T ss_pred CCeEEEEE---CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC------CceEE
Confidence 45566654 2335788898865533333221000 0001235666652 3368887432 23678
Q ss_pred EEECCCCceeeCCCC-------Cc--------CCcceeeEEE--CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCC
Q 014222 188 FYSARTNKWHRAPDM-------LR--------RRHFFGSCVI--NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISD 250 (428)
Q Consensus 188 ~yd~~t~~W~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~ 250 (428)
++|+.++.=+.+..- .. -..-..+++- ++.+|+.... .+.+.+||+.+.....+..
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEec
Confidence 888877665443210 00 0111233333 6789987543 2578889988776544321
Q ss_pred C----------CC--C-ccceEEEEE-C-CEEEEEecCCCCceeEEEEeCCCCCeEecCC--C-----C---c-------
Q 014222 251 M----------ST--A-MVPFIGVVY-E-GKWFLKGLGSHRQVLSEAYQPETDSWFPVYD--G-----M---V------- 298 (428)
Q Consensus 251 ~----------p~--~-~~~~~~~~~-~-g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~--~-----~---~------- 298 (428)
- .. . .....++.. + +.|||.... ...+.+||+.++..+.+.. . . .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECC---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 0 00 0 011122222 3 459988543 2357889988765332210 0 0 0
Q ss_pred -CCCCCc-e-E-EECCeEEEEEccCCcEEEEEeCCCCceeeCccccc-----------ccCCcccccceEEEEeCCeEEE
Q 014222 299 -AGWRNP-S-A-SLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKM-----------HLGNSRALEAAALVPLNGKLCI 363 (428)
Q Consensus 299 -~~~~~~-~-~-~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~lyv 363 (428)
....++ . + .-+|.|||....+ ..|.+||++++....+..... ....+ ...++.-+|+|||
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P----~GIavd~dG~lyV 874 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP----AGLALGENGRLFV 874 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc----eEEEEeCCCCEEE
Confidence 001122 2 2 3467899998654 589999999888776543211 01111 1223345678999
Q ss_pred EeCCCeEEEEEeecCCC
Q 014222 364 IRNNMSISLVDVSKSNG 380 (428)
Q Consensus 364 ~GG~~~~~~v~~yd~~~ 380 (428)
....+ +.|.++|..+
T Consensus 875 aDt~N--n~Irvid~~~ 889 (1057)
T PLN02919 875 ADTNN--SLIRYLDLNK 889 (1057)
T ss_pred EECCC--CEEEEEECCC
Confidence 85433 3577888877
No 103
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.56 E-value=5.2 Score=39.33 Aligned_cols=188 Identities=6% Similarity=-0.076 Sum_probs=104.9
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
...++++|..+++=+.+...+.. ......+-+|.+|.+.-... ...++|++|..++.++.+...+..-....
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~----~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~ 283 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM----LVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYPGIDVNGN 283 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc----EEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCCCccCccE
Confidence 45899999999887777653321 11122233554566554332 24589999999999998865543111111
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEE-ecCCC-----CceeEEEEe
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLK-GLGSH-----RQVLSEAYQ 284 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~-Gg~~~-----~~~~i~~yd 284 (428)
..--+.+||+..... ....++++|..+.+.+.+..-.. .. ....-+|+..++ ..... ....++.+|
T Consensus 284 ~SPDG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 284 FVEDDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred ECCCCCEEEEEECCC-----CCceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 112244677765432 13589999999988876653211 22 233345553333 22211 224588999
Q ss_pred CCCCCeEecCCCCcCCCCCceEEECCe-EEEEEccCC-cEEEEEeCCCCceeeC
Q 014222 285 PETDSWFPVYDGMVAGWRNPSASLNRH-LYALDCKDG-CKIRVYDEVTDSWSKH 336 (428)
Q Consensus 285 ~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~-~~i~~yd~~~~~W~~v 336 (428)
+.++.++.+.... ....+...-+|+ |++.....+ ..++.++.+.+.=..+
T Consensus 356 ~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 356 TNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9999998887531 112233344555 444433222 3577778776543333
No 104
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.51 E-value=4.1 Score=37.93 Aligned_cols=220 Identities=10% Similarity=0.116 Sum_probs=100.5
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCC-CCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCce
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPI-PKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKW 196 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~-~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 196 (428)
++..++.|... .+..-.-.-.+|.+++.. +.+ ...+.+..++...+.++|.. ..+++-.-.-.+|
T Consensus 71 ~~~g~ivG~~g----~ll~T~DgG~tW~~v~l~~~lp---gs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW 136 (302)
T PF14870_consen 71 GNEGWIVGEPG----LLLHTTDGGKTWERVPLSSKLP---GSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTW 136 (302)
T ss_dssp TTEEEEEEETT----EEEEESSTTSS-EE----TT-S---S-EEEEEEEETTEEEEEETT---------EEEESSTTSSE
T ss_pred CCceEEEcCCc----eEEEecCCCCCcEEeecCCCCC---CCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCe
Confidence 44556666321 344444556789998621 222 22355666666567776532 2455544455689
Q ss_pred eeCCCCCcCCcceeeE-EECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCC
Q 014222 197 HRAPDMLRRRHFFGSC-VINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSH 275 (428)
Q Consensus 197 ~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~ 275 (428)
+.+..-.. ..-..+. .-++++++++... +-....|+....|+...-....|.......-++.|++++-.
T Consensus 137 ~~~~~~~~-gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~G-- 206 (302)
T PF14870_consen 137 QAVVSETS-GSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARG-- 206 (302)
T ss_dssp EEEE-S-----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETT--
T ss_pred eEcccCCc-ceeEeEEECCCCcEEEEECcc-------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCC--
Confidence 87643222 1111222 2356766666442 34567799999998876554444444445557888887411
Q ss_pred CceeEEEEe--CCCCCeEecCCCCcCCCC-Cc-eE-EECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCccccc
Q 014222 276 RQVLSEAYQ--PETDSWFPVYDGMVAGWR-NP-SA-SLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALE 350 (428)
Q Consensus 276 ~~~~i~~yd--~~~~~W~~~~~~~~~~~~-~~-~~-~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~ 350 (428)
.. +..=| ...++|++...+...... .. ++ .-++.+++.||.. .+++=.=.-++|++...... .+.. .
T Consensus 207 g~--~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G--~l~~S~DgGktW~~~~~~~~-~~~n---~ 278 (302)
T PF14870_consen 207 GQ--IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG--TLLVSTDGGKTWQKDRVGEN-VPSN---L 278 (302)
T ss_dssp TE--EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTT-SSS-----
T ss_pred cE--EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc--cEEEeCCCCccceECccccC-CCCc---e
Confidence 11 22223 345678874332222222 12 22 2368899998854 46555566779999864321 1111 1
Q ss_pred ceEEEEeCCeEEEEeCCCe
Q 014222 351 AAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~ 369 (428)
....+...++-|++|...-
T Consensus 279 ~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp -EEEEEETTEEEEE-STTE
T ss_pred EEEEEcCCCceEEECCCcE
Confidence 2344556689999987643
No 105
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.50 E-value=5.4 Score=39.31 Aligned_cols=226 Identities=13% Similarity=0.012 Sum_probs=108.4
Q ss_pred CceeEEEEeCCCCceEeCCCCCCCCccccccEEE-EEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcc
Q 014222 130 GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCA-VLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHF 208 (428)
Q Consensus 130 ~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~ 208 (428)
+...++.+|........+...... ..+.+ +-+|.+|+.. .... ....++++|..+++=..+...+....
T Consensus 174 ~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~-s~~~---~~~~I~~~dl~~g~~~~l~~~~g~~~- 243 (427)
T PRK02889 174 NRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYV-SFES---KKPVVYVHDLATGRRRVVANFKGSNS- 243 (427)
T ss_pred CccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEE-EccC---CCcEEEEEECCCCCEEEeecCCCCcc-
Confidence 345788888765444444322221 11222 2344344433 2221 23579999998887555544332111
Q ss_pred eeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCC
Q 014222 209 FGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 209 ~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
.....-++ +|++....+ ....++.+|..+...+.+..-.. ........-+|+..++.........++.+|..+
T Consensus 244 ~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 244 APAWSPDGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred ceEECCCCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 11122244 555543322 13578888988777666543221 111122334665333333322334578888877
Q ss_pred CCeEecCCCCcCCCCCceEEECCe-EEEEEccCC-cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCe-EEEE
Q 014222 288 DSWFPVYDGMVAGWRNPSASLNRH-LYALDCKDG-CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGK-LCII 364 (428)
Q Consensus 288 ~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~-~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~-lyv~ 364 (428)
+..+.+... ......+...-+|+ |+......+ ..|+++|..+.+...+..-. .. .... ...+++ |+..
T Consensus 318 g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~-----~~p~-~spdg~~l~~~ 388 (427)
T PRK02889 318 GAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RD-----ESPS-FAPNGRYILYA 388 (427)
T ss_pred CceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--Cc-----cCce-ECCCCCEEEEE
Confidence 777666421 11111122233444 444433222 36999999988877664311 10 1122 333444 4444
Q ss_pred eCCCeEEEEEeecCCC
Q 014222 365 RNNMSISLVDVSKSNG 380 (428)
Q Consensus 365 GG~~~~~~v~~yd~~~ 380 (428)
........+++.+...
T Consensus 389 ~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 389 TQQGGRSVLAAVSSDG 404 (427)
T ss_pred EecCCCEEEEEEECCC
Confidence 3333344566666644
No 106
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.37 E-value=5.3 Score=38.71 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=85.2
Q ss_pred cCChhHHHHHhhCcccceEEEEeeCCCCceeEEEEeCCCCceEeCCC-CCCCCc---c------ccccEEEEEeCCEEEE
Q 014222 103 SGNFYYSLRKSLGIAEEWIYVIKRDREGKISWHAFDPIYQLWQPLPP-IPKEYS---E------ALGFGCAVLSGCHLYL 172 (428)
Q Consensus 103 ~~~~f~~~r~~~~~~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~-~~~~~~---~------r~~~~~~~~~~~~lyv 172 (428)
....|..-..++..+++.=.||-. ..+++.|||.+++-++|.- +|.... + ...--.+..+| ..++
T Consensus 262 rHTnFtdYY~R~~nsDGkrIvFq~----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~G-d~ia 336 (668)
T COG4946 262 RHTNFTDYYPRNANSDGKRIVFQN----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG-DYIA 336 (668)
T ss_pred hcCCchhccccccCCCCcEEEEec----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCC-cEEE
Confidence 334444444455555554445432 1279999999999887632 122100 0 00011234455 3443
Q ss_pred EeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCC
Q 014222 173 FGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMS 252 (428)
Q Consensus 173 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 252 (428)
+- +...+++.++..+--.+++.-..-| +.-...+++-.++|-.+. +.+.+||..+..-..+...
T Consensus 337 ~V-------SRGkaFi~~~~~~~~iqv~~~~~Vr--Y~r~~~~~e~~vigt~dg------D~l~iyd~~~~e~kr~e~~- 400 (668)
T COG4946 337 LV-------SRGKAFIMRPWDGYSIQVGKKGGVR--YRRIQVDPEGDVIGTNDG------DKLGIYDKDGGEVKRIEKD- 400 (668)
T ss_pred EE-------ecCcEEEECCCCCeeEEcCCCCceE--EEEEccCCcceEEeccCC------ceEEEEecCCceEEEeeCC-
Confidence 31 1225667666554444444322222 222333445667766542 5899999999886665432
Q ss_pred CCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecC
Q 014222 253 TAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVY 294 (428)
Q Consensus 253 ~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~ 294 (428)
.+......+.-+|+..+++-. ...++.+|.+++.=+.+.
T Consensus 401 lg~I~av~vs~dGK~~vvaNd---r~el~vididngnv~~id 439 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNGNVRLID 439 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCCCeeEec
Confidence 122222233346665555422 334677888777755553
No 107
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.31 E-value=6 Score=39.04 Aligned_cols=189 Identities=10% Similarity=-0.017 Sum_probs=97.0
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
...++.+|..+++-..+...+.. ...-..+-+|.+|++..... ...+++++|..+++.+.+..-.......
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~----~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~~~~lt~~~~~~~~~- 292 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRH----NGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRSNNTEP- 292 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCC----cCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEccCCCCCcCce-
Confidence 34677888877776666554432 11112233454566553322 1346999999998887775433211111
Q ss_pred eEEECCE-EEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC
Q 014222 211 SCVINNC-LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS 289 (428)
Q Consensus 211 ~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~ 289 (428)
...-+++ |+...... ....++.+|+.+..-+.+..... ........-+|+..++.........++.+|+.++.
T Consensus 293 ~wSPDG~~I~f~s~~~-----g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 293 TWFPDSQNLAYTSDQA-----GRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred EECCCCCEEEEEeCCC-----CCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 1122444 44433211 12478888988876665532211 11122223356544443322233458889999999
Q ss_pred eEecCCCCcCCCCCceEEECCeEEEEEccCC--cEEEEEeCCCCceeeC
Q 014222 290 WFPVYDGMVAGWRNPSASLNRHLYALDCKDG--CKIRVYDEVTDSWSKH 336 (428)
Q Consensus 290 W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~--~~i~~yd~~~~~W~~v 336 (428)
++.+.... ....+...-+|+..++...++ ..++..+.+...=..+
T Consensus 367 ~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 367 VQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred eEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 88876421 112233445666555554333 2466667654433333
No 108
>PTZ00421 coronin; Provisional
Probab=94.20 E-value=6.9 Score=39.33 Aligned_cols=151 Identities=10% Similarity=0.049 Sum_probs=72.5
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcc-eeeE-EECCEEEEEccccCCCCCCCCeEEEEeCCCCceE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHF-FGSC-VINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWS 246 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~ 246 (428)
.+++.||.+ ..+.+||..+++-... +...... .+++ .-++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~~~~~--l~~h~~~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~~v 203 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGKAVEV--IKCHSDQITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGTIV 203 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCeEEEE--EcCCCCceEEEEEECCCCEEEEecCC-------CEEEEEECCCCcEE
Confidence 477777654 2588899887653211 1111111 1122 2367777777764 57889999876421
Q ss_pred -EcCCCCCCccceEEEEEC-CEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEE--ECCeEEEEEccCC
Q 014222 247 -FISDMSTAMVPFIGVVYE-GKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSAS--LNRHLYALDCKDG 320 (428)
Q Consensus 247 -~~~~~p~~~~~~~~~~~~-g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~--~~~~lyv~gG~~~ 320 (428)
.+..-............+ +.|...|........+..||+.+.. ..... ........... -++.++++||...
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 111111111111111223 3444344332233457789986533 11111 00000011122 2566666666544
Q ss_pred cEEEEEeCCCCceeeC
Q 014222 321 CKIRVYDEVTDSWSKH 336 (428)
Q Consensus 321 ~~i~~yd~~~~~W~~v 336 (428)
..|.+||..++.....
T Consensus 282 g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 282 GNIRCFELMNERLTFC 297 (493)
T ss_pred CeEEEEEeeCCceEEE
Confidence 5799999887765443
No 109
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.024 Score=51.26 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=37.3
Q ss_pred CCCChHHHHHHhcccccCCccchhhhchHhHHhhhcCChh
Q 014222 68 LPGLPDDLAIACLIRVPRVEHCKLRLVCKRWHRLLSGNFY 107 (428)
Q Consensus 68 ~~~lpddl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~f 107 (428)
|-.||||+++.|+++++.+.+.+...|||+|..+.++...
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999999999999999999988753
No 110
>PRK10115 protease 2; Provisional
Probab=93.72 E-value=11 Score=39.81 Aligned_cols=250 Identities=8% Similarity=-0.031 Sum_probs=123.4
Q ss_pred ceEEEEeeCCCC--ceeEEEEeCCCCceEeCCCCCCCCccccccEEEEE-eCCEEEEEeeeCCCCCCCceEEEEECCCCc
Q 014222 119 EWIYVIKRDREG--KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVL-SGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195 (428)
Q Consensus 119 ~~l~v~gg~~~~--~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 195 (428)
+.+++++.+..+ ...+++.|+.++.. ++.... ....+++-. ++..+|.. ..+.......+++.++..|+.
T Consensus 138 g~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~----~~~~~~~w~~D~~~~~y~-~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 138 NTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLD----NVEPSFVWANDSWTFYYV-RKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred CCEEEEEecCCCcEEEEEEEEECCCCCC--CCcccc----CcceEEEEeeCCCEEEEE-EecCCCCCCCEEEEEECCCCh
Confidence 344455444322 34678888887641 221111 112334444 34234443 332211134689999998883
Q ss_pred ee--eCCCCCcCCcceeeEEE-CCEEEEEccccCCCCCCCCeEEEEeC--CCCceEEcCCCCCCccceEEEEECCEEEEE
Q 014222 196 WH--RAPDMLRRRHFFGSCVI-NNCLYVAGGENGGVHRSLRSAEVYDP--NKNRWSFISDMSTAMVPFIGVVYEGKWFLK 270 (428)
Q Consensus 196 W~--~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~ 270 (428)
-. .+-.-............ +++..++.... ...+.++.|+. .+..|..+-+.+.... ......++.+|+.
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~ 285 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS----ATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLR 285 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC----CccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEE
Confidence 22 12111111222222222 44433444432 22356788873 2344433322222211 2333456888988
Q ss_pred ecCCCCceeEEEEeCC-CCCeEecCCCCcCCCCCceEEECCeEEEEEccCC-cEEEEEeCCCCceeeCcccccccCCccc
Q 014222 271 GLGSHRQVLSEAYQPE-TDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG-CKIRVYDEVTDSWSKHIDSKMHLGNSRA 348 (428)
Q Consensus 271 Gg~~~~~~~i~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~-~~i~~yd~~~~~W~~v~~~~~~~~~~~~ 348 (428)
.-.......+...+.. .+.|+.+.+......-......++.|++..-.++ ..++++|..++....+.- +.+. .
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~--~-- 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPA--Y-- 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCc--e--
Confidence 5332333446677776 6789988653121111223456888888865444 468889887665554431 1010 0
Q ss_pred ccceEEE--E--e-CCeEE-EEeCCCeEEEEEeecCCCCCCCccccccceecc
Q 014222 349 LEAAALV--P--L-NGKLC-IIRNNMSISLVDVSKSNGERGASAEHLWETISG 395 (428)
Q Consensus 349 ~~~~~~~--~--~-~~~ly-v~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~~~ 395 (428)
.... . . ++.++ .+.+......++.||+.+ ..|+.+..
T Consensus 361 ---~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~-------~~~~~l~~ 403 (686)
T PRK10115 361 ---VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT-------GERRVLKQ 403 (686)
T ss_pred ---EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC-------CcEEEEEe
Confidence 1111 1 1 23344 345556667899999998 77777654
No 111
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.72 E-value=7.8 Score=38.24 Aligned_cols=239 Identities=11% Similarity=0.001 Sum_probs=117.0
Q ss_pred cceEEEEeeCC-CCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCce
Q 014222 118 EEWIYVIKRDR-EGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKW 196 (428)
Q Consensus 118 ~~~l~v~gg~~-~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 196 (428)
....|+..... .....+++.|.....=..+...... ...-..+-+|.+|.... ... ....++++|..+++-
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~----~~~p~wSPDG~~la~~s-~~~---g~~~i~i~dl~~G~~ 235 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQP----LMSPAWSPDGSKLAYVT-FES---GRSALVIQTLANGAV 235 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCc----eeeeEEcCCCCEEEEEE-ecC---CCcEEEEEECCCCCe
Confidence 34456654322 2245788888765433333221111 11112223443343332 211 235799999988877
Q ss_pred eeCCCCCcCCcceeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCC
Q 014222 197 HRAPDMLRRRHFFGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSH 275 (428)
Q Consensus 197 ~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~ 275 (428)
+.+...+..-... ...-+| +|++..... + ...++.+|..+.+.+.+....... ......-+|+..++.....
T Consensus 236 ~~l~~~~~~~~~~-~~SPDG~~La~~~~~~-g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 236 RQVASFPRHNGAP-AFSPDGSKLAFALSKT-G----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred EEccCCCCCcCCe-EECCCCCEEEEEEcCC-C----CcEEEEEECCCCCEEEccCCCCCc-CceEECCCCCEEEEEeCCC
Confidence 7666544322211 112244 565543321 1 246899999998877765432211 1122223565444433322
Q ss_pred CceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCe-EEEEEccCC-cEEEEEeCCCCceeeCcccccccCCcccccceE
Q 014222 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRH-LYALDCKDG-CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAA 353 (428)
Q Consensus 276 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~-~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~ 353 (428)
....++.+|+.+..-+.+... ..........-+|+ |++.+...+ ..++++|+++++++.+.... .. ....
T Consensus 309 g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~------~~p~ 380 (429)
T PRK03629 309 GRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LD------ETPS 380 (429)
T ss_pred CCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CC------CCce
Confidence 334578889888776666431 11111122233454 444443222 46899999999888776421 10 1122
Q ss_pred EEEeCCeEEEEeCC-CeEEEEEeecCCC
Q 014222 354 LVPLNGKLCIIRNN-MSISLVDVSKSNG 380 (428)
Q Consensus 354 ~~~~~~~lyv~GG~-~~~~~v~~yd~~~ 380 (428)
...+|+.+++.+. .....+++.+.+.
T Consensus 381 -~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 381 -IAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred -ECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3355655555443 2334566666654
No 112
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.55 E-value=15 Score=40.87 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=85.1
Q ss_pred cEEEEEe-CCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCC----------C---cCCcceeeEEE--CCEEEEEcc
Q 014222 160 FGCAVLS-GCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDM----------L---RRRHFFGSCVI--NNCLYVAGG 223 (428)
Q Consensus 160 ~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----------~---~~r~~~~~~~~--~~~iyv~GG 223 (428)
+.+++.. ++.+|+... ....+++||+.++.......- . .-..-.++++. ++.||+...
T Consensus 686 ~gVa~dp~~g~LyVad~------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs 759 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMA------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS 759 (1057)
T ss_pred eEEEEecCCCeEEEEEC------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC
Confidence 3455553 347888743 234688999877655432110 0 00111123332 345998755
Q ss_pred ccCCCCCCCCeEEEEeCCCCceEEcC--C--CCC--------------Cc--cceE-EEEECCEEEEEecCCCCceeEEE
Q 014222 224 ENGGVHRSLRSAEVYDPNKNRWSFIS--D--MST--------------AM--VPFI-GVVYEGKWFLKGLGSHRQVLSEA 282 (428)
Q Consensus 224 ~~~~~~~~~~~v~~yd~~t~~W~~~~--~--~p~--------------~~--~~~~-~~~~~g~lyv~Gg~~~~~~~i~~ 282 (428)
.+ +.+.+||+.+.....+. . .+. .. .... ++.-+|.+||.... ...|.+
T Consensus 760 ~n-------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~---N~rIrv 829 (1057)
T PLN02919 760 ES-------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY---NHKIKK 829 (1057)
T ss_pred CC-------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC---CCEEEE
Confidence 32 68999999876533221 0 000 00 0112 22346789998543 335789
Q ss_pred EeCCCCCeEecCCCCc----------CCCCCc-eE--EECCeEEEEEccCCcEEEEEeCCCCc
Q 014222 283 YQPETDSWFPVYDGMV----------AGWRNP-SA--SLNRHLYALDCKDGCKIRVYDEVTDS 332 (428)
Q Consensus 283 yd~~~~~W~~~~~~~~----------~~~~~~-~~--~~~~~lyv~gG~~~~~i~~yd~~~~~ 332 (428)
||+.++....+..... .....+ .+ .-+|+|||....+ +.|.++|.++++
T Consensus 830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-n~Irvid~~~~~ 891 (1057)
T PLN02919 830 LDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-SLIRYLDLNKGE 891 (1057)
T ss_pred EECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-CEEEEEECCCCc
Confidence 9998887765542110 111122 22 2368899998654 589999998875
No 113
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.40 E-value=7.1 Score=36.80 Aligned_cols=236 Identities=10% Similarity=-0.043 Sum_probs=101.6
Q ss_pred cceEEEEeeCCCCceeEEEEeCC-CCceEeCCCCCCCCccccccEEEEE-eCCEEEEEeeeCCCCCCCceEEEEECCCCc
Q 014222 118 EEWIYVIKRDREGKISWHAFDPI-YQLWQPLPPIPKEYSEALGFGCAVL-SGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~-~~~W~~l~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 195 (428)
...||+.+. . ...+..|+.. ++++..+...+.. .. -..++.. ++..+|+.. .. ...+.+|+..++.
T Consensus 46 ~~~lyv~~~-~--~~~i~~~~~~~~g~l~~~~~~~~~--~~-p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g 113 (330)
T PRK11028 46 KRHLYVGVR-P--EFRVLSYRIADDGALTFAAESPLP--GS-PTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDG 113 (330)
T ss_pred CCEEEEEEC-C--CCcEEEEEECCCCceEEeeeecCC--CC-ceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCC
Confidence 567777653 2 2345555554 4566555433322 01 1223333 453566653 21 2467778775432
Q ss_pred --eeeCCCCCcCCcceeeEEE-C-CEEEEEccccCCCCCCCCeEEEEeCCCCc-eEEcC----CCCCCccceEEEE-ECC
Q 014222 196 --WHRAPDMLRRRHFFGSCVI-N-NCLYVAGGENGGVHRSLRSAEVYDPNKNR-WSFIS----DMSTAMVPFIGVV-YEG 265 (428)
Q Consensus 196 --W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~v~~yd~~t~~-W~~~~----~~p~~~~~~~~~~-~~g 265 (428)
...+..++.....|.+++. + ..+|+..-. .+.+.+||..++. ..... ..+.......++. -+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg 186 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ 186 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC
Confidence 1122222222223343333 3 366665432 2689999987632 21100 1111111112222 243
Q ss_pred -EEEEEecCCCCceeEEEEeCC--CCCeEec---CCCCc---CCCCCceEE--ECC-eEEEEEccCCcEEEEEeC--CCC
Q 014222 266 -KWFLKGLGSHRQVLSEAYQPE--TDSWFPV---YDGMV---AGWRNPSAS--LNR-HLYALDCKDGCKIRVYDE--VTD 331 (428)
Q Consensus 266 -~lyv~Gg~~~~~~~i~~yd~~--~~~W~~~---~~~~~---~~~~~~~~~--~~~-~lyv~gG~~~~~i~~yd~--~~~ 331 (428)
.+|+.... ...+.+||.. +++.+.+ ...+. .......+. -++ .||+.. ...+.|.+|+. +..
T Consensus 187 ~~lyv~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 187 QYAYCVNEL---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD-RTASLISVFSVSEDGS 262 (330)
T ss_pred CEEEEEecC---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec-CCCCeEEEEEEeCCCC
Confidence 56776321 2234455544 4454433 22111 111111122 244 577753 33356777765 444
Q ss_pred ceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 332 SWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 332 ~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.++.+...+.. ..+ .+..+...+..||+.+.....-.++..|..+
T Consensus 263 ~~~~~~~~~~~-~~p---~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 263 VLSFEGHQPTE-TQP---RGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred eEEEeEEEecc-ccC---CceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 56555543321 111 1233334456777765434333333335455
No 114
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.39 E-value=1.9 Score=40.33 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=101.6
Q ss_pred eeEEEEeCCCCceE---eCCCCCCCCc-cccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCC-----
Q 014222 132 ISWHAFDPIYQLWQ---PLPPIPKEYS-EALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDM----- 202 (428)
Q Consensus 132 ~~~~~yd~~~~~W~---~l~~~~~~~~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----- 202 (428)
.-+.+||++|-+-. .+|+-+.-.. ...+....+.+|..+||.-= .+..+|-+.|...++.-..-+.
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~ei~~PGC~~ 141 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVGEIDTPGCWL 141 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEEEEEGTSEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceeeeecCCCEEE
Confidence 35889999987532 2333211000 11122222335546777621 2567899999998876432111
Q ss_pred --CcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeE
Q 014222 203 --LRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLS 280 (428)
Q Consensus 203 --~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i 280 (428)
|.+-.++.+..-+|++..+.=-.++... ......||++.+-.-.-+.....-....-..++|++|-+.-........
T Consensus 142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG 220 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE
T ss_pred EEecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc
Confidence 2222234433334554443221122111 2344677777663221111111111122245788888753211111112
Q ss_pred EEEeCCC-----CCeEecCCCCcCCCCCceEE--ECCeEEEEE--ccCC------cEEEEEeCCCCceeeCcccccccCC
Q 014222 281 EAYQPET-----DSWFPVYDGMVAGWRNPSAS--LNRHLYALD--CKDG------CKIRVYDEVTDSWSKHIDSKMHLGN 345 (428)
Q Consensus 281 ~~yd~~~-----~~W~~~~~~~~~~~~~~~~~--~~~~lyv~g--G~~~------~~i~~yd~~~~~W~~v~~~~~~~~~ 345 (428)
..+...+ ..|. +.++. ..+. -.++||+.- |..+ ..||+||+++++=..--.+..+.
T Consensus 221 ~~~~~~t~~e~~~~Wr------PGG~Q-~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~-- 291 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWR------PGGWQ-LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI-- 291 (342)
T ss_dssp EEEESS-HHHHHTTEE------E-SSS--EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE--
T ss_pred CcccccCccccccCcC------Cccee-eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCcc--
Confidence 2333221 2332 22222 2333 368999873 2222 47999999998643322221111
Q ss_pred cccccceEEEEeCCe--EEEEeCCCeEEEEEeecCCC
Q 014222 346 SRALEAAALVPLNGK--LCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 346 ~~~~~~~~~~~~~~~--lyv~GG~~~~~~v~~yd~~~ 380 (428)
..-.+..+++ ||.+-+.+ ..+++||..+
T Consensus 292 -----~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~t 321 (342)
T PF06433_consen 292 -----DSIAVSQDDKPLLYALSAGD--GTLDVYDAAT 321 (342)
T ss_dssp -----SEEEEESSSS-EEEEEETTT--TEEEEEETTT
T ss_pred -----ceEEEccCCCcEEEEEcCCC--CeEEEEeCcC
Confidence 1223334444 55553322 2478999988
No 115
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.39 E-value=6.7 Score=36.50 Aligned_cols=240 Identities=13% Similarity=0.190 Sum_probs=101.0
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCcee
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWH 197 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 197 (428)
++.-|++|..+ .++.=+---.+|..+..-.... ....+..+...+...|++|... .++.-.-.-.+|+
T Consensus 27 ~~~G~~VG~~g----~il~T~DGG~tW~~~~~~~~~~-~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~ 94 (302)
T PF14870_consen 27 PNHGWAVGAYG----TILKTTDGGKTWQPVSLDLDNP-FDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWE 94 (302)
T ss_dssp SS-EEEEETTT----EEEEESSTTSS-EE-----S------EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-E
T ss_pred CCEEEEEecCC----EEEEECCCCccccccccCCCcc-ceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcE
Confidence 44556666321 3333334445788775322210 1223333334444888886421 2333333456899
Q ss_pred eCC-CCCcCCcceeeEE-ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCC
Q 014222 198 RAP-DMLRRRHFFGSCV-INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSH 275 (428)
Q Consensus 198 ~~~-~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~ 275 (428)
+++ +.+.+...+.+.. -++.+++++.. ..++.=.=.-.+|+.+..-...........-+|++.+++..
T Consensus 95 ~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-- 164 (302)
T PF14870_consen 95 RVPLSSKLPGSPFGITALGDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR-- 164 (302)
T ss_dssp E----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT--
T ss_pred EeecCCCCCCCeeEEEEcCCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc--
Confidence 985 2233444444444 35566666542 24444444566898875433322222222336675555522
Q ss_pred CceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEe--CCCCceeeCcccccccCCcccccc-e
Q 014222 276 RQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYD--EVTDSWSKHIDSKMHLGNSRALEA-A 352 (428)
Q Consensus 276 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd--~~~~~W~~v~~~~~~~~~~~~~~~-~ 352 (428)
-......|+-...|+.....-..+.......-++.|+++. .+..+..=+ -...+|.+... |..... .+ .
T Consensus 165 -G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~~~~~w~~~~~-~~~~~~----~~~l 236 (302)
T PF14870_consen 165 -GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPDDGETWSEPII-PIKTNG----YGIL 236 (302)
T ss_dssp -SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TTEEEEE---B--TTSS------S-EE
T ss_pred -ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCCCccccccccC-CcccCc----eeeE
Confidence 1123467888889998865222222222334578888876 233555555 45567888321 221111 11 1
Q ss_pred -EEEEeCCeEEEEeCCCeEEEEEeecCCCCCCCccccccceeccCC
Q 014222 353 -ALVPLNGKLCIIRNNMSISLVDVSKSNGERGASAEHLWETISGKG 397 (428)
Q Consensus 353 -~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~~~~~ 397 (428)
.+...++.+++.||... +.+-.-.. ++|+......
T Consensus 237 d~a~~~~~~~wa~gg~G~---l~~S~DgG-------ktW~~~~~~~ 272 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGSGT---LLVSTDGG-------KTWQKDRVGE 272 (302)
T ss_dssp EEEESSSS-EEEEESTT----EEEESSTT-------SS-EE-GGGT
T ss_pred EEEecCCCCEEEEeCCcc---EEEeCCCC-------ccceECcccc
Confidence 23344689999998764 22333333 8999876543
No 116
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.64 E-value=17 Score=39.11 Aligned_cols=182 Identities=8% Similarity=0.001 Sum_probs=87.6
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEE--ECCEEEEEccccCCCCCCCCeEEEEeCCCCce-
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCV--INNCLYVAGGENGGVHRSLRSAEVYDPNKNRW- 245 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W- 245 (428)
..++.|+.+ ..+.+||..+++-...-.... ..-.+++. .++.+++.||.+ ..+.+||..+..-
T Consensus 546 ~~las~~~D------g~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D-------g~v~iWd~~~~~~~ 611 (793)
T PLN00181 546 SQVASSNFE------GVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDD-------GSVKLWSINQGVSI 611 (793)
T ss_pred CEEEEEeCC------CeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCC-------CEEEEEECCCCcEE
Confidence 355555544 268888987764322111111 11122233 246677777764 5788999876532
Q ss_pred EEcCCCCCCccceEEEE---ECCEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEEECCeEEEEEccCC
Q 014222 246 SFISDMSTAMVPFIGVV---YEGKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSASLNRHLYALDCKDG 320 (428)
Q Consensus 246 ~~~~~~p~~~~~~~~~~---~~g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~ 320 (428)
..+.. . .....+. -++.+++.|+.+ ..+..||..+.. ...+..... .-......++..++.++.++
T Consensus 612 ~~~~~---~-~~v~~v~~~~~~g~~latgs~d---g~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~ 682 (793)
T PLN00181 612 GTIKT---K-ANICCVQFPSESGRSLAFGSAD---HKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDN 682 (793)
T ss_pred EEEec---C-CCeEEEEEeCCCCCEEEEEeCC---CeEEEEECCCCCccceEecCCCC--CEEEEEEeCCCEEEEEECCC
Confidence 11111 1 1111121 246666766543 247789986543 112211000 00112224666667776654
Q ss_pred cEEEEEeCCCC----ceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 321 CKIRVYDEVTD----SWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 321 ~~i~~yd~~~~----~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.|.+||.... .|..+..+...... ........++.+++.|+.++ .+.+|+...
T Consensus 683 -~ikiWd~~~~~~~~~~~~l~~~~gh~~~----i~~v~~s~~~~~lasgs~D~--~v~iw~~~~ 739 (793)
T PLN00181 683 -TLKLWDLSMSISGINETPLHSFMGHTNV----KNFVGLSVSDGYIATGSETN--EVFVYHKAF 739 (793)
T ss_pred -EEEEEeCCCCccccCCcceEEEcCCCCC----eeEEEEcCCCCEEEEEeCCC--EEEEEECCC
Confidence 7888987643 24333322111110 11233444567777777655 345666544
No 117
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.49 E-value=13 Score=37.40 Aligned_cols=204 Identities=14% Similarity=0.163 Sum_probs=102.4
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCc--eEeCCCCCCCC--ccccccEEEEEe-CCEEEEEeeeCCCCCCCceEEEEECC
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQL--WQPLPPIPKEY--SEALGFGCAVLS-GCHLYLFGGKDPLKGSMRRVIFYSAR 192 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~--W~~l~~~~~~~--~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~ 192 (428)
++.+|+...+ ..++++|..+++ |+.-...+... ......++++.+ + .||+... ...++.+|..
T Consensus 61 ~g~vy~~~~~----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~-~V~v~~~-------~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSH----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR-KVFFGTF-------DGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCC----CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC-eEEEecC-------CCeEEEEECC
Confidence 6777776432 368889998775 76533222000 001122334455 5 7886521 2378899988
Q ss_pred CCc--eeeCCCCCc-C--CcceeeEEECCEEEEEccccCCC--CCCCCeEEEEeCCCC--ceEEcCCCCC----Cc----
Q 014222 193 TNK--WHRAPDMLR-R--RHFFGSCVINNCLYVAGGENGGV--HRSLRSAEVYDPNKN--RWSFISDMST----AM---- 255 (428)
Q Consensus 193 t~~--W~~~~~~~~-~--r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~v~~yd~~t~--~W~~~~~~p~----~~---- 255 (428)
|.+ |+.-..-.. . ....+.++.++.+|+ |...... ......+.++|..|. .|+.-...+. +.
T Consensus 129 TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~ 207 (488)
T cd00216 129 TGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPD 207 (488)
T ss_pred CCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCC
Confidence 775 875432211 0 112344566777775 3321100 012357899999875 5865321110 00
Q ss_pred ----------cceEEEE--ECCEEEEEecCCC--------------CceeEEEEeCCCC--CeEecCCCCc----CCCCC
Q 014222 256 ----------VPFIGVV--YEGKWFLKGLGSH--------------RQVLSEAYQPETD--SWFPVYDGMV----AGWRN 303 (428)
Q Consensus 256 ----------~~~~~~~--~~g~lyv~Gg~~~--------------~~~~i~~yd~~~~--~W~~~~~~~~----~~~~~ 303 (428)
...+.+. .++.+|+-.+... ....++++|.++. .|+.-..... .....
T Consensus 208 ~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 208 RQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred cceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 0011222 3578888644321 1125899999877 4886432111 11111
Q ss_pred ceEE----ECCe---EEEEEccCCcEEEEEeCCCCc--eee
Q 014222 304 PSAS----LNRH---LYALDCKDGCKIRVYDEVTDS--WSK 335 (428)
Q Consensus 304 ~~~~----~~~~---lyv~gG~~~~~i~~yd~~~~~--W~~ 335 (428)
+.+. .++. +.+++..+ ..++.+|.++.+ |+.
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~-G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKN-GFFYVLDRTTGKLISAR 327 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCC-ceEEEEECCCCcEeeEe
Confidence 1111 2332 33344433 369999988875 774
No 118
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.85 E-value=9.6 Score=34.53 Aligned_cols=225 Identities=12% Similarity=0.030 Sum_probs=121.3
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCC-CCcCCcceee
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPD-MLRRRHFFGS 211 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~ 211 (428)
.+=.+||.+++-...+- +.. ..-|++++-.++..++.-+ ..-+-++|++|..-++.+- ...+-.+.-.
T Consensus 84 aiGhLdP~tGev~~ypL-g~G---a~Phgiv~gpdg~~Witd~-------~~aI~R~dpkt~evt~f~lp~~~a~~nlet 152 (353)
T COG4257 84 AIGHLDPATGEVETYPL-GSG---ASPHGIVVGPDGSAWITDT-------GLAIGRLDPKTLEVTRFPLPLEHADANLET 152 (353)
T ss_pred cceecCCCCCceEEEec-CCC---CCCceEEECCCCCeeEecC-------cceeEEecCcccceEEeecccccCCCcccc
Confidence 45678999988766643 221 2334444432223555421 2267889998887666432 1223333344
Q ss_pred EEEC--CEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC
Q 014222 212 CVIN--NCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS 289 (428)
Q Consensus 212 ~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~ 289 (428)
++++ |.++..|-.. .. -..||.++.-+..+.....-.+-.++.-+|.+|+..-.. +.+-..|+.+..
T Consensus 153 ~vfD~~G~lWFt~q~G--~y------GrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag---naiaridp~~~~ 221 (353)
T COG4257 153 AVFDPWGNLWFTGQIG--AY------GRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG---NAIARIDPFAGH 221 (353)
T ss_pred eeeCCCccEEEeeccc--cc------eecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc---cceEEcccccCC
Confidence 5554 5777766432 11 146666665554443322222334455689998863221 235677887775
Q ss_pred eEecCCCCcCCCCC---ceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeC
Q 014222 290 WFPVYDGMVAGWRN---PSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRN 366 (428)
Q Consensus 290 W~~~~~~~~~~~~~---~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 366 (428)
=+.+.. |...... ..+---+++.+..-. +..+++|||.+.+|.+-.- |...++. ..--+--.|++++-
T Consensus 222 aev~p~-P~~~~~gsRriwsdpig~~wittwg-~g~l~rfdPs~~sW~eypL-Pgs~arp----ys~rVD~~grVW~s-- 292 (353)
T COG4257 222 AEVVPQ-PNALKAGSRRIWSDPIGRAWITTWG-TGSLHRFDPSVTSWIEYPL-PGSKARP----YSMRVDRHGRVWLS-- 292 (353)
T ss_pred cceecC-CCcccccccccccCccCcEEEeccC-CceeeEeCcccccceeeeC-CCCCCCc----ceeeeccCCcEEee--
Confidence 455543 2221111 122345777777432 3489999999999998653 3222222 12223334555552
Q ss_pred CCeEEEEEeecCCCCCCCccccccceecc
Q 014222 367 NMSISLVDVSKSNGERGASAEHLWETISG 395 (428)
Q Consensus 367 ~~~~~~v~~yd~~~~~~~~~~~~W~~~~~ 395 (428)
.-..+.+..||+++ -+.++++.
T Consensus 293 ea~agai~rfdpet-------a~ftv~p~ 314 (353)
T COG4257 293 EADAGAIGRFDPET-------ARFTVLPI 314 (353)
T ss_pred ccccCceeecCccc-------ceEEEecC
Confidence 22344577899999 88877653
No 119
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.65 E-value=8.9 Score=38.95 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=66.6
Q ss_pred EEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc--eeeCCCCCcC--------CcceeeEEECCEEEEEccccCCCCCC
Q 014222 162 CAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK--WHRAPDMLRR--------RHFFGSCVINNCLYVAGGENGGVHRS 231 (428)
Q Consensus 162 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~ 231 (428)
.++.++ .||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+... +
T Consensus 65 Pvv~~g-~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d------ 129 (527)
T TIGR03075 65 PLVVDG-VMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D------ 129 (527)
T ss_pred CEEECC-EEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C------
Confidence 345566 8888633 2358888888764 8754332211 112235677889887432 1
Q ss_pred CCeEEEEeCCCC--ceEEcC-CCCCC-ccceEEEEECCEEEEEec--CCCCceeEEEEeCCCCC--eEec
Q 014222 232 LRSAEVYDPNKN--RWSFIS-DMSTA-MVPFIGVVYEGKWFLKGL--GSHRQVLSEAYQPETDS--WFPV 293 (428)
Q Consensus 232 ~~~v~~yd~~t~--~W~~~~-~~p~~-~~~~~~~~~~g~lyv~Gg--~~~~~~~i~~yd~~~~~--W~~~ 293 (428)
..+.++|..|. .|+.-. ..... ....+-++.+++||+-.. +....-.+.+||.++++ |+.-
T Consensus 130 -g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 130 -ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 47899999876 576532 22111 122344567899888532 11122357899998874 7643
No 120
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.43 E-value=17 Score=36.55 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=80.2
Q ss_pred CceEEEEECCCCc--eeeCCCCC-c--CCcceeeEE-----ECCE---EEEEccccCCCCCCCCeEEEEeCCCCc--eEE
Q 014222 183 MRRVIFYSARTNK--WHRAPDML-R--RRHFFGSCV-----INNC---LYVAGGENGGVHRSLRSAEVYDPNKNR--WSF 247 (428)
Q Consensus 183 ~~~v~~yd~~t~~--W~~~~~~~-~--~r~~~~~~~-----~~~~---iyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~ 247 (428)
...++.+|..|.+ |+.-...+ . -+......+ .++. +.++|..+ ..+.++|..+.+ |+.
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-------G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-------GFFYVLDRTTGKLISAR 327 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-------ceEEEEECCCCcEeeEe
Confidence 3579999998875 87522111 0 011111111 2232 33334332 468899998874 764
Q ss_pred cCCCCCCccceEEEEECCEEEEEecC--------------CCCceeEEEEeCCCC--CeEecCCCC-------cCCCCCc
Q 014222 248 ISDMSTAMVPFIGVVYEGKWFLKGLG--------------SHRQVLSEAYQPETD--SWFPVYDGM-------VAGWRNP 304 (428)
Q Consensus 248 ~~~~p~~~~~~~~~~~~g~lyv~Gg~--------------~~~~~~i~~yd~~~~--~W~~~~~~~-------~~~~~~~ 304 (428)
-... ...+.-.+.+|+-... ....-.+.++|..+. .|+.-.... ......+
T Consensus 328 ~~~~------~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~ 401 (488)
T cd00216 328 PEVE------QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGS 401 (488)
T ss_pred Eeec------cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcc
Confidence 2210 0111122667774311 011224788998876 487643200 1111223
Q ss_pred eEEECCeEEEEEccCCcEEEEEeCCCCc--eeeCcccccccCCcccccceEEEEeCCeEEEE
Q 014222 305 SASLNRHLYALDCKDGCKIRVYDEVTDS--WSKHIDSKMHLGNSRALEAAALVPLNGKLCII 364 (428)
Q Consensus 305 ~~~~~~~lyv~gG~~~~~i~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~ 364 (428)
.++.++.||+.. .+ ..++.+|.++.+ |+. .++... . ....+...++++||.
T Consensus 402 ~~~~g~~v~~g~-~d-G~l~ald~~tG~~lW~~--~~~~~~--~---a~P~~~~~~g~~yv~ 454 (488)
T cd00216 402 LATAGNLVFAGA-AD-GYFRAFDATTGKELWKF--RTPSGI--Q---ATPMTYEVNGKQYVG 454 (488)
T ss_pred eEecCCeEEEEC-CC-CeEEEEECCCCceeeEE--ECCCCc--e---EcCEEEEeCCEEEEE
Confidence 445566665543 33 379999998874 774 222111 1 123444669999986
No 121
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.33 E-value=11 Score=34.17 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=98.0
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeC-CEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSG-CHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
..+-.+|+++..-+..+- |.... -.+.-.+++++ ++|+..|- .+.. =++||.++.-+..+...-.--+..
T Consensus 124 ~aI~R~dpkt~evt~f~l-p~~~a-~~nlet~vfD~~G~lWFt~q-~G~y------GrLdPa~~~i~vfpaPqG~gpyGi 194 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPL-PLEHA-DANLETAVFDPWGNLWFTGQ-IGAY------GRLDPARNVISVFPAPQGGGPYGI 194 (353)
T ss_pred ceeEEecCcccceEEeec-ccccC-CCcccceeeCCCccEEEeec-cccc------eecCcccCceeeeccCCCCCCcce
Confidence 367888988877665532 22111 12334455543 25666653 2211 156676665443322211112223
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccce--EEEEECCEEEEEecCCCCceeEEEEeCCCC
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF--IGVVYEGKWFLKGLGSHRQVLSEAYQPETD 288 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~--~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~ 288 (428)
++.-+|.+|+..=.. +.+-..|+.+..=+.++......... .-+---|++.+.. ...-.++.|||...
T Consensus 195 ~atpdGsvwyaslag-------naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt---wg~g~l~rfdPs~~ 264 (353)
T COG4257 195 CATPDGSVWYASLAG-------NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT---WGTGSLHRFDPSVT 264 (353)
T ss_pred EECCCCcEEEEeccc-------cceEEcccccCCcceecCCCcccccccccccCccCcEEEec---cCCceeeEeCcccc
Confidence 444578888763221 45566777766444444321101111 1122345666652 22335789999999
Q ss_pred CeEecCCCCcCCCC-Cce-EEECCeEEEEEccCCcEEEEEeCCCCceeeCcc
Q 014222 289 SWFPVYDGMVAGWR-NPS-ASLNRHLYALDCKDGCKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 289 ~W~~~~~~~~~~~~-~~~-~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~ 338 (428)
.|.+.+- |..... .++ +--.+++++..- +.+.|..||+++.+.+.+..
T Consensus 265 sW~eypL-Pgs~arpys~rVD~~grVW~sea-~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 265 SWIEYPL-PGSKARPYSMRVDRHGRVWLSEA-DAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred cceeeeC-CCCCCCcceeeeccCCcEEeecc-ccCceeecCcccceEEEecC
Confidence 9998753 332222 222 233566776543 23579999999999998753
No 122
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.24 E-value=7.4 Score=39.53 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=68.2
Q ss_pred eeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCCCCCc--------cceEEEEECCEEEEEecCCCCce
Q 014222 209 FGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDMSTAM--------VPFIGVVYEGKWFLKGLGSHRQV 278 (428)
Q Consensus 209 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~~--------~~~~~~~~~g~lyv~Gg~~~~~~ 278 (428)
.+.++.++.||+.... ..+.++|..|. .|+.-...+... .....++.++++|+.... .
T Consensus 63 stPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d----g 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD----A 130 (527)
T ss_pred cCCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC----C
Confidence 3456779999996442 36888998865 687654332111 112346678899875421 2
Q ss_pred eEEEEeCCCCC--eEecCCCCcC--CCCCceEEECCeEEEEEccC----CcEEEEEeCCCCc--eee
Q 014222 279 LSEAYQPETDS--WFPVYDGMVA--GWRNPSASLNRHLYALDCKD----GCKIRVYDEVTDS--WSK 335 (428)
Q Consensus 279 ~i~~yd~~~~~--W~~~~~~~~~--~~~~~~~~~~~~lyv~gG~~----~~~i~~yd~~~~~--W~~ 335 (428)
.+.++|.++++ |+.-...... ....+.++.+++||+-.... ...|..||.++.+ |+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 47899998874 8754321211 12233456788887753211 1368888887764 663
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.02 E-value=11 Score=33.39 Aligned_cols=176 Identities=12% Similarity=0.051 Sum_probs=96.1
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcceeeEEEC--CEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEE
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHFFGSCVIN--NCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGV 261 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~ 261 (428)
+.+.++|..|++-.+. +...-...-++.++ ..+.+.|+.+ .++.+||-.+++-+.+..+...+-+...+
T Consensus 81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 4789999998863221 00001111133343 3566767765 68999999999988888887788787888
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCccccc
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKM 341 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~ 341 (428)
.+.+...+.|.... .+-.||+..++-.. +.+..+..+....-++..-++|-.+ +.+...|.++.+--+.-.--.
T Consensus 152 ~v~~heIvaGS~DG---tvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~-stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 152 DVAEHEIVAGSVDG---TVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLD-STLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred EecccEEEeeccCC---cEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeecc-ceeeecccchhHHHHHhcccc
Confidence 88888777764322 24588887765321 1111111111223345555555444 467777877765332211000
Q ss_pred ccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 342 HLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
. ..+ -.-++..+..-.|++|.+. ..|+.||+..
T Consensus 226 n-~ey----kldc~l~qsdthV~sgSED-G~Vy~wdLvd 258 (307)
T KOG0316|consen 226 N-MEY----KLDCCLNQSDTHVFSGSED-GKVYFWDLVD 258 (307)
T ss_pred c-cee----eeeeeecccceeEEeccCC-ceEEEEEecc
Confidence 0 001 1223333334445565432 3477888766
No 124
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.93 E-value=0.16 Score=46.25 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHhcccccC-----CccchhhhchHhHHhhhcCChhHHHHH
Q 014222 67 LLPGLPDDLAIACLIRVPR-----VEHCKLRLVCKRWHRLLSGNFYYSLRK 112 (428)
Q Consensus 67 ~~~~lpddl~~~il~rlp~-----~~l~~~~~v~k~W~~l~~~~~f~~~r~ 112 (428)
.+..||||++.+|+.++-. .++.++.+|||.|.....+|+++..-+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 4578999999999976553 788899999999999999999766543
No 125
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=90.75 E-value=12 Score=33.53 Aligned_cols=204 Identities=14% Similarity=0.170 Sum_probs=92.2
Q ss_pred ccEEEEEeCCEEEEEee-eCCCCCCCceEEEEE---CCCCceee--CCCCCc-------CCcceeeEEECCEEEEEcccc
Q 014222 159 GFGCAVLSGCHLYLFGG-KDPLKGSMRRVIFYS---ARTNKWHR--APDMLR-------RRHFFGSCVINNCLYVAGGEN 225 (428)
Q Consensus 159 ~~~~~~~~~~~lyv~GG-~~~~~~~~~~v~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~ 225 (428)
.+++.++++ ++|.+=- +.-....+...+.|| ...+.|+. ++..+. ...-|+.+.+++.-|++|=.+
T Consensus 77 CmSMGv~~N-RLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn 155 (367)
T PF12217_consen 77 CMSMGVVGN-RLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN 155 (367)
T ss_dssp -B-EEEETT-EEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE
T ss_pred eeeeeeecc-eeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc
Confidence 456788888 7887643 222222344555565 35677875 333333 345577888888888888665
Q ss_pred CCCCCCCCeEEEEeCCCCce--------EEcC-CCCCCccceEEEEECCEEEEEe-cCC--CCceeEEEEeCCCCCeEec
Q 014222 226 GGVHRSLRSAEVYDPNKNRW--------SFIS-DMSTAMVPFIGVVYEGKWFLKG-LGS--HRQVLSEAYQPETDSWFPV 293 (428)
Q Consensus 226 ~~~~~~~~~v~~yd~~t~~W--------~~~~-~~p~~~~~~~~~~~~g~lyv~G-g~~--~~~~~i~~yd~~~~~W~~~ 293 (428)
.+ -.+..--..|-+ +.| +.++ ......+...+-.++|+||+.. |.. ....++..-+..-..|+.+
T Consensus 156 GD-~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 156 GD-VSPRELGFLYFS--DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp -S-SSS-EEEEEEET--TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEE
T ss_pred CC-CCcceeeEEEec--ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhc
Confidence 32 111112223322 222 1122 1111222344566899999984 322 2223466777778889988
Q ss_pred CCCCcCCCC---CceEEECCeEEEEEccC-------C--------c--EEE-------EEeCCCCceeeCcccccccCCc
Q 014222 294 YDGMVAGWR---NPSASLNRHLYALDCKD-------G--------C--KIR-------VYDEVTDSWSKHIDSKMHLGNS 346 (428)
Q Consensus 294 ~~~~~~~~~---~~~~~~~~~lyv~gG~~-------~--------~--~i~-------~yd~~~~~W~~v~~~~~~~~~~ 346 (428)
.- + ...+ .+.+..++.||++|-.. + + ... .+.++.-+|..+..-.-+-.-.
T Consensus 233 rf-p-~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~iv 310 (367)
T PF12217_consen 233 RF-P-NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIV 310 (367)
T ss_dssp E--T-T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS
T ss_pred cc-c-ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccc
Confidence 64 2 2222 23578999999998321 0 1 111 1355666777776543222222
Q ss_pred ccccc-eEEEEeCCeEE-EEeCCC
Q 014222 347 RALEA-AALVPLNGKLC-IIRNNM 368 (428)
Q Consensus 347 ~~~~~-~~~~~~~~~ly-v~GG~~ 368 (428)
....+ .+++.-++-|| +|||.+
T Consensus 311 NSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 311 NSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ---SEEEEEEEETTEEEEEEEEB-
T ss_pred cccccceeEEEECCEEEEEecCcc
Confidence 22223 33556677776 577754
No 126
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.59 E-value=13 Score=33.64 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=99.9
Q ss_pred EEEEEeeeCCCCCCCceEEEEECC-----CCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSAR-----TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN 243 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~ 243 (428)
++|++.+..+. .+..|... .++..+.-.+|.+-.+.+.++.+|.+|---. ....+..||+.++
T Consensus 32 ~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-------~s~~IvkydL~t~ 99 (250)
T PF02191_consen 32 KIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-------NSRNIVKYDLTTR 99 (250)
T ss_pred CEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-------CCceEEEEECcCC
Confidence 68888775432 55555432 2333333455666777788889999988643 2478999999998
Q ss_pred ceE---EcCCCCC------Cccc---eEEEEECCEEEEEec--CCCCceeEEEEeCCC----CCeEecCCCCcCCCCCce
Q 014222 244 RWS---FISDMST------AMVP---FIGVVYEGKWFLKGL--GSHRQVLSEAYQPET----DSWFPVYDGMVAGWRNPS 305 (428)
Q Consensus 244 ~W~---~~~~~p~------~~~~---~~~~~~~g~lyv~Gg--~~~~~~~i~~yd~~~----~~W~~~~~~~~~~~~~~~ 305 (428)
+=. .++.... ...+ .-.++=++-|+|+=. .+.....+-..|+.+ .+|..- ........+
T Consensus 100 ~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~---~~k~~~~na 176 (250)
T PF02191_consen 100 SVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS---YPKRSAGNA 176 (250)
T ss_pred cEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec---cCchhhcce
Confidence 644 4432111 0011 222333444666622 222234467778765 357642 122222235
Q ss_pred EEECCeEEEEEccCC---cEEEEEeCCCCceeeCcccccccCCcccccceEEEEe---CCeEEEEeC
Q 014222 306 ASLNRHLYALDCKDG---CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPL---NGKLCIIRN 366 (428)
Q Consensus 306 ~~~~~~lyv~gG~~~---~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG 366 (428)
.++=|.||++...+. .-.++||..+++=..+. ++... . ....+++.+ +.+||+.-.
T Consensus 177 FmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~-~---~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 177 FMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPN-P---YGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred eeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeecc-c---cCceEeeeECCCCCeEEEEEC
Confidence 567789999986542 23589999988655432 22221 1 123445544 478888743
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=90.42 E-value=13 Score=33.52 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=98.6
Q ss_pred EEEEEeeeCCCCCCCceEEEEECC----CCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCc
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSAR----TNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNR 244 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~ 244 (428)
++|++.+... ..+.+..|... ..++.+.-.+|.+-.+.+.++.+|.+|.--.. ...+..||+.+++
T Consensus 36 ~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-------s~~iiKydL~t~~ 105 (255)
T smart00284 36 LYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-------SHDICRFDLTTET 105 (255)
T ss_pred eEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-------CccEEEEECCCCc
Confidence 7888755421 23456666542 33343333466777778899999999985432 3689999999987
Q ss_pred eEEcCCCCCCcc------------ceEEEEECCEEEEE-ec-CCCCceeEEEEeCCCC----CeEecCCCCcCCCCCceE
Q 014222 245 WSFISDMSTAMV------------PFIGVVYEGKWFLK-GL-GSHRQVLSEAYQPETD----SWFPVYDGMVAGWRNPSA 306 (428)
Q Consensus 245 W~~~~~~p~~~~------------~~~~~~~~g~lyv~-Gg-~~~~~~~i~~yd~~~~----~W~~~~~~~~~~~~~~~~ 306 (428)
=.....+|.+.+ ..-.++=++-|+|+ .. .+.+...+-..||.+- +|..-- +. .....+.
T Consensus 106 v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~--~k-~sa~naF 182 (255)
T smart00284 106 YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTY--NK-RSASNAF 182 (255)
T ss_pred EEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCC--Cc-ccccccE
Confidence 654444443211 11223334445555 22 3334444667888654 576521 22 2222345
Q ss_pred EECCeEEEEEcc--CCcE-EEEEeCCCCceeeCcccccccCCcccccceEEEEe---CCeEEEEe
Q 014222 307 SLNRHLYALDCK--DGCK-IRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPL---NGKLCIIR 365 (428)
Q Consensus 307 ~~~~~lyv~gG~--~~~~-i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~---~~~lyv~G 365 (428)
++=|.||++-.. .... .++||..+++=.. ..++... . ....+++.+ +.+||+.-
T Consensus 183 mvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n-~---y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 183 MICGILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFEN-M---YEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EEeeEEEEEccCCCCCcEEEEEEECCCCccce-eeeeecc-c---cccceeceeCCCCCeEEEEe
Confidence 666899999632 1223 5889999876332 2222221 1 123444443 47888874
No 128
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.35 E-value=11 Score=32.53 Aligned_cols=144 Identities=17% Similarity=0.076 Sum_probs=71.8
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCce--EEcC----CCCCCccceEEEEE--CCEEEEEecCCCCceeEEE
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRW--SFIS----DMSTAMVPFIGVVY--EGKWFLKGLGSHRQVLSEA 282 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W--~~~~----~~p~~~~~~~~~~~--~g~lyv~Gg~~~~~~~i~~ 282 (428)
+....+++|++-| ..+++++...... ..+. .+|.. .. ++... ++++|++-|. ..+.
T Consensus 12 ~~~~~g~~y~FkG---------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg~-----~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKG---------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKGD-----KYWV 75 (194)
T ss_pred EEEeCCEEEEEeC---------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECCC-----EEEE
Confidence 3445689999966 3566666542111 1121 12211 11 22222 3899999553 3567
Q ss_pred EeCCCCCeE---ecCC--CCc-CCCCCceEEE--CCeEEEEEccCCcEEEEEeCCCCceeeC-----cccccccCCcccc
Q 014222 283 YQPETDSWF---PVYD--GMV-AGWRNPSASL--NRHLYALDCKDGCKIRVYDEVTDSWSKH-----IDSKMHLGNSRAL 349 (428)
Q Consensus 283 yd~~~~~W~---~~~~--~~~-~~~~~~~~~~--~~~lyv~gG~~~~~i~~yd~~~~~W~~v-----~~~~~~~~~~~~~ 349 (428)
||..+..+. .+.. .++ ...-.++... ++++|++.| +..|+||...++...- ...-...+..
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg---~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--- 149 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG---DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--- 149 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC---CEEEEEeCCCccccCCCCcchhhcCCCcCCC---
Confidence 776542221 1111 011 0111123333 689999986 5789999866553211 0000011110
Q ss_pred cceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 350 EAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
..++....++++|++-|. ..+.||..+
T Consensus 150 idaa~~~~~~~~yfF~g~----~y~~~d~~~ 176 (194)
T cd00094 150 VDAAFRWLDGYYYFFKGD----QYWRFDPRS 176 (194)
T ss_pred cceeEEeCCCcEEEEECC----EEEEEeCcc
Confidence 123333444899999775 467788877
No 129
>PRK13684 Ycf48-like protein; Provisional
Probab=89.84 E-value=18 Score=34.28 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=90.0
Q ss_pred CceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCC-CCcCCc-ceeeEEECCEEE
Q 014222 142 QLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPD-MLRRRH-FFGSCVINNCLY 219 (428)
Q Consensus 142 ~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~-~~~~~~~~~~iy 219 (428)
..|+.... +.. ..-+.++..+..+.|++|-. ..++.=+-.-.+|+.... ++.... ...+...++..|
T Consensus 35 ~~W~~~~~-~~~---~~l~~v~F~d~~~g~avG~~-------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~ 103 (334)
T PRK13684 35 SPWQVIDL-PTE---ANLLDIAFTDPNHGWLVGSN-------RTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGW 103 (334)
T ss_pred CCcEEEec-CCC---CceEEEEEeCCCcEEEEECC-------CEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEE
Confidence 45876642 221 23445556555467777631 123332223457988643 222222 223333455566
Q ss_pred EEccccCCCCCCCCeEEEEeCCCCceEEcCCC-CCCccceEEEEE-CCEEEEEecCCCCceeEEEEeCCCCCeEecCCCC
Q 014222 220 VAGGENGGVHRSLRSAEVYDPNKNRWSFISDM-STAMVPFIGVVY-EGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGM 297 (428)
Q Consensus 220 v~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~~~~~~~~~~-~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~ 297 (428)
+.|.. ..+..=+=.-.+|+.+... ..+........+ ++.+|+.|.. -.++.=+-.-.+|+.+....
T Consensus 104 ~~G~~--------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~----G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 104 IVGQP--------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV----GAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred EeCCC--------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc----ceEEEECCCCCCceeCcCCC
Confidence 66532 1222222223589888532 111122223333 3445665531 12333333456899886533
Q ss_pred cCCCCCceEEECCeEEEEEccCCcEEEE-EeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCC
Q 014222 298 VAGWRNPSASLNRHLYALDCKDGCKIRV-YDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNN 367 (428)
Q Consensus 298 ~~~~~~~~~~~~~~lyv~gG~~~~~i~~-yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 367 (428)
...........+..|++.|..+ .++. .|....+|+.+.... .. . ........++.++++|..
T Consensus 172 -~g~~~~i~~~~~g~~v~~g~~G-~i~~s~~~gg~tW~~~~~~~-~~--~---l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 172 -AGVVRNLRRSPDGKYVAVSSRG-NFYSTWEPGQTAWTPHQRNS-SR--R---LQSMGFQPDGNLWMLARG 234 (334)
T ss_pred -cceEEEEEECCCCeEEEEeCCc-eEEEEcCCCCCeEEEeeCCC-cc--c---ceeeeEcCCCCEEEEecC
Confidence 2222223333444455544444 3443 355567899885421 11 1 112233456778887654
No 130
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.83 E-value=20 Score=34.83 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=97.4
Q ss_pred EeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCC------CcC-----
Q 014222 137 FDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDM------LRR----- 205 (428)
Q Consensus 137 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~------~~~----- 205 (428)
=+-.-++|..++..+..+ -........+++.++++|.. ..+++-+-.-.+|+.+... ...
T Consensus 161 T~DgG~tW~~~~~~~~~p--~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~ 231 (398)
T PLN00033 161 TSDGGETWERIPLSPKLP--GEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGI 231 (398)
T ss_pred EcCCCCCceECccccCCC--CCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEcccccccccccccccccc
Confidence 344456898876432211 11223344444357777632 1355555455689876211 110
Q ss_pred -------CcceeeEE-ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCc
Q 014222 206 -------RHFFGSCV-INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQ 277 (428)
Q Consensus 206 -------r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~ 277 (428)
...+++.. -++.++++|-.. +-....|.....|+.+...............++.+++.|...
T Consensus 232 ~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--- 301 (398)
T PLN00033 232 SGASYYTGTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG--- 301 (398)
T ss_pred cccceeccceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc---
Confidence 01111121 234455554321 222334555555888765443333233334578888886321
Q ss_pred eeEEEEeCCCC-----CeEecCCCCcCCCCCceE--EECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCccccc
Q 014222 278 VLSEAYQPETD-----SWFPVYDGMVAGWRNPSA--SLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALE 350 (428)
Q Consensus 278 ~~i~~yd~~~~-----~W~~~~~~~~~~~~~~~~--~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~ 350 (428)
.+..-+..-. +|+++.. .........+ .-++.++++|... .+++-....++|+...... ..... .
T Consensus 302 -~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~G--~v~~s~D~G~tW~~~~~~~-~~~~~---l 373 (398)
T PLN00033 302 -GLYVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGSG--ILLRSTDGGKSWKRDKGAD-NIAAN---L 373 (398)
T ss_pred -eEEEecCCCCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECCC--cEEEeCCCCcceeEccccC-CCCcc---e
Confidence 1222222222 4565543 1111111122 2367888888532 4666677788999976311 11111 0
Q ss_pred ceEEEEeCCeEEEEeCCC
Q 014222 351 AAALVPLNGKLCIIRNNM 368 (428)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~ 368 (428)
.......+++.|++|...
T Consensus 374 y~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 374 YSVKFFDDKKGFVLGNDG 391 (398)
T ss_pred eEEEEcCCCceEEEeCCc
Confidence 123335568999988643
No 131
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=89.81 E-value=12 Score=32.25 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=52.7
Q ss_pred CEEEEEccccCCCCCCCCeEEEEeCCCCceE---EcC--CCCC-CccceEEEEE--CCEEEEEecCCCCceeEEEEeCCC
Q 014222 216 NCLYVAGGENGGVHRSLRSAEVYDPNKNRWS---FIS--DMST-AMVPFIGVVY--EGKWFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 216 ~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~---~~~--~~p~-~~~~~~~~~~--~g~lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
+++|++-| +..++||..+..+. .+. ..+. +..--++... ++++|++.|. ..+.||...
T Consensus 63 ~~~yfFkg---------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-----~y~ry~~~~ 128 (194)
T cd00094 63 GKIYFFKG---------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-----KYWRYDEKT 128 (194)
T ss_pred CEEEEECC---------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-----EEEEEeCCC
Confidence 78999966 35677776542221 111 1111 0111223333 6899999763 246787655
Q ss_pred CCeEe-----cCC-C--CcCCCCCceEEE-CCeEEEEEccCCcEEEEEeCCCCc
Q 014222 288 DSWFP-----VYD-G--MVAGWRNPSASL-NRHLYALDCKDGCKIRVYDEVTDS 332 (428)
Q Consensus 288 ~~W~~-----~~~-~--~~~~~~~~~~~~-~~~lyv~gG~~~~~i~~yd~~~~~ 332 (428)
++-.. +.. . .+... .++... ++++|++-| +..++||..+++
T Consensus 129 ~~v~~~yP~~i~~~w~g~p~~i-daa~~~~~~~~yfF~g---~~y~~~d~~~~~ 178 (194)
T cd00094 129 QKMDPGYPKLIETDFPGVPDKV-DAAFRWLDGYYYFFKG---DQYWRFDPRSKE 178 (194)
T ss_pred ccccCCCCcchhhcCCCcCCCc-ceeEEeCCCcEEEEEC---CEEEEEeCccce
Confidence 54321 110 0 11111 122334 489999976 579999998776
No 132
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.36 E-value=19 Score=34.63 Aligned_cols=122 Identities=10% Similarity=0.204 Sum_probs=66.2
Q ss_pred ceeeEEE-CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEE-CCEEEEEecCCCCceeEEEEeC
Q 014222 208 FFGSCVI-NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVY-EGKWFLKGLGSHRQVLSEAYQP 285 (428)
Q Consensus 208 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~g~lyv~Gg~~~~~~~i~~yd~ 285 (428)
..+++++ +|-|+..|-.+ ..+.+||..+.. .++.+|..-.......+ ++-.|+.-..+.. .+.+||+
T Consensus 350 ~ts~~fHpDgLifgtgt~d-------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~--~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDG--SVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCC--eEEEEEe
Confidence 3344444 56666655543 578899998876 55555542222223333 3334444332222 2678998
Q ss_pred CCCC-eEecCCCCcCCCCCceEEE--CCeEEEEEccCCcEEEEEeCCCCceeeCccccccc
Q 014222 286 ETDS-WFPVYDGMVAGWRNPSASL--NRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHL 343 (428)
Q Consensus 286 ~~~~-W~~~~~~~~~~~~~~~~~~--~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~ 343 (428)
...+ ...+. ...........+ .|...+++|.+ -.|+.|+..+++|+++..+....
T Consensus 419 RKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~~-l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 419 RKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGSD-LQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred hhhcccceee--ccccccceeEEEcCCCCeEEeecce-eEEEEEecccccceeeehhhhcc
Confidence 7665 22221 111111122333 45666666533 36788899999999998766443
No 133
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.90 E-value=18 Score=32.98 Aligned_cols=176 Identities=10% Similarity=0.070 Sum_probs=84.1
Q ss_pred EEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEE---cC-CCCCCccceEEE
Q 014222 186 VIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSF---IS-DMSTAMVPFIGV 261 (428)
Q Consensus 186 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~---~~-~~p~~~~~~~~~ 261 (428)
+.++|..|-.=...-+||..-....+..-.+.....||.+ +..-+|+..+..=+- +. .++.-..+.+.+
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC 151 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCC 151 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCccceeEEE
Confidence 4455543332222233443333323333467788889976 577889887653221 11 222222223333
Q ss_pred E-ECCEEEEEecCCCCceeEEEEeCCCCCeEecCC-CCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCccc
Q 014222 262 V-YEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYD-GMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDS 339 (428)
Q Consensus 262 ~-~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~ 339 (428)
. +++.-.+.|.+ ..++..+|.++.+=...-. +..........-.+++.|+.||-+. ....+|.....=.+ .+
T Consensus 152 ~f~dD~~ilT~SG---D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~q--tF 225 (343)
T KOG0286|consen 152 RFLDDNHILTGSG---DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQ--TF 225 (343)
T ss_pred EEcCCCceEecCC---CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeE--ee
Confidence 3 34433333322 2356789998887443311 0000000000112788999998764 56777877663332 22
Q ss_pred ccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 340 KMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+-..... .......+|.-|+.|..+... -.||+.+
T Consensus 226 ~ghesDI----Nsv~ffP~G~afatGSDD~tc--RlyDlRa 260 (343)
T KOG0286|consen 226 EGHESDI----NSVRFFPSGDAFATGSDDATC--RLYDLRA 260 (343)
T ss_pred ccccccc----ceEEEccCCCeeeecCCCcee--EEEeecC
Confidence 2222222 234445566666766654422 3455444
No 134
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.61 E-value=24 Score=33.95 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=85.3
Q ss_pred EEeCCEEEEEeeeCCCCCCCceEEEEECCCCc--eeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCC
Q 014222 164 VLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK--WHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPN 241 (428)
Q Consensus 164 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 241 (428)
+..++++|+.. . ...++.+|+.+.+ |+....--..........-+|+||+-... ..+++||..
T Consensus 65 ~~~dg~v~~~~-~------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~--------g~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGT-R------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--------GKLYALDAS 129 (370)
T ss_pred EeeCCeEEEec-C------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc--------ceEEEEECC
Confidence 34444898861 1 1278999999887 87643320111111223337887774331 278999995
Q ss_pred --CCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCC--CeEecCCC-CcCCCCCceEEECCeEEEEE
Q 014222 242 --KNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETD--SWFPVYDG-MVAGWRNPSASLNRHLYALD 316 (428)
Q Consensus 242 --t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~lyv~g 316 (428)
+..|+.-.... .+.....+..++.+|+.. ....++++|..+. .|+.-... .........+..++.+|+-.
T Consensus 130 ~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s----~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~ 204 (370)
T COG1520 130 TGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT----DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS 204 (370)
T ss_pred CCcEEEEEecCCC-eEEecCcEEcCcEEEEec----CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec
Confidence 45787654432 333344556678888753 1224678888755 58744332 12222223336677777763
Q ss_pred ccCCcEEEEEeCCCC--ceee
Q 014222 317 CKDGCKIRVYDEVTD--SWSK 335 (428)
Q Consensus 317 G~~~~~i~~yd~~~~--~W~~ 335 (428)
......++.+|+++. .|+.
T Consensus 205 ~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CCCcceEEEEEccCCcEeeee
Confidence 211236899999776 4885
No 135
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=88.40 E-value=7.2 Score=36.26 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=66.6
Q ss_pred CcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeC
Q 014222 206 RHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQP 285 (428)
Q Consensus 206 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~ 285 (428)
|....++-++.|..|....+ ..+.+++..|... +..+..-+.+.++..++|++.|.|.. ..++-.||.
T Consensus 320 rAaVNvVdfd~kyIVsASgD-------RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSS---DntIRlwdi 387 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVSASGD-------RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSS---DNTIRLWDI 387 (499)
T ss_pred hhheeeeccccceEEEecCC-------ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCC---CceEEEEec
Confidence 44444555677855443322 5788888877654 33444445566777899999998753 335677888
Q ss_pred CCCCeEecCCCCcCCCC-CceEEECCeEEEEEccCCcEEEEEeCCC
Q 014222 286 ETDSWFPVYDGMVAGWR-NPSASLNRHLYALDCKDGCKIRVYDEVT 330 (428)
Q Consensus 286 ~~~~W~~~~~~~~~~~~-~~~~~~~~~lyv~gG~~~~~i~~yd~~~ 330 (428)
+.+.=-.+- ..... .-++-++++-.|.|++++ +|.++|..+
T Consensus 388 ~~G~cLRvL---eGHEeLvRciRFd~krIVSGaYDG-kikvWdl~a 429 (499)
T KOG0281|consen 388 ECGACLRVL---EGHEELVRCIRFDNKRIVSGAYDG-KIKVWDLQA 429 (499)
T ss_pred cccHHHHHH---hchHHhhhheeecCceeeeccccc-eEEEEeccc
Confidence 776532221 11111 124568999999999887 677766554
No 136
>smart00284 OLF Olfactomedin-like domains.
Probab=88.26 E-value=19 Score=32.48 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=99.1
Q ss_pred cceEEEEeeCCCCceeEEEEeC----CCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCC
Q 014222 118 EEWIYVIKRDREGKISWHAFDP----IYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSART 193 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~----~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 193 (428)
++.++++.+.......+..|.. ..+++...-.+|.+ -.+-+.++.+| .+|.--. ....+.+||..+
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~---~~GtG~VVYng-slYY~~~------~s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHA---GQGTGVVVYNG-SLYFNKF------NSHDICRFDLTT 103 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCc---cccccEEEECc-eEEEEec------CCccEEEEECCC
Confidence 3567776432222234555522 23333222123332 34667788888 6776522 346899999999
Q ss_pred CceeeCCCCCc------------CCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC----ceEEcCCCCCCccc
Q 014222 194 NKWHRAPDMLR------------RRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN----RWSFISDMSTAMVP 257 (428)
Q Consensus 194 ~~W~~~~~~~~------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~----~W~~~~~~p~~~~~ 257 (428)
++-.....+|. +-.....++-.+-|+||=..... ...-.+-..||.+- +|.. ..+....
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~--~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa- 178 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN--AGKIVISKLNPATLTIENTWIT--TYNKRSA- 178 (255)
T ss_pred CcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC--CCCEEEEeeCcccceEEEEEEc--CCCcccc-
Confidence 87543222322 12223456666667776433211 11123456677653 5665 2232222
Q ss_pred eEEEEECCEEEEEec-CCCCceeEEEEeCCCCCeEecCCCCcCCCCC--ceEE---ECCeEEEEEccCCcEEEEEeCC
Q 014222 258 FIGVVYEGKWFLKGL-GSHRQVLSEAYQPETDSWFPVYDGMVAGWRN--PSAS---LNRHLYALDCKDGCKIRVYDEV 329 (428)
Q Consensus 258 ~~~~~~~g~lyv~Gg-~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~--~~~~---~~~~lyv~gG~~~~~i~~yd~~ 329 (428)
..+.++=|.||+.-. ........+.||..+++=..+. .+....+. +++- -+.+||+.. +..+..||..
T Consensus 179 ~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~-i~f~n~y~~~s~l~YNP~d~~LY~wd---ng~~l~Y~v~ 252 (255)
T smart00284 179 SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLD-IPFENMYEYISMLDYNPNDRKLYAWN---NGHLVHYDIA 252 (255)
T ss_pred cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceee-eeeccccccceeceeCCCCCeEEEEe---CCeEEEEEEE
Confidence 345666789999853 2223334689999887633332 22222222 2332 367888874 2355666653
No 137
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=88.22 E-value=23 Score=33.30 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=73.8
Q ss_pred CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecC
Q 014222 215 NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVY 294 (428)
Q Consensus 215 ~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~ 294 (428)
++.+.+.||.+ +..+.++..+..|--.-.-..--.......++|.+.+.|+ -.+...++.-+....+|+...
T Consensus 75 ~~~l~aTGGgD-------D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd-msG~v~v~~~stg~~~~~~~~ 146 (399)
T KOG0296|consen 75 NNNLVATGGGD-------DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD-MSGKVLVFKVSTGGEQWKLDQ 146 (399)
T ss_pred CCceEEecCCC-------ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC-CCccEEEEEcccCceEEEeec
Confidence 45677778865 5678899988875322111111112334455777655554 333333333344445676542
Q ss_pred CCCcCCCCCceEEE-CCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEE
Q 014222 295 DGMVAGWRNPSASL-NRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLV 373 (428)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v 373 (428)
. .... .-+.-. ...+++.|-.+ ..+|+|...++.-.++ |+-+... ..++-+..+||..+.|-.+ ..+
T Consensus 147 e-~~di--eWl~WHp~a~illAG~~D-GsvWmw~ip~~~~~kv--~~Gh~~~----ct~G~f~pdGKr~~tgy~d--gti 214 (399)
T KOG0296|consen 147 E-VEDI--EWLKWHPRAHILLAGSTD-GSVWMWQIPSQALCKV--MSGHNSP----CTCGEFIPDGKRILTGYDD--GTI 214 (399)
T ss_pred c-cCce--EEEEecccccEEEeecCC-CcEEEEECCCcceeeE--ecCCCCC----cccccccCCCceEEEEecC--ceE
Confidence 1 0000 001111 34566666544 4899999877633332 2212111 2344555667777766543 346
Q ss_pred EeecCCC
Q 014222 374 DVSKSNG 380 (428)
Q Consensus 374 ~~yd~~~ 380 (428)
.+||+.+
T Consensus 215 ~~Wn~kt 221 (399)
T KOG0296|consen 215 IVWNPKT 221 (399)
T ss_pred EEEecCC
Confidence 6777777
No 138
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.16 E-value=23 Score=33.21 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=85.7
Q ss_pred CceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCC---CCcC-
Q 014222 130 GKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPD---MLRR- 205 (428)
Q Consensus 130 ~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~~~~- 205 (428)
+...+..|+...++-....+...++..-..|-+.--++...|++.-.+ ..-.++.||+...+.+++.. ||..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 345788888887776655443222211223433333454688886554 34578889998888877643 3432
Q ss_pred ---CcceeeEE--ECCEEEEEccccCCCCCCCCeEEEE--eCCCCceEEcCCCCC----CccceEEEEECCEEEEEecCC
Q 014222 206 ---RHFFGSCV--INNCLYVAGGENGGVHRSLRSAEVY--DPNKNRWSFISDMST----AMVPFIGVVYEGKWFLKGLGS 274 (428)
Q Consensus 206 ---r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~y--d~~t~~W~~~~~~p~----~~~~~~~~~~~g~lyv~Gg~~ 274 (428)
+...+..+ .+..||+.- +..+++.+| |+.+.+-+.+..-+. ||. ....-.|++.+..+..
T Consensus 241 ~g~~~~aaIhis~dGrFLYasN-------Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~--F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASN-------RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD--FNINPSGRFLIAANQK 311 (346)
T ss_pred CCCCceeEEEECCCCCEEEEec-------CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc--ceeCCCCCEEEEEccC
Confidence 22222221 144678763 223455555 666665544432221 222 2233455555555666
Q ss_pred CCceeEEEEeCCCCCeEecCC
Q 014222 275 HRQVLSEAYQPETDSWFPVYD 295 (428)
Q Consensus 275 ~~~~~i~~yd~~~~~W~~~~~ 295 (428)
+....++.-|.+++.-+++..
T Consensus 312 sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 312 SDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCcEEEEEEcCCCceEEeccc
Confidence 666778888999998887754
No 139
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.09 E-value=23 Score=33.14 Aligned_cols=210 Identities=11% Similarity=0.057 Sum_probs=99.2
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc-eeeCCC----CCcCC
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK-WHRAPD----MLRRR 206 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~----~~~~r 206 (428)
..++.|||.+++-+.... |.. .......-.++.|.+. ...+..+++.+.. ++.+.. .+..|
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~----~~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGG----FSSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCC----cccceeecCCCeEEEE---------ccccEEEeccCCceeEEeccccCCCCcCC
Confidence 478888887665444322 111 1111122222234433 1234556654333 244432 23345
Q ss_pred cceeeEEECCEEEEEccc----cCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECC-EEEEEecCCCCceeEE
Q 014222 207 HFFGSCVINNCLYVAGGE----NGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEG-KWFLKGLGSHRQVLSE 281 (428)
Q Consensus 207 ~~~~~~~~~~~iyv~GG~----~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g-~lyv~Gg~~~~~~~i~ 281 (428)
.+=+.+--+|.+|+---. ..........+++|||. .....+-.-.....+..+..-++ .+|+.- +....++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aD---T~~~~i~ 188 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVAD---TPANRIH 188 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEe---CCCCeEE
Confidence 544555556777765332 11223445589999994 44444332212222333334455 667653 1223466
Q ss_pred EEeCCC------C--CeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceE
Q 014222 282 AYQPET------D--SWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAA 353 (428)
Q Consensus 282 ~yd~~~------~--~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~ 353 (428)
.|+... + .+..... .+..-...++--+|.||+.....+..|.+|+++...-.++ .+|...+ ..
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i-~lP~~~~-------t~ 259 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEI-KLPVKRP-------TN 259 (307)
T ss_pred EEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEE-ECCCCCC-------cc
Confidence 665542 1 1221111 1111111234468999987666667999999994433333 3342221 22
Q ss_pred EEEe---CCeEEEEeCCC
Q 014222 354 LVPL---NGKLCIIRNNM 368 (428)
Q Consensus 354 ~~~~---~~~lyv~GG~~ 368 (428)
++.. .+.|||+....
T Consensus 260 ~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 260 PAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEeCCCcCEEEEEecCC
Confidence 2222 37888886543
No 140
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=87.74 E-value=26 Score=33.42 Aligned_cols=80 Identities=8% Similarity=-0.036 Sum_probs=43.8
Q ss_pred hCcccceEEEEeeC------CCCceeEEEEeCCCCceEe-CCCCCCCC--ccccccEEE-EEeCCEEEEEeeeCCCCCCC
Q 014222 114 LGIAEEWIYVIKRD------REGKISWHAFDPIYQLWQP-LPPIPKEY--SEALGFGCA-VLSGCHLYLFGGKDPLKGSM 183 (428)
Q Consensus 114 ~~~~~~~l~v~gg~------~~~~~~~~~yd~~~~~W~~-l~~~~~~~--~~r~~~~~~-~~~~~~lyv~GG~~~~~~~~ 183 (428)
++.-+..||+.... +.....+.+||+.+.+-.. ++.-+.|. ........+ .-+|..+|+.- ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-----~~p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-----FSPS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-----CCCC
Confidence 33446788888741 1234579999999887532 22111110 001112223 33444677761 1135
Q ss_pred ceEEEEECCCCceee
Q 014222 184 RRVIFYSARTNKWHR 198 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~ 198 (428)
+.+-+.|..+++-..
T Consensus 128 ~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 128 PAVGVVDLEGKAFVR 142 (352)
T ss_pred CEEEEEECCCCcEEE
Confidence 689999999887554
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.59 E-value=20 Score=31.90 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=51.7
Q ss_pred EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCC---CccceEEE-EE-CCEEEEEecCCCCceeEEEEeCCCCCeE
Q 014222 217 CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMST---AMVPFIGV-VY-EGKWFLKGLGSHRQVLSEAYQPETDSWF 291 (428)
Q Consensus 217 ~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~---~~~~~~~~-~~-~g~lyv~Gg~~~~~~~i~~yd~~~~~W~ 291 (428)
+-++.||.+ +.|.+++...++|..-..+.. -....+-+ .+ ..+-|+..+...+...|+.-+.+.+.|+
T Consensus 176 krlvSgGcD-------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 176 KRLVSGGCD-------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred ceeeccCCc-------cceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 457778875 455555555667854332210 00000000 01 1223333222223333455555667887
Q ss_pred ec--CCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCC-ceeeCcc
Q 014222 292 PV--YDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTD-SWSKHID 338 (428)
Q Consensus 292 ~~--~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~-~W~~v~~ 338 (428)
.- ..++. ......-.+-|.+..++|.+ +.+..|-++.+ +|.+++.
T Consensus 249 ~tll~~f~~-~~w~vSWS~sGn~LaVs~Gd-Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 249 KTLLEEFPD-VVWRVSWSLSGNILAVSGGD-NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ccccccCCc-ceEEEEEeccccEEEEecCC-cEEEEEEeCCCCcEEEccc
Confidence 53 22222 22222223444444444333 36777766554 8999865
No 142
>PRK01029 tolB translocation protein TolB; Provisional
Probab=87.17 E-value=32 Score=33.88 Aligned_cols=195 Identities=9% Similarity=-0.071 Sum_probs=87.9
Q ss_pred CceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCce---EEcCCCCCCccceE
Q 014222 183 MRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRW---SFISDMSTAMVPFI 259 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W---~~~~~~p~~~~~~~ 259 (428)
..++|++|..+++-+.+..++.........--+.+|.+..... + ...--+..||..+... +.+...........
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-g--~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRY-G--NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP 286 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCC-C--CcceeEEEeecccCCCCcceEeecCCCCCcCCe
Confidence 3589999999888777766544333221111233554443211 1 1011122255543211 11111111111112
Q ss_pred EEEECCEEEEEecCCCCceeEEEEeCCCC-C-eEecCCCCcCCCCCceEEECCe-EEEEEccC-CcEEEEEeCCCCceee
Q 014222 260 GVVYEGKWFLKGLGSHRQVLSEAYQPETD-S-WFPVYDGMVAGWRNPSASLNRH-LYALDCKD-GCKIRVYDEVTDSWSK 335 (428)
Q Consensus 260 ~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~-~-W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~-~~~i~~yd~~~~~W~~ 335 (428)
...-+|+..++.........++.++.... . =..+.. .......+...-+|+ |++..... ...|++||+++++.+.
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 33346653333222222334667665421 1 122221 111111122233444 55444322 2479999999998887
Q ss_pred CcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCCCCCCccccccceec
Q 014222 336 HIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNGERGASAEHLWETIS 394 (428)
Q Consensus 336 v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~~ 394 (428)
+...+.. . ........+..|++.........++.+|..+ ...+.+.
T Consensus 366 Lt~~~~~---~---~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-------g~~~~Lt 411 (428)
T PRK01029 366 LTTSPEN---K---ESPSWAIDSLHLVYSAGNSNESELYLISLIT-------KKTRKIV 411 (428)
T ss_pred ccCCCCC---c---cceEECCCCCEEEEEECCCCCceEEEEECCC-------CCEEEee
Confidence 7542211 1 1122222334565555444456788899888 6666654
No 143
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=86.57 E-value=26 Score=32.17 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=51.2
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeE
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSC 212 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 212 (428)
.+..||..++.-..+..-..+ .-++........++.||++. .+..+|+.... .......+..-+++.
T Consensus 76 ~vr~~Dln~~~~~~igth~~~-----i~ci~~~~~~~~vIsgsWD~------~ik~wD~R~~~--~~~~~d~~kkVy~~~ 142 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEG-----IRCIEYSYEVGCVISGSWDK------TIKFWDPRNKV--VVGTFDQGKKVYCMD 142 (323)
T ss_pred eEEEEEecCCcceeeccCCCc-----eEEEEeeccCCeEEEcccCc------cEEEEeccccc--cccccccCceEEEEe
Confidence 688899999886666543332 11222221213778888863 57788887622 112222223333444
Q ss_pred EECCEEEEEccccCCCCCCCCeEEEEeCCCCc
Q 014222 213 VINNCLYVAGGENGGVHRSLRSAEVYDPNKNR 244 (428)
Q Consensus 213 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~ 244 (428)
+.+++| ++|+.+ ..+..||+.+..
T Consensus 143 v~g~~L-vVg~~~-------r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 143 VSGNRL-VVGTSD-------RKVLIYDLRNLD 166 (323)
T ss_pred ccCCEE-EEeecC-------ceEEEEEccccc
Confidence 445544 455543 689999997653
No 144
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.29 E-value=45 Score=34.64 Aligned_cols=137 Identities=10% Similarity=0.078 Sum_probs=73.8
Q ss_pred eEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceE-EcCCCCCCccceEEEE-
Q 014222 185 RVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWS-FISDMSTAMVPFIGVV- 262 (428)
Q Consensus 185 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~~~~~~~~~- 262 (428)
++.+|+-.+++.-....-...|.......-+|.+.+.|+.+ ..|.+||..+.--. ..... -.+.+++.
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~vTFteH---ts~Vt~v~f 400 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-------GKVKVWNTQSGFCFVTFTEH---TSGVTAVQF 400 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-------CcEEEEeccCceEEEEeccC---CCceEEEEE
Confidence 55555544444332222223333333333477888888764 57888888765321 12221 12223222
Q ss_pred -ECCEEEEEecCCCCceeEEEEeCCCC-CeEecCCCCcCCCCCceEEEC--CeEEEEEccCCcEEEEEeCCCCceeeC
Q 014222 263 -YEGKWFLKGLGSHRQVLSEAYQPETD-SWFPVYDGMVAGWRNPSASLN--RHLYALDCKDGCKIRVYDEVTDSWSKH 336 (428)
Q Consensus 263 -~~g~lyv~Gg~~~~~~~i~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~--~~lyv~gG~~~~~i~~yd~~~~~W~~v 336 (428)
..|...+...- .-++-.+|...- .+..... |.+...+++.++ |.|.+.|+.+.-.|++++.++++--.+
T Consensus 401 ~~~g~~llssSL---DGtVRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 401 TARGNVLLSSSL---DGTVRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred EecCCEEEEeec---CCeEEeeeecccceeeeecC--CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 24443333211 113556776543 2333332 233344555666 999999998877899999999877665
No 145
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.64 E-value=56 Score=35.16 Aligned_cols=174 Identities=10% Similarity=0.028 Sum_probs=80.5
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEE-eCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVL-SGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS 211 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 211 (428)
.+.+||..+++-. ..+... ...-.+++.. .++.+++.||.++ .+.+||..+..-.. .+.....-..+
T Consensus 556 ~v~lWd~~~~~~~--~~~~~H--~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~--~~~~~~~v~~v 623 (793)
T PLN00181 556 VVQVWDVARSQLV--TEMKEH--EKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIG--TIKTKANICCV 623 (793)
T ss_pred eEEEEECCCCeEE--EEecCC--CCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEE--EEecCCCeEEE
Confidence 5677787665422 122111 1122344443 1225777777543 57888887653211 11111111111
Q ss_pred EE--ECCEEEEEccccCCCCCCCCeEEEEeCCCCc--eEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCC
Q 014222 212 CV--INNCLYVAGGENGGVHRSLRSAEVYDPNKNR--WSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 212 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
.. -++..++.|+.+ ..+.+||..+.. ...+..-... -..+...++..++.|+.+. .+-.||..+
T Consensus 624 ~~~~~~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~~~~~lvs~s~D~---~ikiWd~~~ 691 (793)
T PLN00181 624 QFPSESGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMIGHSKT--VSYVRFVDSSTLVSSSTDN---TLKLWDLSM 691 (793)
T ss_pred EEeCCCCCEEEEEeCC-------CeEEEEECCCCCccceEecCCCCC--EEEEEEeCCCEEEEEECCC---EEEEEeCCC
Confidence 11 246777777754 578999987643 1122111111 1122234666556655322 356777754
Q ss_pred C----CeEecCCCCcCCCCCc--eEEECCeEEEEEccCCcEEEEEeCCCC
Q 014222 288 D----SWFPVYDGMVAGWRNP--SASLNRHLYALDCKDGCKIRVYDEVTD 331 (428)
Q Consensus 288 ~----~W~~~~~~~~~~~~~~--~~~~~~~lyv~gG~~~~~i~~yd~~~~ 331 (428)
. .|..+........... +...++.+++.|+.++ .+.+|+....
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-~v~iw~~~~~ 740 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-EVFVYHKAFP 740 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-EEEEEECCCC
Confidence 3 2332221110000001 1223566667776554 7888886543
No 146
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.28 E-value=22 Score=31.46 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=76.5
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcc-eeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHF-FGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~ 262 (428)
+.+-.+||....-.+.-.-. .+-- -+....++.-+..||-+ +.+.+||..|.+-.. .+..-.....++.
T Consensus 39 rtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dnskf~s~GgD-------k~v~vwDV~TGkv~R--r~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNSKFASCGGD-------KAVQVWDVNTGKVDR--RFRGHLAQVNTVR 108 (307)
T ss_pred ceEEeecccccceeeeecCC-CceeeeccccccccccccCCCC-------ceEEEEEcccCeeee--ecccccceeeEEE
Confidence 46777888776544321111 0100 12334466666666643 689999999875321 1111111122344
Q ss_pred ECC--EEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCcee
Q 014222 263 YEG--KWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWS 334 (428)
Q Consensus 263 ~~g--~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~ 334 (428)
+|+ .+.+.|+.. .++.+||-..+..+.+.-.-...-....+.+.+..++.|-.++ .+..||+...+-.
T Consensus 109 fNeesSVv~SgsfD---~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG-tvRtydiR~G~l~ 178 (307)
T KOG0316|consen 109 FNEESSVVASGSFD---SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-TVRTYDIRKGTLS 178 (307)
T ss_pred ecCcceEEEecccc---ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC-cEEEEEeecceee
Confidence 544 344445432 2467888888887766543333333446778888888776665 7899998776543
No 147
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=84.71 E-value=29 Score=31.13 Aligned_cols=195 Identities=13% Similarity=0.208 Sum_probs=89.6
Q ss_pred EEEeCCEEEE--Eeee-CCCCCCCceEEEEECC-CCceee---CCCC----Cc-CCcceeeEEECCEEEEEccccCCCCC
Q 014222 163 AVLSGCHLYL--FGGK-DPLKGSMRRVIFYSAR-TNKWHR---APDM----LR-RRHFFGSCVINNCLYVAGGENGGVHR 230 (428)
Q Consensus 163 ~~~~~~~lyv--~GG~-~~~~~~~~~v~~yd~~-t~~W~~---~~~~----~~-~r~~~~~~~~~~~iyv~GG~~~~~~~ 230 (428)
.+.++ .||. ++|. .+. ..+.-.|+=+-. -++|+. +.++ |. .-..+++.+++++||++--...-...
T Consensus 22 FVy~~-VIYAPfM~~~RHGv-~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~ 99 (367)
T PF12217_consen 22 FVYDN-VIYAPFMAGDRHGV-DNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASN 99 (367)
T ss_dssp EEETT-EEEEEEEEESSSSS-TT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT-
T ss_pred eeecC-eeecccccccccCc-cceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhh
Confidence 45555 5664 2332 222 245556665554 346764 2222 22 23345788999999988554322122
Q ss_pred CCCeEEEEe---CCCCceEE--cCCCCC-------CccceEEEEECCEEEEEec---CCCCceeEEEEeCCCCCe-----
Q 014222 231 SLRSAEVYD---PNKNRWSF--ISDMST-------AMVPFIGVVYEGKWFLKGL---GSHRQVLSEAYQPETDSW----- 290 (428)
Q Consensus 231 ~~~~v~~yd---~~t~~W~~--~~~~p~-------~~~~~~~~~~~g~lyv~Gg---~~~~~~~i~~yd~~~~~W----- 290 (428)
.+...+.|| ...+.|+. ++..+. .-.-|+-+.+++.=|.+|. +.........|-+ +.|
T Consensus 100 km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs--~~~~sp~~ 177 (367)
T PF12217_consen 100 KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS--DAFASPGV 177 (367)
T ss_dssp -EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET--TTTT-TT-
T ss_pred hhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec--ccccCCcc
Confidence 333445554 46778865 334443 2224677788888888874 3333323223322 222
Q ss_pred ---EecCCCCcCCCCCceE-EECCeEEEEEcc-----CCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeE
Q 014222 291 ---FPVYDGMVAGWRNPSA-SLNRHLYALDCK-----DGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKL 361 (428)
Q Consensus 291 ---~~~~~~~~~~~~~~~~-~~~~~lyv~gG~-----~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~l 361 (428)
..+++.......-+++ ..+|.||+.--. -++.+.+-+.....|+.+.- |...-. ...-....++.|
T Consensus 178 ~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf-p~nvHh----tnlPFakvgD~l 252 (367)
T PF12217_consen 178 FVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF-PNNVHH----TNLPFAKVGDVL 252 (367)
T ss_dssp -EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT---S----S---EEEETTEE
T ss_pred eeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc-cccccc----cCCCceeeCCEE
Confidence 2222211111112233 479999999521 23567888888889997642 222111 123356789999
Q ss_pred EEEeC
Q 014222 362 CIIRN 366 (428)
Q Consensus 362 yv~GG 366 (428)
|+||-
T Consensus 253 ~mFgs 257 (367)
T PF12217_consen 253 YMFGS 257 (367)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99984
No 148
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.88 E-value=45 Score=32.55 Aligned_cols=148 Identities=9% Similarity=-0.041 Sum_probs=81.9
Q ss_pred CceEEEEECCCC-----ceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCc---eE-EcCCCCC
Q 014222 183 MRRVIFYSARTN-----KWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNR---WS-FISDMST 253 (428)
Q Consensus 183 ~~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~---W~-~~~~~p~ 253 (428)
.+.+++.+.... .|+.+.+- ..-....+...++.+|+.... +.....+..++..+.. |. .+.+-..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~----~a~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTND----DAPNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-T----T-TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCC----CCCCcEEEEecccccccccceeEEcCCCC
Confidence 378999999875 67776442 222333455568999998763 2334688888888765 66 4444333
Q ss_pred CccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEE---ECCeEE-EEEccCC-cEEEEEeC
Q 014222 254 AMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSAS---LNRHLY-ALDCKDG-CKIRVYDE 328 (428)
Q Consensus 254 ~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~ly-v~gG~~~-~~i~~yd~ 328 (428)
...-..+...++.|++.--. .....+.+||+. ..|.......+......... -.+.++ .+.+... ..++.||+
T Consensus 326 ~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 326 DVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp SEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred ceeEEEEEEECCEEEEEEEE-CCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 33445566678888876432 223457889998 33333322122211111111 123443 3344433 47999999
Q ss_pred CCCceeeCc
Q 014222 329 VTDSWSKHI 337 (428)
Q Consensus 329 ~~~~W~~v~ 337 (428)
++++.+.+.
T Consensus 404 ~t~~~~~~k 412 (414)
T PF02897_consen 404 ATGELTLLK 412 (414)
T ss_dssp TTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999877653
No 149
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.83 E-value=24 Score=29.42 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=48.7
Q ss_pred EEECCEEEEEecCCCCce--eEEEEeCCCCCe-EecCCCCcCCC-CCc---e-EEECCeEEEEEc-cCC--cEEEEEe--
Q 014222 261 VVYEGKWFLKGLGSHRQV--LSEAYQPETDSW-FPVYDGMVAGW-RNP---S-ASLNRHLYALDC-KDG--CKIRVYD-- 327 (428)
Q Consensus 261 ~~~~g~lyv~Gg~~~~~~--~i~~yd~~~~~W-~~~~~~~~~~~-~~~---~-~~~~~~lyv~gG-~~~--~~i~~yd-- 327 (428)
+.+||.+|-++....... .|.+||..++++ ..++. |.... ... . ++.++.|.++.- ... -.||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~l-P~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPL-PFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECC-CCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 568999998865433322 589999999999 55543 33322 112 2 233778888753 222 3566665
Q ss_pred -CCCCceeeCcccc
Q 014222 328 -EVTDSWSKHIDSK 340 (428)
Q Consensus 328 -~~~~~W~~v~~~~ 340 (428)
....+|+++-.++
T Consensus 81 ~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 81 GYGKESWTKLFTID 94 (164)
T ss_pred ccCcceEEEEEEEe
Confidence 2367899986544
No 150
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.72 E-value=26 Score=34.83 Aligned_cols=173 Identities=11% Similarity=0.089 Sum_probs=92.1
Q ss_pred eEEEEECCCCceeeCCCCCcCCcceeeEEE--CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCC-CccceEEE
Q 014222 185 RVIFYSARTNKWHRAPDMLRRRHFFGSCVI--NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMST-AMVPFIGV 261 (428)
Q Consensus 185 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~~~~~~~~ 261 (428)
.++.++-.+..-..+.++. +...+.+.. +|...++|-.+ ..|++||..+.+ .+..+.. .....++.
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-------g~v~iwD~~~~k--~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-------GTVQIWDVKEQK--KTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-------CeEEEEehhhcc--ccccccCCcCceeEEE
Confidence 5777777777766665554 444444443 46777776543 589999987664 2233322 12223344
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceE---E-ECCeEEEEEccCCcEEEEEeCCCCceeeCc
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSA---S-LNRHLYALDCKDGCKIRVYDEVTDSWSKHI 337 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~---~-~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~ 337 (428)
.-++.+...|.... .+..+|....+=. +.. .. ....-.| . .++.....||.+ +.+.+||.....+..
T Consensus 267 aW~~~~lssGsr~~---~I~~~dvR~~~~~-~~~-~~-~H~qeVCgLkws~d~~~lASGgnD-N~~~Iwd~~~~~p~~-- 337 (484)
T KOG0305|consen 267 AWNSSVLSSGSRDG---KILNHDVRISQHV-VST-LQ-GHRQEVCGLKWSPDGNQLASGGND-NVVFIWDGLSPEPKF-- 337 (484)
T ss_pred eccCceEEEecCCC---cEEEEEEecchhh-hhh-hh-cccceeeeeEECCCCCeeccCCCc-cceEeccCCCccccE--
Confidence 45777777775432 2456665433200 000 11 1111122 2 245555555544 689999984333222
Q ss_pred ccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 338 DSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
......... .+.+-+.....|+..||......+..||..+
T Consensus 338 ~~~~H~aAV---KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 338 TFTEHTAAV---KALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred EEeccceee---eEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 111121111 2234445678899999988777788888777
No 151
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.47 E-value=67 Score=34.29 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=21.7
Q ss_pred eEEEEECCEEEEEecCCC------CceeEEEEeCCCCC--eEec
Q 014222 258 FIGVVYEGKWFLKGLGSH------RQVLSEAYQPETDS--WFPV 293 (428)
Q Consensus 258 ~~~~~~~g~lyv~Gg~~~------~~~~i~~yd~~~~~--W~~~ 293 (428)
.+-++.++++|+-+.... ..-.+..||.++++ |+.-
T Consensus 310 s~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 310 SPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 345667888887432111 12347899998874 7643
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=83.42 E-value=37 Score=31.23 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=84.9
Q ss_pred eEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEEC
Q 014222 185 RVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYE 264 (428)
Q Consensus 185 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 264 (428)
.+-.||..++.-+.. +.....-..++..+..-.+.||.+ ..+-.||..+..=..+..--.+.....-....
T Consensus 36 slrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~d-------g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLD-------GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred cEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccC-------ceEEEEEecCCcceeeccCCCceEEEEeeccC
Confidence 467888877732211 111111123445555555567764 58899999988755554322221111111113
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceee-Cccccccc
Q 014222 265 GKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSK-HIDSKMHL 343 (428)
Q Consensus 265 g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~-v~~~~~~~ 343 (428)
|. .|.||-. .++..+|+....= +....... ...+..+.+...++|+.+ ..+.+||..+..=-. .-.-....
T Consensus 107 ~~-vIsgsWD---~~ik~wD~R~~~~--~~~~d~~k-kVy~~~v~g~~LvVg~~~-r~v~iyDLRn~~~~~q~reS~lky 178 (323)
T KOG1036|consen 107 GC-VISGSWD---KTIKFWDPRNKVV--VGTFDQGK-KVYCMDVSGNRLVVGTSD-RKVLIYDLRNLDEPFQRRESSLKY 178 (323)
T ss_pred Ce-EEEcccC---ccEEEEecccccc--ccccccCc-eEEEEeccCCEEEEeecC-ceEEEEEcccccchhhhcccccee
Confidence 33 3444422 2467888876211 11111111 112334566666777654 489999987653211 11100000
Q ss_pred CCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCC
Q 014222 344 GNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSN 379 (428)
Q Consensus 344 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~ 379 (428)
. .-+.....++.=|+++-.++.-.++.+|+.
T Consensus 179 -q----tR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 179 -Q----TRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred -E----EEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 0 012233336677777776666667777766
No 153
>PTZ00421 coronin; Provisional
Probab=83.06 E-value=55 Score=32.97 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=50.1
Q ss_pred CEEEEEccccCCCCCCCCeEEEEeCCCCceE-EcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeE-ec
Q 014222 216 NCLYVAGGENGGVHRSLRSAEVYDPNKNRWS-FISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWF-PV 293 (428)
Q Consensus 216 ~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~-~~ 293 (428)
+.+++.||.+ ..+.+||..+.+-. .+...... .......-++.+.+.|+.+ ..+..||+.+++-. .+
T Consensus 138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h~~~-V~sla~spdG~lLatgs~D---g~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTTSKD---KKLNIIDPRDGTIVSSV 206 (493)
T ss_pred CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCCCCc-eEEEEEECCCCEEEEecCC---CEEEEEECCCCcEEEEE
Confidence 3567777764 57899999876432 12111111 1111222367776666543 24678999876522 12
Q ss_pred CCCCcCCCCCceE-EEC-CeEEEEEcc--CCcEEEEEeCCCC
Q 014222 294 YDGMVAGWRNPSA-SLN-RHLYALDCK--DGCKIRVYDEVTD 331 (428)
Q Consensus 294 ~~~~~~~~~~~~~-~~~-~~lyv~gG~--~~~~i~~yd~~~~ 331 (428)
...... ....++ ..+ +.|+..|.. ....|.+||..+.
T Consensus 207 ~~H~~~-~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 207 EAHASA-KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ecCCCC-cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 111110 001111 123 344444422 2247999998653
No 154
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=82.15 E-value=54 Score=32.27 Aligned_cols=150 Identities=7% Similarity=-0.094 Sum_probs=77.6
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS 211 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 211 (428)
..++.+|..++.=..+...+.. ..+-..+-+|.+|.+..-.+ ...+++++|..+++-.++......-...+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~----~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGN----NGAPAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLTNGFGINTSPSW 289 (425)
T ss_pred ceEEEEeccCCccceeeccCCc----cCCccCCCCCCEEEEEECCC----CCccEEEEcCCCCcceecccCCccccCccC
Confidence 4566667666655444443221 11112223343343333222 345899999988874444443322222222
Q ss_pred EEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC-e
Q 014222 212 CVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS-W 290 (428)
Q Consensus 212 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~-W 290 (428)
.--+.+|+..... .....+++||++..+=+.+..-..... .....-+|+.+++-+.......+..+|+.++. |
T Consensus 290 spdG~~ivf~Sdr-----~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~ 363 (425)
T COG0823 290 SPDGSKIVFTSDR-----GGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI 363 (425)
T ss_pred CCCCCEEEEEeCC-----CCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcE
Confidence 2334455544222 123589999998886555543221111 33444566666664322223558899998877 8
Q ss_pred EecCC
Q 014222 291 FPVYD 295 (428)
Q Consensus 291 ~~~~~ 295 (428)
+.+..
T Consensus 364 ~~lt~ 368 (425)
T COG0823 364 RILTS 368 (425)
T ss_pred EEccc
Confidence 87764
No 155
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.56 E-value=39 Score=30.18 Aligned_cols=102 Identities=12% Similarity=0.249 Sum_probs=52.4
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeC----------------CCCCcCCcceeeEEECCEEEEEccccCCCCCCC
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRA----------------PDMLRRRHFFGSCVINNCLYVAGGENGGVHRSL 232 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~----------------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 232 (428)
+-++.||.+ .+-.+|.||.. +|..- |....+++..+.+..++++++.
T Consensus 176 krlvSgGcD----n~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw----------- 238 (299)
T KOG1332|consen 176 KRLVSGGCD----NLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW----------- 238 (299)
T ss_pred ceeeccCCc----cceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE-----------
Confidence 346777765 34456666653 66542 2223345554455545544443
Q ss_pred CeEEEEeCCCCceEE--cCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCC-CCCeEecCC
Q 014222 233 RSAEVYDPNKNRWSF--ISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPE-TDSWFPVYD 295 (428)
Q Consensus 233 ~~v~~yd~~t~~W~~--~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~-~~~W~~~~~ 295 (428)
.-+-+...|+. +.++|.+....+=...++.|-|.||++ .+.++-.. .++|.++..
T Consensus 239 ----t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN----kvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 ----TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN----KVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ----EecCccCcccccccccCCcceEEEEEeccccEEEEecCCc----EEEEEEeCCCCcEEEccc
Confidence 22334556753 345555555444444455555555543 24455444 459998753
No 156
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.51 E-value=41 Score=30.42 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=86.9
Q ss_pred cccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCcee---eCCCCC---------cCCcceeeEEECCEEEEEcccc
Q 014222 158 LGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWH---RAPDML---------RRRHFFGSCVINNCLYVAGGEN 225 (428)
Q Consensus 158 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~~---------~~r~~~~~~~~~~~iyv~GG~~ 225 (428)
.+-+.++.+| -+|--- ...+.+.+||..+++-. .++... .+-.....++-.+-|+||=...
T Consensus 70 ~GtG~vVYng-slYY~~------~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~ 142 (250)
T PF02191_consen 70 QGTGHVVYNG-SLYYNK------YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE 142 (250)
T ss_pred ccCCeEEECC-cEEEEe------cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC
Confidence 3556677777 466441 14678999999988644 454321 1222244666677788886553
Q ss_pred CCCCCCCCeEEEEeCCC----CceEEcCCCCCCccceEEEEECCEEEEEecCCCC-ceeEEEEeCCCCCeEecCCCCcCC
Q 014222 226 GGVHRSLRSAEVYDPNK----NRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHR-QVLSEAYQPETDSWFPVYDGMVAG 300 (428)
Q Consensus 226 ~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~-~~~i~~yd~~~~~W~~~~~~~~~~ 300 (428)
+. ...-.+-..|+.+ .+|.. ..+... ...+.++-|.||++...... ....+.||..+++=..+.-.....
T Consensus 143 ~~--~g~ivvskld~~tL~v~~tw~T--~~~k~~-~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~ 217 (250)
T PF02191_consen 143 DN--NGNIVVSKLDPETLSVEQTWNT--SYPKRS-AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNP 217 (250)
T ss_pred CC--CCcEEEEeeCcccCceEEEEEe--ccCchh-hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccc
Confidence 21 1113455567765 36653 233322 23466677899999654333 334689999988765543222222
Q ss_pred C-CCceEE---ECCeEEEEEccCCcEEEEEeC
Q 014222 301 W-RNPSAS---LNRHLYALDCKDGCKIRVYDE 328 (428)
Q Consensus 301 ~-~~~~~~---~~~~lyv~gG~~~~~i~~yd~ 328 (428)
. ...++. .+.+||+..- ..+..|+.
T Consensus 218 ~~~~~~l~YNP~dk~LY~wd~---G~~v~Y~v 246 (250)
T PF02191_consen 218 YGNISMLSYNPRDKKLYAWDN---GYQVTYDV 246 (250)
T ss_pred cCceEeeeECCCCCeEEEEEC---CeEEEEEE
Confidence 1 222333 3678888752 24555654
No 157
>PTZ00420 coronin; Provisional
Probab=81.00 E-value=70 Score=32.81 Aligned_cols=101 Identities=8% Similarity=0.037 Sum_probs=49.0
Q ss_pred EEEEEccccCCCCCCCCeEEEEeCCCCceE-EcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEe-cC
Q 014222 217 CLYVAGGENGGVHRSLRSAEVYDPNKNRWS-FISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFP-VY 294 (428)
Q Consensus 217 ~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~-~~ 294 (428)
.+++.||.+ ..+.+||..+.+=. .+. .+.. ........+|.+++.++.. ..+..||+.+.+=.. +.
T Consensus 139 ~iLaSgS~D-------gtIrIWDl~tg~~~~~i~-~~~~-V~SlswspdG~lLat~s~D---~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 139 YIMCSSGFD-------SFVNIWDIENEKRAFQIN-MPKK-LSSLKWNIKGNLLSGTCVG---KHMHIIDPRKQEIASSFH 206 (568)
T ss_pred eEEEEEeCC-------CeEEEEECCCCcEEEEEe-cCCc-EEEEEECCCCCEEEEEecC---CEEEEEECCCCcEEEEEe
Confidence 455566653 57889999876411 111 1111 1111222367777766532 246789998764211 11
Q ss_pred CCCcCCCCCceEE-----ECCeEEEEEccCC---cEEEEEeCCC
Q 014222 295 DGMVAGWRNPSAS-----LNRHLYALDCKDG---CKIRVYDEVT 330 (428)
Q Consensus 295 ~~~~~~~~~~~~~-----~~~~lyv~gG~~~---~~i~~yd~~~ 330 (428)
.+.. ......+. -++..++.+|.+. ..|.+||..+
T Consensus 207 gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 IHDG-GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred cccC-CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 1110 00001111 2445555555543 3699999874
No 158
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=58 Score=31.50 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=82.1
Q ss_pred ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEec
Q 014222 214 INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPV 293 (428)
Q Consensus 214 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~ 293 (428)
.++++|+..+. .+.+.++|..+++-.........-........++.+|+..... ....+...|..+++=...
T Consensus 84 ~~~~vyv~~~~-------~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 84 AGNKVYVTTGD-------SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNKVTAT 155 (381)
T ss_pred CCCeEEEecCC-------CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCeEEEE
Confidence 46789998764 3688999976664332222221111222233466899985432 344578999988864443
Q ss_pred CCCCcCCCCCceE-EECCeEEEEEccCCcEEEEEeCCCCceeeCcccc--cccCCcccccceEEEEeCCeEEEEeCCCeE
Q 014222 294 YDGMVAGWRNPSA-SLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSK--MHLGNSRALEAAALVPLNGKLCIIRNNMSI 370 (428)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~--~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 370 (428)
.+--... ...++ .-++++|+.. ...+.+..+|.+++.=.. .... ...... -....+-..+.++|+.-.....
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~-~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~--P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTN-SDDNTVSVIDTSGNSVVR-GSVGSLVGVGTG--PAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEe-cCCCeEEEEeCCCcceec-cccccccccCCC--CceEEECCCCCEEEEEeccCCC
Confidence 1100011 11122 2456699987 334589999988775332 2100 111111 0123333456679988665433
Q ss_pred EEEEeecCCC
Q 014222 371 SLVDVSKSNG 380 (428)
Q Consensus 371 ~~v~~yd~~~ 380 (428)
..+...|..+
T Consensus 231 ~~v~~id~~~ 240 (381)
T COG3391 231 NNVLKIDTAT 240 (381)
T ss_pred ceEEEEeCCC
Confidence 4566666665
No 159
>PRK01742 tolB translocation protein TolB; Provisional
Probab=79.31 E-value=67 Score=31.59 Aligned_cols=163 Identities=11% Similarity=-0.018 Sum_probs=79.1
Q ss_pred ceeEEEEeCCCCceEeCCCCCCCCccccccEEEE-EeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcce
Q 014222 131 KISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAV-LSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFF 209 (428)
Q Consensus 131 ~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 209 (428)
...++.+|..+++-..+...+.. ....+. -+|.+|++....++ ..++|.+|..++..+.+..-...-..
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~-----~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~- 296 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGH-----NGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGNNTE- 296 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCc-----cCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCCcCC-
Confidence 45688888887766555544321 112222 34534444332222 24689999988877766442211111
Q ss_pred eeEEECCE-EEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCE-EEEEecCCCCceeEEEEeCCC
Q 014222 210 GSCVINNC-LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGK-WFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 210 ~~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~-lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
....-+++ |++..... + ...++.+|..+..-+.+.. .. . .....-+|+ |++.++ ..+..+|..+
T Consensus 297 ~~wSpDG~~i~f~s~~~-g----~~~I~~~~~~~~~~~~l~~--~~-~-~~~~SpDG~~ia~~~~-----~~i~~~Dl~~ 362 (429)
T PRK01742 297 PSWSPDGQSILFTSDRS-G----SPQVYRMSASGGGASLVGG--RG-Y-SAQISADGKTLVMING-----DNVVKQDLTS 362 (429)
T ss_pred EEECCCCCEEEEEECCC-C----CceEEEEECCCCCeEEecC--CC-C-CccCCCCCCEEEEEcC-----CCEEEEECCC
Confidence 11122444 55443221 1 2466677766554333321 11 1 112223554 444332 2356789999
Q ss_pred CCeEecCCCCcCCCCCceEEECCeEEEEEccC
Q 014222 288 DSWFPVYDGMVAGWRNPSASLNRHLYALDCKD 319 (428)
Q Consensus 288 ~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~ 319 (428)
+++..+.... ........-+++.++++..+
T Consensus 363 g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 363 GSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 9888764321 11222334466666665443
No 160
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=79.13 E-value=35 Score=32.80 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=60.3
Q ss_pred CCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccc---cccCCcccccceEEEEeCCeEEE
Q 014222 287 TDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSK---MHLGNSRALEAAALVPLNGKLCI 363 (428)
Q Consensus 287 ~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~---~~~~~~~~~~~~~~~~~~~~lyv 363 (428)
.+.|+.+.. ......-.+.++|++|++.-. ..++++|.+-. =.+++... +..+.. ....-++...|+|++
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~--G~l~~i~~~l~-i~~v~~~i~~~~~~g~~--~~~~yLVEs~GdLLm 261 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI--GIVYWINSDLE-FSRFGTSLDENITDGCW--TGDRRFVECCGELYI 261 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcCC--CeEEEEecCCc-eeeecceecccccCCcc--cCceeEEEECCEEEE
Confidence 389999963 223334478899999999532 36788774321 12222110 000110 012446777888998
Q ss_pred EeCCC---------------eEEEEEee--cCCCCCCCccccccceeccCCccccchh
Q 014222 364 IRNNM---------------SISLVDVS--KSNGERGASAEHLWETISGKGQFKTLVT 404 (428)
Q Consensus 364 ~GG~~---------------~~~~v~~y--d~~~~~~~~~~~~W~~~~~~~~~~~f~~ 404 (428)
+.... ....+.+| |.+. .+|.++..+.....|+.
T Consensus 262 V~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~-------~~WveV~sLgd~aLFlG 312 (373)
T PLN03215 262 VERLPKESTWKRKADGFEYSRTVGFKVYKFDDEL-------AKWMEVKTLGDNAFVMA 312 (373)
T ss_pred EEEEccCcccccccccccccceeEEEEEEEcCCC-------CcEEEecccCCeEEEEE
Confidence 86521 12344555 6556 89999999987655654
No 161
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.53 E-value=55 Score=30.16 Aligned_cols=173 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred ceeeCCCCCc--CCcceeeEEECCEEEEEccc---------------cCCCCCCCCeEEEEeCCCCc----eEEcCCCCC
Q 014222 195 KWHRAPDMLR--RRHFFGSCVINNCLYVAGGE---------------NGGVHRSLRSAEVYDPNKNR----WSFISDMST 253 (428)
Q Consensus 195 ~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~---------------~~~~~~~~~~v~~yd~~t~~----W~~~~~~p~ 253 (428)
..+.+.+.|. ...+-++..+++.||+ ||. .-...+..+.|+.||.+.++ |..--.-+.
T Consensus 24 ~felvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~ 102 (339)
T PF09910_consen 24 RFELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKT 102 (339)
T ss_pred EeeeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCcc
Q ss_pred CccceEEEEE----CCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC----cEEEE
Q 014222 254 AMVPFIGVVY----EGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG----CKIRV 325 (428)
Q Consensus 254 ~~~~~~~~~~----~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~----~~i~~ 325 (428)
..++-..-.+ +++||+.-.+.....-++..|.+++.=+.+...|... .+.+.+...|-+ .+. +.|.+
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~ 177 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHC 177 (339)
T ss_pred ccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEE
Q ss_pred EeCCCCce----eeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecC
Q 014222 326 YDEVTDSW----SKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKS 378 (428)
Q Consensus 326 yd~~~~~W----~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~ 378 (428)
||+.+++| -.++......+..+...+..+..++--+-.++|. +.+.||
T Consensus 178 ~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG-----i~vgnP 229 (339)
T PF09910_consen 178 LDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG-----IFVGNP 229 (339)
T ss_pred EEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc-----EEEeCC
No 162
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.46 E-value=65 Score=30.92 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=83.5
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCc--eEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCC-
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQL--WQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTN- 194 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~- 194 (428)
++.+|+...++ .++.+|+.+.+ |......... ...-.....+| +||+- ..++ .+++||..+.
T Consensus 68 dg~v~~~~~~G----~i~A~d~~~g~~~W~~~~~~~~~---~~~~~~~~~~G-~i~~g-~~~g------~~y~ld~~~G~ 132 (370)
T COG1520 68 DGTVYVGTRDG----NIFALNPDTGLVKWSYPLLGAVA---QLSGPILGSDG-KIYVG-SWDG------KLYALDASTGT 132 (370)
T ss_pred CCeEEEecCCC----cEEEEeCCCCcEEecccCcCcce---eccCceEEeCC-eEEEe-cccc------eEEEEECCCCc
Confidence 67777763222 78999999987 8654332000 11122233356 77654 3222 7899999655
Q ss_pred -ceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--ceEEcCCC-CCCccceEEEEECCEEEEE
Q 014222 195 -KWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--RWSFISDM-STAMVPFIGVVYEGKWFLK 270 (428)
Q Consensus 195 -~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~-p~~~~~~~~~~~~g~lyv~ 270 (428)
.|..-.... .+..-..++.++.+|+.. . ...+.++|..+. .|+.-.+. ...+.....+..++.+|+-
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s--~------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGT--D------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG 203 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEec--C------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe
Confidence 487644332 333334555677777753 1 256788887754 68743332 1222222233678888886
Q ss_pred ecCCCCceeEEEEeCCCC--CeEe
Q 014222 271 GLGSHRQVLSEAYQPETD--SWFP 292 (428)
Q Consensus 271 Gg~~~~~~~i~~yd~~~~--~W~~ 292 (428)
... . ...++.+|++++ .|+.
T Consensus 204 ~~~-~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 204 SDG-Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCC-C-cceEEEEEccCCcEeeee
Confidence 432 1 224788998766 5774
No 163
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.71 E-value=1.2e+02 Score=32.91 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=83.8
Q ss_pred ceEEEEECCC-CceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC-ceEEcCCCCCCccceEEE
Q 014222 184 RRVIFYSART-NKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN-RWSFISDMSTAMVPFIGV 261 (428)
Q Consensus 184 ~~v~~yd~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~~~~~~~~ 261 (428)
..+.+|.... ++-+.++.+-..-.-.+.+.++|++.+.=| .++-.|+-.++ +-+.-.....+......-
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In---------~~vrLye~t~~~eLr~e~~~~~~~~aL~l~ 877 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN---------QSVRLYEWTTERELRIECNISNPIIALDLQ 877 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC---------cEEEEEEccccceehhhhcccCCeEEEEEE
Confidence 3455555544 777777777666666677788888776433 46778876665 221111211222222334
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCc-EEEEEe
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGC-KIRVYD 327 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~-~i~~yd 327 (428)
+.++.|+| |+--+..++..|+..++...+++....+.+..++..+++..|+.+-..++ -+..+|
T Consensus 878 v~gdeI~V--gDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 878 VKGDEIAV--GDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred ecCcEEEE--eeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 45788887 34444667889999999999998867777766666788888887755443 234454
No 164
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=75.67 E-value=1.1e+02 Score=32.04 Aligned_cols=140 Identities=10% Similarity=0.137 Sum_probs=72.4
Q ss_pred eeEEEC--CEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCC
Q 014222 210 GSCVIN--NCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 210 ~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
..+.++ |.-..+|+.. +..+.+|+-.+++.-....-...+....+-.-+|.+.+.|+++.. +-+||...
T Consensus 311 ~t~~~N~tGDWiA~g~~k------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK---VKvWn~~S 381 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSK------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK---VKVWNTQS 381 (893)
T ss_pred eEEEecccCCEEEEcCCc------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc---EEEEeccC
Confidence 344454 6677777643 467888887777665444333333333333348888887876543 34677655
Q ss_pred CC-eEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCc-eeeCcccccccCCcccccceEEEEeC--CeEEE
Q 014222 288 DS-WFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDS-WSKHIDSKMHLGNSRALEAAALVPLN--GKLCI 363 (428)
Q Consensus 288 ~~-W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~-W~~v~~~~~~~~~~~~~~~~~~~~~~--~~lyv 363 (428)
.. ...... .......-.....|+..+....+| .|..+|.+.-. ...... |.+ ..+++++.+ |.|++
T Consensus 382 gfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~-P~p-------~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 382 GFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTS-PEP-------IQFSCVAVDPSGELVC 451 (893)
T ss_pred ceEEEEecc-CCCceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecC-CCc-------eeeeEEEEcCCCCEEE
Confidence 42 111111 111111111234566655555554 78888876532 222221 211 135555555 88888
Q ss_pred EeCCC
Q 014222 364 IRNNM 368 (428)
Q Consensus 364 ~GG~~ 368 (428)
.|+.+
T Consensus 452 AG~~d 456 (893)
T KOG0291|consen 452 AGAQD 456 (893)
T ss_pred eeccc
Confidence 88753
No 165
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=75.66 E-value=86 Score=30.89 Aligned_cols=148 Identities=9% Similarity=-0.038 Sum_probs=78.0
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEE
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVY 263 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~ 263 (428)
..++++|..++.=..+.+.+..-..+...- +|+-+++-...+ ....++.+|..+++=..+.... +...+....-
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCC----CCccEEEEcCCCCcceecccCC-ccccCccCCC
Confidence 356666666665444444322222222222 333333333221 2468999999888733332221 1112333344
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCC--cEEEEEeCCCCc-eeeCcc
Q 014222 264 EGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG--CKIRVYDEVTDS-WSKHID 338 (428)
Q Consensus 264 ~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~--~~i~~yd~~~~~-W~~v~~ 338 (428)
+|+-+++..+......++.||++..+=+.+...... ...+...-+|+.+++-+..+ ..|..+|+.++. |..+..
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC-CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 666555544434444689999988876666542222 22444455666666654322 468999998877 888765
No 166
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.40 E-value=47 Score=35.40 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=22.1
Q ss_pred eEEEEECCEEEEEecCCCCceeEEEEeCCCC--CeEecC
Q 014222 258 FIGVVYEGKWFLKGLGSHRQVLSEAYQPETD--SWFPVY 294 (428)
Q Consensus 258 ~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~--~W~~~~ 294 (428)
.+-++++|+||+.... ..++++|.+++ .|+.-.
T Consensus 188 ~TPlvvgg~lYv~t~~----~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH----NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC----CeEEEEECCCCcEEEEEcC
Confidence 3456789999997542 24678887765 477543
No 167
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=75.17 E-value=96 Score=32.21 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=58.0
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCe
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSW 290 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W 290 (428)
+.++-|.-|+..|..+ ..|-.+|..+..=..+=.-........+..-+|+..+.|+.. ..|..||..+..=
T Consensus 541 v~FHPNs~Y~aTGSsD------~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSD------RTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---GLIKIWDLANGSL 611 (707)
T ss_pred EEECCcccccccCCCC------ceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC---CcEEEEEcCCCcc
Confidence 3445678899888542 578888888775433321111111112223366655555432 2356888877542
Q ss_pred E-ecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCC
Q 014222 291 F-PVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVT 330 (428)
Q Consensus 291 ~-~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~ 330 (428)
. ++... ......-....+|.+.++||.+ +.|..||...
T Consensus 612 v~~l~~H-t~ti~SlsFS~dg~vLasgg~D-nsV~lWD~~~ 650 (707)
T KOG0263|consen 612 VKQLKGH-TGTIYSLSFSRDGNVLASGGAD-NSVRLWDLTK 650 (707)
T ss_pred hhhhhcc-cCceeEEEEecCCCEEEecCCC-CeEEEEEchh
Confidence 1 11111 1111111234689999999876 4788877653
No 168
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=58 Score=28.47 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=38.6
Q ss_pred eeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCc--eEEcCCCCCCccceEEEEECCEEEEEec
Q 014222 210 GSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNR--WSFISDMSTAMVPFIGVVYEGKWFLKGL 272 (428)
Q Consensus 210 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~~~~~~~~~~~g~lyv~Gg 272 (428)
+....+|+||..-|... .+.+.++|..+.+ |+.--+ |....+-..+..++.+|...-
T Consensus 50 GL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw 108 (262)
T COG3823 50 GLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTW 108 (262)
T ss_pred ceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEe
Confidence 45667889998877652 3678899998654 443222 334555667888999998853
No 169
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.31 E-value=73 Score=30.13 Aligned_cols=195 Identities=16% Similarity=0.137 Sum_probs=88.2
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCC----CccccccEEEEEeCCEEEEEe-eeCCCCCCCceEEEEECC
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKE----YSEALGFGCAVLSGCHLYLFG-GKDPLKGSMRRVIFYSAR 192 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~----~~~r~~~~~~~~~~~~lyv~G-G~~~~~~~~~~v~~yd~~ 192 (428)
+.++||.-- ....++-+.|...++.-.--+.|.- +....+|.+..-+| .+..+. +.++.. ......+|++.
T Consensus 106 gk~~~V~N~--TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DG-sl~~v~Ld~~Gk~-~~~~t~~F~~~ 181 (342)
T PF06433_consen 106 GKFLYVQNF--TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDG-SLLTVTLDADGKE-AQKSTKVFDPD 181 (342)
T ss_dssp SSEEEEEEE--SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTS-CEEEEEETSTSSE-EEEEEEESSTT
T ss_pred CcEEEEEcc--CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCC-ceEEEEECCCCCE-eEeeccccCCC
Confidence 677888753 4556888999998876432222220 00112344333344 233322 222221 12233466665
Q ss_pred CCceeeCCCCCcCCcceeeEEECCEEEEE--ccccCCCCCCCCeEEEEeCCC-----CceEEcCCCCCCccceEEEE--E
Q 014222 193 TNKWHRAPDMLRRRHFFGSCVINNCLYVA--GGENGGVHRSLRSAEVYDPNK-----NRWSFISDMSTAMVPFIGVV--Y 263 (428)
Q Consensus 193 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~--GG~~~~~~~~~~~v~~yd~~t-----~~W~~~~~~p~~~~~~~~~~--~ 263 (428)
.+-.-.-+.........-...++|++|.+ +|.. ..-...+...+ ..|+.- +. ...+. -
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~------~~~~~~~~~~t~~e~~~~WrPG-----G~--Q~~A~~~~ 248 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS------AKFGKPWSLLTDAEKADGWRPG-----GW--QLIAYHAA 248 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS------EEEEEEEESS-HHHHHTTEEE------SS--S-EEEETT
T ss_pred CcccccccceECCCCeEEEEecCCEEEEEeccCCc------ccccCcccccCccccccCcCCc-----ce--eeeeeccc
Confidence 54322222221111223345678888885 3321 12223343333 345521 11 12333 3
Q ss_pred CCEEEEEe--cCC----CCceeEEEEeCCCCCeEecCCCCcCCCCCc-eEEECCe--EEEEEccCCcEEEEEeCCCCc
Q 014222 264 EGKWFLKG--LGS----HRQVLSEAYQPETDSWFPVYDGMVAGWRNP-SASLNRH--LYALDCKDGCKIRVYDEVTDS 332 (428)
Q Consensus 264 ~g~lyv~G--g~~----~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~--lyv~gG~~~~~i~~yd~~~~~ 332 (428)
.++|||+- |.. .....|+.||+++.+=..--+.. ....+ .+.-+++ ||.+.+.+ ..+.+||..+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~-~~l~v~D~~tGk 323 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGD-GTLDVYDAATGK 323 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTT-TEEEEEETTT--
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCC-CeEEEEeCcCCc
Confidence 68999972 211 12234999999998633221111 11112 2333444 55544422 489999999874
No 170
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.11 E-value=98 Score=30.80 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=93.4
Q ss_pred EEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCC-c-eeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEE
Q 014222 161 GCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTN-K-WHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVY 238 (428)
Q Consensus 161 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 238 (428)
.++...+++ |++.|.. -..+.++|...+ . -+.+..+...... ....-.+.+++.|+.+ ..+.++
T Consensus 208 ~~~fs~d~~-~l~s~s~-----D~tiriwd~~~~~~~~~~l~gH~~~v~~-~~f~p~g~~i~Sgs~D-------~tvriW 273 (456)
T KOG0266|consen 208 DVAFSPDGS-YLLSGSD-----DKTLRIWDLKDDGRNLKTLKGHSTYVTS-VAFSPDGNLLVSGSDD-------GTVRIW 273 (456)
T ss_pred eeEECCCCc-EEEEecC-----CceEEEeeccCCCeEEEEecCCCCceEE-EEecCCCCEEEEecCC-------CcEEEE
Confidence 334443434 5555443 236888888443 2 2333333333322 1222345788888875 588999
Q ss_pred eCCCCceEEcCCCCCCccceEE--EEECCEEEEEecCCCCceeEEEEeCCCCCeE---ecCCCCcCCCCCceE-EECCeE
Q 014222 239 DPNKNRWSFISDMSTAMVPFIG--VVYEGKWFLKGLGSHRQVLSEAYQPETDSWF---PVYDGMVAGWRNPSA-SLNRHL 312 (428)
Q Consensus 239 d~~t~~W~~~~~~p~~~~~~~~--~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~---~~~~~~~~~~~~~~~-~~~~~l 312 (428)
|..+.+=... +........+ ..-++.+++.+.. ...+..||..++.-. .+....... -...+ ...+..
T Consensus 274 d~~~~~~~~~--l~~hs~~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 274 DVRTGECVRK--LKGHSDGISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGK 347 (456)
T ss_pred eccCCeEEEe--eeccCCceEEEEECCCCCEEEEcCC---CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCc
Confidence 9988433221 1111112222 2336676666633 234678999887743 222211111 11222 224555
Q ss_pred EEEEccCCcEEEEEeCCCC----ceeeCcccccccCCcccccceEEE-EeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 313 YALDCKDGCKIRVYDEVTD----SWSKHIDSKMHLGNSRALEAAALV-PLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 313 yv~gG~~~~~i~~yd~~~~----~W~~v~~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
|++.+..+..+..||.... +|...... .+ .....+ ..+++..+.|+.+. .+.+||+.+
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~i~sg~~d~--~v~~~~~~s 410 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNL------VR--CIFSPTLSTGGKLIYSGSEDG--SVYVWDSSS 410 (456)
T ss_pred EEEEecCCCeEEEEEccCCcceeeecccCCc------ce--eEecccccCCCCeEEEEeCCc--eEEEEeCCc
Confidence 5555555557777777654 33333221 01 112222 34566666665443 467788775
No 171
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=73.94 E-value=70 Score=29.02 Aligned_cols=225 Identities=13% Similarity=0.056 Sum_probs=102.4
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCC-----CCCcCC
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAP-----DMLRRR 206 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-----~~~~~r 206 (428)
+++..+|..+++-...-..+.+. .+..| ..+| .++++-- +...+....+.+||.....-.... .++.+-
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~V-k~~~F---~~~g-n~~l~~t-D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPV-KRVDF---SFGG-NLILAST-DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCee-EEEee---ccCC-cEEEEEe-hhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 46677787777633222222220 01111 2234 4544432 222235567888888744322111 123333
Q ss_pred cceeeEEEC--CEEEEEccccCCCCCCCCeEEEEeCCCCceEEcC-CCCCCccceEEEEE-CCEEEEEecCCCCceeEEE
Q 014222 207 HFFGSCVIN--NCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFIS-DMSTAMVPFIGVVY-EGKWFLKGLGSHRQVLSEA 282 (428)
Q Consensus 207 ~~~~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~~~~~~~~~~-~g~lyv~Gg~~~~~~~i~~ 282 (428)
+....+..+ ++..+.|+.+ .++-.||..++.=..-. .... .....+... +...|+-|....... .
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~-------G~is~~da~~g~~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dttak---l 216 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHED-------GSISIYDARTGKELVDSDEEHS-SKINDLQFSRDRTYFITGSKDTTAK---L 216 (327)
T ss_pred cceeeeeecccCCEEEEecCC-------CcEEEEEcccCceeeechhhhc-cccccccccCCcceEEecccCccce---e
Confidence 444555544 4555555543 47788998886321111 1111 111111122 344455554332222 3
Q ss_pred EeCCCCCeEecCCCCcC-CCCCce-EEECCeEEEEEccCCcEEEEEeCCCCcee----------eCcccccccCCccccc
Q 014222 283 YQPETDSWFPVYDGMVA-GWRNPS-ASLNRHLYALDCKDGCKIRVYDEVTDSWS----------KHIDSKMHLGNSRALE 350 (428)
Q Consensus 283 yd~~~~~W~~~~~~~~~-~~~~~~-~~~~~~lyv~gG~~~~~i~~yd~~~~~W~----------~v~~~~~~~~~~~~~~ 350 (428)
+|..+-+=.+- .... +...++ .-+.+++.+.||.+..+|--=+......+ +++...-.++..
T Consensus 217 ~D~~tl~v~Kt--y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---- 290 (327)
T KOG0643|consen 217 VDVRTLEVLKT--YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---- 290 (327)
T ss_pred eeccceeeEEE--eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc----
Confidence 44433221111 0000 111112 23567777777765433322222222221 222222222222
Q ss_pred ceEEEEeCCeEEEEeCCCeEEEEEeecCC
Q 014222 351 AAALVPLNGKLCIIRNNMSISLVDVSKSN 379 (428)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~v~~yd~~ 379 (428)
+..++..+|+.|.-||.++.-.+..||.+
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 35677889999999999998888888754
No 172
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=73.65 E-value=21 Score=35.72 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=57.5
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEE--CCeEEEEEccCCcEEEEEeCCCCceeeCcccccc
Q 014222 265 GKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASL--NRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMH 342 (428)
Q Consensus 265 g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~ 342 (428)
--||+.|.. ..++.++++.+.|-.--. ......-++.+ -+.|+.+|+.++ .|+.||+.+++-...-.....
T Consensus 146 cDly~~gsg----~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~~hgLla~Gt~~g-~VEfwDpR~ksrv~~l~~~~~ 218 (703)
T KOG2321|consen 146 CDLYLVGSG----SEVYRLNLEQGRFLNPFE--TDSGELNVVSINEEHGLLACGTEDG-VVEFWDPRDKSRVGTLDAASS 218 (703)
T ss_pred ccEEEeecC----cceEEEEccccccccccc--cccccceeeeecCccceEEecccCc-eEEEecchhhhhheeeecccc
Confidence 357777632 247899999999853211 11111112322 356888888765 899999987754322111111
Q ss_pred ---cCCcccccceEEEEeCC-eEEEEeCCCeEEEEEeecCCCCCC
Q 014222 343 ---LGNSRALEAAALVPLNG-KLCIIRNNMSISLVDVSKSNGERG 383 (428)
Q Consensus 343 ---~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~~~~~ 383 (428)
.+-.-......+..+.+ -|-+--|. ....+.+||+.+++.
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIYDLRASKP 262 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeec-cCCcEEEEEcccCCc
Confidence 00000001233444444 44443333 344578888888433
No 173
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.10 E-value=94 Score=29.72 Aligned_cols=119 Identities=11% Similarity=-0.056 Sum_probs=67.1
Q ss_pred cceEEEEeeCC-CCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCC---CCCCCceEEEEECCC
Q 014222 118 EEWIYVIKRDR-EGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDP---LKGSMRRVIFYSART 193 (428)
Q Consensus 118 ~~~l~v~gg~~-~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~---~~~~~~~v~~yd~~t 193 (428)
..++||.-... ...+++.++|..+.+- +..++.. .+.+ .+.+-++..+|+.-.+.. .......+.+||+.|
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v--~g~i~~G--~~P~-~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRV--LGMTDGG--FLPN-PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEE--EEEEEcc--CCCc-eeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 45678875421 1226899999988653 3333332 1222 345556668999865211 111356899999999
Q ss_pred Cceee-CCCCCcCCcc-----ee-eEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEE
Q 014222 194 NKWHR-APDMLRRRHF-----FG-SCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSF 247 (428)
Q Consensus 194 ~~W~~-~~~~~~~r~~-----~~-~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~ 247 (428)
.+-.. ++.-+.||.. .. +..-+| .+||.- .....++-+.|..+++-..
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n------~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ------FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEECCCCCEEEEec------CCCCCEEEEEECCCCcEEE
Confidence 87543 3332333421 11 222244 577752 1224789999999987544
No 174
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=72.09 E-value=58 Score=31.39 Aligned_cols=191 Identities=17% Similarity=0.087 Sum_probs=90.3
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCce-EeCCCCCCCCccccccEEEE-EeCCEEEEEeeeCCCCCCCceEEEEECCCCc
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLW-QPLPPIPKEYSEALGFGCAV-LSGCHLYLFGGKDPLKGSMRRVIFYSARTNK 195 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W-~~l~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 195 (428)
.+.+||.-. +..++.+.|..+++- ..++... ..+...+. -++.++|+.+. + ..+.++|+.+++
T Consensus 5 ~~l~~V~~~---~~~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~ 69 (369)
T PF02239_consen 5 GNLFYVVER---GSGSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGK 69 (369)
T ss_dssp GGEEEEEEG---GGTEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSS
T ss_pred ccEEEEEec---CCCEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcC-C------CeEEEEECCccc
Confidence 345555542 234788899988763 2332211 11222332 34557999842 2 268999999887
Q ss_pred eeeCCCCCcCCcceeeEE-ECCEEEEEccccCCCCCCCCeEEEEeCCCCceE-EcC--CC----CCCccceEEEEECCEE
Q 014222 196 WHRAPDMLRRRHFFGSCV-INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWS-FIS--DM----STAMVPFIGVVYEGKW 267 (428)
Q Consensus 196 W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~-~~~--~~----p~~~~~~~~~~~~g~l 267 (428)
.+...+......++++ -+|+..+++.+. ...+.++|.+|.+=. .++ .+ +.+|.....+......
T Consensus 70 --~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 70 --VVATIKVGGNPRGIAVSPDGKYVYVANYE------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp --EEEEEE-SSEEEEEEE--TTTEEEEEEEE------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred --EEEEEecCCCcceEEEcCCCCEEEEEecC------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 3333344444444333 356544445443 268899998886432 222 11 2223322223335555
Q ss_pred EEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCC--CceEEECCeEEEEEccCCcEEEEEeCCCCcee
Q 014222 268 FLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWR--NPSASLNRHLYALDCKDGCKIRVYDEVTDSWS 334 (428)
Q Consensus 268 yv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~--~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~ 334 (428)
|++.-.... .++..|.....=..+.. ...... .....-+++.|+++-...+.+-+.|.+++.-.
T Consensus 142 fVv~lkd~~--~I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 142 FVVNLKDTG--EIWVVDYSDPKNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEETTTT--EEEEEETTTSSCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEccCC--eEEEEEeccccccceee-ecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 666533222 34566654432111111 111111 11223356666666555568999998887544
No 175
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=71.55 E-value=77 Score=28.47 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=72.1
Q ss_pred CeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeE
Q 014222 233 RSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHL 312 (428)
Q Consensus 233 ~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l 312 (428)
..|-.+|..|.+=..--.++.+... .-+..+|+|..+.... ++-.+|+.+-.--+--. ++.....+...-+..+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~gs----sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAYGS----SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEecCc----eeEEeccccccceeecc-CccccccccccCCCce
Confidence 5777888887753322122222211 2233577777664221 24455654432211111 2222222222335689
Q ss_pred EEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 313 YALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 313 yv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
||.||.+. .++.||-.++.=...-. ....+. ..+.-...+|.+|..|..+++-.+|.-.+..
T Consensus 239 fVaGged~-~~~kfDy~TgeEi~~~n-kgh~gp----VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 239 FVAGGEDF-KVYKFDYNTGEEIGSYN-KGHFGP----VHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEecCcce-EEEEEeccCCceeeecc-cCCCCc----eEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99998765 78888887764222210 011111 1233457789999999988888777777665
No 176
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=68.79 E-value=1.5e+02 Score=30.57 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=50.8
Q ss_pred ECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCCCCCCccc
Q 014222 308 LNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNGERGASAE 387 (428)
Q Consensus 308 ~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~~~~~~ 387 (428)
-+++++++. .+.-+++.++.++.+-+++....+. +....-........|+.|-++++. ..|++|+.++
T Consensus 439 d~~k~~~~s-~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~---g~I~v~nl~~------- 506 (691)
T KOG2048|consen 439 DKNKLFLVS-KNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTR---GQIFVYNLET------- 506 (691)
T ss_pred cCceEEEEe-cccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEecc---ceEEEEEccc-------
Confidence 356676665 3445788888888888777654333 111101113344567788888744 4588999999
Q ss_pred cccceeccCCccccchhhhhhh
Q 014222 388 HLWETISGKGQFKTLVTNLWSS 409 (428)
Q Consensus 388 ~~W~~~~~~~~~~~f~~~~~~~ 409 (428)
..-..+.. +.+.++++...+
T Consensus 507 ~~~~~l~~--rln~~vTa~~~~ 526 (691)
T KOG2048|consen 507 LESHLLKV--RLNIDVTAAAFS 526 (691)
T ss_pred ceeecchh--ccCcceeeeecc
Confidence 55555441 222455554444
No 177
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=68.33 E-value=1.2e+02 Score=29.47 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=64.2
Q ss_pred cEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEE-CCEEEEEccccCCCCCCCCeEEEE
Q 014222 160 FGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVI-NNCLYVAGGENGGVHRSLRSAEVY 238 (428)
Q Consensus 160 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~y 238 (428)
.+.+...++.||..|-.+ ..+-+||..... .++.+|..-.......+ .|--|+.-+.++ .+|.+|
T Consensus 351 ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~lw 416 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD------GSVKLW 416 (506)
T ss_pred EEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC------CeEEEE
Confidence 344444454666665433 357788887765 55555542222222222 344444444432 359999
Q ss_pred eCCCCceEEcCCCCCCc-cceEEEEE--CCEEEEEecCCCCceeEEEEeCCCCCeEecCC
Q 014222 239 DPNKNRWSFISDMSTAM-VPFIGVVY--EGKWFLKGLGSHRQVLSEAYQPETDSWFPVYD 295 (428)
Q Consensus 239 d~~t~~W~~~~~~p~~~-~~~~~~~~--~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~ 295 (428)
|+...+ .++..+..- .......+ -|+..+++|. ...++.|+-.+..|+++..
T Consensus 417 DLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 417 DLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred Eehhhc--ccceeeccccccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeeh
Confidence 998765 333222211 12233333 3555555643 4458899999999999875
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=67.89 E-value=91 Score=27.90 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCceEEcCCCCC-----Cccce-EEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEE---CCeE
Q 014222 242 KNRWSFISDMST-----AMVPF-IGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASL---NRHL 312 (428)
Q Consensus 242 t~~W~~~~~~p~-----~~~~~-~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~l 312 (428)
...|+..+|+.. +-.+. ...--.|.|+..||+. .+++.|.++++.+..-..- .-+..+++. ++.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~----~~y~~dlE~G~i~r~~rGH--tDYvH~vv~R~~~~q- 170 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG----VIYQVDLEDGRIQREYRGH--TDYVHSVVGRNANGQ- 170 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe----EEEEEEecCCEEEEEEcCC--cceeeeeeecccCcc-
Confidence 346777766644 21121 1222467888888742 4789999999987653211 111223332 233
Q ss_pred EEEEccCCcEEEEEeCCCCceeeC
Q 014222 313 YALDCKDGCKIRVYDEVTDSWSKH 336 (428)
Q Consensus 313 yv~gG~~~~~i~~yd~~~~~W~~v 336 (428)
.+.|+.++ .+.++|.++.+=.++
T Consensus 171 ilsG~EDG-tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 171 ILSGAEDG-TVRVWDTKTQKHVSM 193 (325)
T ss_pred eeecCCCc-cEEEEeccccceeEE
Confidence 34455554 788999988765544
No 179
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=67.83 E-value=1.1e+02 Score=28.93 Aligned_cols=176 Identities=10% Similarity=0.094 Sum_probs=78.9
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeE
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSC 212 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 212 (428)
.+-|||...++..+- -... ....+++....--.+++.||.+. .+-++|..|+.=- ..|...+...+.+
T Consensus 216 ~VKCwDLe~nkvIR~--YhGH--lS~V~~L~lhPTldvl~t~grDs------t~RvWDiRtr~~V--~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRH--YHGH--LSGVYCLDLHPTLDVLVTGGRDS------TIRVWDIRTRASV--HVLSGHTNPVASV 283 (460)
T ss_pred eeEEEechhhhhHHH--hccc--cceeEEEeccccceeEEecCCcc------eEEEeeecccceE--EEecCCCCcceeE
Confidence 677888887763211 0000 00111222221124777777652 4556777665321 1122122222222
Q ss_pred EE---CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC
Q 014222 213 VI---NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS 289 (428)
Q Consensus 213 ~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~ 289 (428)
.+ +..||- |..+ .++-.+|...++= +..+........+.+++-+.|.|.... ...+.+++.-.+.
T Consensus 284 ~~~~~dpqvit-~S~D-------~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas--~dnik~w~~p~g~ 351 (460)
T KOG0285|consen 284 MCQPTDPQVIT-GSHD-------STVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASAS--PDNIKQWKLPEGE 351 (460)
T ss_pred EeecCCCceEE-ecCC-------ceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccC--CccceeccCCccc
Confidence 22 445443 3322 4566677665531 111111111223444565666553221 2224455544433
Q ss_pred eEecCCCCcCC--CCCceEEECCeEEEEEccCCcEEEEEeCCCC-ceeeC
Q 014222 290 WFPVYDGMVAG--WRNPSASLNRHLYALDCKDGCKIRVYDEVTD-SWSKH 336 (428)
Q Consensus 290 W~~~~~~~~~~--~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~-~W~~v 336 (428)
.- .+ .... ......+..+.+|+.||.++ .++.||.++. ..+..
T Consensus 352 f~--~n-lsgh~~iintl~~nsD~v~~~G~dng-~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 352 FL--QN-LSGHNAIINTLSVNSDGVLVSGGDNG-SIMFWDWKSGHNYQRG 397 (460)
T ss_pred hh--hc-cccccceeeeeeeccCceEEEcCCce-EEEEEecCcCcccccc
Confidence 21 11 1111 11223456778888888665 7888997765 34444
No 180
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=67.00 E-value=1.2e+02 Score=28.82 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=70.8
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcc--eeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC--c
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHF--FGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN--R 244 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~--~ 244 (428)
.+.+.||.+ +..++++..+..|--. ++...-. .....+++.+.+.|+.+ ..+.+|+..++ +
T Consensus 77 ~l~aTGGgD------D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms-------G~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 77 NLVATGGGD------DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS-------GKVLVFKVSTGGEQ 141 (399)
T ss_pred ceEEecCCC------ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC-------ccEEEEEcccCceE
Confidence 688888865 2567888888875322 2211111 22334577888888765 35666655544 6
Q ss_pred eEEcCCCCCC--ccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcE
Q 014222 245 WSFISDMSTA--MVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCK 322 (428)
Q Consensus 245 W~~~~~~p~~--~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~ 322 (428)
|....++..- ...|. .+.|.++|... -+++.|..-+..-.++-+........+-..-+|+..+.|- +...
T Consensus 142 ~~~~~e~~dieWl~WHp----~a~illAG~~D---GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~dgt 213 (399)
T KOG0296|consen 142 WKLDQEVEDIEWLKWHP----RAHILLAGSTD---GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-DDGT 213 (399)
T ss_pred EEeecccCceEEEEecc----cccEEEeecCC---CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-cCce
Confidence 6654222110 00111 23344444321 1356776655433332111111222222234566666654 3458
Q ss_pred EEEEeCCCCc
Q 014222 323 IRVYDEVTDS 332 (428)
Q Consensus 323 i~~yd~~~~~ 332 (428)
|.+||+++.+
T Consensus 214 i~~Wn~ktg~ 223 (399)
T KOG0296|consen 214 IIVWNPKTGQ 223 (399)
T ss_pred EEEEecCCCc
Confidence 8999998874
No 181
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.60 E-value=1.3e+02 Score=29.30 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=93.9
Q ss_pred EEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCc-CCcceeeEEE-CCEEEEEccccCCCCCCCCeEEEE
Q 014222 161 GCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLR-RRHFFGSCVI-NNCLYVAGGENGGVHRSLRSAEVY 238 (428)
Q Consensus 161 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~y 238 (428)
++...++ +.|++|-. ..++.=.-.-.+|+.++..+. +-.......+ ++.++++|.. ..+++=
T Consensus 141 ~v~f~~~-~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~--------G~v~~S 204 (398)
T PLN00033 141 SISFKGK-EGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE--------GAIYVT 204 (398)
T ss_pred eeEEECC-EEEEEcCc-------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc--------ceEEEE
Confidence 3334444 78887532 123333333468998754221 1112223334 3557777643 234444
Q ss_pred eCCCCceEEcCCCC----CCc--------------cceEEE-EECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcC
Q 014222 239 DPNKNRWSFISDMS----TAM--------------VPFIGV-VYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVA 299 (428)
Q Consensus 239 d~~t~~W~~~~~~p----~~~--------------~~~~~~-~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~ 299 (428)
+-.-.+|+.+...+ ..+ ....+. .-++.++++|-.. ......|.-...|+.+......
T Consensus 205 ~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G---~~~~s~d~G~~~W~~~~~~~~~ 281 (398)
T PLN00033 205 SNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG---NFYLTWEPGQPYWQPHNRASAR 281 (398)
T ss_pred CCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc---cEEEecCCCCcceEEecCCCcc
Confidence 44556898762111 000 001111 2245555554211 1122344444559988764433
Q ss_pred CCCCceEEECCeEEEEEccCCcEEEEEeCCCCce-----eeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEE
Q 014222 300 GWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSW-----SKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVD 374 (428)
Q Consensus 300 ~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W-----~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~ 374 (428)
........-++.+++++... .+..-+-....| .++.. ..... .........++.+++.|.... +.
T Consensus 282 ~l~~v~~~~dg~l~l~g~~G--~l~~S~d~G~~~~~~~f~~~~~---~~~~~--~l~~v~~~~d~~~~a~G~~G~---v~ 351 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRGG--GLYVSKGTGLTEEDFDFEEADI---KSRGF--GILDVGYRSKKEAWAAGGSGI---LL 351 (398)
T ss_pred ceeeeeEcCCCCEEEEeCCc--eEEEecCCCCcccccceeeccc---CCCCc--ceEEEEEcCCCcEEEEECCCc---EE
Confidence 33222334678899887432 455545454544 44332 10000 011233445678888887643 22
Q ss_pred eecCCCCCCCccccccceecc
Q 014222 375 VSKSNGERGASAEHLWETISG 395 (428)
Q Consensus 375 ~yd~~~~~~~~~~~~W~~~~~ 395 (428)
.-.... ++|+....
T Consensus 352 ~s~D~G-------~tW~~~~~ 365 (398)
T PLN00033 352 RSTDGG-------KSWKRDKG 365 (398)
T ss_pred EeCCCC-------cceeEccc
Confidence 333344 88988763
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=65.73 E-value=1.4e+02 Score=29.32 Aligned_cols=176 Identities=11% Similarity=0.028 Sum_probs=85.4
Q ss_pred CceEEEEECCCCceeeCCCCCcCCcceeeEEECCE-EEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEE
Q 014222 183 MRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNC-LYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGV 261 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~ 261 (428)
...++++|..+++-+.+...+.... .....-+++ |++....+ + ...++.+|..+...+.+..-... ......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~-g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~w 299 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKD-G----VLNIYVMGANGGTPSQLTSGAGN-NTEPSW 299 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecC-C----cEEEEEEECCCCCeEeeccCCCC-cCCEEE
Confidence 3478999998877665554432111 111222454 44433222 1 23588889888876666432211 112233
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCe-EEEEEccCCcEEEEEeCCCCceeeCcccc
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRH-LYALDCKDGCKIRVYDEVTDSWSKHIDSK 340 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~~~i~~yd~~~~~W~~v~~~~ 340 (428)
.-+|+..++.........++.+|.....-+.+.. . . ......-+|+ |++.++ ..++.+|..+..+..+....
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~--~-~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt~~~ 372 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-R--G-YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLSSTF 372 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-C--C-CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEecCCC
Confidence 3466543433322233456677765554333321 1 1 1222222444 444443 35788999998887654211
Q ss_pred cccCCcccccceEEEEeCCeEEEEeCCCe-EEEEEeecCCC
Q 014222 341 MHLGNSRALEAAALVPLNGKLCIIRNNMS-ISLVDVSKSNG 380 (428)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~v~~yd~~~ 380 (428)
. . .......++++++++...+ ...+++.+.+.
T Consensus 373 -~---~----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 373 -L---D----ESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred -C---C----CCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 1 0 1223455666666654332 33344455433
No 183
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=65.61 E-value=1.2e+02 Score=28.55 Aligned_cols=244 Identities=15% Similarity=0.086 Sum_probs=121.2
Q ss_pred cceEEEEeeC-CCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCC-c
Q 014222 118 EEWIYVIKRD-REGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTN-K 195 (428)
Q Consensus 118 ~~~l~v~gg~-~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~ 195 (428)
...||++... ..+....+.+|+..++-+.+.....+-.+. .|-.+.-.|..||+. -+. ...+-+|-..++ .
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~yvsvd~~g~~vf~A-nY~-----~g~v~v~p~~~dG~ 123 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-CYVSVDEDGRFVFVA-NYH-----SGSVSVYPLQADGS 123 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-eEEEECCCCCEEEEE-Ecc-----CceEEEEEcccCCc
Confidence 4578998864 345567788899888888876544331111 222222233234433 221 235556655442 1
Q ss_pred -eee------CCCCCcCC-----cceeeEEECC-EEEEEccccCCCCCCCCeEEEEeCCCCceEEcCC--CCC-CccceE
Q 014222 196 -WHR------APDMLRRR-----HFFGSCVINN-CLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISD--MST-AMVPFI 259 (428)
Q Consensus 196 -W~~------~~~~~~~r-----~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~-~~~~~~ 259 (428)
|.. ..+-|.+| ..++...-++ .|++. +-..+.+..|+.....-+...+ .+. .-..|.
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-------DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-------DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-------ecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 221 12223334 2222222344 34433 1224678889888665544332 111 122344
Q ss_pred EEEECCEE-EEEecCCCCceeEEEEeCCCCCeEecCCC--CcCCC---CCceE---EECC-eEEEEEccCCcEEEEE--e
Q 014222 260 GVVYEGKW-FLKGLGSHRQVLSEAYQPETDSWFPVYDG--MVAGW---RNPSA---SLNR-HLYALDCKDGCKIRVY--D 327 (428)
Q Consensus 260 ~~~~~g~l-yv~Gg~~~~~~~i~~yd~~~~~W~~~~~~--~~~~~---~~~~~---~~~~-~lyv~gG~~~~~i~~y--d 327 (428)
+.--++++ |++. +-.....++.||+...+.+++... ++... ..+++ .-+| .||+.-- ..+.|.+| |
T Consensus 197 ~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~ 274 (346)
T COG2706 197 VFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVD 274 (346)
T ss_pred EEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEc
Confidence 44446765 6664 334455678899888888776542 22221 11222 2244 4666642 22366666 6
Q ss_pred CCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 328 EVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 328 ~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+.++.-..+...+...-.+| .+.+..-++.|++.+-....-.++.-|+++
T Consensus 275 ~~~g~L~~~~~~~teg~~PR---~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPR---DFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCEEEEEEEeccCCcCCc---cceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 66665554443322211122 255555566666665444444555556666
No 184
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=65.59 E-value=1.4e+02 Score=29.14 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=37.5
Q ss_pred CCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCC
Q 014222 180 KGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNK 242 (428)
Q Consensus 180 ~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t 242 (428)
....+.++++|..-+.--++.-+-..-.-+++-.+++.+|++-=.. .+-+.+.|...
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrq------tDPlfviDlsN 458 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQ------TDPLFVIDLSN 458 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEec------cCceEEEEcCC
Confidence 3467899999998887777766543333345667788888875432 24456666644
No 185
>PRK01029 tolB translocation protein TolB; Provisional
Probab=62.96 E-value=1.6e+02 Score=29.00 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=42.3
Q ss_pred ECCE-EEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCe-EEEEEccC-CcEEEEEeCCCCceeeCcc
Q 014222 263 YEGK-WFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRH-LYALDCKD-GCKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 263 ~~g~-lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~-~~~i~~yd~~~~~W~~v~~ 338 (428)
-+|+ |++... ......++.||+.+++.+.+.... .....+...-+++ |++..... ...++.+|..++..+.+..
T Consensus 336 PDG~~Laf~~~-~~g~~~I~v~dl~~g~~~~Lt~~~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 336 PDGKKIAFCSV-IKGVRQICVYDLATGRDYQLTTSP-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCEEEEEEc-CCCCcEEEEEECCCCCeEEccCCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 3555 444332 223345889999999988876432 1111222233554 55444322 2579999999888777653
No 186
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=62.36 E-value=1e+02 Score=26.42 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=46.2
Q ss_pred eeEEEEeCCCCceEeCC--CCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcce
Q 014222 132 ISWHAFDPIYQLWQPLP--PIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFF 209 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~--~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 209 (428)
..++++|..++.|..|. +.+....+ .+..-.-+...++++|...+.-..-..+++|+..|+.-..+-+........
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sP--K~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQV 165 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSP--KYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQV 165 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCC--ceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccceeE
Confidence 57999999999987663 22212111 222223333245555543332223458999999999988887664433333
Q ss_pred eeEE
Q 014222 210 GSCV 213 (428)
Q Consensus 210 ~~~~ 213 (428)
..+.
T Consensus 166 is~e 169 (200)
T PF15525_consen 166 ISAE 169 (200)
T ss_pred EEEE
Confidence 3333
No 187
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=61.92 E-value=39 Score=27.18 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=35.9
Q ss_pred EEEEecCCCCceeEEEEeCCCCC---eEecCCCCcCCCCCceE-E---ECCeEEEEEccCCcEEEEEeCCCCc--eeeC
Q 014222 267 WFLKGLGSHRQVLSEAYQPETDS---WFPVYDGMVAGWRNPSA-S---LNRHLYALDCKDGCKIRVYDEVTDS--WSKH 336 (428)
Q Consensus 267 lyv~Gg~~~~~~~i~~yd~~~~~---W~~~~~~~~~~~~~~~~-~---~~~~lyv~gG~~~~~i~~yd~~~~~--W~~v 336 (428)
+.++|- ...+.+||.+.|. ++++++ +.....+ . ....|.++||. ..|+-||.+.++ |+..
T Consensus 66 ~LliGt----~t~llaYDV~~N~d~Fyke~~D----Gvn~i~~g~~~~~~~~l~ivGGn--csi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 66 CLLIGT----QTSLLAYDVENNSDLFYKEVPD----GVNAIVIGKLGDIPSPLVIVGGN--CSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred EEEEec----cceEEEEEcccCchhhhhhCcc----ceeEEEEEecCCCCCcEEEECce--EEEEEeCCCCcEEEEEec
Confidence 455553 3357899998886 334332 2211111 1 25678889984 478888887664 7654
No 188
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.35 E-value=1.8e+02 Score=28.96 Aligned_cols=174 Identities=15% Similarity=0.115 Sum_probs=85.9
Q ss_pred eEEEEeCCCC-c-eEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 133 SWHAFDPIYQ-L-WQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 133 ~~~~yd~~~~-~-W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
.+.++|...+ . -+.+..... ..++++....+++++.|+.++ .+.++|..+.+-.+.-..........
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEeeeccCCceEEE
Confidence 5667777333 2 223332222 234555544336888887653 68889988855433322222222222
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceE---EcCCCCCCccceEEEE--ECCEEEEEecCCCCceeEEEEeC
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWS---FISDMSTAMVPFIGVV--YEGKWFLKGLGSHRQVLSEAYQP 285 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~~~~~~~~~--~~g~lyv~Gg~~~~~~~i~~yd~ 285 (428)
...-++.+++.+.++ ..+.+||..+..-. .+.....+. ....+. -+++ |++.+.... .+-.||.
T Consensus 295 ~f~~d~~~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~-~ll~~~~d~--~~~~w~l 363 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYD-------GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGK-YLLSASLDR--TLKLWDL 363 (456)
T ss_pred EECCCCCEEEEcCCC-------ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCc-EEEEecCCC--eEEEEEc
Confidence 233366777777653 57899999988733 233222222 222222 2444 444332222 2345555
Q ss_pred CCC----CeEecCCCCcCCCCCceE-EECCeEEEEEccCCcEEEEEeCCCC
Q 014222 286 ETD----SWFPVYDGMVAGWRNPSA-SLNRHLYALDCKDGCKIRVYDEVTD 331 (428)
Q Consensus 286 ~~~----~W~~~~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~i~~yd~~~~ 331 (428)
... +|...... .......+ ..+++..+.|..+ ..|+.||+.+.
T Consensus 364 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d-~~v~~~~~~s~ 411 (456)
T KOG0266|consen 364 RSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSED-GSVYVWDSSSG 411 (456)
T ss_pred cCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCC-ceEEEEeCCcc
Confidence 543 23322221 01111112 3456666666555 48999999873
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.01 E-value=2.6e+02 Score=30.81 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=81.6
Q ss_pred eeeCCCC-CcCCcceeeEE---ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccc----eEEEEECCEE
Q 014222 196 WHRAPDM-LRRRHFFGSCV---INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVP----FIGVVYEGKW 267 (428)
Q Consensus 196 W~~~~~~-~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~----~~~~~~~g~l 267 (428)
|..+..| +.+|..-.++- ..|++|+.|+. ..+-++|..+.+ .+.++|..-.. .++-..+|.+
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~--------r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV--------RSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCe--------eEEEEEecccce--eEeecccCCCccceeecccccCCce
Confidence 5556555 44554432222 26889987764 588889988764 44555544222 1222346788
Q ss_pred EEEecCCCCceeEEEEeCCC-------CCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccc
Q 014222 268 FLKGLGSHRQVLSEAYQPET-------DSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSK 340 (428)
Q Consensus 268 yv~Gg~~~~~~~i~~yd~~~-------~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~ 340 (428)
.+.|-.++ ++-.||... +.|.+-...++ ..+....-+|.--++.|....+|+.+|+... .....+.
T Consensus 1224 i~AGfaDG---svRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~~e~~~~ 1296 (1387)
T KOG1517|consen 1224 IAAGFADG---SVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--SKETFLT 1296 (1387)
T ss_pred EEEeecCC---ceEEeecccCCccccceeecccCCccc--ceeEEeecCCCcceeeeccCCeEEEEecccC--cccccce
Confidence 88875433 345777543 23444332111 1111111123333455555558999998875 2222211
Q ss_pred cccCCccccc-ceEEEEeC-CeEEEEeCCCeEEEEEeecCCC
Q 014222 341 MHLGNSRALE-AAALVPLN-GKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
....+. .+. -.++.++. -.|+..|+. ..+.+|+...
T Consensus 1297 iv~~~~-yGs~lTal~VH~hapiiAsGs~---q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1297 IVAHWE-YGSALTALTVHEHAPIIASGSA---QLIKIYSLSG 1334 (1387)
T ss_pred eeeccc-cCccceeeeeccCCCeeeecCc---ceEEEEecCh
Confidence 111110 000 12333443 346666654 4567888777
No 190
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=59.33 E-value=1.6e+02 Score=27.67 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=79.5
Q ss_pred eeeEEECCEEEEEcccc-CCC--CCCCCeEEEE-eCCCCceEEcCCC---C--C---CccceEEEEECCEEEEEec-CCC
Q 014222 209 FGSCVINNCLYVAGGEN-GGV--HRSLRSAEVY-DPNKNRWSFISDM---S--T---AMVPFIGVVYEGKWFLKGL-GSH 275 (428)
Q Consensus 209 ~~~~~~~~~iyv~GG~~-~~~--~~~~~~v~~y-d~~t~~W~~~~~~---p--~---~~~~~~~~~~~g~lyv~Gg-~~~ 275 (428)
++.+.++|.|+++.... ... ......+..| .....+|...... . . .....+.++-+++||++-| .+.
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 35777899999887542 111 1111222333 3445578764311 1 1 1234567778999999854 221
Q ss_pred ----CceeEEEE--eCCCCCeEecCCCCcCCC---------CCceEEE-CCeEEEE-Ec-cC-C---cEEEEEeCC-CCc
Q 014222 276 ----RQVLSEAY--QPETDSWFPVYDGMVAGW---------RNPSASL-NRHLYAL-DC-KD-G---CKIRVYDEV-TDS 332 (428)
Q Consensus 276 ----~~~~i~~y--d~~~~~W~~~~~~~~~~~---------~~~~~~~-~~~lyv~-gG-~~-~---~~i~~yd~~-~~~ 332 (428)
....+..+ +....+|......+.... ..+.++. +|.|.+- -+ .. + -.+.+|..+ ..+
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~ 161 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKT 161 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccc
Confidence 11112222 223336987655332211 0112333 3333221 11 11 1 246778776 778
Q ss_pred eeeCcccccccCCcccccceEEEEe-CCeEEEEeCCC-eEEEEEeecCCCCCCCccccccce-eccCCc
Q 014222 333 WSKHIDSKMHLGNSRALEAAALVPL-NGKLCIIRNNM-SISLVDVSKSNGERGASAEHLWET-ISGKGQ 398 (428)
Q Consensus 333 W~~v~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~-~~~~v~~yd~~~~~~~~~~~~W~~-~~~~~~ 398 (428)
|+.-..+++.-. ..+.++.. +++|+++.-.. ....|+.-.-.. .+|++ +..+++
T Consensus 162 W~lskg~s~~gC-----~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG-------~tWtea~gtlsr 218 (310)
T PF13859_consen 162 WKLSKGMSPAGC-----SDPSVVEWEDGKLLMMTACDDGRRRVYESGDMG-------TTWTEALGTLSR 218 (310)
T ss_dssp -EE-S----TT------EEEEEEEE-TTEEEEEEE-TTS---EEEESSTT-------SS-EE-TTTTTT
T ss_pred eEeccccCCCCc-----ceEEEEeccCCeeEEEEecccceEEEEEEcccc-------eehhhccCccce
Confidence 998776654322 24778888 78999886532 333444433334 78988 555554
No 191
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=58.27 E-value=1.4e+02 Score=26.79 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=108.7
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECC----CCceeeCCCCCcCCcc
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSAR----TNKWHRAPDMLRRRHF 208 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~----t~~W~~~~~~~~~r~~ 208 (428)
......+..+.|.+=|. + + .+ ++|++.+.. ...+.-|... ...|...-.+|.+-.+
T Consensus 11 ~~~~~~~~~GsWmrDpl-~-----~--------~~-r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~lp~~~~g 70 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPL-P-----A--------DD-RIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYRLPYSWDG 70 (249)
T ss_pred EEEeeccccceeecCCC-c-----c--------cC-ceEEecccc-----CceEEEeccHHHhhccCcceEEeCCCCccc
Confidence 45556666778865321 1 1 24 688873332 2345555543 3345555567777778
Q ss_pred eeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCC---ceEEcCCCCC---------CccceEEEEECCEEEEE-ecCC-
Q 014222 209 FGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKN---RWSFISDMST---------AMVPFIGVVYEGKWFLK-GLGS- 274 (428)
Q Consensus 209 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~---~W~~~~~~p~---------~~~~~~~~~~~g~lyv~-Gg~~- 274 (428)
.+-++++|.+|.-.+. ...+..||..+. .|..++.+-. +....-.++-..-|+++ ....
T Consensus 71 Tg~VVynGs~yynk~~-------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~ 143 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAG-------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPEN 143 (249)
T ss_pred cceEEEcceEEeeccC-------CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccccc
Confidence 8889999999986543 367889999884 4555553211 11112233334445655 3322
Q ss_pred CCceeEEEEeCC----CCCeEecCCCCcCCCCCceEEECCeEEEEEccCC--cEE-EEEeCCCCceeeCcccccccCCcc
Q 014222 275 HRQVLSEAYQPE----TDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDG--CKI-RVYDEVTDSWSKHIDSKMHLGNSR 347 (428)
Q Consensus 275 ~~~~~i~~yd~~----~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~--~~i-~~yd~~~~~W~~v~~~~~~~~~~~ 347 (428)
.....+...|+. +.+|..-- +......+.++=|.||++..... ..| +.||..+++=+.+. +|... .
T Consensus 144 ~g~iv~skLdp~tl~~e~tW~T~~---~k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~-ipf~N--~- 216 (249)
T KOG3545|consen 144 AGTIVLSKLDPETLEVERTWNTTL---PKRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERID-LPFPN--P- 216 (249)
T ss_pred CCcEEeeccCHHHhheeeeecccc---CCCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccc-ccccc--h-
Confidence 222234678874 34674321 11222335566788999975433 234 79999988775443 22111 1
Q ss_pred cccceEEE---EeCCeEEEEeC
Q 014222 348 ALEAAALV---PLNGKLCIIRN 366 (428)
Q Consensus 348 ~~~~~~~~---~~~~~lyv~GG 366 (428)
....+++ ..+.+||+.-.
T Consensus 217 -y~~~~~idYNP~D~~LY~wdn 237 (249)
T KOG3545|consen 217 -YSYATMIDYNPRDRRLYAWDN 237 (249)
T ss_pred -hhhhhccCCCcccceeeEecC
Confidence 1223333 23568888743
No 192
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=58.04 E-value=1.1e+02 Score=25.42 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=47.7
Q ss_pred EEECCEEEEEccccCCCCCCCCeEEEEeCCCCce-EEcCCCCCCc---cceEE-EEECCEEEEEec-CCCCceeEEEEe-
Q 014222 212 CVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRW-SFISDMSTAM---VPFIG-VVYEGKWFLKGL-GSHRQVLSEAYQ- 284 (428)
Q Consensus 212 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~~---~~~~~-~~~~g~lyv~Gg-~~~~~~~i~~yd- 284 (428)
+.++|.+|-++..... .....+..||..+.+. +.++.++... ..... ++.+++|-++-. .......|++.+
T Consensus 2 V~vnG~~hW~~~~~~~--~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENN--DEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCC--CCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence 5689999999876432 1112799999999999 5554333222 12333 233778877742 222223455443
Q ss_pred --CCCCCeEecC
Q 014222 285 --PETDSWFPVY 294 (428)
Q Consensus 285 --~~~~~W~~~~ 294 (428)
.....|+++-
T Consensus 80 ~~~~~~SWtK~~ 91 (164)
T PF07734_consen 80 YGYGKESWTKLF 91 (164)
T ss_pred eccCcceEEEEE
Confidence 3477899873
No 193
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.40 E-value=1.5e+02 Score=26.91 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=52.6
Q ss_pred CeEEEEeCCCC--ceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCC--CeEecCCCCcCCCCCceEEE
Q 014222 233 RSAEVYDPNKN--RWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETD--SWFPVYDGMVAGWRNPSASL 308 (428)
Q Consensus 233 ~~v~~yd~~t~--~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~~ 308 (428)
..+.+-|+.+. .|+.+- ..|...++.++++. .|+|-.+.. +|..+.+++ -|..+.- ......+.+..
T Consensus 33 ~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~g~---lYfl~~~tGs~~w~f~~~--~~vk~~a~~d~ 103 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYSGG---LYFLCVKTGSQIWNFVIL--ETVKVRAQCDF 103 (354)
T ss_pred ceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEccCc---EEEEEecchhheeeeeeh--hhhccceEEcC
Confidence 57788888876 587653 24666677778877 445543322 445555554 5776542 11111223344
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCc--ee
Q 014222 309 NRHLYALDCKDGCKIRVYDEVTDS--WS 334 (428)
Q Consensus 309 ~~~lyv~gG~~~~~i~~yd~~~~~--W~ 334 (428)
++.+..+|-.++ ..++.|+.+.. |+
T Consensus 104 ~~glIycgshd~-~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 104 DGGLIYCGSHDG-NFYALDPKTYGCVYK 130 (354)
T ss_pred CCceEEEecCCC-cEEEecccccceEEe
Confidence 555555555554 67888887763 55
No 194
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=55.68 E-value=2.4e+02 Score=28.67 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=58.8
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEEC--CEEEEEccccCCCCCCCCeEEEEeCCCCceE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVIN--NCLYVAGGENGGVHRSLRSAEVYDPNKNRWS 246 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~ 246 (428)
.||+.| ...+++++|...++|..--.... ...-++.++ +.|+++||.+ ..|+.+|+.+.+--
T Consensus 147 Dly~~g-------sg~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~-------g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 147 DLYLVG-------SGSEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTED-------GVVEFWDPRDKSRV 210 (703)
T ss_pred cEEEee-------cCcceEEEEcccccccccccccc--ccceeeeecCccceEEecccC-------ceEEEecchhhhhh
Confidence 566664 34589999999999864211111 112233333 4688888864 58999999887431
Q ss_pred E-------cCCCCCCcc--ceEEEEECC-EEEEEecCCCCceeEEEEeCCCCCeEecC
Q 014222 247 F-------ISDMSTAMV--PFIGVVYEG-KWFLKGLGSHRQVLSEAYQPETDSWFPVY 294 (428)
Q Consensus 247 ~-------~~~~p~~~~--~~~~~~~~g-~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~ 294 (428)
. +...|..-. ..++..+.+ -|-+.-|.. .-.++.||+.+.+=..+.
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--TGSVLIYDLRASKPLLVK 266 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeecc--CCcEEEEEcccCCceeec
Confidence 1 122222211 233344433 454432322 224789999877644443
No 195
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=53.48 E-value=1.7e+02 Score=26.35 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=63.7
Q ss_pred CceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE
Q 014222 183 MRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~ 262 (428)
...|-.+|..|.+=.+--.++.+.... -+..+|.|..+.-- .+|.-+|+.+-.=-+--.||.....++.-
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia~g--------ssV~Fwdaksf~~lKs~k~P~nV~SASL~- 233 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIAYG--------SSVKFWDAKSFGLLKSYKMPCNVESASLH- 233 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEecC--------ceeEEeccccccceeeccCcccccccccc-
Confidence 346777888877643322222222211 11235666555321 34555555443221222444333222111
Q ss_pred ECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCc--eEE--ECCeEEEEEccCCc-EEEEEeCC
Q 014222 263 YEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNP--SAS--LNRHLYALDCKDGC-KIRVYDEV 329 (428)
Q Consensus 263 ~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~--~~~--~~~~lyv~gG~~~~-~i~~yd~~ 329 (428)
-+..+||.||+. ..++.||..++. ++... ..+...+ ++. -+|.+|..|-.++. .+|.-.+.
T Consensus 234 P~k~~fVaGged---~~~~kfDy~Tge--Ei~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 234 PKKEFFVAGGED---FKVYKFDYNTGE--EIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceEEecCcc---eEEEEEeccCCc--eeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 144689999853 346889887775 22221 1122222 222 38999999987763 34444443
No 196
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=53.31 E-value=1.7e+02 Score=26.33 Aligned_cols=180 Identities=8% Similarity=-0.021 Sum_probs=84.5
Q ss_pred eEEEEECCCCceeeCCCCCcCCcceeeE--EECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE
Q 014222 185 RVIFYSARTNKWHRAPDMLRRRHFFGSC--VINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262 (428)
Q Consensus 185 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~ 262 (428)
.+-.||..++.=..+...-..+....++ ..+|+-...||.+ ..+.++|...-.-...-..+.+. ..++.
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------gt~kIWdlR~~~~qR~~~~~spV--n~vvl 132 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------GTVKIWDLRSLSCQRNYQHNSPV--NTVVL 132 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------ceEEEEeccCcccchhccCCCCc--ceEEe
Confidence 6788999887644333333344444333 3477877777764 46778887763222111111111 12222
Q ss_pred ECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCC-ceEE-ECCeEEEEEccCCcEEEEEeCCCCce-eeCccc
Q 014222 263 YEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRN-PSAS-LNRHLYALDCKDGCKIRVYDEVTDSW-SKHIDS 339 (428)
Q Consensus 263 ~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~-~~~~-~~~~lyv~gG~~~~~i~~yd~~~~~W-~~v~~~ 339 (428)
.-+.--++-|..+. .|.++|+.++.-+...- |...... +..+ -+|... ++..+....+++++-+++- +++.++
T Consensus 133 hpnQteLis~dqsg--~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 133 HPNQTELISGDQSG--NIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred cCCcceEEeecCCC--cEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEh
Confidence 22222223233322 36899999997665432 2222211 2333 345544 4444444678887665331 222211
Q ss_pred ccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 340 KMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.....+.+ ..--+....++|.++..+.+.. +.+|+.++
T Consensus 209 ~k~~ah~~-~il~C~lSPd~k~lat~ssdkt--v~iwn~~~ 246 (311)
T KOG0315|consen 209 HKFQAHNG-HILRCLLSPDVKYLATCSSDKT--VKIWNTDD 246 (311)
T ss_pred hheecccc-eEEEEEECCCCcEEEeecCCce--EEEEecCC
Confidence 11111110 0112344567777777665543 34454444
No 197
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.49 E-value=2e+02 Score=26.84 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=62.9
Q ss_pred cccEEEEEe-CCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcc--eeeEEECC-EEEEEccccCCCCCCCC
Q 014222 158 LGFGCAVLS-GCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHF--FGSCVINN-CLYVAGGENGGVHRSLR 233 (428)
Q Consensus 158 ~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~~-~iyv~GG~~~~~~~~~~ 233 (428)
..|++++.. ...+.+|+-.- -.-+.+||+.+.+=...-..+..|.. |++..-+| .+|..-... +....
T Consensus 6 RgH~~a~~p~~~~avafaRRP-----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~---~~g~G 77 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRP-----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY---ETGRG 77 (305)
T ss_pred cccceeeCCCCCeEEEEEeCC-----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc---CCCcE
Confidence 367777765 33677776543 34688999999875543333555554 44555444 566653322 33345
Q ss_pred eEEEEeCCCCceEEcCCCCC-CccceEEEEE-CC-EEEEE-ec
Q 014222 234 SAEVYDPNKNRWSFISDMST-AMVPFIGVVY-EG-KWFLK-GL 272 (428)
Q Consensus 234 ~v~~yd~~t~~W~~~~~~p~-~~~~~~~~~~-~g-~lyv~-Gg 272 (428)
.+-+||.. +...++...+. +.-.|-+... +| .|.|. ||
T Consensus 78 ~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 78 VIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 78899998 66777776654 3334555544 55 45555 44
No 198
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=52.17 E-value=42 Score=20.13 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=16.3
Q ss_pred ceEEECCeEEEEEccCCcEEEEEeCCC
Q 014222 304 PSASLNRHLYALDCKDGCKIRVYDEVT 330 (428)
Q Consensus 304 ~~~~~~~~lyv~gG~~~~~i~~yd~~~ 330 (428)
+.++.++++|+.+. ...++.+|+++
T Consensus 16 ~~~v~~g~vyv~~~--dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG--DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T--TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC--CCEEEEEeCCC
Confidence 34667888888765 34899999874
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=50.55 E-value=1.6e+02 Score=25.23 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=38.2
Q ss_pred CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecC
Q 014222 215 NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVY 294 (428)
Q Consensus 215 ~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~ 294 (428)
+.++.++-|.. ...+..||...+ .+..++........-.-+|++.++||.......++.||.. +.+.+.
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKIS 139 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEee
Confidence 45566665532 147889998633 3333333222222333478888887754333457899987 444443
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=48.98 E-value=2e+02 Score=25.83 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=67.2
Q ss_pred CCceeeCCCCCc-----CCccee-eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEE--C
Q 014222 193 TNKWHRAPDMLR-----RRHFFG-SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVY--E 264 (428)
Q Consensus 193 t~~W~~~~~~~~-----~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~ 264 (428)
...|+..+||.. |-.+.- ..--.|.|+..||. ..+++.|.++.+-+..-. ...-+-|+++.- +
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccC
Confidence 345877777643 222211 22235788888874 468899999988765321 112233444432 3
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCCeEecCC------CCcCCCCC--ceEEECCeEEEEEccCCcEEEEEeCCCCceeeC
Q 014222 265 GKWFLKGLGSHRQVLSEAYQPETDSWFPVYD------GMVAGWRN--PSASLNRHLYALDCKDGCKIRVYDEVTDSWSKH 336 (428)
Q Consensus 265 g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~------~~~~~~~~--~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v 336 (428)
+.|+ .|+++. ++-.+|.++.+=..+-. ...+.... .+...+..-.++||. ..+-.|+....+=+.+
T Consensus 169 ~qil-sG~EDG---tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG--p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 169 GQIL-SGAEDG---TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG--PKLSLWHLRSSESTCV 242 (325)
T ss_pred ccee-ecCCCc---cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC--CceeEEeccCCCceEE
Confidence 3332 233322 34578888776544321 11111222 344566666677763 3455566655555544
Q ss_pred cc
Q 014222 337 ID 338 (428)
Q Consensus 337 ~~ 338 (428)
-.
T Consensus 243 fp 244 (325)
T KOG0649|consen 243 FP 244 (325)
T ss_pred Ee
Confidence 33
No 201
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=48.83 E-value=2.9e+02 Score=27.62 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=52.5
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGS 211 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 211 (428)
..++.+++..+...+-..+-..+....-.+++...|+.+ +.|- +.-.+.+|++.+++-.+..- -.+..-++.
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgD------S~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L 293 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGD------SGGNILIWSKGTNRISKQVH-AHDGGVFSL 293 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-Eeec------CCceEEEEeCCCceEEeEee-ecCCceEEE
Confidence 467778998888766544444333233344455544333 3332 23368899998887665433 333444555
Q ss_pred EEEC-CEEEEEccccCCCCCCCCeEEEEe
Q 014222 212 CVIN-NCLYVAGGENGGVHRSLRSAEVYD 239 (428)
Q Consensus 212 ~~~~-~~iyv~GG~~~~~~~~~~~v~~yd 239 (428)
+.+. |+|.- ||.+ ..+..+|
T Consensus 294 ~~lr~GtllS-GgKD-------Rki~~Wd 314 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKD-------RKIILWD 314 (626)
T ss_pred EEecCccEee-cCcc-------ceEEecc
Confidence 5554 55555 8875 4666676
No 202
>PTZ00420 coronin; Provisional
Probab=48.80 E-value=3.2e+02 Score=28.14 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=69.3
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEE-ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCV-INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSF 247 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~ 247 (428)
.+++.||.++ .+.+||..+.+=.. .+.....-.++.. .+|.+++.++.+ ..+.+||+.+.+=
T Consensus 139 ~iLaSgS~Dg------tIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~-- 201 (568)
T PTZ00420 139 YIMCSSGFDS------FVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEI-- 201 (568)
T ss_pred eEEEEEeCCC------eEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcE--
Confidence 4556666542 57788987764111 1111111112222 367777776643 5789999987642
Q ss_pred cCCCC--CCccceEEEE-----ECCEEEEEecCCC-CceeEEEEeCCC-CCeEecCCCCcCCCCCce-EE---ECCeEEE
Q 014222 248 ISDMS--TAMVPFIGVV-----YEGKWFLKGLGSH-RQVLSEAYQPET-DSWFPVYDGMVAGWRNPS-AS---LNRHLYA 314 (428)
Q Consensus 248 ~~~~p--~~~~~~~~~~-----~~g~lyv~Gg~~~-~~~~i~~yd~~~-~~W~~~~~~~~~~~~~~~-~~---~~~~lyv 314 (428)
+..+. ........+. -++...+.+|.+. ....+..||..+ ..-..... . ....... .. -.+.+|+
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-l-d~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-I-DNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-e-cCCccceEEeeeCCCCCEEE
Confidence 21111 1111111111 2444444444332 223578889874 22111100 0 0000111 11 2477888
Q ss_pred EEccCCcEEEEEeCCCCceeeC
Q 014222 315 LDCKDGCKIRVYDEVTDSWSKH 336 (428)
Q Consensus 315 ~gG~~~~~i~~yd~~~~~W~~v 336 (428)
.|..+ ..|..|+...+.-..+
T Consensus 280 sGkGD-~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 280 IGKGD-GNCRYYQHSLGSIRKV 300 (568)
T ss_pred EEECC-CeEEEEEccCCcEEee
Confidence 87544 4788888876643333
No 203
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.07 E-value=3.6e+02 Score=28.46 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=87.8
Q ss_pred EEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeC
Q 014222 161 GCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDP 240 (428)
Q Consensus 161 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 240 (428)
+.++..+ ++.++.|.+ .++-++|..|.+..+. ++.. +-+++..+.|.-|++-|... ..+.+||.
T Consensus 378 sl~vS~d-~~~~~Sga~------~SikiWn~~t~kciRT--i~~~-y~l~~~Fvpgd~~Iv~G~k~------Gel~vfdl 441 (888)
T KOG0306|consen 378 SLCVSSD-SILLASGAG------ESIKIWNRDTLKCIRT--ITCG-YILASKFVPGDRYIVLGTKN------GELQVFDL 441 (888)
T ss_pred EEEeecC-ceeeeecCC------CcEEEEEccCcceeEE--eccc-cEEEEEecCCCceEEEeccC------CceEEEEe
Confidence 4455555 566655432 3577788776554321 2222 44555566554455444432 47888988
Q ss_pred CCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCC---CeEe---cCC----CCcCCCCCceEEECC
Q 014222 241 NKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETD---SWFP---VYD----GMVAGWRNPSASLNR 310 (428)
Q Consensus 241 ~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~---~W~~---~~~----~~~~~~~~~~~~~~~ 310 (428)
.+-.--..-+-..+........-+++-++.|+.+. ....|-|-.... +=++ +.. ......-+..+.-++
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 76532111111122222233344677677766432 222222211111 1111 100 000011111123368
Q ss_pred eEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeec
Q 014222 311 HLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSK 377 (428)
Q Consensus 311 ~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd 377 (428)
++.+++-.+ +.+.+|-.++-..-.- --....|. -+--..++.++.+.|+.+..-.+|--|
T Consensus 521 k~LaVsLLd-nTVkVyflDtlKFfls-LYGHkLPV-----~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 521 KLLAVSLLD-NTVKVYFLDTLKFFLS-LYGHKLPV-----LSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cEEEEEecc-CeEEEEEecceeeeee-ecccccce-----eEEeccCCcCeEEeccCCCceEEeccc
Confidence 888888665 4777776665443210 00001111 022346788999998866554444333
No 204
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=47.37 E-value=2.3e+02 Score=26.00 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=84.8
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEc
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFI 248 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~ 248 (428)
...+.|++++ .+-.+|..+.+=++.-.-+....-..+..-++.-.|.|..+ +++..||...+.=-.+
T Consensus 76 ~~alS~swD~------~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD-------kTiklwnt~g~ck~t~ 142 (315)
T KOG0279|consen 76 NFALSASWDG------TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD-------KTIKLWNTLGVCKYTI 142 (315)
T ss_pred ceEEeccccc------eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc-------ceeeeeeecccEEEEE
Confidence 5666666553 46677877764322111111111111222356667766654 5667777666543222
Q ss_pred CCCCCCccceEEEEE--C-CEEEEE-ecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCc--eEEECCeEEEEEccCCcE
Q 014222 249 SDMSTAMVPFIGVVY--E-GKWFLK-GLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNP--SASLNRHLYALDCKDGCK 322 (428)
Q Consensus 249 ~~~p~~~~~~~~~~~--~-g~lyv~-Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~--~~~~~~~lyv~gG~~~~~ 322 (428)
..-.. +...+.+.+ + ...|++ ++.+ .++-++|..+-+-... .+....+.. .+..+|.|...||.++ .
T Consensus 143 ~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D---ktvKvWnl~~~~l~~~--~~gh~~~v~t~~vSpDGslcasGgkdg-~ 215 (315)
T KOG0279|consen 143 HEDSH-REWVSCVRFSPNESNPIIVSASWD---KTVKVWNLRNCQLRTT--FIGHSGYVNTVTVSPDGSLCASGGKDG-E 215 (315)
T ss_pred ecCCC-cCcEEEEEEcCCCCCcEEEEccCC---ceEEEEccCCcchhhc--cccccccEEEEEECCCCCEEecCCCCc-e
Confidence 22111 222222222 2 133443 4432 2345677765542211 111111111 2346999999999886 6
Q ss_pred EEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 323 IRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 323 i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
++.+|.+..+= +..+.... .-.+++...++..+.-+.... |.++|.++
T Consensus 216 ~~LwdL~~~k~--lysl~a~~------~v~sl~fspnrywL~~at~~s--IkIwdl~~ 263 (315)
T KOG0279|consen 216 AMLWDLNEGKN--LYSLEAFD------IVNSLCFSPNRYWLCAATATS--IKIWDLES 263 (315)
T ss_pred EEEEEccCCce--eEeccCCC------eEeeEEecCCceeEeeccCCc--eEEEeccc
Confidence 66677654432 22222111 114555555666655444332 56677666
No 205
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=47.12 E-value=2.4e+02 Score=26.15 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=34.0
Q ss_pred EEEEEeeeCCCCCCCceEEE-EECCCCceeeCCCCCcCCcceeeEEE------CCEEEEEccccCCCCCCCCeEEEEeCC
Q 014222 169 HLYLFGGKDPLKGSMRRVIF-YSARTNKWHRAPDMLRRRHFFGSCVI------NNCLYVAGGENGGVHRSLRSAEVYDPN 241 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~v~~yd~~ 241 (428)
..++.||.+.. --+|. |.-..|.|..- +|..|++ ++...+..|.+ +.+..||.+
T Consensus 60 s~~aSgG~Dr~----I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-------k~v~~wD~~ 120 (338)
T KOG0265|consen 60 SCFASGGSDRA----IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-------KTVRGWDAE 120 (338)
T ss_pred CeEeecCCcce----EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-------ceEEEEecc
Confidence 57778886521 12332 55567777643 4444443 33344444433 688999999
Q ss_pred CCceE
Q 014222 242 KNRWS 246 (428)
Q Consensus 242 t~~W~ 246 (428)
+.+=.
T Consensus 121 tG~~~ 125 (338)
T KOG0265|consen 121 TGKRI 125 (338)
T ss_pred cceee
Confidence 88643
No 206
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.95 E-value=3.1e+02 Score=27.47 Aligned_cols=210 Identities=11% Similarity=0.096 Sum_probs=93.5
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCC-cceee
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRR-HFFGS 211 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r-~~~~~ 211 (428)
.+.+||..+.+ .+..+... .....++...++ .+...|..++ .+..+|....+=.. ..+...+ .-++.
T Consensus 240 ~v~iwD~~~~k--~~~~~~~~--h~~rvg~laW~~-~~lssGsr~~------~I~~~dvR~~~~~~-~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 240 TVQIWDVKEQK--KTRTLRGS--HASRVGSLAWNS-SVLSSGSRDG------KILNHDVRISQHVV-STLQGHRQEVCGL 307 (484)
T ss_pred eEEEEehhhcc--ccccccCC--cCceeEEEeccC-ceEEEecCCC------cEEEEEEecchhhh-hhhhcccceeeee
Confidence 46666665443 23333321 122334445555 6777776553 35555544332110 0111111 11111
Q ss_pred EE-ECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE-------ECCEEEEEecCCCCceeEEEE
Q 014222 212 CV-INNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV-------YEGKWFLKGLGSHRQVLSEAY 283 (428)
Q Consensus 212 ~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~-------~~g~lyv~Gg~~~~~~~i~~y 283 (428)
.. .++...+.||.+ +.+.+||..+..+. .....|.+++ ....|...||+... ..+..+
T Consensus 308 kws~d~~~lASGgnD-------N~~~Iwd~~~~~p~------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fw 373 (484)
T KOG0305|consen 308 KWSPDGNQLASGGND-------NVVFIWDGLSPEPK------FTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFW 373 (484)
T ss_pred EECCCCCeeccCCCc-------cceEeccCCCcccc------EEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEE
Confidence 11 245556666653 67888888333221 1111222222 25556677664322 235677
Q ss_pred eCCCCCeEecCCCCcCCCCCceEE---ECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCe
Q 014222 284 QPETDSWFPVYDGMVAGWRNPSAS---LNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGK 360 (428)
Q Consensus 284 d~~~~~W~~~~~~~~~~~~~~~~~---~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~ 360 (428)
|..+++=.. . ...+....... ..+.|....|+..+.|.+|+..+ -..+..+..+..+. .+-+...++.
T Consensus 374 n~~~g~~i~--~-vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RV----l~la~SPdg~ 444 (484)
T KOG0305|consen 374 NTNTGARID--S-VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRV----LYLALSPDGE 444 (484)
T ss_pred EcCCCcEec--c-cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCccee----EEEEECCCCC
Confidence 776554211 1 11111111111 14567788888777766666544 22333333232222 2445555555
Q ss_pred EEEEeCCCe-EEEEEeec
Q 014222 361 LCIIRNNMS-ISLVDVSK 377 (428)
Q Consensus 361 lyv~GG~~~-~~~v~~yd 377 (428)
-++.|+.+. ...-.+|+
T Consensus 445 ~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 445 TIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEEecccCcEEeccccC
Confidence 555555444 34333454
No 207
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=46.78 E-value=2.9e+02 Score=27.11 Aligned_cols=58 Identities=7% Similarity=-0.000 Sum_probs=31.5
Q ss_pred ccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee---eEEECCEEEEEcccc
Q 014222 159 GFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG---SCVINNCLYVAGGEN 225 (428)
Q Consensus 159 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~---~~~~~~~iyv~GG~~ 225 (428)
.++++..+.+ -|++||.- ..++|.+...|+.--.+- .+.+... ...-++..++.||.+
T Consensus 84 v~al~s~n~G-~~l~ag~i-----~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 84 VHALASSNLG-YFLLAGTI-----SGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred eeeeecCCCc-eEEEeecc-----cCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCC
Confidence 4566666664 67776632 236888888777532221 1122111 122367788878765
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.18 E-value=1.6e+02 Score=28.34 Aligned_cols=134 Identities=19% Similarity=0.110 Sum_probs=67.9
Q ss_pred CceEEEEECCCCce-eeCCCCCcCCcceeeEEE---CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccce
Q 014222 183 MRRVIFYSARTNKW-HRAPDMLRRRHFFGSCVI---NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF 258 (428)
Q Consensus 183 ~~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~ 258 (428)
...+.+.|..|++- .+++.. ...|..... +..+|+.+. + ..+-++|+.+.+ .+...+.+....
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d-------g~vsviD~~~~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D-------GTVSVIDLATGK--VVATIKVGGNPR 81 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T-------SEEEEEETTSSS--EEEEEE-SSEEE
T ss_pred CCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C-------CeEEEEECCccc--EEEEEecCCCcc
Confidence 34788999888753 233322 222443332 357899753 2 478999999987 444444444333
Q ss_pred EEE-EECCEEEEEecCCCCceeEEEEeCCCCCeEe-cCC--CCc---CCCCCce-EEECCeEEEEEccCCcEEEEEeCCC
Q 014222 259 IGV-VYEGKWFLKGLGSHRQVLSEAYQPETDSWFP-VYD--GMV---AGWRNPS-ASLNRHLYALDCKDGCKIRVYDEVT 330 (428)
Q Consensus 259 ~~~-~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~-~~~--~~~---~~~~~~~-~~~~~~lyv~gG~~~~~i~~yd~~~ 330 (428)
.++ .-+|+..+.+... ...+..+|.++.+=.+ ++. .+. ..+..+. ....+..|++.-.+...|++.|...
T Consensus 82 ~i~~s~DG~~~~v~n~~--~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYE--PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEE--TTTEEEEEEEE--TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEcCCCCEEEEEecC--CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 333 3477644444222 2246788987765332 211 111 1111111 1235666887766667899998765
Q ss_pred C
Q 014222 331 D 331 (428)
Q Consensus 331 ~ 331 (428)
.
T Consensus 160 ~ 160 (369)
T PF02239_consen 160 P 160 (369)
T ss_dssp S
T ss_pred c
Confidence 4
No 209
>PRK10115 protease 2; Provisional
Probab=43.66 E-value=4.2e+02 Score=28.04 Aligned_cols=199 Identities=8% Similarity=0.027 Sum_probs=99.4
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEE-CC-EEEEEccccCCCCCCCCeEEEEeCCCCce-
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVI-NN-CLYVAGGENGGVHRSLRSAEVYDPNKNRW- 245 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~t~~W- 245 (428)
+.++++- +.......++++.|..++.. ++....... ..++.. ++ .+|.. ..... ......++.++..|+.-
T Consensus 139 ~~la~~~-d~~G~E~~~l~v~d~~tg~~--l~~~i~~~~-~~~~w~~D~~~~~y~-~~~~~-~~~~~~v~~h~lgt~~~~ 212 (686)
T PRK10115 139 TIMALAE-DFLSRRQYGIRFRNLETGNW--YPELLDNVE-PSFVWANDSWTFYYV-RKHPV-TLLPYQVWRHTIGTPASQ 212 (686)
T ss_pred CEEEEEe-cCCCcEEEEEEEEECCCCCC--CCccccCcc-eEEEEeeCCCEEEEE-EecCC-CCCCCEEEEEECCCChhH
Confidence 5555553 22222456789999988742 222111111 223333 44 44443 32211 12346899999988832
Q ss_pred -EEcCCCCCCccceEEEEE-CCEEEEEecCCCCceeEEEEeC--CCCCeEecCCCCcCCCCCceEEECCeEEEEEcc--C
Q 014222 246 -SFISDMSTAMVPFIGVVY-EGKWFLKGLGSHRQVLSEAYQP--ETDSWFPVYDGMVAGWRNPSASLNRHLYALDCK--D 319 (428)
Q Consensus 246 -~~~~~~p~~~~~~~~~~~-~g~lyv~Gg~~~~~~~i~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~--~ 319 (428)
..+-.-+........... +++..++.........++.|+. .+..|..+..... .........++.+|+.--. .
T Consensus 213 d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ly~~tn~~~~ 291 (686)
T PRK10115 213 DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRK-DHEYSLDHYQHRFYLRSNRHGK 291 (686)
T ss_pred CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCC-CCEEEEEeCCCEEEEEEcCCCC
Confidence 222111112222223333 5554445433322334667773 2344433322122 2112223456888888532 2
Q ss_pred CcEEEEEeCC-CCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 320 GCKIRVYDEV-TDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 320 ~~~i~~yd~~-~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
...+...+.. ...|+.+-.... ... --.+...++.|++..-......+.++|..+
T Consensus 292 ~~~l~~~~~~~~~~~~~l~~~~~--~~~----i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEELIPPRE--NIM----LEGFTLFTDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred CceEEEecCCCcccCeEEECCCC--CCE----EEEEEEECCEEEEEEEeCCEEEEEEEcCCC
Confidence 2467777776 578988754211 111 123444588898887777777788888765
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=43.30 E-value=89 Score=26.87 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=38.3
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe-EEEEEeecCCC
Q 014222 309 NRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS-ISLVDVSKSNG 380 (428)
Q Consensus 309 ~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~v~~yd~~~ 380 (428)
++++.++-|.....+..||.+.+ .+..++.. . .....-..+|++++++|... ...+.+||..+
T Consensus 71 g~~favi~g~~~~~v~lyd~~~~---~i~~~~~~---~---~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKGK---KIFSFGTQ---P---RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCEEEEEEccCCcccEEEcCccc---EeEeecCC---C---ceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 45676776654458999999733 33222211 1 12344566788888888544 35688899765
No 211
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=42.84 E-value=2.8e+02 Score=25.68 Aligned_cols=187 Identities=13% Similarity=0.159 Sum_probs=89.7
Q ss_pred cccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCC----CCCcCCcceeeEEE-C-CEEEEEccccCCCCCC
Q 014222 158 LGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAP----DMLRRRHFFGSCVI-N-NCLYVAGGENGGVHRS 231 (428)
Q Consensus 158 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~----~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~ 231 (428)
+-..+|....+.....||.+ +..-+|+..+..=.... .++....+.+.+.+ + +.|..-.|-
T Consensus 99 WVMtCA~sPSg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------- 165 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------- 165 (343)
T ss_pred eEEEEEECCCCCeEEecCcC------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC-------
Confidence 33444444333688888875 35668887755322221 12233333344433 3 344433231
Q ss_pred CCeEEEEeCCCCceEEcCCCCCC-ccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceE-EE-
Q 014222 232 LRSAEVYDPNKNRWSFISDMSTA-MVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSA-SL- 308 (428)
Q Consensus 232 ~~~v~~yd~~t~~W~~~~~~p~~-~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~- 308 (428)
...-.+|.++.+=...=.-..+ .......-.+++.||.||.... ...+|.....=. ..++.-.....++ .+
T Consensus 166 -~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~---aklWD~R~~~c~--qtF~ghesDINsv~ffP 239 (343)
T KOG0286|consen 166 -MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS---AKLWDVRSGQCV--QTFEGHESDINSVRFFP 239 (343)
T ss_pred -ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc---eeeeeccCccee--EeecccccccceEEEcc
Confidence 4677788888764332110000 0011111127788999875432 346777665321 1111111111122 22
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCC
Q 014222 309 NRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNM 368 (428)
Q Consensus 309 ~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 368 (428)
+|.-|+.|- +......||+..++=-.+-.-+. ...+.....+...|+|++.|..+
T Consensus 240 ~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~~----~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 240 SGDAFATGS-DDATCRLYDLRADQELAVYSHDS----IICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred CCCeeeecC-CCceeEEEeecCCcEEeeeccCc----ccCCceeEEEcccccEEEeeecC
Confidence 555555553 44578889988765333322111 11112355667788988887543
No 212
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=42.51 E-value=2.6e+02 Score=25.19 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=88.1
Q ss_pred CCEEEEEe--eeCCCCCCCce-EEEEECC-CCceeeCCCCCcC--------CcceeeEEECCEEEEEccccCCCCCCCCe
Q 014222 167 GCHLYLFG--GKDPLKGSMRR-VIFYSAR-TNKWHRAPDMLRR--------RHFFGSCVINNCLYVAGGENGGVHRSLRS 234 (428)
Q Consensus 167 ~~~lyv~G--G~~~~~~~~~~-v~~yd~~-t~~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 234 (428)
+++|+++- +.......... .+..... -.+|.....++.. -....+..-+|.+++.. +... ......
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~-~~~~~~ 135 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHES-GGSFSA 135 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEES-SCEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eecc-ccCcce
Confidence 44888886 22221111112 2344444 4579876543211 11112334478888872 2111 111233
Q ss_pred EEEEeCC-CCceEEcCCCCCC-ccce-EEEE-ECCEEEEEecCCCCceeEEEEeCC-CCCeEecCCC-CcCCCCCce-EE
Q 014222 235 AEVYDPN-KNRWSFISDMSTA-MVPF-IGVV-YEGKWFLKGLGSHRQVLSEAYQPE-TDSWFPVYDG-MVAGWRNPS-AS 307 (428)
Q Consensus 235 v~~yd~~-t~~W~~~~~~p~~-~~~~-~~~~-~~g~lyv~Gg~~~~~~~i~~yd~~-~~~W~~~~~~-~~~~~~~~~-~~ 307 (428)
...|... -.+|+.....+.. .... +.+. -+|+||++-...........+... -.+|+..... .+....... +.
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~ 215 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVR 215 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEE
T ss_pred EEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCcccCCceEEE
Confidence 4444444 4579887765432 2222 2222 378999885432112333444444 3479975421 111111112 22
Q ss_pred -ECCeEEEEEccC--CcEE--EEEeCCCCceeeCccccccc-CCcccccceEEEEe-CCeEEE
Q 014222 308 -LNRHLYALDCKD--GCKI--RVYDEVTDSWSKHIDSKMHL-GNSRALEAAALVPL-NGKLCI 363 (428)
Q Consensus 308 -~~~~lyv~gG~~--~~~i--~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~~~~~~-~~~lyv 363 (428)
-+++++++.... ...+ ++-.-...+|.....+.... ... ....++.. +++|||
T Consensus 216 ~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~---~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 216 LSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDS---GYPSLTQLPDGKLYI 275 (275)
T ss_dssp CTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCE---EEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcE---ECCeeEEeCCCcCCC
Confidence 267888887631 2233 33344477999876554322 111 23444444 579886
No 213
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=42.09 E-value=3.5e+02 Score=26.61 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=90.4
Q ss_pred cEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcce-eeEEEC--CEEEEEccccCCCCCCCCeEE
Q 014222 160 FGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFF-GSCVIN--NCLYVAGGENGGVHRSLRSAE 236 (428)
Q Consensus 160 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~~~~--~~iyv~GG~~~~~~~~~~~v~ 236 (428)
.++++..+++.+++||.+ +.+.++|+.|..-.+. +...|... +.+.-. +.+|..+- + .++-
T Consensus 206 l~~avS~Dgkylatgg~d------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~-D-------rsvk 269 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRD------RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA-D-------RSVK 269 (479)
T ss_pred EEEEEcCCCcEEEecCCC------ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec-C-------CceE
Confidence 455665555899999865 3577888877653332 22222221 222222 35665432 1 4566
Q ss_pred EEeCCCCceEEcCCCCCCccceEE------EEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECC
Q 014222 237 VYDPNKNRWSFISDMSTAMVPFIG------VVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNR 310 (428)
Q Consensus 237 ~yd~~t~~W~~~~~~p~~~~~~~~------~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 310 (428)
+|+.+.... +.. .++|.. +.-.++...+||.+. ++..|+...++ +.+-. .....--.++.+++
T Consensus 270 vw~~~~~s~--vet----lyGHqd~v~~IdaL~reR~vtVGgrDr---T~rlwKi~ees-qlifr-g~~~sidcv~~In~ 338 (479)
T KOG0299|consen 270 VWSIDQLSY--VET----LYGHQDGVLGIDALSRERCVTVGGRDR---TVRLWKIPEES-QLIFR-GGEGSIDCVAFIND 338 (479)
T ss_pred EEehhHhHH--HHH----HhCCccceeeechhcccceEEeccccc---eeEEEeccccc-eeeee-CCCCCeeeEEEecc
Confidence 666554432 111 222221 222456666666432 33455542222 11111 11111123456788
Q ss_pred eEEEEEccCCcEEEEEeCCCCceeeCccc-----cc--ccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 311 HLYALDCKDGCKIRVYDEVTDSWSKHIDS-----KM--HLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 311 ~lyv~gG~~~~~i~~yd~~~~~W~~v~~~-----~~--~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.=|+.|..++ .|..++..++.=--+... +. +.... .+...-++..+..|+..|..++.-.+|.-....
T Consensus 339 ~HfvsGSdnG-~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~-~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 339 EHFVSGSDNG-SIALWSLLKKKPLFTSRLAHGVIPELDPVNGN-FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cceeeccCCc-eEEEeeecccCceeEeeccccccCCccccccc-cceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 8888887665 666666555431111110 10 01000 123344555666777777665555555555443
No 214
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.07 E-value=3.1e+02 Score=25.66 Aligned_cols=235 Identities=14% Similarity=0.060 Sum_probs=123.1
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEe-CCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCce
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQP-LPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKW 196 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 196 (428)
.+...+|+. ....-..+||+.+++-.. +.+.+.. .-++|++.+.+|..+|..=.. .....--+-+||.. +..
T Consensus 16 ~~~avafaR--RPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd--~~~g~G~IgVyd~~-~~~ 88 (305)
T PF07433_consen 16 RPEAVAFAR--RPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND--YETGRGVIGVYDAA-RGY 88 (305)
T ss_pred CCeEEEEEe--CCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc--cCCCcEEEEEEECc-CCc
Confidence 456667763 333467789999887442 3332221 235677777778778877332 22234578899988 677
Q ss_pred eeCCCCCcC-CcceeeEEE-CC-EEEEE-ccccCC----C-----CCCCCeEEEEeCCCCceEEcCCC----CCCccceE
Q 014222 197 HRAPDMLRR-RHFFGSCVI-NN-CLYVA-GGENGG----V-----HRSLRSAEVYDPNKNRWSFISDM----STAMVPFI 259 (428)
Q Consensus 197 ~~~~~~~~~-r~~~~~~~~-~~-~iyv~-GG~~~~----~-----~~~~~~v~~yd~~t~~W~~~~~~----p~~~~~~~ 259 (428)
.++...+.. ..-|-+..+ ++ .|.|. ||.... . +....++-..|..+.+-...-.+ ..--..|-
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 777666543 223344444 34 33333 554311 0 11223555667877653322223 22223344
Q ss_pred EEEECCEEEEEe---cCC-CCceeEEEEeCCCCCeEecCCCC----cCCCCCceEEE--CCeEEEEEccCCcEEEEEeCC
Q 014222 260 GVVYEGKWFLKG---LGS-HRQVLSEAYQPETDSWFPVYDGM----VAGWRNPSASL--NRHLYALDCKDGCKIRVYDEV 329 (428)
Q Consensus 260 ~~~~~g~lyv~G---g~~-~~~~~i~~yd~~~~~W~~~~~~~----~~~~~~~~~~~--~~~lyv~gG~~~~~i~~yd~~ 329 (428)
++.-+|.+.+-. |.. .....+..++.... -+.+..+. ....+..++.. ++.++.+..-.++.+.+||..
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 555566655432 111 11223444443332 22222111 11123333333 445666655555689999999
Q ss_pred CCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 330 TDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 330 ~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
+..|.....++ ..++++..++...+..|...
T Consensus 248 tg~~~~~~~l~---------D~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 248 TGRLLGSVPLP---------DACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred CCCEeeccccC---------ceeeeeecCCceEEeCCCcc
Confidence 99999887654 23677777777666666544
No 215
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=40.57 E-value=3.7e+02 Score=26.45 Aligned_cols=133 Identities=9% Similarity=0.122 Sum_probs=62.4
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccce-EEEEEC--CEEEEEecCCCCceeEEEEeCCC
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF-IGVVYE--GKWFLKGLGSHRQVLSEAYQPET 287 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~-~~~~~~--g~lyv~Gg~~~~~~~i~~yd~~~ 287 (428)
++..+|+.++.||.+ ..+.++|+.|..= +..++.-|... +.+.-. ..+|..+-+ .++-.|+.+.
T Consensus 209 avS~Dgkylatgg~d-------~~v~Iw~~~t~eh--v~~~~ghr~~V~~L~fr~gt~~lys~s~D----rsvkvw~~~~ 275 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRD-------RHVQIWDCDTLEH--VKVFKGHRGAVSSLAFRKGTSELYSASAD----RSVKVWSIDQ 275 (479)
T ss_pred EEcCCCcEEEecCCC-------ceEEEecCcccch--hhcccccccceeeeeeecCccceeeeecC----CceEEEehhH
Confidence 344589999999985 5778888877642 22222222211 122222 245554321 1123333332
Q ss_pred CCeEecCCCCcCCCCCce----EEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEE
Q 014222 288 DSWFPVYDGMVAGWRNPS----ASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCI 363 (428)
Q Consensus 288 ~~W~~~~~~~~~~~~~~~----~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv 363 (428)
... +.. +. +..... +.-..+...+||.+. .+..|+.... =+.+-. + ..+ .--+++.+++.=||
T Consensus 276 ~s~--vet-ly-GHqd~v~~IdaL~reR~vtVGgrDr-T~rlwKi~ee-sqlifr-g-~~~-----sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 276 LSY--VET-LY-GHQDGVLGIDALSRERCVTVGGRDR-TVRLWKIPEE-SQLIFR-G-GEG-----SIDCVAFINDEHFV 342 (479)
T ss_pred hHH--HHH-Hh-CCccceeeechhcccceEEeccccc-eeEEEecccc-ceeeee-C-CCC-----CeeeEEEeccccee
Confidence 221 111 11 111111 123578888898875 5666554221 111111 0 001 11456667888888
Q ss_pred EeCCCe
Q 014222 364 IRNNMS 369 (428)
Q Consensus 364 ~GG~~~ 369 (428)
.|+.++
T Consensus 343 sGSdnG 348 (479)
T KOG0299|consen 343 SGSDNG 348 (479)
T ss_pred eccCCc
Confidence 887655
No 216
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=40.03 E-value=3.1e+02 Score=25.47 Aligned_cols=143 Identities=9% Similarity=0.076 Sum_probs=65.4
Q ss_pred CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEE--EEecCCCCceeEEEEeCCCCCeEe
Q 014222 215 NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWF--LKGLGSHRQVLSEAYQPETDSWFP 292 (428)
Q Consensus 215 ~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~ly--v~Gg~~~~~~~i~~yd~~~~~W~~ 292 (428)
+|.....||.+ +.+..||+.+++=..+..--.+.. ++--+++..| ++.|. -..++-.+|+...+ .
T Consensus 83 dgskVf~g~~D-------k~~k~wDL~S~Q~~~v~~Hd~pvk--t~~wv~~~~~~cl~TGS--WDKTlKfWD~R~~~--p 149 (347)
T KOG0647|consen 83 DGSKVFSGGCD-------KQAKLWDLASGQVSQVAAHDAPVK--TCHWVPGMNYQCLVTGS--WDKTLKFWDTRSSN--P 149 (347)
T ss_pred CCceEEeeccC-------CceEEEEccCCCeeeeeeccccee--EEEEecCCCcceeEecc--cccceeecccCCCC--e
Confidence 34444446654 688999999997666543222211 1122233322 22221 01123344544221 1
Q ss_pred cCC-CCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCc--eeeCcccccccCCcccccceEEEEeCCeEEEEeCCCe
Q 014222 293 VYD-GMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDS--WSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMS 369 (428)
Q Consensus 293 ~~~-~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 369 (428)
+.. .++.+.+ ++-+..-+.+++-. +..|.+|+++... .+.+.. |... .. -+.++..++..|.+|+.++
T Consensus 150 v~t~~LPeRvY--a~Dv~~pm~vVata-~r~i~vynL~n~~te~k~~~S-pLk~-Q~----R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 150 VATLQLPERVY--AADVLYPMAVVATA-ERHIAVYNLENPPTEFKRIES-PLKW-QT----RCVACFQDKDGFALGSIEG 220 (347)
T ss_pred eeeeeccceee--ehhccCceeEEEec-CCcEEEEEcCCCcchhhhhcC-cccc-ee----eEEEEEecCCceEeeeecc
Confidence 111 1222211 22222333344322 3478899987653 333322 2111 11 2555666778889998776
Q ss_pred EEEEEeecCC
Q 014222 370 ISLVDVSKSN 379 (428)
Q Consensus 370 ~~~v~~yd~~ 379 (428)
...+..-|..
T Consensus 221 rv~iq~id~~ 230 (347)
T KOG0647|consen 221 RVAIQYIDDP 230 (347)
T ss_pred eEEEEecCCC
Confidence 5555544543
No 217
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.24 E-value=4.1e+02 Score=26.59 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=46.3
Q ss_pred EEEEeCCCC----CeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEE
Q 014222 280 SEAYQPETD----SWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALV 355 (428)
Q Consensus 280 i~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~ 355 (428)
+..||.... .|.+.-..|..+ ...+..+..|++.=|++ .+|+.||.....-...-.-..++ ...++
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~g--icfspsne~l~vsVG~D-kki~~yD~~s~~s~~~l~y~~Pl-------stvaf 258 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRG--ICFSPSNEALLVSVGYD-KKINIYDIRSQASTDRLTYSHPL-------STVAF 258 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCc--ceecCCccceEEEeccc-ceEEEeecccccccceeeecCCc-------ceeee
Confidence 446666443 355443323221 22334577888887877 48999998865433321111111 13334
Q ss_pred EeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 356 PLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 356 ~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.-+|.+++.|... ..+..||...
T Consensus 259 ~~~G~~L~aG~s~--G~~i~YD~R~ 281 (673)
T KOG4378|consen 259 SECGTYLCAGNSK--GELIAYDMRS 281 (673)
T ss_pred cCCceEEEeecCC--ceEEEEeccc
Confidence 4455666665432 3466777665
No 218
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=38.88 E-value=4.7e+02 Score=27.15 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=34.6
Q ss_pred EEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCC--CcCCcceeeEEE-CCEEEEEccc
Q 014222 161 GCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDM--LRRRHFFGSCVI-NNCLYVAGGE 224 (428)
Q Consensus 161 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~ 224 (428)
++|.........+|-. ...+++||+.. .|...+.+ +..|+--+.+-. +++||-+|+.
T Consensus 30 slA~s~kS~~lAvsRt------~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s 89 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRT------DGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS 89 (691)
T ss_pred EEEEeccCCceeeecc------CCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCC
Confidence 4444433345555433 33689999876 67665444 444555455555 7899998875
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.03 E-value=3.8e+02 Score=25.83 Aligned_cols=143 Identities=10% Similarity=0.089 Sum_probs=71.8
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCC--CceeeCCC------CCcCCcceeeEEECC---EEEEEccccCCCCCCCCeEEE
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSART--NKWHRAPD------MLRRRHFFGSCVINN---CLYVAGGENGGVHRSLRSAEV 237 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~------~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~v~~ 237 (428)
.|+.+||... .+.+.+||..+ ..|+.-.. |..|.+...+..+.+ .-++.+-. ...+-.
T Consensus 162 ~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~-------~hqvR~ 230 (412)
T KOG3881|consen 162 YIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR-------YHQVRL 230 (412)
T ss_pred ceEecCchhc----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec-------ceeEEE
Confidence 5888888652 34666666654 45765322 223444444444443 23332221 357888
Q ss_pred EeCCCCceEEcCCCCC---CccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCc--eE-EECC-
Q 014222 238 YDPNKNRWSFISDMST---AMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNP--SA-SLNR- 310 (428)
Q Consensus 238 yd~~t~~W~~~~~~p~---~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~--~~-~~~~- 310 (428)
||+...+ +.+...+. +....+...-++.||+- .. ...+..||....+--... . .+...+ .+ ...+
T Consensus 231 YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~g--n~--~g~l~~FD~r~~kl~g~~--~-kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 231 YDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTG--NT--KGQLAKFDLRGGKLLGCG--L-KGITGSIRSIHCHPTH 302 (412)
T ss_pred ecCcccC-cceeEeccccCcceeeeecCCCcEEEEe--cc--cchhheecccCceeeccc--c-CCccCCcceEEEcCCC
Confidence 9998654 33333222 22222222334455542 21 112568888776633221 1 111111 22 3333
Q ss_pred eEEEEEccCCcEEEEEeCCCC
Q 014222 311 HLYALDCKDGCKIRVYDEVTD 331 (428)
Q Consensus 311 ~lyv~gG~~~~~i~~yd~~~~ 331 (428)
.+...+|.+. .+.+||.+++
T Consensus 303 ~~las~GLDR-yvRIhD~ktr 322 (412)
T KOG3881|consen 303 PVLASCGLDR-YVRIHDIKTR 322 (412)
T ss_pred ceEEeeccce-eEEEeecccc
Confidence 5667777764 7899999984
No 220
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.40 E-value=3.5e+02 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred CeEEEEEccC------CcEEEEEeCCCCceeeCcccc
Q 014222 310 RHLYALDCKD------GCKIRVYDEVTDSWSKHIDSK 340 (428)
Q Consensus 310 ~~lyv~gG~~------~~~i~~yd~~~~~W~~v~~~~ 340 (428)
..++.+|-.. ...||.|+...+.|.++..++
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 4566776544 235889999999999998876
No 221
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=37.38 E-value=2.2e+02 Score=22.96 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=38.6
Q ss_pred CEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEEE---CCEEEEEecCCCCceeEEEEeCCCC--Ce
Q 014222 216 NCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVY---EGKWFLKGLGSHRQVLSEAYQPETD--SW 290 (428)
Q Consensus 216 ~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~---~g~lyv~Gg~~~~~~~i~~yd~~~~--~W 290 (428)
..+.++|.. ..+.+||...++=-...+++.+........+ .+.+.++|| ..++.-||-+-+ -|
T Consensus 64 ~D~LliGt~--------t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG----ncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 64 RDCLLIGTQ--------TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG----NCSIQGFDYEGNEIFW 131 (136)
T ss_pred cCEEEEecc--------ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc----eEEEEEeCCCCcEEEE
Confidence 345666653 5899999998864444455554433333333 345777777 345677776544 36
Q ss_pred Eec
Q 014222 291 FPV 293 (428)
Q Consensus 291 ~~~ 293 (428)
+..
T Consensus 132 tVt 134 (136)
T PF14781_consen 132 TVT 134 (136)
T ss_pred Eec
Confidence 643
No 222
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=37.30 E-value=4e+02 Score=25.87 Aligned_cols=229 Identities=13% Similarity=0.035 Sum_probs=94.0
Q ss_pred cceEEEEeeCCCCceeEEEEeCCCCceEeCCCCCCCCccccccEEEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCcee
Q 014222 118 EEWIYVIKRDREGKISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWH 197 (428)
Q Consensus 118 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 197 (428)
++.-++|.++.++...++..|..+++-.+|...+.. ...+ ...+..+..+|.+- ....+...|..|.+=+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g-~~~s~~~~~~~Yv~-------~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFG-GFLSPDDRALYYVK-------NGRSLRRVDLDTLEER 115 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT--EE-TTSSEEEEEE-------TTTEEEEEETTT--EE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--Cccc-eEEecCCCeEEEEE-------CCCeEEEEECCcCcEE
Confidence 344455566667778899999999999999876542 1222 33334444665442 1247888999888766
Q ss_pred eCCCCCcCCcceeeEEEC--CEEEEEccccC--CC--------------CCCCCeEEEEeCCCCceEEcCCCCCCccceE
Q 014222 198 RAPDMLRRRHFFGSCVIN--NCLYVAGGENG--GV--------------HRSLRSAEVYDPNKNRWSFISDMSTAMVPFI 259 (428)
Q Consensus 198 ~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~--~~--------------~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~ 259 (428)
.+-..|..-.+.+..+.+ +..++ |-... .. ......+..-|..+.+.+.+-.-.. ..+|.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~ 193 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHV 193 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEE
T ss_pred EEEECCcccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCc
Confidence 665555444333333332 33322 11100 00 1123456666777776655432111 01111
Q ss_pred EEE-ECCEEEEE--ec-CCCCceeEEEEeCCCCCeEecCCCCcCCCCCc--eEEECCe-EEEEEccCC---cEEEEEeCC
Q 014222 260 GVV-YEGKWFLK--GL-GSHRQVLSEAYQPETDSWFPVYDGMVAGWRNP--SASLNRH-LYALDCKDG---CKIRVYDEV 329 (428)
Q Consensus 260 ~~~-~~g~lyv~--Gg-~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~--~~~~~~~-lyv~gG~~~---~~i~~yd~~ 329 (428)
-.. .+..+.++ -| -..-...|+..|........+...+. ..... --+.+|. |+..+...+ .-|..||++
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 111 23333333 22 11111236777766555555543221 11111 1123444 333332222 247788998
Q ss_pred CCceeeCcccccccCCcccccceEEEEeCCeEEEEeCC
Q 014222 330 TDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNN 367 (428)
Q Consensus 330 ~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 367 (428)
+..=+.+..+|. ..|-....+++|++--|.
T Consensus 273 t~~~~~~~~~p~--------~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 273 TGERRRLMEMPW--------CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp T--EEEEEEE-S--------EEEEEE-TTSSEEEEEE-
T ss_pred CCCceEEEeCCc--------eeeeEEcCCCCEEEecCC
Confidence 875333433331 246677788888876443
No 223
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=34.51 E-value=4.5e+02 Score=25.65 Aligned_cols=118 Identities=12% Similarity=0.055 Sum_probs=59.4
Q ss_pred EEEECCEEEEEecCCCCceeEEEEeCCCCCeEec-CCCCcCCCCCce-EEECCeEEEEEccCCcEEEEEeCCCCceeeCc
Q 014222 260 GVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPV-YDGMVAGWRNPS-ASLNRHLYALDCKDGCKIRVYDEVTDSWSKHI 337 (428)
Q Consensus 260 ~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~-~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~ 337 (428)
+.-.+|.+...||.+.. .-++|+.+..=..+ .....+. ..+ ..-||.....|+.++ .+.++|.....= +.
T Consensus 310 af~~DGSL~~tGGlD~~---~RvWDlRtgr~im~L~gH~k~I--~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~--ly 381 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSL---GRVWDLRTGRCIMFLAGHIKEI--LSVAFSPNGYHLATGSSDN-TCKVWDLRMRSE--LY 381 (459)
T ss_pred EecCCCceeeccCccch---hheeecccCcEEEEecccccce--eeEeECCCceEEeecCCCC-cEEEeeeccccc--ce
Confidence 44458999988884322 23677776653222 1111100 111 123777777777654 677777654432 33
Q ss_pred ccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCCCCCCccccccceeccCCcc
Q 014222 338 DSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNGERGASAEHLWETISGKGQF 399 (428)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~~~~~~~~~~W~~~~~~~~~ 399 (428)
.+|...... .....-...|+.++..+++... .+|.. ..|..++.|...
T Consensus 382 ~ipAH~nlV---S~Vk~~p~~g~fL~TasyD~t~--kiWs~---------~~~~~~ksLaGH 429 (459)
T KOG0272|consen 382 TIPAHSNLV---SQVKYSPQEGYFLVTASYDNTV--KIWST---------RTWSPLKSLAGH 429 (459)
T ss_pred ecccccchh---hheEecccCCeEEEEcccCcce--eeecC---------CCcccchhhcCC
Confidence 444322111 1112222357777777654433 34443 557777766543
No 224
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.26 E-value=3.3e+02 Score=24.02 Aligned_cols=97 Identities=13% Similarity=-0.026 Sum_probs=57.2
Q ss_pred EEEEECCEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeC
Q 014222 259 IGVVYEGKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKH 336 (428)
Q Consensus 259 ~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v 336 (428)
.....+|.||...|... ...+..+|..+.+ |++--+ ++....-+...+++.+|..-..++ .-+.||+.+ .+.+
T Consensus 50 GL~~~~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~eg-vaf~~d~~t--~~~l 124 (262)
T COG3823 50 GLEYLDGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEG-VAFKYDADT--LEEL 124 (262)
T ss_pred ceeeeCCEEEEeccccc-cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccc-eeEEEChHH--hhhh
Confidence 45567888888766332 2347889988554 654432 233333446788999999976543 567777764 3333
Q ss_pred cccccccCCcccccceEEEEeCCeEEEEeC
Q 014222 337 IDSKMHLGNSRALEAAALVPLNGKLCIIRN 366 (428)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 366 (428)
+..+-+ +.+.+++..+..|.+-.|
T Consensus 125 g~~~y~------GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 125 GRFSYE------GEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred cccccC------CcceeeecCCcceEeeCC
Confidence 332211 135666666666665555
No 225
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=33.65 E-value=4.8e+02 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEECCeEEEEEccCCcEEEEEeCCCCce
Q 014222 306 ASLNRHLYALDCKDGCKIRVYDEVTDSW 333 (428)
Q Consensus 306 ~~~~~~lyv~gG~~~~~i~~yd~~~~~W 333 (428)
+..+|.+.+.|+.++ .+.++|+..++-
T Consensus 285 is~DgtlLlSGd~dg-~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDG-KVCVWDIYSKQC 311 (476)
T ss_pred EecCccEEEeeCCCC-CEEEEecchHHH
Confidence 457999999998776 788888877653
No 226
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=33.34 E-value=3.6e+02 Score=24.26 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=91.9
Q ss_pred EEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeC----CCCceEEcCCCCCCccceEEE
Q 014222 186 VIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDP----NKNRWSFISDMSTAMVPFIGV 261 (428)
Q Consensus 186 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~----~t~~W~~~~~~p~~~~~~~~~ 261 (428)
+.......+.|.+-|... ++++|++.+.. ...+.-|.. ....|...-.+|.+..+..-+
T Consensus 12 ~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~------~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~V 74 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD------GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHV 74 (249)
T ss_pred EEeeccccceeecCCCcc-----------cCceEEecccc------CceEEEeccHHHhhccCcceEEeCCCCccccceE
Confidence 444555557777543211 67888884432 245555654 334566666778888888899
Q ss_pred EECCEEEEEecCCCCceeEEEEeCCCC---CeEecCCCCcC-----CC----CCceEEECCeEEEEEc---cCCcE-EEE
Q 014222 262 VYEGKWFLKGLGSHRQVLSEAYQPETD---SWFPVYDGMVA-----GW----RNPSASLNRHLYALDC---KDGCK-IRV 325 (428)
Q Consensus 262 ~~~g~lyv~Gg~~~~~~~i~~yd~~~~---~W~~~~~~~~~-----~~----~~~~~~~~~~lyv~gG---~~~~~-i~~ 325 (428)
+++|.+|.-... ...+.+||..+. .|..++...-. .. ..-.++-++-|+++-- ..+.- +-.
T Consensus 75 VynGs~yynk~~---t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 75 VYNGSLYYNKAG---TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred EEcceEEeeccC---CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 999999986532 234678998874 35554331111 00 1124566666777642 22222 366
Q ss_pred EeCCC----CceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEE-EE-EeecCCC
Q 014222 326 YDEVT----DSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSIS-LV-DVSKSNG 380 (428)
Q Consensus 326 yd~~~----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~-~v-~~yd~~~ 380 (428)
.|+.+ .+|..--. ... ...++.+=|-||++-...... .+ ..||..+
T Consensus 152 Ldp~tl~~e~tW~T~~~----k~~-----~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~ 203 (249)
T KOG3545|consen 152 LDPETLEVERTWNTTLP----KRS-----AGNAFMICGVLYVVHSYNCTHTQISYAYDTTT 203 (249)
T ss_pred cCHHHhheeeeeccccC----CCC-----cCceEEEeeeeEEEeccccCCceEEEEEEcCC
Confidence 77743 45643211 111 133444456788886644322 22 6899887
No 227
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=4e+02 Score=24.76 Aligned_cols=136 Identities=11% Similarity=0.114 Sum_probs=67.9
Q ss_pred CeEEEEeCCCCceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeE
Q 014222 233 RSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHL 312 (428)
Q Consensus 233 ~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l 312 (428)
+++..||..+.+-...-..+..-......+......+.+. +....++-..++.+|+.-..=+.-......-.+.-.+..
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sS-tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSS-TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEcc-CCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 5889999988865544333322222333334443333332 222345667778888766542100000000011124577
Q ss_pred EEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 313 YALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 313 yv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
|+.+..+ ..|..||.....=..+-.+. +++ .++.-..|-|+.++-... .|..||...
T Consensus 115 FlS~S~D-~tvrLWDlR~~~cqg~l~~~---~~p-----i~AfDp~GLifA~~~~~~--~IkLyD~Rs 171 (311)
T KOG1446|consen 115 FLSSSLD-KTVRLWDLRVKKCQGLLNLS---GRP-----IAAFDPEGLIFALANGSE--LIKLYDLRS 171 (311)
T ss_pred EEecccC-CeEEeeEecCCCCceEEecC---CCc-----ceeECCCCcEEEEecCCC--eEEEEEecc
Confidence 7777766 37888888865444332211 111 444555566666654433 345555443
No 228
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.57 E-value=3.9e+02 Score=24.40 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=90.9
Q ss_pred EEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCc--eeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEe
Q 014222 162 CAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNK--WHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYD 239 (428)
Q Consensus 162 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 239 (428)
.+++++.+-|++=|.. ...+...|+.++. |+.+ ...|...++.++++. .|+|-+. ..++..+
T Consensus 16 LVV~~dskT~v~igSH-----s~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~-------g~lYfl~ 79 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH-----SGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYS-------GGLYFLC 79 (354)
T ss_pred EEEecCCceEEEEecC-----CceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEcc-------CcEEEEE
Confidence 4566655555554432 3467788998885 8765 345777777788877 5556553 3455555
Q ss_pred CCC--CceEEcCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEE-ECCeEEE
Q 014222 240 PNK--NRWSFISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSAS-LNRHLYA 314 (428)
Q Consensus 240 ~~t--~~W~~~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~-~~~~lyv 314 (428)
..| .-|.....- .-...+.+..-.|.||+ |..+. ..+..|+.+.. |+.- -.......++.. .++.||+
T Consensus 80 ~~tGs~~w~f~~~~-~vk~~a~~d~~~glIyc-gshd~---~~yalD~~~~~cVyksk--cgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 80 VKTGSQIWNFVILE-TVKVRAQCDFDGGLIYC-GSHDG---NFYALDPKTYGCVYKSK--CGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred ecchhheeeeeehh-hhccceEEcCCCceEEE-ecCCC---cEEEecccccceEEecc--cCCceeccceecCCCceEEE
Confidence 555 467654321 11112223333455555 32222 35677776653 5421 111111222322 3566776
Q ss_pred EEccCCcEEEEEeCCCC----ceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 315 LDCKDGCKIRVYDEVTD----SWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 315 ~gG~~~~~i~~yd~~~~----~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.-- +..+..-++++. -|..--.-|.................+|.|..|.- .+ ..|+.|....
T Consensus 153 a~t--~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~-sG-~qvwr~~t~G 218 (354)
T KOG4649|consen 153 AIT--AGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDE-SG-RQVWRPATKG 218 (354)
T ss_pred Eec--cceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcC-CC-cEEEeecCCC
Confidence 531 113444444433 23322111211110111112233347788877752 22 4466555544
No 229
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.47 E-value=1.2e+02 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.0
Q ss_pred cEEEEEeCCCCceeeCcc
Q 014222 321 CKIRVYDEVTDSWSKHID 338 (428)
Q Consensus 321 ~~i~~yd~~~~~W~~v~~ 338 (428)
..+..|||.+++.+.+..
T Consensus 37 GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred cCEEEEECCCCeEEEehh
Confidence 369999999999987754
No 230
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=30.17 E-value=5.8e+02 Score=25.69 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=38.9
Q ss_pred EECCeEEEEEccCCcEEEEEeCCC-----CceeeCcccccccCCcccccceEEEEeCCeEEEEeCC----CeEEEEEeec
Q 014222 307 SLNRHLYALDCKDGCKIRVYDEVT-----DSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNN----MSISLVDVSK 377 (428)
Q Consensus 307 ~~~~~lyv~gG~~~~~i~~yd~~~-----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~----~~~~~v~~yd 377 (428)
..+|+..+.-|.++ .+.+||+.. +.|+.+...-. ..-+++..+++|++.|-. .....+..||
T Consensus 373 S~dg~~LlSRg~D~-tLKvWDLrq~kkpL~~~tgL~t~~~--------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDD-TLKVWDLRQFKKPLNVRTGLPTPFP--------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred ccccchhhhccCCC-ceeeeeccccccchhhhcCCCccCC--------CCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 34666666655553 566666543 45666654221 235677889999998752 1233577888
Q ss_pred CCC
Q 014222 378 SNG 380 (428)
Q Consensus 378 ~~~ 380 (428)
..+
T Consensus 444 ~~t 446 (641)
T KOG0772|consen 444 RMT 446 (641)
T ss_pred ccc
Confidence 655
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.41 E-value=5e+02 Score=24.34 Aligned_cols=147 Identities=14% Similarity=0.046 Sum_probs=78.9
Q ss_pred EEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCC------cCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCC
Q 014222 169 HLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDML------RRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNK 242 (428)
Q Consensus 169 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t 242 (428)
.+-++||.+...-..+.+.++|-...+-..-..+. .-|..+-++++.++|||.-=.+ ....+.++|...
T Consensus 60 ~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~-----n~k~l~~~et~~ 134 (346)
T KOG2111|consen 60 YLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD-----NPKLLHVIETRS 134 (346)
T ss_pred eEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC-----Chhheeeeeccc
Confidence 56677776645557889999995544322211111 1244556777888888874321 234555565543
Q ss_pred CceEEcCCCCCCccceEEEE-ECCEEEEEecCCCCceeEEEEeCCCCCe---EecCCCCcCCCCCceEEECCeEEEEEcc
Q 014222 243 NRWSFISDMSTAMVPFIGVV-YEGKWFLKGLGSHRQVLSEAYQPETDSW---FPVYDGMVAGWRNPSASLNRHLYALDCK 318 (428)
Q Consensus 243 ~~W~~~~~~p~~~~~~~~~~-~~g~lyv~Gg~~~~~~~i~~yd~~~~~W---~~~~~~~~~~~~~~~~~~~~~lyv~gG~ 318 (428)
+ |.+ -++.+. .+..+.++-|...+ .+..-|....+- ..+..+. ....+-+....|.+...+..
T Consensus 135 N--------PkG--lC~~~~~~~k~~LafPg~k~G--qvQi~dL~~~~~~~p~~I~AH~-s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 135 N--------PKG--LCSLCPTSNKSLLAFPGFKTG--QVQIVDLASTKPNAPSIINAHD-SDIACVALNLQGTLVATAST 201 (346)
T ss_pred C--------CCc--eEeecCCCCceEEEcCCCccc--eEEEEEhhhcCcCCceEEEccc-CceeEEEEcCCccEEEEecc
Confidence 2 222 222222 24455666554433 355666554443 1121111 01111122357888888888
Q ss_pred CCcEEEEEeCCCCce
Q 014222 319 DGCKIRVYDEVTDSW 333 (428)
Q Consensus 319 ~~~~i~~yd~~~~~W 333 (428)
.|.-|.+||..+++-
T Consensus 202 kGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTL 216 (346)
T ss_pred CcEEEEEEEcCCCcE
Confidence 887899999988753
No 232
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.24 E-value=3.9e+02 Score=23.00 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=41.8
Q ss_pred CCceEEEEECCCCceeeCCCCCcC-Ccce-eeEEE-CCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCC
Q 014222 182 SMRRVIFYSARTNKWHRAPDMLRR-RHFF-GSCVI-NNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTA 254 (428)
Q Consensus 182 ~~~~v~~yd~~t~~W~~~~~~~~~-r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 254 (428)
....+|++|..++.|..+..-+.. ...+ -+.-+ +..|.++=|..-|.-..-..+++|++.++.-+.+-+....
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc
Confidence 567899999999888765211111 1111 12233 4445444443222212235799999999988888766543
No 233
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.69 E-value=1.6e+02 Score=18.27 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=22.6
Q ss_pred ceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 351 AAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
...+...++.+||..+..+...+++-||..
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvDISnPs~ 33 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVDISNPSN 33 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEECCCCCC
Confidence 356778899999997777766666666655
No 234
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=26.93 E-value=7e+02 Score=25.53 Aligned_cols=171 Identities=12% Similarity=0.161 Sum_probs=86.6
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccc-eEEEE
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVP-FIGVV 262 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~-~~~~~ 262 (428)
+.+.++|..++.-..+-.- .-...-.+.+++.+.|.|.++ ..+-+||+.+.+- +..+.. ... .....
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d-------~~v~VW~~~~~~c--l~sl~g-H~~~V~sl~ 378 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYD-------GTVKVWDPRTGKC--LKSLSG-HTGRVYSLI 378 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecC-------ceEEEEEhhhcee--eeeecC-CcceEEEEE
Confidence 4688888876654433110 111112344567777777764 4788999985543 222211 111 11224
Q ss_pred ECC-EEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCccccc
Q 014222 263 YEG-KWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKM 341 (428)
Q Consensus 263 ~~g-~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~ 341 (428)
+++ ...+-|+.+ .++..+|+.+.. ..+..............+.+.+++.+..++ .|.+||.++++=.++-.-+
T Consensus 379 ~~~~~~~~Sgs~D---~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~-~Ik~WD~~~~~~~~~~~~~- 452 (537)
T KOG0274|consen 379 VDSENRLLSGSLD---TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG-TIKLWDAEEGECLRTLEGR- 452 (537)
T ss_pred ecCcceEEeeeec---cceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccc-cEEEeecccCceeeeeccC-
Confidence 455 444444432 346777876664 111111111111112345677777777665 7889998887766554322
Q ss_pred ccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 342 HLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+. .+..+...+...++..+.... +..||..+
T Consensus 453 ~~------~~v~~l~~~~~~il~s~~~~~--~~l~dl~~ 483 (537)
T KOG0274|consen 453 HV------GGVSALALGKEEILCSSDDGS--VKLWDLRS 483 (537)
T ss_pred Cc------ccEEEeecCcceEEEEecCCe--eEEEeccc
Confidence 11 123334444466666665443 44556655
No 235
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=26.68 E-value=4.8e+02 Score=23.54 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=79.7
Q ss_pred cceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCC-CceEEcCCC----CCC------c-cceEEEEECCEEEEEec--
Q 014222 207 HFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNK-NRWSFISDM----STA------M-VPFIGVVYEGKWFLKGL-- 272 (428)
Q Consensus 207 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t-~~W~~~~~~----p~~------~-~~~~~~~~~g~lyv~Gg-- 272 (428)
....++..++..|+++..... ...+.++-+.. ..|+..... +.. . ....+...+|+.|++-.
T Consensus 11 ~DP~i~~~~~~yY~~~t~~~~----~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~~~ 86 (286)
T PF04616_consen 11 ADPSIVRFGDGYYLYGTTDPE----GPGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYSDS 86 (286)
T ss_dssp CSEEEEEETTEEEEEEEEBTC----ESBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEECCEEEEEEEcCCC----CCeEEEEECCCCcccccceeeecccccccccccccccCCeEEEcCCeEEEEEEcc
Confidence 455677788999998876421 14566664432 358765411 111 1 23445667999887743
Q ss_pred --CCCCceeEEEEeCCCCCeEecCCCC--cCCCCCce-EEEC-CeEEEEEccCC-----cEEE--EEeCCCCceeeCccc
Q 014222 273 --GSHRQVLSEAYQPETDSWFPVYDGM--VAGWRNPS-ASLN-RHLYALDCKDG-----CKIR--VYDEVTDSWSKHIDS 339 (428)
Q Consensus 273 --~~~~~~~i~~yd~~~~~W~~~~~~~--~~~~~~~~-~~~~-~~lyv~gG~~~-----~~i~--~yd~~~~~W~~v~~~ 339 (428)
.......+..=|--.+.|+...... .....-+. ...+ |+.|++-+... ..|+ ..+.....+..-...
T Consensus 87 ~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~ 166 (286)
T PF04616_consen 87 GGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLTGEPVV 166 (286)
T ss_dssp STSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEEEEECE
T ss_pred CCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCccccccCcccc
Confidence 1111222333333447898875532 12222233 3445 89998865432 2344 445554444433211
Q ss_pred cc-c---cCCcccccceEEEEeCCeEEEE
Q 014222 340 KM-H---LGNSRALEAAALVPLNGKLCII 364 (428)
Q Consensus 340 ~~-~---~~~~~~~~~~~~~~~~~~lyv~ 364 (428)
.. . ........+..++..+|+.|++
T Consensus 167 ~~~~~~~~~~~~~~Egp~~~k~~g~yYl~ 195 (286)
T PF04616_consen 167 VIFPGDEGWDGGVVEGPFVFKHGGKYYLF 195 (286)
T ss_dssp EEEEESGSSTTTBEEEEEEEEETTEEEEE
T ss_pred cccccccccCCccccceEEEEcCCCEEEE
Confidence 11 1 1112223678899999999987
No 236
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.95 E-value=5.4e+02 Score=23.94 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=49.8
Q ss_pred CCEEEEEccccCCCCCCCCeEE---EEeCCCCceEEcCCCCCCccceEEEEE------CC-EEEEEecCCCCceeEEEEe
Q 014222 215 NNCLYVAGGENGGVHRSLRSAE---VYDPNKNRWSFISDMSTAMVPFIGVVY------EG-KWFLKGLGSHRQVLSEAYQ 284 (428)
Q Consensus 215 ~~~iyv~GG~~~~~~~~~~~v~---~yd~~t~~W~~~~~~p~~~~~~~~~~~------~g-~lyv~Gg~~~~~~~i~~yd 284 (428)
+|..++.||.+ ..+. +|+-..|.|..- +|+.++. ++ .||-.|- ..++..||
T Consensus 58 ~gs~~aSgG~D-------r~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt----Dk~v~~wD 118 (338)
T KOG0265|consen 58 DGSCFASGGSD-------RAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT----DKTVRGWD 118 (338)
T ss_pred CCCeEeecCCc-------ceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC----CceEEEEe
Confidence 67778888875 2333 355566677543 3333333 33 3444442 23578999
Q ss_pred CCCCCeEecCCCCcCCCCCceEEE-CCeEEEEEccCCcEEEEEeCCCCc
Q 014222 285 PETDSWFPVYDGMVAGWRNPSASL-NRHLYALDCKDGCKIRVYDEVTDS 332 (428)
Q Consensus 285 ~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~gG~~~~~i~~yd~~~~~ 332 (428)
.++++=..--. .-.....++... -|--.+.-|.+...+..||..++.
T Consensus 119 ~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 119 AETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred cccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 98886322110 000111111111 233344445555689999988553
No 237
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=25.17 E-value=6.9e+02 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.530 Sum_probs=17.5
Q ss_pred CEEEEEccccCCCCCCCCeEEEEeCCCCc
Q 014222 216 NCLYVAGGENGGVHRSLRSAEVYDPNKNR 244 (428)
Q Consensus 216 ~~iyv~GG~~~~~~~~~~~v~~yd~~t~~ 244 (428)
.++|++||.+ ..+..||..+++
T Consensus 312 ~n~fl~G~sd-------~ki~~wDiRs~k 333 (503)
T KOG0282|consen 312 QNIFLVGGSD-------KKIRQWDIRSGK 333 (503)
T ss_pred CcEEEEecCC-------CcEEEEeccchH
Confidence 4899999975 577888887765
No 238
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=25.13 E-value=2.6e+02 Score=27.61 Aligned_cols=83 Identities=6% Similarity=-0.021 Sum_probs=50.0
Q ss_pred ECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeC-CeEEEEeCCCeEE---------EEEeec
Q 014222 308 LNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLN-GKLCIIRNNMSIS---------LVDVSK 377 (428)
Q Consensus 308 ~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~---------~v~~yd 377 (428)
-.+.=++..+++. .+..+|.++++=..--.+.... .+.-...+ .++|+.||.++.- .+..||
T Consensus 268 ~~g~~fLS~sfD~-~lKlwDtETG~~~~~f~~~~~~-------~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 268 NCGTSFLSASFDR-FLKLWDTETGQVLSRFHLDKVP-------TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred ccCCeeeeeecce-eeeeeccccceEEEEEecCCCc-------eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 3556666666664 6788899988655432221111 12222333 4899999965421 223466
Q ss_pred CCCCCCCccccccceeccCCccccchhh
Q 014222 378 SNGERGASAEHLWETISGKGQFKTLVTN 405 (428)
Q Consensus 378 ~~~~~~~~~~~~W~~~~~~~~~~~f~~~ 405 (428)
-.. ..|..+.=.+..+.|++.
T Consensus 340 ~hL-------g~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 340 RHL-------GAILDITFVDEGRRFISS 360 (503)
T ss_pred hhh-------hheeeeEEccCCceEeee
Confidence 666 778888888888888773
No 239
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=5.6e+02 Score=23.83 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=48.2
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccEEEE-EeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFGCAV-LSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
.++..||...++-...-... .++...+. .......+.+-. . ...++-..+..+|+.-+.=+-...+...-
T Consensus 36 Dsl~LYd~~~g~~~~ti~sk-----kyG~~~~~Fth~~~~~i~sSt-k---~d~tIryLsl~dNkylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSK-----KYGVDLACFTHHSNTVIHSST-K---EDDTIRYLSLHDNKYLRYFPGHKKRVNSL 106 (311)
T ss_pred CeEEEEEcCCCceeeEeecc-----cccccEEEEecCCceEEEccC-C---CCCceEEEEeecCceEEEcCCCCceEEEE
Confidence 47889999888754332222 11211111 111122333221 1 22467777888887665432222222222
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCc
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNR 244 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~ 244 (428)
.+.-.+..|+.++.+ +++..+|..+.+
T Consensus 107 ~~sP~~d~FlS~S~D-------~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 107 SVSPKDDTFLSSSLD-------KTVRLWDLRVKK 133 (311)
T ss_pred EecCCCCeEEecccC-------CeEEeeEecCCC
Confidence 222234677777765 577888887554
No 240
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.92 E-value=3.7e+02 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=21.2
Q ss_pred EECCeEEEEEccCCcEEEEEeCCCCceee
Q 014222 307 SLNRHLYALDCKDGCKIRVYDEVTDSWSK 335 (428)
Q Consensus 307 ~~~~~lyv~gG~~~~~i~~yd~~~~~W~~ 335 (428)
--+|.|||.- +++..|+.+||.+..--+
T Consensus 220 D~eG~L~Va~-~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 220 DTEGNLYVAT-FNGGTVQKVDPTTGKILL 247 (310)
T ss_pred ccCCcEEEEE-ecCcEEEEECCCCCcEEE
Confidence 4588999886 345689999999986543
No 241
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.84 E-value=5.9e+02 Score=23.93 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred eCCCCceEEcC--CCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeE---E
Q 014222 239 DPNKNRWSFIS--DMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHL---Y 313 (428)
Q Consensus 239 d~~t~~W~~~~--~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l---y 313 (428)
+....+|+..+ ..+.--...+++++++...+.||.+. +|..||..++. ++...........++.+..-+ .
T Consensus 25 ~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDe---tI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 25 CTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDE---TIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred cccccceeeeccccccccccceeEEEecceeEeccCCCC---cEEEEeccchh--hhcceeccccceEEEEecCCcchhh
Q ss_pred EEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEE
Q 014222 314 ALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVD 374 (428)
Q Consensus 314 v~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~ 374 (428)
++.|.+...|.+++.. .|..+..+....+.. ..-.+...++|-+.=|.+..-..|
T Consensus 100 LlS~sdDG~i~iw~~~--~W~~~~slK~H~~~V----t~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVG--SWELLKSLKAHKGQV----TDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred eeeecCCCcEEEEEcC--CeEEeeeeccccccc----ceeEecCCCceEEEEcCCceeeee
No 242
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=24.20 E-value=1e+03 Score=26.51 Aligned_cols=155 Identities=16% Similarity=0.089 Sum_probs=78.4
Q ss_pred eEEEEeCCCCceEeCCCCCCCCccccccEEEEE----eCCE-EEEEeeeCCCC-----CCCceEEEEECCCC--ceeeCC
Q 014222 133 SWHAFDPIYQLWQPLPPIPKEYSEALGFGCAVL----SGCH-LYLFGGKDPLK-----GSMRRVIFYSARTN--KWHRAP 200 (428)
Q Consensus 133 ~~~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~----~~~~-lyv~GG~~~~~-----~~~~~v~~yd~~t~--~W~~~~ 200 (428)
++.++|+.+++-..+-+++.. ...+++++. .+.. +..+|+..... .....++.|+...+ +-+-+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n---e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN---EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC---cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 577888887765544444332 122333221 1112 33344332111 12345777776443 222232
Q ss_pred CCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCC-CccceEEEEECCEEEEEecCCCCcee
Q 014222 201 DMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMST-AMVPFIGVVYEGKWFLKGLGSHRQVL 279 (428)
Q Consensus 201 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~g~lyv~Gg~~~~~~~ 279 (428)
....+---++.+-.+|.+++ |.. +.+.+||...++--....... +-.-........+|+| |+......
T Consensus 931 ~T~~~~~v~Ai~~f~~~~La--gvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~V--gD~qeSV~ 999 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLA--GVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVV--GDIQESVH 999 (1205)
T ss_pred ccCCCccceEEeccCCEEEE--ecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEE--eeccceEE
Confidence 22222223345555664444 432 578899998776433332222 2222334445667777 33444555
Q ss_pred EEEEeCCCCCeEecCCCCcCCC
Q 014222 280 SEAYQPETDSWFPVYDGMVAGW 301 (428)
Q Consensus 280 i~~yd~~~~~W~~~~~~~~~~~ 301 (428)
..+|+++.++.-.....+.+++
T Consensus 1000 ~~~y~~~~n~l~~fadD~~pR~ 1021 (1205)
T KOG1898|consen 1000 FVRYRREDNQLIVFADDPVPRH 1021 (1205)
T ss_pred EEEEecCCCeEEEEeCCCccce
Confidence 7889999999888877555544
No 243
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.99 E-value=3.7e+02 Score=27.31 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=47.0
Q ss_pred EEEEeCCCCCeEecCC--C-CcCCCCCceEEECCeEEEEEccCCcEEEEEeCCCCceeeCcccccccCCcccccceEEEE
Q 014222 280 SEAYQPETDSWFPVYD--G-MVAGWRNPSASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVP 356 (428)
Q Consensus 280 i~~yd~~~~~W~~~~~--~-~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~ 356 (428)
.-.|+...++-+.++- . .+....+.+...+....++|..++ .|..||..++.=..+.. + ..+ .+..-.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-SiiLyD~~~~~t~~~ka-~-~~P------~~iaWH 308 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-SIILYDTTRGVTLLAKA-E-FIP------TLIAWH 308 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC-eEEEEEcCCCeeeeeee-c-ccc------eEEEEc
Confidence 3457766665544421 1 111111111234567788888776 89999988774332211 1 000 123334
Q ss_pred eCCeEEEEeCCCeEEEEEeecCCC
Q 014222 357 LNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 357 ~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.+|.++++|+..+ .+.+||...
T Consensus 309 p~gai~~V~s~qG--elQ~FD~AL 330 (545)
T PF11768_consen 309 PDGAIFVVGSEQG--ELQCFDMAL 330 (545)
T ss_pred CCCcEEEEEcCCc--eEEEEEeec
Confidence 4778888887533 355666554
No 244
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=22.89 E-value=6e+02 Score=23.34 Aligned_cols=160 Identities=9% Similarity=0.084 Sum_probs=82.9
Q ss_pred CEEEEEccccCCCCCCCCeEEEEeCC-CCceEEcCCCCC--CccceEEEE-ECCEEEEEecCCCCceeEEEEeCCCCCeE
Q 014222 216 NCLYVAGGENGGVHRSLRSAEVYDPN-KNRWSFISDMST--AMVPFIGVV-YEGKWFLKGLGSHRQVLSEAYQPETDSWF 291 (428)
Q Consensus 216 ~~iyv~GG~~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~--~~~~~~~~~-~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~ 291 (428)
|.|+..+|.+ +.+-.++.. .++|.-..-+.. .|.--.++- -.|++.+.|.... ++-.|.-..+.|.
T Consensus 27 g~ilAscg~D-------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~---t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 27 GVILASCGTD-------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA---TVVIWKKEDGEFE 96 (312)
T ss_pred ceEEEeecCC-------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc---eEEEeecCCCcee
Confidence 4577777764 678888887 788876644322 222222222 2566333342211 2334545566676
Q ss_pred ecCCCCcCCCCCceEE--ECCeEEEEEccCCcEEEEEeCC-CCceeeCcccccccCCcccccceEEEEeCC--eEEEEeC
Q 014222 292 PVYDGMVAGWRNPSAS--LNRHLYALDCKDGCKIRVYDEV-TDSWSKHIDSKMHLGNSRALEAAALVPLNG--KLCIIRN 366 (428)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~~lyv~gG~~~~~i~~yd~~-~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~--~lyv~GG 366 (428)
.++..-......-+++ .+|.+......+ .++|++... .++.+-++-+....-. ...+.... .|++-++
T Consensus 97 cv~~lEGHEnEVK~Vaws~sG~~LATCSRD-KSVWiWe~deddEfec~aVL~~HtqD------VK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSASGNYLATCSRD-KSVWIWEIDEDDEFECIAVLQEHTQD------VKHVIWHPTEDLLFSCS 169 (312)
T ss_pred EEeeeeccccceeEEEEcCCCCEEEEeeCC-CeEEEEEecCCCcEEEEeeecccccc------ccEEEEcCCcceeEEec
Confidence 6654222111122333 345555544433 578887654 4566666555433311 22333332 4555556
Q ss_pred CCeEEEEEeecCC-CCCCCccccccceeccCCcccc
Q 014222 367 NMSISLVDVSKSN-GERGASAEHLWETISGKGQFKT 401 (428)
Q Consensus 367 ~~~~~~v~~yd~~-~~~~~~~~~~W~~~~~~~~~~~ 401 (428)
++.+- .+|+-. . +.|+.+..+....+
T Consensus 170 YDnTI--k~~~~~~d-------ddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 170 YDNTI--KVYRDEDD-------DDWECVQTLDGHEN 196 (312)
T ss_pred cCCeE--EEEeecCC-------CCeeEEEEecCccc
Confidence 55544 444443 6 88999888877654
No 245
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=22.50 E-value=6.5e+02 Score=23.60 Aligned_cols=179 Identities=15% Similarity=0.200 Sum_probs=78.9
Q ss_pred EEEEEeCCEEEEEeeeC-C---CCCCCceEEEEEC-CCCceeeCCCC--------CcCCcceeeEEECCEEEEEccccCC
Q 014222 161 GCAVLSGCHLYLFGGKD-P---LKGSMRRVIFYSA-RTNKWHRAPDM--------LRRRHFFGSCVINNCLYVAGGENGG 227 (428)
Q Consensus 161 ~~~~~~~~~lyv~GG~~-~---~~~~~~~v~~yd~-~t~~W~~~~~~--------~~~r~~~~~~~~~~~iyv~GG~~~~ 227 (428)
+++..+| .|+++.... . .......+..|.. ...+|+..... ......++.++-+++||++-|....
T Consensus 3 SLV~vgG-vv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 3 SLVEVGG-VVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEETT-EEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CEEEECC-EEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 4566677 788776432 1 1112222334443 34468764211 1112345677789999999765432
Q ss_pred C-CCCCCeEEEEe--CCCCceEEcCCCCCCcc---------ceEEEEE-CCEEEE--EecC-CCC-ceeEEEEeCC-CCC
Q 014222 228 V-HRSLRSAEVYD--PNKNRWSFISDMSTAMV---------PFIGVVY-EGKWFL--KGLG-SHR-QVLSEAYQPE-TDS 289 (428)
Q Consensus 228 ~-~~~~~~v~~yd--~~t~~W~~~~~~p~~~~---------~~~~~~~-~g~lyv--~Gg~-~~~-~~~i~~yd~~-~~~ 289 (428)
. ......+..+- ....+|.....++.... +-+.+.. ||.|.. .+-. ... ..++..|... ...
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~ 161 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKT 161 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccc
Confidence 1 11122344442 23336987665543211 1112222 444332 1222 222 2566778776 678
Q ss_pred eEecCCCCcCCCCCce-EEE-CCeEEEEEccCCcEEEEE--eCCCCceee-Ccccc
Q 014222 290 WFPVYDGMVAGWRNPS-ASL-NRHLYALDCKDGCKIRVY--DEVTDSWSK-HIDSK 340 (428)
Q Consensus 290 W~~~~~~~~~~~~~~~-~~~-~~~lyv~gG~~~~~i~~y--d~~~~~W~~-v~~~~ 340 (428)
|+.-..+.+..+..+. +.. +++|.++.-.+...-.+| .-...+|++ ++.++
T Consensus 162 W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 162 WKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp -EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTT
T ss_pred eEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccc
Confidence 9987665555655554 456 789988864433333445 344568998 55554
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=21.71 E-value=8.2e+02 Score=24.47 Aligned_cols=180 Identities=10% Similarity=0.073 Sum_probs=87.6
Q ss_pred CceEEEEECCCCceeeCCC----CCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccce
Q 014222 183 MRRVIFYSARTNKWHRAPD----MLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPF 258 (428)
Q Consensus 183 ~~~v~~yd~~t~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~ 258 (428)
..++|.|+..+.+=.++.+ ...||... +|+-.++.-.-.+......++++++.+..+=..+.-....-...
T Consensus 58 ~DdlWe~slk~g~~~ritS~lGVvnn~kf~p-----dGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr~fT~V 132 (668)
T COG4946 58 CDDLWEYSLKDGKPLRITSGLGVVNNPKFSP-----DGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGRRFTRV 132 (668)
T ss_pred chHHHHhhhccCCeeEEecccceeccccCCC-----CCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEecccccee
Confidence 3477888887776554432 12233322 22222221110011222357778887777666554332111122
Q ss_pred EEEEECCEEEEEecCCCCcee-EEEEeCCCCC--eEecCCCCcCCCCCceEEECCeEEEEEcc----------C---CcE
Q 014222 259 IGVVYEGKWFLKGLGSHRQVL-SEAYQPETDS--WFPVYDGMVAGWRNPSASLNRHLYALDCK----------D---GCK 322 (428)
Q Consensus 259 ~~~~~~g~lyv~Gg~~~~~~~-i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~----------~---~~~ 322 (428)
+...-+|.|.|..-..+.... -+.|-...+- ...+. -+. ....+..+.+.++|-. . ...
T Consensus 133 aG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln----lGp-athiv~~dg~ivigRntydLP~WK~YkGGtrGk 207 (668)
T COG4946 133 AGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN----LGP-ATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGK 207 (668)
T ss_pred eccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc----CCc-eeeEEEeCCEEEEccCcccCcccccccCCccce
Confidence 233347777776432222111 2333332222 22221 111 1123444446666521 1 135
Q ss_pred EEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 323 IRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 323 i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
+|+=.-..++.+++-.|+... .+-+..++++|.+.-.++...++.-|...
T Consensus 208 lWis~d~g~tFeK~vdl~~~v--------S~PmIV~~RvYFlsD~eG~GnlYSvdldG 257 (668)
T COG4946 208 LWISSDGGKTFEKFVDLDGNV--------SSPMIVGERVYFLSDHEGVGNLYSVDLDG 257 (668)
T ss_pred EEEEecCCcceeeeeecCCCc--------CCceEEcceEEEEecccCccceEEeccCC
Confidence 777666666888888776554 44567899999987655555555555555
No 247
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.52 E-value=3.3e+02 Score=28.16 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=39.0
Q ss_pred EeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeC--------CCCC-cCCcceeeEEEC--CEEEEEccccCCCCCCCC
Q 014222 165 LSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRA--------PDML-RRRHFFGSCVIN--NCLYVAGGENGGVHRSLR 233 (428)
Q Consensus 165 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--------~~~~-~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~ 233 (428)
..+..+++.||.+. .+++||..+..-+.+ .+++ .++...-+...+ +.++|.||.. +
T Consensus 127 ak~~~lvaSgGLD~------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-------k 193 (735)
T KOG0308|consen 127 AKNNELVASGGLDR------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-------K 193 (735)
T ss_pred ccCceeEEecCCCc------cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-------c
Confidence 34447999999764 567777665532222 2233 233322222233 4588888864 6
Q ss_pred eEEEEeCCCCc
Q 014222 234 SAEVYDPNKNR 244 (428)
Q Consensus 234 ~v~~yd~~t~~ 244 (428)
.+..||+.+.+
T Consensus 194 ~lr~wDprt~~ 204 (735)
T KOG0308|consen 194 DLRLWDPRTCK 204 (735)
T ss_pred ceEEecccccc
Confidence 78899998874
No 248
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.93 E-value=6.9e+02 Score=23.33 Aligned_cols=124 Identities=9% Similarity=0.062 Sum_probs=61.1
Q ss_pred ceEEEEECCCCceeeCCCCCcC-CcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccceEEEE
Q 014222 184 RRVIFYSARTNKWHRAPDMLRR-RHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVV 262 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~~~~~~ 262 (428)
.++-.+|..+++-..++.-..+ |..+-+--.+..+.+.|..+ +++..+|+....=-..-.||... .++-+
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-------KTlKfWD~R~~~pv~t~~LPeRv--Ya~Dv 164 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-------KTLKFWDTRSSNPVATLQLPERV--YAADV 164 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-------cceeecccCCCCeeeeeecccee--eehhc
Confidence 4678999999987776543322 22111111122345555554 45666676543211111333322 22333
Q ss_pred ECCEEEEEecCCCCceeEEEEeCCCCC--eEecCCCCcCCCCCceEEECCeEEEEEccCC
Q 014222 263 YEGKWFLKGLGSHRQVLSEAYQPETDS--WFPVYDGMVAGWRNPSASLNRHLYALDCKDG 320 (428)
Q Consensus 263 ~~g~lyv~Gg~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~ 320 (428)
....+.|.-+ ...+.+|+++... ...+.++..-..++-++..++..|.+|+..|
T Consensus 165 ~~pm~vVata----~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 165 LYPMAVVATA----ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred cCceeEEEec----CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 3333333222 2236678876543 4444443222223334566888889998876
No 249
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=20.89 E-value=8.2e+02 Score=24.19 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCEEEEEecC-----------CCCceeEEEEeCCCCCeEe-----cCCCCcCCCCCceEEECCeEEEEEccCC-------
Q 014222 264 EGKWFLKGLG-----------SHRQVLSEAYQPETDSWFP-----VYDGMVAGWRNPSASLNRHLYALDCKDG------- 320 (428)
Q Consensus 264 ~g~lyv~Gg~-----------~~~~~~i~~yd~~~~~W~~-----~~~~~~~~~~~~~~~~~~~lyv~gG~~~------- 320 (428)
+|-+|+|... .....-+.+.+-.+..+-+ +...........+.-+++.-+++--...
T Consensus 285 nGDvYvfS~s~a~~~~~~~~~stkPSGilRIk~G~teFD~~Yffnle~~sgg~~~~~~~yIG~~kFll~~~~~~~~~~~~ 364 (435)
T PF14298_consen 285 NGDVYVFSPSYAKTMSDGKSQSTKPSGILRIKKGTTEFDKSYFFNLEAKSGGYKFFRVWYIGNNKFLLQMYDKALTGTYS 364 (435)
T ss_pred CCCEEEEcCcccccccccccccCCccEEEEECCCCcccCcceEeeeecccCCcceEEEEEecCCEEEEEEecccccccCC
Q ss_pred --cEEEEEeCCCCceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeE--EEEEeecCCC
Q 014222 321 --CKIRVYDEVTDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSI--SLVDVSKSNG 380 (428)
Q Consensus 321 --~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~--~~v~~yd~~~ 380 (428)
.++.++|..+++-+.+..+|...... .+.....-+++.||-=....- .-|+.+||.+
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~is~---~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~T 425 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLISG---FGNAPYVENGKAYIPVTTEDGSDPYIYKIDPAT 425 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhccc---cccceEeeCCEEEEEEeecCCCceeEEEEcCcc
No 250
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=20.83 E-value=7.7e+02 Score=23.95 Aligned_cols=79 Identities=16% Similarity=-0.004 Sum_probs=41.7
Q ss_pred EEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEE-ECCeEEEEEccCCcEEEEEeCCCCceeeCccc
Q 014222 261 VVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSAS-LNRHLYALDCKDGCKIRVYDEVTDSWSKHIDS 339 (428)
Q Consensus 261 ~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~ 339 (428)
..-+|+-.+|++.......++..|+++.+=+++...+........+. -+..||.+. ++..++..|+++.+=+.|-..
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~--~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK--NGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE--TTTEEEEEETTT--EEEEEE-
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE--CCCeEEEEECCcCcEEEEEEC
Confidence 34467667777665556668999999999999987554433333333 345565554 234789999998876666555
Q ss_pred cc
Q 014222 340 KM 341 (428)
Q Consensus 340 ~~ 341 (428)
|.
T Consensus 121 p~ 122 (386)
T PF14583_consen 121 PD 122 (386)
T ss_dssp -T
T ss_pred Cc
Confidence 43
No 251
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=20.71 E-value=6.4e+02 Score=22.88 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=96.3
Q ss_pred eeEEEEeCCCCceEeCCCCCCCCccccccE-EEEEeCCEEEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCccee
Q 014222 132 ISWHAFDPIYQLWQPLPPIPKEYSEALGFG-CAVLSGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFG 210 (428)
Q Consensus 132 ~~~~~yd~~~~~W~~l~~~~~~~~~r~~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 210 (428)
..+..||..++.=..+.....+ ..... +..-.+++.-..||.++ .+-++|...-.-.+.-..+.+.. .
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h---~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~qR~~~~~spVn--~ 129 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGH---TKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSCQRNYQHNSPVN--T 129 (311)
T ss_pred CeeEEEEccCCCCCceeEEecc---CCceEEEEEeecCeEEEecCCCc------eEEEEeccCcccchhccCCCCcc--e
Confidence 3688899988763222222211 11112 22222225555666553 35566665533333222222222 1
Q ss_pred eEEECCEEEEEccccCCCCCCCCeEEEEeCCCCceEEcCCCCCCccc-eEEEE-ECCEEEEEecCCCCceeEEEEeCCCC
Q 014222 211 SCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNRWSFISDMSTAMVP-FIGVV-YEGKWFLKGLGSHRQVLSEAYQPETD 288 (428)
Q Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~~~~-~~~~~-~~g~lyv~Gg~~~~~~~i~~yd~~~~ 288 (428)
++..-+.--+|-|.. ...+.++|..++.-... .+|+.-.. .+.++ -+|++.+ +..+.+ .+++++.-..
T Consensus 130 vvlhpnQteLis~dq------sg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~-a~nnkG--~cyvW~l~~~ 199 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQ------SGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLA-AANNKG--NCYVWRLLNH 199 (311)
T ss_pred EEecCCcceEEeecC------CCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEE-EecCCc--cEEEEEccCC
Confidence 222223222333322 35789999999865432 22322222 22222 3666444 333222 3567776554
Q ss_pred Ce-EecCCC--CcCCCCCc-eEEE--CCeEEEEEccCCcEEEEEeCCCCceeeCc-ccccccCCcccccceEEEEeCCeE
Q 014222 289 SW-FPVYDG--MVAGWRNP-SASL--NRHLYALDCKDGCKIRVYDEVTDSWSKHI-DSKMHLGNSRALEAAALVPLNGKL 361 (428)
Q Consensus 289 ~W-~~~~~~--~~~~~~~~-~~~~--~~~lyv~gG~~~~~i~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~~l 361 (428)
+- +.+.+. ......+. -|.+ +++..+..+.+ ..+.+|+.++. -+.. .+..... +.=-+++..++.-
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd-ktv~iwn~~~~--~kle~~l~gh~r----WvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD-KTVKIWNTDDF--FKLELVLTGHQR----WVWDCAFSADGEY 272 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEEeecCC-ceEEEEecCCc--eeeEEEeecCCc----eEEeeeeccCccE
Confidence 32 122110 11111222 2332 45554444443 57888888876 1111 1111111 1113455556666
Q ss_pred EEEeCCCeEEEEEeecCCC
Q 014222 362 CIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 362 yv~GG~~~~~~v~~yd~~~ 380 (428)
++.|+.+ ..+..+|+.+
T Consensus 273 lvTassd--~~~rlW~~~~ 289 (311)
T KOG0315|consen 273 LVTASSD--HTARLWDLSA 289 (311)
T ss_pred EEecCCC--Cceeeccccc
Confidence 6666654 3345666666
No 252
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=1.1e+03 Score=25.69 Aligned_cols=130 Identities=19% Similarity=0.171 Sum_probs=65.6
Q ss_pred EEEEeeeCCCCCCCceEEEEECCCCceeeCCCCCcCCcceeeEEECC--EEEEEccccCCCCCCCCeEEEEeCCCCceEE
Q 014222 170 LYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINN--CLYVAGGENGGVHRSLRSAEVYDPNKNRWSF 247 (428)
Q Consensus 170 lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~v~~yd~~t~~W~~ 247 (428)
++|-||-+ ..-.+|+++ .|+.|..-. +...-...+++.+.. .+.+.-|.+ .++-+||....+=-.
T Consensus 220 liVSG~DD----RqVKlWrmn-etKaWEvDt-crgH~nnVssvlfhp~q~lIlSnsED-------ksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 220 LIVSGADD----RQVKLWRMN-ETKAWEVDT-CRGHYNNVSSVLFHPHQDLILSNSED-------KSIRVWDMTKRTSVQ 286 (1202)
T ss_pred eEEecCCc----ceeeEEEec-cccceeehh-hhcccCCcceEEecCccceeEecCCC-------ccEEEEeccccccee
Confidence 45555433 344677777 577787421 111111223444443 456655543 577888887654211
Q ss_pred cCCCCCCccceEEEEECCEEEEEecCCCCceeEEEEeCCCCCeEecCCCCcCCCCCceEEECCeEEEEEccCCcEEEEEe
Q 014222 248 ISDMSTAMVPFIGVVYEGKWFLKGLGSHRQVLSEAYQPETDSWFPVYDGMVAGWRNPSASLNRHLYALDCKDGCKIRVYD 327 (428)
Q Consensus 248 ~~~~p~~~~~~~~~~~~g~lyv~Gg~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~i~~yd 327 (428)
.----..|+...++--+..+|..|.+++ +.+|-.+ +...+.++.+|.||.+- ...|..||
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsG----m~VFkle-------------RErpa~~v~~n~LfYvk---d~~i~~~d 346 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSG----MIVFKLE-------------RERPAYAVNGNGLFYVK---DRFIRSYD 346 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCc----eEEEEEc-------------ccCceEEEcCCEEEEEc---cceEEeee
Confidence 1111223444444444556666664332 2334221 11123567777777765 34688888
Q ss_pred CCCCc
Q 014222 328 EVTDS 332 (428)
Q Consensus 328 ~~~~~ 332 (428)
..+..
T Consensus 347 ~~t~~ 351 (1202)
T KOG0292|consen 347 LRTQK 351 (1202)
T ss_pred ccccc
Confidence 87744
No 253
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.29 E-value=7.2e+02 Score=23.26 Aligned_cols=175 Identities=16% Similarity=0.092 Sum_probs=85.8
Q ss_pred ceEEEEECCCCceeeCCCCCcCCcceeeEEECCEEEEEccccCCCCCCCCeEEEEeCCCCc-eEEcC----CCCCCccce
Q 014222 184 RRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENGGVHRSLRSAEVYDPNKNR-WSFIS----DMSTAMVPF 258 (428)
Q Consensus 184 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~t~~-W~~~~----~~p~~~~~~ 258 (428)
..++.||+.++.=+... +|.........-.++.|.+.. ..+..+|+++.. |+.+. ..+..|.+-
T Consensus 47 ~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~----------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 47 GRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE----------HGVRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred CeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc----------cccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 46888888766433221 111112212222234455442 234455554332 24443 233455556
Q ss_pred EEEEECCEEEEEecC------C--CCceeEEEEeCCCCCeEecCCCCcCCCCCceE-EECC-eEEEEEccCCcEEEEEeC
Q 014222 259 IGVVYEGKWFLKGLG------S--HRQVLSEAYQPETDSWFPVYDGMVAGWRNPSA-SLNR-HLYALDCKDGCKIRVYDE 328 (428)
Q Consensus 259 ~~~~~~g~lyv~Gg~------~--~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~-~lyv~gG~~~~~i~~yd~ 328 (428)
..+.-+|.+|+-.-. . ...-.+|.||+ ....+++.... .....+.+ .-++ .+|+..-. .+.|++|+.
T Consensus 116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~-~~~i~r~~~ 192 (307)
T COG3386 116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTP-ANRIHRYDL 192 (307)
T ss_pred eeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECCCCCEEEEEeCC-CCeEEEEec
Confidence 666678888875322 1 11225899999 45555554321 11122333 3344 67777633 257888876
Q ss_pred CC--------CceeeCcccccccCCcccccceEEEEeCCeEEEEeCCCeEEEEEeecCCC
Q 014222 329 VT--------DSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKSNG 380 (428)
Q Consensus 329 ~~--------~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~~ 380 (428)
.. +.+.... ...+.+ -..++--+|.||+.... .-..|.+|+|+.
T Consensus 193 d~~~g~~~~~~~~~~~~---~~~G~P----DG~~vDadG~lw~~a~~-~g~~v~~~~pdG 244 (307)
T COG3386 193 DPATGPIGGRRGFVDFD---EEPGLP----DGMAVDADGNLWVAAVW-GGGRVVRFNPDG 244 (307)
T ss_pred CcccCccCCcceEEEcc---CCCCCC----CceEEeCCCCEEEeccc-CCceEEEECCCC
Confidence 53 1111111 111111 24456668889974332 224588999876
No 254
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.19 E-value=2e+02 Score=16.90 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=7.7
Q ss_pred CeEEEEEccCCcEEEEEeC
Q 014222 310 RHLYALDCKDGCKIRVYDE 328 (428)
Q Consensus 310 ~~lyv~gG~~~~~i~~yd~ 328 (428)
+.||.+.-.++..+|.|+.
T Consensus 10 g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp SEEEEEETTTTSEEEEEES
T ss_pred CEEEEEECCCCCEEEeeeC
Confidence 3444444333334444443
No 255
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=20.02 E-value=2.8e+02 Score=26.02 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=28.3
Q ss_pred EEECCeEEEEEccCCcEEEEEeCCCCceeeCcccc
Q 014222 306 ASLNRHLYALDCKDGCKIRVYDEVTDSWSKHIDSK 340 (428)
Q Consensus 306 ~~~~~~lyv~gG~~~~~i~~yd~~~~~W~~v~~~~ 340 (428)
--.+|+||+..-..+ .+..+|+++.+.+.+...|
T Consensus 209 RWhdgrLwvldsgtG-ev~~vD~~~G~~e~Va~vp 242 (335)
T TIGR03032 209 RWYQGKLWLLNSGRG-ELGYVDPQAGKFQPVAFLP 242 (335)
T ss_pred cEeCCeEEEEECCCC-EEEEEcCCCCcEEEEEECC
Confidence 357899999985554 8999999999999998766
Done!