BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>014223
MPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWD
ARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTL
TTVPSLTDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLT
FRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGD
ASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHP
SGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVE
SLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDP
NAVRREDR

High Scoring Gene Products

Symbol, full name Information P value
AT5G39590 protein from Arabidopsis thaliana 2.0e-143
Y39A3CL.4 gene from Caenorhabditis elegans 0.00076

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  014223
        (428 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2164875 - symbol:AT5G39590 "AT5G39590" species...  1402  2.0e-143  1
WB|WBGene00021442 - symbol:Y39A3CL.4 species:6239 "Caenor...    97  0.00076   2


>TAIR|locus:2164875 [details] [associations]
            symbol:AT5G39590 "AT5G39590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000902 "cell morphogenesis"
            evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0048193
            "Golgi vesicle transport" evidence=RCA] EMBL:CP002688 EMBL:AB012243
            InterPro:IPR006571 Pfam:PF07534 SMART:SM00584 UniGene:At.21744
            UniGene:At.24451 IPI:IPI00523419 RefSeq:NP_198775.1
            ProteinModelPortal:Q9FKA3 STRING:Q9FKA3 PRIDE:Q9FKA3
            EnsemblPlants:AT5G39590.1 GeneID:833955 KEGG:ath:AT5G39590
            TAIR:At5g39590 HOGENOM:HOG000005654 InParanoid:Q9FKA3 OMA:SPEKMMM
            PhylomeDB:Q9FKA3 ProtClustDB:CLSN2687337 Genevestigator:Q9FKA3
            Uniprot:Q9FKA3
        Length = 542

 Score = 1402 (498.6 bits), Expect = 2.0e-143, P = 2.0e-143
 Identities = 253/430 (58%), Positives = 330/430 (76%)

Query:     1 MPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWD 60
             M  SM  NTLLRV+  T   AG + KLEFES +ADCKI+G +   ++L+  WMCWTM WD
Sbjct:   113 MSNSMSFNTLLRVYYVTAKNAGFSPKLEFESDEADCKINGSISVSELLVFLWMCWTMSWD 172

Query:    61 ARTRKFSKGKEEIFQPDVNHLVLSAVESC--AEVGSDVNFWDCNISDLEIQLPVGKFLTW 118
              R+ K ++ K  +F PD++HL+LSAV SC  +E G+ ++ W+ ++S LE++LP+GKFLTW
Sbjct:   173 GRSSKAAEMKGCLFLPDISHLILSAVVSCTDSESGNSLDVWETDVSGLELELPIGKFLTW 232

Query:   119 TLTTVPSLTDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTIS 178
              L TVP LT+C + F  +RLQ+  ++E+ S  S S+  D S++K  +  LL+ GRAW IS
Sbjct:   233 ALMTVPCLTECLSHFCNSRLQNVTSAEDGSGPSKSTAVDDSASKTSENTLLTCGRAWAIS 292

Query:   179 LTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANS 238
             LT +S+ISEE L  C P +  E  E+LLYRS  HG+G+NR WSN+EGYH P+L+++SA+ 
Sbjct:   293 LTSKSTISEEILSSCFPGNSGEPNEHLLYRSYYHGKGMNRLWSNVEGYHAPILVIISASC 352

Query:   239 GDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHL 298
                 +  +S RKW+IGA+ QQGFEN+D FYGSSGNL++ISP FH F  SGKEKNF YSHL
Sbjct:   353 KVEHEATSSERKWVIGAILQQGFENRDAFYGSSGNLFSISPVFHAFSSSGKEKNFAYSHL 412

Query:   299 HPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLP 358
             HP+G VY+ HPKPVGI FGGT+GNERIFIDEDFA++TVRHHAVD+TYQ GSL P+QG+LP
Sbjct:   413 HPAGGVYDAHPKPVGIGFGGTLGNERIFIDEDFAKITVRHHAVDKTYQSGSLFPNQGYLP 472

Query:   359 VESLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMS 418
             VE+L+L+IE WG+GG  A+++Q  Y+KREELFT QRRK+DLK F +WEDSPEKMMMDMM 
Sbjct:   473 VEALVLDIEAWGLGGNKAREIQQKYQKREELFTNQRRKIDLKTFTNWEDSPEKMMMDMMG 532

Query:   419 DPNAVRREDR 428
             +PNA R+E+R
Sbjct:   533 NPNAPRKEER 542


>WB|WBGene00021442 [details] [associations]
            symbol:Y39A3CL.4 species:6239 "Caenorhabditis elegans"
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            [GO:0008340 "determination of adult lifespan" evidence=IMP]
            GO:GO:0008340 GO:GO:0006974 InterPro:IPR006571 Pfam:PF07534
            SMART:SM00584 EMBL:FO081789 UniGene:Cel.6355 GeneID:175325
            KEGG:cel:CELE_Y39A3CL.4 CTD:175325 GeneTree:ENSGT00520000062145
            RefSeq:NP_497457.1 ProteinModelPortal:H2L0P9 PRIDE:H2L0P9
            EnsemblMetazoa:Y39A3CL.4b WormBase:Y39A3CL.4b Uniprot:H2L0P9
        Length = 411

 Score = 97 (39.2 bits), Expect = 0.00076, Sum P(2) = 0.00076
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query:   363 ILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDM 416
             IL+IEVWG  G      Q   K  ++  TE+ ++V L    +W+D+P+K +++M
Sbjct:   323 ILDIEVWGCAGAGTLADQQKLKNWQKQQTEKHKRVPLP--GNWDDNPDKTLLEM 374

 Score = 62 (26.9 bits), Expect = 0.00076, Sum P(2) = 0.00076
 Identities = 31/110 (28%), Positives = 45/110 (40%)

Query:   130 FTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSISEEF 189
             FTQ V  R+ S VT    ++I      D SS       +LSP + W +    +SS+   +
Sbjct:   161 FTQAVQNRVVSAVTD---TKIINP---DYSSD------ILSPLQMWYL----QSSLPAVY 204

Query:   190 LKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSG 239
                       E+    LY S  HG   NRF + +  Y GP + +     G
Sbjct:   205 FPAKPTETSGESHWTPLYTSLQHGISTNRFETLVFDYRGPTVTIFRMKDG 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      428       428   0.00085  118 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  298 KB (2153 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.87u 0.20s 34.07t   Elapsed:  00:00:01
  Total cpu time:  33.87u 0.20s 34.07t   Elapsed:  00:00:01
  Start:  Fri May 10 08:38:24 2013   End:  Fri May 10 08:38:25 2013

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