Query 014225
Match_columns 428
No_of_seqs 444 out of 3457
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 4.4E-24 9.5E-29 181.1 13.3 131 44-177 1-131 (131)
2 cd03009 TryX_like_TryX_NRX Try 99.9 4.6E-24 1E-28 181.0 13.1 130 208-345 1-131 (131)
3 cd03008 TryX_like_RdCVF Trypar 99.9 1.9E-23 4.2E-28 178.2 11.4 120 53-176 17-143 (146)
4 cd03008 TryX_like_RdCVF Trypar 99.9 1.7E-23 3.7E-28 178.6 10.9 123 218-342 17-141 (146)
5 cd02964 TryX_like_family Trypa 99.9 2.5E-22 5.4E-27 170.6 12.9 128 46-177 3-132 (132)
6 cd02964 TryX_like_family Trypa 99.9 2.4E-22 5.1E-27 170.7 12.6 128 209-345 2-132 (132)
7 PF08534 Redoxin: Redoxin; In 99.8 1.7E-20 3.6E-25 162.1 11.7 119 202-332 2-133 (146)
8 cd02969 PRX_like1 Peroxiredoxi 99.8 8.5E-20 1.8E-24 162.1 14.9 151 203-369 1-160 (171)
9 PRK15412 thiol:disulfide inter 99.8 8.7E-20 1.9E-24 163.9 12.8 117 201-332 40-161 (185)
10 PLN02399 phospholipid hydroper 99.8 8.4E-20 1.8E-24 168.1 12.3 138 200-362 73-235 (236)
11 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 6.1E-20 1.3E-24 153.8 10.1 116 202-329 1-124 (124)
12 KOG2501 Thioredoxin, nucleored 99.8 6.6E-20 1.4E-24 154.7 10.2 123 46-172 17-142 (157)
13 cd02967 mauD Methylamine utili 99.8 1.6E-19 3.4E-24 149.1 11.7 110 207-330 1-112 (114)
14 PTZ00056 glutathione peroxidas 99.8 1.6E-19 3.6E-24 163.6 12.1 138 201-363 14-180 (199)
15 KOG2501 Thioredoxin, nucleored 99.8 1.7E-19 3.7E-24 152.3 11.3 124 209-340 15-142 (157)
16 PLN02412 probable glutathione 99.8 1.5E-19 3.3E-24 159.5 11.2 134 204-362 7-165 (167)
17 PRK03147 thiol-disulfide oxido 99.8 4E-19 8.6E-24 157.9 13.8 121 201-332 36-157 (173)
18 cd03010 TlpA_like_DsbE TlpA-li 99.8 2.2E-19 4.7E-24 151.4 11.4 115 205-332 2-119 (127)
19 cd02967 mauD Methylamine utili 99.8 3E-19 6.6E-24 147.4 11.6 111 43-163 1-113 (114)
20 PF08534 Redoxin: Redoxin; In 99.8 2E-19 4.2E-24 155.4 10.6 118 38-163 2-132 (146)
21 PF13905 Thioredoxin_8: Thiore 99.8 4.3E-19 9.4E-24 141.6 11.4 93 226-326 1-95 (95)
22 PRK14018 trifunctional thiored 99.8 7.7E-19 1.7E-23 178.0 15.8 119 202-332 34-158 (521)
23 PRK00522 tpx lipid hydroperoxi 99.8 4E-19 8.7E-24 156.9 11.8 118 202-332 20-149 (167)
24 cd03012 TlpA_like_DipZ_like Tl 99.8 2.7E-19 6E-24 150.6 9.8 106 215-331 13-123 (126)
25 PF13905 Thioredoxin_8: Thiore 99.8 1.1E-18 2.4E-23 139.3 12.5 93 61-158 1-95 (95)
26 COG1225 Bcp Peroxiredoxin [Pos 99.8 1.2E-18 2.7E-23 148.6 12.6 118 201-330 5-136 (157)
27 TIGR00385 dsbE periplasmic pro 99.8 1E-18 2.2E-23 155.4 12.5 118 201-332 35-156 (173)
28 cd00340 GSH_Peroxidase Glutath 99.8 3.2E-19 6.9E-24 155.3 9.0 115 206-332 2-141 (152)
29 cd03015 PRX_Typ2cys Peroxiredo 99.8 1.2E-18 2.6E-23 154.9 12.8 119 202-331 1-137 (173)
30 PRK09437 bcp thioredoxin-depen 99.8 1.2E-18 2.5E-23 152.1 12.1 118 202-331 6-137 (154)
31 cd03014 PRX_Atyp2cys Peroxired 99.8 8.6E-19 1.9E-23 150.9 11.0 118 202-332 2-128 (143)
32 TIGR02661 MauD methylamine deh 99.8 3.4E-18 7.3E-23 154.1 14.5 114 201-330 47-163 (189)
33 cd03017 PRX_BCP Peroxiredoxin 99.8 1.8E-18 3.8E-23 148.2 11.4 116 205-332 2-128 (140)
34 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 1E-18 2.2E-23 146.3 9.4 115 38-160 1-123 (124)
35 PTZ00256 glutathione peroxidas 99.8 3.5E-18 7.6E-23 153.2 12.7 120 203-332 17-166 (183)
36 cd03018 PRX_AhpE_like Peroxire 99.8 5.2E-18 1.1E-22 146.9 12.5 119 202-332 3-132 (149)
37 TIGR02187 GlrX_arch Glutaredox 99.8 1.9E-17 4.1E-22 152.4 16.9 178 59-325 17-197 (215)
38 TIGR03137 AhpC peroxiredoxin. 99.8 3.8E-18 8.2E-23 153.5 11.7 121 201-331 3-136 (187)
39 cd03010 TlpA_like_DsbE TlpA-li 99.8 2.9E-18 6.3E-23 144.5 9.6 111 41-161 2-116 (127)
40 PRK10382 alkyl hydroperoxide r 99.8 6.3E-18 1.4E-22 151.2 12.0 121 201-332 3-137 (187)
41 cd00340 GSH_Peroxidase Glutath 99.8 1.6E-18 3.4E-23 150.8 7.5 115 42-162 2-139 (152)
42 TIGR02540 gpx7 putative glutat 99.8 5.2E-18 1.1E-22 147.8 10.5 116 207-332 3-138 (153)
43 PTZ00056 glutathione peroxidas 99.7 1.6E-17 3.4E-22 150.6 13.2 120 38-162 15-161 (199)
44 PRK15412 thiol:disulfide inter 99.7 5.6E-18 1.2E-22 152.2 9.6 116 36-162 39-159 (185)
45 cd03012 TlpA_like_DipZ_like Tl 99.7 6.9E-18 1.5E-22 142.1 9.4 105 51-162 13-122 (126)
46 PRK13599 putative peroxiredoxi 99.7 1.3E-17 2.8E-22 152.6 11.4 140 201-360 3-155 (215)
47 PLN02399 phospholipid hydroper 99.7 8.8E-18 1.9E-22 154.8 9.8 121 36-162 73-217 (236)
48 cd02966 TlpA_like_family TlpA- 99.7 2.2E-17 4.9E-22 135.2 11.2 112 208-330 1-114 (116)
49 PRK03147 thiol-disulfide oxido 99.7 2.3E-17 4.9E-22 146.6 11.8 118 37-161 36-154 (173)
50 TIGR02661 MauD methylamine deh 99.7 3.4E-17 7.4E-22 147.5 12.0 113 37-161 47-162 (189)
51 PRK14018 trifunctional thiored 99.7 2.4E-17 5.1E-22 167.2 11.9 117 37-161 33-155 (521)
52 PTZ00102 disulphide isomerase; 99.7 1.6E-16 3.5E-21 163.7 18.1 94 225-363 374-467 (477)
53 cd02969 PRX_like1 Peroxiredoxi 99.7 3.9E-17 8.4E-22 145.0 11.4 117 39-162 1-126 (171)
54 PRK13190 putative peroxiredoxi 99.7 3.4E-17 7.3E-22 148.9 11.3 139 202-361 4-154 (202)
55 cd02971 PRX_family Peroxiredox 99.7 4.7E-17 1E-21 139.3 11.4 118 205-333 1-129 (140)
56 PTZ00137 2-Cys peroxiredoxin; 99.7 5.5E-17 1.2E-21 151.4 12.4 121 201-331 69-205 (261)
57 PRK15000 peroxidase; Provision 99.7 4.8E-17 1E-21 147.5 11.7 139 201-359 3-160 (200)
58 PLN02412 probable glutathione 99.7 1.2E-17 2.7E-22 147.4 7.4 116 40-162 7-147 (167)
59 TIGR01626 ytfJ_HI0045 conserve 99.7 6.5E-17 1.4E-21 143.0 11.7 136 201-361 24-183 (184)
60 PRK13191 putative peroxiredoxi 99.7 9E-17 2E-21 147.1 11.9 140 201-360 8-160 (215)
61 cd03014 PRX_Atyp2cys Peroxired 99.7 4.4E-17 9.5E-22 140.2 9.3 117 38-163 2-127 (143)
62 PRK00522 tpx lipid hydroperoxi 99.7 5E-17 1.1E-21 143.5 9.8 117 38-163 20-148 (167)
63 cd02970 PRX_like2 Peroxiredoxi 99.7 1.1E-16 2.3E-21 138.5 11.5 114 205-330 1-146 (149)
64 TIGR00385 dsbE periplasmic pro 99.7 3.1E-17 6.8E-22 145.8 8.0 114 37-161 35-153 (173)
65 cd03016 PRX_1cys Peroxiredoxin 99.7 1.4E-16 3E-21 145.2 12.3 138 202-360 1-153 (203)
66 PTZ00253 tryparedoxin peroxida 99.7 1.6E-16 3.4E-21 144.5 12.3 120 201-331 7-144 (199)
67 cd02968 SCO SCO (an acronym fo 99.7 1.1E-16 2.4E-21 137.4 10.6 116 206-330 2-140 (142)
68 cd03017 PRX_BCP Peroxiredoxin 99.7 1.2E-16 2.6E-21 136.8 10.3 114 41-162 2-126 (140)
69 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.4E-16 3E-21 133.3 9.7 107 207-330 1-109 (123)
70 cd03018 PRX_AhpE_like Peroxire 99.7 2.1E-16 4.5E-21 136.9 11.0 120 38-163 3-131 (149)
71 PRK09437 bcp thioredoxin-depen 99.7 1.6E-16 3.4E-21 138.6 10.1 116 38-161 6-135 (154)
72 PLN02919 haloacid dehalogenase 99.7 2.9E-16 6.2E-21 174.0 14.3 119 202-331 393-520 (1057)
73 PTZ00256 glutathione peroxidas 99.7 9E-17 1.9E-21 144.1 8.4 119 39-162 17-164 (183)
74 cd02968 SCO SCO (an acronym fo 99.7 3.6E-16 7.7E-21 134.2 11.0 117 41-161 1-139 (142)
75 cd03015 PRX_Typ2cys Peroxiredo 99.7 3E-16 6.4E-21 139.6 10.1 116 38-163 1-137 (173)
76 TIGR02540 gpx7 putative glutat 99.7 1.5E-16 3.4E-21 138.5 7.9 115 43-162 3-136 (153)
77 PRK13189 peroxiredoxin; Provis 99.7 7.7E-16 1.7E-20 141.8 12.3 120 201-331 10-143 (222)
78 cd02966 TlpA_like_family TlpA- 99.7 7.4E-16 1.6E-20 126.1 10.9 111 44-161 1-113 (116)
79 KOG0191 Thioredoxin/protein di 99.7 2.5E-15 5.4E-20 150.3 16.7 244 60-401 46-309 (383)
80 TIGR03137 AhpC peroxiredoxin. 99.7 4.2E-16 9E-21 140.2 9.8 116 37-162 3-135 (187)
81 cd02971 PRX_family Peroxiredox 99.6 1.1E-15 2.4E-20 130.7 11.1 116 41-164 1-128 (140)
82 PRK13728 conjugal transfer pro 99.6 1.8E-15 3.8E-20 133.0 11.9 96 204-328 53-151 (181)
83 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 8.1E-16 1.8E-20 128.6 9.1 104 43-160 1-107 (123)
84 cd02970 PRX_like2 Peroxiredoxi 99.6 1.6E-15 3.5E-20 131.0 10.3 114 41-162 1-146 (149)
85 COG1225 Bcp Peroxiredoxin [Pos 99.6 3E-15 6.5E-20 127.9 10.3 118 37-162 5-136 (157)
86 PRK13599 putative peroxiredoxi 99.6 2.4E-15 5.3E-20 137.6 9.6 119 37-162 3-135 (215)
87 PRK10606 btuE putative glutath 99.6 3.8E-15 8.3E-20 132.5 10.4 82 205-298 4-94 (183)
88 cd02950 TxlA TRX-like protein 99.6 1.1E-14 2.3E-19 125.0 12.2 98 224-366 18-115 (142)
89 PRK13728 conjugal transfer pro 99.6 4.7E-15 1E-19 130.3 10.2 101 39-164 52-155 (181)
90 PLN02919 haloacid dehalogenase 99.6 2.9E-15 6.2E-20 166.1 11.0 118 37-161 392-518 (1057)
91 PRK13190 putative peroxiredoxi 99.6 4E-15 8.6E-20 135.4 9.8 117 37-161 3-132 (202)
92 PRK10382 alkyl hydroperoxide r 99.6 7.5E-15 1.6E-19 131.4 10.2 120 36-163 2-136 (187)
93 KOG0190 Protein disulfide isom 99.6 6.4E-14 1.4E-18 139.7 15.1 78 49-150 30-107 (493)
94 cd02985 TRX_CDSP32 TRX family, 99.6 3.4E-14 7.3E-19 115.1 10.7 77 223-331 12-88 (103)
95 PTZ00137 2-Cys peroxiredoxin; 99.5 2.3E-14 5E-19 133.9 10.7 121 36-163 68-205 (261)
96 PRK15000 peroxidase; Provision 99.5 1.5E-14 3.2E-19 131.2 8.7 120 36-162 2-141 (200)
97 PRK13191 putative peroxiredoxi 99.5 2.2E-14 4.7E-19 131.5 9.8 118 37-162 8-140 (215)
98 COG0450 AhpC Peroxiredoxin [Po 99.5 5.6E-14 1.2E-18 122.6 10.6 142 200-360 3-160 (194)
99 cd03016 PRX_1cys Peroxiredoxin 99.5 4.6E-14 1E-18 128.6 10.5 117 38-162 1-133 (203)
100 cd03013 PRX5_like Peroxiredoxi 99.5 4.1E-14 8.8E-19 123.3 9.7 118 202-331 1-138 (155)
101 TIGR01626 ytfJ_HI0045 conserve 99.5 2.9E-14 6.2E-19 126.2 8.1 101 50-162 48-163 (184)
102 cd02954 DIM1 Dim1 family; Dim1 99.5 1E-13 2.2E-18 112.8 10.1 73 225-331 13-85 (114)
103 TIGR02738 TrbB type-F conjugat 99.5 7.5E-14 1.6E-18 120.6 9.7 86 215-328 44-133 (153)
104 KOG0910 Thioredoxin-like prote 99.5 7.3E-14 1.6E-18 117.1 9.0 72 226-331 61-132 (150)
105 cd02948 TRX_NDPK TRX domain, T 99.5 1.5E-13 3.2E-18 111.2 10.1 72 225-330 16-87 (102)
106 PRK13189 peroxiredoxin; Provis 99.5 1.5E-13 3.3E-18 126.6 10.4 118 37-162 10-142 (222)
107 cd02950 TxlA TRX-like protein 99.5 8.4E-14 1.8E-18 119.4 7.5 86 48-161 5-92 (142)
108 cd02963 TRX_DnaJ TRX domain, D 99.5 2.9E-13 6.3E-18 111.2 10.1 74 224-330 22-95 (111)
109 PTZ00253 tryparedoxin peroxida 99.5 2E-13 4.2E-18 124.1 9.9 118 37-161 7-142 (199)
110 PHA02278 thioredoxin-like prot 99.5 4.3E-13 9.3E-18 108.2 9.6 77 225-331 13-89 (103)
111 cd02954 DIM1 Dim1 family; Dim1 99.5 4.8E-13 1E-17 108.9 9.8 72 60-162 13-84 (114)
112 PRK10606 btuE putative glutath 99.4 7.6E-13 1.7E-17 117.8 11.4 77 41-120 4-89 (183)
113 cd02985 TRX_CDSP32 TRX family, 99.4 3.8E-13 8.2E-18 108.9 8.5 75 58-161 12-86 (103)
114 cd02999 PDI_a_ERp44_like PDIa 99.4 4.2E-13 9.2E-18 108.0 8.7 71 222-326 14-84 (100)
115 cd02956 ybbN ybbN protein fami 99.4 8.6E-13 1.9E-17 105.2 10.4 72 225-330 11-82 (96)
116 cd02951 SoxW SoxW family; SoxW 99.4 1.6E-12 3.4E-17 109.2 10.8 88 225-332 12-104 (125)
117 TIGR02738 TrbB type-F conjugat 99.4 3.9E-13 8.4E-18 116.2 7.2 88 50-160 43-133 (153)
118 COG3118 Thioredoxin domain-con 99.4 1.2E-12 2.7E-17 121.3 9.3 74 224-331 41-114 (304)
119 cd02999 PDI_a_ERp44_like PDIa 99.4 1.3E-12 2.8E-17 105.2 8.2 68 57-151 14-81 (100)
120 KOG0907 Thioredoxin [Posttrans 99.4 1.7E-12 3.7E-17 104.8 8.8 70 225-329 20-89 (106)
121 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 2.1E-12 4.5E-17 104.1 9.1 73 224-330 16-88 (101)
122 TIGR01130 ER_PDI_fam protein d 99.4 7E-12 1.5E-16 128.6 15.4 68 60-151 17-84 (462)
123 PRK09381 trxA thioredoxin; Pro 99.4 3.7E-12 8E-17 104.2 10.3 71 226-330 21-91 (109)
124 PHA02278 thioredoxin-like prot 99.4 1.6E-12 3.4E-17 104.9 7.8 75 60-161 13-87 (103)
125 TIGR02740 TraF-like TraF-like 99.4 3.1E-12 6.7E-17 121.3 10.1 87 218-328 158-244 (271)
126 KOG0910 Thioredoxin-like prote 99.3 1.4E-12 3E-17 109.5 6.4 71 60-161 60-130 (150)
127 cd02948 TRX_NDPK TRX domain, T 99.3 4.6E-12 9.9E-17 102.4 8.6 71 60-161 16-86 (102)
128 cd03006 PDI_a_EFP1_N PDIa fami 99.3 4.9E-12 1.1E-16 103.8 8.7 71 225-329 28-99 (113)
129 cd02962 TMX2 TMX2 family; comp 99.3 8.6E-12 1.9E-16 107.6 10.2 89 225-346 46-140 (152)
130 PLN00410 U5 snRNP protein, DIM 99.3 1.1E-11 2.5E-16 104.8 10.6 98 225-362 22-121 (142)
131 PF02630 SCO1-SenC: SCO1/SenC; 99.3 1.1E-11 2.3E-16 110.2 10.9 121 202-330 28-171 (174)
132 cd02953 DsbDgamma DsbD gamma f 99.3 6.5E-12 1.4E-16 101.8 8.7 78 225-331 10-91 (104)
133 cd02963 TRX_DnaJ TRX domain, D 99.3 6.2E-12 1.3E-16 103.3 8.5 74 58-161 21-94 (111)
134 cd02956 ybbN ybbN protein fami 99.3 9E-12 2E-16 99.3 8.9 70 60-160 11-80 (96)
135 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 5.6E-12 1.2E-16 101.6 7.7 70 59-159 16-85 (101)
136 cd03000 PDI_a_TMX3 PDIa family 99.3 2.2E-11 4.8E-16 98.7 11.3 71 225-326 14-84 (104)
137 cd02994 PDI_a_TMX PDIa family, 99.3 1.7E-11 3.7E-16 98.7 10.5 68 225-326 16-83 (101)
138 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 1.1E-11 2.4E-16 100.4 8.9 72 226-330 19-90 (104)
139 PRK10996 thioredoxin 2; Provis 99.3 2.6E-11 5.7E-16 103.6 11.5 72 225-330 51-122 (139)
140 PF13098 Thioredoxin_2: Thiore 99.3 4.7E-12 1E-16 104.0 6.6 96 225-330 4-99 (112)
141 cd02986 DLP Dim1 family, Dim1- 99.3 2E-11 4.4E-16 98.6 8.9 72 225-330 13-84 (114)
142 cd03013 PRX5_like Peroxiredoxi 99.3 1.6E-11 3.5E-16 106.9 9.0 116 38-162 1-137 (155)
143 cd02996 PDI_a_ERp44 PDIa famil 99.3 2.8E-11 6E-16 98.8 9.8 74 226-327 18-91 (108)
144 cd02959 ERp19 Endoplasmic reti 99.3 1.2E-11 2.6E-16 102.4 7.6 76 222-329 15-92 (117)
145 cd02989 Phd_like_TxnDC9 Phosdu 99.3 3.4E-11 7.3E-16 99.1 9.7 71 226-331 22-92 (113)
146 cd02993 PDI_a_APS_reductase PD 99.3 2.7E-11 5.9E-16 99.1 8.8 73 225-328 20-93 (109)
147 cd03002 PDI_a_MPD1_like PDI fa 99.2 4E-11 8.6E-16 97.8 9.8 69 225-324 17-85 (109)
148 cd02984 TRX_PICOT TRX domain, 99.2 3.9E-11 8.6E-16 95.7 9.4 72 226-331 14-85 (97)
149 KOG0907 Thioredoxin [Posttrans 99.2 1.3E-11 2.7E-16 99.8 6.5 69 61-161 21-89 (106)
150 PF00085 Thioredoxin: Thioredo 99.2 6.7E-11 1.5E-15 95.1 10.7 72 225-330 16-87 (103)
151 cd03006 PDI_a_EFP1_N PDIa fami 99.2 3.3E-11 7.2E-16 98.8 8.9 68 60-158 28-96 (113)
152 PF02630 SCO1-SenC: SCO1/SenC; 99.2 7.4E-11 1.6E-15 104.8 11.9 120 38-161 28-170 (174)
153 cd02986 DLP Dim1 family, Dim1- 99.2 3.3E-11 7.1E-16 97.4 8.5 71 60-161 13-83 (114)
154 cd02949 TRX_NTR TRX domain, no 99.2 6.9E-11 1.5E-15 94.5 10.3 72 225-330 12-83 (97)
155 cd03005 PDI_a_ERp46 PDIa famil 99.2 7.2E-11 1.6E-15 95.0 10.3 72 228-330 18-89 (102)
156 TIGR02740 TraF-like TraF-like 99.2 1.7E-11 3.8E-16 116.1 7.7 90 50-160 155-244 (271)
157 cd02951 SoxW SoxW family; SoxW 99.2 3.6E-11 7.9E-16 100.8 8.6 85 60-161 12-101 (125)
158 cd03065 PDI_b_Calsequestrin_N 99.2 5.7E-11 1.2E-15 98.2 9.5 71 227-329 28-102 (120)
159 cd02965 HyaE HyaE family; HyaE 99.2 4E-11 8.7E-16 97.0 7.9 74 225-332 26-101 (111)
160 cd02957 Phd_like Phosducin (Ph 99.2 5.3E-11 1.2E-15 98.0 8.8 71 226-332 24-94 (113)
161 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 6.2E-11 1.3E-15 96.0 9.0 65 60-151 18-82 (104)
162 TIGR01126 pdi_dom protein disu 99.2 6.9E-11 1.5E-15 94.9 9.1 71 225-326 12-82 (102)
163 PTZ00443 Thioredoxin domain-co 99.2 7.8E-11 1.7E-15 108.1 10.5 71 226-330 52-122 (224)
164 cd02962 TMX2 TMX2 family; comp 99.2 7.6E-11 1.7E-15 101.7 9.8 74 60-163 46-125 (152)
165 cd03000 PDI_a_TMX3 PDIa family 99.2 8.1E-11 1.8E-15 95.4 9.2 67 60-150 14-80 (104)
166 cd03002 PDI_a_MPD1_like PDI fa 99.2 6.1E-11 1.3E-15 96.8 8.2 67 60-151 17-83 (109)
167 TIGR01068 thioredoxin thioredo 99.2 1.5E-10 3.2E-15 92.7 10.3 71 226-330 14-84 (101)
168 cd02992 PDI_a_QSOX PDIa family 99.2 1.7E-10 3.7E-15 95.1 10.9 75 226-329 19-93 (114)
169 cd03005 PDI_a_ERp46 PDIa famil 99.2 5.4E-11 1.2E-15 95.7 7.1 69 63-159 18-86 (102)
170 cd02994 PDI_a_TMX PDIa family, 99.2 6.8E-11 1.5E-15 95.2 7.6 69 59-158 15-83 (101)
171 PTZ00051 thioredoxin; Provisio 99.2 1E-10 2.2E-15 93.5 8.6 73 225-332 17-89 (98)
172 PLN00410 U5 snRNP protein, DIM 99.2 9.2E-11 2E-15 99.3 8.4 68 60-157 22-89 (142)
173 cd02996 PDI_a_ERp44 PDIa famil 99.2 5.7E-11 1.2E-15 96.9 7.0 72 60-159 17-91 (108)
174 cd02993 PDI_a_APS_reductase PD 99.2 1.3E-10 2.8E-15 95.1 9.0 67 60-151 20-87 (109)
175 PTZ00062 glutaredoxin; Provisi 99.2 2.1E-10 4.5E-15 103.5 10.8 60 62-161 18-77 (204)
176 PRK09381 trxA thioredoxin; Pro 99.2 1.2E-10 2.6E-15 95.1 8.5 83 48-161 7-90 (109)
177 cd02997 PDI_a_PDIR PDIa family 99.2 1.9E-10 4E-15 92.9 9.5 76 225-330 16-91 (104)
178 PTZ00062 glutaredoxin; Provisi 99.2 9.2E-11 2E-15 105.8 8.0 109 227-397 18-134 (204)
179 COG3118 Thioredoxin domain-con 99.2 7.8E-11 1.7E-15 109.4 7.6 71 60-161 42-112 (304)
180 PRK10996 thioredoxin 2; Provis 99.1 1.4E-10 2.9E-15 99.2 8.3 71 60-161 51-121 (139)
181 cd02992 PDI_a_QSOX PDIa family 99.1 2.7E-10 5.9E-15 93.9 9.8 69 61-151 19-87 (114)
182 KOG0855 Alkyl hydroperoxide re 99.1 2.6E-10 5.7E-15 96.0 9.5 115 199-325 62-186 (211)
183 COG1999 Uncharacterized protei 99.1 8.4E-10 1.8E-14 100.5 13.6 133 208-362 49-205 (207)
184 cd02953 DsbDgamma DsbD gamma f 99.1 2.4E-10 5.2E-15 92.5 8.9 75 60-159 10-87 (104)
185 KOG2792 Putative cytochrome C 99.1 7.4E-10 1.6E-14 100.2 12.4 140 202-362 113-276 (280)
186 cd02955 SSP411 TRX domain, SSP 99.1 1.1E-09 2.4E-14 91.2 12.4 84 224-332 13-99 (124)
187 TIGR02187 GlrX_arch Glutaredox 99.1 2.3E-10 5.1E-15 105.3 9.0 71 224-327 17-90 (215)
188 TIGR01130 ER_PDI_fam protein d 99.1 2.9E-09 6.4E-14 109.1 18.2 181 70-325 244-431 (462)
189 cd02959 ERp19 Endoplasmic reti 99.1 1.8E-10 3.9E-15 95.4 7.4 76 57-161 15-92 (117)
190 cd02998 PDI_a_ERp38 PDIa famil 99.1 3.5E-10 7.6E-15 91.3 9.0 74 226-329 18-91 (105)
191 cd03001 PDI_a_P5 PDIa family, 99.1 6.6E-10 1.4E-14 89.5 10.1 65 226-323 18-82 (103)
192 cd02997 PDI_a_PDIR PDIa family 99.1 3.6E-10 7.8E-15 91.2 8.5 73 60-159 16-88 (104)
193 cd02975 PfPDO_like_N Pyrococcu 99.1 1E-09 2.2E-14 90.3 10.8 64 226-323 22-85 (113)
194 cd02952 TRP14_like Human TRX-r 99.1 2.5E-10 5.4E-15 94.1 7.1 79 60-161 20-106 (119)
195 cd02949 TRX_NTR TRX domain, no 99.1 5.2E-10 1.1E-14 89.4 8.7 71 60-161 12-82 (97)
196 cd02952 TRP14_like Human TRX-r 99.1 3.2E-10 6.9E-15 93.4 7.5 79 225-329 20-106 (119)
197 cd02965 HyaE HyaE family; HyaE 99.1 3.9E-10 8.5E-15 91.3 7.7 71 60-161 26-98 (111)
198 cd02987 Phd_like_Phd Phosducin 99.1 6.4E-10 1.4E-14 98.7 9.8 71 226-332 83-153 (175)
199 PF13098 Thioredoxin_2: Thiore 99.1 4.6E-10 1E-14 92.0 8.0 95 60-161 4-98 (112)
200 cd02984 TRX_PICOT TRX domain, 99.1 6.3E-10 1.4E-14 88.7 8.4 70 61-161 14-83 (97)
201 KOG0191 Thioredoxin/protein di 99.1 1.9E-10 4.1E-15 115.2 6.5 127 226-401 47-184 (383)
202 COG0386 BtuE Glutathione perox 99.1 2.7E-09 5.8E-14 89.4 12.0 115 206-331 5-144 (162)
203 COG0450 AhpC Peroxiredoxin [Po 99.1 6.6E-10 1.4E-14 97.3 8.6 121 35-161 2-139 (194)
204 PTZ00051 thioredoxin; Provisio 99.0 6.1E-10 1.3E-14 89.0 7.8 70 60-161 17-86 (98)
205 TIGR01126 pdi_dom protein disu 99.0 5.7E-10 1.2E-14 89.5 7.6 67 60-151 12-78 (102)
206 KOG0908 Thioredoxin-like prote 99.0 5.9E-10 1.3E-14 100.3 8.3 96 221-366 16-111 (288)
207 TIGR00411 redox_disulf_1 small 99.0 1.6E-09 3.6E-14 83.4 9.5 62 229-326 2-63 (82)
208 cd02961 PDI_a_family Protein D 99.0 1.1E-09 2.3E-14 87.3 8.5 73 226-329 15-87 (101)
209 cd02989 Phd_like_TxnDC9 Phosdu 99.0 1.1E-09 2.4E-14 90.0 8.8 70 60-161 21-90 (113)
210 TIGR01295 PedC_BrcD bacterioci 99.0 1.5E-09 3.2E-14 90.5 9.3 79 226-330 23-106 (122)
211 PF00085 Thioredoxin: Thioredo 99.0 1.3E-09 2.8E-14 87.6 8.6 69 61-160 17-85 (103)
212 PTZ00443 Thioredoxin domain-co 99.0 9.9E-10 2.1E-14 100.8 8.1 69 61-160 52-120 (224)
213 cd03065 PDI_b_Calsequestrin_N 99.0 1E-09 2.3E-14 90.7 7.4 70 61-160 27-101 (120)
214 cd02957 Phd_like Phosducin (Ph 99.0 1.1E-09 2.5E-14 90.0 7.3 68 61-161 24-91 (113)
215 cd03001 PDI_a_P5 PDIa family, 99.0 2.3E-09 5.1E-14 86.3 8.7 64 61-151 18-81 (103)
216 cd02955 SSP411 TRX domain, SSP 99.0 5.2E-09 1.1E-13 87.2 10.6 82 59-162 13-97 (124)
217 cd02998 PDI_a_ERp38 PDIa famil 99.0 3.3E-09 7.2E-14 85.5 8.8 67 61-151 18-84 (105)
218 cd02988 Phd_like_VIAF Phosduci 99.0 2.6E-09 5.6E-14 96.0 8.7 69 226-332 102-170 (192)
219 TIGR01068 thioredoxin thioredo 99.0 3.4E-09 7.4E-14 84.7 8.6 68 61-159 14-81 (101)
220 TIGR00424 APS_reduc 5'-adenyly 98.9 3.5E-09 7.6E-14 106.7 10.1 70 224-324 369-438 (463)
221 TIGR01295 PedC_BrcD bacterioci 98.9 3.8E-09 8.2E-14 88.0 8.4 80 60-161 22-105 (122)
222 KOG0852 Alkyl hydroperoxide re 98.9 8E-09 1.7E-13 88.1 9.8 119 203-331 7-141 (196)
223 cd02995 PDI_a_PDI_a'_C PDIa fa 98.9 6.4E-09 1.4E-13 83.7 8.6 67 226-324 18-84 (104)
224 cd02975 PfPDO_like_N Pyrococcu 98.9 5.8E-09 1.3E-13 85.8 8.3 63 61-151 22-84 (113)
225 cd02961 PDI_a_family Protein D 98.9 9E-09 2E-13 81.8 8.9 67 60-151 14-80 (101)
226 PLN02309 5'-adenylylsulfate re 98.9 9.1E-09 2E-13 103.7 10.6 68 225-323 364-432 (457)
227 cd02960 AGR Anterior Gradient 98.9 1.3E-08 2.7E-13 84.9 9.6 101 224-362 21-124 (130)
228 cd02947 TRX_family TRX family; 98.9 1.5E-08 3.2E-13 79.0 9.5 69 227-330 11-79 (93)
229 KOG0855 Alkyl hydroperoxide re 98.9 9.3E-09 2E-13 86.8 8.5 110 37-151 64-183 (211)
230 COG1999 Uncharacterized protei 98.9 2.6E-08 5.7E-13 90.7 12.0 114 44-161 49-186 (207)
231 PTZ00102 disulphide isomerase; 98.9 1.7E-08 3.6E-13 104.2 12.1 72 225-326 48-119 (477)
232 TIGR00424 APS_reduc 5'-adenyly 98.9 7.5E-09 1.6E-13 104.3 8.9 68 60-151 370-437 (463)
233 cd02995 PDI_a_PDI_a'_C PDIa fa 98.8 2.1E-08 4.5E-13 80.7 9.0 65 61-151 18-82 (104)
234 KOG0908 Thioredoxin-like prote 98.8 4.8E-09 1E-13 94.5 5.4 72 56-159 16-87 (288)
235 PRK00293 dipZ thiol:disulfide 98.8 1.8E-08 3.8E-13 105.6 10.5 74 224-327 472-548 (571)
236 cd02987 Phd_like_Phd Phosducin 98.8 1.1E-08 2.5E-13 90.6 7.3 68 61-161 83-150 (175)
237 KOG0190 Protein disulfide isom 98.8 1.5E-08 3.4E-13 101.6 8.5 77 225-332 41-118 (493)
238 cd02982 PDI_b'_family Protein 98.7 4.8E-08 1E-12 78.6 8.8 65 225-322 11-77 (103)
239 KOG0912 Thiol-disulfide isomer 98.7 4.2E-08 9.1E-13 90.8 9.2 95 226-362 13-107 (375)
240 KOG1651 Glutathione peroxidase 98.7 5.4E-08 1.2E-12 82.7 8.8 118 205-332 13-154 (171)
241 COG2077 Tpx Peroxiredoxin [Pos 98.7 1E-07 2.3E-12 79.6 10.2 120 202-334 20-151 (158)
242 TIGR00412 redox_disulf_2 small 98.7 8.3E-08 1.8E-12 72.9 8.4 60 231-329 3-62 (76)
243 PLN02309 5'-adenylylsulfate re 98.7 5.2E-08 1.1E-12 98.3 9.1 67 60-151 364-431 (457)
244 cd02973 TRX_GRX_like Thioredox 98.7 7.5E-08 1.6E-12 71.2 7.6 64 229-329 2-65 (67)
245 PHA02125 thioredoxin-like prot 98.7 1E-07 2.3E-12 72.2 8.3 57 230-329 2-58 (75)
246 cd02947 TRX_family TRX family; 98.7 8.3E-08 1.8E-12 74.7 8.0 67 61-159 10-76 (93)
247 cd02988 Phd_like_VIAF Phosduci 98.7 5E-08 1.1E-12 87.7 7.6 67 61-162 102-168 (192)
248 cd02958 UAS UAS family; UAS is 98.7 2.9E-07 6.3E-12 75.8 11.4 79 223-332 14-96 (114)
249 TIGR00411 redox_disulf_1 small 98.6 1.1E-07 2.5E-12 73.0 7.5 58 64-148 2-59 (82)
250 cd03007 PDI_a_ERp29_N PDIa fam 98.6 2.8E-07 6E-12 75.5 9.5 73 225-325 17-91 (116)
251 PRK00293 dipZ thiol:disulfide 98.6 9.7E-08 2.1E-12 100.1 8.7 76 57-159 470-548 (571)
252 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.4E-07 3E-12 73.9 7.4 72 221-329 7-78 (89)
253 KOG0854 Alkyl hydroperoxide re 98.6 3.9E-07 8.5E-12 77.8 10.0 138 202-360 8-167 (224)
254 PF13728 TraF: F plasmid trans 98.5 3.6E-07 7.7E-12 83.7 9.3 85 221-329 115-199 (215)
255 cd02982 PDI_b'_family Protein 98.5 2.7E-07 5.8E-12 74.2 7.1 64 61-151 12-77 (103)
256 KOG2792 Putative cytochrome C 98.5 6.6E-07 1.4E-11 81.3 10.2 117 43-163 120-259 (280)
257 KOG1731 FAD-dependent sulfhydr 98.5 4.3E-07 9.3E-12 91.2 8.8 81 49-151 44-125 (606)
258 PF07649 C1_3: C1-like domain; 98.5 3.6E-08 7.8E-13 60.4 0.7 28 390-417 2-30 (30)
259 TIGR02739 TraF type-F conjugat 98.5 8.7E-07 1.9E-11 82.7 10.2 107 221-364 145-251 (256)
260 KOG4277 Uncharacterized conser 98.5 1.1E-07 2.5E-12 87.7 4.2 75 227-332 44-118 (468)
261 TIGR03143 AhpF_homolog putativ 98.4 6.1E-06 1.3E-10 86.8 16.8 181 57-329 362-542 (555)
262 cd02973 TRX_GRX_like Thioredox 98.4 6.7E-07 1.4E-11 66.0 6.8 57 64-148 2-58 (67)
263 PRK13703 conjugal pilus assemb 98.4 1.6E-06 3.4E-11 80.5 9.6 106 222-364 139-244 (248)
264 COG0386 BtuE Glutathione perox 98.4 1.8E-06 3.8E-11 72.7 8.1 116 42-163 5-144 (162)
265 cd02960 AGR Anterior Gradient 98.4 2.8E-06 6.1E-11 70.9 9.2 72 59-161 21-95 (130)
266 PF13899 Thioredoxin_7: Thiore 98.3 1.3E-06 2.9E-11 67.3 6.8 46 224-279 15-63 (82)
267 TIGR00412 redox_disulf_2 small 98.3 1.6E-06 3.4E-11 65.9 6.8 53 66-148 3-55 (76)
268 PF00255 GSHPx: Glutathione pe 98.3 2.9E-06 6.2E-11 68.6 8.4 60 208-278 3-63 (108)
269 PHA02125 thioredoxin-like prot 98.3 1.4E-06 2.9E-11 66.1 6.2 50 65-147 2-51 (75)
270 PF13899 Thioredoxin_7: Thiore 98.3 2E-06 4.4E-11 66.3 6.6 44 59-105 15-61 (82)
271 KOG0912 Thiol-disulfide isomer 98.3 1.6E-06 3.6E-11 80.5 7.0 75 61-161 13-87 (375)
272 smart00594 UAS UAS domain. 98.3 6.8E-06 1.5E-10 68.5 10.1 70 224-324 25-97 (122)
273 KOG0852 Alkyl hydroperoxide re 98.3 3.4E-06 7.3E-11 72.3 7.8 117 39-161 7-139 (196)
274 PF03107 C1_2: C1 domain; Int 98.2 6.4E-07 1.4E-11 54.8 2.1 29 389-417 1-30 (30)
275 PF00255 GSHPx: Glutathione pe 98.2 5.6E-06 1.2E-10 66.9 8.2 60 44-106 3-63 (108)
276 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 3.6E-06 7.9E-11 65.9 6.8 65 56-148 7-71 (89)
277 KOG4277 Uncharacterized conser 98.2 1.1E-06 2.4E-11 81.3 4.3 66 62-151 44-109 (468)
278 PF13728 TraF: F plasmid trans 98.2 3.9E-06 8.4E-11 76.9 7.5 80 56-156 115-194 (215)
279 PF14595 Thioredoxin_9: Thiore 98.2 2.8E-06 6.1E-11 71.3 5.8 78 223-331 38-115 (129)
280 cd03007 PDI_a_ERp29_N PDIa fam 98.2 4.1E-06 9E-11 68.6 5.9 69 60-151 17-89 (116)
281 COG2077 Tpx Peroxiredoxin [Pos 98.1 2.5E-05 5.3E-10 65.6 9.9 125 37-170 19-155 (158)
282 cd02958 UAS UAS family; UAS is 98.1 1.5E-05 3.3E-10 65.4 8.8 77 58-161 14-93 (114)
283 PF00837 T4_deiodinase: Iodoth 98.1 3E-05 6.4E-10 70.8 11.2 136 201-359 74-235 (237)
284 COG0526 TrxA Thiol-disulfide i 98.1 1.2E-05 2.5E-10 64.9 7.9 71 53-150 24-97 (127)
285 cd01659 TRX_superfamily Thiore 98.1 1.6E-05 3.5E-10 56.5 7.8 63 230-323 1-63 (69)
286 COG0526 TrxA Thiol-disulfide i 98.1 1.1E-05 2.4E-10 65.0 7.4 72 221-325 27-100 (127)
287 TIGR02739 TraF type-F conjugat 98.1 9E-06 2E-10 75.9 7.0 78 56-151 145-222 (256)
288 KOG1731 FAD-dependent sulfhydr 98.0 5.1E-06 1.1E-10 83.7 5.0 69 227-323 58-126 (606)
289 PF03190 Thioredox_DsbH: Prote 98.0 4.1E-05 8.9E-10 66.3 9.8 81 224-330 35-119 (163)
290 PRK13703 conjugal pilus assemb 98.0 1.3E-05 2.7E-10 74.5 6.6 78 56-151 138-215 (248)
291 smart00594 UAS UAS domain. 97.9 4.4E-05 9.6E-10 63.6 7.9 71 58-156 24-97 (122)
292 cd01659 TRX_superfamily Thiore 97.9 6E-05 1.3E-09 53.4 7.3 62 65-151 1-62 (69)
293 PF14595 Thioredoxin_9: Thiore 97.8 2.3E-05 4.9E-10 65.8 4.9 78 56-161 36-113 (129)
294 PRK11509 hydrogenase-1 operon 97.8 0.00026 5.6E-09 59.3 10.6 89 229-364 37-127 (132)
295 KOG1651 Glutathione peroxidase 97.8 0.00011 2.3E-09 62.9 7.8 63 41-105 13-76 (171)
296 COG2143 Thioredoxin-related pr 97.8 0.00063 1.4E-08 57.5 11.9 86 223-329 39-131 (182)
297 TIGR02200 GlrX_actino Glutared 97.7 0.00015 3.3E-09 54.6 7.6 63 230-329 2-65 (77)
298 COG4232 Thiol:disulfide interc 97.6 9.4E-05 2E-09 75.5 6.4 78 224-329 472-550 (569)
299 TIGR02196 GlrX_YruB Glutaredox 97.6 0.0005 1.1E-08 50.9 8.9 59 230-326 2-60 (74)
300 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00023 5E-09 52.8 6.5 55 65-148 2-56 (74)
301 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00016 3.4E-09 55.5 5.7 65 230-327 1-65 (84)
302 cd02991 UAS_ETEA UAS family, E 97.6 0.00098 2.1E-08 54.9 10.6 74 224-329 15-95 (116)
303 COG4232 Thiol:disulfide interc 97.5 0.00016 3.4E-09 73.9 6.1 75 59-158 472-547 (569)
304 PF06110 DUF953: Eukaryotic pr 97.5 0.00054 1.2E-08 56.4 8.1 78 225-328 18-104 (119)
305 PRK11657 dsbG disulfide isomer 97.5 0.00083 1.8E-08 63.2 10.3 95 224-330 115-236 (251)
306 PF00837 T4_deiodinase: Iodoth 97.5 0.00017 3.6E-09 65.9 5.3 65 37-102 74-142 (237)
307 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00026 5.7E-09 54.3 5.8 61 65-150 1-61 (84)
308 TIGR02200 GlrX_actino Glutared 97.4 0.00064 1.4E-08 51.1 7.0 63 65-161 2-65 (77)
309 PF03190 Thioredox_DsbH: Prote 97.4 0.00061 1.3E-08 59.1 7.4 80 58-161 34-118 (163)
310 KOG0914 Thioredoxin-like prote 97.4 0.00028 6E-09 62.9 5.2 91 225-350 143-240 (265)
311 PF06110 DUF953: Eukaryotic pr 97.3 0.00044 9.5E-09 56.9 5.8 74 60-151 18-98 (119)
312 PF13192 Thioredoxin_3: Thiore 97.3 0.0043 9.3E-08 46.9 10.5 58 234-330 6-63 (76)
313 PRK10877 protein disulfide iso 97.3 0.0037 8E-08 58.1 12.2 88 225-327 106-214 (232)
314 KOG0854 Alkyl hydroperoxide re 97.3 0.0016 3.4E-08 56.2 8.4 114 38-159 8-144 (224)
315 PRK11200 grxA glutaredoxin 1; 97.2 0.0022 4.9E-08 49.5 8.3 66 230-328 3-70 (85)
316 cd02340 ZZ_NBR1_like Zinc fing 97.2 0.00022 4.8E-09 47.4 1.7 30 390-419 2-32 (43)
317 PRK15317 alkyl hydroperoxide r 97.2 0.018 4E-07 60.1 17.0 71 222-329 112-182 (517)
318 COG2143 Thioredoxin-related pr 97.1 0.0026 5.7E-08 53.8 8.1 86 58-160 39-130 (182)
319 cd03020 DsbA_DsbC_DsbG DsbA fa 97.0 0.0041 9E-08 56.2 9.3 95 219-327 70-184 (197)
320 KOG0911 Glutaredoxin-related p 96.9 0.00064 1.4E-08 61.1 3.3 70 225-329 16-85 (227)
321 cd02991 UAS_ETEA UAS family, E 96.9 0.0038 8.3E-08 51.4 7.6 66 58-151 14-85 (116)
322 TIGR03140 AhpF alkyl hydropero 96.9 0.042 9.2E-07 57.4 16.8 65 221-319 112-176 (515)
323 PF00462 Glutaredoxin: Glutare 96.8 0.0071 1.5E-07 43.2 7.3 59 230-326 1-59 (60)
324 PF05988 DUF899: Bacterial pro 96.8 0.016 3.4E-07 52.2 10.6 113 204-329 44-171 (211)
325 cd02339 ZZ_Mind_bomb Zinc fing 96.7 0.00096 2.1E-08 44.7 1.7 30 390-419 2-33 (45)
326 cd03020 DsbA_DsbC_DsbG DsbA fa 96.6 0.018 3.9E-07 52.1 9.8 95 54-158 70-183 (197)
327 cd02249 ZZ Zinc finger, ZZ typ 96.5 0.0015 3.3E-08 44.1 1.7 33 389-421 1-34 (46)
328 PF02114 Phosducin: Phosducin; 96.5 0.013 2.8E-07 55.4 8.4 72 225-332 145-216 (265)
329 PF04592 SelP_N: Selenoprotein 96.5 0.038 8.2E-07 50.4 10.9 116 204-330 8-126 (238)
330 cd02972 DsbA_family DsbA famil 96.4 0.0067 1.4E-07 47.2 5.5 81 230-321 1-91 (98)
331 PF00462 Glutaredoxin: Glutare 96.4 0.016 3.5E-07 41.3 6.6 55 65-148 1-55 (60)
332 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.011 2.3E-07 45.0 6.0 63 230-327 2-64 (82)
333 PRK11200 grxA glutaredoxin 1; 96.3 0.011 2.3E-07 45.7 5.9 40 64-107 2-41 (85)
334 PF05176 ATP-synt_10: ATP10 pr 96.3 0.047 1E-06 51.2 11.1 133 205-358 100-250 (252)
335 cd02343 ZZ_EF Zinc finger, ZZ 96.3 0.0018 3.9E-08 43.7 1.2 30 390-419 2-32 (48)
336 cd02342 ZZ_UBA_plant Zinc fing 96.2 0.0026 5.6E-08 41.6 1.4 31 390-420 2-34 (43)
337 KOG3425 Uncharacterized conser 96.2 0.0075 1.6E-07 48.8 4.3 72 60-151 24-104 (128)
338 cd02976 NrdH NrdH-redoxin (Nrd 96.1 0.029 6.3E-07 41.1 7.3 55 230-319 2-56 (73)
339 PRK11657 dsbG disulfide isomer 96.1 0.024 5.3E-07 53.3 8.1 91 60-158 116-232 (251)
340 PRK10877 protein disulfide iso 96.1 0.054 1.2E-06 50.3 10.3 83 60-148 106-208 (232)
341 KOG0914 Thioredoxin-like prote 96.1 0.0077 1.7E-07 53.9 4.3 72 60-161 143-220 (265)
342 KOG3425 Uncharacterized conser 96.0 0.023 4.9E-07 46.1 6.4 71 226-322 25-104 (128)
343 COG0678 AHP1 Peroxiredoxin [Po 96.0 0.031 6.7E-07 47.2 7.5 118 201-330 4-145 (165)
344 PF13848 Thioredoxin_6: Thiore 96.0 0.56 1.2E-05 41.3 16.3 68 226-326 94-164 (184)
345 cd03419 GRX_GRXh_1_2_like Glut 96.0 0.019 4.1E-07 43.6 5.7 59 65-150 2-60 (82)
346 PF13192 Thioredoxin_3: Thiore 96.0 0.023 4.9E-07 42.9 6.0 52 68-150 5-56 (76)
347 cd02334 ZZ_dystrophin Zinc fin 96.0 0.0041 8.8E-08 42.5 1.7 30 390-419 2-33 (49)
348 cd02976 NrdH NrdH-redoxin (Nrd 95.9 0.028 6E-07 41.2 6.3 55 65-148 2-56 (73)
349 TIGR02183 GRXA Glutaredoxin, G 95.9 0.034 7.5E-07 43.0 6.8 65 230-327 2-68 (86)
350 cd02341 ZZ_ZZZ3 Zinc finger, Z 95.8 0.0055 1.2E-07 41.7 1.7 31 389-419 1-35 (48)
351 cd02344 ZZ_HERC2 Zinc finger, 95.7 0.0065 1.4E-07 40.6 1.7 30 390-419 2-33 (45)
352 cd02972 DsbA_family DsbA famil 95.7 0.042 9E-07 42.5 6.7 82 65-150 1-91 (98)
353 TIGR02190 GlrX-dom Glutaredoxi 95.6 0.056 1.2E-06 41.0 7.1 60 229-327 9-68 (79)
354 TIGR03143 AhpF_homolog putativ 95.6 0.088 1.9E-06 55.5 10.9 75 221-329 361-438 (555)
355 PHA03050 glutaredoxin; Provisi 95.5 0.044 9.5E-07 44.4 6.5 61 65-148 15-75 (108)
356 PF00569 ZZ: Zinc finger, ZZ t 95.5 0.0041 8.8E-08 42.1 0.3 33 387-419 3-37 (46)
357 PF09695 YtfJ_HI0045: Bacteria 95.5 0.3 6.4E-06 42.0 11.5 118 218-357 29-157 (160)
358 smart00291 ZnF_ZZ Zinc-binding 95.5 0.011 2.4E-07 39.5 2.2 32 388-419 4-36 (44)
359 PRK11509 hydrogenase-1 operon 95.3 0.04 8.7E-07 46.2 5.6 69 63-161 36-106 (132)
360 cd02335 ZZ_ADA2 Zinc finger, Z 95.3 0.011 2.4E-07 40.5 1.9 31 389-419 1-33 (49)
361 TIGR02189 GlrX-like_plant Glut 95.3 0.055 1.2E-06 43.1 6.0 59 65-150 10-68 (99)
362 TIGR02189 GlrX-like_plant Glut 95.2 0.067 1.4E-06 42.6 6.5 21 230-250 10-30 (99)
363 cd02066 GRX_family Glutaredoxi 95.2 0.072 1.6E-06 38.7 6.1 61 230-328 2-62 (72)
364 PF11009 DUF2847: Protein of u 95.1 0.12 2.5E-06 41.5 7.5 76 226-331 19-95 (105)
365 PHA03050 glutaredoxin; Provisi 95.1 0.044 9.5E-07 44.4 5.1 22 230-251 15-36 (108)
366 PRK10329 glutaredoxin-like pro 94.9 0.35 7.6E-06 36.9 9.4 54 230-319 3-56 (81)
367 TIGR02183 GRXA Glutaredoxin, G 94.8 0.065 1.4E-06 41.4 5.3 39 65-107 2-40 (86)
368 COG4312 Uncharacterized protei 94.8 0.17 3.6E-06 45.5 8.3 93 206-311 52-153 (247)
369 cd02345 ZZ_dah Zinc finger, ZZ 94.8 0.017 3.8E-07 39.5 1.7 30 390-419 2-33 (49)
370 TIGR02194 GlrX_NrdH Glutaredox 94.8 0.24 5.2E-06 36.7 8.0 53 231-319 2-54 (72)
371 cd02338 ZZ_PCMF_like Zinc fing 94.6 0.022 4.8E-07 39.0 1.8 30 390-419 2-33 (49)
372 KOG0913 Thiol-disulfide isomer 94.5 0.0068 1.5E-07 54.9 -1.0 71 229-332 42-112 (248)
373 PF04592 SelP_N: Selenoprotein 94.5 0.17 3.7E-06 46.2 7.8 105 53-161 18-125 (238)
374 cd03029 GRX_hybridPRX5 Glutare 94.5 0.16 3.4E-06 37.6 6.6 59 230-327 3-61 (72)
375 TIGR02190 GlrX-dom Glutaredoxi 94.5 0.14 3E-06 38.8 6.3 58 61-148 6-63 (79)
376 cd03023 DsbA_Com1_like DsbA fa 94.5 0.073 1.6E-06 45.3 5.3 39 60-102 4-42 (154)
377 cd03023 DsbA_Com1_like DsbA fa 94.5 0.075 1.6E-06 45.3 5.3 32 225-256 4-35 (154)
378 KOG3414 Component of the U4/U6 94.4 0.95 2.1E-05 37.2 10.9 80 225-337 22-102 (142)
379 PF13462 Thioredoxin_4: Thiore 94.3 0.15 3.3E-06 43.9 7.1 52 218-277 4-55 (162)
380 PF13462 Thioredoxin_4: Thiore 94.2 0.18 4E-06 43.4 7.4 51 53-104 4-54 (162)
381 COG1331 Highly conserved prote 94.1 0.16 3.5E-06 53.3 7.7 80 225-330 42-125 (667)
382 cd02066 GRX_family Glutaredoxi 94.0 0.12 2.6E-06 37.5 4.9 54 65-147 2-55 (72)
383 KOG4582 Uncharacterized conser 93.9 0.024 5.3E-07 54.0 1.2 33 388-420 152-186 (278)
384 PF05988 DUF899: Bacterial pro 93.9 0.16 3.4E-06 45.8 6.2 99 46-151 51-163 (211)
385 PF02114 Phosducin: Phosducin; 93.8 0.13 2.9E-06 48.6 5.9 69 60-161 145-213 (265)
386 TIGR02181 GRX_bact Glutaredoxi 93.8 0.12 2.7E-06 38.9 4.7 56 65-150 1-56 (79)
387 KOG0911 Glutaredoxin-related p 93.8 0.039 8.6E-07 49.8 2.2 63 60-150 16-78 (227)
388 PF00130 C1_1: Phorbol esters/ 93.7 0.046 1E-06 37.9 2.1 36 386-421 9-47 (53)
389 cd03418 GRX_GRXb_1_3_like Glut 93.7 0.2 4.3E-06 37.2 5.7 35 65-108 2-36 (75)
390 KOG1672 ATP binding protein [P 93.6 0.26 5.7E-06 43.6 6.9 73 225-332 83-155 (211)
391 cd03027 GRX_DEP Glutaredoxin ( 93.3 0.24 5.3E-06 36.7 5.6 56 65-150 3-58 (73)
392 PRK10638 glutaredoxin 3; Provi 93.3 0.4 8.7E-06 36.6 6.9 61 230-328 4-64 (83)
393 cd02337 ZZ_CBP Zinc finger, ZZ 93.0 0.041 8.9E-07 36.1 0.8 31 389-420 1-32 (41)
394 cd03418 GRX_GRXb_1_3_like Glut 92.9 0.31 6.8E-06 36.1 5.8 60 230-327 2-62 (75)
395 cd03029 GRX_hybridPRX5 Glutare 92.8 0.44 9.6E-06 35.1 6.4 55 65-150 3-57 (72)
396 TIGR02181 GRX_bact Glutaredoxi 92.7 0.24 5.2E-06 37.3 4.8 59 231-327 2-60 (79)
397 PF11009 DUF2847: Protein of u 92.6 0.69 1.5E-05 37.1 7.5 78 60-164 18-96 (105)
398 cd00029 C1 Protein kinase C co 92.6 0.07 1.5E-06 36.3 1.6 35 387-421 10-47 (50)
399 TIGR00365 monothiol glutaredox 92.5 0.43 9.4E-06 37.8 6.2 63 227-327 12-78 (97)
400 cd03028 GRX_PICOT_like Glutare 92.4 0.44 9.5E-06 37.1 6.1 64 226-327 7-74 (90)
401 cd03028 GRX_PICOT_like Glutare 92.4 0.43 9.2E-06 37.1 6.0 61 60-150 6-70 (90)
402 TIGR00365 monothiol glutaredox 92.3 0.46 1E-05 37.6 6.2 60 61-150 11-74 (97)
403 cd02983 P5_C P5 family, C-term 92.1 1 2.2E-05 37.8 8.3 76 243-365 41-119 (130)
404 cd03027 GRX_DEP Glutaredoxin ( 92.0 0.48 1E-05 35.1 5.7 61 230-328 3-63 (73)
405 PF13911 AhpC-TSA_2: AhpC/TSA 91.7 0.76 1.6E-05 37.4 7.0 53 248-311 2-54 (115)
406 COG0695 GrxC Glutaredoxin and 91.6 0.85 1.8E-05 34.7 6.7 20 65-84 3-22 (80)
407 KOG0913 Thiol-disulfide isomer 91.5 0.047 1E-06 49.6 -0.4 69 63-161 41-109 (248)
408 COG0695 GrxC Glutaredoxin and 91.5 0.9 1.9E-05 34.5 6.7 20 230-249 3-22 (80)
409 PRK10329 glutaredoxin-like pro 91.2 0.65 1.4E-05 35.4 5.7 36 65-109 3-38 (81)
410 PF02966 DIM1: Mitosis protein 91.0 6.4 0.00014 32.8 11.6 75 225-333 19-95 (133)
411 cd03019 DsbA_DsbA DsbA family, 90.8 0.28 6E-06 43.1 3.9 34 225-258 14-47 (178)
412 PF05768 DUF836: Glutaredoxin- 90.8 1 2.2E-05 34.2 6.5 56 230-321 2-57 (81)
413 KOG1752 Glutaredoxin and relat 90.8 0.85 1.8E-05 36.6 6.2 15 65-79 16-30 (104)
414 KOG3507 DNA-directed RNA polym 90.7 0.091 2E-06 36.6 0.5 26 388-413 20-48 (62)
415 PRK15317 alkyl hydroperoxide r 90.7 0.46 9.9E-06 49.7 6.0 81 40-148 84-175 (517)
416 KOG1752 Glutaredoxin and relat 90.7 0.74 1.6E-05 36.9 5.7 21 230-250 16-36 (104)
417 PRK10638 glutaredoxin 3; Provi 90.5 0.66 1.4E-05 35.3 5.2 56 65-150 4-59 (83)
418 cd03019 DsbA_DsbA DsbA family, 90.1 0.43 9.3E-06 41.8 4.4 40 60-102 14-53 (178)
419 TIGR02194 GlrX_NrdH Glutaredox 89.6 0.99 2.2E-05 33.3 5.4 34 66-108 2-35 (72)
420 KOG3414 Component of the U4/U6 89.6 2.2 4.7E-05 35.1 7.6 65 60-151 22-86 (142)
421 KOG2603 Oligosaccharyltransfer 89.2 5.6 0.00012 38.1 11.1 81 222-327 56-141 (331)
422 PRK10824 glutaredoxin-4; Provi 88.5 0.86 1.9E-05 37.3 4.7 25 61-85 14-42 (115)
423 COG4545 Glutaredoxin-related p 88.5 1.9 4.2E-05 32.0 5.9 71 231-328 5-77 (85)
424 COG1331 Highly conserved prote 88.5 0.61 1.3E-05 49.1 4.7 78 59-160 41-123 (667)
425 COG4312 Uncharacterized protei 88.2 0.79 1.7E-05 41.4 4.6 88 46-140 57-153 (247)
426 PRK10824 glutaredoxin-4; Provi 88.2 0.97 2.1E-05 37.0 4.8 16 236-251 28-43 (115)
427 smart00109 C1 Protein kinase C 87.9 0.2 4.3E-06 33.8 0.5 36 386-421 9-46 (49)
428 cd02336 ZZ_RSC8 Zinc finger, Z 87.8 0.39 8.5E-06 32.1 1.9 33 389-421 1-34 (45)
429 PF02966 DIM1: Mitosis protein 87.3 3.7 8.1E-05 34.1 7.7 45 60-107 19-63 (133)
430 PF13778 DUF4174: Domain of un 87.1 5.3 0.00012 32.8 8.7 91 221-331 3-96 (118)
431 TIGR03140 AhpF alkyl hydropero 86.1 1.1 2.4E-05 46.8 5.2 75 46-148 94-176 (515)
432 cd03072 PDI_b'_ERp44 PDIb' fam 85.6 6.4 0.00014 31.9 8.4 52 241-325 29-85 (111)
433 cd03073 PDI_b'_ERp72_ERp57 PDI 85.3 4.4 9.5E-05 32.9 7.2 51 241-324 33-88 (111)
434 COG0678 AHP1 Peroxiredoxin [Po 85.0 1.6 3.5E-05 37.1 4.5 114 37-160 4-143 (165)
435 KOG2507 Ubiquitin regulatory p 84.9 6.7 0.00014 39.0 9.3 45 303-361 67-111 (506)
436 PF09695 YtfJ_HI0045: Bacteria 83.6 5.9 0.00013 34.2 7.4 101 53-161 29-140 (160)
437 PRK12759 bifunctional gluaredo 83.6 2.3 4.9E-05 43.1 5.9 35 65-108 4-38 (410)
438 PRK12759 bifunctional gluaredo 83.4 2.3 4.9E-05 43.1 5.8 21 230-250 4-24 (410)
439 PRK10954 periplasmic protein d 83.3 1.2 2.6E-05 40.5 3.5 34 224-257 35-71 (207)
440 KOG0541 Alkyl hydroperoxide re 83.0 3.8 8.3E-05 35.1 6.0 101 218-330 34-151 (171)
441 PRK10954 periplasmic protein d 82.7 1.3 2.9E-05 40.2 3.5 40 60-102 36-78 (207)
442 KOG0541 Alkyl hydroperoxide re 82.5 4.5 9.7E-05 34.7 6.2 63 53-117 34-99 (171)
443 PF01216 Calsequestrin: Calseq 80.6 31 0.00067 33.7 11.8 89 227-362 52-145 (383)
444 KOG1672 ATP binding protein [P 80.2 2.9 6.3E-05 37.2 4.5 70 60-161 83-152 (211)
445 cd03031 GRX_GRX_like Glutaredo 80.1 18 0.00039 30.9 9.3 14 237-250 15-28 (147)
446 PF12760 Zn_Tnp_IS1595: Transp 79.0 1.6 3.4E-05 29.3 2.0 22 389-410 19-45 (46)
447 KOG4498 Uncharacterized conser 79.0 3.4 7.4E-05 36.5 4.5 55 47-103 35-91 (197)
448 PF07449 HyaE: Hydrogenase-1 e 78.7 2 4.3E-05 34.6 2.8 26 303-329 72-97 (107)
449 PHA00626 hypothetical protein 76.6 1.9 4.1E-05 30.0 1.8 23 390-412 2-33 (59)
450 PF10571 UPF0547: Uncharacteri 75.8 1.6 3.5E-05 25.5 1.1 23 390-412 2-24 (26)
451 PF07191 zinc-ribbons_6: zinc- 73.0 1 2.3E-05 33.0 -0.2 27 390-417 3-34 (70)
452 PRK11788 tetratricopeptide rep 72.5 5.3 0.00011 39.6 4.7 24 388-411 354-378 (389)
453 PF13848 Thioredoxin_6: Thiore 72.3 17 0.00037 31.6 7.5 64 61-151 94-160 (184)
454 cd03060 GST_N_Omega_like GST_N 72.2 22 0.00047 25.7 6.9 59 232-328 3-61 (71)
455 PF05768 DUF836: Glutaredoxin- 70.8 11 0.00025 28.4 5.2 56 65-150 2-57 (81)
456 KOG4286 Dystrophin-like protei 70.7 1.5 3.3E-05 46.3 0.3 30 388-417 603-634 (966)
457 COG4545 Glutaredoxin-related p 69.1 17 0.00038 27.1 5.4 72 66-159 5-76 (85)
458 KOG4236 Serine/threonine prote 66.9 1.1 2.5E-05 45.8 -1.4 38 385-422 275-315 (888)
459 cd02983 P5_C P5 family, C-term 66.7 15 0.00032 30.7 5.4 48 78-151 41-90 (130)
460 PF05176 ATP-synt_10: ATP10 pr 66.7 22 0.00047 33.4 7.1 120 34-161 93-232 (252)
461 TIGR00595 priA primosomal prot 66.6 28 0.0006 36.3 8.6 48 268-324 129-176 (505)
462 KOG3170 Conserved phosducin-li 64.9 6.8 0.00015 35.1 3.1 76 12-93 67-143 (240)
463 KOG4301 Beta-dystrobrevin [Cyt 64.9 2.5 5.4E-05 40.7 0.4 70 350-421 203-275 (434)
464 PHA03075 glutaredoxin-like pro 64.7 7.3 0.00016 31.6 3.0 30 227-256 2-31 (123)
465 KOG3170 Conserved phosducin-li 63.7 51 0.0011 29.7 8.2 68 226-331 111-178 (240)
466 cd03073 PDI_b'_ERp72_ERp57 PDI 62.2 40 0.00086 27.2 7.0 48 77-151 34-86 (111)
467 cd03031 GRX_GRX_like Glutaredo 62.0 21 0.00045 30.6 5.6 28 72-108 15-42 (147)
468 PF13743 Thioredoxin_5: Thiore 61.4 14 0.00031 32.5 4.6 27 232-258 2-28 (176)
469 COG1651 DsbG Protein-disulfide 61.1 19 0.00041 33.3 5.7 44 212-256 71-114 (244)
470 KOG0696 Serine/threonine prote 60.6 2.1 4.6E-05 42.6 -0.8 38 384-421 117-157 (683)
471 COG2761 FrnE Predicted dithiol 60.3 26 0.00057 32.2 6.2 37 64-101 7-43 (225)
472 COG1651 DsbG Protein-disulfide 60.1 20 0.00044 33.1 5.7 47 47-93 70-116 (244)
473 PRK12496 hypothetical protein; 59.9 5.7 0.00012 34.7 1.8 24 389-412 128-153 (164)
474 cd02978 KaiB_like KaiB-like fa 58.8 40 0.00086 25.1 5.8 63 228-322 2-64 (72)
475 PF13909 zf-H2C2_5: C2H2-type 57.7 5.6 0.00012 22.3 0.9 10 403-412 1-10 (24)
476 PF13911 AhpC-TSA_2: AhpC/TSA 57.6 17 0.00037 29.2 4.2 54 83-141 2-55 (115)
477 cd02977 ArsC_family Arsenate R 57.5 13 0.00029 29.4 3.5 20 66-85 2-21 (105)
478 PF07449 HyaE: Hydrogenase-1 e 57.5 27 0.00059 28.1 5.2 25 132-160 72-96 (107)
479 PHA03075 glutaredoxin-like pro 57.0 16 0.00034 29.7 3.6 29 62-90 2-30 (123)
480 PF10058 DUF2296: Predicted in 56.0 20 0.00043 25.0 3.6 25 386-410 20-52 (54)
481 PF08790 zf-LYAR: LYAR-type C2 55.8 8.4 0.00018 22.9 1.4 20 403-422 1-27 (28)
482 COG0525 ValS Valyl-tRNA synthe 54.9 21 0.00045 39.4 5.3 54 312-376 286-339 (877)
483 COG3019 Predicted metal-bindin 54.6 1.3E+02 0.0029 25.4 9.0 83 230-375 28-113 (149)
484 TIGR01617 arsC_related transcr 53.6 28 0.0006 28.3 4.8 33 66-107 2-34 (117)
485 PF13778 DUF4174: Domain of un 53.0 93 0.002 25.4 7.8 89 56-161 3-94 (118)
486 PRK14890 putative Zn-ribbon RN 52.6 8 0.00017 27.4 1.2 24 387-410 24-56 (59)
487 cd03035 ArsC_Yffb Arsenate Red 52.5 26 0.00057 28.0 4.4 19 66-84 2-20 (105)
488 cd03036 ArsC_like Arsenate Red 52.3 13 0.00028 30.0 2.6 33 66-107 2-34 (111)
489 KOG4236 Serine/threonine prote 51.9 2.4 5.2E-05 43.6 -2.1 45 372-419 143-190 (888)
490 PF01323 DSBA: DSBA-like thior 51.7 31 0.00067 30.3 5.3 28 229-256 1-28 (193)
491 KOG2603 Oligosaccharyltransfer 51.6 55 0.0012 31.5 6.9 71 59-151 58-135 (331)
492 cd03060 GST_N_Omega_like GST_N 51.0 39 0.00085 24.3 4.9 31 67-104 3-33 (71)
493 PRK01655 spxA transcriptional 49.5 33 0.00072 28.6 4.7 45 65-118 2-49 (131)
494 PLN03098 LPA1 LOW PSII ACCUMUL 49.1 1.8E+02 0.0038 29.8 10.4 107 49-161 284-427 (453)
495 TIGR02742 TrbC_Ftype type-F co 48.6 1.1E+02 0.0023 25.7 7.5 23 301-323 59-81 (130)
496 cd03032 ArsC_Spx Arsenate Redu 48.3 43 0.00094 27.1 5.2 43 66-117 3-48 (115)
497 PLN03098 LPA1 LOW PSII ACCUMUL 47.7 3.1E+02 0.0067 28.1 11.9 108 214-332 285-430 (453)
498 PF03604 DNA_RNApol_7kD: DNA d 47.6 8.5 0.00018 23.7 0.6 24 389-412 1-27 (32)
499 PRK09301 circadian clock prote 47.5 69 0.0015 25.6 5.8 67 225-323 4-70 (103)
500 PF13240 zinc_ribbon_2: zinc-r 47.2 11 0.00024 21.2 1.0 22 391-412 2-23 (23)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=4.4e-24 Score=181.13 Aligned_cols=131 Identities=52% Similarity=0.986 Sum_probs=120.9
Q ss_pred CccccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCcee
Q 014225 44 DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAV 123 (428)
Q Consensus 44 dfl~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~ 123 (428)
|||.+.+|+.+++++++||+|+|+||++||++|+.++|.|+++++++++.+.++++++|++|.+.+.+++++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 57889999999999999999999999999999999999999999999876445999999999999999999999999888
Q ss_pred ccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCcccc
Q 014225 124 PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 177 (428)
Q Consensus 124 ~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~ 177 (428)
++.+.+....+++.|++.++|+++|||+ +|+++.+++.+++..++..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence 8866455578999999999999999999 99999999999999999988886
No 2
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=4.6e-24 Score=180.99 Aligned_cols=130 Identities=51% Similarity=1.004 Sum_probs=118.7
Q ss_pred CcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHH
Q 014225 208 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 287 (428)
Q Consensus 208 ~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~ 287 (428)
+|..+.+|+ .+++++++||+|+|+||++||++|+.++|.|.+++++++++ +.+++|++|++|.+.+++++++
T Consensus 1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~ 72 (131)
T cd03009 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF 72 (131)
T ss_pred CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence 354588999 99999999999999999999999999999999999999865 4579999999999999999999
Q ss_pred hcCCccccccCC-cchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCC
Q 014225 288 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 345 (428)
Q Consensus 288 ~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 345 (428)
+.++|..+|+.. +....+++.|++.++|+++|||++|+++.++++.++..+|+.+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999988888765 5567899999999999999999999999999999999999999997
No 3
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=1.9e-23 Score=178.23 Aligned_cols=120 Identities=30% Similarity=0.577 Sum_probs=106.0
Q ss_pred EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcC-----CCcEEEEEEecCCChHHHHHHHhcCC--Cceecc
Q 014225 53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNAFNNYRACMP--WLAVPY 125 (428)
Q Consensus 53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~ii~vs~D~~~~~~~~~~~~~~--~~~~~~ 125 (428)
.+++++++||+|+|+|||+||+||+.++|.|.++|++++++ ..++++|+|+.|.+.+.+++|+++++ |+.+|+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~ 96 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPF 96 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecc
Confidence 45678999999999999999999999999999999998763 23599999999999888999999987 878887
Q ss_pred CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccc
Q 014225 126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFP 176 (428)
Q Consensus 126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p 176 (428)
.+. ....+.+.|++.++|+++|||+ +|+++.+++++.|..+|..+|.
T Consensus 97 ~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~~ 143 (146)
T cd03008 97 EDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACFR 143 (146)
T ss_pred cch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHHH
Confidence 553 2368999999999999999999 9999999999999998876653
No 4
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=1.7e-23 Score=178.55 Aligned_cols=123 Identities=28% Similarity=0.530 Sum_probs=105.0
Q ss_pred eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCC--cccc
Q 014225 218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL 295 (428)
Q Consensus 218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~--~~~~ 295 (428)
.+++++++||+|+|+|||+|||+|++++|.|.+++++++++.. -....+++||+|+.|.+.+++++|+++++ |+.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~--~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFY--VDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcc--cccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 5678899999999999999999999999999999998875300 00023699999999998888999999988 7777
Q ss_pred ccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccC
Q 014225 296 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENA 342 (428)
Q Consensus 296 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~ 342 (428)
|+..+....+++.|++.++|++||||++|+|+.++++..|..+|..+
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 87776667899999999999999999999999999988877776544
No 5
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=2.5e-22 Score=170.56 Aligned_cols=128 Identities=48% Similarity=0.883 Sum_probs=112.1
Q ss_pred cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC-CCceec
Q 014225 46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM-PWLAVP 124 (428)
Q Consensus 46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~-~~~~~~ 124 (428)
|+|.+ +++++++++||+++|+||++||++|+.++|.|+++++++++.+.++++++|++|.+.+.+++|++++ +|..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 45555 5899999999999999999999999999999999999998763349999999999999999999999 688888
Q ss_pred cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhh-cccCcccc
Q 014225 125 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK-YGIRAFPF 177 (428)
Q Consensus 125 ~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~-~g~~~~p~ 177 (428)
+.+......+.+.|++.++|+++|||+ +|+++.+++.+.+.. ++..+|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence 766444478889999999999999999 999999999877665 88888886
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=2.4e-22 Score=170.73 Aligned_cols=128 Identities=50% Similarity=0.952 Sum_probs=111.5
Q ss_pred cccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHh
Q 014225 209 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 288 (428)
Q Consensus 209 f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~ 288 (428)
|.+|.+ + .+++++++||+++|+||++||++|+.++|.|+++++++++. ..+++|++|++|.+.+++++|++
T Consensus 2 ~~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 2 FLLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred ccccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHh
Confidence 334555 5 89999999999999999999999999999999999999764 34799999999999999999999
Q ss_pred cC-CccccccCC-cchhHHHHhcCcCccceEEEECCCCcEEeccccchhhc-ccccCCCC
Q 014225 289 TM-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF 345 (428)
Q Consensus 289 ~~-~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~p~ 345 (428)
++ +|..+++.. +....+.+.|+|.++|+++|||++|+|+.+++...+.. +|+.+||+
T Consensus 73 ~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 73 EMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 98 577777654 24567888999999999999999999999999988866 89988886
No 7
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.84 E-value=1.7e-20 Score=162.14 Aligned_cols=119 Identities=29% Similarity=0.470 Sum_probs=106.9
Q ss_pred hccCCCCccc-C--CCCCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 202 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 202 ~g~~~p~f~l-~--~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
.|.++|+|.+ + .+|+ .+++++++||+++|+||++ |||+|..++|.|.+++++|+++ ++.+++|+++
T Consensus 2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD 71 (146)
T ss_dssp TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence 4889999998 6 9999 9999999999999999999 9999999999999999999876 8999999999
Q ss_pred CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC---------ccceEEEECCCCcEEecccc
Q 014225 278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 332 (428)
.+.. ..+++.+.+ .++|+..|....+.+.|++. ++|+++|||++|+|++.+.+
T Consensus 72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 7766 888888855 78888888899999999988 99999999999999998654
No 8
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.83 E-value=8.5e-20 Score=162.07 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=125.2
Q ss_pred ccCCCCccc-CCCCCceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225 203 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 278 (428)
Q Consensus 203 g~~~p~f~l-~~~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-- 278 (428)
|..+|+|.+ +.+|+ .++++++ +|+++||+||++|||.|..+++.|.+++++|+++ ++.+++|++|.
T Consensus 1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE 70 (171)
T ss_pred CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence 567899999 99999 9999998 8899999999999999999999999999999865 79999999985
Q ss_pred -----CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHH
Q 014225 279 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 353 (428)
Q Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L 353 (428)
+.+++++++.+.+ +.+|++.|....+.+.|++..+|+++|||++|+|++....+. ..+. ........+|
T Consensus 71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~ 144 (171)
T cd02969 71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDL 144 (171)
T ss_pred cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHH
Confidence 5788999999877 568888898899999999999999999999999998754321 1110 0123445778
Q ss_pred HHHHHHHHhcCCCCcc
Q 014225 354 EKQMEEEAKNLPRSEF 369 (428)
Q Consensus 354 ~~~l~~~~~~~~~~~~ 369 (428)
.++|++++.+......
T Consensus 145 ~~~i~~~l~~~~~~~~ 160 (171)
T cd02969 145 RAALDALLAGKPVPVP 160 (171)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 8999988887655433
No 9
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.82 E-value=8.7e-20 Score=163.94 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=99.5
Q ss_pred hhccCCCCccc-CCCC--Cceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225 201 LLTNHDRGYLL-GHPP--DEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g--~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~ 276 (428)
..|.++|+|++ +.+| + .++++++ +||+++|+||++||++|++++|.|.++.+ + +++|++|+.
T Consensus 40 ~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~~ 105 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMNY 105 (185)
T ss_pred hcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence 46889999999 8874 5 6666665 79999999999999999999999987743 3 589999999
Q ss_pred CCCHHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 277 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
+.+.++..+|+.+++ +.+| +..|....+.+.|++.++|++||||++|+|++++.+
T Consensus 106 ~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 106 KDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred CCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 888888999998876 4565 356777889999999999999999999999998654
No 10
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.82 E-value=8.4e-20 Score=168.15 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=108.1
Q ss_pred hhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225 200 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 277 (428)
Q Consensus 200 ~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d- 277 (428)
...|..+|+|++ +.+|+ .+++++++||+|||+||++||++|..++|.|++++++|+++ +++||+|++|
T Consensus 73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~ 142 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ 142 (236)
T ss_pred hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence 346889999999 99999 99999999999999999999999999999999999999876 8999999985
Q ss_pred ------CCHHHHHHHHh-cCCccccccCC--cchh-HHHHhcC-------------cCccceEEEECCCCcEEeccccch
Q 014225 278 ------RDQTSFESYFG-TMPWLALPFGD--PTIK-ELTKYFD-------------VQGIPCLVIIGPEGKTVTKQGRNL 334 (428)
Q Consensus 278 ------~~~~~~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~ 334 (428)
.+.++.++|+. +++ +.||+.. |.++ .+...|+ +...|++||||++|+|+.++.+.
T Consensus 143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~- 220 (236)
T PLN02399 143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT- 220 (236)
T ss_pred ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC-
Confidence 35567888874 444 6788763 3222 2322222 35579999999999999986542
Q ss_pred hhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225 335 INLYQENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 335 ~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
.++ ++|++.|+++|+
T Consensus 221 ----------~~~---~~le~~I~~lL~ 235 (236)
T PLN02399 221 ----------TSP---FQIEKDIQKLLA 235 (236)
T ss_pred ----------CCH---HHHHHHHHHHhc
Confidence 222 456666776664
No 11
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.82 E-value=6.1e-20 Score=153.81 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=107.4
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
+|+++|+|++ +.+|+ .+++++++||+++|.||++ |||+|...++.|++++++|+++ ++.+++|+.| +
T Consensus 1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d-~ 69 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTD-D 69 (124)
T ss_dssp TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS-S
T ss_pred CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccc-c
Confidence 5899999999 99999 9999999999999999998 9999999999999999999976 8999999997 5
Q ss_pred HHHHHHHHhcCCccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEec
Q 014225 280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~ 329 (428)
.++.+++.+..+ +++|+..|....+.+.|++. .+|++||||++|+|+++
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 568888888776 88899999999999999998 99999999999999874
No 12
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.82 E-value=6.6e-20 Score=154.75 Aligned_cols=123 Identities=46% Similarity=0.809 Sum_probs=113.9
Q ss_pred cccCCCCEEecc-cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc--CCCce
Q 014225 46 LLNQHGTQVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC--MPWLA 122 (428)
Q Consensus 46 l~~~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~--~~~~~ 122 (428)
|...+|..+..+ .+.||+|.++|.|.||+||+.+.|.|+++|+++++++..++||+||.|++.+++.+|+.. +.|++
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 778889888887 689999999999999999999999999999999999889999999999999999999995 67999
Q ss_pred eccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhccc
Q 014225 123 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 172 (428)
Q Consensus 123 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~ 172 (428)
+||.+... +++.+.|.+.++|+++++.+ +|+++..+++..+..++.
T Consensus 97 iPf~d~~~-~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLI-QKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHH-HHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence 99976554 99999999999999999999 999999999998877764
No 13
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.81 E-value=1.6e-19 Score=149.14 Aligned_cols=110 Identities=22% Similarity=0.376 Sum_probs=96.3
Q ss_pred CCccc-CCCCCceecccccC-CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHH
Q 014225 207 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 284 (428)
Q Consensus 207 p~f~l-~~~g~~~v~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~ 284 (428)
|+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.|+++++.+.+ ++.++.++ +.+.++++
T Consensus 1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~ 68 (114)
T cd02967 1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ 68 (114)
T ss_pred CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence 68999 99999 99999997 99999999999999999999999999887753 47888776 66788999
Q ss_pred HHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 285 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 285 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++++++...+|+..+ ..+.+.|++..+|++||||++|+|++++
T Consensus 69 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 9999888656776653 5688999999999999999999999874
No 14
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.81 E-value=1.6e-19 Score=163.56 Aligned_cols=138 Identities=18% Similarity=0.176 Sum_probs=106.9
Q ss_pred hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC--
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 277 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-- 277 (428)
..+..+|+|++ +.+|+ .+++++++||+|||+|||+|||+|.+++|.|++++++|+++ +++||+|+++
T Consensus 14 ~~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~ 83 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQF 83 (199)
T ss_pred hcCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhc
Confidence 34778999999 99999 99999999999999999999999999999999999999876 8999999974
Q ss_pred -----CCHHHHHHHHhcCCccccccCCcc------hhH--------HHHhcCcC----cc---ceEEEECCCCcEEeccc
Q 014225 278 -----RDQTSFESYFGTMPWLALPFGDPT------IKE--------LTKYFDVQ----GI---PCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 278 -----~~~~~~~~~~~~~~~~~~~~~~d~------~~~--------~~~~~~v~----~~---P~~~lid~~G~i~~~~~ 331 (428)
.+.+++++|+++.+ ++||+..|. ... +...|++. .+ |++||||++|+|+.++.
T Consensus 84 ~~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 84 LNQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred cCCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 35678999998776 677775431 111 22334432 22 37999999999998865
Q ss_pred cchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225 332 RNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 363 (428)
Q Consensus 332 ~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~ 363 (428)
+.. .. ++|++.|+++++.
T Consensus 163 g~~-----------~~---~~l~~~I~~ll~~ 180 (199)
T PTZ00056 163 PRT-----------EP---LELEKKIAELLGV 180 (199)
T ss_pred CCC-----------CH---HHHHHHHHHHHHH
Confidence 421 22 4566667776653
No 15
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=152.27 Aligned_cols=124 Identities=47% Similarity=0.861 Sum_probs=113.4
Q ss_pred ccc-CCCCCceeccc-ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHH
Q 014225 209 YLL-GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 286 (428)
Q Consensus 209 f~l-~~~g~~~v~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~ 286 (428)
..+ ..+|. .+..+ .+.||+|+++|.|.|||+|+.+.|.|.++|++.+++ +..++||+||.|.+.+++..|
T Consensus 15 ~~l~~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y 86 (157)
T KOG2501|consen 15 NRLRKQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEY 86 (157)
T ss_pred CeeeccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHH
Confidence 344 77777 66666 689999999999999999999999999999999887 568999999999999999999
Q ss_pred Hhc--CCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccc
Q 014225 287 FGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE 340 (428)
Q Consensus 287 ~~~--~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 340 (428)
+.. .+|+.+|+.++..+++.+.|+|.++|++++++++|+++..+++.++..+|+
T Consensus 87 ~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 87 MLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred HHhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 995 569999999999999999999999999999999999999999999988874
No 16
>PLN02412 probable glutathione peroxidase
Probab=99.81 E-value=1.5e-19 Score=159.51 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=104.4
Q ss_pred cCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC----
Q 014225 204 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 278 (428)
Q Consensus 204 ~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~---- 278 (428)
..+|+|++ +.+|+ .+++++++||++||+||++|||+|..++|.|++++++|+++ ++.|++|++|.
T Consensus 7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence 56899999 99999 99999999999999999999999999999999999999977 89999999862
Q ss_pred ---CHHHHHHHH-hcCCccccccCCc--ch-hHHHHhcC-------------cCccceEEEECCCCcEEeccccchhhcc
Q 014225 279 ---DQTSFESYF-GTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQGRNLINLY 338 (428)
Q Consensus 279 ---~~~~~~~~~-~~~~~~~~~~~~d--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~~~~~ 338 (428)
+.++..+++ .+++ ++||+..+ .+ ...+..|+ +...|++||||++|+|+.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~----- 150 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPT----- 150 (167)
T ss_pred CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCC-----
Confidence 445666665 4444 78888652 22 23333332 66789999999999999986542
Q ss_pred cccCCCCChHHHHHHHHHHHHHHh
Q 014225 339 QENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 339 g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
.++ ++|.+.|+++++
T Consensus 151 ------~~~---~~l~~~i~~~l~ 165 (167)
T PLN02412 151 ------TSP---LKIEKDIQNLLG 165 (167)
T ss_pred ------CCH---HHHHHHHHHHHh
Confidence 222 456666766654
No 17
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=4e-19 Score=157.93 Aligned_cols=121 Identities=25% Similarity=0.471 Sum_probs=111.1
Q ss_pred hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
..|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+...+.|.++++++++. ++.+++|++|.+
T Consensus 36 ~~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~ 105 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDET 105 (173)
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCC
Confidence 36889999999 99999 99999999999999999999999999999999999999865 799999999999
Q ss_pred HHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
.+.++.+.++++ +++|+..|....+.+.|++..+|++++||++|+++....+
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g 157 (173)
T PRK03147 106 ELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITG 157 (173)
T ss_pred HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeC
Confidence 899999998877 6788888888999999999999999999999999977543
No 18
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.81 E-value=2.2e-19 Score=151.35 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=99.9
Q ss_pred CCCCccc-CCCC--CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225 205 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 281 (428)
Q Consensus 205 ~~p~f~l-~~~g--~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~ 281 (428)
++|+|++ +.+| . .+++++++||+++|+||++|||+|++++|.|+++.+++ +++|++|+.+.+.+
T Consensus 2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence 5799999 8888 7 89999999999999999999999999999999887653 38999999988899
Q ss_pred HHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
++++|+.+......++..|....+++.|++.++|++++||++|+++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 69 NALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred HHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEec
Confidence 999999887743234556777899999999999999999999999988544
No 19
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.80 E-value=3e-19 Score=147.43 Aligned_cols=111 Identities=19% Similarity=0.330 Sum_probs=94.7
Q ss_pred cCc-cccCCCCEEecccCC-CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCC
Q 014225 43 RDY-LLNQHGTQVKVSDLE-GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW 120 (428)
Q Consensus 43 pdf-l~~~~G~~v~l~~~~-gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~ 120 (428)
|+| +.+.+|+.+++++++ ||+++|+||++||++|+.++|.|+++++++++. +.++.++ |.+.+..+++++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCC
Confidence 688 999999999999997 999999999999999999999999999987543 7888775 7777889999998876
Q ss_pred ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccc
Q 014225 121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 121 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~ 163 (428)
..+|... + ..+.+.|++..+|++++||+ +|+++++.+
T Consensus 77 ~~~p~~~-~--~~~~~~~~~~~~P~~~vid~---~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVL-S--AELGMAYQVSKLPYAVLLDE---AGVIAAKGL 113 (114)
T ss_pred CCCcEEe-c--HHHHhhcCCCCcCeEEEECC---CCeEEeccc
Confidence 4444322 2 56889999999999999999 999988754
No 20
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.80 E-value=2e-19 Score=155.41 Aligned_cols=118 Identities=27% Similarity=0.449 Sum_probs=100.4
Q ss_pred ccccccCc-ccc--CCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225 38 LASKDRDY-LLN--QHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 113 (428)
Q Consensus 38 ~g~~~pdf-l~~--~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~ 113 (428)
+|+.+|+| +.+ .+|+++++++++||+++|+||++ |||+|+.++|.|.++++++++.+ +.+++|+.+.+.. ..+
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHH
Confidence 58999999 855 99999999999999999999999 99999999999999999999987 9999999988877 888
Q ss_pred HHhcCCCceeccCChHHHHHHHhhcCCC---------CCceEEEEcCCCCCCCcccccc
Q 014225 114 YRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~dG~i~~~~~ 163 (428)
++++.+....-..|.+ ..+.+.|++. ++|++++||+ +|+|++...
T Consensus 79 ~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~~~~ 132 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPD--GALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVYRHV 132 (146)
T ss_dssp HHHHTTTTSEEEEETT--SHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEEEEE
T ss_pred HHHhhCCCceEEechH--HHHHHHhCCccccccccCCeecEEEEEEC---CCEEEEEEe
Confidence 8887653222222433 7999999988 9999999999 999987743
No 21
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=4.3e-19 Score=141.60 Aligned_cols=93 Identities=45% Similarity=0.924 Sum_probs=84.3
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC--CccccccCCcchh
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK 303 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~--~~~~~~~~~d~~~ 303 (428)
||+++|+||++||++|++++|.|.+++++|++. .++++|+|++|.+.++++++++.. +|..+++..+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~--------~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK--------DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--------CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 799999999999999999999999999999822 379999999999999999999988 7999999988889
Q ss_pred HHHHhcCcCccceEEEECCCCcE
Q 014225 304 ELTKYFDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 304 ~~~~~~~v~~~P~~~lid~~G~i 326 (428)
.+.+.|++.++|+++|+|++|+|
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999999987
No 22
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.80 E-value=7.7e-19 Score=177.98 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=105.4
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC---
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 277 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d--- 277 (428)
.+.++|+|.+ |.+|+ .+.++ +||+|||+|||+||++|+.++|.|++++++++.. ++.||+|+++
T Consensus 34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence 3568999999 99999 88887 8999999999999999999999999999998754 7899999873
Q ss_pred --CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 278 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 278 --~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
.+.+++++++..+++.++|+..|....+++.|+|.++|+++|||++|+|+.+..+
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence 3456788888888777889999999999999999999999999999999988544
No 23
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.80 E-value=4e-19 Score=156.91 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=103.8
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
+|.++|+|++ +.+|+ .+++++++||+++|+||++| ||+|..++|.|+++++++. +++|++||.| +
T Consensus 20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D-~ 86 (167)
T PRK00522 20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISAD-L 86 (167)
T ss_pred CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCC-C
Confidence 5899999999 99999 99999999999999999999 9999999999999988873 5899999998 4
Q ss_pred HHHHHHHHhcCCccccccCCc-chhHHHHhcCcCccc---------eEEEECCCCcEEecccc
Q 014225 280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~ 332 (428)
....++|.++.+...++++.| ....+++.||+...| ++||||++|+|++.+.+
T Consensus 87 ~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 87 PFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred HHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEEC
Confidence 566788888877444788888 456999999998777 99999999999998743
No 24
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.79 E-value=2.7e-19 Score=150.60 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=96.3
Q ss_pred CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-----CCHHHHHHHHhc
Q 014225 215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT 289 (428)
Q Consensus 215 g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-----~~~~~~~~~~~~ 289 (428)
|+ .+++++++||++||+||++||++|.+++|.|++++++|+++ ++.+++|+.+ .+.+++++++++
T Consensus 13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence 45 89999999999999999999999999999999999999866 7999999863 467889999988
Q ss_pred CCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225 290 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 290 ~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
.+ +++|+..|....+.+.|++.++|+++|||++|+|+++..
T Consensus 83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 77 679999999999999999999999999999999999854
No 25
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.79 E-value=1.1e-18 Score=139.27 Aligned_cols=93 Identities=39% Similarity=0.755 Sum_probs=82.2
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC--CCceeccCChHHHHHHHhhc
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM--PWLAVPYSDLETKKALNRKF 138 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~ 138 (428)
||+++|+||++||++|++++|.|+++++++++ +.++++|+|+.|.+.+.++++++++ +|..+++.+.. ...+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHC
Confidence 79999999999999999999999999999995 3459999999999999999999988 89999985544 48999999
Q ss_pred CCCCCceEEEEcCCCCCCCc
Q 014225 139 DIEGIPCLVVLQPYDDKDDA 158 (428)
Q Consensus 139 ~v~~~P~~~lid~~~~dG~i 158 (428)
++.++|+++|+|+ +|+|
T Consensus 79 ~i~~iP~~~lld~---~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDP---DGKI 95 (95)
T ss_dssp T-TSSSEEEEEET---TSBE
T ss_pred CCCcCCEEEEECC---CCCC
Confidence 9999999999999 9975
No 26
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-18 Score=148.61 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=108.8
Q ss_pred hhccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~ 278 (428)
.+|.++|||++ +.+|+ .++|++++||+|||+|| ..++|.|..++..+++.+.+|... +.+|++||.|
T Consensus 5 ~~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~D- 73 (157)
T COG1225 5 KVGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPD- 73 (157)
T ss_pred CCCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCC-
Confidence 36999999999 99999 99999999999999999 479999999999999999999977 8999999999
Q ss_pred CHHHHHHHHhcCCccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEecc
Q 014225 279 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~ 330 (428)
+....++|..+.+ ++|+.+.|...++++.|||- ..+++||||++|+|++..
T Consensus 74 s~~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 74 SPKSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CHHHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 7788999999888 77999999999999999982 357899999999999976
No 27
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.79 E-value=1e-18 Score=155.37 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=98.5
Q ss_pred hhccCCCCccc-CCCCC-ceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 201 LLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~-~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
.+|.++|+|++ +.+|+ ..++++++ +||+++|+||++||++|++++|.++++++ + ++++++|+.+
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~~ 101 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDYK 101 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEECC
Confidence 56899999999 88886 13444565 68999999999999999999999887653 2 5899999998
Q ss_pred CCHHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 278 RDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
.+.++..+|+++++ +.|+ +..|....+.+.|++.++|++++||++|+|++++.+
T Consensus 102 ~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 102 DQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred CChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence 77788888988876 4565 456777899999999999999999999999998654
No 28
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.79 E-value=3.2e-19 Score=155.25 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=95.7
Q ss_pred CCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC------
Q 014225 206 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 278 (428)
Q Consensus 206 ~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~------ 278 (428)
.|+|++ +.+|+ .+++++++||+|+|+||++||| |..++|.|++++++|+++ ++.|++|++|.
T Consensus 2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence 589999 99999 9999999999999999999999 999999999999999866 79999999752
Q ss_pred -CHHHHHHHHhc-CCccccccCCcc--hhH-HHHhcC--cCccc-----------eEEEECCCCcEEecccc
Q 014225 279 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 279 -~~~~~~~~~~~-~~~~~~~~~~d~--~~~-~~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~ 332 (428)
+.++.++|+++ .+ ++||+..|. ... ....|+ +.++| ++||||++|+|+.+..+
T Consensus 71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 45788999986 45 678887642 222 345555 45666 79999999999998655
No 29
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.79 E-value=1.2e-18 Score=154.92 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=101.9
Q ss_pred hccCCCCccc-CCCC----CceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225 202 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g----~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is 275 (428)
+|.++|+|.+ +.+| + .+++++++||++||+|| ++||++|..+++.|++++++|.+. ++.|++||
T Consensus 1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS 70 (173)
T ss_pred CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence 4889999999 7777 6 89999999999999999 799999999999999999999876 89999999
Q ss_pred cCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225 276 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 276 ~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 331 (428)
+|.. ...+++.+.. .-++|++..|....+++.||+. .+|++||||++|+|++++.
T Consensus 71 ~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 71 TDSH-FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred cCCH-HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 9853 3334444432 2367899999999999999986 6789999999999999863
No 30
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.78 E-value=1.2e-18 Score=152.06 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=105.8
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
+|.++|+|++ +.+|+ .+++++++||++||+||++ ||+.|..+++.|.+++++++++ ++++|+|+.| +
T Consensus 6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d-~ 74 (154)
T PRK09437 6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTD-K 74 (154)
T ss_pred CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-C
Confidence 5889999999 99999 9999999999999999986 7889999999999999999876 7999999998 5
Q ss_pred HHHHHHHHhcCCccccccCCcchhHHHHhcCcCcc------------ceEEEECCCCcEEeccc
Q 014225 280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~------------P~~~lid~~G~i~~~~~ 331 (428)
.+++++|.++++ ++||++.|....+.+.||+... |++||||++|+|+..+.
T Consensus 75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 688889998876 6788888888899999998654 77899999999999864
No 31
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.78 E-value=8.6e-19 Score=150.85 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=104.1
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
+|.++|+|++ +.+|+ .+++++++||++||+||++| |++|+.++|.|.+++++++ ++.|++|++|.
T Consensus 2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence 4889999999 99999 99999999999999999988 6999999999999998873 58999999985
Q ss_pred HHHHHHHHhcCCccccccCCcch-hHHHHhcCcCc------cceEEEECCCCcEEecccc
Q 014225 280 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~ 332 (428)
....+++..+.+...+++..|.. ..+++.||+.. .|++||||++|+|+..+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 56778888887766788888875 89999999863 7999999999999998643
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.78 E-value=3.4e-18 Score=154.06 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=95.5
Q ss_pred hhccCCCCccc-CCCCCceeccc--ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
.+|..+|+|++ +.+|+ .++++ +++||+++|+||++|||+|++++|.+.++++++ ++.+++|+.|
T Consensus 47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is~~ 113 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMISDG 113 (189)
T ss_pred CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEeCC
Confidence 46899999999 99999 99995 579999999999999999999999999887543 4678888854
Q ss_pred CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+.++.++|+++++. .++... ...++.+.|++..+|++|+||++|+|++++
T Consensus 114 -~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 114 -TPAEHRRFLKDHEL-GGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred -CHHHHHHHHHhcCC-Ccceee-chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 67888999988763 333221 357889999999999999999999999863
No 33
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.77 E-value=1.8e-18 Score=148.20 Aligned_cols=116 Identities=26% Similarity=0.332 Sum_probs=105.5
Q ss_pred CCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHH
Q 014225 205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 282 (428)
Q Consensus 205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~ 282 (428)
++|+|.+ +.+|+ .+++++++||+++|+|| ++|||+|..+++.|.++++++++. +++||+|++| +.+.
T Consensus 2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPD-SVES 70 (140)
T ss_pred CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence 5799999 99999 99999999999999999 589999999999999999999876 7999999998 5678
Q ss_pred HHHHHhcCCccccccCCcchhHHHHhcCcCcc---------ceEEEECCCCcEEecccc
Q 014225 283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~ 332 (428)
+.+|.++.+ +.+|++.|....+.+.||+... |+++|||++|+|++.+.+
T Consensus 71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g 128 (140)
T cd03017 71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRK 128 (140)
T ss_pred HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEec
Confidence 889998877 5788988988999999999988 999999999999998644
No 34
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.77 E-value=1e-18 Score=146.31 Aligned_cols=115 Identities=25% Similarity=0.501 Sum_probs=99.9
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 115 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~ 115 (428)
+|+++|+| +.+.+|+.+++++++||+++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.|... ..+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~-~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPE-EIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHH-HHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccccc-chhhhh
Confidence 58999999 99999999999999999999999999 99999999999999999999887 999999996655 678888
Q ss_pred hcCCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccc
Q 014225 116 ACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 116 ~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~ 160 (428)
+.+++....+.|.+ ..+.+.|++. .+|+++|||+ +|+|++
T Consensus 78 ~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~---~g~I~~ 123 (124)
T PF00578_consen 78 EEYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDP---DGKIRY 123 (124)
T ss_dssp HHHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEET---TSBEEE
T ss_pred hhhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECC---CCEEEe
Confidence 86653222233433 7999999998 9999999999 999875
No 35
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.77 E-value=3.5e-18 Score=153.22 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=94.4
Q ss_pred ccCCCCccc-CCCCCceecccccCCcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225 203 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 278 (428)
Q Consensus 203 g~~~p~f~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-- 278 (428)
+...|+|++ +.+|+ .+++++++||++ ++.|||+|||+|..++|.|++++++|+++ ++.|++|++|.
T Consensus 17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM 86 (183)
T ss_pred CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence 567899999 99999 999999999964 56679999999999999999999999876 79999999752
Q ss_pred -----CHHHHHHHHhcCCccccccCCc--chh----HHH------------HhcCcCccce---EEEECCCCcEEecccc
Q 014225 279 -----DQTSFESYFGTMPWLALPFGDP--TIK----ELT------------KYFDVQGIPC---LVIIGPEGKTVTKQGR 332 (428)
Q Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~d--~~~----~~~------------~~~~v~~~P~---~~lid~~G~i~~~~~~ 332 (428)
+.++..+|+.+...++||+..| .+. .+. ..+++.++|+ +||||++|+|+.++.+
T Consensus 87 ~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g 166 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSP 166 (183)
T ss_pred ccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECC
Confidence 3467888876332367887644 222 222 1236778994 6999999999998654
No 36
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.76 E-value=5.2e-18 Score=146.92 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=105.1
Q ss_pred hccCCCCccc-CCCCCceecccccCC-cEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~ 278 (428)
+|..+|+|.+ +.+|+ .+++++++| |+++|.|| ++||++|...+|.|++++++++++ ++.+++|+.|
T Consensus 3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d- 71 (149)
T cd03018 3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVD- 71 (149)
T ss_pred CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCC-
Confidence 5889999999 99999 999999999 99999888 899999999999999999999866 7999999988
Q ss_pred CHHHHHHHHhcCCccccccCCcch--hHHHHhcCcCc----c--ceEEEECCCCcEEecccc
Q 014225 279 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQG----I--PCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~----~--P~~~lid~~G~i~~~~~~ 332 (428)
+.+..++|.++++ +.||+..|.. ..+.+.|++.. + |+++|||++|+|++.+.+
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 72 SPFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred CHHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 5667888888876 6888888876 88999999973 3 489999999999998654
No 37
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=1.9e-17 Score=152.37 Aligned_cols=178 Identities=14% Similarity=0.131 Sum_probs=113.8
Q ss_pred CCCCEEEEEEec---CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 59 LEGKVTALYFSA---NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 59 ~~gk~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+++...++.|++ +||++|+...|.++++.+++.. +++..+++|.+.. ..++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~----------------------~~l~ 70 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED----------------------KEEA 70 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc----------------------HHHH
Confidence 444555666777 9999999999999999999832 5666666665433 7899
Q ss_pred hhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCC
Q 014225 136 RKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 215 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g 215 (428)
+.|+|.++||+++++ +|+.+.....+ .+........+...... . + +.-.++...
T Consensus 71 ~~~~V~~~Pt~~~f~----~g~~~~~~~~G---------~~~~~~l~~~i~~~~~~-------~---~---~~~~L~~~~ 124 (215)
T TIGR02187 71 EKYGVERVPTTIILE----EGKDGGIRYTG---------IPAGYEFAALIEDIVRV-------S---Q---GEPGLSEKT 124 (215)
T ss_pred HHcCCCccCEEEEEe----CCeeeEEEEee---------cCCHHHHHHHHHHHHHh-------c---C---CCCCCCHHH
Confidence 999999999999998 57554211111 11111111112111100 0 0 001111110
Q ss_pred CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccc
Q 014225 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL 295 (428)
Q Consensus 216 ~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~ 295 (428)
.-.+.++.+.++++.||++||++|+.+.+.++++..+. +++.+..|..+..
T Consensus 125 --~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~---------------- 175 (215)
T TIGR02187 125 --VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANEN---------------- 175 (215)
T ss_pred --HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCCC----------------
Confidence 11223345556777799999999999988888776653 2466766666644
Q ss_pred ccCCcchhHHHHhcCcCccceEEEECCCCc
Q 014225 296 PFGDPTIKELTKYFDVQGIPCLVIIGPEGK 325 (428)
Q Consensus 296 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~ 325 (428)
.++++.|+|.++||+++. .+|+
T Consensus 176 -------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 176 -------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred -------HHHHHHhCCccCCEEEEe-cCCE
Confidence 678899999999999876 6675
No 38
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.76 E-value=3.8e-18 Score=153.47 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=100.8
Q ss_pred hhccCCCCccc-C-CCCC-ceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225 201 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276 (428)
Q Consensus 201 ~~g~~~p~f~l-~-~~g~-~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~ 276 (428)
.+|.++|+|++ + .+|+ ..+++++++||++||+|| ++||++|..+++.|++++++|++. +++|++||+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~ 73 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST 73 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence 46999999999 7 4665 157888999999999999 999999999999999999999876 899999999
Q ss_pred CCCHHHHHHHHhc---CCccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225 277 DRDQTSFESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 277 d~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 331 (428)
|. ....++|... ...+.||++.|....+++.||+. ..|++||||++|+|++...
T Consensus 74 D~-~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 74 DT-HFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred CC-HHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 95 3444444432 22467889999899999999986 4699999999999999853
No 39
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.76 E-value=2.9e-18 Score=144.47 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=95.2
Q ss_pred cccCc-cccCCC--CEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 41 KDRDY-LLNQHG--TQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 41 ~~pdf-l~~~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
.+|+| +.+.+| .++++++++||+++|+||++||++|+.++|.|+++.+++ + +++++|+.+.+.+.+++++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHh
Confidence 57999 999988 889999999999999999999999999999999988774 3 899999999888999999988
Q ss_pred CCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 118 MPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 118 ~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
++..+.+. .|.. ..+++.|++.++|++++||+ +|+++..
T Consensus 77 ~~~~~~~~~~D~~--~~~~~~~~v~~~P~~~~ld~---~G~v~~~ 116 (127)
T cd03010 77 HGNPYAAVGFDPD--GRVGIDLGVYGVPETFLIDG---DGIIRYK 116 (127)
T ss_pred cCCCCceEEECCc--chHHHhcCCCCCCeEEEECC---CceEEEE
Confidence 76532221 2433 78999999999999999999 9988755
No 40
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.75 E-value=6.3e-18 Score=151.18 Aligned_cols=121 Identities=16% Similarity=0.262 Sum_probs=102.4
Q ss_pred hhccCCCCccc-C---CCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225 201 LLTNHDRGYLL-G---HPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275 (428)
Q Consensus 201 ~~g~~~p~f~l-~---~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is 275 (428)
.+|.++|+|+. . .+.. .+++++++||++||+|| +.|||+|..+++.|.+++++|.+. +++|++||
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~-~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS 72 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVS 72 (187)
T ss_pred ccCCcCCCcEEEEEeCCcce-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEe
Confidence 47999999997 3 3334 77888999999999999 999999999999999999999877 89999999
Q ss_pred cCCCHHHHHHHHhcC---CccccccCCcchhHHHHhcCc----Ccc--ceEEEECCCCcEEecccc
Q 014225 276 TDRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 276 ~d~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v----~~~--P~~~lid~~G~i~~~~~~ 332 (428)
+| +....++|.... ..+.||++.|.+..+++.||+ .++ |++||||++|+|++....
T Consensus 73 ~D-~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 73 TD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CC-CHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 98 455666666542 347889999999999999998 356 999999999999998643
No 41
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.75 E-value=1.6e-18 Score=150.84 Aligned_cols=115 Identities=13% Similarity=0.173 Sum_probs=89.2
Q ss_pred ccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHHHH
Q 014225 42 DRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFNN 113 (428)
Q Consensus 42 ~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~~~~~ 113 (428)
+|+| |.+.+|+++++++++||+|+|+|||+||+ |+.++|.|++++++|++.| +.+++|+.|. +.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 6899 99999999999999999999999999999 9999999999999998877 9999998753 3567899
Q ss_pred HHhc-CCCceeccCChHHHHH-HHhhcC--CCCCc-----------eEEEEcCCCCCCCccccc
Q 014225 114 YRAC-MPWLAVPYSDLETKKA-LNRKFD--IEGIP-----------CLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 114 ~~~~-~~~~~~~~~d~~~~~~-l~~~~~--v~~~P-----------~~~lid~~~~dG~i~~~~ 162 (428)
|+++ +++.+..+.+.+.... ....|+ +..+| +++|||+ +|+++.+.
T Consensus 79 f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~---~G~i~~~~ 139 (152)
T cd00340 79 FCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR---DGEVVKRF 139 (152)
T ss_pred HHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC---CCcEEEEE
Confidence 9976 5532111222111111 344444 34555 7999999 99998763
No 42
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.75 E-value=5.2e-18 Score=147.75 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=92.6
Q ss_pred CCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-------C
Q 014225 207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------R 278 (428)
Q Consensus 207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-------~ 278 (428)
-+|++ +.+|+ .+++++++||++||+||++|||+|..++|.|++++++|+++ ++.|++|+++ .
T Consensus 3 ~~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d 72 (153)
T TIGR02540 3 YSFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPD 72 (153)
T ss_pred ccceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCC
Confidence 36888 99999 99999999999999999999999999999999999999876 8999999962 3
Q ss_pred CHHHHHHHHhcCCccccccCCc-----chhHHHHhcCc---Cccce----EEEECCCCcEEecccc
Q 014225 279 DQTSFESYFGTMPWLALPFGDP-----TIKELTKYFDV---QGIPC----LVIIGPEGKTVTKQGR 332 (428)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~v---~~~P~----~~lid~~G~i~~~~~~ 332 (428)
+.+..++|+++...++||+..| ........|.+ .++|+ +||||++|+|+.+..+
T Consensus 73 ~~~~~~~f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g 138 (153)
T TIGR02540 73 SSKEIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP 138 (153)
T ss_pred CHHHHHHHHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC
Confidence 5678889987532367888654 11222222322 35898 9999999999998654
No 43
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.75 E-value=1.6e-17 Score=150.63 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=92.6
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLN 109 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~ 109 (428)
.+..+|+| +.+.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|+.| .+.+
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHH
Confidence 46789999 9999999999999999999999999999999999999999999999988 999999975 3567
Q ss_pred HHHHHHhcCCCceeccCCh--H--HHH--------HHHhhcCCC----CC---ceEEEEcCCCCCCCccccc
Q 014225 110 AFNNYRACMPWLAVPYSDL--E--TKK--------ALNRKFDIE----GI---PCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 110 ~~~~~~~~~~~~~~~~~d~--~--~~~--------~l~~~~~v~----~~---P~~~lid~~~~dG~i~~~~ 162 (428)
.+++|+++++..+..+.+. + ... .+...|+.. .+ |+++|||+ +|+++.+.
T Consensus 93 ~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~---~G~iv~~~ 161 (199)
T PTZ00056 93 DIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK---SGNVVAYF 161 (199)
T ss_pred HHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC---CCcEEEEe
Confidence 8999998876422211110 0 001 122334432 23 37999999 99998654
No 44
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.74 E-value=5.6e-18 Score=152.20 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=95.0
Q ss_pred ccccccccCc-cccCC--CCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225 36 SLLASKDRDY-LLNQH--GTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 111 (428)
Q Consensus 36 ~~~g~~~pdf-l~~~~--G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~ 111 (428)
...|..+|+| +.+.+ |+.++++++ +||+++|+||++||++|+.++|.|+++++ .+ +++++|+.|++.+..
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHH
Confidence 3568999999 98888 467777765 79999999999999999999999988754 34 899999998888889
Q ss_pred HHHHhcCCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225 112 NNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 112 ~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
++|+++++..... ..|.. ..+.+.|++.++|++++||+ +|++++..
T Consensus 113 ~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~---~G~i~~~~ 159 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRH 159 (185)
T ss_pred HHHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECC---CceEEEEE
Confidence 9999987642211 22433 67888999999999999999 99988663
No 45
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.74 E-value=6.9e-18 Score=142.06 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=89.7
Q ss_pred CCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHHHHHhcCCCceecc
Q 014225 51 GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPWLAVPY 125 (428)
Q Consensus 51 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----~~~~~~~~~~~~~~~~~~~~ 125 (428)
|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|+.+ .+.+.++++++++++.+..+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 46899999999999999999999999999999999999999876 999999763 45778899999877532223
Q ss_pred CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225 126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
.|.+ ..+.+.|++.++|++++||+ +|++++..
T Consensus 91 ~D~~--~~~~~~~~v~~~P~~~vid~---~G~v~~~~ 122 (126)
T cd03012 91 NDND--YATWRAYGNQYWPALYLIDP---TGNVRHVH 122 (126)
T ss_pred ECCc--hHHHHHhCCCcCCeEEEECC---CCcEEEEE
Confidence 3443 78999999999999999999 99998764
No 46
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.74 E-value=1.3e-17 Score=152.62 Aligned_cols=140 Identities=10% Similarity=0.078 Sum_probs=113.0
Q ss_pred hhccCCCCccc-CCCCCceecccccCCcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~ 278 (428)
.+|.++|+|++ +.+|. .+.+++++||++ |++||++|||+|..+++.|.+++++|+++ +++|++||+|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence 57999999999 89998 888899999975 67888999999999999999999999977 89999999996
Q ss_pred C--HHHHHHHHhcC--CccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225 279 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 347 (428)
Q Consensus 279 ~--~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 347 (428)
. ...|.+++++. .-++||+..|.+..+++.||+. ..|++||||++|+|+....... .+.
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~----------~~g 142 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQ----------EVG 142 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCC----------CCC
Confidence 3 44577776643 2378999999999999999983 6899999999999998742211 122
Q ss_pred HHHHHHHHHHHHH
Q 014225 348 AKLEFLEKQMEEE 360 (428)
Q Consensus 348 ~~~~~L~~~l~~~ 360 (428)
..++++.+.|+++
T Consensus 143 r~~~eilr~l~~l 155 (215)
T PRK13599 143 RNVDEILRALKAL 155 (215)
T ss_pred CCHHHHHHHHHHh
Confidence 3456666666554
No 47
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.73 E-value=8.8e-18 Score=154.76 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=93.8
Q ss_pred ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CC
Q 014225 36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------ED 107 (428)
Q Consensus 36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~ 107 (428)
...|..+||| |.+.+|+.+++++++||+|+|+||++||++|+.++|.|++++++|+++| ++||+|+.| .+
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s 150 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGS 150 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCC
Confidence 3578999999 9999999999999999999999999999999999999999999999988 999999975 34
Q ss_pred hHHHHHHH-hcCCCceeccC--ChHHHHHHHh-------hcC------CCCCceEEEEcCCCCCCCccccc
Q 014225 108 LNAFNNYR-ACMPWLAVPYS--DLETKKALNR-------KFD------IEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 108 ~~~~~~~~-~~~~~~~~~~~--d~~~~~~l~~-------~~~------v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
.+..++|+ ++++.....+. |.+. ..+.. .++ +...|+++|||+ +|+++.+.
T Consensus 151 ~~ei~~f~~~~~g~~fPvl~~~D~~G-~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk---~GkVv~~~ 217 (236)
T PLN02399 151 NPEIKQFACTRFKAEFPIFDKVDVNG-PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK---NGKVVERY 217 (236)
T ss_pred HHHHHHHHHHhcCCCCccccccCCCc-chhhHHHHHHHHhcCCccCCccccCceEEEECC---CCcEEEEE
Confidence 56788887 45543211121 2111 12211 222 355799999999 99998764
No 48
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.73 E-value=2.2e-17 Score=135.18 Aligned_cols=112 Identities=29% Similarity=0.512 Sum_probs=102.1
Q ss_pred Cccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC-HHHHHH
Q 014225 208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES 285 (428)
Q Consensus 208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~-~~~~~~ 285 (428)
+|.+ +.+|+ .+++++++||+++|+||++||++|+..++.|.++.+++... ++.+++|++|.+ .+.+++
T Consensus 1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~~~v~~d~~~~~~~~~ 70 (116)
T cd02966 1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD---------GVEVVGVNVDDDDPAAVKA 70 (116)
T ss_pred CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC---------CeEEEEEECCCCCHHHHHH
Confidence 4667 88999 99999999999999999999999999999999999998744 799999999987 999999
Q ss_pred HHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 286 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
++...+ ..+++..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 999887 78888888788999999999999999999999999874
No 49
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.73 E-value=2.3e-17 Score=146.58 Aligned_cols=118 Identities=18% Similarity=0.351 Sum_probs=103.9
Q ss_pred cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 115 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~ 115 (428)
.+|..+|+| +.+.+|+.+++++++||+++|+||++||++|+..+|.|+++++++++.+ +.+++|+.|.+.+.+.+++
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHH
Confidence 368899999 9999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred hcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 116 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 116 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
++++.....+.+.. ..+.+.|++..+|++++||+ +|+++..
T Consensus 114 ~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~g~i~~~ 154 (173)
T PRK03147 114 NRYGLTFPVAIDKG--RQVIDAYGVGPLPTTFLIDK---DGKVVKV 154 (173)
T ss_pred HHhCCCceEEECCc--chHHHHcCCCCcCeEEEECC---CCcEEEE
Confidence 98764222222333 78999999999999999999 9988754
No 50
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.72 E-value=3.4e-17 Score=147.52 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=94.9
Q ss_pred cccccccCc-cccCCCCEEecc--cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 113 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~ 113 (428)
.+|+.+|+| +.+.+|+.++++ .++||+++|+||++||++|+.++|.+++++++. + +.+++|+ +++.+..++
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is-~~~~~~~~~ 120 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMIS-DGTPAEHRR 120 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEe-CCCHHHHHH
Confidence 468999999 999999999995 579999999999999999999999999988653 3 6688887 456678899
Q ss_pred HHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 114 YRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|+++++....++. . ...+.+.|++..+|++++||+ +|++++.
T Consensus 121 ~~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~---~G~I~~~ 162 (189)
T TIGR02661 121 FLKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQ---DGKIRAK 162 (189)
T ss_pred HHHhcCCCcceee-c--hhHHHHhccCCccceEEEECC---CCeEEEc
Confidence 9998875433332 2 268889999999999999999 9998865
No 51
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.72 E-value=2.4e-17 Score=167.21 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=98.6
Q ss_pred cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNA 110 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----~~~~~ 110 (428)
..++.+|+| +.+.+|+++.++ +||+|+|+|||+||++|+.++|.|++++++++..+ ++||+|+.+ .+.+.
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGD 108 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHH
Confidence 346789999 999999999998 89999999999999999999999999999998765 999999863 34566
Q ss_pred HHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 111 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 111 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
++++++.+++..+|+ ..+....+++.|++.++|+++|||+ +|+++..
T Consensus 109 ~~~~~~~~~y~~~pV-~~D~~~~lak~fgV~giPTt~IIDk---dGkIV~~ 155 (521)
T PRK14018 109 FQKWYAGLDYPKLPV-LTDNGGTLAQSLNISVYPSWAIIGK---DGDVQRI 155 (521)
T ss_pred HHHHHHhCCCcccce-eccccHHHHHHcCCCCcCeEEEEcC---CCeEEEE
Confidence 788888777655553 2232378999999999999999999 9998865
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.72 E-value=1.6e-16 Score=163.74 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.|++|+|+|||+||++|+.+.|.|+++++.+++. ..+.++.++++.+ ..
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~~-----------------------~~ 422 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTAN-----------------------ET 422 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCCC-----------------------cc
Confidence 4789999999999999999999999999988753 2467777776644 44
Q ss_pred HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 363 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~ 363 (428)
.++.|+++++||+++++++|++..+.. | ....+.|.+.|++.+..
T Consensus 423 ~~~~~~v~~~Pt~~~~~~~~~~~~~~~-------G-------~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 423 PLEEFSWSAFPTILFVKAGERTPIPYE-------G-------ERTVEGFKEFVNKHATN 467 (477)
T ss_pred chhcCCCcccCeEEEEECCCcceeEec-------C-------cCCHHHHHHHHHHcCCC
Confidence 678899999999999988777533321 1 11235667777765543
No 53
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.72 E-value=3.9e-17 Score=144.97 Aligned_cols=117 Identities=16% Similarity=0.269 Sum_probs=101.7
Q ss_pred cccccCc-cccCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225 39 ASKDRDY-LLNQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN 109 (428)
Q Consensus 39 g~~~pdf-l~~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~ 109 (428)
|..+|+| +.+.+|++++++++ +||++||+||++||+.|..+++.|.+++++|++.+ +.+++|+.|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 5678999 99999999999998 99999999999999999999999999999998766 9999999985 568
Q ss_pred HHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225 110 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 110 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
.++++++++++...-..|.+ ..+.+.|++..+|+++|||+ +|++++..
T Consensus 79 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~---~G~v~~~~ 126 (171)
T cd02969 79 NMKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDP---DGKLVYRG 126 (171)
T ss_pred HHHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECC---CCeEEEee
Confidence 89999988765422223443 68999999999999999999 99998663
No 54
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.72 E-value=3.4e-17 Score=148.93 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=108.5
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEE-EEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
+|..+|+|++ +..| .+++++++||+++| +||++|||+|..+++.|.+++++|+++ +++|++||+|..
T Consensus 4 vG~~aP~F~~~~~~g--~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~ 72 (202)
T PRK13190 4 LGQKAPDFTVNTTKG--PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSI 72 (202)
T ss_pred CCCCCCCcEEecCCC--cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCH
Confidence 6899999999 6665 68999999997766 678999999999999999999999977 899999999953
Q ss_pred H--HHHHH-HHhcCC-ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCCCCChHH
Q 014225 280 Q--TSFES-YFGTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK 349 (428)
Q Consensus 280 ~--~~~~~-~~~~~~-~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~ 349 (428)
. .+|.+ +....+ .+.||++.|.+..+++.||+. .+|++||||++|+|++....+. .....
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~----------~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPA----------ETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCC----------CCCCC
Confidence 2 23332 333344 368999999999999999984 5899999999999998753221 11234
Q ss_pred HHHHHHHHHHHH
Q 014225 350 LEFLEKQMEEEA 361 (428)
Q Consensus 350 ~~~L~~~l~~~~ 361 (428)
+++|.+.|+.+.
T Consensus 143 ~~ellr~l~~l~ 154 (202)
T PRK13190 143 IDEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHHhh
Confidence 577777776553
No 55
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.72 E-value=4.7e-17 Score=139.28 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=104.9
Q ss_pred CCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHH
Q 014225 205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 282 (428)
Q Consensus 205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~ 282 (428)
.+|+|++ +.+|+ .+++++++||+++|+|| ++||++|...++.|.+++++|+.. ++.+++|+.| +.+.
T Consensus 1 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d-~~~~ 69 (140)
T cd02971 1 KAPDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVD-SPFS 69 (140)
T ss_pred CCCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCC-CHHH
Confidence 3689999 99999 99999999999999999 689999999999999999999755 7999999998 5677
Q ss_pred HHHHHhcCCccccccCCcchhHHHHhcCcCccc---------eEEEECCCCcEEeccccc
Q 014225 283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQGRN 333 (428)
Q Consensus 283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~~ 333 (428)
.++|.++++...|+++.|....+.+.||+...| +++|||++|+|++++.+.
T Consensus 70 ~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 70 HKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred HHHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 888988884578888889888999999988665 899999999999986543
No 56
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.71 E-value=5.5e-17 Score=151.42 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=99.9
Q ss_pred hhccCCCCccc-C-CCCC-ceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225 201 LLTNHDRGYLL-G-HPPD-EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275 (428)
Q Consensus 201 ~~g~~~p~f~l-~-~~g~-~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is 275 (428)
++|+++|+|++ + .+|. +.++++++ +||++||+|| +.|||+|..+++.|++++++|+++ +++|++||
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigIS 139 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGVS 139 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 57999999998 5 4553 16899997 8888888888 799999999999999999999977 89999999
Q ss_pred cCCCHHHHHHHHh----c--CCccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccc
Q 014225 276 TDRDQTSFESYFG----T--MPWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 276 ~d~~~~~~~~~~~----~--~~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~ 331 (428)
+|. ....+++.. + ...+.||++.|.+..+++.||+. ..|++||||++|+|++...
T Consensus 140 ~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 140 VDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred CCC-HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 996 333333332 2 13477999999999999999985 5899999999999999863
No 57
>PRK15000 peroxidase; Provisional
Probab=99.71 E-value=4.8e-17 Score=147.47 Aligned_cols=139 Identities=16% Similarity=0.243 Sum_probs=106.2
Q ss_pred hhccCCCCccc-CCC--CCcee---ccccc-CCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 014225 201 LLTNHDRGYLL-GHP--PDEKV---PVSSL-VGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 272 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~--g~~~v---~l~~~-~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv 272 (428)
++|.++|+|++ +.. |+ .+ +++++ +||+++|+||+ .||++|..+++.|.+++++|+++ +++|+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi 72 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV 72 (200)
T ss_pred cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence 47999999999 653 44 43 44554 79999999998 49999999999999999999977 89999
Q ss_pred EEEcCCCH--HHHHHH-HhcCC--ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhccccc
Q 014225 273 FVSTDRDQ--TSFESY-FGTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQEN 341 (428)
Q Consensus 273 ~is~d~~~--~~~~~~-~~~~~--~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~ 341 (428)
+||+|... ..|.+. ....+ -+.||++.|....+++.||+. .+|++||||++|+|++...+++
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~------- 145 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL------- 145 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC-------
Confidence 99999532 334332 22232 268999999999999999997 7999999999999999754322
Q ss_pred CCCCChHHHHHHHHHHHH
Q 014225 342 AYPFTEAKLEFLEKQMEE 359 (428)
Q Consensus 342 ~~p~~~~~~~~L~~~l~~ 359 (428)
+.. +.++++.+.|+.
T Consensus 146 --~~g-r~~~eilr~l~a 160 (200)
T PRK15000 146 --PLG-RNIDEMLRMVDA 160 (200)
T ss_pred --CCC-CCHHHHHHHHHH
Confidence 122 245666666654
No 58
>PLN02412 probable glutathione peroxidase
Probab=99.71 E-value=1.2e-17 Score=147.36 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=88.7
Q ss_pred ccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHH
Q 014225 40 SKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAF 111 (428)
Q Consensus 40 ~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~~~ 111 (428)
..+||| |.+.+|+.+++++++||++||+||++||++|+.++|.|++++++|++.| ++|++|+.|. +.+.+
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHH
Confidence 668999 9999999999999999999999999999999999999999999999988 9999999763 33445
Q ss_pred HHH-HhcCCCceecc-C--ChHHHHHHHhhc-----------C--CCCCceEEEEcCCCCCCCccccc
Q 014225 112 NNY-RACMPWLAVPY-S--DLETKKALNRKF-----------D--IEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 112 ~~~-~~~~~~~~~~~-~--d~~~~~~l~~~~-----------~--v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
.++ .++++.. +|. . +.+. ......| + +...|+++|||+ +|+++...
T Consensus 85 ~~~~~~~~~~~-fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~---~G~vv~~~ 147 (167)
T PLN02412 85 QQTVCTRFKAE-FPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK---EGKVVQRY 147 (167)
T ss_pred HHHHHHccCCC-CceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC---CCcEEEEE
Confidence 444 4654431 221 1 1110 1222222 2 666899999999 99998774
No 59
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.71 E-value=6.5e-17 Score=142.96 Aligned_cols=136 Identities=8% Similarity=0.027 Sum_probs=102.6
Q ss_pred hhccCCCCccc-CC-----CCCc----eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEE
Q 014225 201 LLTNHDRGYLL-GH-----PPDE----KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE 270 (428)
Q Consensus 201 ~~g~~~p~f~l-~~-----~g~~----~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 270 (428)
.+|.+.|...+ +. +|.+ .++.++++||+++|+|||+||++|+.+.|.|.++.+ + ++.
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~---------~~~ 90 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A---------KFP 90 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c---------CCC
Confidence 35888888766 33 3321 567788999999999999999999999999999833 2 567
Q ss_pred E------EEEEcCCCHHHHHHHHh----cCCccccc---cCCcchhHHHHhcCcCccceE-EEECCCCcEEeccccchhh
Q 014225 271 V------VFVSTDRDQTSFESYFG----TMPWLALP---FGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLIN 336 (428)
Q Consensus 271 i------v~is~d~~~~~~~~~~~----~~~~~~~~---~~~d~~~~~~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~~ 336 (428)
+ ++|+.|+.......|++ +.. ..+| +..|..+.+...|++.++|++ ||||++|+|+.+..|
T Consensus 91 ~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G---- 165 (184)
T TIGR01626 91 PVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG---- 165 (184)
T ss_pred cccccceEEEECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC----
Confidence 7 99999976555444443 333 3444 777778889999999999988 899999999999654
Q ss_pred cccccCCCCChHHHHHHHHHHHHHH
Q 014225 337 LYQENAYPFTEAKLEFLEKQMEEEA 361 (428)
Q Consensus 337 ~~g~~~~p~~~~~~~~L~~~l~~~~ 361 (428)
+.+++.++++...|++++
T Consensus 166 -------~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 166 -------ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred -------CCCHHHHHHHHHHHHHHh
Confidence 456666666666666654
No 60
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.70 E-value=9e-17 Score=147.14 Aligned_cols=140 Identities=9% Similarity=0.115 Sum_probs=109.2
Q ss_pred hhccCCCCccc-CCCCCceecccccCCcEEEE-EEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~ 278 (428)
.+|.++|+|++ +.+|+ ....++++||+++| +||++||++|..+++.|.+++++|+++ +++|++||+|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~Ds 77 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVDS 77 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECCC
Confidence 46999999999 88886 54445589997665 778999999999999999999999977 89999999996
Q ss_pred CHH--HHHHHHhcC-C-ccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225 279 DQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 347 (428)
Q Consensus 279 ~~~--~~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 347 (428)
... +|.++.++. + -+.||++.|.+..+++.||+. ..|++||||++|+|+.....++ +..
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~---------~~g- 147 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM---------EIG- 147 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC---------CCC-
Confidence 432 466666531 1 377999999999999999973 4799999999999999754332 112
Q ss_pred HHHHHHHHHHHHH
Q 014225 348 AKLEFLEKQMEEE 360 (428)
Q Consensus 348 ~~~~~L~~~l~~~ 360 (428)
+.++++.+.|+.+
T Consensus 148 r~~~eilr~l~al 160 (215)
T PRK13191 148 RNIDEILRAIRAL 160 (215)
T ss_pred CCHHHHHHHHHHh
Confidence 3466777766654
No 61
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.70 E-value=4.4e-17 Score=140.21 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=96.6
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 115 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~ 115 (428)
+|+.+|+| +.+.+|+++++++++||+++|+||++| |++|+.++|.|++++++++ + +.+++|+.|. ....+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 58899999 999999999999999999999999999 6999999999999999973 4 9999999986 44568888
Q ss_pred hcCCCceecc-CChHHHHHHHhhcCCCC------CceEEEEcCCCCCCCcccccc
Q 014225 116 ACMPWLAVPY-SDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 116 ~~~~~~~~~~-~d~~~~~~l~~~~~v~~------~P~~~lid~~~~dG~i~~~~~ 163 (428)
++++...++. .|.. ...+.+.|++.. .|+++|||+ +|+|+....
T Consensus 77 ~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~---~G~I~~~~~ 127 (143)
T cd03014 77 GAEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDE---NGKVIYVEL 127 (143)
T ss_pred HhcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcC---CCeEEEEEE
Confidence 8776433332 2321 168889999853 799999999 999987754
No 62
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.70 E-value=5e-17 Score=143.55 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=99.4
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 115 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~ 115 (428)
+|+.+|+| |.+.+|+.+++++++||+++|+||++| |++|..++|.|+++++++. + +++++||.|.. ...++|.
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f~ 94 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRFC 94 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHHH
Confidence 69999999 999999999999999999999999999 9999999999999999983 4 99999999854 5578899
Q ss_pred hcCCCcee-ccCChHHHHHHHhhcCCCCCc---------eEEEEcCCCCCCCcccccc
Q 014225 116 ACMPWLAV-PYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 116 ~~~~~~~~-~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~dG~i~~~~~ 163 (428)
++++...+ .++|.. ...+++.||+...| +++|||+ +|+|++...
T Consensus 95 ~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~---~G~I~~~~~ 148 (167)
T PRK00522 95 GAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDE---NNKVVYSEL 148 (167)
T ss_pred HhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECC---CCeEEEEEE
Confidence 88875433 333422 15899999998777 9999999 999987754
No 63
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.70 E-value=1.1e-16 Score=138.48 Aligned_cols=114 Identities=18% Similarity=0.348 Sum_probs=96.8
Q ss_pred CCCCccc-CCCCCceecccccC-CcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225 205 HDRGYLL-GHPPDEKVPVSSLV-GKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 281 (428)
Q Consensus 205 ~~p~f~l-~~~g~~~v~l~~~~-gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~ 281 (428)
.+|+|++ +.+|+ .++++++. ++++ |++||++|||+|+.++|.|.++++++++. ++.+|+|+.|.. +
T Consensus 1 ~~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~-~ 69 (149)
T cd02970 1 TAPDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESP-E 69 (149)
T ss_pred CCCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCH-H
Confidence 3689999 99999 99999975 4555 55556999999999999999999999876 799999999854 4
Q ss_pred HHHHHHhcCCccccccCCcchhHHHHhcCcC-----------------------------ccceEEEECCCCcEEecc
Q 014225 282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~ 330 (428)
...+|.+..+ +++|+..|.+..+.+.||+. .+|++||||++|+|++.+
T Consensus 70 ~~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 70 KLEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 4556666655 78999999999999999984 799999999999999875
No 64
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.70 E-value=3.1e-17 Score=145.81 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=93.8
Q ss_pred cccccccCc-cccCCCC--EEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225 37 LLASKDRDY-LLNQHGT--QVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 112 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~--~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~ 112 (428)
.+|..+|+| +.+.+|+ +++++++ +||+++|+||++||++|+.++|.+++++++ + +++++|+.+...+...
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHH
Confidence 568999999 9999997 4555565 799999999999999999999999887643 4 8999999988777788
Q ss_pred HHHhcCCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 113 NYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 113 ~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+|++++++.+.++ .|.. ..+.+.|++.++|++++||+ +|++++.
T Consensus 109 ~~~~~~~~~f~~v~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~ 153 (173)
T TIGR00385 109 KFLKELGNPYQAILIDPN--GKLGLDLGVYGAPETFLVDG---NGVILYR 153 (173)
T ss_pred HHHHHcCCCCceEEECCC--CchHHhcCCeeCCeEEEEcC---CceEEEE
Confidence 8998877533211 2443 68899999999999999999 9998866
No 65
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.70 E-value=1.4e-16 Score=145.19 Aligned_cols=138 Identities=11% Similarity=0.131 Sum_probs=104.5
Q ss_pred hccCCCCccc-CCCCCceecccccCC-cEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~ 278 (428)
+|..+|+|++ +.+| .+++++++| |++ |++||++|||.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence 4889999999 7775 589999998 654 55788999999999999999999999877 89999999995
Q ss_pred CH--HHHHHHHhcC--CccccccCCcchhHHHHhcCcC--------ccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225 279 DQ--TSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ--------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 346 (428)
Q Consensus 279 ~~--~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~v~--------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 346 (428)
.. .+|.+.+... .-+.||++.|.+..+++.||+. ..|++||||++|+|+......+ . .
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~-------~---~ 139 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA-------T---T 139 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC-------C---C
Confidence 32 2233322221 3478999999999999999985 2457999999999998853322 0 1
Q ss_pred hHHHHHHHHHHHHH
Q 014225 347 EAKLEFLEKQMEEE 360 (428)
Q Consensus 347 ~~~~~~L~~~l~~~ 360 (428)
....++|.+.|+++
T Consensus 140 gr~~~ell~~l~~l 153 (203)
T cd03016 140 GRNFDEILRVVDAL 153 (203)
T ss_pred CCCHHHHHHHHHHH
Confidence 22356666666554
No 66
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.69 E-value=1.6e-16 Score=144.46 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=99.7
Q ss_pred hhccCCCCccc-----CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225 201 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274 (428)
Q Consensus 201 ~~g~~~p~f~l-----~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i 274 (428)
.+|.++|+|++ +.+|. .+++++++||+++|+||+ .||++|..+++.|.+++++|++. +++|++|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I 76 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC 76 (199)
T ss_pred ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 36999999995 35667 899999999999999995 78999999999999999999987 8999999
Q ss_pred EcCCCHHHHHHHHhc------CCccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225 275 STDRDQTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 275 s~d~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 331 (428)
|+|.... ..++... .+.++||++.|.+.++++.||+. .+|++||||++|+|+....
T Consensus 77 S~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~ 144 (199)
T PTZ00253 77 SMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV 144 (199)
T ss_pred eCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe
Confidence 9996432 2222211 22378999999999999999985 4699999999999998753
No 67
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.69 E-value=1.1e-16 Score=137.41 Aligned_cols=116 Identities=25% Similarity=0.374 Sum_probs=98.6
Q ss_pred CCCccc-CCCCCceecccccCCcEEEEEEeccCChh-HHhhhHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEEcCC---C
Q 014225 206 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR---D 279 (428)
Q Consensus 206 ~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~iv~is~d~---~ 279 (428)
+|+|++ +.+|+ .+++++++||+++|+||++||++ |..+++.|+++++++++. + .++++++|++|. +
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCCC
Confidence 689999 99999 99999999999999999999997 999999999999999875 2 359999999985 4
Q ss_pred HHHHHHHHhcCCccccccCCcc---hhHHHHhcCcCcc--------------ceEEEECCCCcEEecc
Q 014225 280 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGI--------------PCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~v~~~--------------P~~~lid~~G~i~~~~ 330 (428)
.+.+++|.++++ .+++++.+. ...+++.||+... |++||||++|+|+.++
T Consensus 74 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 74 PEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 578889998876 566666554 4788999997544 5699999999999874
No 68
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.69 E-value=1.2e-16 Score=136.85 Aligned_cols=114 Identities=26% Similarity=0.366 Sum_probs=98.0
Q ss_pred cccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC
Q 014225 41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 118 (428)
Q Consensus 41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~ 118 (428)
.+|+| +.+.+|+.+++++++||+++|+|| ++||+.|..++|.|+++++++++.+ +++++|+.|. .+.+++|.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHh
Confidence 58999 999999999999999999999999 5899999999999999999998876 9999999985 46688998876
Q ss_pred CCceeccCChHHHHHHHhhcCCCCC---------ceEEEEcCCCCCCCccccc
Q 014225 119 PWLAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 119 ~~~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lid~~~~dG~i~~~~ 162 (428)
++....+.|.+ ..+.+.|++... |++++||+ +|++++..
T Consensus 79 ~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~~~~ 126 (140)
T cd03017 79 GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIVKVW 126 (140)
T ss_pred CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECC---CCEEEEEE
Confidence 64322233444 689999999988 99999999 99998764
No 69
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.68 E-value=1.4e-16 Score=133.31 Aligned_cols=107 Identities=22% Similarity=0.377 Sum_probs=95.2
Q ss_pred CCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-CHHHHH
Q 014225 207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQTSFE 284 (428)
Q Consensus 207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-~~~~~~ 284 (428)
|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|++|. +.++++
T Consensus 1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA 65 (123)
T ss_pred CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence 78999 99999 9999999999999999999999999999999988765 3578888876 478899
Q ss_pred HHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 285 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 285 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
++.++++ +.+|+..|.+..+.+.|++.++|+++|||++| ++++.
T Consensus 66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 9999887 68888888888999999999999999999999 77764
No 70
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.68 E-value=2.1e-16 Score=136.87 Aligned_cols=120 Identities=20% Similarity=0.258 Sum_probs=98.4
Q ss_pred ccccccCc-cccCCCCEEecccCCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 114 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~ 114 (428)
+|..+|+| +.+.+|+.+++++++| |+++|.|| ++||++|...+|.|+++++++++.+ +.+++|+.|. .+..++|
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRAW 79 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHHH
Confidence 58899999 9999999999999999 99888888 9999999999999999999999876 9999999875 4568888
Q ss_pred HhcCCCceeccCChHHHHHHHhhcCCCC----C--ceEEEEcCCCCCCCcccccc
Q 014225 115 RACMPWLAVPYSDLETKKALNRKFDIEG----I--PCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~--P~~~lid~~~~dG~i~~~~~ 163 (428)
.+++++...-++|.+....+.+.|++.. + |++++||+ +|++++...
T Consensus 80 ~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~---~G~v~~~~~ 131 (149)
T cd03018 80 AEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDR---DGIIRYAWV 131 (149)
T ss_pred HHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECC---CCEEEEEEe
Confidence 8876643222334322267888999873 3 48999999 999887743
No 71
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.68 E-value=1.6e-16 Score=138.55 Aligned_cols=116 Identities=20% Similarity=0.296 Sum_probs=97.2
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 115 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~ 115 (428)
+|..+|+| +.+.+|+.+++++++||+++|+||++ ||+.|+.+++.|+++++++++.+ +++|+|+.|. .+.+++|.
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~ 82 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFA 82 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHH
Confidence 58899999 99999999999999999999999986 67889999999999999999887 9999999985 57788999
Q ss_pred hcCCCceeccCChHHHHHHHhhcCCCCC------------ceEEEEcCCCCCCCcccc
Q 014225 116 ACMPWLAVPYSDLETKKALNRKFDIEGI------------PCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 116 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~------------P~~~lid~~~~dG~i~~~ 161 (428)
++++....-+.|.. ..+.+.|++... |+++|||+ +|+|+..
T Consensus 83 ~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 135 (154)
T PRK09437 83 EKELLNFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDA---DGKIEHV 135 (154)
T ss_pred HHhCCCCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECC---CCEEEEE
Confidence 87654222222433 678899998654 67899999 9998866
No 72
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.68 E-value=2.9e-16 Score=173.98 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=104.6
Q ss_pred hccCCCCccc-C--CCCCceecc-cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc-
Q 014225 202 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST- 276 (428)
Q Consensus 202 ~g~~~p~f~l-~--~~g~~~v~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~- 276 (428)
.|.++|+|.. + .+|. .+++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||+|+.
T Consensus 393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~ 462 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA 462 (1057)
T ss_pred cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence 5889999987 4 6888 8988 5899999999999999999999999999999999866 799999974
Q ss_pred --CC--CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225 277 --DR--DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 277 --d~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
|. +.+++++++.+.+ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus 463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 32 4678888988776 678888888889999999999999999999999998843
No 73
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.68 E-value=9e-17 Score=144.08 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=88.9
Q ss_pred cccccCc-cccCCCCEEecccCCCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225 39 ASKDRDY-LLNQHGTQVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN 109 (428)
Q Consensus 39 g~~~pdf-l~~~~G~~v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~ 109 (428)
+..+|+| +.+.+|+++++++++||++ ++.|||+||++|+.++|.|++++++|+++| ++|++|+.|. +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 4568999 9999999999999999954 566799999999999999999999999887 9999999752 346
Q ss_pred HHHHHHh-cCCCceeccCC--hH--HHHHHH------------hhcCCCCCce---EEEEcCCCCCCCccccc
Q 014225 110 AFNNYRA-CMPWLAVPYSD--LE--TKKALN------------RKFDIEGIPC---LVVLQPYDDKDDATLHD 162 (428)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~d--~~--~~~~l~------------~~~~v~~~P~---~~lid~~~~dG~i~~~~ 162 (428)
...+|++ ++++.+..+.+ .+ ....+. ..+++.++|+ ++|||+ +|+|+.+.
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~---~G~Iv~~~ 164 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDG---QGKVVKYF 164 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECC---CCCEEEEE
Confidence 6788875 55542211211 11 001222 1236778995 699999 99998764
No 74
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.67 E-value=3.6e-16 Score=134.20 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=97.1
Q ss_pred cccCc-cccCCCCEEecccCCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChHHHHHH
Q 014225 41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNAFNNY 114 (428)
Q Consensus 41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~ii~vs~D~---~~~~~~~~ 114 (428)
.+|+| +.+.+|+++++++++||+++|+||++||++ |..+++.|+++++++++.+ .++++++|+.|. +.+.+++|
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 37899 999999999999999999999999999998 9999999999999998864 359999999985 35778889
Q ss_pred HhcCC--CceeccCChHHHHHHHhhcCCCC--------------CceEEEEcCCCCCCCcccc
Q 014225 115 RACMP--WLAVPYSDLETKKALNRKFDIEG--------------IPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 115 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~~--------------~P~~~lid~~~~dG~i~~~ 161 (428)
+++++ |..+.. ..+....+++.||+.. .|+++|||+ +|+++..
T Consensus 81 ~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTG-TPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDP---DGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEEC-CHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECC---CCCEEEe
Confidence 98764 655554 2333478999998653 357999999 9998754
No 75
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.66 E-value=3e-16 Score=139.56 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=93.9
Q ss_pred ccccccCc-cccCCC----CEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225 38 LASKDRDY-LLNQHG----TQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 111 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G----~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~ 111 (428)
+|+.+|+| +.+.+| +.+++++++||+++|+|| ++||++|..++|.|++++++|++.+ +.+++|+.|.... .
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~-~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFS-H 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHH-H
Confidence 48899999 888877 789999999999999999 8999999999999999999999877 9999999886432 2
Q ss_pred HHHHhc---------CCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccccc
Q 014225 112 NNYRAC---------MPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 112 ~~~~~~---------~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~~ 163 (428)
+.+.+. .+|..+ .|.+ ..+.+.|++. .+|+++|||+ +|++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l--~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~---~G~I~~~~~ 137 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLL--ADPK--KKISRDYGVLDEEEGVALRGTFIIDP---EGIIRHITV 137 (173)
T ss_pred HHHHHhhhhhCCccCcceeEE--ECCc--hhHHHHhCCccccCCceeeEEEEECC---CCeEEEEEe
Confidence 333332 223222 2443 7899999986 6789999999 999987753
No 76
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.66 E-value=1.5e-16 Score=138.47 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=86.5
Q ss_pred cCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHHH
Q 014225 43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNY 114 (428)
Q Consensus 43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~~~~~ 114 (428)
-+| |.+.+|+++++++++||+++|+|||+||++|+.++|.|++++++|+++| +++++|+.+ .+.+..++|
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHH
Confidence 467 8899999999999999999999999999999999999999999999887 999999852 345678889
Q ss_pred Hhc-CCCceeccCCh---HHHHHHHhhcC---CCCCce----EEEEcCCCCCCCccccc
Q 014225 115 RAC-MPWLAVPYSDL---ETKKALNRKFD---IEGIPC----LVVLQPYDDKDDATLHD 162 (428)
Q Consensus 115 ~~~-~~~~~~~~~d~---~~~~~l~~~~~---v~~~P~----~~lid~~~~dG~i~~~~ 162 (428)
+++ +++.+..+.+. +........|. ...+|+ ++|||+ +|+++...
T Consensus 81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~---~G~v~~~~ 136 (153)
T TIGR02540 81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFW 136 (153)
T ss_pred HHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcC---CCcEEEEE
Confidence 874 55422222120 00011111222 245898 999999 99998663
No 77
>PRK13189 peroxiredoxin; Provisional
Probab=99.66 E-value=7.7e-16 Score=141.80 Aligned_cols=120 Identities=13% Similarity=0.185 Sum_probs=96.4
Q ss_pred hhccCCCCccc-CCCCCceecccc-cCCcEEE-EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 201 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
.+|..+|+|++ +..|. +.+++ ++||+++ ++||++|||.|..+++.|.+++++|+++ +++|++||+|
T Consensus 10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 36999999999 77775 56766 5999655 5677999999999999999999999877 8999999999
Q ss_pred CCH--HHHHHHHhc-CC-ccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccc
Q 014225 278 RDQ--TSFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 278 ~~~--~~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~ 331 (428)
... .+|.+.+.+ .+ -+.||+..|.+..+++.||+. .+|++||||++|+|+....
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 543 233333322 22 368999999999999999985 5799999999999988753
No 78
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.66 E-value=7.4e-16 Score=126.10 Aligned_cols=111 Identities=27% Similarity=0.457 Sum_probs=96.3
Q ss_pred Cc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHHHhcCCCc
Q 014225 44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPWL 121 (428)
Q Consensus 44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-~~~~~~~~~~~~~~ 121 (428)
+| +.+.+|+.+++++++||+++|+||++||++|+..++.|.++.+++++.+ +.+++|+.|.. .+.++++++++++.
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 46 7889999999999999999999999999999999999999999997554 99999999987 89999999988743
Q ss_pred eeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 122 AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 122 ~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
...+.+.. ..+.+.|++.++|+++++|+ +|+++..
T Consensus 79 ~~~~~~~~--~~~~~~~~~~~~P~~~l~d~---~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPD--GELAKAYGVRGLPTTFLIDR---DGRIRAR 113 (116)
T ss_pred cceEEcCc--chHHHhcCcCccceEEEECC---CCcEEEE
Confidence 33332332 78999999999999999999 9988754
No 79
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.5e-15 Score=150.33 Aligned_cols=244 Identities=20% Similarity=0.268 Sum_probs=147.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+++++|.||++||++|.+..|.+.++.+.+++. +.+..| |.+.. ..+++.|+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~v--d~~~~----------------------~~~~~~y~ 98 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAV--DCDEH----------------------KDLCEKYG 98 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEe--Cchhh----------------------HHHHHhcC
Confidence 4579999999999999999999999999999873 445544 43333 89999999
Q ss_pred CCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC--cccCCCCCc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG--YLLGHPPDE 217 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~--f~l~~~g~~ 217 (428)
+.++|++.++.+ +..++.... ....+.+..... ..+...+....+. +.++..+-
T Consensus 99 i~gfPtl~~f~~---~~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~- 154 (383)
T KOG0191|consen 99 IQGFPTLKVFRP---GKKPIDYSG------------PRNAESLAEFLI--------KELEPSVKKLVEGEVFELTKDNF- 154 (383)
T ss_pred CccCcEEEEEcC---CCceeeccC------------cccHHHHHHHHH--------HhhccccccccCCceEEccccch-
Confidence 999999999997 422322211 111111111111 0111111111111 11111111
Q ss_pred eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225 218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 297 (428)
Q Consensus 218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~ 297 (428)
. ..-......+++.|++|||++|+.+.|.+.++...++.. ..+.+..+..+.
T Consensus 155 ~-~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~--------~~v~~~~~d~~~------------------- 206 (383)
T KOG0191|consen 155 D-ETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK--------ENVELGKIDATV------------------- 206 (383)
T ss_pred h-hhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC--------cceEEEeeccch-------------------
Confidence 0 001112456899999999999999999999999988642 257777776652
Q ss_pred CCcchhHHHHhcCcCccceEEEECCCCc-EEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC--CCCcccccc-
Q 014225 298 GDPTIKELTKYFDVQGIPCLVIIGPEGK-TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL--PRSEFHIGH- 373 (428)
Q Consensus 298 ~~d~~~~~~~~~~v~~~P~~~lid~~G~-i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~--~~~~~~~~~- 373 (428)
...++..++|.++|++.++-++.. +.+..+ .+..+.+...+++..... +..+.....
T Consensus 207 ----~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~---------------~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~ 267 (383)
T KOG0191|consen 207 ----HKSLASRLEVRGYPTLKLFPPGEEDIYYYSG---------------LRDSDSIVSFVEKKERRNIPEPELKEIEDK 267 (383)
T ss_pred ----HHHHhhhhcccCCceEEEecCCCcccccccc---------------cccHHHHHHHHHhhcCCCCCCcccccccCc
Confidence 267889999999999999955556 333322 233455666665554431 222221111
Q ss_pred ----ccceee----------eeccCCCCCcccccccCCCCce
Q 014225 374 ----RHELNL----------VSEGTGGGPFICCDCDEQGSGW 401 (428)
Q Consensus 374 ----~~~~~~----------~~~~~~~~~~~c~~C~~~g~~~ 401 (428)
.+.+.. ..+-....++||.||....+.|
T Consensus 268 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (383)
T KOG0191|consen 268 DTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVY 309 (383)
T ss_pred cccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhH
Confidence 111110 0123456688999998877655
No 80
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.65 E-value=4.2e-16 Score=140.21 Aligned_cols=116 Identities=22% Similarity=0.376 Sum_probs=93.4
Q ss_pred cccccccCc-ccc-CCCC--EEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225 37 LLASKDRDY-LLN-QHGT--QVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 111 (428)
Q Consensus 37 ~~g~~~pdf-l~~-~~G~--~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~ 111 (428)
.+|+.+|+| +.+ .+|+ .+++++++||+++|+|| ++||++|..++|.|++++++|++.| +++++||.|... ..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~-~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF-VH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH-HH
Confidence 579999999 887 5776 68888999999999999 9999999999999999999999887 999999998753 23
Q ss_pred HHHHhc------CCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225 112 NNYRAC------MPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 112 ~~~~~~------~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~ 162 (428)
++|.+. +++.. ++|.+ ..+++.||+. ..|+++|||+ +|+|+...
T Consensus 80 ~~~~~~~~~~~~l~fpl--lsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~---~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPM--LGDPT--GVLTRNFGVLIEEAGLADRGTFVIDP---EGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCcceeE--EECCc--cHHHHHhCCcccCCCceeeEEEEECC---CCEEEEEE
Confidence 333332 23221 23443 7999999986 4699999999 99998764
No 81
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.64 E-value=1.1e-15 Score=130.72 Aligned_cols=116 Identities=22% Similarity=0.296 Sum_probs=96.5
Q ss_pred cccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC
Q 014225 41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 118 (428)
Q Consensus 41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~ 118 (428)
++|+| +.+.+|+++++++++||+++|+|| ++||++|...+|.|++++++++..+ +.+++|+.|. .+..+++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhcc
Confidence 37899 999999999999999999999999 7899999999999999999998766 9999999874 45678888877
Q ss_pred -CCceeccCChHHHHHHHhhcCCCCCc---------eEEEEcCCCCCCCcccccch
Q 014225 119 -PWLAVPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDGV 164 (428)
Q Consensus 119 -~~~~~~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~dG~i~~~~~~ 164 (428)
+.....+.|.+ ..+.+.|++...| ++++||+ +|++++....
T Consensus 78 ~~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~---~g~i~~~~~~ 128 (140)
T cd02971 78 GGLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDP---DGKIRYVEVE 128 (140)
T ss_pred cCCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECC---CCcEEEEEec
Confidence 43222233444 6899999988665 8999999 9999877443
No 82
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.64 E-value=1.8e-15 Score=133.02 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=80.0
Q ss_pred cCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225 204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 283 (428)
Q Consensus 204 ~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~ 283 (428)
.+.|+|.+ .+|+ .+++++++ +|+||++|||+|++++|.|++++++| +++|++|++|...+
T Consensus 53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------------g~~Vi~Vs~D~~~~-- 112 (181)
T PRK13728 53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------------GFSVFPYTLDGQGD-- 112 (181)
T ss_pred CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------------CCEEEEEEeCCCCC--
Confidence 35667875 5888 99999997 77799999999999999999999887 37999999986532
Q ss_pred HHHHhcCCccccccCCc-chhHHHHhcCc--CccceEEEECCCCcEEe
Q 014225 284 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 284 ~~~~~~~~~~~~~~~~d-~~~~~~~~~~v--~~~P~~~lid~~G~i~~ 328 (428)
..||...| ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 57888764 55677889995 69999999999999864
No 83
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.64 E-value=8.1e-16 Score=128.63 Aligned_cols=104 Identities=19% Similarity=0.399 Sum_probs=87.4
Q ss_pred cCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHHHhcCCC
Q 014225 43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPW 120 (428)
Q Consensus 43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-~~~~~~~~~~~~~ 120 (428)
|+| +++.+|+.+++++++||+++|+||++||++|+.++|.|++++++ +.+++|+.|.+ .+.++++.++++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 788 99999999999999999999999999999999999999999876 45788887764 7888899988763
Q ss_pred ceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225 121 LAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 121 ~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~ 160 (428)
.+++ .+.+ ..+.+.|++.++|+++||++ +| ++.
T Consensus 74 -~~~~~~d~~--~~~~~~~~i~~~P~~~vid~---~g-i~~ 107 (123)
T cd03011 74 -GFPVINDPD--GVISARWGVSVTPAIVIVDP---GG-IVF 107 (123)
T ss_pred -CccEEECCC--cHHHHhCCCCcccEEEEEcC---CC-eEE
Confidence 2332 1332 68999999999999999998 88 554
No 84
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.63 E-value=1.6e-15 Score=130.99 Aligned_cols=114 Identities=20% Similarity=0.341 Sum_probs=91.6
Q ss_pred cccCc-cccCCCCEEecccCC-CC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 41 KDRDY-LLNQHGTQVKVSDLE-GK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 41 ~~pdf-l~~~~G~~v~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
.+|+| |.+.+|++++++++. +| +|+++||++||++|+.++|.|+++++++++.+ +.+++|+.|.... ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKG 77 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHh
Confidence 37899 999999999999875 45 55666679999999999999999999999877 9999999886644 4577776
Q ss_pred CCCceeccCChHHHHHHHhhcCCC-----------------------------CCceEEEEcCCCCCCCccccc
Q 014225 118 MPWLAVPYSDLETKKALNRKFDIE-----------------------------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 118 ~~~~~~~~~d~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~~~dG~i~~~~ 162 (428)
.++....+.|.+ ..+.+.|++. .+|+++|||+ +|+|+..+
T Consensus 78 ~~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~---~g~i~~~~ 146 (149)
T cd02970 78 KFLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGP---DGTILFAH 146 (149)
T ss_pred cCCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECC---CCeEEEEe
Confidence 664322233544 7899999984 7999999999 99887653
No 85
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3e-15 Score=127.91 Aligned_cols=118 Identities=23% Similarity=0.302 Sum_probs=103.3
Q ss_pred cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 114 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~ 114 (428)
.+|+.+||| |.+.+|++++|++++||.|||+|| ..++|.|..++-.+++.+.+|++.| .+|++||.|... +.++|
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~-~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPK-SHKKF 81 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHH-HHHHH
Confidence 369999999 999999999999999999999999 8999999999999999999999987 999999998765 48899
Q ss_pred HhcCCCceeccCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCccccc
Q 014225 115 RACMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~~ 162 (428)
.++++..+...+|.+ ..++++||+- ..++++|||+ +|+|++..
T Consensus 82 ~~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~---dG~I~~~~ 136 (157)
T COG1225 82 AEKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP---DGKIRYVW 136 (157)
T ss_pred HHHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECC---CCeEEEEe
Confidence 999886544455665 7899999972 4689999999 99987653
No 86
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.60 E-value=2.4e-15 Score=137.62 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=97.6
Q ss_pred cccccccCc-cccCCCCEEecccCCCCE-EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hHHHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGKV-TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LNAFN 112 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~--~~~~~ 112 (428)
.+|+.+||| +.+.+|+.+.+++++||. ||++||++|||+|..+++.|++++++|+++| +++++||+|.. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 689999999 999999988889999996 5789999999999999999999999999988 99999999975 34566
Q ss_pred HHHhcC---CCceeccCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225 113 NYRACM---PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 113 ~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~ 162 (428)
+++++. +..+..++|.+ ..+++.||+. ..|+++|||+ +|+|+...
T Consensus 81 ~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~---dG~Ir~~~ 135 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDD---KGTIRLIM 135 (215)
T ss_pred HhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECC---CCEEEEEE
Confidence 666642 32222233443 7899999973 6899999999 99998663
No 87
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.60 E-value=3.8e-15 Score=132.48 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=71.5
Q ss_pred CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC------
Q 014225 205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 277 (428)
Q Consensus 205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d------ 277 (428)
..++|++ +.+|+ .+++++++||+|||.|||+||++|. .++.|++++++|+++ ++.|++|+++
T Consensus 4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence 4678999 99999 9999999999999999999999996 689999999999877 8999999986
Q ss_pred -CCHHHHHHHHh-cCCccccccC
Q 014225 278 -RDQTSFESYFG-TMPWLALPFG 298 (428)
Q Consensus 278 -~~~~~~~~~~~-~~~~~~~~~~ 298 (428)
.+.+++++|++ +++ ++||+.
T Consensus 73 ~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 73 PGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred CCCHHHHHHHHHHccC-CCceeE
Confidence 35678889987 444 677775
No 88
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.60 E-value=1.1e-14 Score=125.00 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=78.7
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 303 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 303 (428)
..||+++|+||++||++|+.+.|.|.+++++|.+. +.|+.|++|.+. ..
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~----------~~~v~v~vd~~~---------------------~~ 66 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ----------VNFVMLNVDNPK---------------------WL 66 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC----------eeEEEEEcCCcc---------------------cH
Confidence 46899999999999999999999999999988644 789999888542 14
Q ss_pred HHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCC
Q 014225 304 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 366 (428)
Q Consensus 304 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~ 366 (428)
.+++.|+|.++|++++||++|+++.+..+. .. .++|.+.|++++++.+.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~-----------~~---~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQSIGL-----------QP---KQVLAQNLDALVAGEPL 115 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCC-----------CC---HHHHHHHHHHHHcCCCC
Confidence 678899999999999999999999875431 12 25677778887776543
No 89
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.60 E-value=4.7e-15 Score=130.34 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=77.5
Q ss_pred cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
....++| | .+|+++++++++ +|+||++||++|++++|.|+++++++ + +++++|++|...+
T Consensus 52 ~~~~~~f~l--~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~-------- 112 (181)
T PRK13728 52 KPAPRWFRL--SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD-------- 112 (181)
T ss_pred CCCCCccCC--CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC--------
Confidence 4556777 5 499999999997 77899999999999999999999997 4 8999999986642
Q ss_pred CCCceeccCChHHHHHHHhhcCC--CCCceEEEEcCCCCCCCcccccch
Q 014225 118 MPWLAVPYSDLETKKALNRKFDI--EGIPCLVVLQPYDDKDDATLHDGV 164 (428)
Q Consensus 118 ~~~~~~~~~d~~~~~~l~~~~~v--~~~P~~~lid~~~~dG~i~~~~~~ 164 (428)
. .+|..-.+....+.+.|++ .++|++||||+ +|+++.....
T Consensus 113 ~---~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~---~G~i~~~~~~ 155 (181)
T PRK13728 113 T---AFPEALPAPPDVMQTFFPNIPVATPTTFLVNV---NTLEALPLLQ 155 (181)
T ss_pred C---CCceEecCchhHHHHHhCCCCCCCCeEEEEeC---CCcEEEEEEE
Confidence 1 2222111111567788985 69999999999 9988654333
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.60 E-value=2.9e-15 Score=166.08 Aligned_cols=118 Identities=23% Similarity=0.231 Sum_probs=97.9
Q ss_pred cccccccCc-ccc--CCCCEEec-ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec---CC--C
Q 014225 37 LLASKDRDY-LLN--QHGTQVKV-SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS---DE--D 107 (428)
Q Consensus 37 ~~g~~~pdf-l~~--~~G~~v~l-~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~---D~--~ 107 (428)
..|..+|+| ..+ .+|+++++ ++++||+|+|+|||+||++|+.++|.|++++++|++++ +.+++|+. |. +
T Consensus 392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKD 469 (1057)
T ss_pred ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEeccccccccc
Confidence 358899999 544 78999998 68999999999999999999999999999999998876 99999974 32 4
Q ss_pred hHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 108 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
.+.++++++++++......|.+ ..+++.|++.++|+++|||+ +|+++.+
T Consensus 470 ~~~~~~~~~~~~i~~pvv~D~~--~~~~~~~~V~~iPt~ilid~---~G~iv~~ 518 (1057)
T PLN02919 470 LEAIRNAVLRYNISHPVVNDGD--MYLWRELGVSSWPTFAVVSP---NGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHHhCCCccEEECCc--hHHHHhcCCCccceEEEECC---CCeEEEE
Confidence 5778888887764322222433 68899999999999999999 9999876
No 91
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.59 E-value=4e-15 Score=135.37 Aligned_cols=117 Identities=21% Similarity=0.396 Sum_probs=93.6
Q ss_pred cccccccCc-cccCCCCEEecccCCCCEEEE-EEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH-
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF- 111 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~- 111 (428)
.+|+.+|+| +.+..| .+++++++||.++| +||++||++|..+++.|++++++|+++| +++++||.|.... .|
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 368999999 888888 69999999996655 6899999999999999999999999887 9999999987542 33
Q ss_pred HHHHhcCCC-ceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225 112 NNYRACMPW-LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 112 ~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~ 161 (428)
+++.++.+. ..+| ++|.+ ..+++.||+. .+|+++|||+ +|+|+..
T Consensus 80 ~~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~---~G~I~~~ 132 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDP---NQIVRWM 132 (202)
T ss_pred HhHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECC---CCEEEEE
Confidence 334444442 2333 33444 7999999984 5899999999 9988765
No 92
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.58 E-value=7.5e-15 Score=131.36 Aligned_cols=120 Identities=27% Similarity=0.370 Sum_probs=93.6
Q ss_pred ccccccccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225 36 SLLASKDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 110 (428)
Q Consensus 36 ~~~g~~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~ 110 (428)
..+|.++|+| +. +.+..+++|++++||+++|+|| ++||++|..+++.|++++++|++.| +++++||.|....
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~- 78 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFT- 78 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHH-
Confidence 3579999999 43 3445578889999999999999 9999999999999999999999887 9999999987643
Q ss_pred HHHHHhcC----CCceeccCChHHHHHHHhhcCC----CCC--ceEEEEcCCCCCCCcccccc
Q 014225 111 FNNYRACM----PWLAVPYSDLETKKALNRKFDI----EGI--PCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 111 ~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v----~~~--P~~~lid~~~~dG~i~~~~~ 163 (428)
.++|.+.. +..+...+|.+ ..+++.||+ .++ |+++|||+ +|+|++...
T Consensus 79 ~~a~~~~~~~~~~l~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfIID~---~G~I~~~~~ 136 (187)
T PRK10382 79 HKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV 136 (187)
T ss_pred HHHHHHhhccccCCceeEEEcCc--hHHHHHcCCCcccCCceeeEEEEECC---CCEEEEEEE
Confidence 44554331 22111223443 899999998 356 99999999 999987743
No 93
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.4e-14 Score=139.74 Aligned_cols=78 Identities=21% Similarity=0.343 Sum_probs=56.7
Q ss_pred CCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCCh
Q 014225 49 QHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 128 (428)
Q Consensus 49 ~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~ 128 (428)
++.+.+.-.-.....++|.|||+||++|++..|++.+.++.+++.++.+.+.-| |.+.+
T Consensus 30 Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV--Dat~~------------------- 88 (493)
T KOG0190|consen 30 LTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV--DATEE------------------- 88 (493)
T ss_pred EecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe--ecchh-------------------
Confidence 334334443344578999999999999999999999999999998766666654 44433
Q ss_pred HHHHHHHhhcCCCCCceEEEEc
Q 014225 129 ETKKALNRKFDIEGIPCLVVLQ 150 (428)
Q Consensus 129 ~~~~~l~~~~~v~~~P~~~lid 150 (428)
..++..|+|.++||+.++.
T Consensus 89 ---~~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 89 ---SDLASKYEVRGYPTLKIFR 107 (493)
T ss_pred ---hhhHhhhcCCCCCeEEEEe
Confidence 5666666666666666666
No 94
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.55 E-value=3.4e-14 Score=115.10 Aligned_cols=77 Identities=18% Similarity=0.375 Sum_probs=64.8
Q ss_pred ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
+.+|++|+|+|||+||++|+.+.|.|.++++++ . ++.++.|++|.+.+ .
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~----------~v~~~~vd~d~~~~--------------------~ 60 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N----------DVVFLLVNGDENDS--------------------T 60 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C----------CCEEEEEECCCChH--------------------H
Confidence 346899999999999999999999999999988 2 47888898886521 2
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
.++++.|+|.++||++++ ++|+++.+..
T Consensus 61 ~~l~~~~~V~~~Pt~~~~-~~G~~v~~~~ 88 (103)
T cd02985 61 MELCRREKIIEVPHFLFY-KDGEKIHEEE 88 (103)
T ss_pred HHHHHHcCCCcCCEEEEE-eCCeEEEEEe
Confidence 478899999999998888 9999987743
No 95
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.55 E-value=2.3e-14 Score=133.87 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=93.2
Q ss_pred ccccccccCc-ccc-CCCC--EEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--
Q 014225 36 SLLASKDRDY-LLN-QHGT--QVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-- 107 (428)
Q Consensus 36 ~~~g~~~pdf-l~~-~~G~--~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-- 107 (428)
.++|+.+||| +.+ .+|+ +++++++ +||.++|+|| ++||++|..+++.|++++++|++.| ++|++||.|..
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~ 145 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFS 145 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence 4689999999 876 4554 6899998 8988777777 9999999999999999999999988 99999999873
Q ss_pred hHHHHHH-HhcCCC--ceec-cCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCcccccc
Q 014225 108 LNAFNNY-RACMPW--LAVP-YSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 108 ~~~~~~~-~~~~~~--~~~~-~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~~ 163 (428)
...|.+. .++.+. +.+| ++|.+ ..+++.||+. ..|+++|||+ +|+|++...
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~---dG~I~~~~~ 205 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDK---AGVVKHVAV 205 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECC---CCEEEEEEE
Confidence 2334332 222111 2222 33443 7899999985 5899999999 999987643
No 96
>PRK15000 peroxidase; Provisional
Probab=99.54 E-value=1.5e-14 Score=131.21 Aligned_cols=120 Identities=21% Similarity=0.292 Sum_probs=91.8
Q ss_pred ccccccccCc-cccC--CCCE---EecccC-CCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225 36 SLLASKDRDY-LLNQ--HGTQ---VKVSDL-EGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 107 (428)
Q Consensus 36 ~~~g~~~pdf-l~~~--~G~~---v~l~~~-~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~ 107 (428)
+++|..+||| +.+. +|+. ++++++ +||+++|+||+. ||+.|..+++.|++++++|+++| ++|++||.|..
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence 3579999999 8875 3453 455555 899999999985 99999999999999999999887 99999999965
Q ss_pred h--HHHHH-HHhcCCC--ceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225 108 L--NAFNN-YRACMPW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 108 ~--~~~~~-~~~~~~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~ 162 (428)
. ..|.+ +.++.+. +.+| ++|.+ ..+++.||+. .+|+++|||+ +|+|+...
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~---~G~I~~~~ 141 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDA---NGIVRHQV 141 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECC---CCEEEEEE
Confidence 3 33333 2333321 1233 23443 7899999987 7999999999 99998753
No 97
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.54 E-value=2.2e-14 Score=131.46 Aligned_cols=118 Identities=15% Similarity=0.268 Sum_probs=93.1
Q ss_pred cccccccCc-cccCCCCEEec-ccCCCCEEE-EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH
Q 014225 37 LLASKDRDY-LLNQHGTQVKV-SDLEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF 111 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l-~~~~gk~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~ 111 (428)
.+|+.+||| +.+.+|+ +.+ ++++||.++ ++||++||+.|..+++.|++++++|+++| +++++||+|.... .|
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEW 84 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHH
Confidence 579999999 9999997 555 558999655 58899999999999999999999999987 9999999997654 45
Q ss_pred HHHHhc---CCCceeccCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225 112 NNYRAC---MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 112 ~~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~ 162 (428)
.+++++ .+..+..++|.+ ..+++.||+. ..|+++|||+ +|+|....
T Consensus 85 ~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~ 140 (215)
T PRK13191 85 VMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDD---KGTVRLIL 140 (215)
T ss_pred HhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECC---CCEEEEEE
Confidence 555553 222222233444 7999999973 4799999999 99998764
No 98
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.6e-14 Score=122.63 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=113.2
Q ss_pred hhhccCCCCccc-CC-CCC--ceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225 200 NLLTNHDRGYLL-GH-PPD--EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274 (428)
Q Consensus 200 ~~~g~~~p~f~l-~~-~g~--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i 274 (428)
.++|+++|+|+. .. .|. .+++++++.||+++|+|| +...+.|..++..+.+++.+|+.+ +++|++|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVigv 73 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIGV 73 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEEE
Confidence 467999999999 44 452 279999999999999999 578999999999999999999988 9999999
Q ss_pred EcCC--CHHHHHHHHhcCCc---cccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225 275 STDR--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 343 (428)
Q Consensus 275 s~d~--~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 343 (428)
|+|. +..+|.+...+... ++||+..|.+.++++.||+- ....+||||++|+|+.....++ .
T Consensus 74 S~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~--~------ 145 (194)
T COG0450 74 STDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPL--T------ 145 (194)
T ss_pred ecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecC--C------
Confidence 9996 35577777665554 78999999999999999984 4668999999999988743222 1
Q ss_pred CCChHHHHHHHHHHHHH
Q 014225 344 PFTEAKLEFLEKQMEEE 360 (428)
Q Consensus 344 p~~~~~~~~L~~~l~~~ 360 (428)
..+.++++...|+.+
T Consensus 146 --iGRn~dEilR~idAl 160 (194)
T COG0450 146 --IGRNVDEILRVIDAL 160 (194)
T ss_pred --CCcCHHHHHHHHHHH
Confidence 133456666666543
No 99
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.53 E-value=4.6e-14 Score=128.58 Aligned_cols=117 Identities=15% Similarity=0.254 Sum_probs=89.4
Q ss_pred ccccccCc-cccCCCCEEecccCCC-C-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEG-K-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AFN 112 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~g-k-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~~ 112 (428)
+|+.+|+| +.+.+| .+++++++| | ++|++||++||+.|..+++.|++++++|++.| +++++||+|.... .|.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 48899999 988888 599999988 6 45668999999999999999999999999987 9999999996532 222
Q ss_pred HHHhc---CCCceeccCChHHHHHHHhhcCCC----C----CceEEEEcCCCCCCCccccc
Q 014225 113 NYRAC---MPWLAVPYSDLETKKALNRKFDIE----G----IPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 113 ~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~----~----~P~~~lid~~~~dG~i~~~~ 162 (428)
+.++. .++.+..++|.+ ..+++.||+. + .|+++|||+ +|+|+...
T Consensus 78 ~~i~~~~~~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~---~G~I~~~~ 133 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDP---DKKIRLIL 133 (203)
T ss_pred hhHHHhcCCCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECC---CCeEEEEE
Confidence 22222 232222233444 7999999975 2 457999999 99988663
No 100
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.53 E-value=4.1e-14 Score=123.26 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=100.8
Q ss_pred hccCCCCccc-CCC---CCceecccc-cCCcEEEEEEe-ccCChhHHhh-hHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 014225 202 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF 273 (428)
Q Consensus 202 ~g~~~p~f~l-~~~---g~~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~ 273 (428)
+|..+|+|++ +.+ |. .+++++ ++||+++|+|| +.|||.|..+ ++.|++.+++|.+. ++ .|++
T Consensus 1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC 70 (155)
T ss_pred CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence 4789999999 775 88 999999 68987777777 6899999999 99999999999877 78 6999
Q ss_pred EEcCCCHHHHHHHHhcCCc-cccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEeccc
Q 014225 274 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 274 is~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 331 (428)
||.| +....++|..+.+. .+||++.|.+.++++.||+. ..+.+|||| +|+|++...
T Consensus 71 iS~D-~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 71 VSVN-DPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred EECC-CHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 9999 56678888888775 48999999999999999982 146789999 799998753
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.52 E-value=2.9e-14 Score=126.16 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=77.9
Q ss_pred CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEE------EEEecCCChHHHHHHHh----c--
Q 014225 50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEV------VFVSSDEDLNAFNNYRA----C-- 117 (428)
Q Consensus 50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i------i~vs~D~~~~~~~~~~~----~-- 117 (428)
+.++++.++++||+++|+|||+||++|+.++|.|.++ ++.| +.+ ++||.|+.......|++ +
T Consensus 48 ~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~ 121 (184)
T TIGR01626 48 VYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK 121 (184)
T ss_pred cceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhc
Confidence 4446777899999999999999999999999999988 3344 778 99999886544444444 3
Q ss_pred --CCCceeccCChHHHHHHHhhcCCCCCceE-EEEcCCCCCCCccccc
Q 014225 118 --MPWLAVPYSDLETKKALNRKFDIEGIPCL-VVLQPYDDKDDATLHD 162 (428)
Q Consensus 118 --~~~~~~~~~d~~~~~~l~~~~~v~~~P~~-~lid~~~~dG~i~~~~ 162 (428)
++|..+.. |.+ ..+...|++.++|++ ++||+ +|+++...
T Consensus 122 ~~~P~~~vll-D~~--g~v~~~~gv~~~P~T~fVIDk---~GkVv~~~ 163 (184)
T TIGR01626 122 KENPWSQVVL-DDK--GAVKNAWQLNSEDSAIIVLDK---TGKVKFVK 163 (184)
T ss_pred ccCCcceEEE-CCc--chHHHhcCCCCCCceEEEECC---CCcEEEEE
Confidence 33432323 443 678889999999988 89999 99998763
No 102
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.51 E-value=1e-13 Score=112.84 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=65.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++|||+|||+||++|+.+.|.|.++.+++.+. +.++.|++|.. .+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~~-----------------------~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDEV-----------------------PD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCCC-----------------------HH
Confidence 4678999999999999999999999999998754 68888888865 68
Q ss_pred HHHhcCcCccceEEEECCCCcEEeccc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
++..|+|.++||++++ ++|+.+.+..
T Consensus 60 la~~~~V~~iPTf~~f-k~G~~v~~~~ 85 (114)
T cd02954 60 FNKMYELYDPPTVMFF-FRNKHMKIDL 85 (114)
T ss_pred HHHHcCCCCCCEEEEE-ECCEEEEEEc
Confidence 9999999999999999 8999998863
No 103
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.51 E-value=7.5e-14 Score=120.65 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=62.3
Q ss_pred CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccc
Q 014225 215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 294 (428)
Q Consensus 215 g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~ 294 (428)
|+ .+.++ +..+|+|||+||++|++++|.|+++++++ ++.|++|++|.... ..
T Consensus 44 G~-~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~------------~~~Vi~Vs~d~~~~-----------~~ 95 (153)
T TIGR02738 44 GR-HANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF------------GLPVYAFSLDGQGL-----------TG 95 (153)
T ss_pred ch-hhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc------------CCcEEEEEeCCCcc-----------cc
Confidence 44 45544 44599999999999999999999999876 36799999986431 12
Q ss_pred cccCCcchhHH-HHhc---CcCccceEEEECCCCcEEe
Q 014225 295 LPFGDPTIKEL-TKYF---DVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 295 ~~~~~d~~~~~-~~~~---~v~~~P~~~lid~~G~i~~ 328 (428)
||...+..... ...| ++.++|++||||++|+++.
T Consensus 96 fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 96 FPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred cccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 33333222333 3455 8899999999999988644
No 104
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.3e-14 Score=117.13 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=65.7
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++|+|+|||+||+||+.+.|.|+++..+|.++ +.+..|++|.. .++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence 578999999999999999999999999999765 89999999966 689
Q ss_pred HHhcCcCccceEEEECCCCcEEeccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
+..|+|.++||+++| ++|..+.+..
T Consensus 108 a~~Y~I~avPtvlvf-knGe~~d~~v 132 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVF-KNGEKVDRFV 132 (150)
T ss_pred HhhcceeeeeEEEEE-ECCEEeeeec
Confidence 999999999999999 9999887643
No 105
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.50 E-value=1.5e-13 Score=111.16 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=62.0
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.|++++|+|||+||++|+.+.|.|.++++++++. .+.++.+++| + .+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~-----------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-T-----------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-C-----------------------HH
Confidence 4789999999999999999999999999988643 4778888877 4 45
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++.|+|+++||++++ ++|+++.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 63 TLKRYRGKCEPTFLFY-KNGELVAVI 87 (102)
T ss_pred HHHHcCCCcCcEEEEE-ECCEEEEEE
Confidence 7899999999999888 799988774
No 106
>PRK13189 peroxiredoxin; Provisional
Probab=99.48 E-value=1.5e-13 Score=126.59 Aligned_cols=118 Identities=19% Similarity=0.343 Sum_probs=90.6
Q ss_pred cccccccCc-cccCCCCEEeccc-CCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSD-LEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF 111 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~-~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~ 111 (428)
.+|+.+|+| +.+.+|+ +++++ ++|| ++|++||++||+.|..+++.|++++++|+++| ++|++||+|.... +|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHH
Confidence 479999999 9988885 77776 4999 55668899999999999999999999999887 9999999997543 23
Q ss_pred HHHH-hcCCC-ceec-cCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225 112 NNYR-ACMPW-LAVP-YSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 112 ~~~~-~~~~~-~~~~-~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~ 162 (428)
.+.+ +..+. ..+| ++|.+ ..+++.||+. .+|+++|||+ +|+|+...
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~ 142 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDP---KGIIRAIL 142 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECC---CCeEEEEE
Confidence 3322 22221 1222 33443 7899999975 5799999999 99987663
No 107
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.47 E-value=8.4e-14 Score=119.42 Aligned_cols=86 Identities=16% Similarity=0.310 Sum_probs=69.4
Q ss_pred cCCCCEEeccc--CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225 48 NQHGTQVKVSD--LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 125 (428)
Q Consensus 48 ~~~G~~v~l~~--~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~ 125 (428)
+++++...+++ .+||+++|+|||+||++|+.++|.|.++++++++. +.++.|++|....
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------- 65 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------- 65 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc----------------
Confidence 34444444443 37899999999999999999999999999998754 7888888875421
Q ss_pred CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
..+++.|++.++|+++|+++ +|+++.+
T Consensus 66 ------~~~~~~~~V~~iPt~v~~~~---~G~~v~~ 92 (142)
T cd02950 66 ------LPEIDRYRVDGIPHFVFLDR---EGNEEGQ 92 (142)
T ss_pred ------HHHHHHcCCCCCCEEEEECC---CCCEEEE
Confidence 46778899999999999998 9988755
No 108
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.47 E-value=2.9e-13 Score=111.17 Aligned_cols=74 Identities=16% Similarity=0.387 Sum_probs=64.6
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 303 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 303 (428)
..|++++|+||++||++|+.+.|.+.++.+++++. ++.++.|++|.+ .
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~ 69 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGHE-----------------------R 69 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEecccc-----------------------H
Confidence 46799999999999999999999999999999754 578888887754 5
Q ss_pred HHHHhcCcCccceEEEECCCCcEEecc
Q 014225 304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 304 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
.+++.|+|.++||++++ ++|+++.+.
T Consensus 70 ~l~~~~~V~~~Pt~~i~-~~g~~~~~~ 95 (111)
T cd02963 70 RLARKLGAHSVPAIVGI-INGQVTFYH 95 (111)
T ss_pred HHHHHcCCccCCEEEEE-ECCEEEEEe
Confidence 78899999999999999 699887764
No 109
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.47 E-value=2e-13 Score=124.13 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=91.3
Q ss_pred cccccccCc-ccc----CCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225 37 LLASKDRDY-LLN----QHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 110 (428)
Q Consensus 37 ~~g~~~pdf-l~~----~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~ 110 (428)
.+|+.+||| +.+ .+|++++|++++||+++|+|| +.||+.|..+++.|.+++++|++.| +++++||.|.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH
Confidence 469999999 654 466899999999999999999 5889999999999999999999987 99999999876532
Q ss_pred HH--HHHh-c--CCCceecc-CChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225 111 FN--NYRA-C--MPWLAVPY-SDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 111 ~~--~~~~-~--~~~~~~~~-~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~ 161 (428)
.. ...+ . .+-+.+|+ .|.+ ..+++.||+. .+|+++|||+ +|+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~---~G~i~~~ 142 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDP---KGMLRQI 142 (199)
T ss_pred HHHHhChHhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECC---CCEEEEE
Confidence 11 1111 1 11122332 2443 8999999985 4689999999 9998865
No 110
>PHA02278 thioredoxin-like protein
Probab=99.45 E-value=4.3e-13 Score=108.18 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=63.5
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|+|||+||++|+.+.|.+.++.+++.. .+.++.|++|.+.. | ..+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence 568999999999999999999999999877543 35788888885420 0 256
Q ss_pred HHHhcCcCccceEEEECCCCcEEeccc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
+++.|+|.++||++++ ++|+.+.+..
T Consensus 64 l~~~~~I~~iPT~i~f-k~G~~v~~~~ 89 (103)
T PHA02278 64 AVKLFDIMSTPVLIGY-KDGQLVKKYE 89 (103)
T ss_pred HHHHCCCccccEEEEE-ECCEEEEEEe
Confidence 8999999999999999 8999998753
No 111
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.45 E-value=4.8e-13 Score=108.94 Aligned_cols=72 Identities=24% Similarity=0.450 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+++|+|+|||+||+||+.+.|.|.++++++++. +.++-|++|.. ..+++.|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~------------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV------------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 4689999999999999999999999999999764 67777777655 78899999
Q ss_pred CCCCceEEEEcCCCCCCCccccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
|.++||++++. +|+.+...
T Consensus 66 V~~iPTf~~fk----~G~~v~~~ 84 (114)
T cd02954 66 LYDPPTVMFFF----RNKHMKID 84 (114)
T ss_pred CCCCCEEEEEE----CCEEEEEE
Confidence 99999999999 79888664
No 112
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.44 E-value=7.6e-13 Score=117.76 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=68.2
Q ss_pred cccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHH
Q 014225 41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFN 112 (428)
Q Consensus 41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~~~ 112 (428)
.+.+| +.+.+|++++|++++||+|||.|||+||++|. .+|.|++++++|++.| ++|++|+.+ .+.++++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHH
Confidence 46788 89999999999999999999999999999996 6999999999999988 999999985 3567788
Q ss_pred HHHh-cCCC
Q 014225 113 NYRA-CMPW 120 (428)
Q Consensus 113 ~~~~-~~~~ 120 (428)
+|.+ +++.
T Consensus 81 ~f~~~~~g~ 89 (183)
T PRK10606 81 TYCRTTWGV 89 (183)
T ss_pred HHHHHccCC
Confidence 8987 5653
No 113
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.44 E-value=3.8e-13 Score=108.94 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=61.6
Q ss_pred cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225 58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 137 (428)
Q Consensus 58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 137 (428)
+.+||+|+|+|||+||++|+.++|.|+++++++ . + +.++.|+.|.+.. ...+++.
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~--v~~~~vd~d~~~~---------------------~~~l~~~ 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-D--VVFLLVNGDENDS---------------------TMELCRR 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-C--CEEEEEECCCChH---------------------HHHHHHH
Confidence 346899999999999999999999999999998 2 2 7788887765422 1578899
Q ss_pred cCCCCCceEEEEcCCCCCCCcccc
Q 014225 138 FDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 138 ~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|+|.++||++++ + +|+++.+
T Consensus 67 ~~V~~~Pt~~~~-~---~G~~v~~ 86 (103)
T cd02985 67 EKIIEVPHFLFY-K---DGEKIHE 86 (103)
T ss_pred cCCCcCCEEEEE-e---CCeEEEE
Confidence 999999998888 4 8977644
No 114
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=4.2e-13 Score=107.98 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=58.2
Q ss_pred cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
++++||+++|.|||+||++|+.+.|.|++++++++ ++.++.|..+..
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~---------------------- 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESSI---------------------- 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCCC----------------------
Confidence 34689999999999999999999999999999885 356777765521
Q ss_pred hhHHHHhcCcCccceEEEECCCCcE
Q 014225 302 IKELTKYFDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 302 ~~~~~~~~~v~~~P~~~lid~~G~i 326 (428)
...+++.|+|.++||+++++ +|.+
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~-~g~~ 84 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFN-STPR 84 (100)
T ss_pred CHHHHHhcCCeecCEEEEEc-CCce
Confidence 26789999999999999995 4533
No 115
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.44 E-value=8.6e-13 Score=105.24 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=62.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+|++++|+||++||++|+.+.|.+.++++.+.+. +.++.|++|.. ..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~-----------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ----------FVLAKVNCDAQ-----------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc----------EEEEEEeccCC-----------------------HH
Confidence 4789999999999999999999999999988643 77788887754 67
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++.|+|.++|++++++ +|+++.+.
T Consensus 58 l~~~~~i~~~Pt~~~~~-~g~~~~~~ 82 (96)
T cd02956 58 IAQQFGVQALPTVYLFA-AGQPVDGF 82 (96)
T ss_pred HHHHcCCCCCCEEEEEe-CCEEeeee
Confidence 89999999999999995 99887654
No 116
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.41 E-value=1.6e-12 Score=109.18 Aligned_cols=88 Identities=27% Similarity=0.459 Sum_probs=66.5
Q ss_pred CC-cEEEEEEeccCChhHHhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 225 VG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 225 ~g-k~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
.| |+++|+||++||++|+.+.+.+. ++.+.+++ ++.++.|++|.+.... . +.....
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~~ 71 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEAL 71 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCCc
Confidence 47 89999999999999999999885 55556653 4788889887653211 1 111222
Q ss_pred chhHHHHhcCcCccceEEEECCC-CcEEecccc
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR 332 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~ 332 (428)
...+++..|+|.++|+++++|++ |+++.+..+
T Consensus 72 ~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G 104 (125)
T cd02951 72 SEKELARKYRVRFTPTVIFLDPEGGKEIARLPG 104 (125)
T ss_pred cHHHHHHHcCCccccEEEEEcCCCCceeEEecC
Confidence 45789999999999999999999 899887543
No 117
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.41 E-value=3.9e-13 Score=116.22 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=63.2
Q ss_pred CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225 50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 129 (428)
Q Consensus 50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 129 (428)
.|+++.++++ .+|+|||+||++|++++|.|+++++++ + +.+++|++|.... ..++ ..+ +.+
T Consensus 43 ~G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp---~~~-~~~ 103 (153)
T TIGR02738 43 QGRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP---DPL-PAT 103 (153)
T ss_pred cchhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc---ccc-CCc
Confidence 4666666554 499999999999999999999999987 3 7799999886531 1122 111 111
Q ss_pred HHHHHHhhc---CCCCCceEEEEcCCCCCCCccc
Q 014225 130 TKKALNRKF---DIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 130 ~~~~l~~~~---~v~~~P~~~lid~~~~dG~i~~ 160 (428)
. ..+...| ++.++|++++||+ +|.++.
T Consensus 104 ~-~~~~~~~~~~~v~~iPTt~LID~---~G~~i~ 133 (153)
T TIGR02738 104 P-EVMQTFFPNPRPVVTPATFLVNV---NTRKAY 133 (153)
T ss_pred h-HHHHHHhccCCCCCCCeEEEEeC---CCCEEE
Confidence 1 2333455 8899999999999 987643
No 118
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=121.27 Aligned_cols=74 Identities=27% Similarity=0.468 Sum_probs=67.3
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 303 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 303 (428)
-+-++|||+||+|||++|+.++|.|+++..+|+++ |.++.|++|.+ .
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p 87 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------P 87 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------h
Confidence 34579999999999999999999999999999876 89999999976 6
Q ss_pred HHHHhcCcCccceEEEECCCCcEEeccc
Q 014225 304 ELTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 304 ~~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
.++..|||+++|++|+| ++|+.+.-+.
T Consensus 88 ~vAaqfgiqsIPtV~af-~dGqpVdgF~ 114 (304)
T COG3118 88 MVAAQFGVQSIPTVYAF-KDGQPVDGFQ 114 (304)
T ss_pred hHHHHhCcCcCCeEEEe-eCCcCccccC
Confidence 89999999999999999 9999998754
No 119
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.39 E-value=1.3e-12 Score=105.18 Aligned_cols=68 Identities=15% Similarity=0.347 Sum_probs=56.4
Q ss_pred ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225 57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 136 (428)
Q Consensus 57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 136 (428)
++++||+++|+|||+||++|+.++|.+.++++++++ +.++.|+.+. .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~~----------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-IK----------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-CC----------------------HHHHH
Confidence 357899999999999999999999999999999853 5566654331 11 57889
Q ss_pred hcCCCCCceEEEEcC
Q 014225 137 KFDIEGIPCLVVLQP 151 (428)
Q Consensus 137 ~~~v~~~P~~~lid~ 151 (428)
.|++.++||++++++
T Consensus 67 ~~~V~~~PT~~lf~~ 81 (100)
T cd02999 67 RYGVVGFPTILLFNS 81 (100)
T ss_pred hcCCeecCEEEEEcC
Confidence 999999999999985
No 120
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.7e-12 Score=104.84 Aligned_cols=70 Identities=31% Similarity=0.552 Sum_probs=62.7
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+|.++++|+|+||+||+.+.|.+.+|..+|. ++.++.|++|.. .+
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde~-----------------------~~ 65 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDEL-----------------------EE 65 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEecccC-----------------------Hh
Confidence 36899999999999999999999999999986 468888888852 78
Q ss_pred HHHhcCcCccceEEEECCCCcEEec
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
+++.|+|..+||++++ ++|+.+.+
T Consensus 66 ~~~~~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 66 VAKEFNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred HHHhcCceEeeEEEEE-ECCEEEEE
Confidence 9999999999999999 99988877
No 121
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.38 E-value=2.1e-12 Score=104.14 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=62.9
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 303 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 303 (428)
..+++++|.||++||++|+++.|.+.++++++++. +.++.|++|.+ .
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~----------~~~~~vd~~~~-----------------------~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV----------IRIGAVNCGDD-----------------------R 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc----------eEEEEEeCCcc-----------------------H
Confidence 34689999999999999999999999999998643 78888888855 5
Q ss_pred HHHHhcCcCccceEEEECCCCcEEecc
Q 014225 304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 304 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
.+++.|+|+++||++++ ++|+.+.+.
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~ 88 (101)
T cd03003 63 MLCRSQGVNSYPSLYVF-PSGMNPEKY 88 (101)
T ss_pred HHHHHcCCCccCEEEEE-cCCCCcccC
Confidence 78999999999999999 888766553
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.38 E-value=7e-12 Score=128.55 Aligned_cols=68 Identities=22% Similarity=0.473 Sum_probs=56.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|.|||+||++|+.+.|.+.++++.+.+.+.++.++.|+.+.. ..+++.|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE------------------------KDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc------------------------HHHHHhCC
Confidence 568999999999999999999999999999987654566666544332 67899999
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
+.++|+++++..
T Consensus 73 i~~~Pt~~~~~~ 84 (462)
T TIGR01130 73 VSGYPTLKIFRN 84 (462)
T ss_pred CccccEEEEEeC
Confidence 999999999984
No 123
>PRK09381 trxA thioredoxin; Provisional
Probab=99.37 E-value=3.7e-12 Score=104.16 Aligned_cols=71 Identities=23% Similarity=0.514 Sum_probs=62.6
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|+||++||++|+.+.|.|+++++++.+ ++.++.|++|.. ..+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 67 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT 67 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------hhH
Confidence 67899999999999999999999999999864 378888888855 457
Q ss_pred HHhcCcCccceEEEECCCCcEEecc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
++.|++.++|+++++ ++|+++.+.
T Consensus 68 ~~~~~v~~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 68 APKYGIRGIPTLLLF-KNGEVAATK 91 (109)
T ss_pred HHhCCCCcCCEEEEE-eCCeEEEEe
Confidence 888999999999999 799988764
No 124
>PHA02278 thioredoxin-like protein
Probab=99.37 E-value=1.6e-12 Score=104.87 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|+|||+||+||+.+.|.+.++++++... +.++.|++|.+.. +. ..+++.|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~-----------------d~---~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV-----------------DR---EKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc-----------------cc---HHHHHHCC
Confidence 5789999999999999999999999998875432 5678888776532 11 57899999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|.++||++++. +|+.+.+
T Consensus 70 I~~iPT~i~fk----~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGYK----DGQLVKK 87 (103)
T ss_pred CccccEEEEEE----CCEEEEE
Confidence 99999999999 7877754
No 125
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.36 E-value=3.1e-12 Score=121.26 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=70.0
Q ss_pred eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225 218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 297 (428)
Q Consensus 218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~ 297 (428)
...+++++|+++||+||++||++|+.+.|.|++++++| ++.|++|++|.... ..||.
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------------g~~Vi~VsvD~~~~-----------~~fp~ 214 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------------GIEVLPVSVDGGPL-----------PGFPN 214 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc------------CcEEEEEeCCCCcc-----------ccCCc
Confidence 46778889999999999999999999999999998887 37899999986532 12444
Q ss_pred CCcchhHHHHhcCcCccceEEEECCCCcEEe
Q 014225 298 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 298 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~ 328 (428)
.. .+..+++.|||.++|+++|+|++|+.+.
T Consensus 215 ~~-~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 215 AR-PDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred cc-CCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 42 2356889999999999999999654443
No 126
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.4e-12 Score=109.51 Aligned_cols=71 Identities=21% Similarity=0.478 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+++|+|+|||+||+||+...|.|+++..+|++. +.+.-|++|.. .+++..|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~------------------------~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH------------------------PELAEDYE 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc------------------------cchHhhcc
Confidence 3579999999999999999999999999999765 88888877655 67889999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|.++|+++++. ||+.+.+
T Consensus 113 I~avPtvlvfk----nGe~~d~ 130 (150)
T KOG0910|consen 113 ISAVPTVLVFK----NGEKVDR 130 (150)
T ss_pred eeeeeEEEEEE----CCEEeee
Confidence 99999999999 7877633
No 127
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.34 E-value=4.6e-12 Score=102.40 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.|++++|+|||+||++|+.++|.|.++++.+++.. +.++.++.| . ..+++.|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-T------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-C------------------------HHHHHHcC
Confidence 47899999999999999999999999999987543 677777665 2 45789999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.++|+++++. +|+.+.+
T Consensus 69 v~~~Pt~~~~~----~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFYK----NGELVAV 86 (102)
T ss_pred CCcCcEEEEEE----CCEEEEE
Confidence 99999988886 7876644
No 128
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.33 E-value=4.9e-12 Score=103.76 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=60.2
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~----------v~~~~Vd~d~~-----------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ----------VLFVAINCWWP-----------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------------------hH
Confidence 4689999999999999999999999999998653 78888888755 45
Q ss_pred HH-HhcCcCccceEEEECCCCcEEec
Q 014225 305 LT-KYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 305 ~~-~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
++ +.|+|.++||+.++ ++|+...+
T Consensus 75 l~~~~~~I~~~PTl~lf-~~g~~~~~ 99 (113)
T cd03006 75 KCRKQKHFFYFPVIHLY-YRSRGPIE 99 (113)
T ss_pred HHHHhcCCcccCEEEEE-ECCccceE
Confidence 67 58999999999999 78875433
No 129
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.33 E-value=8.6e-12 Score=107.57 Aligned_cols=89 Identities=18% Similarity=0.312 Sum_probs=70.4
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|+||++||++|+.+.|.++++.+++.+. ++.++.|++|.. .+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~-----------------------~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRF-----------------------PN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCC-----------------------HH
Confidence 4578999999999999999999999999998643 689999998866 56
Q ss_pred HHHhcCcCc------cceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225 305 LTKYFDVQG------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 346 (428)
Q Consensus 305 ~~~~~~v~~------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 346 (428)
+++.|+|.+ +||++++ ++|+.+.+..+-....-+..++.++
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~ 140 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFS 140 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEeccccCcccccccccc
Confidence 788888877 9999999 7999998876644333333333344
No 130
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.32 E-value=1.1e-11 Score=104.78 Aligned_cols=98 Identities=11% Similarity=0.147 Sum_probs=72.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++|||.|||+||++|+.+.|.|.++++++++. +.|+-|++|.. .+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe~-----------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITEV-----------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCCC-----------------------HH
Confidence 4689999999999999999999999999998754 67889999865 78
Q ss_pred HHHhcCcCccceEE-EECCCCc-EEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225 305 LTKYFDVQGIPCLV-IIGPEGK-TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 305 ~~~~~~v~~~P~~~-lid~~G~-i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
++..|+|.+.|+++ ++ ++|+ .+.+..++..-.. +.....++|.+.++..++
T Consensus 69 la~~y~I~~~~t~~~ff-k~g~~~vd~~tG~~~k~~------~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 69 FNTMYELYDPCTVMFFF-RNKHIMIDLGTGNNNKIN------WALKDKQEFIDIVETVYR 121 (142)
T ss_pred HHHHcCccCCCcEEEEE-ECCeEEEEEecccccccc------cccCCHHHHHHHHHHHHH
Confidence 99999999887776 66 8887 7776544321111 112234556666655554
No 131
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.32 E-value=1.1e-11 Score=110.15 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=95.5
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 278 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~- 278 (428)
.....++|++ |.+|+ .+++++++||+++|+|..+.|| .|...+..|.++.+++... +.++++|+||+|+
T Consensus 28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE 99 (174)
T ss_dssp TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence 4556789999 99999 9999999999999999999998 7999999999999999875 5689999999996
Q ss_pred --CHHHHHHHHhcCC--ccccccCCcchhHHHHhcCcCc----------------cceEEEECCCCcEEecc
Q 014225 279 --DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQG----------------IPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 279 --~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~~----------------~P~~~lid~~G~i~~~~ 330 (428)
+++.+++|.+..+ |..+....+...++.+.|++.. ...++|||++|+++..+
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 3677888888654 4444444445677888887631 23689999999999875
No 132
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.32 E-value=6.5e-12 Score=101.79 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=62.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
.||+++|+||++||++|+.+.+.+ .++.+.+++ ++.++.|+++.+.. .
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~-------------------~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP-------------------E 60 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------H
Confidence 578999999999999999999887 567777653 47888888764321 1
Q ss_pred hhHHHHhcCcCccceEEEECC-CCcEEeccc
Q 014225 302 IKELTKYFDVQGIPCLVIIGP-EGKTVTKQG 331 (428)
Q Consensus 302 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~ 331 (428)
...+++.|++.++|+++++++ +|+++.+..
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~ 91 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGPGGEPEPLRLP 91 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCCCcccc
Confidence 267889999999999999998 898877643
No 133
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.32 E-value=6.2e-12 Score=103.25 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=61.7
Q ss_pred cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225 58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 137 (428)
Q Consensus 58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 137 (428)
..+|++++|+|||+||++|+.+.|.+.++++++++.+ +.++.|++|.. ..+++.
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~------------------------~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE------------------------RRLARK 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc------------------------HHHHHH
Confidence 3468999999999999999999999999999998654 77777765533 578899
Q ss_pred cCCCCCceEEEEcCCCCCCCcccc
Q 014225 138 FDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 138 ~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|+|.++|+++++. +|+++..
T Consensus 75 ~~V~~~Pt~~i~~----~g~~~~~ 94 (111)
T cd02963 75 LGAHSVPAIVGII----NGQVTFY 94 (111)
T ss_pred cCCccCCEEEEEE----CCEEEEE
Confidence 9999999999996 7866543
No 134
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.31 E-value=9e-12 Score=99.31 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+|++++|+||++||++|+.+.|.++++++.+.+. +.++.|+.|.. ..+++.|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ------------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC------------------------HHHHHHcC
Confidence 4789999999999999999999999999998653 66777665543 67889999
Q ss_pred CCCCceEEEEcCCCCCCCccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~ 160 (428)
+.++|++++++ +|+.+.
T Consensus 64 i~~~Pt~~~~~----~g~~~~ 80 (96)
T cd02956 64 VQALPTVYLFA----AGQPVD 80 (96)
T ss_pred CCCCCEEEEEe----CCEEee
Confidence 99999999997 686653
No 135
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.31 E-value=5.6e-12 Score=101.60 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 138 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 138 (428)
.++++++|.||++||++|+.+.|.+.++++++++. +.+..|+.|.. ..+++.|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~------------------------~~~~~~~ 68 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD------------------------RMLCRSQ 68 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc------------------------HHHHHHc
Confidence 45689999999999999999999999999999753 77777776543 6788999
Q ss_pred CCCCCceEEEEcCCCCCCCcc
Q 014225 139 DIEGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 139 ~v~~~P~~~lid~~~~dG~i~ 159 (428)
++.++|+++++. +|+.+
T Consensus 69 ~v~~~Pt~~~~~----~g~~~ 85 (101)
T cd03003 69 GVNSYPSLYVFP----SGMNP 85 (101)
T ss_pred CCCccCEEEEEc----CCCCc
Confidence 999999999996 67543
No 136
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.31 E-value=2.2e-11 Score=98.69 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=57.9
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
++++++|.||++||++|+.+.|.|.++++++++. +.++.+..++++.. ..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAY-----------------------SS 63 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECccC-----------------------Hh
Confidence 3578999999999999999999999999999754 23466777766543 56
Q ss_pred HHHhcCcCccceEEEECCCCcE
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i 326 (428)
+++.|+|.++|+++++ .+|.+
T Consensus 64 ~~~~~~I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 64 IASEFGVRGYPTIKLL-KGDLA 84 (104)
T ss_pred HHhhcCCccccEEEEE-cCCCc
Confidence 8889999999999999 45543
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.31 E-value=1.7e-11 Score=98.73 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=57.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+|+ ++|.|||+||++|+.+.|.|.++++.++.. ++.+..|+++.+ ..
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~~ 62 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL---------GINVAKVDVTQE-----------------------PG 62 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC---------CeEEEEEEccCC-----------------------Hh
Confidence 455 689999999999999999999999876543 578888877754 56
Q ss_pred HHHhcCcCccceEEEECCCCcE
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i 326 (428)
+++.|+|.++||++++ ++|++
T Consensus 63 ~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 63 LSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred HHHHcCCcccCEEEEe-CCCCE
Confidence 8899999999999998 88986
No 138
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.30 E-value=1.1e-11 Score=100.41 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=61.0
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.|.+.++.+++.+ .+.++.|+++.. .++
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 65 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQKY-----------------------ESL 65 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCch-----------------------HHH
Confidence 57999999999999999999999999999854 377888887754 678
Q ss_pred HHhcCcCccceEEEECCCCcEEecc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
++.|+|.++||++++..+|+.+.+.
T Consensus 66 ~~~~~i~~~Pt~~~~~~g~~~~~~~ 90 (104)
T cd03004 66 CQQANIRAYPTIRLYPGNASKYHSY 90 (104)
T ss_pred HHHcCCCcccEEEEEcCCCCCceEc
Confidence 9999999999999996654666554
No 139
>PRK10996 thioredoxin 2; Provisional
Probab=99.30 E-value=2.6e-11 Score=103.60 Aligned_cols=72 Identities=28% Similarity=0.535 Sum_probs=62.0
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.|+++.. ..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEAE-----------------------RE 97 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCCC-----------------------HH
Confidence 478999999999999999999999999988754 477888877644 67
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 98 l~~~~~V~~~Ptlii~-~~G~~v~~~ 122 (139)
T PRK10996 98 LSARFRIRSIPTIMIF-KNGQVVDML 122 (139)
T ss_pred HHHhcCCCccCEEEEE-ECCEEEEEE
Confidence 8999999999999998 689988774
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.29 E-value=4.7e-12 Score=103.96 Aligned_cols=96 Identities=27% Similarity=0.481 Sum_probs=65.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.||+++++||++|||+|+.+.+.+.+..+ +...+ ..++.++.++++.+......++...+. +.......+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VARYL------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHCEE------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHHHh------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence 47999999999999999999998886443 21110 124788999988665555555443221 111223468
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+.+.|||.++||++++|++|+++.+.
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~v~~~ 99 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKIVYRI 99 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCEEEEE
T ss_pred HHHHcCCCccCEEEEEcCCCCEEEEe
Confidence 99999999999999999999988763
No 141
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.27 E-value=2e-11 Score=98.62 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+|+|||.|+|+||++|+.+.|.|.+++++|+.. +.++.|++|.. .+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDev-----------------------~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDKV-----------------------PV 59 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEecccc-----------------------HH
Confidence 5799999999999999999999999999998632 67888888855 78
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++.|+|.+.||++++ ++|+-+..+
T Consensus 60 va~~y~I~amPtfvff-kngkh~~~d 84 (114)
T cd02986 60 YTQYFDISYIPSTIFF-FNGQHMKVD 84 (114)
T ss_pred HHHhcCceeCcEEEEE-ECCcEEEEe
Confidence 9999999999999999 888665543
No 142
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.27 E-value=1.6e-11 Score=106.89 Aligned_cols=116 Identities=15% Similarity=0.249 Sum_probs=90.8
Q ss_pred ccccccCc-cccCC---CCEEeccc-CCCCE-EEEEEecCCChhhhhh-HHHHHHHHHHHhcCCCcE-EEEEEecCCChH
Q 014225 38 LASKDRDY-LLNQH---GTQVKVSD-LEGKV-TALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDF-EVVFVSSDEDLN 109 (428)
Q Consensus 38 ~g~~~pdf-l~~~~---G~~v~l~~-~~gk~-vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~ii~vs~D~~~~ 109 (428)
+|+.+||| |.+.+ |+.++|++ ++||. |+++|.+.||+.|..+ ++.+++.+++|++.| + +|++||.|....
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~ 78 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFV 78 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHH
Confidence 48899999 98875 99999999 58875 5555559999999999 999999999999887 8 599999987664
Q ss_pred HHHHHHhcCCC-ceec-cCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225 110 AFNNYRACMPW-LAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 110 ~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~ 162 (428)
.++|.++++. ..++ .+|.+ ..+++.||+. ....++||| +|+|++..
T Consensus 79 -~~~~~~~~~~~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId----~g~I~~~~ 137 (155)
T cd03013 79 -MKAWGKALGAKDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD----DGKVKYLF 137 (155)
T ss_pred -HHHHHHhhCCCCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC----CCEEEEEE
Confidence 7778777765 2233 34554 8999999973 135678888 68887653
No 143
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.27 E-value=2.8e-11 Score=98.82 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=59.9
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+++.|.+.++++.++... ++ ...+.++.|++|.+ .++
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~---~~-~~~~~~~~vd~d~~-----------------------~~l 70 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF---PD-AGKVVWGKVDCDKE-----------------------SDI 70 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc---CC-CCcEEEEEEECCCC-----------------------HHH
Confidence 5789999999999999999999999999886430 00 01377777777755 678
Q ss_pred HHhcCcCccceEEEECCCCcEE
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~ 327 (428)
+++|+|+++||++++ ++|++.
T Consensus 71 ~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 71 ADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred HHhCCCCcCCEEEEE-eCCcCc
Confidence 999999999999999 888843
No 144
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.27 E-value=1.2e-11 Score=102.35 Aligned_cols=76 Identities=22% Similarity=0.479 Sum_probs=57.8
Q ss_pred cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
+...+|+|+|+|||+||++|+.+.|.+.+....... +..++.|.+|.+.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~--------------------- 63 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE--------------------- 63 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC---------------------
Confidence 344689999999999999999999999887665432 2356666776442
Q ss_pred hhHHHHhcCcCc--cceEEEECCCCcEEec
Q 014225 302 IKELTKYFDVQG--IPCLVIIGPEGKTVTK 329 (428)
Q Consensus 302 ~~~~~~~~~v~~--~P~~~lid~~G~i~~~ 329 (428)
......|++.+ +|+++++|++|+++.+
T Consensus 64 -~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 64 -EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred -CchhhhcccCCCccceEEEECCCCCCchh
Confidence 22345677765 9999999999999875
No 145
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.26 E-value=3.4e-11 Score=99.11 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=62.1
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++|+|+||++||++|+.+.|.|.++.+++. ++.++-|+++.. ..+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~~-----------------------~~l 67 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEKA-----------------------PFL 67 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEcccC-----------------------HHH
Confidence 4789999999999999999999999998874 468888887755 678
Q ss_pred HHhcCcCccceEEEECCCCcEEeccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
++.|+|.++||++++ ++|+.+.+..
T Consensus 68 ~~~~~v~~vPt~l~f-k~G~~v~~~~ 92 (113)
T cd02989 68 VEKLNIKVLPTVILF-KNGKTVDRIV 92 (113)
T ss_pred HHHCCCccCCEEEEE-ECCEEEEEEE
Confidence 999999999999999 8999887743
No 146
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.25 E-value=2.7e-11 Score=99.09 Aligned_cols=73 Identities=15% Similarity=0.372 Sum_probs=60.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+|++++|.||++||++|+++.|.|.++++.+++. ++.++.|.+|.+. ..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence 4789999999999999999999999999998754 6889998888631 44
Q ss_pred HHH-hcCcCccceEEEECCCCcEEe
Q 014225 305 LTK-YFDVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 305 ~~~-~~~v~~~P~~~lid~~G~i~~ 328 (428)
++. .|+++++||+++++++|+...
T Consensus 69 ~~~~~~~v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 69 FAKEELQLKSFPTILFFPKNSRQPI 93 (109)
T ss_pred hHHhhcCCCcCCEEEEEcCCCCCce
Confidence 554 599999999999987765443
No 147
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.25 E-value=4e-11 Score=97.85 Aligned_cols=69 Identities=28% Similarity=0.476 Sum_probs=59.5
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.|++++|.||++||++|+++.|.+.++++.+.+. +.++.|++|.+. ...
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~----------~~~~~v~~~~~~---------------------~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL----------VQVAAVDCDEDK---------------------NKP 65 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC----------ceEEEEecCccc---------------------cHH
Confidence 3688999999999999999999999999988643 788888888532 267
Q ss_pred HHHhcCcCccceEEEECCCC
Q 014225 305 LTKYFDVQGIPCLVIIGPEG 324 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G 324 (428)
+++.|+|.++|+++++++++
T Consensus 66 ~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 66 LCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred HHHHcCCCcCCEEEEEeCCC
Confidence 89999999999999997776
No 148
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.25 E-value=3.9e-11 Score=95.69 Aligned_cols=72 Identities=18% Similarity=0.398 Sum_probs=60.1
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.|.|.++.+++.. ++.++.|+.+.. .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~~~-----------------------~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAEEL-----------------------PEI 60 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccccC-----------------------HHH
Confidence 68999999999999999999999999988732 466766655432 678
Q ss_pred HHhcCcCccceEEEECCCCcEEeccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
++.|++.++||++++ ++|+++.+..
T Consensus 61 ~~~~~i~~~Pt~~~~-~~g~~~~~~~ 85 (97)
T cd02984 61 SEKFEITAVPTFVFF-RNGTIVDRVS 85 (97)
T ss_pred HHhcCCccccEEEEE-ECCEEEEEEe
Confidence 999999999999999 6899887743
No 149
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-11 Score=99.77 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+|+++|+|+|+||+||+.+.|.+.+++.+|.+ +.++.|++|. - ..+++.+++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde--~----------------------~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE--L----------------------EEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc--C----------------------HhHHHhcCc
Confidence 69999999999999999999999999999865 6677777665 2 789999999
Q ss_pred CCCceEEEEcCCCCCCCcccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~ 161 (428)
..+||++++. +|+.+..
T Consensus 73 ~~~PTf~f~k----~g~~~~~ 89 (106)
T KOG0907|consen 73 KAMPTFVFYK----GGEEVDE 89 (106)
T ss_pred eEeeEEEEEE----CCEEEEE
Confidence 9999999997 6765543
No 150
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.24 E-value=6.7e-11 Score=95.11 Aligned_cols=72 Identities=33% Similarity=0.678 Sum_probs=62.4
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|+++.. ..
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 62 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDEN-----------------------KE 62 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTS-----------------------HH
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhcc-----------------------ch
Confidence 368999999999999999999999999999864 478888887754 68
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++.|+|.++|+++++ .+|+...+.
T Consensus 63 l~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (103)
T PF00085_consen 63 LCKKYGVKSVPTIIFF-KNGKEVKRY 87 (103)
T ss_dssp HHHHTTCSSSSEEEEE-ETTEEEEEE
T ss_pred hhhccCCCCCCEEEEE-ECCcEEEEE
Confidence 9999999999999999 778777653
No 151
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.24 E-value=3.3e-11 Score=98.81 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH-hhc
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN-RKF 138 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~~ 138 (428)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|+.|.. ..++ +.|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------hHHHHHhc
Confidence 4689999999999999999999999999999764 77777766544 5566 589
Q ss_pred CCCCCceEEEEcCCCCCCCc
Q 014225 139 DIEGIPCLVVLQPYDDKDDA 158 (428)
Q Consensus 139 ~v~~~P~~~lid~~~~dG~i 158 (428)
+|.++||+.++. +|+.
T Consensus 81 ~I~~~PTl~lf~----~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLYY----RSRG 96 (113)
T ss_pred CCcccCEEEEEE----CCcc
Confidence 999999999996 6754
No 152
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.24 E-value=7.4e-11 Score=104.78 Aligned_cols=120 Identities=21% Similarity=0.382 Sum_probs=95.8
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFN 112 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~~~~~ 112 (428)
.....++| |+|.+|+++++++++||+++|+|..+.|| .|...+..|+++.+++.+.+.++++++|++|. +.+.++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 45667889 99999999999999999999999999998 99999999999999999877789999999984 357788
Q ss_pred HHHhcCC--CceeccCChHHHHHHHhhcCCC----------------CCceEEEEcCCCCCCCcccc
Q 014225 113 NYRACMP--WLAVPYSDLETKKALNRKFDIE----------------GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 113 ~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~----------------~~P~~~lid~~~~dG~i~~~ 161 (428)
+|.+.++ |..+.+ ......++++.|++. ....++|||+ +|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp---~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTG-SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP---DGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEE-EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T---TSEEEEE
T ss_pred HHHHhcCCCcceeEe-CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC---CCcEEEE
Confidence 8888653 555544 444447888888753 3457899999 9988754
No 153
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.24 E-value=3.3e-11 Score=97.43 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+|+|+|.|+|+||+||+.+.|.|.++++++++. +.++.|++|+. ..+++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc------------------------HHHHHhcC
Confidence 5899999999999999999999999999999653 66666666544 78999999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.+.|+++++. +|+-..-
T Consensus 66 I~amPtfvffk----ngkh~~~ 83 (114)
T cd02986 66 ISYIPSTIFFF----NGQHMKV 83 (114)
T ss_pred ceeCcEEEEEE----CCcEEEE
Confidence 99999999888 5755433
No 154
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.24 E-value=6.9e-11 Score=94.52 Aligned_cols=72 Identities=17% Similarity=0.382 Sum_probs=61.9
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++|+++||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.. .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~~-----------------------~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDED-----------------------QE 58 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 468999999999999999999999999988764 377888887754 57
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+.+.|+|.++|+++++ ++|+++.+.
T Consensus 59 l~~~~~v~~vPt~~i~-~~g~~v~~~ 83 (97)
T cd02949 59 IAEAAGIMGTPTVQFF-KDKELVKEI 83 (97)
T ss_pred HHHHCCCeeccEEEEE-ECCeEEEEE
Confidence 8899999999999999 689988764
No 155
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.23 E-value=7.2e-11 Score=95.00 Aligned_cols=72 Identities=25% Similarity=0.508 Sum_probs=59.9
Q ss_pred EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH
Q 014225 228 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 307 (428)
Q Consensus 228 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 307 (428)
+++|+||++||++|+.+.|.+.++++++++. ...+.++.|+++.+ ..+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH-----------------------RELCS 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC-----------------------hhhHh
Confidence 4999999999999999999999999999762 12578887777644 57888
Q ss_pred hcCcCccceEEEECCCCcEEecc
Q 014225 308 YFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 308 ~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
.|+|.++|+++++ ++|+.+.+.
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~~ 89 (102)
T cd03005 68 EFQVRGYPTLLLF-KDGEKVDKY 89 (102)
T ss_pred hcCCCcCCEEEEE-eCCCeeeEe
Confidence 9999999999999 788766543
No 156
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.23 E-value=1.7e-11 Score=116.13 Aligned_cols=90 Identities=19% Similarity=0.303 Sum_probs=71.5
Q ss_pred CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225 50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 129 (428)
Q Consensus 50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 129 (428)
..+...+++++|+++||+||++||++|+.++|.|+++++++ | +.|++|++|.+... .+|..+.+
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g--~~Vi~VsvD~~~~~-----------~fp~~~~d 218 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---G--IEVLPVSVDGGPLP-----------GFPNARPD 218 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---C--cEEEEEeCCCCccc-----------cCCcccCC
Confidence 33457788999999999999999999999999999999997 3 78999999876431 12222222
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225 130 TKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 130 ~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~ 160 (428)
..+++.|||.++|+++|+++ +|..+.
T Consensus 219 --~~la~~~gV~~vPtl~Lv~~---~~~~v~ 244 (271)
T TIGR02740 219 --AGQAQQLKIRTVPAVFLADP---DPNQFT 244 (271)
T ss_pred --HHHHHHcCCCcCCeEEEEEC---CCCEEE
Confidence 56789999999999999998 765443
No 157
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.23 E-value=3.6e-11 Score=100.82 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=63.7
Q ss_pred CC-CEEEEEEecCCChhhhhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 60 EG-KVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 60 ~g-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+| |+|+|+||++||++|+.+.|.+. .+.+.+++. +.++.|++|.+.... .| .. .......++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~~---------~~-~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-DF---------DG-EALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-cc---------CC-CCccHHHHH
Confidence 57 89999999999999999999885 566666543 888889887664311 11 10 011227899
Q ss_pred hhcCCCCCceEEEEcCCCCC-CCcccc
Q 014225 136 RKFDIEGIPCLVVLQPYDDK-DDATLH 161 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~d-G~i~~~ 161 (428)
..|++.++|+++++++ + |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~---~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDP---EGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcC---CCCceeEE
Confidence 9999999999999998 8 777654
No 158
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.23 E-value=5.7e-11 Score=98.21 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=59.9
Q ss_pred cEEEEEEeccCChh--HH--hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 227 KTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 227 k~vll~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
.++|++||++||++ |+ .+.|.+.+++.++-.. .++.|+.|++|.+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~~----------------------- 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKKD----------------------- 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCCC-----------------------
Confidence 58999999999987 99 7888899988887221 2588999998866
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEec
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
.++++.|+|+++||++++ ++|+++..
T Consensus 77 ~~La~~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence 789999999999999999 89998763
No 159
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.22 E-value=4e-11 Score=97.01 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCcEEEEEEeccC--ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 225 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 225 ~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
.|.+++|.||++| ||+|..+.|.|.++.++|.+. +.++.|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~----------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE----------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence 4577999999997 999999999999999998754 77888888866
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
.+++..|+|+++||++++ ++|+++.+..|
T Consensus 73 ~~la~~f~V~sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 73 QALAARFGVLRTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred HHHHHHcCCCcCCEEEEE-ECCEEEEEEeC
Confidence 689999999999999999 89999987543
No 160
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.21 E-value=5.3e-11 Score=98.02 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=59.6
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.|.|+++++++. ++.++.|+++. . .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~~~-----------------------~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINAEK-----------------------A-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEchh-----------------------h-HH
Confidence 4789999999999999999999999998874 35666666551 2 68
Q ss_pred HHhcCcCccceEEEECCCCcEEecccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
++.|+|.++||++++ ++|+.+.+..+
T Consensus 69 ~~~~~i~~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 69 VNYLDIKVLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred HHhcCCCcCCEEEEE-ECCEEEEEEec
Confidence 899999999999999 89999887543
No 161
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.21 E-value=6.2e-11 Score=95.96 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=55.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+++++|.|||+||++|+.+.|.+.++++++++. +.+..|+.|.. ..+++.|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY------------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch------------------------HHHHHHcC
Confidence 3679999999999999999999999999998543 77777655432 67889999
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
+.++|+++++..
T Consensus 71 i~~~Pt~~~~~~ 82 (104)
T cd03004 71 IRAYPTIRLYPG 82 (104)
T ss_pred CCcccEEEEEcC
Confidence 999999999986
No 162
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.21 E-value=6.9e-11 Score=94.93 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=59.8
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
++++++|.||++||++|+.+.+.|.++++.++.. .++.++.+.++.. ..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-----------------------~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATAE-----------------------KD 60 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccch-----------------------HH
Confidence 6889999999999999999999999999888753 1477777766543 67
Q ss_pred HHHhcCcCccceEEEECCCCcE
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i 326 (428)
+++.|++.++|+++++++++.+
T Consensus 61 ~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 61 LASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred HHHhCCCCcCCEEEEecCCCcc
Confidence 8899999999999999877763
No 163
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.21 E-value=7.8e-11 Score=108.06 Aligned_cols=71 Identities=25% Similarity=0.476 Sum_probs=59.8
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++.+ ..+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~----------v~~~~VD~~~~-----------------------~~l 98 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ----------VNVADLDATRA-----------------------LNL 98 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEecCccc-----------------------HHH
Confidence 578999999999999999999999999988643 66766665543 678
Q ss_pred HHhcCcCccceEEEECCCCcEEecc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
++.|+|.++||+++++ +|+++...
T Consensus 99 ~~~~~I~~~PTl~~f~-~G~~v~~~ 122 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFD-KGKMYQYE 122 (224)
T ss_pred HHHcCCCcCCEEEEEE-CCEEEEee
Confidence 9999999999999995 88877654
No 164
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.21 E-value=7.6e-11 Score=101.68 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=61.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|+||++||++|+.+.|.++++++++.+.+ +.++.|++|.. ..+++.|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~------------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRF------------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCC------------------------HHHHHHcC
Confidence 46799999999999999999999999999987654 88888877665 45667777
Q ss_pred CCC------CceEEEEcCCCCCCCcccccc
Q 014225 140 IEG------IPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 140 v~~------~P~~~lid~~~~dG~i~~~~~ 163 (428)
|.+ +||++++. +|+.+.+..
T Consensus 100 V~~~~~v~~~PT~ilf~----~Gk~v~r~~ 125 (152)
T cd02962 100 VSTSPLSKQLPTIILFQ----GGKEVARRP 125 (152)
T ss_pred ceecCCcCCCCEEEEEE----CCEEEEEEe
Confidence 766 99999998 788776543
No 165
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.20 E-value=8.1e-11 Score=95.37 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=55.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|.||++||++|+.+.|.|.++++.+++.+.++.+..++.+.. ..+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY------------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC------------------------HhHHhhcC
Confidence 467999999999999999999999999999976553455555544322 56788999
Q ss_pred CCCCceEEEEc
Q 014225 140 IEGIPCLVVLQ 150 (428)
Q Consensus 140 v~~~P~~~lid 150 (428)
+.++|+++++.
T Consensus 70 I~~~Pt~~l~~ 80 (104)
T cd03000 70 VRGYPTIKLLK 80 (104)
T ss_pred CccccEEEEEc
Confidence 99999999996
No 166
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.19 E-value=6.1e-11 Score=96.77 Aligned_cols=67 Identities=33% Similarity=0.521 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.|++++|.||++||++|+.+.|.+.++++++.+. +.++.|+.|.+.. ..+++.|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~----------------------~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN----------------------KPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc----------------------HHHHHHcC
Confidence 4789999999999999999999999999998753 7788887765422 67889999
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
+.++|+++++++
T Consensus 72 i~~~Pt~~~~~~ 83 (109)
T cd03002 72 VQGFPTLKVFRP 83 (109)
T ss_pred CCcCCEEEEEeC
Confidence 999999999997
No 167
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.19 E-value=1.5e-10 Score=92.71 Aligned_cols=71 Identities=25% Similarity=0.559 Sum_probs=61.1
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|+||++||++|+.+.+.|+++.+++.+ ++.++.|.++.+ ..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence 46899999999999999999999999988764 378888887754 568
Q ss_pred HHhcCcCccceEEEECCCCcEEecc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
.+.|++.++|+++++ ++|+++...
T Consensus 61 ~~~~~v~~~P~~~~~-~~g~~~~~~ 84 (101)
T TIGR01068 61 AAKYGIRSIPTLLLF-KNGKEVDRS 84 (101)
T ss_pred HHHcCCCcCCEEEEE-eCCcEeeee
Confidence 899999999999999 788877653
No 168
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.19 E-value=1.7e-10 Score=95.08 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=59.3
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.|.++++++++++. .+.+.+..|+++.+. ...+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL 70 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence 379999999999999999999999999998754 224677777665332 3678
Q ss_pred HHhcCcCccceEEEECCCCcEEec
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
++.|++.++|+++++ ++|.....
T Consensus 71 ~~~~~i~~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 71 CRDFGVTGYPTLRYF-PPFSKEAT 93 (114)
T ss_pred HHhCCCCCCCEEEEE-CCCCccCC
Confidence 999999999999999 55554443
No 169
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.18 E-value=5.4e-11 Score=95.75 Aligned_cols=69 Identities=16% Similarity=0.405 Sum_probs=56.0
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225 63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 142 (428)
Q Consensus 63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 142 (428)
.++|+||++||++|+.++|.++++++++++...++.++.|+.+.. ..+++.|++.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH------------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC------------------------hhhHhhcCCCc
Confidence 499999999999999999999999999987322377776654432 57788899999
Q ss_pred CceEEEEcCCCCCCCcc
Q 014225 143 IPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 143 ~P~~~lid~~~~dG~i~ 159 (428)
+|+++++. +|+.+
T Consensus 74 ~Pt~~~~~----~g~~~ 86 (102)
T cd03005 74 YPTLLLFK----DGEKV 86 (102)
T ss_pred CCEEEEEe----CCCee
Confidence 99999995 67644
No 170
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.18 E-value=6.8e-11 Score=95.19 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=55.6
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 138 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 138 (428)
.+|+ ++|+|||+||++|+.+.|.+.++++.++..+ +.+..|+.|.. ..+++.|
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~ 67 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQE------------------------PGLSGRF 67 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCC------------------------HhHHHHc
Confidence 3555 6899999999999999999999999876543 77776655433 5678899
Q ss_pred CCCCCceEEEEcCCCCCCCc
Q 014225 139 DIEGIPCLVVLQPYDDKDDA 158 (428)
Q Consensus 139 ~v~~~P~~~lid~~~~dG~i 158 (428)
++.++|+++++. +|++
T Consensus 68 ~i~~~Pt~~~~~----~g~~ 83 (101)
T cd02994 68 FVTALPTIYHAK----DGVF 83 (101)
T ss_pred CCcccCEEEEeC----CCCE
Confidence 999999999884 7864
No 171
>PTZ00051 thioredoxin; Provisional
Probab=99.18 E-value=1e-10 Score=93.50 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=60.7
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+.. ..
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDEL-----------------------SE 62 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcch-----------------------HH
Confidence 36789999999999999999999999888653 467777776633 67
Q ss_pred HHHhcCcCccceEEEECCCCcEEecccc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
+++.|++.++|+++++ ++|+++.+..+
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~~G 89 (98)
T PTZ00051 63 VAEKENITSMPTFKVF-KNGSVVDTLLG 89 (98)
T ss_pred HHHHCCCceeeEEEEE-eCCeEEEEEeC
Confidence 8999999999998888 89999877543
No 172
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.17 E-value=9.2e-11 Score=99.30 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=58.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+++|+|+|||+||+||+.+.|.|.++++++++. +.++-|++|.. +.+++.|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998765 67777777655 78899999
Q ss_pred CCCCceEEEEcCCCCCCC
Q 014225 140 IEGIPCLVVLQPYDDKDD 157 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~ 157 (428)
|.+.|+++++-+ +|.
T Consensus 75 I~~~~t~~~ffk---~g~ 89 (142)
T PLN00410 75 LYDPCTVMFFFR---NKH 89 (142)
T ss_pred ccCCCcEEEEEE---CCe
Confidence 998888885555 786
No 173
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.17 E-value=5.7e-11 Score=96.93 Aligned_cols=72 Identities=11% Similarity=0.243 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCC---CcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 136 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 136 (428)
.+++++|+|||+||++|+.+.|.+.++++++++.. .++.+..|+.|.. ..+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~------------------------~~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE------------------------SDIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC------------------------HHHHH
Confidence 46899999999999999999999999999886531 1255555544433 67899
Q ss_pred hcCCCCCceEEEEcCCCCCCCcc
Q 014225 137 KFDIEGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 137 ~~~v~~~P~~~lid~~~~dG~i~ 159 (428)
.|++.++|+++++. +|++.
T Consensus 73 ~~~v~~~Ptl~~~~----~g~~~ 91 (108)
T cd02996 73 RYRINKYPTLKLFR----NGMMM 91 (108)
T ss_pred hCCCCcCCEEEEEe----CCcCc
Confidence 99999999999996 67643
No 174
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.17 E-value=1.3e-10 Score=95.07 Aligned_cols=67 Identities=15% Similarity=0.410 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh-hc
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 138 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 138 (428)
+||+++|.||++||++|+.+.|.+.++++++++.+ +.++.|+.|.+. ..+++ .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~-----------------------~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ-----------------------REFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc-----------------------hhhHHhhc
Confidence 47899999999999999999999999999998654 888888776521 33444 58
Q ss_pred CCCCCceEEEEcC
Q 014225 139 DIEGIPCLVVLQP 151 (428)
Q Consensus 139 ~v~~~P~~~lid~ 151 (428)
++.++|+++++++
T Consensus 75 ~v~~~Pti~~f~~ 87 (109)
T cd02993 75 QLKSFPTILFFPK 87 (109)
T ss_pred CCCcCCEEEEEcC
Confidence 9999999999986
No 175
>PTZ00062 glutaredoxin; Provisional
Probab=99.16 E-value=2.1e-10 Score=103.54 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=50.2
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225 62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 141 (428)
Q Consensus 62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 141 (428)
..++++|||+||++|+.+.|.|.++.++|.+ +.++-|+.| |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d--------------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA--------------------------------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc--------------------------------cCcc
Confidence 4689999999999999999999999999843 666665321 8899
Q ss_pred CCceEEEEcCCCCCCCcccc
Q 014225 142 GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 142 ~~P~~~lid~~~~dG~i~~~ 161 (428)
++|+++++. +|+.+.+
T Consensus 62 ~vPtfv~~~----~g~~i~r 77 (204)
T PTZ00062 62 EYGVFEFYQ----NSQLINS 77 (204)
T ss_pred cceEEEEEE----CCEEEee
Confidence 999999998 7887765
No 176
>PRK09381 trxA thioredoxin; Provisional
Probab=99.16 E-value=1.2e-10 Score=95.14 Aligned_cols=83 Identities=19% Similarity=0.416 Sum_probs=64.3
Q ss_pred cCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccC
Q 014225 48 NQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 126 (428)
Q Consensus 48 ~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~ 126 (428)
..+++++.-.-. .+++++|+||++||++|+.+.|.++++++++.+. +.++.|+.|..
T Consensus 7 ~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~------------------- 64 (109)
T PRK09381 7 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------- 64 (109)
T ss_pred eeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC-------------------
Confidence 344444432222 3789999999999999999999999999999763 77888776544
Q ss_pred ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 127 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 127 d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
..+.+.|++.++|+++++. +|+++..
T Consensus 65 -----~~~~~~~~v~~~Pt~~~~~----~G~~~~~ 90 (109)
T PRK09381 65 -----PGTAPKYGIRGIPTLLLFK----NGEVAAT 90 (109)
T ss_pred -----hhHHHhCCCCcCCEEEEEe----CCeEEEE
Confidence 4567889999999999996 7877644
No 177
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.16 E-value=1.9e-10 Score=92.87 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=60.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
++++++|.||++||++|+++.|.+.++.+.+... ..+.++.|+++.+. ...
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence 3568999999999999999999999999988743 24666667666421 267
Q ss_pred HHHhcCcCccceEEEECCCCcEEecc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~~ 91 (104)
T cd02997 67 LKEEYNVKGFPTFKYF-ENGKFVEKY 91 (104)
T ss_pred HHHhCCCccccEEEEE-eCCCeeEEe
Confidence 8899999999999888 788876654
No 178
>PTZ00062 glutaredoxin; Provisional
Probab=99.15 E-value=9.2e-11 Score=105.82 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=76.0
Q ss_pred cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225 227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 306 (428)
Q Consensus 227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 306 (428)
..++++|||+|||+|+.+.|.|.++.++|. ++.++.|+.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~~~F~~V~~d----------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------SLEFYVVNLA----------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------CcEEEEEccc-----------------------------
Confidence 447999999999999999999999999875 3556655422
Q ss_pred HhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCCCc-----cccccccceeeee
Q 014225 307 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSE-----FHIGHRHELNLVS 381 (428)
Q Consensus 307 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~ 381 (428)
|+|.++|+++++ ++|+.+.+.. |+++ .+|...+.+.....+.+. ...-..|.+.+
T Consensus 58 --~~V~~vPtfv~~-~~g~~i~r~~-------G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvv-- 117 (204)
T PTZ00062 58 --DANNEYGVFEFY-QNSQLINSLE-------GCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILL-- 117 (204)
T ss_pred --cCcccceEEEEE-ECCEEEeeee-------CCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEE--
Confidence 799999999999 8999998843 3332 566666666554333221 11112467777
Q ss_pred ccCCCCC---cccccccCC
Q 014225 382 EGTGGGP---FICCDCDEQ 397 (428)
Q Consensus 382 ~~~~~~~---~~c~~C~~~ 397 (428)
.+.|. +.|+.|++.
T Consensus 118 --f~Kg~~~~p~C~~C~~~ 134 (204)
T PTZ00062 118 --FMKGSKTFPFCRFSNAV 134 (204)
T ss_pred --EEccCCCCCCChhHHHH
Confidence 55553 578888753
No 179
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.8e-11 Score=109.41 Aligned_cols=71 Identities=20% Similarity=0.406 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+-++|+|+||++||++|+..+|.|.++..+|+++ +.+.-|++|.. ..++..||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~------------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE------------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc------------------------hhHHHHhC
Confidence 4579999999999999999999999999999887 88888877665 78999999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|.++|+.|++. +|+.+..
T Consensus 95 iqsIPtV~af~----dGqpVdg 112 (304)
T COG3118 95 VQSIPTVYAFK----DGQPVDG 112 (304)
T ss_pred cCcCCeEEEee----CCcCccc
Confidence 99999999999 7977754
No 180
>PRK10996 thioredoxin 2; Provisional
Probab=99.14 E-value=1.4e-10 Score=99.22 Aligned_cols=71 Identities=24% Similarity=0.505 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.|+.|.. ..+++.|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE------------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC------------------------HHHHHhcC
Confidence 5899999999999999999999999999988654 77777655433 67889999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|.++|++++++ +|+++..
T Consensus 104 V~~~Ptlii~~----~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIFK----NGQVVDM 121 (139)
T ss_pred CCccCEEEEEE----CCEEEEE
Confidence 99999998886 7877644
No 181
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.14 E-value=2.7e-10 Score=93.90 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=55.6
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|+||++||++|+.+.|.+.++++++++....+.+..|+.+.+.. ..+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence 4799999999999999999999999999997643235555554433222 678899999
Q ss_pred CCCceEEEEcC
Q 014225 141 EGIPCLVVLQP 151 (428)
Q Consensus 141 ~~~P~~~lid~ 151 (428)
.++|+++++.+
T Consensus 77 ~~~Pt~~lf~~ 87 (114)
T cd02992 77 TGYPTLRYFPP 87 (114)
T ss_pred CCCCEEEEECC
Confidence 99999999985
No 182
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.6e-10 Score=96.00 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=96.7
Q ss_pred hhhhccCCCCccc-CCCCCceecccccCCc-EEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225 199 INLLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275 (428)
Q Consensus 199 ~~~~g~~~p~f~l-~~~g~~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is 275 (428)
.-.+|+.+|||+| |.+|. .++|....|+ +||++|| +...|.|.+....+++-|++++.. +.+|+++|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS 131 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLS 131 (211)
T ss_pred eeecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeec
Confidence 3346999999999 99999 9999999985 8888888 467899999999999999999875 78999999
Q ss_pred cCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccc-------eEEEECCCCc
Q 014225 276 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEGK 325 (428)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P-------~~~lid~~G~ 325 (428)
.| +....++|..+.+ +.+..+.|...++.+.+|+...| ..+|+|++|.
T Consensus 132 ~D-~s~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 132 GD-DSASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred cC-chHHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 99 5567778877765 66667899999999999987644 6788878764
No 183
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.14 E-value=8.4e-10 Score=100.48 Aligned_cols=133 Identities=20% Similarity=0.356 Sum_probs=102.5
Q ss_pred Cccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEEcCC---CHH
Q 014225 208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDR---DQT 281 (428)
Q Consensus 208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~iv~is~d~---~~~ 281 (428)
+|.+ +.+|+ .+++..++||+++|+|..+.|| .|..++..|.++.++.. .. +.++++++|++|+ .++
T Consensus 49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence 6999 99999 9999999999999999999999 69999999999999987 43 6789999999986 456
Q ss_pred HHHHHHh-cCC--ccccccCCcchhHHHHhcCcCc---------------cceEEEECCCCcEEeccccchhhcccccCC
Q 014225 282 SFESYFG-TMP--WLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQGRNLINLYQENAY 343 (428)
Q Consensus 282 ~~~~~~~-~~~--~~~~~~~~d~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 343 (428)
.+++|.. ... |..+....+...++++.|+|.. ...+++||++|+++...... ..
T Consensus 121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~------~~-- 192 (207)
T COG1999 121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG------EP-- 192 (207)
T ss_pred HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC------CC--
Confidence 7777777 221 4444444556678888888752 23579999999999875321 11
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 014225 344 PFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 344 p~~~~~~~~L~~~l~~~~~ 362 (428)
-+++.+.++.+++
T Consensus 193 ------~~~i~~~l~~l~~ 205 (207)
T COG1999 193 ------PEEIAADLKKLLK 205 (207)
T ss_pred ------hHHHHHHHHHHhh
Confidence 2566677766654
No 184
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.13 E-value=2.4e-10 Score=92.54 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 136 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 136 (428)
+||+++|.||++||++|+.+.|.+ .++.+.+++ + +.++.|+++.+.. ....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~--------------------~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP--------------------EITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH--------------------HHHHHHH
Confidence 579999999999999999999887 578888865 3 8888887764421 1168889
Q ss_pred hcCCCCCceEEEEcCCCCCCCcc
Q 014225 137 KFDIEGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 137 ~~~v~~~P~~~lid~~~~dG~i~ 159 (428)
.|++.++|+++++++ .+|+++
T Consensus 67 ~~~i~~~Pti~~~~~--~~g~~~ 87 (104)
T cd02953 67 RFGVFGPPTYLFYGP--GGEPEP 87 (104)
T ss_pred HcCCCCCCEEEEECC--CCCCCC
Confidence 999999999999984 136554
No 185
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.12 E-value=7.4e-10 Score=100.19 Aligned_cols=140 Identities=21% Similarity=0.320 Sum_probs=107.0
Q ss_pred hccCCC--Cccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 202 LTNHDR--GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 202 ~g~~~p--~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
+|.++- .|+| |.+|+ .++-.+|.||++|++|..+.|| .|..++..|.++.+++.++ .+..+.-|+|++|
T Consensus 113 ~gk~~iGGpF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~------~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 113 AGKPAIGGPFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK------PGLPPVPLFISVD 185 (280)
T ss_pred cCCCccCCceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc------CCCCccceEEEeC
Confidence 455443 5999 99999 9999999999999999999999 6999999999999988765 1223346899999
Q ss_pred C---CHHHHHHHHhcCC--ccccccCCcchhHHHHhcCcC--ccc-------------eEEEECCCCcEEeccccchhhc
Q 014225 278 R---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ--GIP-------------CLVIIGPEGKTVTKQGRNLINL 337 (428)
Q Consensus 278 ~---~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~--~~P-------------~~~lid~~G~i~~~~~~~~~~~ 337 (428)
+ +.+.+++|+++.+ .+.+.-..+....+++.|.|- ..| .+|||||+|+.+..+|++-
T Consensus 186 PeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~--- 262 (280)
T KOG2792|consen 186 PERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY--- 262 (280)
T ss_pred cccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccC---
Confidence 7 6778899999876 345555555667788888872 213 4799999999999887643
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHh
Q 014225 338 YQENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 338 ~g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
..++|.+.|.+...
T Consensus 263 -----------~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 263 -----------DADELADSILKHVA 276 (280)
T ss_pred -----------CHHHHHHHHHHHHH
Confidence 12566666665544
No 186
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.12 E-value=1.1e-09 Score=91.15 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=58.2
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
-.+|+|+|+|+++||++|+.+.+.. .++.+.+.. ++.+|.|+.+...+-.+.+.
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~~------------- 69 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIYM------------- 69 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHHH-------------
Confidence 4579999999999999999987632 245554433 46666666654432211111
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
......|++.++|+++++|++|++++..+.
T Consensus 70 --~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 70 --NAAQAMTGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred --HHHHHhcCCCCCCEEEEECCCCCEEeeeee
Confidence 223336799999999999999999988654
No 187
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.11 E-value=2.3e-10 Score=105.26 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=55.4
Q ss_pred cCCcEEEEEEec---cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 224 LVGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 224 ~~gk~vll~F~a---~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
+++...++.|++ +||++|+.+.|.+.++.+++. ++++..+++|.+.
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~-------------------- 65 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE-------------------- 65 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc--------------------
Confidence 344445666777 999999999999999998874 3566667776432
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEE
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~ 327 (428)
..++++.|+|.++||++++ ++|+.+
T Consensus 66 -~~~l~~~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 66 -DKEEAEKYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred -cHHHHHHcCCCccCEEEEE-eCCeee
Confidence 3789999999999999999 567665
No 188
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.11 E-value=2.9e-09 Score=109.14 Aligned_cols=181 Identities=15% Similarity=0.214 Sum_probs=105.5
Q ss_pred cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC--CCceEE
Q 014225 70 ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLV 147 (428)
Q Consensus 70 a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~ 147 (428)
.....+|......++++++++++. .+.+..+ +......+++.+++. .+|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~a~~~~~~--~i~f~~~------------------------d~~~~~~~~~~~~~~~~~~P~~v 297 (462)
T TIGR01130 244 DESLDPFEELRNRFLEAAKKFRGK--FVNFAVA------------------------DEEDFGRELEYFGLKAEKFPAVA 297 (462)
T ss_pred cCCchHHHHHHHHHHHHHHHCCCC--eEEEEEe------------------------cHHHhHHHHHHcCCCccCCceEE
Confidence 334556788888888888888652 2444433 222226677888887 699999
Q ss_pred EEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc---cc-CCCCCceecccc
Q 014225 148 VLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGY---LL-GHPPDEKVPVSS 223 (428)
Q Consensus 148 lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f---~l-~~~g~~~v~l~~ 223 (428)
+++. +|...+.. .....+.+.+..+.......... ......+.|.- .+ ...|. .+.-.-
T Consensus 298 i~~~---~~~~~y~~----------~~~~~~~~~i~~fi~~~~~g~~~---~~~~se~~p~~~~~~v~~l~~~-~f~~~v 360 (462)
T TIGR01130 298 IQDL---EGNKKYPM----------DQEEFSSENLEAFVKDFLDGKLK---PYLKSEPIPEDDEGPVKVLVGK-NFDEIV 360 (462)
T ss_pred EEeC---CcccccCC----------CcCCCCHHHHHHHHHHHhcCCCC---eeeccCCCCccCCCccEEeeCc-CHHHHh
Confidence 9998 66211110 00023333333332221110000 00011122221 11 23333 222111
Q ss_pred -cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 224 -LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 224 -~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
-.++.++|+||++||++|+.+.|.+.++++.++.. ..++.++.|+++.+
T Consensus 361 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~n----------------------- 410 (462)
T TIGR01130 361 LDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIAKMDATAN----------------------- 410 (462)
T ss_pred ccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCCC-----------------------
Confidence 14789999999999999999999999999999862 12578888877643
Q ss_pred hHHHHhcCcCccceEEEECCCCc
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGK 325 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~ 325 (428)
++.. |++.++|+++++.++++
T Consensus 411 -~~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 411 -DVPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred -ccCC-CCccccCEEEEEeCCCC
Confidence 1223 89999999999955544
No 189
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.11 E-value=1.8e-10 Score=95.38 Aligned_cols=76 Identities=21% Similarity=0.399 Sum_probs=56.4
Q ss_pred ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225 57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 136 (428)
Q Consensus 57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 136 (428)
...+||+|+|+|||+||++|+.+.|.+.+........ ..++.|.+|.+.+ ...+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~-----------------------~~~~ 68 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE-----------------------PKDE 68 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC-----------------------chhh
Confidence 3446899999999999999999999999977765432 3455566664422 1223
Q ss_pred hcCCCC--CceEEEEcCCCCCCCcccc
Q 014225 137 KFDIEG--IPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 137 ~~~v~~--~P~~~lid~~~~dG~i~~~ 161 (428)
.|++.+ +|+++++++ +|+++.+
T Consensus 69 ~~~~~g~~vPt~~f~~~---~Gk~~~~ 92 (117)
T cd02959 69 EFSPDGGYIPRILFLDP---SGDVHPE 92 (117)
T ss_pred hcccCCCccceEEEECC---CCCCchh
Confidence 566665 999999999 9988764
No 190
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.11 E-value=3.5e-10 Score=91.31 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=60.2
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.|.+.++.+.++.. .++.++.|+++.+ ...+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~----------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE--------DDVVIAKVDADEA----------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC--------CCEEEEEEECCCc----------------------chhh
Confidence 568999999999999999999999999998632 2577777777652 1678
Q ss_pred HHhcCcCccceEEEECCCCcEEec
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
++.|+|.++|++++++++|+....
T Consensus 68 ~~~~~i~~~P~~~~~~~~~~~~~~ 91 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEPVK 91 (105)
T ss_pred HHhCCCCCcCEEEEEeCCCCCccc
Confidence 999999999999999777654443
No 191
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.10 E-value=6.6e-10 Score=89.52 Aligned_cols=65 Identities=23% Similarity=0.460 Sum_probs=55.9
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.|.+.++++++... +.++.++++.. ..+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~id~~~~-----------------------~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI----------VKVGAVDADVH-----------------------QSL 64 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------ceEEEEECcch-----------------------HHH
Confidence 467999999999999999999999999888643 78888877644 678
Q ss_pred HHhcCcCccceEEEECCC
Q 014225 306 TKYFDVQGIPCLVIIGPE 323 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~ 323 (428)
++.|+|.++|++++++++
T Consensus 65 ~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHHCCCCccCEEEEECCC
Confidence 899999999999999544
No 192
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.10 E-value=3.6e-10 Score=91.19 Aligned_cols=73 Identities=18% Similarity=0.379 Sum_probs=57.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|.||++||++|+.+.|.+.++++++++.+ .+.++.++.+.+.. ..+++.|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~----------------------~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH----------------------DALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc----------------------HHHHHhCC
Confidence 46799999999999999999999999999997532 35565555543211 67889999
Q ss_pred CCCCceEEEEcCCCCCCCcc
Q 014225 140 IEGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~ 159 (428)
+.++|+++++. +|+++
T Consensus 73 i~~~Pt~~~~~----~g~~~ 88 (104)
T cd02997 73 VKGFPTFKYFE----NGKFV 88 (104)
T ss_pred CccccEEEEEe----CCCee
Confidence 99999988887 67654
No 193
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.09 E-value=1e-09 Score=90.34 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=54.0
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
++.++|+||++||++|+.+.|.|+++.+.+ + .+.++.|++|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence 355889999999999999999999998775 2 478888888754 678
Q ss_pred HHhcCcCccceEEEECCC
Q 014225 306 TKYFDVQGIPCLVIIGPE 323 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~ 323 (428)
++.|+|.++||+++++.+
T Consensus 68 ~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 68 AEKYGVERVPTTIFLQDG 85 (113)
T ss_pred HHHcCCCcCCEEEEEeCC
Confidence 999999999999999543
No 194
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.09 E-value=2.5e-10 Score=94.09 Aligned_cols=79 Identities=16% Similarity=0.398 Sum_probs=62.6
Q ss_pred CCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHH
Q 014225 60 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 132 (428)
Q Consensus 60 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 132 (428)
+|++|+|+||| +||++|+...|.|.+++++++++ +.++.|++|.... | .+.. .
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------w-----~d~~--~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------W-----RDPN--N 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------c-----cCcc--h
Confidence 57899999999 99999999999999999998743 7788888776531 1 0111 6
Q ss_pred HHHhhcCCC-CCceEEEEcCCCCCCCcccc
Q 014225 133 ALNRKFDIE-GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 133 ~l~~~~~v~-~~P~~~lid~~~~dG~i~~~ 161 (428)
.+++.|++. ++||+++++. .++++..
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~---~~~l~~~ 106 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKT---PQRLVED 106 (119)
T ss_pred hhHhccCcccCCCEEEEEcC---Cceecch
Confidence 788899998 9999999986 5555543
No 195
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.08 E-value=5.2e-10 Score=89.41 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+|+++|.||++||++|+...|.+.++.+++.+. +.++.|+.|.. ..+.+.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~------------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED------------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC------------------------HHHHHHCC
Confidence 4689999999999999999999999999998653 77777766543 56788999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.++|++++++ +|+++.+
T Consensus 65 v~~vPt~~i~~----~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFFK----DKELVKE 82 (97)
T ss_pred CeeccEEEEEE----CCeEEEE
Confidence 99999999996 7877644
No 196
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.08 E-value=3.2e-10 Score=93.45 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=62.9
Q ss_pred CCcEEEEEEec-------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225 225 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 297 (428)
Q Consensus 225 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~ 297 (428)
+|++|+|+||| +||++|+.+.|.+.++.+++++ ++.++.|.+|... .
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~ 73 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y 73 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence 57899999999 9999999999999999998864 3788888887542 1
Q ss_pred CCcchhHHHHhcCcC-ccceEEEECCCCcEEec
Q 014225 298 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 298 ~~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~ 329 (428)
..+...++...|+|. ++||+++++..++++..
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 112246888999998 99999999665566544
No 197
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.08 E-value=3.9e-10 Score=91.25 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225 60 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 137 (428)
Q Consensus 60 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 137 (428)
.|.+++|+||++| ||+|+...|.|.+++++|.+. +.++-|++|.. ..++..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~------------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE------------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC------------------------HHHHHH
Confidence 5789999999997 999999999999999999765 66777766544 789999
Q ss_pred cCCCCCceEEEEcCCCCCCCcccc
Q 014225 138 FDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 138 ~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|+|.++||++++. +|+++..
T Consensus 79 f~V~sIPTli~fk----dGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFFR----DGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEEE----CCEEEEE
Confidence 9999999999999 7887755
No 198
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.08 E-value=6.4e-10 Score=98.66 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=59.8
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++|||.||++||++|+.+.|.|.+++.+|. .+.++-|+++. ..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d~------------------------~~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRASA------------------------TGA 127 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEeccc------------------------hhh
Confidence 4599999999999999999999999998874 46777776662 257
Q ss_pred HHhcCcCccceEEEECCCCcEEecccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
+..|+|.++||++++ ++|+++.+..+
T Consensus 128 ~~~f~v~~vPTllly-k~G~~v~~~vG 153 (175)
T cd02987 128 SDEFDTDALPALLVY-KGGELIGNFVR 153 (175)
T ss_pred HHhCCCCCCCEEEEE-ECCEEEEEEec
Confidence 888999999999999 89999987543
No 199
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.07 E-value=4.6e-10 Score=92.03 Aligned_cols=95 Identities=21% Similarity=0.366 Sum_probs=64.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+||+++|.||++||++|+.+.+.+.+..+-......++.++.++++.......++....+. .. -......+.+.|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KN-VRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SS-CHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hh-hhHHHHHHHHHcC
Confidence 5899999999999999999999888654422221113889999888776555555443321 11 1223378999999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.++|+++++|+ +|+++..
T Consensus 80 v~gtPt~~~~d~---~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDK---DGKIVYR 98 (112)
T ss_dssp --SSSEEEECTT---TSCEEEE
T ss_pred CCccCEEEEEcC---CCCEEEE
Confidence 999999999999 9987743
No 200
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.06 E-value=6.3e-10 Score=88.69 Aligned_cols=70 Identities=21% Similarity=0.421 Sum_probs=56.8
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|+.+.. ..+++.|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~------------------------~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL------------------------PEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC------------------------HHHHHhcCC
Confidence 68999999999999999999999999999722 366666543221 678899999
Q ss_pred CCCceEEEEcCCCCCCCcccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~ 161 (428)
.++|+++++. +|+++.+
T Consensus 67 ~~~Pt~~~~~----~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFFR----NGTIVDR 83 (97)
T ss_pred ccccEEEEEE----CCEEEEE
Confidence 9999999996 7877644
No 201
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.9e-10 Score=115.22 Aligned_cols=127 Identities=21% Similarity=0.378 Sum_probs=82.4
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|.++.|.+.++.+.+++. +.+..|.++ . ...+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~----------~~~~~vd~~--~---------------------~~~~ 93 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK----------VKIGAVDCD--E---------------------HKDL 93 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCc----------eEEEEeCch--h---------------------hHHH
Confidence 467999999999999999999999999988754 445544444 3 3889
Q ss_pred HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc----CCCC-cccccccccee--
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN----LPRS-EFHIGHRHELN-- 378 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~----~~~~-~~~~~~~~~~~-- 378 (428)
++.|+|.++||+.++.++..++...+.. ..+.+...+...+.. .... +..... +...
T Consensus 94 ~~~y~i~gfPtl~~f~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~ 157 (383)
T KOG0191|consen 94 CEKYGIQGFPTLKVFRPGKKPIDYSGPR---------------NAESLAEFLIKELEPSVKKLVEGEVFELTK-DNFDET 157 (383)
T ss_pred HHhcCCccCcEEEEEcCCCceeeccCcc---------------cHHHHHHHHHHhhccccccccCCceEEccc-cchhhh
Confidence 9999999999999996664555554311 123333333333322 2222 111111 1110
Q ss_pred ----eeeccCCCCCcccccccCCCCce
Q 014225 379 ----LVSEGTGGGPFICCDCDEQGSGW 401 (428)
Q Consensus 379 ----~~~~~~~~~~~~c~~C~~~g~~~ 401 (428)
--.|...+.+|||+||+++.+.|
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~ 184 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEW 184 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHH
Confidence 01134567899999999998777
No 202
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.7e-09 Score=89.42 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=88.2
Q ss_pred CCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC------
Q 014225 206 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 278 (428)
Q Consensus 206 ~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~------ 278 (428)
.-+|.+ +.+|+ .+++++++||++||.-.|+.|+.-. ....|+.||++|+++ ++.|+++.+++
T Consensus 5 ~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QEP 73 (162)
T COG0386 5 IYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQEP 73 (162)
T ss_pred cccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCCC
Confidence 347888 99999 9999999999999999999998877 446689999999988 89999999963
Q ss_pred -CHHHHHHHHhcCCccccccCCc------chh----HHHHhcC-------cCccceEEEECCCCcEEeccc
Q 014225 279 -DQTSFESYFGTMPWLALPFGDP------TIK----ELTKYFD-------VQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~d------~~~----~~~~~~~-------v~~~P~~~lid~~G~i~~~~~ 331 (428)
+.+++++|+...-..+||+..- ... -|...-. |+.-=+-||||++|+|+.|++
T Consensus 74 g~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 74 GSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred CCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 5678999999766688887321 111 2222221 111116799999999999975
No 203
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.6e-10 Score=97.26 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=96.7
Q ss_pred cccccccccCc-cccC-CCC---EEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-
Q 014225 35 SSLLASKDRDY-LLNQ-HGT---QVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED- 107 (428)
Q Consensus 35 ~~~~g~~~pdf-l~~~-~G~---~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~- 107 (428)
.+++|..+||| +... .|. +++++++.||.++|+|| +..-+-|..++..+++.|++|+++| +++|+||+|..
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~f 79 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVF 79 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHH
Confidence 35789999999 7666 674 89999999999999999 8888899999999999999999998 99999999975
Q ss_pred -hHHHHHHHhcCC-C--ceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225 108 -LNAFNNYRACMP-W--LAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 108 -~~~~~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~ 161 (428)
+..|.+..++.+ . ..+|. -.|.+.++++.||+- .+=.++|||+ +|.+...
T Consensus 80 sH~aW~~~~~~~~gi~~i~~Pm-iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp---~g~ir~~ 139 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPM-IADPKGEIARAYGVLHPEEGLALRGTFIIDP---DGVIRHI 139 (194)
T ss_pred HHHHHHhcHHhcCCccceecce-EEcCchhHHHHcCCcccCCCcceeEEEEECC---CCeEEEE
Confidence 466777655433 2 34443 223338999999984 3457999999 9988654
No 204
>PTZ00051 thioredoxin; Provisional
Probab=99.05 E-value=6.1e-10 Score=88.97 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.+++++|+||++||++|+.+.|.+.++++++.+ +.++.|+.+.. ..+++.|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~------------------------~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL------------------------SEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch------------------------HHHHHHCC
Confidence 468999999999999999999999999987642 55665544321 67889999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.++|+++++. +|+++..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~ 86 (98)
T PTZ00051 69 ITSMPTFKVFK----NGSVVDT 86 (98)
T ss_pred CceeeEEEEEe----CCeEEEE
Confidence 99999988885 7877754
No 205
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.05 E-value=5.7e-10 Score=89.55 Aligned_cols=67 Identities=22% Similarity=0.434 Sum_probs=56.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|.||++||++|+.+.|.++++++.++..+ ++.++.++.|.. ..+++.|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~------------------------~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE------------------------KDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch------------------------HHHHHhCC
Confidence 68999999999999999999999999999997642 366655544322 67889999
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
+.++|+++++++
T Consensus 67 i~~~P~~~~~~~ 78 (102)
T TIGR01126 67 VSGFPTIKFFPK 78 (102)
T ss_pred CCcCCEEEEecC
Confidence 999999999997
No 206
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.9e-10 Score=100.26 Aligned_cols=96 Identities=22% Similarity=0.384 Sum_probs=73.9
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
++..-+|.|+|+|+|.||+||+...|.+.++..+|. +..++-|.+|.-
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-----------~aVFlkVdVd~c--------------------- 63 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-----------GAVFLKVDVDEC--------------------- 63 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-----------ccEEEEEeHHHh---------------------
Confidence 333446899999999999999999999999999986 346777776633
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCC
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 366 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~ 366 (428)
...+..+||+++||++++ .+|+-+.+ .-|+++ ..|++.+.+.+...+.
T Consensus 64 --~~taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 64 --RGTAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTSAA 111 (288)
T ss_pred --hchhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccCcc
Confidence 567888999999999999 88877665 233333 6778888877765443
No 207
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.04 E-value=1.6e-09 Score=83.38 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=51.4
Q ss_pred EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225 229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 308 (428)
Q Consensus 229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 308 (428)
.+..||++||++|+...|.|+++.++++. .+.++.|+.+.+ .++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence 46789999999999999999999988864 378888887755 567788
Q ss_pred cCcCccceEEEECCCCcE
Q 014225 309 FDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 309 ~~v~~~P~~~lid~~G~i 326 (428)
|++.++|++++ +|+.
T Consensus 49 ~~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 49 YGIMAVPAIVI---NGDV 63 (82)
T ss_pred cCCccCCEEEE---CCEE
Confidence 99999999975 6664
No 208
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.03 E-value=1.1e-09 Score=87.25 Aligned_cols=73 Identities=23% Similarity=0.438 Sum_probs=60.1
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|.||++||++|+.+.+.+.++.+.++.. .++.++.|+++.+ ..+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~-----------------------~~~ 63 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVAKVDCTAN-----------------------NDL 63 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC--------CceEEEEeeccch-----------------------HHH
Confidence 458999999999999999999999999988511 2578888877643 688
Q ss_pred HHhcCcCccceEEEECCCCcEEec
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
++.|+|.++|++++++++|+...+
T Consensus 64 ~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 64 CSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHhCCCCCCCEEEEEcCCCccccc
Confidence 999999999999999877654444
No 209
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.03 E-value=1.1e-09 Score=90.04 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++|+|+||++||++|+.+.|.|.++.+++.+ +.++-|++|.. ..+++.|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~------------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA------------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC------------------------HHHHHHCC
Confidence 357999999999999999999999999998743 66776655543 67899999
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.++|+++++. +|+.+.+
T Consensus 73 v~~vPt~l~fk----~G~~v~~ 90 (113)
T cd02989 73 IKVLPTVILFK----NGKTVDR 90 (113)
T ss_pred CccCCEEEEEE----CCEEEEE
Confidence 99999999999 6877754
No 210
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.02 E-value=1.5e-09 Score=90.51 Aligned_cols=79 Identities=18% Similarity=0.442 Sum_probs=57.3
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC-cchhH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKE 304 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~-d~~~~ 304 (428)
|+.++|+|+++|||+|+.+.|.|.++.++. ++.++.|++|.+.. ..... ....+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~~ 77 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLTA 77 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHHH
Confidence 577899999999999999999999998873 35689999985420 00000 00124
Q ss_pred HHHhc----CcCccceEEEECCCCcEEecc
Q 014225 305 LTKYF----DVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 305 ~~~~~----~v~~~P~~~lid~~G~i~~~~ 330 (428)
+.+.| +|.++||++++ ++|+.+.+.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred HHHHcCCcccCCCCCEEEEE-eCCeEEEEE
Confidence 44444 46679999999 999998874
No 211
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.02 E-value=1.3e-09 Score=87.55 Aligned_cols=69 Identities=26% Similarity=0.631 Sum_probs=59.2
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|.||++||++|+.+.|.|.++++++.+ + +.++.|+.+.. ..+++.|++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~------------------------~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDEN------------------------KELCKKYGV 69 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTS------------------------HHHHHHTTC
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhcc------------------------chhhhccCC
Confidence 68999999999999999999999999999987 3 77777655433 789999999
Q ss_pred CCCceEEEEcCCCCCCCccc
Q 014225 141 EGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~ 160 (428)
.++|+++++. +|+...
T Consensus 70 ~~~Pt~~~~~----~g~~~~ 85 (103)
T PF00085_consen 70 KSVPTIIFFK----NGKEVK 85 (103)
T ss_dssp SSSSEEEEEE----TTEEEE
T ss_pred CCCCEEEEEE----CCcEEE
Confidence 9999999998 575553
No 212
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.00 E-value=9.9e-10 Score=100.79 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=56.9
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|+.+. . ..+++.|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~--~----------------------~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATR--A----------------------LNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcc--c----------------------HHHHHHcCC
Confidence 579999999999999999999999999999753 6665553332 2 678899999
Q ss_pred CCCceEEEEcCCCCCCCccc
Q 014225 141 EGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~ 160 (428)
.++|++++++ +|+++.
T Consensus 105 ~~~PTl~~f~----~G~~v~ 120 (224)
T PTZ00443 105 KGYPTLLLFD----KGKMYQ 120 (224)
T ss_pred CcCCEEEEEE----CCEEEE
Confidence 9999999999 676553
No 213
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.00 E-value=1e-09 Score=90.68 Aligned_cols=70 Identities=13% Similarity=0.251 Sum_probs=57.6
Q ss_pred CCEEEEEEecCCChh--hh--hhHHHHHHHHHHHh-cCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 61 GKVTALYFSANWYPP--CG--NFTGVLVDVYEELR-NNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 61 gk~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~~-~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
..++|++||++||+| |+ ...|.+.+++.++- +.+ +.++-|++|.. ..++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~------------------------~~La 80 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKD------------------------AKVA 80 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCC------------------------HHHH
Confidence 359999999999988 99 77888999888872 223 77887776655 7899
Q ss_pred hhcCCCCCceEEEEcCCCCCCCccc
Q 014225 136 RKFDIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG~i~~ 160 (428)
+.|+|.++||++++. ||+++.
T Consensus 81 ~~~~I~~iPTl~lfk----~G~~v~ 101 (120)
T cd03065 81 KKLGLDEEDSIYVFK----DDEVIE 101 (120)
T ss_pred HHcCCccccEEEEEE----CCEEEE
Confidence 999999999999998 787653
No 214
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.99 E-value=1.1e-09 Score=90.05 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|+||++||++|+.+.|.|+++++++.+ +.++-|+.| . ..+++.|++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~------------------------~-~~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAE------------------------K-AFLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEch------------------------h-hHHHHhcCC
Confidence 58999999999999999999999999999853 555555332 1 177889999
Q ss_pred CCCceEEEEcCCCCCCCcccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~ 161 (428)
.++|+++++. +|+.+.+
T Consensus 75 ~~~Pt~~~f~----~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVYK----NGELIDN 91 (113)
T ss_pred CcCCEEEEEE----CCEEEEE
Confidence 9999999998 7887755
No 215
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.98 E-value=2.3e-09 Score=86.27 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=54.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|.||++||++|+.+.|.+.+++++++.. +.++.++.|.. ..+++.|++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~------------------------~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH------------------------QSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch------------------------HHHHHHCCC
Confidence 567999999999999999999999999998754 67777655432 678899999
Q ss_pred CCCceEEEEcC
Q 014225 141 EGIPCLVVLQP 151 (428)
Q Consensus 141 ~~~P~~~lid~ 151 (428)
.++|+++++++
T Consensus 71 ~~~P~~~~~~~ 81 (103)
T cd03001 71 RGFPTIKVFGA 81 (103)
T ss_pred CccCEEEEECC
Confidence 99999999985
No 216
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.97 E-value=5.2e-09 Score=87.16 Aligned_cols=82 Identities=21% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
-++|+|+|+|+++||++|+.+.+.. .++.+.+.+. +.+|.|+.+...+..+.++ ....
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~----------------~~~~ 73 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYM----------------NAAQ 73 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHH----------------HHHH
Confidence 3689999999999999999987632 2455555443 7777666655433111111 2233
Q ss_pred hhcCCCCCceEEEEcCCCCCCCccccc
Q 014225 136 RKFDIEGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG~i~~~~ 162 (428)
..|++.++|+++|+++ +|++++..
T Consensus 74 ~~~~~~G~Pt~vfl~~---~G~~~~~~ 97 (124)
T cd02955 74 AMTGQGGWPLNVFLTP---DLKPFFGG 97 (124)
T ss_pred HhcCCCCCCEEEEECC---CCCEEeee
Confidence 3679999999999999 99998764
No 217
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.96 E-value=3.3e-09 Score=85.52 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|.||++||++|+.+.|.+.++++.++..+ ++.++.++.+.. . ..+++.|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~----------------------~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANED-DVVIAKVDADEA-N----------------------KDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCC-CEEEEEEECCCc-c----------------------hhhHHhCCC
Confidence 5799999999999999999999999999987321 366666554431 1 678889999
Q ss_pred CCCceEEEEcC
Q 014225 141 EGIPCLVVLQP 151 (428)
Q Consensus 141 ~~~P~~~lid~ 151 (428)
.++|+++++++
T Consensus 74 ~~~P~~~~~~~ 84 (105)
T cd02998 74 SGFPTLKFFPK 84 (105)
T ss_pred CCcCEEEEEeC
Confidence 99999999996
No 218
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.95 E-value=2.6e-09 Score=96.04 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=58.0
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++|||.||++||++|+.+.|.|.+++.+|. .+.++-|.++. .
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad~--------------------------~ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIISTQ--------------------------C 144 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhHH--------------------------h
Confidence 4689999999999999999999999999975 35777776651 2
Q ss_pred HHhcCcCccceEEEECCCCcEEecccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
...|++.++||++++ ++|+++.+..+
T Consensus 145 ~~~~~i~~lPTlliy-k~G~~v~~ivG 170 (192)
T cd02988 145 IPNYPDKNLPTILVY-RNGDIVKQFIG 170 (192)
T ss_pred HhhCCCCCCCEEEEE-ECCEEEEEEeC
Confidence 467999999999999 99999988544
No 219
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.95 E-value=3.4e-09 Score=84.68 Aligned_cols=68 Identities=24% Similarity=0.480 Sum_probs=57.2
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|.||++||++|+...|.++++.+++.+. +.++.|+.|.. ..+++.|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN------------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHHcCC
Confidence 579999999999999999999999999888643 77887765543 567888999
Q ss_pred CCCceEEEEcCCCCCCCcc
Q 014225 141 EGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~ 159 (428)
.++|+++++. +|+++
T Consensus 67 ~~~P~~~~~~----~g~~~ 81 (101)
T TIGR01068 67 RSIPTLLLFK----NGKEV 81 (101)
T ss_pred CcCCEEEEEe----CCcEe
Confidence 9999999996 67654
No 220
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.94 E-value=3.5e-09 Score=106.69 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=58.3
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 303 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 303 (428)
..+++|||+|||+||++|+.+.|.|++++++|++. ++.++.|++|.+. ..
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~ 418 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KE 418 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cH
Confidence 46789999999999999999999999999999754 5888889888652 12
Q ss_pred HHHHhcCcCccceEEEECCCC
Q 014225 304 ELTKYFDVQGIPCLVIIGPEG 324 (428)
Q Consensus 304 ~~~~~~~v~~~P~~~lid~~G 324 (428)
...+.|+|.++||++++ ++|
T Consensus 419 ~~~~~~~I~~~PTii~F-k~g 438 (463)
T TIGR00424 419 FAKQELQLGSFPTILFF-PKH 438 (463)
T ss_pred HHHHHcCCCccceEEEE-ECC
Confidence 33468999999999999 444
No 221
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.93 E-value=3.8e-09 Score=88.04 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
.|+.++|+|+++|||+|+.+.|.|.++.++. + ..+..|++|.+.. ....+.+....+.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~--~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---K--APIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---C--CcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 4678999999999999999999999998872 2 6688888886531 00111111245556654
Q ss_pred ----CCCCceEEEEcCCCCCCCcccc
Q 014225 140 ----IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 ----v~~~P~~~lid~~~~dG~i~~~ 161 (428)
+.++|+++++. +|+.+.+
T Consensus 84 i~~~i~~~PT~v~~k----~Gk~v~~ 105 (122)
T TIGR01295 84 IPTSFMGTPTFVHIT----DGKQVSV 105 (122)
T ss_pred CcccCCCCCEEEEEe----CCeEEEE
Confidence 55699999999 7987755
No 222
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8e-09 Score=88.07 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=95.0
Q ss_pred ccCCCCccc----CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 203 TNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 203 g~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
..++|+|.- |..-+ .++|++++||+|+++||. .+.-.|..+.-.+.+.+.+|+.. +-+|+++|+|
T Consensus 7 ~~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~D 76 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTD 76 (196)
T ss_pred CCCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEecc
Confidence 456677753 44445 899999999999999994 67778999999999999999987 8999999999
Q ss_pred C--CHHHHHHHHhcCCc---cccccCCcchhHHHHhcCc------CccceEEEECCCCcEEeccc
Q 014225 278 R--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDV------QGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 278 ~--~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~ 331 (428)
. +.-+|...-++.+. +++|++.|.+.++++.||| -.+..++|||++|.++....
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~ 141 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITI 141 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeee
Confidence 5 23345554444443 5699999999999999998 24567999999998887543
No 223
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.90 E-value=6.4e-09 Score=83.75 Aligned_cols=67 Identities=21% Similarity=0.463 Sum_probs=54.2
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
+++++|+||++||++|+.+.|.+.++.+.+++. .++.++.|+++. .++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~------------------------~~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATA------------------------NDV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcc------------------------hhh
Confidence 578999999999999999999999999998752 257777776653 245
Q ss_pred HHhcCcCccceEEEECCCC
Q 014225 306 TKYFDVQGIPCLVIIGPEG 324 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G 324 (428)
...+++.++|+++++.+++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhccCCCCCEEEEEcCCC
Confidence 6778899999999995444
No 224
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.90 E-value=5.8e-09 Score=85.79 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
++.++|+||++||++|+...|.|.++.+.+ +. +.+..|++|.. ..+++.|++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~------------------------~~l~~~~~v 73 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED------------------------KEKAEKYGV 73 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC------------------------HHHHHHcCC
Confidence 457899999999999999999999998876 32 77777766643 678899999
Q ss_pred CCCceEEEEcC
Q 014225 141 EGIPCLVVLQP 151 (428)
Q Consensus 141 ~~~P~~~lid~ 151 (428)
.++|++++++.
T Consensus 74 ~~vPt~~i~~~ 84 (113)
T cd02975 74 ERVPTTIFLQD 84 (113)
T ss_pred CcCCEEEEEeC
Confidence 99999999984
No 225
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.89 E-value=9e-09 Score=81.82 Aligned_cols=67 Identities=18% Similarity=0.375 Sum_probs=55.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++++|.||++||++|+...|.+.++++.++.. .++.++.|+.+.. ..+++.|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~------------------------~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTAN------------------------NDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccch------------------------HHHHHhCC
Confidence 4569999999999999999999999999998521 1377777655432 68899999
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
+.++|+++++++
T Consensus 69 i~~~Pt~~~~~~ 80 (101)
T cd02961 69 VRGYPTIKLFPN 80 (101)
T ss_pred CCCCCEEEEEcC
Confidence 999999999997
No 226
>PLN02309 5'-adenylylsulfate reductase
Probab=98.88 E-value=9.1e-09 Score=103.69 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=57.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.+++++|+||++||++|+.+.|.+.+++++|... ++.|+.|++|.+. ..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~~----------------------~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGDQ----------------------KE 412 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCcc----------------------hH
Confidence 5789999999999999999999999999998754 6888888888331 45
Q ss_pred HHH-hcCcCccceEEEECCC
Q 014225 305 LTK-YFDVQGIPCLVIIGPE 323 (428)
Q Consensus 305 ~~~-~~~v~~~P~~~lid~~ 323 (428)
++. .|+|.++||++++.++
T Consensus 413 la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred HHHhhCCCceeeEEEEEeCC
Confidence 665 6999999999999443
No 227
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.88 E-value=1.3e-08 Score=84.91 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=65.5
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
-.||+|+|+|++.||++|+.+...+- ++.+..+. ++.+|-+..|...
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~----------~Fv~V~l~~d~td-------------------- 70 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE----------DFIMLNLVHETTD-------------------- 70 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh----------CeEEEEEEeccCC--------------------
Confidence 35899999999999999999887653 23333322 3544444443221
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
.... ..+ .++|+++++|++|+++.+--+ .++-..|-..+++++.|.+.+++++.
T Consensus 71 --~~~~-~~g-~~vPtivFld~~g~vi~~i~G----y~~~~~~~y~~~~~~~~~~~m~~a~~ 124 (130)
T cd02960 71 --KNLS-PDG-QYVPRIMFVDPSLTVRADITG----RYSNRLYTYEPADIPLLIENMKKALK 124 (130)
T ss_pred --CCcC-ccC-cccCeEEEECCCCCCcccccc----cccCccceeCcCcHHHHHHHHHHHHH
Confidence 0000 123 579999999999998887543 34444555667778888888877654
No 228
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.87 E-value=1.5e-08 Score=78.99 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=58.3
Q ss_pred cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225 227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 306 (428)
Q Consensus 227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 306 (428)
++++|.||++||++|..+.+.+.++.++ . . ++.++.|+++.+ ..+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~---------~~~~~~i~~~~~-----------------------~~~~ 56 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-P---------KVKFVKVDVDEN-----------------------PELA 56 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C-C---------CceEEEEECCCC-----------------------hhHH
Confidence 7899999999999999999999998877 2 2 588888888754 6788
Q ss_pred HhcCcCccceEEEECCCCcEEecc
Q 014225 307 KYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 307 ~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
+.|++.++|+++++ .+|+++...
T Consensus 57 ~~~~v~~~P~~~~~-~~g~~~~~~ 79 (93)
T cd02947 57 EEYGVRSIPTFLFF-KNGKEVDRV 79 (93)
T ss_pred HhcCcccccEEEEE-ECCEEEEEE
Confidence 89999999999999 677766553
No 229
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9.3e-09 Score=86.78 Aligned_cols=110 Identities=18% Similarity=0.287 Sum_probs=88.3
Q ss_pred cccccccCc-cccCCCCEEecccCCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 113 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~ 113 (428)
..|+.+||| |.|.+|+.|+|..+.|+ +|+++|| +.--|-|.+..-.++..|++++..+ .+++++|.|.... -++
T Consensus 64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~s-qKa 140 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSAS-QKA 140 (211)
T ss_pred ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchHH-HHH
Confidence 579999999 99999999999999875 8888888 5667889999999999999999987 9999999987643 677
Q ss_pred HHhcCCCceeccCChHHHHHHHhhcCCCCCc-------eEEEEcC
Q 014225 114 YRACMPWLAVPYSDLETKKALNRKFDIEGIP-------CLVVLQP 151 (428)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P-------~~~lid~ 151 (428)
|..+++......+|.. .++.+.+|+...| ..+++++
T Consensus 141 F~sKqnlPYhLLSDpk--~e~ik~lGa~k~p~gg~~~Rsh~if~k 183 (211)
T KOG0855|consen 141 FASKQNLPYHLLSDPK--NEVIKDLGAPKDPFGGLPGRSHYIFDK 183 (211)
T ss_pred hhhhccCCeeeecCcc--hhHHHHhCCCCCCCCCcccceEEEEec
Confidence 7766654333344555 7888888886644 4667775
No 230
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.86 E-value=2.6e-08 Score=90.71 Aligned_cols=114 Identities=19% Similarity=0.400 Sum_probs=92.5
Q ss_pred Cc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHh-cCCCcEEEEEEecCC---ChHHHHHHHh-
Q 014225 44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELR-NNGSDFEVVFVSSDE---DLNAFNNYRA- 116 (428)
Q Consensus 44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~ii~vs~D~---~~~~~~~~~~- 116 (428)
+| |++.+|+.+++..++||+++|+|..+.|| .|...+..|.++.+++. ..+.++++++|++|. +.+.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 79 99999999999999999999999999999 99999999999999998 666789999999984 4566777777
Q ss_pred cC--CCceeccCChHHHHHHHhhcCCCC---------------CceEEEEcCCCCCCCcccc
Q 014225 117 CM--PWLAVPYSDLETKKALNRKFDIEG---------------IPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 117 ~~--~~~~~~~~d~~~~~~l~~~~~v~~---------------~P~~~lid~~~~dG~i~~~ 161 (428)
.. .|..+.. ..+..+.+++.|++.. ...++++|+ +|++...
T Consensus 129 ~~~~~~~~ltg-~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~---~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTG-TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA---DGRFLGT 186 (207)
T ss_pred cCCCCeeeeeC-CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC---CCeEEEE
Confidence 22 2555544 3555588999888752 345788888 8877644
No 231
>PTZ00102 disulphide isomerase; Provisional
Probab=98.86 E-value=1.7e-08 Score=104.22 Aligned_cols=72 Identities=21% Similarity=0.430 Sum_probs=59.4
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+++.++|.|||+||++|+++.|.+.++++.++.. ..++.++.|+++.+ ..
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~~-----------------------~~ 97 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASVDATEE-----------------------ME 97 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCCC-----------------------HH
Confidence 4689999999999999999999999999888755 34567777766544 68
Q ss_pred HHHhcCcCccceEEEECCCCcE
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i 326 (428)
+++.|+|.++||+++++.++.+
T Consensus 98 l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 98 LAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHhcCCCcccEEEEEECCceE
Confidence 9999999999999999554444
No 232
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.85 E-value=7.5e-09 Score=104.34 Aligned_cols=68 Identities=16% Similarity=0.383 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++++|+|+|||+||++|+.+.|.+.++++++++.+ +.++.|++|.+.. ....+.|+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~----------------------~~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK----------------------EFAKQELQ 425 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc----------------------HHHHHHcC
Confidence 67899999999999999999999999999998765 7888887775522 33456899
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
|.++||++++.+
T Consensus 426 I~~~PTii~Fk~ 437 (463)
T TIGR00424 426 LGSFPTILFFPK 437 (463)
T ss_pred CCccceEEEEEC
Confidence 999999999985
No 233
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.82 E-value=2.1e-08 Score=80.71 Aligned_cols=65 Identities=15% Similarity=0.424 Sum_probs=52.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+.+. ..+...+++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-------------------------~~~~~~~~~ 71 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-------------------------NDVPSEFVV 71 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc-------------------------hhhhhhccC
Confidence 589999999999999999999999999999773 236666655432 234566788
Q ss_pred CCCceEEEEcC
Q 014225 141 EGIPCLVVLQP 151 (428)
Q Consensus 141 ~~~P~~~lid~ 151 (428)
.++|+++++.+
T Consensus 72 ~~~Pt~~~~~~ 82 (104)
T cd02995 72 DGFPTILFFPA 82 (104)
T ss_pred CCCCEEEEEcC
Confidence 99999999985
No 234
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.8e-09 Score=94.52 Aligned_cols=72 Identities=17% Similarity=0.371 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
++.-.+|.|+|+|+|+||+||+++.|.+..+..+|+. ..++-|++| +- +..+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd--~c----------------------~~ta 67 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVD--EC----------------------RGTA 67 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHH--Hh----------------------hchh
Confidence 4444579999999999999999999999999999954 445555443 22 6777
Q ss_pred hhcCCCCCceEEEEcCCCCCCCcc
Q 014225 136 RKFDIEGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG~i~ 159 (428)
..+||.++||++++. ||.-+
T Consensus 68 a~~gV~amPTFiff~----ng~ki 87 (288)
T KOG0908|consen 68 ATNGVNAMPTFIFFR----NGVKI 87 (288)
T ss_pred hhcCcccCceEEEEe----cCeEe
Confidence 889999999999999 57444
No 235
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.81 E-value=1.8e-08 Score=105.60 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=58.5
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
.+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.|+++.+. +
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~-------------------~ 521 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANN-------------------A 521 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCC-------------------h
Confidence 4589999999999999999988764 45555553 4677778776432 1
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEE
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~ 327 (428)
...++.++|++.++|+++++|++|+++
T Consensus 522 ~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 522 EDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred hhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 236789999999999999999999985
No 236
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.80 E-value=1.1e-08 Score=90.62 Aligned_cols=68 Identities=13% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++|+|+||++||++|+.+.|.|.++++++.. +.++-|++|. ..++..|++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~-------------------------~~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASA-------------------------TGASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccc-------------------------hhhHHhCCC
Confidence 46999999999999999999999999999842 6666664431 156778999
Q ss_pred CCCceEEEEcCCCCCCCcccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~ 161 (428)
.++||++++. +|+++.+
T Consensus 134 ~~vPTlllyk----~G~~v~~ 150 (175)
T cd02987 134 DALPALLVYK----GGELIGN 150 (175)
T ss_pred CCCCEEEEEE----CCEEEEE
Confidence 9999999998 7987754
No 237
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-08 Score=101.55 Aligned_cols=77 Identities=22% Similarity=0.435 Sum_probs=62.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
....++|.||||||++|++++|.+.++++.++.. +..+.+.-|....+ .+
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~-------~s~i~LakVDat~~-----------------------~~ 90 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE-------GSPVKLAKVDATEE-----------------------SD 90 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc-------CCCceeEEeecchh-----------------------hh
Confidence 3467899999999999999999999999999876 45566666554433 78
Q ss_pred HHHhcCcCccceEEEECCCCcE-Eecccc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKT-VTKQGR 332 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i-~~~~~~ 332 (428)
++.+|+|+++||+-++ ++|+. ....|+
T Consensus 91 ~~~~y~v~gyPTlkiF-rnG~~~~~Y~G~ 118 (493)
T KOG0190|consen 91 LASKYEVRGYPTLKIF-RNGRSAQDYNGP 118 (493)
T ss_pred hHhhhcCCCCCeEEEE-ecCCcceeccCc
Confidence 9999999999999999 99985 444443
No 238
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.75 E-value=4.8e-08 Score=78.64 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=57.1
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
.|+++++.|+++||++|..+.|.+.+++++|+++ +.++.|++|.. ..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~~-----------------------~~ 57 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADDF-----------------------GR 57 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHhh-----------------------HH
Confidence 3789999999999999999999999999999865 78888777643 56
Q ss_pred HHHhcCcC--ccceEEEECC
Q 014225 305 LTKYFDVQ--GIPCLVIIGP 322 (428)
Q Consensus 305 ~~~~~~v~--~~P~~~lid~ 322 (428)
+++.||+. ++|++++++.
T Consensus 58 ~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 58 HLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHHcCCChhhCCEEEEEec
Confidence 89999999 9999999966
No 239
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.75 E-value=4.2e-08 Score=90.85 Aligned_cols=95 Identities=21% Similarity=0.374 Sum_probs=78.3
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
...|+|.|+|.||+.++.+.|.+.+.++.|++. .++-++|+-++|++.+ ..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~e---------------------~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDKE---------------------DDI 64 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccchh---------------------hHH
Confidence 467999999999999999999999999999987 4556778888887653 789
Q ss_pred HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
+.+|.|+.+||+-|+ .+|.+..+..+ +.+.+++|.+.|++.+.
T Consensus 65 a~ky~I~KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 65 ADKYHINKYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQLS 107 (375)
T ss_pred hhhhccccCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHhc
Confidence 999999999999999 99988876433 34556777777777654
No 240
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.4e-08 Score=82.69 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-----
Q 014225 205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----- 278 (428)
Q Consensus 205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~----- 278 (428)
..-+|+. |.+|+ .++++.++||++|+.--|+.|+.-...-..|+.|+++|++. +++|++..+++
T Consensus 13 siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~QE 82 (171)
T KOG1651|consen 13 SIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQE 82 (171)
T ss_pred ceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCcC
Confidence 4457888 99999 99999999999999999999999887778999999999988 89999999963
Q ss_pred --CHHHHHHHHhcCCccccccCC------cchhHHHHhcC----------cCccceEEEECCCCcEEecccc
Q 014225 279 --DQTSFESYFGTMPWLALPFGD------PTIKELTKYFD----------VQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 279 --~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~~~~----------v~~~P~~~lid~~G~i~~~~~~ 332 (428)
+.+++..++.......||+.. +....+-+.+. |+.-=+-||+|++|+++.|++.
T Consensus 83 p~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 83 PGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred CCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 345777787755545555522 11122222211 1111157999999999998754
No 241
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1e-07 Score=79.64 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=99.3
Q ss_pred hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
+|.++|+|++ +.+.+ .+++.++.||..+|..+ +-..|.|......+++.+.++. +..|+.||+| -
T Consensus 20 vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~D-L 86 (158)
T COG2077 20 VGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMD-L 86 (158)
T ss_pred cCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCC-C
Confidence 6999999999 99999 99999999987666666 5588999999999998887765 5789999999 6
Q ss_pred HHHHHHHHhcCCccccccCCc-chhHHHHhcCc--Ccc-------ceEEEECCCCcEEeccccch
Q 014225 280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDV--QGI-------PCLVIIGPEGKTVTKQGRNL 334 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v--~~~-------P~~~lid~~G~i~~~~~~~~ 334 (428)
+-++++|+...+.-++..++| .+..+.+.||+ ... .+++++|.+|+|++....+.
T Consensus 87 PFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 87 PFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred hhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence 678899999988777777777 45678899997 333 37899999999999865443
No 242
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.71 E-value=8.3e-08 Score=72.95 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcC
Q 014225 231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 310 (428)
Q Consensus 231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 310 (428)
|.||++|||+|..+.|.++++.+++... +.++ .+| +. +.+..|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~----------~~~~--~v~-~~-----------------------~~a~~~~ 46 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID----------AEFE--KVT-DM-----------------------NEILEAG 46 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC----------eEEE--EeC-CH-----------------------HHHHHcC
Confidence 7899999999999999999999987533 5554 444 21 2256699
Q ss_pred cCccceEEEECCCCcEEec
Q 014225 311 VQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 311 v~~~P~~~lid~~G~i~~~ 329 (428)
+.++|++++ ||+++..
T Consensus 47 v~~vPti~i---~G~~~~~ 62 (76)
T TIGR00412 47 VTATPGVAV---DGELVIM 62 (76)
T ss_pred CCcCCEEEE---CCEEEEE
Confidence 999999988 8888743
No 243
>PLN02309 5'-adenylylsulfate reductase
Probab=98.70 E-value=5.2e-08 Score=98.25 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh-hc
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 138 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 138 (428)
++++++|+|||+||++|+.+.|.+.+++++++..+ +.++.|++|.+. ..+++ .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~-----------------------~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ-----------------------KEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc-----------------------hHHHHhhC
Confidence 68899999999999999999999999999998765 888887776331 34554 69
Q ss_pred CCCCCceEEEEcC
Q 014225 139 DIEGIPCLVVLQP 151 (428)
Q Consensus 139 ~v~~~P~~~lid~ 151 (428)
+|.++||++++.+
T Consensus 419 ~I~~~PTil~f~~ 431 (457)
T PLN02309 419 QLGSFPTILLFPK 431 (457)
T ss_pred CCceeeEEEEEeC
Confidence 9999999999985
No 244
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.69 E-value=7.5e-08 Score=71.15 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=50.2
Q ss_pred EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225 229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 308 (428)
Q Consensus 229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 308 (428)
-+..|+++|||+|+...+.|+++.+.+ +++.+..++++.+ .++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence 367899999999999999999886643 2578888877754 568889
Q ss_pred cCcCccceEEEECCCCcEEec
Q 014225 309 FDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 309 ~~v~~~P~~~lid~~G~i~~~ 329 (428)
||+.++|++++ +|+++..
T Consensus 48 ~~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred cCCcccCEEEE---CCEEEEe
Confidence 99999999865 4566654
No 245
>PHA02125 thioredoxin-like protein
Probab=98.68 E-value=1e-07 Score=72.21 Aligned_cols=57 Identities=32% Similarity=0.584 Sum_probs=43.2
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.||++||++|+.+.|.|.++. +.++-|+.|.. .++++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~----------------~~~~~vd~~~~-----------------------~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE----------------YTYVDVDTDEG-----------------------VELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh----------------heEEeeeCCCC-----------------------HHHHHHc
Confidence 68999999999999999886431 34555555433 6789999
Q ss_pred CcCccceEEEECCCCcEEec
Q 014225 310 DVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~~~ 329 (428)
+|.++||++ +|+.+.+
T Consensus 43 ~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 43 HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred CCceeCeEE----CCEEEEE
Confidence 999999986 5666554
No 246
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.68 E-value=8.3e-08 Score=74.68 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=55.2
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++++|.||++||++|+...+.++++.+. .. ++.++.++.+.. ..+.+.|++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~--~~~~~~i~~~~~------------------------~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YP--KVKFVKVDVDEN------------------------PELAEEYGV 61 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CC--CceEEEEECCCC------------------------hhHHHhcCc
Confidence 38999999999999999999999999888 22 377887766543 677888999
Q ss_pred CCCceEEEEcCCCCCCCcc
Q 014225 141 EGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~ 159 (428)
.++|+++++. +|+++
T Consensus 62 ~~~P~~~~~~----~g~~~ 76 (93)
T cd02947 62 RSIPTFLFFK----NGKEV 76 (93)
T ss_pred ccccEEEEEE----CCEEE
Confidence 9999999998 56543
No 247
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.68 E-value=5e-08 Score=87.72 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=54.6
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
+++|+|+||++||++|+.+.|.|.+++.+|.. +.++-|+++ .....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad---------------------------~~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST---------------------------QCIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH---------------------------HhHhhCCC
Confidence 46999999999999999999999999999853 566665442 12467999
Q ss_pred CCCceEEEEcCCCCCCCccccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLHD 162 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~~ 162 (428)
.++||++++. +|+++...
T Consensus 151 ~~lPTlliyk----~G~~v~~i 168 (192)
T cd02988 151 KNLPTILVYR----NGDIVKQF 168 (192)
T ss_pred CCCCEEEEEE----CCEEEEEE
Confidence 9999999998 79887653
No 248
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.67 E-value=2.9e-07 Score=75.79 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=57.1
Q ss_pred ccCCcEEEEEEeccCChhHHhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225 223 SLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 299 (428)
Q Consensus 223 ~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~ 299 (428)
.-++|+++|+|+++||++|..+... | .++.+.+... +.++.++++...
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~----------~v~~~~d~~~~e------------------- 64 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN----------FIFWQCDIDSSE------------------- 64 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC----------EEEEEecCCCcc-------------------
Confidence 3458999999999999999998764 3 2344444433 444444443211
Q ss_pred cchhHHHHhcCcCccceEEEECC-CCcEEecccc
Q 014225 300 PTIKELTKYFDVQGIPCLVIIGP-EGKTVTKQGR 332 (428)
Q Consensus 300 d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~ 332 (428)
...+++.|++.++|++++||+ +|+++.+..|
T Consensus 65 --~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 65 --GQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred --HHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 367888999999999999999 8999987433
No 249
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.64 E-value=1.1e-07 Score=72.98 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=47.7
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCC
Q 014225 64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 143 (428)
Q Consensus 64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 143 (428)
.+..||++||++|+...|.|.++++.++.. +.++.|+.+.+ ..+++.|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN------------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC------------------------HHHHHHcCCccC
Confidence 467899999999999999999999998643 77777766543 456678999999
Q ss_pred ceEEE
Q 014225 144 PCLVV 148 (428)
Q Consensus 144 P~~~l 148 (428)
|++++
T Consensus 55 Pt~~~ 59 (82)
T TIGR00411 55 PAIVI 59 (82)
T ss_pred CEEEE
Confidence 99875
No 250
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.62 E-value=2.8e-07 Score=75.45 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+.+.+||.|+|+| |+|.+ .|++.+|+.+|... ...+.|.-|.++...+ ..+.+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~------------------~~~~~ 69 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGE------------------KLNME 69 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhh-------cCceEEEEEecccccc------------------hhhHH
Confidence 3478999999944 34444 36666666666443 2235666666643100 01378
Q ss_pred HHHhcCcC--ccceEEEECCCCc
Q 014225 305 LTKYFDVQ--GIPCLVIIGPEGK 325 (428)
Q Consensus 305 ~~~~~~v~--~~P~~~lid~~G~ 325 (428)
|++.|+|+ ++||+.++ ++|.
T Consensus 70 L~~~y~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 70 LGERYKLDKESYPVIYLF-HGGD 91 (116)
T ss_pred HHHHhCCCcCCCCEEEEE-eCCC
Confidence 99999999 99999999 5563
No 251
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.61 E-value=9.7e-08 Score=100.07 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=58.8
Q ss_pred ccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225 57 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 133 (428)
Q Consensus 57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 133 (428)
...+||+|+|+|||+||++|+.+.+.+ .++.++++ + +.++.++++++.+ ...+
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~--~~~v~vDvt~~~~--------------------~~~~ 525 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--D--TVLLQADVTANNA--------------------EDVA 525 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--C--CEEEEEECCCCCh--------------------hhHH
Confidence 345689999999999999999987764 55666663 2 6677776654421 1168
Q ss_pred HHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225 134 LNRKFDIEGIPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 134 l~~~~~v~~~P~~~lid~~~~dG~i~ 159 (428)
+.+.|++.++|+++++++ +|+++
T Consensus 526 l~~~~~v~g~Pt~~~~~~---~G~~i 548 (571)
T PRK00293 526 LLKHYNVLGLPTILFFDA---QGQEI 548 (571)
T ss_pred HHHHcCCCCCCEEEEECC---CCCCc
Confidence 899999999999999999 99774
No 252
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.61 E-value=1.4e-07 Score=73.94 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=59.1
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
+.++++.+.+..|+++||++|....+.+.++...+. ++.+..+.++..
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~~--------------------- 54 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGALF--------------------- 54 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHhC---------------------
Confidence 346778888999999999999999999988887643 478888887744
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEEec
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
.++++.|||.++|++++ ||+++..
T Consensus 55 --~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 --QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred --HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 67899999999999975 6888876
No 253
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.9e-07 Score=77.78 Aligned_cols=138 Identities=14% Similarity=0.263 Sum_probs=104.0
Q ss_pred hccCCCCcccCCCCCceecccccCCcEEEEEEe--ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225 202 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 278 (428)
Q Consensus 202 ~g~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~- 278 (428)
+|+.+|+|..++.-. .+.+.++.|.-+.|.|. +...|.|..++..+.+++-+|..+ +++.+++|+|.
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV 77 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence 699999999955555 69999999977777777 457999999999999999999877 89999999995
Q ss_pred -CHHHHHHHH----hcCC-ccccccCCcchhHHHHhcCc------------CccceEEEECCCCcEEeccccchhhcccc
Q 014225 279 -DQTSFESYF----GTMP-WLALPFGDPTIKELTKYFDV------------QGIPCLVIIGPEGKTVTKQGRNLINLYQE 340 (428)
Q Consensus 279 -~~~~~~~~~----~~~~-~~~~~~~~d~~~~~~~~~~v------------~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 340 (428)
+...|.+-+ ...+ -+.+|+..|...+++-.|+. .....+++||++.++.-...
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l--------- 148 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL--------- 148 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE---------
Confidence 344444444 3222 37889999999999888865 12457899999999987642
Q ss_pred cCCCC-ChHHHHHHHHHHHHH
Q 014225 341 NAYPF-TEAKLEFLEKQMEEE 360 (428)
Q Consensus 341 ~~~p~-~~~~~~~L~~~l~~~ 360 (428)
||. +.+..+|+...|..+
T Consensus 149 --YP~ttGRN~dEiLRvidsL 167 (224)
T KOG0854|consen 149 --YPSTTGRNFDEILRVIDSL 167 (224)
T ss_pred --cccccCcCHHHHHHHHHHH
Confidence 232 234456777766654
No 254
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.54 E-value=3.6e-07 Score=83.73 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=66.1
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
+..+.++.-|++|+.+.|++|+.+.|.|..+.++| ++.|+.||+|.... ..||....
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~~-----------~~fp~~~~ 171 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRPI-----------PSFPNPRP 171 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCCC-----------cCCCCCCC
Confidence 33445667799999999999999999999999988 58999999996421 23333222
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEEec
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
+..+++.+||..+|++||+++++.....
T Consensus 172 -~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 172 -DPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred -CHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 5778889999999999999999844443
No 255
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.53 E-value=2.7e-07 Score=74.22 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=55.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
|+++++.|+++||++|....|.+.+++++++++ +.++.|+.|.. ..+++.|++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~------------------------~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF------------------------GRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh------------------------HHHHHHcCC
Confidence 789999999999999999999999999999864 77777654432 678889999
Q ss_pred C--CCceEEEEcC
Q 014225 141 E--GIPCLVVLQP 151 (428)
Q Consensus 141 ~--~~P~~~lid~ 151 (428)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999995
No 256
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.52 E-value=6.6e-07 Score=81.34 Aligned_cols=117 Identities=20% Similarity=0.332 Sum_probs=90.7
Q ss_pred cCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcC-CCcEEEEEEecCC---ChHHHHHHHh
Q 014225 43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DLNAFNNYRA 116 (428)
Q Consensus 43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~ii~vs~D~---~~~~~~~~~~ 116 (428)
-.| |.+.+|+.++-.++.||.++++|-.+.|| .|..++..|.++.+++... +..+.-|+|++|. +.+.+++|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 358 99999999999999999999999999999 8999999999999998765 3344578999986 6677888888
Q ss_pred cCC--CceeccCChHHHHHHHhhcCCCC---------------CceEEEEcCCCCCCCcccccc
Q 014225 117 CMP--WLAVPYSDLETKKALNRKFDIEG---------------IPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 117 ~~~--~~~~~~~d~~~~~~l~~~~~v~~---------------~P~~~lid~~~~dG~i~~~~~ 163 (428)
++. .+-+.. ..+.-..+++.|.|-. .=.++|||| +|+.+...+
T Consensus 200 eF~pkllGLTG-T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP---eg~Fvd~~G 259 (280)
T KOG2792|consen 200 EFHPKLLGLTG-TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP---EGEFVDYYG 259 (280)
T ss_pred hcChhhhcccC-CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC---Ccceehhhc
Confidence 753 222332 3333378889988732 225789999 997775543
No 257
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=4.3e-07 Score=91.21 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCCCEEecccCCC-CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCC
Q 014225 49 QHGTQVKVSDLEG-KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 127 (428)
Q Consensus 49 ~~G~~v~l~~~~g-k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d 127 (428)
+++.+++-.-+.. +..+|.||++||++|+++.|.++++++.+.+...=+.|.+| |...+
T Consensus 44 Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaV--dCA~~------------------ 103 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAV--DCADE------------------ 103 (606)
T ss_pred eehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEe--eccch------------------
Confidence 3444433333322 47899999999999999999999999999886422344444 33321
Q ss_pred hHHHHHHHhhcCCCCCceEEEEcC
Q 014225 128 LETKKALNRKFDIEGIPCLVVLQP 151 (428)
Q Consensus 128 ~~~~~~l~~~~~v~~~P~~~lid~ 151 (428)
.+..+++.|+|+++|++..+.+
T Consensus 104 --~N~~lCRef~V~~~Ptlryf~~ 125 (606)
T KOG1731|consen 104 --ENVKLCREFSVSGYPTLRYFPP 125 (606)
T ss_pred --hhhhhHhhcCCCCCceeeecCC
Confidence 1289999999999999999998
No 258
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.48 E-value=3.6e-08 Score=60.44 Aligned_cols=28 Identities=36% Similarity=1.124 Sum_probs=14.3
Q ss_pred ccccccCCCCc-eeEeccCCCCCCccccc
Q 014225 390 ICCDCDEQGSG-WAYQCLECGYEVHPKCV 417 (428)
Q Consensus 390 ~c~~C~~~g~~-~~~~~~~~~~~~~~~~~ 417 (428)
.|+.|++.+.+ |.|+|..|+|+||..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 69999999998 99999999999999996
No 259
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.48 E-value=8.7e-07 Score=82.68 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=78.0
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
+..+.++.-+++||.+.|++|.++.|.++.+.++| ++.|+.||+|... ...||....
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~-----------~p~fp~~~~ 201 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTL-----------IPGLPNSRS 201 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCC-----------CCCCCCccC
Confidence 34455667899999999999999999999999988 5899999999652 123443322
Q ss_pred chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 364 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~ 364 (428)
+...++.+||..+|++||++++.+....-+ +|.. ..++|.+.|..++...
T Consensus 202 -d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~------~G~i-------S~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 202 -DSGQAQHLGVKYFPALYLVNPKSQKMSPLA------YGFI-------SQDELKERILNVLTQF 251 (256)
T ss_pred -ChHHHHhcCCccCceEEEEECCCCcEEEEe------eccC-------CHHHHHHHHHHHHhcc
Confidence 466788999999999999999965444322 2211 1467777777766544
No 260
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.48 E-value=1.1e-07 Score=87.69 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=57.2
Q ss_pred cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225 227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 306 (428)
Q Consensus 227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 306 (428)
-.++|.||||||.+|+++.|.|.++--++++- +.-|-.-.+|... -..++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~---------------------f~aiA 93 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR---------------------FPAIA 93 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---------------------chhhH
Confidence 57999999999999999999999998888765 3333333445442 26789
Q ss_pred HhcCcCccceEEEECCCCcEEecccc
Q 014225 307 KYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 307 ~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
..|||+++||+.++ ++|-.+...|+
T Consensus 94 nefgiqGYPTIk~~-kgd~a~dYRG~ 118 (468)
T KOG4277|consen 94 NEFGIQGYPTIKFF-KGDHAIDYRGG 118 (468)
T ss_pred hhhccCCCceEEEe-cCCeeeecCCC
Confidence 99999999999999 66655554443
No 261
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.44 E-value=6.1e-06 Score=86.76 Aligned_cols=181 Identities=13% Similarity=0.136 Sum_probs=106.2
Q ss_pred ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225 57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 136 (428)
Q Consensus 57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 136 (428)
..+++.+.++.|+.+.|..|......|+++.+ +.+ ++.+.....+. ...+++
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~------------------------~~~~~~ 413 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGE------------------------EPESET 413 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEecccc------------------------chhhHh
Confidence 46778888999999889899886666666553 223 25554432211 167888
Q ss_pred hcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCCC
Q 014225 137 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD 216 (428)
Q Consensus 137 ~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~ 216 (428)
.|++...|++.+++. +|+-.. ++ ....|.-.+....+.+.... +...+.+. ..
T Consensus 414 ~~~v~~~P~~~i~~~---~~~~~~---i~------f~g~P~G~Ef~s~i~~i~~~-----------~~~~~~l~----~~ 466 (555)
T TIGR03143 414 LPKITKLPTVALLDD---DGNYTG---LK------FHGVPSGHELNSFILALYNA-----------AGPGQPLG----EE 466 (555)
T ss_pred hcCCCcCCEEEEEeC---CCcccc---eE------EEecCccHhHHHHHHHHHHh-----------cCCCCCCC----HH
Confidence 999999999999976 553211 00 11122222222222222111 11111110 00
Q ss_pred ceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccc
Q 014225 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 296 (428)
Q Consensus 217 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~ 296 (428)
..=.+..+.++..+-.|.+++||+|......++++.... +++..-.|.....
T Consensus 467 ~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~~----------------- 518 (555)
T TIGR03143 467 LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSHF----------------- 518 (555)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECccc-----------------
Confidence 011233445556677778999999998777776666553 2466555555433
Q ss_pred cCCcchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225 297 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 297 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
.++++.|+|.++|++++ ||+++..
T Consensus 519 ------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 68899999999999975 4666654
No 262
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.44 E-value=6.7e-07 Score=66.00 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=44.1
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCC
Q 014225 64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 143 (428)
Q Consensus 64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 143 (428)
-++.|+++||++|+...+.|+++.+... ++.+..+++|.+ ..+++.|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~------------------------~~l~~~~~i~~v 53 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEF------------------------PDLADEYGVMSV 53 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccC------------------------HhHHHHcCCccc
Confidence 3678999999999999999998866532 277776655433 567788999999
Q ss_pred ceEEE
Q 014225 144 PCLVV 148 (428)
Q Consensus 144 P~~~l 148 (428)
|++++
T Consensus 54 Pti~i 58 (67)
T cd02973 54 PAIVI 58 (67)
T ss_pred CEEEE
Confidence 99754
No 263
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.40 E-value=1.6e-06 Score=80.50 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=75.0
Q ss_pred cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
+++.++.-|++||.+.||+|.++.|.|+.+.++| ++.|+.||+|.... ..||....
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~~-----------p~fp~~~~- 194 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVIN-----------PLLPDSRT- 194 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCCcc-
Confidence 3344556789999999999999999999999988 58999999996421 23443322
Q ss_pred hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225 302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 364 (428)
Q Consensus 302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~ 364 (428)
+...+..+||..+|++||++++.+-...- .+|.. ..++|.+.|..++.+.
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv------~~G~i-------S~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSVRPL------SYGFI-------TQDDLAKRFLNVSTDF 244 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcEEEE------eeccC-------CHHHHHHHHHHHHhcc
Confidence 34556899999999999999997443332 22221 1467777777666543
No 264
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.8e-06 Score=72.66 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=82.1
Q ss_pred ccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHH
Q 014225 42 DRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNN 113 (428)
Q Consensus 42 ~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~~~~ 113 (428)
.-|| +.+.+|++++|++++||++||.-.||-|+.-. .-..|+.+|++|+++| ++|++...+ .+.+++++
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHH
Confidence 4467 89999999999999999999999999999777 4567999999999999 999999865 34566777
Q ss_pred HHh-cCCCceeccC-------ChH-HHHHHHhhcC-------CCCCceEEEEcCCCCCCCcccccc
Q 014225 114 YRA-CMPWLAVPYS-------DLE-TKKALNRKFD-------IEGIPCLVVLQPYDDKDDATLHDG 163 (428)
Q Consensus 114 ~~~-~~~~~~~~~~-------d~~-~~~~l~~~~~-------v~~~P~~~lid~~~~dG~i~~~~~ 163 (428)
|-. +++..+.-|. +.. .-+.|..... |..=-+-+|||+ +|+|+.+..
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr---~G~VV~Rf~ 144 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDR---DGNVVKRFS 144 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcC---CCcEEEeeC
Confidence 765 3443211111 111 1123333221 222346789999 999997743
No 265
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.35 E-value=2.8e-06 Score=70.87 Aligned_cols=72 Identities=8% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHHHH---HHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
-++|+|+|+|++.||++|+.+...+-. +.+.+.++ +.+|-+..|.... .. .
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~-----------------~~---~--- 74 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK-----------------NL---S--- 74 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC-----------------Cc---C---
Confidence 368999999999999999998765422 33333232 6555554443321 00 0
Q ss_pred hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 136 RKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
..+ .++|+++|+|+ +|+++.+
T Consensus 75 -~~g-~~vPtivFld~---~g~vi~~ 95 (130)
T cd02960 75 -PDG-QYVPRIMFVDP---SLTVRAD 95 (130)
T ss_pred -ccC-cccCeEEEECC---CCCCccc
Confidence 022 47999999999 9988765
No 266
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.35 E-value=1.3e-06 Score=67.28 Aligned_cols=46 Identities=30% Similarity=0.638 Sum_probs=33.7
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 279 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~ 279 (428)
-.||+++|+|+++||++|+.+...+ .++.+.+.. ++..+.|..+..
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~~ 63 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDDE 63 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTTH
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCCC
Confidence 3589999999999999999988776 334443543 467777776543
No 267
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.34 E-value=1.6e-06 Score=65.86 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=41.6
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCce
Q 014225 66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 145 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 145 (428)
|.||++||++|+...|.++++.+++... ++++-| | + ...+..|++.++|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v--~-~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKV--T-D------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEe--C-C------------------------HHHHHHcCCCcCCE
Confidence 7899999999999999999999997543 566544 3 1 12245699999999
Q ss_pred EEE
Q 014225 146 LVV 148 (428)
Q Consensus 146 ~~l 148 (428)
+++
T Consensus 53 i~i 55 (76)
T TIGR00412 53 VAV 55 (76)
T ss_pred EEE
Confidence 888
No 268
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.33 E-value=2.9e-06 Score=68.57 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=55.3
Q ss_pred Cccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225 208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278 (428)
Q Consensus 208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~ 278 (428)
+|++ +.+|+ .++++.++||++||.-.|+.|+.-. ....|++|+++|+++ +++|+++.+++
T Consensus 3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBST
T ss_pred ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehHH
Confidence 5777 99999 9999999999999999999999888 888999999999987 89999999864
No 269
>PHA02125 thioredoxin-like protein
Probab=98.33 E-value=1.4e-06 Score=66.06 Aligned_cols=50 Identities=30% Similarity=0.500 Sum_probs=37.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.||++||++|+...|.|+++. +.++- +|.+.. .++++.|++.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~--vd~~~~----------------------~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVD--VDTDEG----------------------VELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEe--eeCCCC----------------------HHHHHHcCCceeC
Confidence 68999999999999999886531 33333 333222 7889999999999
Q ss_pred eEE
Q 014225 145 CLV 147 (428)
Q Consensus 145 ~~~ 147 (428)
+++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 976
No 270
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.29 E-value=2e-06 Score=66.28 Aligned_cols=44 Identities=39% Similarity=0.681 Sum_probs=31.3
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecC
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD 105 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D 105 (428)
-+||+++|+|+++||++|+.+...+ .++.+.+.++ +..+.|..+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 3589999999999999999987666 2344434443 666655543
No 271
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.29 E-value=1.6e-06 Score=80.48 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
..+|+|+|||.||+.++...|.+.+.+.+++..-++-.++.-++|.+.+ ..|+.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence 4689999999999999999999999999998876556677777887766 789999999
Q ss_pred CCCceEEEEcCCCCCCCcccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~ 161 (428)
..+||+-++. +|....+
T Consensus 71 ~KyPTlKvfr----nG~~~~r 87 (375)
T KOG0912|consen 71 NKYPTLKVFR----NGEMMKR 87 (375)
T ss_pred ccCceeeeee----ccchhhh
Confidence 9999999999 7877654
No 272
>smart00594 UAS UAS domain.
Probab=98.28 E-value=6.8e-06 Score=68.47 Aligned_cols=70 Identities=14% Similarity=0.318 Sum_probs=51.4
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
-.+|.++|+|+++||++|..+.... .++.+.+.. ++.++.++++...
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e-------------------- 74 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE-------------------- 74 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh--------------------
Confidence 3578999999999999999977653 234444432 3555555544322
Q ss_pred chhHHHHhcCcCccceEEEECCCC
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEG 324 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G 324 (428)
...++..|++.++|+++++|++|
T Consensus 75 -g~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 -GQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred -HHHHHHhcCcCCCCEEEEEecCC
Confidence 36789999999999999999998
No 273
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.4e-06 Score=72.28 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=87.8
Q ss_pred cccccCc----cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHH
Q 014225 39 ASKDRDY----LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAF 111 (428)
Q Consensus 39 g~~~pdf----l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~~~ 111 (428)
...+|+| +.+..-+.++|++++||.|++.|| ..+---|..++-.+...+.+|++.+ -++|++|+|... -+|
T Consensus 7 ~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlAW 84 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLAW 84 (196)
T ss_pred CCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhhH
Confidence 3455777 344445589999999999999999 5555589999999999999999987 999999999753 445
Q ss_pred HHHHhcCC---CceeccCChHHHHHHHhhcCC----C--CCceEEEEcCCCCCCCcccc
Q 014225 112 NNYRACMP---WLAVPYSDLETKKALNRKFDI----E--GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 112 ~~~~~~~~---~~~~~~~d~~~~~~l~~~~~v----~--~~P~~~lid~~~~dG~i~~~ 161 (428)
...-++.+ -+.+|. -.+.+.++++.||+ . .+-.++|||+ +|.+...
T Consensus 85 ~ntprk~gGlg~~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfIId~---~gi~R~i 139 (196)
T KOG0852|consen 85 INTPRKQGGLGPLNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFIIDP---DGILRQI 139 (196)
T ss_pred hcCchhhCCcCccccce-eeccchhhHHhcCceecCCCcceeeeEEEcc---ccceEEe
Confidence 55555432 234554 33344899999998 3 3457999999 9977654
No 274
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.24 E-value=6.4e-07 Score=54.78 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=27.1
Q ss_pred cccccccCCCCce-eEeccCCCCCCccccc
Q 014225 389 FICCDCDEQGSGW-AYQCLECGYEVHPKCV 417 (428)
Q Consensus 389 ~~c~~C~~~g~~~-~~~~~~~~~~~~~~~~ 417 (428)
++|+.|.+...+- .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5899999998887 9999999999999997
No 275
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.24 E-value=5.6e-06 Score=66.89 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=55.4
Q ss_pred Cc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC
Q 014225 44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 106 (428)
Q Consensus 44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~ 106 (428)
|| +.+.+|++++|+.++||++||.-.|+-|+.-. ....|++++++|+++| ++|++...+.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 56 78999999999999999999999999999888 8889999999999998 9999998654
No 276
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.23 E-value=3.6e-06 Score=65.92 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+.++++.+-+..|+++||++|....+.+.++.+.+. ++.+..+++|.. ..++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~------------------------~e~a 58 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALF------------------------QDEV 58 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhC------------------------HHHH
Confidence 346788899999999999999999999998887753 266666654433 6788
Q ss_pred hhcCCCCCceEEE
Q 014225 136 RKFDIEGIPCLVV 148 (428)
Q Consensus 136 ~~~~v~~~P~~~l 148 (428)
+.|++.++|++++
T Consensus 59 ~~~~V~~vPt~vi 71 (89)
T cd03026 59 EERGIMSVPAIFL 71 (89)
T ss_pred HHcCCccCCEEEE
Confidence 8999999999964
No 277
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.23 E-value=1.1e-06 Score=81.32 Aligned_cols=66 Identities=23% Similarity=0.418 Sum_probs=54.2
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225 62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 141 (428)
Q Consensus 62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 141 (428)
..++|+|||+||++|++..|.+.++-.++++.|..+.+-- +|.+. | ..++..|+++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGK--lDaT~----------------f------~aiAnefgiq 99 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGK--LDATR----------------F------PAIANEFGIQ 99 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecc--ccccc----------------c------hhhHhhhccC
Confidence 5999999999999999999999999999998874433332 33321 2 7899999999
Q ss_pred CCceEEEEcC
Q 014225 142 GIPCLVVLQP 151 (428)
Q Consensus 142 ~~P~~~lid~ 151 (428)
++||+.++..
T Consensus 100 GYPTIk~~kg 109 (468)
T KOG4277|consen 100 GYPTIKFFKG 109 (468)
T ss_pred CCceEEEecC
Confidence 9999999995
No 278
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.20 E-value=3.9e-06 Score=76.91 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+..+.++.-|++|+.+.|+.|..+.|.|+.+.+++ | +.|+.||+|...- ..+|-... +..++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g--~~v~~vs~DG~~~-----------~~fp~~~~--~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---G--FSVIPVSLDGRPI-----------PSFPNPRP--DPGQA 176 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---C--CEEEEEecCCCCC-----------cCCCCCCC--CHHHH
Confidence 44667889999999999999999999999999998 4 8999999997632 12222222 27788
Q ss_pred hhcCCCCCceEEEEcCCCCCC
Q 014225 136 RKFDIEGIPCLVVLQPYDDKD 156 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG 156 (428)
+.+++..+|+++|+++ ++
T Consensus 177 ~~l~v~~~Pal~Lv~~---~~ 194 (215)
T PF13728_consen 177 KRLGVKVTPALFLVNP---NT 194 (215)
T ss_pred HHcCCCcCCEEEEEEC---CC
Confidence 9999999999999999 66
No 279
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.19 E-value=2.8e-06 Score=71.34 Aligned_cols=78 Identities=22% Similarity=0.445 Sum_probs=47.0
Q ss_pred ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
....+..++.|..+|||.|....|.|.++++.-. ++++-.+..|.+.+...+|+
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~el~~~~l--------------- 91 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENKELMDQYL--------------- 91 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHHHHTTTTT---------------
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCChhHHHHHH---------------
Confidence 3445667888999999999999999999998642 46777777665432211111
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
..|...+|+++++|.+|+.+.+.+
T Consensus 92 -----t~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 92 -----TNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp -----T-SS--SSEEEEE-TT--EEEEEE
T ss_pred -----hCCCeecCEEEEEcCCCCEeEEEc
Confidence 147889999999999999988643
No 280
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.15 E-value=4.1e-06 Score=68.57 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCCEEEEEEec--CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225 60 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 137 (428)
Q Consensus 60 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 137 (428)
+.+.+||.|+| +||+ + .|+.++++.++.....++.+.-|.+|... +. ....|+++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------------------~~-~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYG------------------EK-LNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEeccccc------------------ch-hhHHHHHH
Confidence 56899999999 6666 3 35566666666443223555555443211 11 12789999
Q ss_pred cCCC--CCceEEEEcC
Q 014225 138 FDIE--GIPCLVVLQP 151 (428)
Q Consensus 138 ~~v~--~~P~~~lid~ 151 (428)
|+|. ++||+.++..
T Consensus 74 y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 74 YKLDKESYPVIYLFHG 89 (116)
T ss_pred hCCCcCCCCEEEEEeC
Confidence 9999 9999999994
No 281
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.5e-05 Score=65.61 Aligned_cols=125 Identities=20% Similarity=0.263 Sum_probs=94.2
Q ss_pred cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225 37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 114 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~ 114 (428)
.+|+++||| |.+.+.+.+++.++.||..+|..+ +-.-+-|......+++.+.++.+ ..++.||.|--. +.++|
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLPF-Aq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLPF-AQKRF 93 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCChh-HHhhh
Confidence 479999999 999999999999999997666655 66778999999999998888754 779999887543 36667
Q ss_pred HhcCCCcee-ccCChHHHHHHHhhcCC--CCCc-------eEEEEcCCCCCCCcccccchhhhhhc
Q 014225 115 RACMPWLAV-PYSDLETKKALNRKFDI--EGIP-------CLVVLQPYDDKDDATLHDGVELIYKY 170 (428)
Q Consensus 115 ~~~~~~~~~-~~~d~~~~~~l~~~~~v--~~~P-------~~~lid~~~~dG~i~~~~~~~~i~~~ 170 (428)
-...+...+ +.+|- ....+.+.||+ ...| +.+++|. +|++.+..+...|.+.
T Consensus 94 C~aeGi~nv~~lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De---~g~V~y~elv~eit~e 155 (158)
T COG2077 94 CGAEGIENVITLSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDE---NGKVTYSELVPEITEE 155 (158)
T ss_pred hhhcCcccceEhhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcC---CCcEEEEEccchhhcC
Confidence 766665422 23221 22678888986 3444 6788998 9999999887766543
No 282
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.12 E-value=1.5e-05 Score=65.44 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=52.8
Q ss_pred cCCCCEEEEEEecCCChhhhhhHHH-H--HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225 58 DLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 134 (428)
Q Consensus 58 ~~~gk~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 134 (428)
.-++|+++|+|+++||++|..+... | .++.+.++++ +..+.++++..+ . ..+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e---------------------~-~~~ 68 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE---------------------G-QRF 68 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc---------------------H-HHH
Confidence 3468999999999999999997643 2 2244444433 555544443221 1 678
Q ss_pred HhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 135 NRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 135 ~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
...|++.++|++++|++ .+|+++.+
T Consensus 69 ~~~~~~~~~P~~~~i~~--~~g~~l~~ 93 (114)
T cd02958 69 LQSYKVDKYPHIAIIDP--RTGEVLKV 93 (114)
T ss_pred HHHhCccCCCeEEEEeC--ccCcEeEE
Confidence 88999999999999997 24766543
No 283
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.12 E-value=3e-05 Score=70.77 Aligned_cols=136 Identities=17% Similarity=0.232 Sum_probs=92.3
Q ss_pred hhccCCCCccc-CCCCCce-ecccccC--CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE-
Q 014225 201 LLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS- 275 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~g~~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is- 275 (428)
.+|.++||..+ +.+|+ . .++-++. ++|+||+|.+-.||+-..-++.++++.++|.+.. ++-+|.|.
T Consensus 74 ~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a--------dFl~VYI~E 144 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA--------DFLIVYIEE 144 (237)
T ss_pred eCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh--------heehhhHhh
Confidence 46999999999 99999 6 8999984 5999999999889999999999999999998751 34444431
Q ss_pred ---cC--------------CCHH---HHHHHHhcCCccccccCCc-chhHHHHhcCcCccceEEEECCCCcEEeccccch
Q 014225 276 ---TD--------------RDQT---SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 334 (428)
Q Consensus 276 ---~d--------------~~~~---~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 334 (428)
.| .+.+ ...+.+.+.. ..+|+..| .++...+.||..-- .+||| .+|+|++++|..
T Consensus 145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg~G- 220 (237)
T PF00837_consen 145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGGPG- 220 (237)
T ss_pred hCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCCCC-
Confidence 11 0111 1222222222 45676555 56677888875433 36677 799999997642
Q ss_pred hhcccccCCCCChHHHHHHHHHHHH
Q 014225 335 INLYQENAYPFTEAKLEFLEKQMEE 359 (428)
Q Consensus 335 ~~~~g~~~~p~~~~~~~~L~~~l~~ 359 (428)
+|.+.. +++++.|++
T Consensus 221 -------P~~y~~---~e~r~~L~~ 235 (237)
T PF00837_consen 221 -------PFGYSP---EELREWLEK 235 (237)
T ss_pred -------CCcCCH---HHHHHHHHh
Confidence 333443 555665554
No 284
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.11 E-value=1.2e-05 Score=64.90 Aligned_cols=71 Identities=34% Similarity=0.622 Sum_probs=53.8
Q ss_pred EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-CChHHHHHHHhcCCCceeccCChHHH
Q 014225 53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRACMPWLAVPYSDLETK 131 (428)
Q Consensus 53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-~~~~~~~~~~~~~~~~~~~~~d~~~~ 131 (428)
.......+++++++.||++||++|+..+|.+.++.+++... +.++.++.. ..
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~------------------------ 76 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDEN------------------------ 76 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCC------------------------
Confidence 34444455899999999999999999999999999999762 677777664 12
Q ss_pred HHHHhhcC--CCCCceEEEEc
Q 014225 132 KALNRKFD--IEGIPCLVVLQ 150 (428)
Q Consensus 132 ~~l~~~~~--v~~~P~~~lid 150 (428)
..+...|+ +..+|++++..
T Consensus 77 ~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 77 PDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred hHHHHHHhhhhccCCeEEEEe
Confidence 44555555 67778877555
No 285
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.11 E-value=1.6e-05 Score=56.50 Aligned_cols=63 Identities=29% Similarity=0.575 Sum_probs=48.3
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.||++||++|.+..+.+.++ .+.. .++.++.++++..... ......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~--------------------~~~~~~~ 49 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---------KGVKFEAVDVDEDPAL--------------------EKELKRY 49 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---------CCcEEEEEEcCCChHH--------------------hhHHHhC
Confidence 4789999999999999999988 3332 3789999998865321 1113578
Q ss_pred CcCccceEEEECCC
Q 014225 310 DVQGIPCLVIIGPE 323 (428)
Q Consensus 310 ~v~~~P~~~lid~~ 323 (428)
++..+|++++++++
T Consensus 50 ~~~~~P~~~~~~~~ 63 (69)
T cd01659 50 GVGGVPTLVVFGPG 63 (69)
T ss_pred CCccccEEEEEeCC
Confidence 89999999999766
No 286
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.09 E-value=1.1e-05 Score=64.98 Aligned_cols=72 Identities=38% Similarity=0.625 Sum_probs=54.4
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
...+.++++++.||++||++|+.+.|.+.++.+++.. .+.++.++....
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~~--------------------- 75 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDDE--------------------- 75 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCCC---------------------
Confidence 3334488999999999999999999999999998864 267888887511
Q ss_pred chhHHHHhcC--cCccceEEEECCCCc
Q 014225 301 TIKELTKYFD--VQGIPCLVIIGPEGK 325 (428)
Q Consensus 301 ~~~~~~~~~~--v~~~P~~~lid~~G~ 325 (428)
...+...|+ +..+|+++++ .+|.
T Consensus 76 -~~~~~~~~~~~~~~~p~~~~~-~~~~ 100 (127)
T COG0526 76 -NPDLAAEFGVAVRSIPTLLLF-KDGK 100 (127)
T ss_pred -ChHHHHHHhhhhccCCeEEEE-eCcc
Confidence 256666777 8888988755 4443
No 287
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.07 E-value=9e-06 Score=75.92 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=63.8
Q ss_pred cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+..+.++.-+++||.+.|++|..+.|.|+.+.++| | +.++.||+|...- ..+|-...+ ..++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---g--i~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 206 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---G--ISVIPISVDGTLI-----------PGLPNSRSD--SGQA 206 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCccCC--hHHH
Confidence 34566789999999999999999999999999997 4 8899999997632 123322222 6788
Q ss_pred hhcCCCCCceEEEEcC
Q 014225 136 RKFDIEGIPCLVVLQP 151 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~ 151 (428)
+.+|+..+|+++|+++
T Consensus 207 ~~l~v~~~Pal~Lv~~ 222 (256)
T TIGR02739 207 QHLGVKYFPALYLVNP 222 (256)
T ss_pred HhcCCccCceEEEEEC
Confidence 9999999999999999
No 288
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=5.1e-06 Score=83.66 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=57.9
Q ss_pred cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225 227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 306 (428)
Q Consensus 227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 306 (428)
+..+|.||++||++|+++.|.++++++..... .+=+.|.+|++-.+. +..++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence 46789999999999999999999999998776 344666677665432 58899
Q ss_pred HhcCcCccceEEEECCC
Q 014225 307 KYFDVQGIPCLVIIGPE 323 (428)
Q Consensus 307 ~~~~v~~~P~~~lid~~ 323 (428)
+.|+|.++|++..+.++
T Consensus 110 Ref~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPD 126 (606)
T ss_pred hhcCCCCCceeeecCCc
Confidence 99999999999999777
No 289
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.03 E-value=4.1e-05 Score=66.28 Aligned_cols=81 Identities=19% Similarity=0.362 Sum_probs=45.2
Q ss_pred cCCcEEEEEEeccCChhHHhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH-HHHHHHHhcCCccccccCC
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWLALPFGD 299 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~-~~~~~~~~~~~~~~~~~~~ 299 (428)
-.+|+++|.++++||.+|..+... + .++++.+... +|.|.+|.+. .++...+.
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~----------- 91 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYM----------- 91 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHH-----------
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHH-----------
Confidence 357999999999999999987752 2 2455555554 6666776543 22222221
Q ss_pred cchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 300 PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 300 d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
.......|..+.|++++++++|+.++..
T Consensus 92 ---~~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 92 ---NAVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ---HHHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred ---HHHHHhcCCCCCCceEEECCCCCeeeee
Confidence 1111223788999999999999998864
No 290
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.00 E-value=1.3e-05 Score=74.53 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=62.8
Q ss_pred cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+..+.++.-|++||.+.|++|..+.|.|+.+.+++ | +.++.||+|.... ..+|....+ ...+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g--~~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---G--LSVIPVSVDGVIN-----------PLLPDSRTD--QGQA 199 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCCccC--hhHH
Confidence 34566778999999999999999999999999997 4 8899999997532 123322222 5566
Q ss_pred hhcCCCCCceEEEEcC
Q 014225 136 RKFDIEGIPCLVVLQP 151 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~ 151 (428)
+.+++..+|+++|+++
T Consensus 200 ~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 200 QRLGVKYFPALMLVDP 215 (248)
T ss_pred HhcCCcccceEEEEEC
Confidence 8999999999999998
No 291
>smart00594 UAS UAS domain.
Probab=97.91 E-value=4.4e-05 Score=63.57 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=49.6
Q ss_pred cCCCCEEEEEEecCCChhhhhhHHHH-H--HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225 58 DLEGKVTALYFSANWYPPCGNFTGVL-V--DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 134 (428)
Q Consensus 58 ~~~gk~vlv~F~a~wC~~C~~~~p~l-~--~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 134 (428)
.-++|.++|+|+++||++|..+.-.+ . ++.+.+.+ . +.++.++++..+ . ..+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~--fv~~~~dv~~~e---------------------g-~~l 78 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-N--FIFWQVDVDTSE---------------------G-QRV 78 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-C--EEEEEecCCChh---------------------H-HHH
Confidence 34689999999999999999976432 1 13333333 2 444444333222 2 688
Q ss_pred HhhcCCCCCceEEEEcCCCCCC
Q 014225 135 NRKFDIEGIPCLVVLQPYDDKD 156 (428)
Q Consensus 135 ~~~~~v~~~P~~~lid~~~~dG 156 (428)
+..|++.++|+++++++ +|
T Consensus 79 ~~~~~~~~~P~~~~l~~---~~ 97 (122)
T smart00594 79 SQFYKLDSFPYVAIVDP---RT 97 (122)
T ss_pred HHhcCcCCCCEEEEEec---CC
Confidence 99999999999999999 76
No 292
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.89 E-value=6e-05 Score=53.42 Aligned_cols=62 Identities=32% Similarity=0.611 Sum_probs=47.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.||++||++|....+.+.++ ++...+ +.++.++.+..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPAL---------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHH---------------------hhHHHhCCCcccc
Confidence 4789999999999999999998 333433 88998887766431 1114568889999
Q ss_pred eEEEEcC
Q 014225 145 CLVVLQP 151 (428)
Q Consensus 145 ~~~lid~ 151 (428)
+++++++
T Consensus 56 ~~~~~~~ 62 (69)
T cd01659 56 TLVVFGP 62 (69)
T ss_pred EEEEEeC
Confidence 9999996
No 293
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.84 E-value=2.3e-05 Score=65.84 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=45.9
Q ss_pred cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
++.+..+..++.|..+|||.|+...|.|.++++..+ ++++=.+..|++.+.+..|+ .
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~l-------------------t 92 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYL-------------------T 92 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTT-------------------T
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHH-------------------h
Confidence 344556788999999999999999999999999853 26666665655543111111 1
Q ss_pred hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 136 RKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 136 ~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
.|..++|+++++|. +|+.+.+
T Consensus 93 --~g~~~IP~~I~~d~---~~~~lg~ 113 (129)
T PF14595_consen 93 --NGGRSIPTFIFLDK---DGKELGR 113 (129)
T ss_dssp ---SS--SSEEEEE-T---T--EEEE
T ss_pred --CCCeecCEEEEEcC---CCCEeEE
Confidence 46789999999998 8876644
No 294
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.81 E-value=0.00026 Score=59.26 Aligned_cols=89 Identities=9% Similarity=0.086 Sum_probs=65.5
Q ss_pred EEEEEec--cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225 229 VGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 306 (428)
Q Consensus 229 vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 306 (428)
.+|+|-+ .-+|-+.-..-.|.++.++|.+. ++.++.|++|.+ ..++
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~LA 84 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAIG 84 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHHH
Confidence 4454443 24666777777888999998633 488999988866 7899
Q ss_pred HhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225 307 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 364 (428)
Q Consensus 307 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~ 364 (428)
..|||.++||++++ ++|+.+.+..+ ... .+++.+.|++++...
T Consensus 85 ~~fgV~siPTLl~F-kdGk~v~~i~G-------~~~-------k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 85 DRFGVFRFPATLVF-TGGNYRGVLNG-------IHP-------WAELINLMRGLVEPQ 127 (132)
T ss_pred HHcCCccCCEEEEE-ECCEEEEEEeC-------cCC-------HHHHHHHHHHHhcCc
Confidence 99999999999999 99999987433 111 256677777776643
No 295
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00011 Score=62.89 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=57.1
Q ss_pred cccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 014225 41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105 (428)
Q Consensus 41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D 105 (428)
..=|| ..+.+|+.|+|+.++||++||.--||-|+.-...-..|+.++++|+++| ++|++...+
T Consensus 13 siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred ceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 34567 8899999999999999999999999999988877779999999999999 999998764
No 296
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00063 Score=57.51 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=61.4
Q ss_pred ccCCcEEEEEEeccCChhHHhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225 223 SLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 299 (428)
Q Consensus 223 ~~~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~ 299 (428)
.-.+|..++.|-.+.|++|.++...+. ++.+-+.. ++.++.+.+..+.. ..+-.+.
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g~ 97 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVGD 97 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecCc
Confidence 345799999999999999999877664 34444443 47777777654321 1111111
Q ss_pred ----cchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225 300 ----PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 300 ----d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
-...++++.|+|+++|+++++|.+|+.+..
T Consensus 98 kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eeeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 135699999999999999999999988776
No 297
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.73 E-value=0.00015 Score=54.56 Aligned_cols=63 Identities=16% Similarity=0.345 Sum_probs=40.4
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH-h
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y 308 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~ 308 (428)
+..||++|||+|++..+.|.++ ++.+-.++++.+.... ..+.. .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~~-------------------~~~~~~~ 46 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGAA-------------------DRVVSVN 46 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhHH-------------------HHHHHHh
Confidence 5678999999999998877543 2344556666543210 11111 2
Q ss_pred cCcCccceEEEECCCCcEEec
Q 014225 309 FDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 309 ~~v~~~P~~~lid~~G~i~~~ 329 (428)
+++.++|++ ++ .+|+++..
T Consensus 47 ~~~~~vP~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 47 NGNMTVPTV-KF-ADGSFLTN 65 (77)
T ss_pred CCCceeCEE-EE-CCCeEecC
Confidence 588999986 46 57777654
No 298
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.63 E-value=9.4e-05 Score=75.52 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=56.2
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
.++|+|+|+|+|.||--|+.+.+..- +....++-. ++..+-+++..+. +.+
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---------~~vlLqaDvT~~~-------------------p~~ 523 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---------DVVLLQADVTAND-------------------PAI 523 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---------CeEEEEeeecCCC-------------------HHH
Confidence 34569999999999999999877553 444444433 5666665554321 235
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEec
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
.++.++|++-+.|++++++++|+-...
T Consensus 524 ~~lLk~~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 524 TALLKRLGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCcCcC
Confidence 778889999999999999999965443
No 299
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.63 E-value=0.0005 Score=50.93 Aligned_cols=59 Identities=27% Similarity=0.561 Sum_probs=42.3
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
+..|+++|||+|+...+.|.+ . ++.+..++++.+... ..++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL 46 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence 457899999999998877654 2 467777787755321 13466778
Q ss_pred CcCccceEEEECCCCcE
Q 014225 310 DVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i 326 (428)
++.++|++++ + |++
T Consensus 47 ~~~~vP~~~~-~--~~~ 60 (74)
T TIGR02196 47 GQRGVPVIVI-G--HKI 60 (74)
T ss_pred CCCcccEEEE-C--CEE
Confidence 9999999876 3 555
No 300
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.58 E-value=0.00023 Score=52.76 Aligned_cols=55 Identities=20% Similarity=0.537 Sum_probs=40.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
+..|+++||++|+...+.|.+ .+ +.+..++++.+... ...+.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~--------------------~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA--------------------REEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH--------------------HHHHHHHhCCCccc
Confidence 467999999999998877654 34 66777777655431 14567778999999
Q ss_pred eEEE
Q 014225 145 CLVV 148 (428)
Q Consensus 145 ~~~l 148 (428)
++++
T Consensus 53 ~~~~ 56 (74)
T TIGR02196 53 VIVI 56 (74)
T ss_pred EEEE
Confidence 8876
No 301
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.57 E-value=0.00016 Score=55.55 Aligned_cols=65 Identities=23% Similarity=0.398 Sum_probs=44.6
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|+++|||+|....+.|.++. +.. .+.++-|+.+.+..... ..+.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~----------~~~~~~v~~~~~~~~~~------------------~~l~~~~ 50 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP----------AYEVVELDQLSNGSEIQ------------------DYLEEIT 50 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC----------CCEEEEeeCCCChHHHH------------------HHHHHHh
Confidence 46789999999999999988765 221 26777777664433222 3356667
Q ss_pred CcCccceEEEECCCCcEE
Q 014225 310 DVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~ 327 (428)
++.++|+++ + +|+.+
T Consensus 51 g~~~vP~v~-i--~g~~i 65 (84)
T TIGR02180 51 GQRTVPNIF-I--NGKFI 65 (84)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 899999985 3 45544
No 302
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.57 E-value=0.00098 Score=54.86 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=51.3
Q ss_pred cCCcEEEEEEecc----CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225 224 LVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 299 (428)
Q Consensus 224 ~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~ 299 (428)
-.+|.++|+|+++ ||.+|+..+.. .++.+-+.. ++-+.+.+++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e------------------- 64 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE------------------- 64 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH-------------------
Confidence 4579999999999 88899774432 233333332 4655555555332
Q ss_pred cchhHHHHhcCcCccceEEEE---CCCCcEEec
Q 014225 300 PTIKELTKYFDVQGIPCLVII---GPEGKTVTK 329 (428)
Q Consensus 300 d~~~~~~~~~~v~~~P~~~li---d~~G~i~~~ 329 (428)
...++..+++.++|++.++ +.+.+++.+
T Consensus 65 --g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 65 --GYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred --HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 2678999999999999999 555566666
No 303
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.51 E-value=0.00016 Score=73.89 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=53.2
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHHH-HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVLV-DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 137 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 137 (428)
-++|+|+|+|||.||-.|+..-+..- +.....+-.+ ++.+..|-+.+ +.. +.++.++
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~----~vlLqaDvT~~-----------------~p~-~~~lLk~ 529 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVTAN-----------------DPA-ITALLKR 529 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC----eEEEEeeecCC-----------------CHH-HHHHHHH
Confidence 35569999999999999999876554 4444444443 44444454432 322 3788999
Q ss_pred cCCCCCceEEEEcCCCCCCCc
Q 014225 138 FDIEGIPCLVVLQPYDDKDDA 158 (428)
Q Consensus 138 ~~v~~~P~~~lid~~~~dG~i 158 (428)
|++-+.|+++++++ +|..
T Consensus 530 ~~~~G~P~~~ff~~---~g~e 547 (569)
T COG4232 530 LGVFGVPTYLFFGP---QGSE 547 (569)
T ss_pred cCCCCCCEEEEECC---CCCc
Confidence 99999999999998 7744
No 304
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.50 E-value=0.00054 Score=56.36 Aligned_cols=78 Identities=22% Similarity=0.477 Sum_probs=49.1
Q ss_pred CCcEEEEEEec-------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225 225 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 297 (428)
Q Consensus 225 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~ 297 (428)
.|++++|.|++ +|||.|.+..|.+.+......+ +..+|.+.+. +...|+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG-~r~~Wkd------------ 74 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVG-DRPEWKD------------ 74 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE----HHHHC-------------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcC-CHHHhCC------------
Confidence 35677777774 4999999999999988776432 5778888775 3333432
Q ss_pred CCcchhHHHH--hcCcCccceEEEECCCCcEEe
Q 014225 298 GDPTIKELTK--YFDVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 298 ~~d~~~~~~~--~~~v~~~P~~~lid~~G~i~~ 328 (428)
.+..+.. .++++++||++-++..+++..
T Consensus 75 ---p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 75 ---PNNPFRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp ---TTSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred ---CCCCceEcceeeeeecceEEEECCCCccch
Confidence 1244444 689999999999977766554
No 305
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.48 E-value=0.00083 Score=63.19 Aligned_cols=95 Identities=11% Similarity=0.146 Sum_probs=57.0
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc---CC-CH-------------HHHHHH
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DR-DQ-------------TSFESY 286 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~---d~-~~-------------~~~~~~ 286 (428)
-.++.+++.|.-+.||+|+++...+.++.+.- +++|..+.+ .. +. ..|..+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g------------~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~ 182 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDSG------------KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY 182 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhcC------------ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence 34688999999999999999998877655431 244444432 11 11 112211
Q ss_pred HhcCCc--ccccc--------CCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 287 FGTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 287 ~~~~~~--~~~~~--------~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
...... +.-+- ..+.+..+.+.+|++++|++|+.|.+|.+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~ 236 (251)
T PRK11657 183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVV 236 (251)
T ss_pred HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEec
Confidence 111110 00000 111345688899999999999999999875443
No 306
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.48 E-value=0.00017 Score=65.92 Aligned_cols=65 Identities=17% Similarity=0.349 Sum_probs=56.9
Q ss_pred cccccccCc-cccCCCCE-EecccCC--CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEE
Q 014225 37 LLASKDRDY-LLNQHGTQ-VKVSDLE--GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 102 (428)
Q Consensus 37 ~~g~~~pdf-l~~~~G~~-v~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~v 102 (428)
.+|..|||+ +.+.+|+. .++.++. +++++|+|.+-.|||=+..+..+++++++|.+. .++-+|.|
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI 142 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI 142 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence 579999999 99999999 9999994 689999999999999999999999999999986 23555554
No 307
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.48 E-value=0.00026 Score=54.27 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=41.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|+++|||+|....+.|.++. +.. .++++-|+.+.+.. .....+.+.++..++|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~-------------------~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGS-------------------EIQDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 47899999999999999888765 221 26666665554332 1114566778889999
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
+++ ++
T Consensus 57 ~v~-i~ 61 (84)
T TIGR02180 57 NIF-IN 61 (84)
T ss_pred eEE-EC
Confidence 874 44
No 308
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.40 E-value=0.00064 Score=51.06 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=39.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh-hcCCCCC
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KFDIEGI 143 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~v~~~ 143 (428)
++.||++||++|++..+.|.++ + +.+-.+++|.+... . ..+.+ .++..++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~-----------------~---~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA-----------------A---DRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH-----------------H---HHHHHHhCCCcee
Confidence 5689999999999988877543 3 33445556554320 0 22222 2578899
Q ss_pred ceEEEEcCCCCCCCcccc
Q 014225 144 PCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 144 P~~~lid~~~~dG~i~~~ 161 (428)
|++ +++ +|.++..
T Consensus 53 P~i-~~~----~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KFA----DGSFLTN 65 (77)
T ss_pred CEE-EEC----CCeEecC
Confidence 986 466 5655543
No 309
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.39 E-value=0.00061 Score=59.06 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=40.3
Q ss_pred cCCCCEEEEEEecCCChhhhhhHH-HH--HHHHHHHhcCCCcEEEEEEecCCCh--HHHHHHHhcCCCceeccCChHHHH
Q 014225 58 DLEGKVTALYFSANWYPPCGNFTG-VL--VDVYEELRNNGSDFEVVFVSSDEDL--NAFNNYRACMPWLAVPYSDLETKK 132 (428)
Q Consensus 58 ~~~gk~vlv~F~a~wC~~C~~~~p-~l--~~l~~~~~~~~~~~~ii~vs~D~~~--~~~~~~~~~~~~~~~~~~d~~~~~ 132 (428)
.-++|+|+|.+.++||..|..+.. .+ .++++.+.++ +|.|-+|.++ +--..|+ .
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~----------------~ 92 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYM----------------N 92 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHH----------------H
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHH----------------H
Confidence 346899999999999999998753 11 1234444333 4444455443 2100000 1
Q ss_pred HHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 133 ALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 133 ~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
......|..+.|+++++++ +|+.+..
T Consensus 93 ~~~~~~~~gGwPl~vfltP---dg~p~~~ 118 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTP---DGKPFFG 118 (163)
T ss_dssp HHHHHHS---SSEEEEE-T---TS-EEEE
T ss_pred HHHHhcCCCCCCceEEECC---CCCeeee
Confidence 1112237889999999999 9988754
No 310
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00028 Score=62.87 Aligned_cols=91 Identities=20% Similarity=0.400 Sum_probs=67.5
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+.+.++|.||+.|.|-|..+.|.+.++..+|... ++.+-.|.+..= .+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGrf-----------------------pd 190 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGRF-----------------------PD 190 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeeccC-----------------------cC
Confidence 3468999999999999999999999999999865 677777766543 34
Q ss_pred HHHhcCc------CccceEEEECCCCcEEeccccchhhcc-cccCCCCChHHH
Q 014225 305 LTKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLY-QENAYPFTEAKL 350 (428)
Q Consensus 305 ~~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~-g~~~~p~~~~~~ 350 (428)
.+..|+| +..||++++ .+|+-+.+. ..+..- .+..|||+++.+
T Consensus 191 ~a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 191 VAAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENV 240 (265)
T ss_pred hHHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHH
Confidence 5566666 578999999 888877663 333333 344578887643
No 311
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.35 E-value=0.00044 Score=56.87 Aligned_cols=74 Identities=22% Similarity=0.470 Sum_probs=44.6
Q ss_pred CCCEEEEEEecC-------CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHH
Q 014225 60 EGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 132 (428)
Q Consensus 60 ~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 132 (428)
.|++++|.|+++ |||.|+...|.+++......+. ..+|.|.+... ..|+ +.+..-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~r-~~Wk--------------dp~n~f 79 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGDR-PEWK--------------DPNNPF 79 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE---H-HHHC---------------TTSHH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCCH-HHhC--------------CCCCCc
Confidence 467888888864 9999999999999988885443 67777765322 2121 111001
Q ss_pred HHHhhcCCCCCceEEEEcC
Q 014225 133 ALNRKFDIEGIPCLVVLQP 151 (428)
Q Consensus 133 ~l~~~~~v~~~P~~~lid~ 151 (428)
+.-..+++.++||++-++.
T Consensus 80 R~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp HH--CC---SSSEEEECTS
T ss_pred eEcceeeeeecceEEEECC
Confidence 2223689999999999986
No 312
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.31 E-value=0.0043 Score=46.87 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=40.5
Q ss_pred eccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc
Q 014225 234 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG 313 (428)
Q Consensus 234 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 313 (428)
++++|+.|......++++...+. +.+=.+.. .+. .++ ..|||.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~~----------------------~~~-~~ygv~~ 49 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-EDF----------------------EEI-EKYGVMS 49 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TTH----------------------HHH-HHTT-SS
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cCH----------------------HHH-HHcCCCC
Confidence 67789999988888888877763 33333333 231 455 8999999
Q ss_pred cceEEEECCCCcEEecc
Q 014225 314 IPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 314 ~P~~~lid~~G~i~~~~ 330 (428)
+|++ +| ||+++..+
T Consensus 50 vPal-vI--ng~~~~~G 63 (76)
T PF13192_consen 50 VPAL-VI--NGKVVFVG 63 (76)
T ss_dssp SSEE-EE--TTEEEEES
T ss_pred CCEE-EE--CCEEEEEe
Confidence 9999 45 48888764
No 313
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.30 E-value=0.0037 Score=58.10 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=53.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-----C--------------HHHHHH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----D--------------QTSFES 285 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-----~--------------~~~~~~ 285 (428)
.|+.+++.|..+.||+|+++.+.+.++.+ . ++.|..+.... . ...+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~ 172 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD 172 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence 36788999999999999999988876543 2 35555443221 1 011222
Q ss_pred HHhcCCcc--ccccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225 286 YFGTMPWL--ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 286 ~~~~~~~~--~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 327 (428)
........ ......+...++++.+||+++|+++ + +||+++
T Consensus 173 ~~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 173 AMKGKDVSPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred HHcCCCCCcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 22211100 0111223567889999999999988 5 678776
No 314
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0016 Score=56.15 Aligned_cols=114 Identities=18% Similarity=0.320 Sum_probs=81.9
Q ss_pred ccccccCc-cccCCCCEEecccCCCCEEEEEEe--cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHHH
Q 014225 38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAFN 112 (428)
Q Consensus 38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~~~~ 112 (428)
+|+.+|+| .-+..| .+++.++-|.-+.|.|. |..-|-|..++..+.+++-+|.+++ +..|++|+|..+ ..|-
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWI 84 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHH
Confidence 79999999 666666 59999999998888887 6778999999999999999999998 999999998643 3333
Q ss_pred HHH----hcCCC-ceecc-CChHHHHHHHhhcCCC--------C----CceEEEEcCCCCCCCcc
Q 014225 113 NYR----ACMPW-LAVPY-SDLETKKALNRKFDIE--------G----IPCLVVLQPYDDKDDAT 159 (428)
Q Consensus 113 ~~~----~~~~~-~~~~~-~d~~~~~~l~~~~~v~--------~----~P~~~lid~~~~dG~i~ 159 (428)
+-+ +..+- ..+|. +|.. .+++-.|++- + .-..++|++ +.++.
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~--rela~~l~MlD~~e~~~~~~~~T~Ravfvi~p---dkKir 144 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPN--RELAFLLNMLDPEEKKNIGDGKTVRAVFVIDP---DKKIR 144 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCc--hhhhhhhcccCHhHcCCCCCCceEEEEEEECC---CceEE
Confidence 333 22220 12222 2332 6777777651 2 336788888 77664
No 315
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.22 E-value=0.0022 Score=49.49 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=45.5
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
+..|+.+|||+|.+....|+++..++. ++.+..++++.+..+. .++.+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~~-------------------~el~~~~ 52 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGISK-------------------ADLEKTV 52 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHHH-------------------HHHHHHH
Confidence 567889999999999999999886643 4677777777543211 2333333
Q ss_pred --CcCccceEEEECCCCcEEe
Q 014225 310 --DVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 310 --~v~~~P~~~lid~~G~i~~ 328 (428)
++..+|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~if-i--~g~~ig 70 (85)
T PRK11200 53 GKPVETVPQIF-V--DQKHIG 70 (85)
T ss_pred CCCCCcCCEEE-E--CCEEEc
Confidence 458899986 4 566653
No 316
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.16 E-value=0.00022 Score=47.42 Aligned_cols=30 Identities=33% Similarity=0.837 Sum_probs=27.7
Q ss_pred ccccccCCCCceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|++|++...|-.|+|..| +|||+..|-..
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 6999999999999999999 89999999754
No 317
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.16 E-value=0.018 Score=60.10 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=49.3
Q ss_pred cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
..+.++.-+..|..+.||+|......+++++.. .+++..-.| |...
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-----------~~~i~~~~i--d~~~--------------------- 157 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-----------NPNITHTMI--DGAL--------------------- 157 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-----------CCCceEEEE--Echh---------------------
Confidence 344556678889999999999877777666653 234555555 4322
Q ss_pred hhHHHHhcCcCccceEEEECCCCcEEec
Q 014225 302 IKELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
..++++.|++.++|++|+ +|+.+..
T Consensus 158 ~~~~~~~~~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 158 FQDEVEARNIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CHhHHHhcCCcccCEEEE---CCcEEEe
Confidence 378899999999999975 3444443
No 318
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0026 Score=53.84 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=59.8
Q ss_pred cCCCCEEEEEEecCCChhhhhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCC---hHHH
Q 014225 58 DLEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD---LETK 131 (428)
Q Consensus 58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d---~~~~ 131 (428)
.-+||..++.|-.+.|++|..+-..+. ++.+-++++ +.++.+.+..... ..+-.++ ....
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~ 104 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMST 104 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecH
Confidence 346899999999999999998765543 356666665 7777776533321 0000111 1233
Q ss_pred HHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225 132 KALNRKFDIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 132 ~~l~~~~~v~~~P~~~lid~~~~dG~i~~ 160 (428)
.++++.|+++++|+++++|. +|+.+.
T Consensus 105 ~ELa~kf~vrstPtfvFfdk---~Gk~Il 130 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDK---TGKTIL 130 (182)
T ss_pred HHHHHHhccccCceEEEEcC---CCCEEE
Confidence 79999999999999999999 886654
No 319
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.02 E-value=0.0041 Score=56.23 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred ecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--C--------------HHH
Q 014225 219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS 282 (428)
Q Consensus 219 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--~--------------~~~ 282 (428)
+.+..-.++++++.|+.+.||+|+++.+.+.+ .... -.+.++.+.... + .+.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~--------v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a 137 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADG--------VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA 137 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCc--------eEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence 33433447889999999999999999998876 1111 134444444432 1 112
Q ss_pred HHHHHhcCCcc-cc---ccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225 283 FESYFGTMPWL-AL---PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 283 ~~~~~~~~~~~-~~---~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 327 (428)
|.+........ .. ....+.+..+++.+||+++|+++ + .+|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 22222221110 11 11223566889999999999997 5 567764
No 320
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00064 Score=61.12 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=55.8
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+++.+++.||++||.+|.++...+..+.+.++ ++.++.+..+.. .+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-----------~~~~~k~~a~~~-----------------------~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-----------NAQFLKLEAEEF-----------------------PE 61 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-----------hheeeeehhhhh-----------------------hH
Confidence 57889999999999999999999998888773 345555554432 78
Q ss_pred HHHhcCcCccceEEEECCCCcEEec
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
++..+.+...|+++++ ..|+.+.+
T Consensus 62 is~~~~v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HHHHHHHhcCceeeee-ecchhhhh
Confidence 8999999999999888 77766655
No 321
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.95 E-value=0.0038 Score=51.35 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=48.7
Q ss_pred cCCCCEEEEEEecC----CChhhhhhH--HHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHH
Q 014225 58 DLEGKVTALYFSAN----WYPPCGNFT--GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 131 (428)
Q Consensus 58 ~~~gk~vlv~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 131 (428)
.-.+|.++|+++++ ||..|+..+ |.+.+..+ . + +.+.+.++...+.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~-~--fv~w~~dv~~~eg---------------------- 65 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T-R--MLFWACSVAKPEG---------------------- 65 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c-C--EEEEEEecCChHH----------------------
Confidence 34679999999999 999998776 65555543 2 2 5555554443322
Q ss_pred HHHHhhcCCCCCceEEEEcC
Q 014225 132 KALNRKFDIEGIPCLVVLQP 151 (428)
Q Consensus 132 ~~l~~~~~v~~~P~~~lid~ 151 (428)
.+++..+++.++|++++|.+
T Consensus 66 ~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 66 YRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEe
Confidence 78999999999999999975
No 322
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.89 E-value=0.042 Score=57.37 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=45.0
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
+..+.++.-+..|..+.||+|+.....++++... .+++..-. +|...
T Consensus 112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-----------~p~i~~~~--id~~~-------------------- 158 (515)
T TIGR03140 112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL-----------NPNISHTM--IDGAL-------------------- 158 (515)
T ss_pred HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-----------CCCceEEE--EEchh--------------------
Confidence 3445566678889999999998766666555544 23455443 34322
Q ss_pred chhHHHHhcCcCccceEEE
Q 014225 301 TIKELTKYFDVQGIPCLVI 319 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~l 319 (428)
..++++.|++.++|++|+
T Consensus 159 -~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 159 -FQDEVEALGIQGVPAVFL 176 (515)
T ss_pred -CHHHHHhcCCcccCEEEE
Confidence 378899999999999986
No 323
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.81 E-value=0.0071 Score=43.21 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=40.8
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|+.+|||+|.+....|.+ . ++.+-.++++.+.+. ..++.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K---------GIPYEEVDVDEDEEA-------------------REELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence 467889999999998777632 2 567777777755321 24455555
Q ss_pred CcCccceEEEECCCCcE
Q 014225 310 DVQGIPCLVIIGPEGKT 326 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i 326 (428)
|..++|++++ +|+.
T Consensus 46 g~~~~P~v~i---~g~~ 59 (60)
T PF00462_consen 46 GVRTVPQVFI---DGKF 59 (60)
T ss_dssp SSSSSSEEEE---TTEE
T ss_pred CCCccCEEEE---CCEE
Confidence 9999999985 5544
No 324
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.78 E-value=0.016 Score=52.15 Aligned_cols=113 Identities=18% Similarity=0.360 Sum_probs=79.8
Q ss_pred cCCCCccc-CCCCCceecccc-cCCcE-EEEEEe------ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225 204 NHDRGYLL-GHPPDEKVPVSS-LVGKT-VGLYFS------ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274 (428)
Q Consensus 204 ~~~p~f~l-~~~g~~~v~l~~-~~gk~-vll~F~------a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i 274 (428)
.-..++.+ ..+| +++|.+ |.|+- ++|+.+ ..-|+.|...+..+.-....+.++ ++.++.|
T Consensus 44 ~v~~~Y~F~g~~G--~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~v 112 (211)
T PF05988_consen 44 EVDKDYVFDGPDG--PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVV 112 (211)
T ss_pred cCCCCeEEeCCCC--cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEE
Confidence 33446778 5555 588988 56753 333322 235999999999997777777766 7899999
Q ss_pred EcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc-----CccceEEEECCC-CcEEec
Q 014225 275 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK 329 (428)
Q Consensus 275 s~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-----~~~P~~~lid~~-G~i~~~ 329 (428)
|-. ..+++..|.+.|+|- ||..+.....+...|++ ...|.+-++=++ |+|...
T Consensus 113 Sra-P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 113 SRA-PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred eCC-CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 865 788999999999987 88877766777778887 456655444344 455544
No 325
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.68 E-value=0.00096 Score=44.74 Aligned_cols=30 Identities=37% Similarity=1.005 Sum_probs=26.2
Q ss_pred ccccccCCC-CceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~~~g-~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|++|++.. .|-.|+|..| +|||+..|-..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 699999644 5999999999 89999999764
No 326
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.56 E-value=0.018 Score=52.07 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=56.6
Q ss_pred EecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh----------------HHHHHHHhc
Q 014225 54 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL----------------NAFNNYRAC 117 (428)
Q Consensus 54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~----------------~~~~~~~~~ 117 (428)
+.+..-.+++.++.|..+.||+|+++.+.+.+ ...+..+.++.+.+.... +.|.++...
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 44444457899999999999999999988876 122323555555543311 112222211
Q ss_pred CCC---ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225 118 MPW---LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 158 (428)
Q Consensus 118 ~~~---~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i 158 (428)
... ......+.+....+++.+|+.++|+++ +. ||+.
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~----~G~~ 183 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA----DGRV 183 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC----CCeE
Confidence 111 001112334557899999999999987 54 5654
No 327
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.47 E-value=0.0015 Score=44.15 Aligned_cols=33 Identities=24% Similarity=0.684 Sum_probs=29.4
Q ss_pred cccccccCCCCceeEeccCC-CCCCccccccccC
Q 014225 389 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD 421 (428)
Q Consensus 389 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 421 (428)
|.|++|++...|-.|+|..| +|||+..|-....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 57999999889999999999 5999999987653
No 328
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.46 E-value=0.013 Score=55.40 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=55.1
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
++.+|||.||-+.++.|..+...|..|+.+|. .++|+-|..... .
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~-----------------------~- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC-----------------------P- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC-----------------------C-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc-----------------------C-
Confidence 35689999999999999999999999999987 468888876522 1
Q ss_pred HHHhcCcCccceEEEECCCCcEEecccc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
+...|....+|+++++ ++|.++....+
T Consensus 190 ~~~~f~~~~LPtllvY-k~G~l~~~~V~ 216 (265)
T PF02114_consen 190 ASENFPDKNLPTLLVY-KNGDLIGNFVG 216 (265)
T ss_dssp TTTTS-TTC-SEEEEE-ETTEEEEEECT
T ss_pred cccCCcccCCCEEEEE-ECCEEEEeEEe
Confidence 4567889999999999 89998887543
No 329
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.45 E-value=0.038 Score=50.37 Aligned_cols=116 Identities=9% Similarity=0.122 Sum_probs=79.3
Q ss_pred cCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225 204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 283 (428)
Q Consensus 204 ~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~ 283 (428)
.+.|.+.+ |. ...+.+..|+++||.+-..+|..|...+..|+.|..++.... ..++.++.|+--.....+
T Consensus 8 ~~~p~W~i---~~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g------~~~I~f~vVN~~~~~s~~ 77 (238)
T PF04592_consen 8 KPPPPWKI---GG-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEG------LSNISFMVVNHQGEHSRL 77 (238)
T ss_pred CCCCCceE---CC-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCC------CCceEEEEEcCCCcchhH
Confidence 34566654 22 345778899999999999999999999999999999987651 347778877754333322
Q ss_pred H-HHHhcCCccccccCC--cchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225 284 E-SYFGTMPWLALPFGD--PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 284 ~-~~~~~~~~~~~~~~~--d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 330 (428)
. ..++..--..||+.. ....++...++-..- -++|+|+-|++.+.-
T Consensus 78 ~~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 78 KYWELKRRVSEHIPVYQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYHI 126 (238)
T ss_pred HHHHHHHhCCCCCceecCCccccCHHHHhCCCcC-cEEEEeccCcEEEEe
Confidence 2 223333224577753 244667777764432 588999999999874
No 330
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.45 E-value=0.0067 Score=47.18 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=48.2
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc--CCC-----HHHHHHHHh--cCC-ccccccCC
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--DRD-----QTSFESYFG--TMP-WLALPFGD 299 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~--d~~-----~~~~~~~~~--~~~-~~~~~~~~ 299 (428)
+..|+.+.||+|....+.+.++...... ++.+....+ ... ....+.... ... ...+....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG----------GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL 70 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC----------cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH
Confidence 4678899999999999999988744433 466666654 222 111111110 000 00000000
Q ss_pred cchhHHHHhcCcCccceEEEEC
Q 014225 300 PTIKELTKYFDVQGIPCLVIIG 321 (428)
Q Consensus 300 d~~~~~~~~~~v~~~P~~~lid 321 (428)
.....+..+|+.++|++++-|
T Consensus 71 -~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 -ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred -HHHHHHHHcCCCCCCEEEECC
Confidence 456788899999999998876
No 331
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.36 E-value=0.016 Score=41.33 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=38.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|+.+||++|.+....| ...| +..-.++++.+.+ ..+.+.+..+..++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE--------------------AREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH--------------------HHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh--------------------HHHHHHHHcCCCccC
Confidence 4678999999999976655 3344 6666677766643 115555556889999
Q ss_pred eEEE
Q 014225 145 CLVV 148 (428)
Q Consensus 145 ~~~l 148 (428)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 332
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.35 E-value=0.011 Score=45.00 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=42.0
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|.++|||+|......|.++.. .+.++-|+.+.+..+.+ ..+.+..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~~------------------~~~~~~~ 49 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEIQ------------------DYLQELT 49 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHHH------------------HHHHHHh
Confidence 467889999999999888877543 24566666664422211 3455667
Q ss_pred CcCccceEEEECCCCcEE
Q 014225 310 DVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~ 327 (428)
|..++|.++ + +|+.+
T Consensus 50 g~~~~P~v~-~--~g~~i 64 (82)
T cd03419 50 GQRTVPNVF-I--GGKFI 64 (82)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 899999974 4 35554
No 333
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.33 E-value=0.011 Score=45.66 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.5
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225 64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 107 (428)
Q Consensus 64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~ 107 (428)
-++.|+.+||++|.+....|+++..+++ + +.+..++++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence 3678999999999999999998887652 3 66777777654
No 334
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=96.31 E-value=0.047 Score=51.25 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=78.2
Q ss_pred CCCCccc-CCCCCceecccc-cCCcEEEEEEec-cCChhHHhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225 205 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFSA-RWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 280 (428)
Q Consensus 205 ~~p~f~l-~~~g~~~v~l~~-~~gk~vll~F~a-~wC~~C~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~ 280 (428)
..|++.. +++|+ .+++.+ ++||+.||..++ .|-. .+...+. ....+|... .+..+++|-|++..+.
T Consensus 100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~ge---~~~~sw~~p~~~~~~~~------~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWGE---EMVDSWTSPFLEDFLQE------PYGRVQIVEINLIENW 169 (252)
T ss_pred cCCCCccccCCCC-CcccccccCCceEEEEEeehHHHH---HHHHHHhhHHHHHHhhC------CCCceEEEEEecchHH
Confidence 4688888 88888 777766 689986655554 4433 3333222 233344332 1227999999987543
Q ss_pred H-H-HHHHH-hcC----C---ccccccCCc--chhHHHHhcCcC--ccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225 281 T-S-FESYF-GTM----P---WLALPFGDP--TIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 346 (428)
Q Consensus 281 ~-~-~~~~~-~~~----~---~~~~~~~~d--~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 346 (428)
- . +...+ ..+ + |-.+-+..+ ....+.+.+++. -+..+||||.+|+|+....| +.+
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At 238 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PAT 238 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCC
Confidence 2 1 11111 111 1 222222222 256777888875 45679999999999998655 456
Q ss_pred hHHHHHHHHHHH
Q 014225 347 EAKLEFLEKQME 358 (428)
Q Consensus 347 ~~~~~~L~~~l~ 358 (428)
++.++.|.+.+.
T Consensus 239 ~~E~~~L~k~~~ 250 (252)
T PF05176_consen 239 PEELESLWKCVK 250 (252)
T ss_pred HHHHHHHHHHHh
Confidence 667777766553
No 335
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.30 E-value=0.0018 Score=43.75 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=26.9
Q ss_pred ccccccCCCCceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|++|++.-.+-.|+|..| +|||...|-..
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999999889999999999 89999999643
No 336
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.19 E-value=0.0026 Score=41.60 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=27.1
Q ss_pred ccccccC-CCCceeEeccCC-CCCCcccccccc
Q 014225 390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 420 (428)
Q Consensus 390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~~ 420 (428)
.||+|+. .-.|-.|+|..| +|||...|-...
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 6999998 558899999999 899999997653
No 337
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0075 Score=48.78 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=47.3
Q ss_pred CCCEEEEEEec--------CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHH
Q 014225 60 EGKVTALYFSA--------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 131 (428)
Q Consensus 60 ~gk~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 131 (428)
+|+.+++.|.+ +|||.|.+..|.+.+..+...+ ++.+|.|.+...+. |. +..
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~----------Wk-----~p~-- 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPY----------WK-----DPA-- 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCc----------cc-----CCC--
Confidence 56678888875 6999999999999888775443 37777765543221 21 111
Q ss_pred HHHHhhcCC-CCCceEEEEcC
Q 014225 132 KALNRKFDI-EGIPCLVVLQP 151 (428)
Q Consensus 132 ~~l~~~~~v-~~~P~~~lid~ 151 (428)
....+..++ +++||++=.+.
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 233344555 89999888873
No 338
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.13 E-value=0.029 Score=41.09 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=35.9
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|+++||++|.+....|.+ . ++.+..+.+|.+.... .++.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~~-------------------~~~~~~~ 46 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEAL-------------------EELKKLN 46 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHHH-------------------HHHHHHc
Confidence 467889999999997776654 2 3556666776543211 2333444
Q ss_pred CcCccceEEE
Q 014225 310 DVQGIPCLVI 319 (428)
Q Consensus 310 ~v~~~P~~~l 319 (428)
++.++|++++
T Consensus 47 ~~~~vP~i~~ 56 (73)
T cd02976 47 GYRSVPVVVI 56 (73)
T ss_pred CCcccCEEEE
Confidence 7889999865
No 339
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.09 E-value=0.024 Score=53.28 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=54.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec---CC-------------Ch-HHHHHHHhcCCCc-
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS---DE-------------DL-NAFNNYRACMPWL- 121 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~---D~-------------~~-~~~~~~~~~~~~~- 121 (428)
.+|.+++.|.-+.||+|+++.+.+.++.+. | ++++..+.+ .. +. ..+..+...+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 568899999999999999999888776543 2 144433321 11 11 1122222111110
Q ss_pred -eecc--C-----ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225 122 -AVPY--S-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 158 (428)
Q Consensus 122 -~~~~--~-----d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i 158 (428)
..+- . ..+.+..+.+.+|++++|++++.|. +|++
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~---~G~~ 232 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK---DGTL 232 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 0000 0 1123456888999999999999998 8864
No 340
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.07 E-value=0.054 Score=50.33 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC--C-C----------------hHHHHHHHhcCCC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--E-D----------------LNAFNNYRACMPW 120 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D--~-~----------------~~~~~~~~~~~~~ 120 (428)
.||.+++.|.-+.||+|++..+.+.++.+ .+ +++..+... . . ...+.+.+.....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 57899999999999999999988876533 34 656554321 1 0 0112222221111
Q ss_pred c-eeccCChHHHHHHHhhcCCCCCceEEE
Q 014225 121 L-AVPYSDLETKKALNRKFDIEGIPCLVV 148 (428)
Q Consensus 121 ~-~~~~~d~~~~~~l~~~~~v~~~P~~~l 148 (428)
. .....+.+.+.++++.+|++++|++++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~ 208 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL 208 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE
Confidence 0 011123345688999999999999884
No 341
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0077 Score=53.87 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=51.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+.+.++|.|+|.|-+.|+...|.+.++..+|...+ +.+-.|.+..- ...+.+|+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf------------------------pd~a~kfr 196 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF------------------------PDVAAKFR 196 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC------------------------cChHHhee
Confidence 34589999999999999999999999999998876 33333322211 23444555
Q ss_pred C------CCCceEEEEcCCCCCCCcccc
Q 014225 140 I------EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v------~~~P~~~lid~~~~dG~i~~~ 161 (428)
| +.+||++++. +|+-+.+
T Consensus 197 is~s~~srQLPT~ilFq----~gkE~~R 220 (265)
T KOG0914|consen 197 ISLSPGSRQLPTYILFQ----KGKEVSR 220 (265)
T ss_pred eccCcccccCCeEEEEc----cchhhhc
Confidence 4 5689999999 5765544
No 342
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.023 Score=46.07 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=47.8
Q ss_pred CcEEEEEEec--------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225 226 GKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 297 (428)
Q Consensus 226 gk~vll~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~ 297 (428)
|+.+.+.|.+ +|||.|.+..|.+.+..+.... ++.+|.+.+..- ..|
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~----------~~~~v~v~VG~r-p~W-------------- 79 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE----------DVHFVHVYVGNR-PYW-------------- 79 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC----------ceEEEEEEecCC-Ccc--------------
Confidence 4446666664 5999999999999888775543 578888877532 111
Q ss_pred CCcchhHHHHhcCc-CccceEEEECC
Q 014225 298 GDPTIKELTKYFDV-QGIPCLVIIGP 322 (428)
Q Consensus 298 ~~d~~~~~~~~~~v-~~~P~~~lid~ 322 (428)
.|....+....++ .++||++=.+.
T Consensus 80 -k~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 80 -KDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred -cCCCCccccCCCceeecceeeEEcC
Confidence 1223445555566 89999988864
No 343
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.031 Score=47.17 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=77.4
Q ss_pred hhccCCCCccc-CCC------CCceecccc-cCCcEEEEEEec--cCChhHHh-hhHHHHHHHHHHHhhhhhcCCCCCCE
Q 014225 201 LLTNHDRGYLL-GHP------PDEKVPVSS-LVGKTVGLYFSA--RWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF 269 (428)
Q Consensus 201 ~~g~~~p~f~l-~~~------g~~~v~l~~-~~gk~vll~F~a--~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~ 269 (428)
.+|++.|+.++ ..- |-..++..+ ++||.|+| |.. ...|.|.. .+|-+.+++++|+++ ++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~k---------GV 73 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAK---------GV 73 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHc---------CC
Confidence 45788887776 331 221344444 57777655 443 46778877 999999999999987 44
Q ss_pred -EEEEEEcCCCHHHHHHHHhcCCcc-ccccCCcchhHHHHhcCc-----------CccceEEEECCCCcEEecc
Q 014225 270 -EVVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 270 -~iv~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 330 (428)
+|+-||++ +.--..++.+..+.- ++.+..|.+.++.+..|. ++.....|+ .||.|..-+
T Consensus 74 D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 74 DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred ceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 46777777 444444444444433 666677777888777653 555667788 899887764
No 344
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.01 E-value=0.56 Score=41.26 Aligned_cols=68 Identities=29% Similarity=0.435 Sum_probs=49.5
Q ss_pred CcE-EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 226 GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 226 gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+++ +++.|..............|.+++++++++ +.++.+..+.. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~~-----------------------~~ 140 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADDF-----------------------PR 140 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHHh-----------------------HH
Confidence 444 677776555666677778888888887754 77887777733 56
Q ss_pred HHHhcCcC--ccceEEEECCCCcE
Q 014225 305 LTKYFDVQ--GIPCLVIIGPEGKT 326 (428)
Q Consensus 305 ~~~~~~v~--~~P~~~lid~~G~i 326 (428)
+.+.||+. .+|++++++.....
T Consensus 141 ~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 141 LLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHcCCCCccCCEEEEEECCCCc
Confidence 77889997 89999999955543
No 345
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.98 E-value=0.019 Score=43.58 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=38.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|.++|||+|......|.++.. .++++-++.+.+.. +....+.+..+..++|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~-------------------~~~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGS-------------------EIQDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 477889999999998777766433 25666665554322 1114566667888999
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+ +++
T Consensus 56 ~v-~~~ 60 (82)
T cd03419 56 NV-FIG 60 (82)
T ss_pred eE-EEC
Confidence 86 444
No 346
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.97 E-value=0.023 Score=42.88 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=35.4
Q ss_pred EecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEE
Q 014225 68 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV 147 (428)
Q Consensus 68 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~ 147 (428)
+++++|+.|......++++.+.+.- +++++- . . +. ..+ ..||+.++|++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~i---~~ei~~--~--~-------------------~~---~~~-~~ygv~~vPal- 53 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELGI---EVEIID--I--E-------------------DF---EEI-EKYGVMSVPAL- 53 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTTE---EEEEEE--T--T-------------------TH---HHH-HHTT-SSSSEE-
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcCC---eEEEEE--c--c-------------------CH---HHH-HHcCCCCCCEE-
Confidence 3678899999988888888888631 244432 1 1 11 555 89999999998
Q ss_pred EEc
Q 014225 148 VLQ 150 (428)
Q Consensus 148 lid 150 (428)
+||
T Consensus 54 vIn 56 (76)
T PF13192_consen 54 VIN 56 (76)
T ss_dssp EET
T ss_pred EEC
Confidence 444
No 347
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=95.97 E-value=0.0041 Score=42.52 Aligned_cols=30 Identities=33% Similarity=0.934 Sum_probs=26.4
Q ss_pred ccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|+.|++ .-.|..|+|..| +|||...|-..
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 5999997 468999999999 89999999753
No 348
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.93 E-value=0.028 Score=41.21 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=34.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|+++||++|......|.+ .+ +.+..+++|.+.... ..+.+..++..+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~~--------------------~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEAL--------------------EELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHHH--------------------HHHHHHcCCcccC
Confidence 567899999999997766654 23 555556665543211 3334444678899
Q ss_pred eEEE
Q 014225 145 CLVV 148 (428)
Q Consensus 145 ~~~l 148 (428)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 8754
No 349
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.87 E-value=0.034 Score=42.98 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=40.3
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|..+|||+|.+....|.++..++. ++.+..++++.+... ..++.+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-----------~i~~~~idi~~~~~~-------------------~~~l~~~~ 51 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-----------DFEFRYIDIHAEGIS-------------------KADLEKTV 51 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-----------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 567788999999999888877654322 345556666543211 13344455
Q ss_pred C--cCccceEEEECCCCcEE
Q 014225 310 D--VQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 310 ~--v~~~P~~~lid~~G~i~ 327 (428)
+ +.++|.++ + +|+.+
T Consensus 52 g~~~~tVP~if-i--~g~~i 68 (86)
T TIGR02183 52 GKPVETVPQIF-V--DEKHV 68 (86)
T ss_pred CCCCCCcCeEE-E--CCEEe
Confidence 5 47899985 4 35543
No 350
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.78 E-value=0.0055 Score=41.69 Aligned_cols=31 Identities=32% Similarity=0.812 Sum_probs=27.8
Q ss_pred cccccccC-CCCceeEeccCCC---CCCccccccc
Q 014225 389 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRA 419 (428)
Q Consensus 389 ~~c~~C~~-~g~~~~~~~~~~~---~~~~~~~~~~ 419 (428)
|.|++|+. .-.|-.|+|..|. |||...|-..
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 57999998 8889999999997 9999999754
No 351
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.69 E-value=0.0065 Score=40.64 Aligned_cols=30 Identities=20% Similarity=0.729 Sum_probs=26.4
Q ss_pred ccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|++|+. .-.|-.|+|..| +|||...|-..
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 5999996 678899999999 79999999755
No 352
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.67 E-value=0.042 Score=42.55 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=48.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec--CCC-----hHHHHHHHh--cCCCceeccCChHHHHHHH
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DED-----LNAFNNYRA--CMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~--D~~-----~~~~~~~~~--~~~~~~~~~~d~~~~~~l~ 135 (428)
+..|+.+.||+|....+.+.++.....+ ++.+..+.+ ... ......... ..+ ....+.+.-......
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEALADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHHHHHHHHH
Confidence 4678999999999999999998744433 266666553 222 111111111 100 000010111337888
Q ss_pred hhcCCCCCceEEEEc
Q 014225 136 RKFDIEGIPCLVVLQ 150 (428)
Q Consensus 136 ~~~~v~~~P~~~lid 150 (428)
+.+|+.++|++++-+
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 899999999988866
No 353
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.64 E-value=0.056 Score=41.00 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=40.0
Q ss_pred EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225 229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 308 (428)
Q Consensus 229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 308 (428)
-++.|..+|||+|.+....|.+ . ++.+..++++.+.. ..++.+.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~~~ 52 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLRAV 52 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHHHH
Confidence 4567889999999998777753 2 35555566664422 1344556
Q ss_pred cCcCccceEEEECCCCcEE
Q 014225 309 FDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 309 ~~v~~~P~~~lid~~G~i~ 327 (428)
.|...+|.+++ +|+.+
T Consensus 53 ~g~~~vP~i~i---~g~~i 68 (79)
T TIGR02190 53 TGATTVPQVFI---GGKLI 68 (79)
T ss_pred HCCCCcCeEEE---CCEEE
Confidence 78899999964 46554
No 354
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.63 E-value=0.088 Score=55.53 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=53.0
Q ss_pred ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300 (428)
Q Consensus 221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d 300 (428)
+..+++.+.++.|+.+.|..|......|+++. .+.+ .+.+..+..+.+
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~----------~i~~~~~~~~~~--------------------- 408 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE----------KLNSEAVNRGEE--------------------- 408 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC----------cEEEEEeccccc---------------------
Confidence 34567778888999888988988777776665 3333 356655444332
Q ss_pred chhHHHHhcCcCccceEEEECCCCc---EEec
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPEGK---TVTK 329 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~G~---i~~~ 329 (428)
.++++.|++...|++.|++.+|. |++.
T Consensus 409 --~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 409 --PESETLPKITKLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred --hhhHhhcCCCcCCEEEEEeCCCcccceEEE
Confidence 67888999999999999976663 5554
No 355
>PHA03050 glutaredoxin; Provisional
Probab=95.55 E-value=0.044 Score=44.43 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=35.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|..+|||+|.+....|++. +-....++++- +|.... .......+.+.-|...+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~----~i~~~~~~~i~--i~~~~~-----------------~~~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF----SFKRGAYEIVD--IKEFKP-----------------ENELRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc----CCCcCCcEEEE--CCCCCC-----------------CHHHHHHHHHHcCCCCcC
Confidence 5678899999999966555432 21111244444 443211 112225666777788899
Q ss_pred eEEE
Q 014225 145 CLVV 148 (428)
Q Consensus 145 ~~~l 148 (428)
.+++
T Consensus 72 ~IfI 75 (108)
T PHA03050 72 RIFF 75 (108)
T ss_pred EEEE
Confidence 8744
No 356
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=95.53 E-value=0.0041 Score=42.06 Aligned_cols=33 Identities=27% Similarity=0.752 Sum_probs=25.5
Q ss_pred CCcccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225 387 GPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 387 ~~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
..+.|++|+. .-.|-.|+|..| +|||...|-..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 3678999999 667899999999 79999999754
No 357
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.51 E-value=0.3 Score=41.97 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=68.8
Q ss_pred eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE-EcCCC--------HHHHHHHH
Q 014225 218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRD--------QTSFESYF 287 (428)
Q Consensus 218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~iv~i-s~d~~--------~~~~~~~~ 287 (428)
.++.+.+.||+-+|...|-....=....|.+..+.+. |... .++..+| ++|+. ....+.--
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d---------~yqtttIiN~dDAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD---------KYQTTTIINLDDAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc---------ceeEEEEEecccccccchHHHHHHHHHhh
Confidence 5566778999988887765443333445555555443 4432 4565554 44432 11222222
Q ss_pred hcCCccccccCCcchhHHHHhcCcCcc-ceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHH
Q 014225 288 GTMPWLALPFGDPTIKELTKYFDVQGI-PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 357 (428)
Q Consensus 288 ~~~~~~~~~~~~d~~~~~~~~~~v~~~-P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l 357 (428)
++.||-.| ..|.++.+.+.|+...- -.++|+|++|+|++...+ ..+++.++...+.|
T Consensus 100 k~~p~s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 100 KEFPWSQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALL 157 (160)
T ss_pred hhCCCcEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHH
Confidence 33444333 44556777888877533 468899999999998544 45666665555444
No 358
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=95.45 E-value=0.011 Score=39.53 Aligned_cols=32 Identities=28% Similarity=0.814 Sum_probs=28.8
Q ss_pred CcccccccCCCCceeEeccCC-CCCCccccccc
Q 014225 388 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 388 ~~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.+.|+.|++.-.|-.|+|..| +|||.+.|-..
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 568999999888999999999 89999999754
No 359
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.32 E-value=0.04 Score=46.16 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=49.5
Q ss_pred EEEEEEec--CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 63 VTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 63 ~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
..+|+|-. --++-+....-.|.++.++|.+.. +.+..|++|.. ..++..|||
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~------------------------~~LA~~fgV 89 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQS------------------------EAIGDRFGV 89 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCC------------------------HHHHHHcCC
Confidence 45555542 234555666667888888885432 77777766654 789999999
Q ss_pred CCCceEEEEcCCCCCCCcccc
Q 014225 141 EGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 141 ~~~P~~~lid~~~~dG~i~~~ 161 (428)
.++||++|+. ||+.+..
T Consensus 90 ~siPTLl~Fk----dGk~v~~ 106 (132)
T PRK11509 90 FRFPATLVFT----GGNYRGV 106 (132)
T ss_pred ccCCEEEEEE----CCEEEEE
Confidence 9999999999 7977754
No 360
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.30 E-value=0.011 Score=40.47 Aligned_cols=31 Identities=26% Similarity=0.763 Sum_probs=27.1
Q ss_pred cccccccCCCCc-eeEeccCC-CCCCccccccc
Q 014225 389 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 389 ~~c~~C~~~g~~-~~~~~~~~-~~~~~~~~~~~ 419 (428)
|.|++|.+...+ -.|+|..| +|||...|-..
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 569999997766 89999999 89999999754
No 361
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.25 E-value=0.055 Score=43.12 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=35.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|..+|||+|.+....|. + .+ +..-.+++|.+.+ ..+....+.+..|...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~----~---~~--i~~~~vdid~~~~-----------------~~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLL----T---LG--VNPAVHEIDKEPA-----------------GKDIENALSRLGCSPAVP 63 (99)
T ss_pred EEEEECCCCHHHHHHHHHHH----H---cC--CCCEEEEcCCCcc-----------------HHHHHHHHHHhcCCCCcC
Confidence 56688899999998655443 3 23 3334455654432 111114555556778899
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+ +|+
T Consensus 64 ~V-fi~ 68 (99)
T TIGR02189 64 AV-FVG 68 (99)
T ss_pred eE-EEC
Confidence 86 455
No 362
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.22 E-value=0.067 Score=42.62 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=16.6
Q ss_pred EEEEeccCChhHHhhhHHHHH
Q 014225 230 GLYFSARWCIPCEKFMPKLLS 250 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~ 250 (428)
++.|..+|||+|.+....|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 556788999999988776554
No 363
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.15 E-value=0.072 Score=38.68 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=40.2
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|.++|||+|+.....|.+. ++.+..++++.+.+ . ...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~-~------------------~~~l~~~~ 46 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGE-L------------------REELKELS 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHH-H------------------HHHHHHHh
Confidence 4567899999999988877753 24455666665432 1 14455556
Q ss_pred CcCccceEEEECCCCcEEe
Q 014225 310 DVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~~ 328 (428)
+...+|++++ +|+.+.
T Consensus 47 ~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 47 GWPTVPQIFI---NGEFIG 62 (72)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 7788998754 566554
No 364
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.13 E-value=0.12 Score=41.50 Aligned_cols=76 Identities=16% Similarity=0.303 Sum_probs=51.7
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
.++++|+=.++.||.+......|++.++...+. +.+..+.+-... +....+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~----------~~~y~l~v~~~R-------------------~vSn~I 69 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE----------IPVYYLDVIEYR-------------------PVSNAI 69 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGH-------------------HHHHHH
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc----------ceEEEEEEEeCc-------------------hhHHHH
Confidence 467888878999999999888888877765432 677777764332 124789
Q ss_pred HHhcCcC-ccceEEEECCCCcEEeccc
Q 014225 306 TKYFDVQ-GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 306 ~~~~~v~-~~P~~~lid~~G~i~~~~~ 331 (428)
++.|||+ .-|.++|| ++|++++.-.
T Consensus 70 Ae~~~V~HeSPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 70 AEDFGVKHESPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHHHT----SSEEEEE-ETTEEEEEEE
T ss_pred HHHhCCCcCCCcEEEE-ECCEEEEECc
Confidence 9999996 67999999 9999998643
No 365
>PHA03050 glutaredoxin; Provisional
Probab=95.10 E-value=0.044 Score=44.44 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.7
Q ss_pred EEEEeccCChhHHhhhHHHHHH
Q 014225 230 GLYFSARWCIPCEKFMPKLLSI 251 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l 251 (428)
++.|..+|||+|.+....|.++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 5678999999999887776654
No 366
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.90 E-value=0.35 Score=36.88 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=35.3
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
+..|..+|||+|......|.+ + ++.+-.+.++.+.+.. ..+ +..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~~-------------------~~~-~~~ 46 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEAA-------------------ETL-RAQ 46 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHH-HHc
Confidence 456778999999987776643 2 5666677777554211 122 334
Q ss_pred CcCccceEEE
Q 014225 310 DVQGIPCLVI 319 (428)
Q Consensus 310 ~v~~~P~~~l 319 (428)
|...+|++++
T Consensus 47 g~~~vPvv~i 56 (81)
T PRK10329 47 GFRQLPVVIA 56 (81)
T ss_pred CCCCcCEEEE
Confidence 7789999864
No 367
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.85 E-value=0.065 Score=41.43 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=25.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 107 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~ 107 (428)
++.|..+|||+|.+....|.++..++. + +.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCC
Confidence 567889999999997776666543321 2 45555555533
No 368
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=0.17 Score=45.54 Aligned_cols=93 Identities=19% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCCccc-CCCCCceeccccc-CCcEEE-E--EEecc----CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225 206 DRGYLL-GHPPDEKVPVSSL-VGKTVG-L--YFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276 (428)
Q Consensus 206 ~p~f~l-~~~g~~~v~l~~~-~gk~vl-l--~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~ 276 (428)
..++.+ ..+| +.+|+++ .|+-.| | ++++| -||.|...+..+.-....+... ++.++.||-
T Consensus 52 ~K~Y~Fe~~~G--~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR 120 (247)
T COG4312 52 DKDYVFETENG--KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR 120 (247)
T ss_pred cceeEeecCCc--chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec
Confidence 446777 5566 4788884 565322 2 23355 4999999999997777777765 799999985
Q ss_pred CCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc
Q 014225 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 311 (428)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 311 (428)
- ..+++..+-+.|+|- ||........+...|++
T Consensus 121 A-Pl~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 121 A-PLEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred C-cHHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence 4 788999999999987 88877777777777755
No 369
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=94.80 E-value=0.017 Score=39.52 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=26.1
Q ss_pred ccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|++|++ .-.|-.|+|..| +|||...|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 5999999 667889999999 89999999754
No 370
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.75 E-value=0.24 Score=36.65 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=34.3
Q ss_pred EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcC
Q 014225 231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 310 (428)
Q Consensus 231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 310 (428)
..|..++||+|.+....|.+ . ++.+-.+.++.+.+.. ..+. ..|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g 45 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEAI-------------------DYVK-AQG 45 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHHH-HcC
Confidence 45678999999998877763 2 4566666776553211 2222 347
Q ss_pred cCccceEEE
Q 014225 311 VQGIPCLVI 319 (428)
Q Consensus 311 v~~~P~~~l 319 (428)
..++|.+++
T Consensus 46 ~~~vP~v~~ 54 (72)
T TIGR02194 46 FRQVPVIVA 54 (72)
T ss_pred CcccCEEEE
Confidence 889999754
No 371
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=94.56 E-value=0.022 Score=39.01 Aligned_cols=30 Identities=30% Similarity=0.850 Sum_probs=25.9
Q ss_pred cccccc-CCCCceeEeccCC-CCCCccccccc
Q 014225 390 ICCDCD-EQGSGWAYQCLEC-GYEVHPKCVRA 419 (428)
Q Consensus 390 ~c~~C~-~~g~~~~~~~~~~-~~~~~~~~~~~ 419 (428)
.|++|+ ..-.|-.|+|..| +|||...|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 599999 5667899999999 89999999654
No 372
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.54 E-value=0.0068 Score=54.93 Aligned_cols=71 Identities=21% Similarity=0.387 Sum_probs=52.4
Q ss_pred EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225 229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 308 (428)
Q Consensus 229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 308 (428)
.++.|+++|||.|....|+|..++.--.+. ++.+..|.+-.+ .-+.-.
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL---------~v~va~VDvt~n-----------------------pgLsGR 89 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDL---------GVKVAKVDVTTN-----------------------PGLSGR 89 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCC---------ceeEEEEEEEec-----------------------ccccee
Confidence 688999999999999999999876544333 455555544322 345667
Q ss_pred cCcCccceEEEECCCCcEEecccc
Q 014225 309 FDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 309 ~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
|-+...||+|=+ +||......|.
T Consensus 90 F~vtaLptIYHv-kDGeFrrysga 112 (248)
T KOG0913|consen 90 FLVTALPTIYHV-KDGEFRRYSGA 112 (248)
T ss_pred eEEEecceEEEe-eccccccccCc
Confidence 889999999999 99987665544
No 373
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.53 E-value=0.17 Score=46.24 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=73.1
Q ss_pred EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCC-cEEEEEEecCCChHHHH-HHHhcCCCceeccCC-hH
Q 014225 53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-DFEVVFVSSDEDLNAFN-NYRACMPWLAVPYSD-LE 129 (428)
Q Consensus 53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-~~~ii~vs~D~~~~~~~-~~~~~~~~~~~~~~d-~~ 129 (428)
.-.+.+.+|+++||-+-..+|..|...+..|..|..++...|- ++.++.|+--.....+. ..+++.--..+|... ..
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~ 97 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDE 97 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCc
Confidence 5677888999999999999999999999999999999998874 67777776433333222 233322112233321 22
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225 130 TKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 130 ~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~ 161 (428)
....++..++-..- -++|+|+ -|++.+.
T Consensus 98 ~q~dvW~~L~G~kd-D~~iyDR---CGrL~~~ 125 (238)
T PF04592_consen 98 NQPDVWELLNGSKD-DFLIYDR---CGRLTYH 125 (238)
T ss_pred cccCHHHHhCCCcC-cEEEEec---cCcEEEE
Confidence 33678888876543 4788999 9988765
No 374
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.52 E-value=0.16 Score=37.57 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=38.1
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|..+|||+|.+....|.+ . ++.+..++++.+.. ...+.+..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 46 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence 456788999999998766653 2 35555666664421 13445556
Q ss_pred CcCccceEEEECCCCcEE
Q 014225 310 DVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~ 327 (428)
|...+|.+ ++| |+.+
T Consensus 47 g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 47 GAMTVPQV-FID--GELI 61 (72)
T ss_pred CCCCcCeE-EEC--CEEE
Confidence 88999997 454 5544
No 375
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.50 E-value=0.14 Score=38.76 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225 61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140 (428)
Q Consensus 61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 140 (428)
.+.-++.|..+||++|.+..-.|. ..| +.+..++++.+... ..+.+..+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~-------~~g--i~y~~idi~~~~~~---------------------~~~~~~~g~ 55 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLK-------EKG--YDFEEIPLGNDARG---------------------RSLRAVTGA 55 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHH-------HcC--CCcEEEECCCChHH---------------------HHHHHHHCC
Confidence 344567889999999999766664 234 44555566554320 334455678
Q ss_pred CCCceEEE
Q 014225 141 EGIPCLVV 148 (428)
Q Consensus 141 ~~~P~~~l 148 (428)
..+|.+++
T Consensus 56 ~~vP~i~i 63 (79)
T TIGR02190 56 TTVPQVFI 63 (79)
T ss_pred CCcCeEEE
Confidence 88998753
No 376
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.47 E-value=0.073 Score=45.33 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEE
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 102 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~v 102 (428)
.++++++.|+..+||+|+.+.|.+.++..++.+ +.++..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEE
Confidence 468999999999999999999999998876532 555543
No 377
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.45 E-value=0.075 Score=45.27 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 256 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 256 (428)
.++++++.|+.++||+|..+.+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 36889999999999999999999988776653
No 378
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.37 E-value=0.95 Score=37.16 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=58.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
..|.|+|-|.-.|-|.|.++-..|.+++.....- ..|..+.+|.- .+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf----------a~IylvdideV-----------------------~~ 68 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF----------AVIYLVDIDEV-----------------------PD 68 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc----------eEEEEEecchh-----------------------hh
Confidence 3588999999999999999999999999888743 44555555532 67
Q ss_pred HHHhcCcCccceEE-EECCCCcEEeccccchhhc
Q 014225 305 LTKYFDVQGIPCLV-IIGPEGKTVTKQGRNLINL 337 (428)
Q Consensus 305 ~~~~~~v~~~P~~~-lid~~G~i~~~~~~~~~~~ 337 (428)
+.+.|++...|+++ +++....-+..+.++....
T Consensus 69 ~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Ki 102 (142)
T KOG3414|consen 69 FVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKI 102 (142)
T ss_pred hhhhhcccCCceEEEEEcCceEEEeeCCCCCceE
Confidence 88889999988764 5555555555555544333
No 379
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.32 E-value=0.15 Score=43.90 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=39.9
Q ss_pred eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225 218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277 (428)
Q Consensus 218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d 277 (428)
.+.+..-.++++|+.|+...||+|..+.+.+.++.+++-+. ..+.++...+-
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~--------~~v~~~~~~~~ 55 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP--------GKVKFVFRPVP 55 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEESS
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC--------CceEEEEEEcc
Confidence 34566667789999999999999999999999999998222 25888888763
No 380
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.24 E-value=0.18 Score=43.40 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=40.0
Q ss_pred EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225 53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 104 (428)
Q Consensus 53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~ 104 (428)
.+.+..-.++++|+.|+...||+|..+.+.+.++.+++-+.| ++.++...+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 345666677999999999999999999999999999984433 488887755
No 381
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.16 Score=53.33 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=53.6
Q ss_pred CCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
.+||++|....+||.+|+-|...- .++++-+.. .+|.|.+|++.- |..+..
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------------~FV~IKVDREER--------------PDvD~~ 95 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------------NFVPVKVDREER--------------PDVDSL 95 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------------CceeeeEChhhc--------------cCHHHH
Confidence 478999999999999999876532 234444443 378888887531 111111
Q ss_pred hhHHHHhc-CcCccceEEEECCCCcEEecc
Q 014225 302 IKELTKYF-DVQGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 302 ~~~~~~~~-~v~~~P~~~lid~~G~i~~~~ 330 (428)
...+++.. |-.+.|-++++.|||+..+..
T Consensus 96 Ym~~~q~~tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 96 YMNASQAITGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred HHHHHHHhccCCCCceeEEECCCCceeeee
Confidence 23333333 446899999999999998754
No 382
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.02 E-value=0.12 Score=37.51 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=35.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|.++||++|+.....|.+. + +.+..++++.+.+ ....+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE--------------------LREELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 4678899999999987776643 2 4455555555432 114555556667888
Q ss_pred eEE
Q 014225 145 CLV 147 (428)
Q Consensus 145 ~~~ 147 (428)
+++
T Consensus 53 ~~~ 55 (72)
T cd02066 53 QIF 55 (72)
T ss_pred EEE
Confidence 664
No 383
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=93.92 E-value=0.024 Score=53.96 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=29.7
Q ss_pred CcccccccC-CCCceeEeccCC-CCCCcccccccc
Q 014225 388 PFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 420 (428)
Q Consensus 388 ~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~~ 420 (428)
.-.||.|++ .-.|=.|+|..| +|||+..|-.+.
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 368999999 889999999999 899999998664
No 384
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=93.89 E-value=0.16 Score=45.82 Aligned_cols=99 Identities=21% Similarity=0.401 Sum_probs=69.7
Q ss_pred cccCCCCEEecccC-CCC--EEEEEEe-----cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 46 LLNQHGTQVKVSDL-EGK--VTALYFS-----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 46 l~~~~G~~v~l~~~-~gk--~vlv~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
+...+|+ ++|.++ .|+ .++-.|- ...|+.|...+-.+.....-+..++ +.++.||...- +.+.+|.+.
T Consensus 51 F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSraP~-~~i~afk~r 126 (211)
T PF05988_consen 51 FDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRAPL-EKIEAFKRR 126 (211)
T ss_pred EeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCCCH-HHHHHHHHh
Confidence 6677886 999876 666 4555554 5789999999999987777888776 88888866444 558899999
Q ss_pred CCCceecc-CChHHHHHHHhhcCC-----CCCceEEEEcC
Q 014225 118 MPWLAVPY-SDLETKKALNRKFDI-----EGIPCLVVLQP 151 (428)
Q Consensus 118 ~~~~~~~~-~d~~~~~~l~~~~~v-----~~~P~~~lid~ 151 (428)
|+|. +|. +..+ ......|++ ...|.+-++-+
T Consensus 127 mGW~-~pw~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~R 163 (211)
T PF05988_consen 127 MGWT-FPWYSSYG--SDFNYDFGVSFDEGGEMPGLSVFLR 163 (211)
T ss_pred cCCC-ceEEEcCC--CcccccccceeccCCCceeEEEEEE
Confidence 9997 443 2222 445555666 45676665555
No 385
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.82 E-value=0.13 Score=48.64 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
++..|||.||-+.++.|..+...|..++.+|.. +.++-|..... . +...|.
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~-~~~~f~ 195 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------P-ASENFP 195 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------C-TTTTS-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------C-cccCCc
Confidence 356899999999999999999999999999977 55666644221 1 334588
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
...+|+++++. +|.++..
T Consensus 196 ~~~LPtllvYk----~G~l~~~ 213 (265)
T PF02114_consen 196 DKNLPTLLVYK----NGDLIGN 213 (265)
T ss_dssp TTC-SEEEEEE----TTEEEEE
T ss_pred ccCCCEEEEEE----CCEEEEe
Confidence 89999999999 7877755
No 386
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.78 E-value=0.12 Score=38.91 Aligned_cols=56 Identities=13% Similarity=0.307 Sum_probs=35.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
+..|+.+|||+|......|++ .+ +.+-.++++.+.+. ...+.+..+..++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~--------------------~~~~~~~~g~~~vP 51 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPAL--------------------RDEMMQRSGRRTVP 51 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHH--------------------HHHHHHHhCCCCcC
Confidence 356889999999997776653 34 44444455544331 14455556778889
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+ +++
T Consensus 52 ~i-~i~ 56 (79)
T TIGR02181 52 QI-FIG 56 (79)
T ss_pred EE-EEC
Confidence 86 444
No 387
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.039 Score=49.83 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=49.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+++.+++.||+.||.+|..+...+..+.+.++. +.++.+..| ....+...+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~----~~~~k~~a~------------------------~~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN----AQFLKLEAE------------------------EFPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh----heeeeehhh------------------------hhhHHHHHHH
Confidence 788999999999999999998888888888722 445544222 2278888999
Q ss_pred CCCCceEEEEc
Q 014225 140 IEGIPCLVVLQ 150 (428)
Q Consensus 140 v~~~P~~~lid 150 (428)
+.+.|.+.++-
T Consensus 68 v~~vp~~~~~~ 78 (227)
T KOG0911|consen 68 VEAVPYFVFFF 78 (227)
T ss_pred HhcCceeeeee
Confidence 99999988885
No 388
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=93.71 E-value=0.046 Score=37.94 Aligned_cols=36 Identities=31% Similarity=0.619 Sum_probs=28.9
Q ss_pred CCCcccccccCCC---CceeEeccCCCCCCccccccccC
Q 014225 386 GGPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD 421 (428)
Q Consensus 386 ~~~~~c~~C~~~g---~~~~~~~~~~~~~~~~~~~~~~~ 421 (428)
..+-.|+.|++.- ..-.|+|..|++-+|.+|...+.
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 5678999999966 55799999999999999997654
No 389
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.70 E-value=0.2 Score=37.19 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=23.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 108 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~ 108 (428)
++.|..+|||+|......|++ .+ +.+..++++.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~ 36 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDP 36 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCH
Confidence 467889999999997666653 34 555556666553
No 390
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.61 E-value=0.26 Score=43.58 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
+...||+-||-+.-..|+-+-.+|+.|++++-+ ..++-|+.... .-
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----------TrFikvnae~~-----------------------PF 128 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----------TRFIKVNAEKA-----------------------PF 128 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-----------ceEEEEecccC-----------------------ce
Confidence 456799999999888999999999999988754 36777766533 45
Q ss_pred HHHhcCcCccceEEEECCCCcEEecccc
Q 014225 305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~ 332 (428)
+...++|+.+|++.++ ++|+.+.+..|
T Consensus 129 lv~kL~IkVLP~v~l~-k~g~~~D~iVG 155 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALF-KNGKTVDYVVG 155 (211)
T ss_pred eeeeeeeeEeeeEEEE-EcCEEEEEEee
Confidence 6788999999999999 99988876444
No 391
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.29 E-value=0.24 Score=36.67 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=35.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|..+||+.|++..-.|++ .| +.+..++++.+.+. ...+.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~--------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER--------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH--------------------HHHHHHHhCCCCcC
Confidence 456788999999997665553 44 55556666655431 14555555667778
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+ +++
T Consensus 54 ~v-~i~ 58 (73)
T cd03027 54 QI-FFN 58 (73)
T ss_pred EE-EEC
Confidence 76 444
No 392
>PRK10638 glutaredoxin 3; Provisional
Probab=93.27 E-value=0.4 Score=36.55 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=38.7
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
+..|..+|||+|.+....|.+. ++.+..+.++.+.+. ..++.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------------gi~y~~~dv~~~~~~-------------------~~~l~~~~ 48 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------------GVSFQEIPIDGDAAK-------------------REEMIKRS 48 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence 4466789999999987777642 344455566644321 13455556
Q ss_pred CcCccceEEEECCCCcEEe
Q 014225 310 DVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~~ 328 (428)
|...+|++++ +|+.+.
T Consensus 49 g~~~vP~i~~---~g~~ig 64 (83)
T PRK10638 49 GRTTVPQIFI---DAQHIG 64 (83)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 8889998754 466653
No 393
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=92.99 E-value=0.041 Score=36.10 Aligned_cols=31 Identities=19% Similarity=0.730 Sum_probs=26.1
Q ss_pred cccccccCCCCceeEeccCC-CCCCcccccccc
Q 014225 389 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 420 (428)
Q Consensus 389 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~~ 420 (428)
|-|+.|... .|-.|+|..| +|||...|-...
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~~ 32 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNTK 32 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCCC
Confidence 569999884 4699999999 899999998653
No 394
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.94 E-value=0.31 Score=36.07 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
+..|..+|||+|......|.+ . ++.+-.++++.+.+.. .++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPALR-------------------EEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHHH-------------------HHHHHHh
Confidence 456788999999998777764 2 3555566666553221 3344455
Q ss_pred CcC-ccceEEEECCCCcEE
Q 014225 310 DVQ-GIPCLVIIGPEGKTV 327 (428)
Q Consensus 310 ~v~-~~P~~~lid~~G~i~ 327 (428)
+.. ++|.++ + +|+.+
T Consensus 47 ~~~~~vP~v~-i--~g~~i 62 (75)
T cd03418 47 GGRRTVPQIF-I--GDVHI 62 (75)
T ss_pred CCCCccCEEE-E--CCEEE
Confidence 666 899774 4 34444
No 395
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.83 E-value=0.44 Score=35.13 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=35.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|..+|||+|.+..-.|.+ .+ +.+..++++.+.. ...+.+..|...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT---------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh---------------------HHHHHHHhCCCCcC
Confidence 567889999999997655553 34 4455555554421 03444556778899
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+ +++
T Consensus 53 ~i-fi~ 57 (72)
T cd03029 53 QV-FID 57 (72)
T ss_pred eE-EEC
Confidence 86 455
No 396
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.67 E-value=0.24 Score=37.26 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=37.2
Q ss_pred EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcC
Q 014225 231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 310 (428)
Q Consensus 231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 310 (428)
..|+.+|||+|......|.+. ++.+-.++++.+.+. ..++.+..|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK----------------GVTFTEIRVDGDPAL-------------------RDEMMQRSG 46 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc----------------CCCcEEEEecCCHHH-------------------HHHHHHHhC
Confidence 467889999999988877642 244444555544321 134455567
Q ss_pred cCccceEEEECCCCcEE
Q 014225 311 VQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 311 v~~~P~~~lid~~G~i~ 327 (428)
..++|+++ + +|+.+
T Consensus 47 ~~~vP~i~-i--~g~~i 60 (79)
T TIGR02181 47 RRTVPQIF-I--GDVHV 60 (79)
T ss_pred CCCcCEEE-E--CCEEE
Confidence 88999974 4 35544
No 397
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.64 E-value=0.69 Score=37.09 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+.++++|+=.++.||...+....+++.++...+. +.+..+.+-. ..+....+++.||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~--------------------~R~vSn~IAe~~~ 74 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIE--------------------YRPVSNAIAEDFG 74 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGG--------------------GHHHHHHHHHHHT
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEe--------------------CchhHHHHHHHhC
Confidence 4689999999999999999999999888887653 5555554322 2333489999999
Q ss_pred CCC-CceEEEEcCCCCCCCcccccch
Q 014225 140 IEG-IPCLVVLQPYDDKDDATLHDGV 164 (428)
Q Consensus 140 v~~-~P~~~lid~~~~dG~i~~~~~~ 164 (428)
|.. -|..++|. ||+++....-
T Consensus 75 V~HeSPQ~ili~----~g~~v~~aSH 96 (105)
T PF11009_consen 75 VKHESPQVILIK----NGKVVWHASH 96 (105)
T ss_dssp ----SSEEEEEE----TTEEEEEEEG
T ss_pred CCcCCCcEEEEE----CCEEEEECcc
Confidence 974 79999999 7988866443
No 398
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=92.60 E-value=0.07 Score=36.31 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=29.9
Q ss_pred CCcccccccCCCCc---eeEeccCCCCCCccccccccC
Q 014225 387 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 421 (428)
Q Consensus 387 ~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~~ 421 (428)
.+..|.+|++.-.+ ..|+|..|++-.|.+|...+.
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 46789999996654 999999999999999997654
No 399
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.46 E-value=0.43 Score=37.75 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=37.5
Q ss_pred cEEEEEEe----ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225 227 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 302 (428)
Q Consensus 227 k~vll~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 302 (428)
+.|+|+-. .+|||+|.+....|.++ ++.+..+.++.+.+ . .
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~-~------------------~ 56 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPE-I------------------R 56 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHH-H------------------H
Confidence 44555433 28999999887766542 24445556654432 1 1
Q ss_pred hHHHHhcCcCccceEEEECCCCcEE
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~ 327 (428)
..+.+..|...+|.+| || |+.+
T Consensus 57 ~~l~~~tg~~tvP~vf-i~--g~~i 78 (97)
T TIGR00365 57 QGIKEYSNWPTIPQLY-VK--GEFV 78 (97)
T ss_pred HHHHHHhCCCCCCEEE-EC--CEEE
Confidence 3455556778999885 53 5544
No 400
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.44 E-value=0.44 Score=37.08 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=37.8
Q ss_pred CcEEEEEEec----cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 226 GKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 226 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
+++|+|+--. +|||+|.+....|.+. ++.+-.+.++.+.+ .
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~-~------------------ 51 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEE-V------------------ 51 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHH-H------------------
Confidence 4455554332 6999999887766653 23344445544421 1
Q ss_pred hhHHHHhcCcCccceEEEECCCCcEE
Q 014225 302 IKELTKYFDVQGIPCLVIIGPEGKTV 327 (428)
Q Consensus 302 ~~~~~~~~~v~~~P~~~lid~~G~i~ 327 (428)
..++.+..|...+|.+| | +|+.+
T Consensus 52 ~~~l~~~~g~~tvP~vf-i--~g~~i 74 (90)
T cd03028 52 RQGLKEYSNWPTFPQLY-V--NGELV 74 (90)
T ss_pred HHHHHHHhCCCCCCEEE-E--CCEEE
Confidence 24556666888999985 4 35554
No 401
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.41 E-value=0.43 Score=37.15 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=35.5
Q ss_pred CCCEEEEEEec----CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225 60 EGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 135 (428)
Q Consensus 60 ~gk~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 135 (428)
+++.|+|+=-. +|||+|......|.+ .+ +.+..++++.+.+ ....+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~--i~y~~idv~~~~~--------------------~~~~l~ 56 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LG--VDFGTFDILEDEE--------------------VRQGLK 56 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cC--CCeEEEEcCCCHH--------------------HHHHHH
Confidence 44555555332 699999995554443 33 4444445544422 125666
Q ss_pred hhcCCCCCceEEEEc
Q 014225 136 RKFDIEGIPCLVVLQ 150 (428)
Q Consensus 136 ~~~~v~~~P~~~lid 150 (428)
+..|-..+|.+ +++
T Consensus 57 ~~~g~~tvP~v-fi~ 70 (90)
T cd03028 57 EYSNWPTFPQL-YVN 70 (90)
T ss_pred HHhCCCCCCEE-EEC
Confidence 66777889986 455
No 402
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.31 E-value=0.46 Score=37.59 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCEEEEEEe----cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225 61 GKVTALYFS----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 136 (428)
Q Consensus 61 gk~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 136 (428)
...|+|+-. ++|||+|.+....|.+ .| +.+..++++.+.+ ....+.+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~~--------------------~~~~l~~ 61 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CG--VPFAYVNVLEDPE--------------------IRQGIKE 61 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cC--CCEEEEECCCCHH--------------------HHHHHHH
Confidence 344555543 3899999996554443 34 4444555554432 1145555
Q ss_pred hcCCCCCceEEEEc
Q 014225 137 KFDIEGIPCLVVLQ 150 (428)
Q Consensus 137 ~~~v~~~P~~~lid 150 (428)
..|-..+|.++ |+
T Consensus 62 ~tg~~tvP~vf-i~ 74 (97)
T TIGR00365 62 YSNWPTIPQLY-VK 74 (97)
T ss_pred HhCCCCCCEEE-EC
Confidence 56777889765 44
No 403
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=92.08 E-value=1 Score=37.81 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC--ccceEEEE
Q 014225 243 KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ--GIPCLVII 320 (428)
Q Consensus 243 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~~P~~~li 320 (428)
.....|.+++++|+++ .+.+++++.+.. ..+.+.||+. .+|+++++
T Consensus 41 ~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~ 88 (130)
T cd02983 41 KYLEILKSVAEKFKKK---------PWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAI 88 (130)
T ss_pred HHHHHHHHHHHHhcCC---------cEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEE
Confidence 3677888899999865 478888887754 4488889985 49999999
Q ss_pred CCCCcEEec-cccchhhcccccCCCCChHHHHHHHHHHHHHHhcCC
Q 014225 321 GPEGKTVTK-QGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP 365 (428)
Q Consensus 321 d~~G~i~~~-~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~ 365 (428)
+.++. .+. ..+ +++. +.|.+.+++.+.+..
T Consensus 89 ~~~~~-KY~~~~~-----------~~t~---e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 89 NFRKM-KFATLKG-----------SFSE---DGINEFLRELSYGRG 119 (130)
T ss_pred ecccC-ccccccC-----------ccCH---HHHHHHHHHHHcCCc
Confidence 88765 443 111 3444 566777877777653
No 404
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.99 E-value=0.48 Score=35.07 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=39.3
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
+..|..+|||+|++....|.+ . ++.+..+.++.+.+. ..++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~ 47 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT 47 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence 456778999999998777764 2 455666677654321 24556666
Q ss_pred CcCccceEEEECCCCcEEe
Q 014225 310 DVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 310 ~v~~~P~~~lid~~G~i~~ 328 (428)
+...+|.++ +| |+.+.
T Consensus 48 g~~~vP~v~-i~--~~~iG 63 (73)
T cd03027 48 GSSVVPQIF-FN--EKLVG 63 (73)
T ss_pred CCCCcCEEE-EC--CEEEe
Confidence 778889884 43 44443
No 405
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=91.66 E-value=0.76 Score=37.37 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc
Q 014225 248 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 311 (428)
Q Consensus 248 l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 311 (428)
|.+...++.+. ++.+|.|.+. +.+..++|++... .++|+..|.+..+-+.+|.
T Consensus 2 L~~~~~~l~~~---------gv~lv~I~~g-~~~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAA---------GVKLVVIGCG-SPEGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHc---------CCeEEEEEcC-CHHHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 34455566655 7899999988 4444888886644 4677777766666555554
No 406
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.85 Score=34.67 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=15.5
Q ss_pred EEEEecCCChhhhhhHHHHH
Q 014225 65 ALYFSANWYPPCGNFTGVLV 84 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~ 84 (428)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 56778899999999665554
No 407
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.49 E-value=0.047 Score=49.61 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=50.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225 63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 142 (428)
Q Consensus 63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 142 (428)
-.++.|+|+|||.|....|.+.+.+.--.+-+ +.+..|.+-.+ .-+.-+|=+..
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n------------------------pgLsGRF~vta 94 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN------------------------PGLSGRFLVTA 94 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec------------------------cccceeeEEEe
Confidence 57889999999999999999998877655554 55555533211 34556688899
Q ss_pred CceEEEEcCCCCCCCcccc
Q 014225 143 IPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 143 ~P~~~lid~~~~dG~i~~~ 161 (428)
+|+++=+. ||....+
T Consensus 95 LptIYHvk----DGeFrry 109 (248)
T KOG0913|consen 95 LPTIYHVK----DGEFRRY 109 (248)
T ss_pred cceEEEee----ccccccc
Confidence 99999887 7865533
No 408
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.9 Score=34.54 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.9
Q ss_pred EEEEeccCChhHHhhhHHHH
Q 014225 230 GLYFSARWCIPCEKFMPKLL 249 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~ 249 (428)
+..|..++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677899999998877666
No 409
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.18 E-value=0.65 Score=35.41 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=24.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 109 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~ 109 (428)
+..|..+||++|.+..-.|. +.| +.+-.++++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~~ 38 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVPE 38 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCHH
Confidence 56788999999999666553 345 6666666665543
No 410
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.02 E-value=6.4 Score=32.78 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=51.2
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
..|+|+|-|...|-|.|.++-..|.+++++.+.- ..|..+.++.- ..
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pd 65 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PD 65 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HC
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hh
Confidence 3589999999999999999999999999888744 56666777643 55
Q ss_pred HHHhcCcCccceEEEE--CCCCcEEeccccc
Q 014225 305 LTKYFDVQGIPCLVII--GPEGKTVTKQGRN 333 (428)
Q Consensus 305 ~~~~~~v~~~P~~~li--d~~G~i~~~~~~~ 333 (428)
+.+.|.+. .|.++++ .....-+.-+.++
T Consensus 66 fn~~yel~-dP~tvmFF~rnkhm~vD~Gtgn 95 (133)
T PF02966_consen 66 FNQMYELY-DPCTVMFFFRNKHMMVDFGTGN 95 (133)
T ss_dssp CHHHTTS--SSEEEEEEETTEEEEEESSSSS
T ss_pred hhcccccC-CCeEEEEEecCeEEEEEecCCC
Confidence 67788888 7754333 3333334443333
No 411
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.84 E-value=0.28 Score=43.06 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=30.0
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhh
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN 258 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~ 258 (428)
.+++.|+.|+...||+|..+.+.+.++.+++..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~ 47 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD 47 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC
Confidence 5788999999999999999999999988887543
No 412
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=90.81 E-value=1 Score=34.24 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=41.9
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
|+.|..+.|+-|......|.++.... .+.+-.|+++.+ .++.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~------------~~~l~~vDI~~d-----------------------~~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF------------PFELEEVDIDED-----------------------PELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS------------TCEEEEEETTTT-----------------------HHHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc------------CceEEEEECCCC-----------------------HHHHHHh
Confidence 56778899999999888877654332 578889999855 5688899
Q ss_pred CcCccceEEEEC
Q 014225 310 DVQGIPCLVIIG 321 (428)
Q Consensus 310 ~v~~~P~~~lid 321 (428)
+. .+|.+.+-+
T Consensus 47 ~~-~IPVl~~~~ 57 (81)
T PF05768_consen 47 GY-RIPVLHIDG 57 (81)
T ss_dssp CT-STSEEEETT
T ss_pred cC-CCCEEEEcC
Confidence 95 799876554
No 413
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.85 Score=36.60 Aligned_cols=15 Identities=27% Similarity=0.438 Sum_probs=12.4
Q ss_pred EEEEecCCChhhhhh
Q 014225 65 ALYFSANWYPPCGNF 79 (428)
Q Consensus 65 lv~F~a~wC~~C~~~ 79 (428)
+|.|.-+||++|.+.
T Consensus 16 VVifSKs~C~~c~~~ 30 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRA 30 (104)
T ss_pred EEEEECCcCchHHHH
Confidence 456788999999993
No 414
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=90.75 E-value=0.091 Score=36.59 Aligned_cols=26 Identities=38% Similarity=0.946 Sum_probs=22.6
Q ss_pred CcccccccC---CCCceeEeccCCCCCCc
Q 014225 388 PFICCDCDE---QGSGWAYQCLECGYEVH 413 (428)
Q Consensus 388 ~~~c~~C~~---~g~~~~~~~~~~~~~~~ 413 (428)
-|+|+.|+. ..++=+.+|.+|+|.+-
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RIl 48 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRIL 48 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHHH
Confidence 599999987 56889999999999853
No 415
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.71 E-value=0.46 Score=49.70 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=54.8
Q ss_pred ccccCc---cccCCCCEEeccc--------CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225 40 SKDRDY---LLNQHGTQVKVSD--------LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 108 (428)
Q Consensus 40 ~~~pdf---l~~~~G~~v~l~~--------~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~ 108 (428)
-+...| +.+.+|....|++ +.+++-+..|..+.||+|......+++++.... ++..-.| |...
T Consensus 84 ~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~i--d~~~ 157 (517)
T PRK15317 84 HEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMI--DGAL 157 (517)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEE--Echh
Confidence 334445 4456666666652 345567889999999999988888877766522 3554444 3332
Q ss_pred HHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEE
Q 014225 109 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV 148 (428)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~l 148 (428)
. .++.+.|++.++|++++
T Consensus 158 ~----------------------~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 158 F----------------------QDEVEARNIMAVPTVFL 175 (517)
T ss_pred C----------------------HhHHHhcCCcccCEEEE
Confidence 2 77888899999998865
No 416
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.74 Score=36.93 Aligned_cols=21 Identities=24% Similarity=0.312 Sum_probs=15.3
Q ss_pred EEEEeccCChhHHhhhHHHHH
Q 014225 230 GLYFSARWCIPCEKFMPKLLS 250 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~ 250 (428)
+|.|.-+|||+|......|.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh
Confidence 466889999999985444443
No 417
>PRK10638 glutaredoxin 3; Provisional
Probab=90.50 E-value=0.66 Score=35.32 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=34.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|..+||++|++..-.|.+ .+ +....+++|.+.+ ....+.+..+...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA--------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 456778999999996665553 34 4444455654432 114455566778899
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+ +++
T Consensus 55 ~i-~~~ 59 (83)
T PRK10638 55 QI-FID 59 (83)
T ss_pred EE-EEC
Confidence 66 344
No 418
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.09 E-value=0.43 Score=41.83 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEE
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 102 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~v 102 (428)
.+++.++.|+...||+|..+.+.+.++.++++++ +.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEc
Confidence 6789999999999999999999999999988443 555443
No 419
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.64 E-value=0.99 Score=33.28 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=23.7
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225 66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 108 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~ 108 (428)
..|..++||+|+.....|++ .| +.+-.++++.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~ 35 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQP 35 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCH
Confidence 46789999999997766653 34 555556666554
No 420
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.64 E-value=2.2 Score=35.11 Aligned_cols=65 Identities=18% Similarity=0.426 Sum_probs=49.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
..|+|+|-|.-.|-|-|..+-..|...++.+.+- .+|..+.+|+. ..+.+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV------------------------~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV------------------------PDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh------------------------hhhhhhhc
Confidence 4589999999999999999999999999998663 33333334322 56667788
Q ss_pred CCCCceEEEEcC
Q 014225 140 IEGIPCLVVLQP 151 (428)
Q Consensus 140 v~~~P~~~lid~ 151 (428)
+...|++.++-.
T Consensus 75 l~~p~tvmfFfn 86 (142)
T KOG3414|consen 75 LYDPPTVMFFFN 86 (142)
T ss_pred ccCCceEEEEEc
Confidence 998998877764
No 421
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=5.6 Score=38.07 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=55.9
Q ss_pred cccCCcEEEEEEecc----CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225 222 SSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 297 (428)
Q Consensus 222 ~~~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~ 297 (428)
...++=-+++.|.|. .|.-|..+..++.-+++.+... .+. .++-++.+-.+|-+.
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~---~~~-sn~tklFF~~Vd~~e----------------- 114 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN---SPF-SNGTKLFFCMVDYDE----------------- 114 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc---CCC-CCcceEEEEEEeccc-----------------
Confidence 334444577777764 5999999999999999988765 111 233345555555332
Q ss_pred CCcchhHHHHhcCcCccceEEEECCC-CcEE
Q 014225 298 GDPTIKELTKYFDVQGIPCLVIIGPE-GKTV 327 (428)
Q Consensus 298 ~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~ 327 (428)
..++.+.++++..|+++++.|. |+..
T Consensus 115 ----~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 ----SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred ----cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 3788999999999999999665 4444
No 422
>PRK10824 glutaredoxin-4; Provisional
Probab=88.49 E-value=0.86 Score=37.30 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=16.1
Q ss_pred CCEEEEEEec----CCChhhhhhHHHHHH
Q 014225 61 GKVTALYFSA----NWYPPCGNFTGVLVD 85 (428)
Q Consensus 61 gk~vlv~F~a----~wC~~C~~~~p~l~~ 85 (428)
...|+|+--. +|||+|++....|++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 3455555443 599999996655544
No 423
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=1.9 Score=31.96 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=45.0
Q ss_pred EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh--HHHHh
Q 014225 231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKY 308 (428)
Q Consensus 231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~ 308 (428)
..|++..||-|......|.++. +..=.|.+-.+...+++|++-.. ... +-.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~----------------v~yd~VeIt~Sm~NlKrFl~lRD---------s~~~Fd~vk~ 59 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN----------------VDYDFVEITESMANLKRFLHLRD---------SRPEFDEVKS 59 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC----------------CCceeeehhhhhhhHHHHHhhhc---------cchhHHhhhh
Confidence 4688999999988777666543 23333444456677788776221 112 23456
Q ss_pred cCcCccceEEEECCCCcEEe
Q 014225 309 FDVQGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 309 ~~v~~~P~~~lid~~G~i~~ 328 (428)
+|--++|.+. . .||+++-
T Consensus 60 ~gyiGIPall-~-~d~~vVl 77 (85)
T COG4545 60 NGYIGIPALL-T-DDGKVVL 77 (85)
T ss_pred cCcccceEEE-e-CCCcEEE
Confidence 7788999874 4 6777764
No 424
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=0.61 Score=49.13 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH-HHHHH
Q 014225 59 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE-TKKAL 134 (428)
Q Consensus 59 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~-~~~~l 134 (428)
-++|||+|..-.+||..|..+..+- .++++-+.+. +|.|.+|+.+. | |.+ ....+
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------P--DvD~~Ym~~ 99 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------P--DVDSLYMNA 99 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------c--CHHHHHHHH
Confidence 3689999999999999999875221 1233333333 66666776653 1 222 12344
Q ss_pred Hhhc-CCCCCceEEEEcCCCCCCCccc
Q 014225 135 NRKF-DIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 135 ~~~~-~v~~~P~~~lid~~~~dG~i~~ 160 (428)
++.. |-.+.|.++|+.| ||+...
T Consensus 100 ~q~~tG~GGWPLtVfLTP---d~kPFf 123 (667)
T COG1331 100 SQAITGQGGWPLTVFLTP---DGKPFF 123 (667)
T ss_pred HHHhccCCCCceeEEECC---CCceee
Confidence 4443 4568999999999 998864
No 425
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.25 E-value=0.79 Score=41.37 Aligned_cols=88 Identities=20% Similarity=0.372 Sum_probs=59.2
Q ss_pred cccCCCCEEecccC-CCCE--EEEE-E----ecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 46 LLNQHGTQVKVSDL-EGKV--TALY-F----SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 46 l~~~~G~~v~l~~~-~gk~--vlv~-F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
+...+| +.+|.++ .||- ++-. + |...|+.|...+-.+.....-+...+ +.+++|+.-.. +.+..+-+.
T Consensus 57 Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRAPl-~~l~~~k~r 132 (247)
T COG4312 57 FETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRAPL-EELVAYKRR 132 (247)
T ss_pred eecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecCcH-HHHHHHHHh
Confidence 556777 5888776 6763 3333 3 34479999999998877777777765 88998876544 458888889
Q ss_pred CCCceec-cCChHHHHHHHhhcCC
Q 014225 118 MPWLAVP-YSDLETKKALNRKFDI 140 (428)
Q Consensus 118 ~~~~~~~-~~d~~~~~~l~~~~~v 140 (428)
|+|. +| ++..+ ..+-..|++
T Consensus 133 mGW~-f~w~Ss~~--s~Fn~Df~v 153 (247)
T COG4312 133 MGWQ-FPWVSSTD--SDFNRDFQV 153 (247)
T ss_pred cCCc-ceeEeccC--ccccccccc
Confidence 9997 44 32222 445555655
No 426
>PRK10824 glutaredoxin-4; Provisional
Probab=88.19 E-value=0.97 Score=37.00 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=12.8
Q ss_pred cCChhHHhhhHHHHHH
Q 014225 236 RWCIPCEKFMPKLLSI 251 (428)
Q Consensus 236 ~wC~~C~~~~~~l~~l 251 (428)
||||+|.+....|.++
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 5999999987776654
No 427
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=87.91 E-value=0.2 Score=33.76 Aligned_cols=36 Identities=31% Similarity=0.652 Sum_probs=28.9
Q ss_pred CCCcccccccCCCCc--eeEeccCCCCCCccccccccC
Q 014225 386 GGPFICCDCDEQGSG--WAYQCLECGYEVHPKCVRAVD 421 (428)
Q Consensus 386 ~~~~~c~~C~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 421 (428)
..+..|.+|++.-.+ =.|+|..|++-.|.+|...+.
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence 446789999996544 279999999999999997654
No 428
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=87.81 E-value=0.39 Score=32.15 Aligned_cols=33 Identities=21% Similarity=0.618 Sum_probs=28.7
Q ss_pred cccccccCCCCceeEeccCC-CCCCccccccccC
Q 014225 389 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD 421 (428)
Q Consensus 389 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 421 (428)
|.|..|+..-..-.|||..+ +|||.+.|=.+..
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhCcC
Confidence 57999999888999999999 5999999986643
No 429
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=87.30 E-value=3.7 Score=34.14 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=35.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 107 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~ 107 (428)
+.|+|+|-|.-.|-+.|..+-..|.+.+++.+.- ..|..|.++..
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V 63 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV 63 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc
Confidence 4699999999999999999999999999998775 55555555533
No 430
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=87.10 E-value=5.3 Score=32.79 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=51.7
Q ss_pred ccccCCcE-EEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccC
Q 014225 221 VSSLVGKT-VGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 298 (428)
Q Consensus 221 l~~~~gk~-vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~ 298 (428)
|++++++. +||.|-. ..-+.-..+...|.+....+.++ ++.++.|.-+.... ..-+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~ 62 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS 62 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence 45566643 3444432 23444556666666655666665 67777774332210 001111
Q ss_pred CcchhHHHHhcCcC-ccceEEEECCCCcEEeccc
Q 014225 299 DPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 299 ~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~~~ 331 (428)
......+.+.|++. +.-+++||++||.+..+..
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~ 96 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWP 96 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecC
Confidence 12346788888865 2347899999999988753
No 431
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.15 E-value=1.1 Score=46.81 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=51.0
Q ss_pred cccCCCCEEeccc--------CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 46 LLNQHGTQVKVSD--------LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 46 l~~~~G~~v~l~~--------~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
+.+.+|....|++ +.+++-+..|..+.||+|......+++++.... ++..-. +|....
T Consensus 94 i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~--id~~~~-------- 159 (515)
T TIGR03140 94 ILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTM--IDGALF-------- 159 (515)
T ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEE--EEchhC--------
Confidence 4566666666642 345677889999999999987776766665532 344333 333222
Q ss_pred CCCceeccCChHHHHHHHhhcCCCCCceEEE
Q 014225 118 MPWLAVPYSDLETKKALNRKFDIEGIPCLVV 148 (428)
Q Consensus 118 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~l 148 (428)
.++.+.|++.++|++++
T Consensus 160 --------------~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 160 --------------QDEVEALGIQGVPAVFL 176 (515)
T ss_pred --------------HHHHHhcCCcccCEEEE
Confidence 77889999999998875
No 432
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=85.63 E-value=6.4 Score=31.88 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=37.3
Q ss_pred HHhhhHHHHHHHHH---HHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc--cc
Q 014225 241 CEKFMPKLLSIYQK---IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG--IP 315 (428)
Q Consensus 241 C~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~P 315 (428)
-......+.+++++ ++++ +.+|.++.+.. ....+.||++. .|
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk----------i~Fv~~d~~~~-----------------------~~~~~~fgl~~~~~P 75 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA----------INFLTADGDKF-----------------------RHPLLHLGKTPADLP 75 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce----------EEEEEEechHh-----------------------hhHHHHcCCCHhHCC
Confidence 34577788888888 7754 55666655532 33788899986 89
Q ss_pred eEEEECCCCc
Q 014225 316 CLVIIGPEGK 325 (428)
Q Consensus 316 ~~~lid~~G~ 325 (428)
.+.+++.++.
T Consensus 76 ~i~i~~~~~~ 85 (111)
T cd03072 76 VIAIDSFRHM 85 (111)
T ss_pred EEEEEcchhc
Confidence 9999987663
No 433
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=85.31 E-value=4.4 Score=32.90 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc----cc
Q 014225 241 CEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IP 315 (428)
Q Consensus 241 C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~----~P 315 (428)
-......+.+++++|+ ++ +.++.++.+.. ....+.||+.. .|
T Consensus 33 ~~~~~~~~~~vAk~fk~gk----------i~Fv~~D~~~~-----------------------~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK----------LNFAVADKEDF-----------------------SHELEEFGLDFSGGEKP 79 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe----------EEEEEEcHHHH-----------------------HHHHHHcCCCcccCCCC
Confidence 3457778888888888 45 55555544422 34678899974 89
Q ss_pred eEEEECCCC
Q 014225 316 CLVIIGPEG 324 (428)
Q Consensus 316 ~~~lid~~G 324 (428)
.+.+++.++
T Consensus 80 ~~~i~~~~~ 88 (111)
T cd03073 80 VVAIRTAKG 88 (111)
T ss_pred EEEEEeCCC
Confidence 999998766
No 434
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=1.6 Score=37.09 Aligned_cols=114 Identities=16% Similarity=0.317 Sum_probs=64.6
Q ss_pred cccccccCc-cccC------CCC-EEeccc-CCCCEEEEEE-ecCCChhhhh-hHHHHHHHHHHHhcCCCcE-EEEEEec
Q 014225 37 LLASKDRDY-LLNQ------HGT-QVKVSD-LEGKVTALYF-SANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFVSS 104 (428)
Q Consensus 37 ~~g~~~pdf-l~~~------~G~-~v~l~~-~~gk~vlv~F-~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~vs~ 104 (428)
.+|++.|+- +... .|- .++..+ ++||.|+|+= =+..-|.|.. .+|.+.+++++++.+| + .|+.|++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kG--VD~I~cVSV 81 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKG--VDEIYCVSV 81 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcC--CceEEEEEe
Confidence 456666666 4433 232 244444 4787665542 2445566666 7899999999999988 4 5666777
Q ss_pred CCCh--HHHHHHHhcC-CCceeccCChHHHHHHHhhcC-----------CCCCceEEEEcCCCCCCCccc
Q 014225 105 DEDL--NAFNNYRACM-PWLAVPYSDLETKKALNRKFD-----------IEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 105 D~~~--~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~~~-----------v~~~P~~~lid~~~~dG~i~~ 160 (428)
++.. .+|.+...-. +...++..+ .++.+..| +++.-.-.++. ||.+..
T Consensus 82 ND~FVm~AWak~~g~~~~I~fi~Dg~----geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~----nGvV~~ 143 (165)
T COG0678 82 NDAFVMNAWAKSQGGEGNIKFIPDGN----GEFTKAMGMLVDKSDLGFGVRSWRYSMVVE----NGVVEK 143 (165)
T ss_pred CcHHHHHHHHHhcCCCccEEEecCCC----chhhhhcCceeecccCCcceeeeeEEEEEe----CCeEEE
Confidence 6543 3333333323 334444433 45555544 34444455666 675543
No 435
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=84.91 E-value=6.7 Score=39.00 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=33.3
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 361 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~ 361 (428)
..++..|-+..+|.+|+||..|+.+.+-.+ +.. .++|...|+++.
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLevitg------------~v~--adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEVITG------------FVT--ADELASSIEKVW 111 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEEeec------------ccc--HHHHHHHHHHHH
Confidence 556777889999999999999999887433 222 466777776653
No 436
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=83.62 E-value=5.9 Score=34.16 Aligned_cols=101 Identities=11% Similarity=0.260 Sum_probs=60.8
Q ss_pred EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHH-HhcCCCcEEEEEE-ecCCCh--------HHHHHHHhcCCCce
Q 014225 53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEE-LRNNGSDFEVVFV-SSDEDL--------NAFNNYRACMPWLA 122 (428)
Q Consensus 53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~ii~v-s~D~~~--------~~~~~~~~~~~~~~ 122 (428)
+.+...+.||+.+|...|---..=..-.|.+..+.+. |... +++...| +.|+.. .+.++--++++|..
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~ 106 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQ 106 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCCCcE
Confidence 4555678999998888876433333333555555444 4333 3665555 454321 23333344578876
Q ss_pred eccCChHHHHHHHhhcCCCCC-ceEEEEcCCCCCCCcccc
Q 014225 123 VPYSDLETKKALNRKFDIEGI-PCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 123 ~~~~d~~~~~~l~~~~~v~~~-P~~~lid~~~~dG~i~~~ 161 (428)
+-. |.+ ..+.+++++..- -+++++|+ +|++...
T Consensus 107 ~vl-D~~--G~~~~aW~L~~~~SaiiVlDK---~G~V~F~ 140 (160)
T PF09695_consen 107 FVL-DSN--GVVRKAWQLQEESSAIIVLDK---QGKVQFV 140 (160)
T ss_pred EEE-cCC--CceeccccCCCCCceEEEEcC---CccEEEE
Confidence 554 544 577888887643 56889999 9988755
No 437
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.61 E-value=2.3 Score=43.09 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 108 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~ 108 (428)
++.|..+|||+|.+....|.+ .| +..-.|++|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g--i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND--IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC--CCeEEEECCCCh
Confidence 678899999999995554443 35 444455666554
No 438
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.44 E-value=2.3 Score=43.11 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=16.9
Q ss_pred EEEEeccCChhHHhhhHHHHH
Q 014225 230 GLYFSARWCIPCEKFMPKLLS 250 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~ 250 (428)
|+.|..+|||+|.+....|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 567889999999988776664
No 439
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.34 E-value=1.2 Score=40.47 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.4
Q ss_pred cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHh
Q 014225 224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQ 257 (428)
Q Consensus 224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~ 257 (428)
..|++.|+.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 3578889999999999999998866 666666653
No 440
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.96 E-value=3.8 Score=35.08 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=61.0
Q ss_pred eecccc-cCCcEEEEEEec--cCChh-HHhhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEEcCCCHHHHHHHHhcCCc
Q 014225 218 KVPVSS-LVGKTVGLYFSA--RWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW 292 (428)
Q Consensus 218 ~v~l~~-~~gk~vll~F~a--~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~is~d~~~~~~~~~~~~~~~ 292 (428)
++.+++ ++||.++| |.. ...|. |+...|-+.+-.++++.+ ++ +|+-||+| ++=..+++.+.++-
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksK---------GVd~iicvSVn-DpFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSK---------GVDEIICVSVN-DPFVMKAWAKSLGA 102 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhc---------CCcEEEEEecC-cHHHHHHHHhhcCc
Confidence 577777 46766655 443 34566 667999999999999987 44 46777887 44334444443331
Q ss_pred -cccccCCcchhHHHHhcCc-----------CccceEEEECCCCcEEecc
Q 014225 293 -LALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 330 (428)
Q Consensus 293 -~~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 330 (428)
-.+-+..|...++.+.+|+ ++-....++ .||++...+
T Consensus 103 ~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 103 NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 1233444444555544443 344445666 889888765
No 441
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.65 E-value=1.3 Score=40.19 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEE
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFV 102 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~v 102 (428)
.|++.++.|+.-.||+|..+.+.+ ..+.+.+.+. +.++.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKY 78 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEe
Confidence 578889999999999999998866 6777777543 445543
No 442
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.54 E-value=4.5 Score=34.70 Aligned_cols=63 Identities=24% Similarity=0.480 Sum_probs=40.6
Q ss_pred EEecccC-CCCEEEEE-EecCCChh-hhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225 53 QVKVSDL-EGKVTALY-FSANWYPP-CGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117 (428)
Q Consensus 53 ~v~l~~~-~gk~vlv~-F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~ 117 (428)
+++++++ +||-++|+ .=+..-|. |+...|-+.+-+++++.+|.+ +|+.|++|+.- .++++.+.
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd-~iicvSVnDpF-v~~aW~k~ 99 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD-EIICVSVNDPF-VMKAWAKS 99 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCc-EEEEEecCcHH-HHHHHHhh
Confidence 7888876 78665554 21222333 688899999999999998822 56667776543 23444433
No 443
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=80.63 E-value=31 Score=33.74 Aligned_cols=89 Identities=13% Similarity=0.256 Sum_probs=54.5
Q ss_pred cEEEEEEeccCCh--hHHhhh---HHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225 227 KTVGLYFSARWCI--PCEKFM---PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 301 (428)
Q Consensus 227 k~vll~F~a~wC~--~C~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 301 (428)
+.++|+|+.+--. ..++.. -.+-+|..+.-.. .++.+..|++..+
T Consensus 52 d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--------~gigfg~VD~~Kd---------------------- 101 (383)
T PF01216_consen 52 DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--------KGIGFGMVDSKKD---------------------- 101 (383)
T ss_dssp SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--------CTEEEEEEETTTT----------------------
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--------cCcceEEeccHHH----------------------
Confidence 5778888876422 222221 2223344443222 3788888887765
Q ss_pred hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225 302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 362 (428)
Q Consensus 302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 362 (428)
..+++++|+...++++++ ++|+++..+|.. + .+-|...|..++.
T Consensus 102 -~klAKKLgv~E~~SiyVf-kd~~~IEydG~~------------s---aDtLVeFl~dl~e 145 (383)
T PF01216_consen 102 -AKLAKKLGVEEEGSIYVF-KDGEVIEYDGER------------S---ADTLVEFLLDLLE 145 (383)
T ss_dssp -HHHHHHHT--STTEEEEE-ETTEEEEE-S--------------S---HHHHHHHHHHHHS
T ss_pred -HHHHHhcCccccCcEEEE-ECCcEEEecCcc------------C---HHHHHHHHHHhcc
Confidence 789999999999999999 999999886532 2 2556777776665
No 444
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=80.25 E-value=2.9 Score=37.16 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=54.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+..-|++.||-+.-..|+-+-..|+.+++.+-+ ..+|-|++... .-++.+++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~------------------------PFlv~kL~ 134 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA------------------------PFLVTKLN 134 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC------------------------ceeeeeee
Confidence 567899999999999999999999999998755 34666544322 44667799
Q ss_pred CCCCceEEEEcCCCCCCCcccc
Q 014225 140 IEGIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 140 v~~~P~~~lid~~~~dG~i~~~ 161 (428)
|..+|++.++. ||..+.+
T Consensus 135 IkVLP~v~l~k----~g~~~D~ 152 (211)
T KOG1672|consen 135 IKVLPTVALFK----NGKTVDY 152 (211)
T ss_pred eeEeeeEEEEE----cCEEEEE
Confidence 99999999998 6866543
No 445
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=80.12 E-value=18 Score=30.95 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=11.0
Q ss_pred CChhHHhhhHHHHH
Q 014225 237 WCIPCEKFMPKLLS 250 (428)
Q Consensus 237 wC~~C~~~~~~l~~ 250 (428)
+||+|.+....|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999887766654
No 446
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=78.98 E-value=1.6 Score=29.33 Aligned_cols=22 Identities=27% Similarity=0.797 Sum_probs=17.3
Q ss_pred cccccccCCC-----CceeEeccCCCC
Q 014225 389 FICCDCDEQG-----SGWAYQCLECGY 410 (428)
Q Consensus 389 ~~c~~C~~~g-----~~~~~~~~~~~~ 410 (428)
+.||+|+... ..-.|+|+.|.+
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 7899999643 347899999975
No 447
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.96 E-value=3.4 Score=36.52 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=47.0
Q ss_pred ccCCCCEEecccC--CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 014225 47 LNQHGTQVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103 (428)
Q Consensus 47 ~~~~G~~v~l~~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs 103 (428)
.+..|++|+++++ +.+.|+....-+.|--|+.+...|..+..-+...| +.+++|.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 5789999999988 44677777889999999999999999988888877 8888874
No 448
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=78.66 E-value=2 Score=34.63 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.7
Q ss_pred hHHHHhcCcCccceEEEECCCCcEEec
Q 014225 303 KELTKYFDVQGIPCLVIIGPEGKTVTK 329 (428)
Q Consensus 303 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 329 (428)
..+...||+...|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 789999999999999999 99988765
No 449
>PHA00626 hypothetical protein
Probab=76.61 E-value=1.9 Score=29.98 Aligned_cols=23 Identities=35% Similarity=0.855 Sum_probs=16.5
Q ss_pred ccccccCC---------CCceeEeccCCCCCC
Q 014225 390 ICCDCDEQ---------GSGWAYQCLECGYEV 412 (428)
Q Consensus 390 ~c~~C~~~---------g~~~~~~~~~~~~~~ 412 (428)
.||.|+.. ++.=.|.|.+|+|..
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCee
Confidence 36666653 446789999999864
No 450
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=75.78 E-value=1.6 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=20.1
Q ss_pred ccccccCCCCceeEeccCCCCCC
Q 014225 390 ICCDCDEQGSGWAYQCLECGYEV 412 (428)
Q Consensus 390 ~c~~C~~~g~~~~~~~~~~~~~~ 412 (428)
.||.|...-+.=.=.|..|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58999999988888999999875
No 451
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=72.97 E-value=1 Score=33.02 Aligned_cols=27 Identities=30% Similarity=0.952 Sum_probs=16.8
Q ss_pred ccccccCCCCce---eEeccCCC--CCCccccc
Q 014225 390 ICCDCDEQGSGW---AYQCLECG--YEVHPKCV 417 (428)
Q Consensus 390 ~c~~C~~~g~~~---~~~~~~~~--~~~~~~~~ 417 (428)
.||.|+.. -.| .|||..|+ |.+++.|+
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~~~~~a~CP 34 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKDYKKEAFCP 34 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--EEEEEEE-T
T ss_pred cCCCCCCc-cEEeCCEEECccccccceecccCC
Confidence 58888885 444 68999995 77666665
No 452
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=72.47 E-value=5.3 Score=39.56 Aligned_cols=24 Identities=21% Similarity=0.696 Sum_probs=21.4
Q ss_pred CcccccccCCCCceeEeccCCC-CC
Q 014225 388 PFICCDCDEQGSGWAYQCLECG-YE 411 (428)
Q Consensus 388 ~~~c~~C~~~g~~~~~~~~~~~-~~ 411 (428)
.+.|.+|+-.-..|.++|..|+ |+
T Consensus 354 ~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 354 RYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CEECCCCCCCCccceeECcCCCCcc
Confidence 4789999999999999999994 55
No 453
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=72.27 E-value=17 Score=31.59 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=45.4
Q ss_pred CCE-EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225 61 GKV-TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 139 (428)
Q Consensus 61 gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 139 (428)
+++ +++.|..............|+.++++++++ +.++.+..+.. ..+.+.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~------------------------~~~~~~~~ 146 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF------------------------PRLLKYFG 146 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT------------------------HHHHHHTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh------------------------HHHHHHcC
Confidence 444 777776666667777778888888888765 56665544311 56777888
Q ss_pred CC--CCceEEEEcC
Q 014225 140 IE--GIPCLVVLQP 151 (428)
Q Consensus 140 v~--~~P~~~lid~ 151 (428)
+. .+|++++++.
T Consensus 147 i~~~~~P~~vi~~~ 160 (184)
T PF13848_consen 147 IDEDDLPALVIFDS 160 (184)
T ss_dssp TTTSSSSEEEEEET
T ss_pred CCCccCCEEEEEEC
Confidence 87 8999999996
No 454
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=72.16 E-value=22 Score=25.69 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=34.6
Q ss_pred EEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc
Q 014225 232 YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 311 (428)
Q Consensus 232 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 311 (428)
.|+.+|||+|.+..-.|.+. +-.++++-++.... ..++.+....
T Consensus 3 ly~~~~~p~~~rv~~~L~~~--------------gl~~e~~~v~~~~~----------------------~~~~~~~np~ 46 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA--------------GITVELREVELKNK----------------------PAEMLAASPK 46 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc--------------CCCcEEEEeCCCCC----------------------CHHHHHHCCC
Confidence 45678999998876555432 12466666554322 1344444556
Q ss_pred CccceEEEECCCCcEEe
Q 014225 312 QGIPCLVIIGPEGKTVT 328 (428)
Q Consensus 312 ~~~P~~~lid~~G~i~~ 328 (428)
..+|++. +.+|..+.
T Consensus 47 ~~vP~L~--~~~g~~l~ 61 (71)
T cd03060 47 GTVPVLV--LGNGTVIE 61 (71)
T ss_pred CCCCEEE--ECCCcEEe
Confidence 7888873 34566554
No 455
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=70.81 E-value=11 Score=28.37 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=39.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 144 (428)
++.|..+.|+-|......|.++... .+ +++-.|+++.+ ..+.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~--~~l~~vDI~~d------------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FP--FELEEVDIDED------------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---ST--CEEEEEETTTT------------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cC--ceEEEEECCCC------------------------HHHHHHhcC-CCC
Confidence 6788999999999987777664333 22 78888887744 457778885 689
Q ss_pred eEEEEc
Q 014225 145 CLVVLQ 150 (428)
Q Consensus 145 ~~~lid 150 (428)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 866655
No 456
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=70.73 E-value=1.5 Score=46.31 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=27.3
Q ss_pred CcccccccC-CCCceeEeccCC-CCCCccccc
Q 014225 388 PFICCDCDE-QGSGWAYQCLEC-GYEVHPKCV 417 (428)
Q Consensus 388 ~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~ 417 (428)
.-.|.+|++ ...|..|+|-.| ||||+..|-
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF 634 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCF 634 (966)
T ss_pred hhhcchhhhCccceeeeeehhhcChhHHhhHh
Confidence 678999999 668999999999 999999995
No 457
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=17 Score=27.06 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=45.4
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCce
Q 014225 66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 145 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 145 (428)
+.|++..||.|.....+|.++ + +..=+|.+-.+...+++|++-.. +.+. -.-.+.+|--+||.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~--v~yd~VeIt~Sm~NlKrFl~lRD------s~~~--Fd~vk~~gyiGIPa 67 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------N--VDYDFVEITESMANLKRFLHLRD------SRPE--FDEVKSNGYIGIPA 67 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------C--CCceeeehhhhhhhHHHHHhhhc------cchh--HHhhhhcCcccceE
Confidence 568999999999877666543 2 44445556666677788876322 0111 23346678889997
Q ss_pred EEEEcCCCCCCCcc
Q 014225 146 LVVLQPYDDKDDAT 159 (428)
Q Consensus 146 ~~lid~~~~dG~i~ 159 (428)
+.+ + ||+++
T Consensus 68 ll~-~----d~~vV 76 (85)
T COG4545 68 LLT-D----DGKVV 76 (85)
T ss_pred EEe-C----CCcEE
Confidence 654 3 46554
No 458
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=66.85 E-value=1.1 Score=45.78 Aligned_cols=38 Identities=26% Similarity=0.651 Sum_probs=31.0
Q ss_pred CCCCcccccccCCCCce---eEeccCCCCCCccccccccCC
Q 014225 385 GGGPFICCDCDEQGSGW---AYQCLECGYEVHPKCVRAVDR 422 (428)
Q Consensus 385 ~~~~~~c~~C~~~g~~~---~~~~~~~~~~~~~~~~~~~~~ 422 (428)
...+-+|-+|+++-.|. --+|++|.|..|.+||+++-.
T Consensus 275 Y~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~ 315 (888)
T KOG4236|consen 275 YTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPN 315 (888)
T ss_pred ccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhccc
Confidence 44588999999976553 468999999999999998644
No 459
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=66.74 E-value=15 Score=30.72 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC--CCceEEEEcC
Q 014225 78 NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLVVLQP 151 (428)
Q Consensus 78 ~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~lid~ 151 (428)
.....|.+++++|++++ +.++.++.+.. ..+.+.||+. .+|++++++.
T Consensus 41 ~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~------------------------~~~~~~fgl~~~~~P~v~i~~~ 90 (130)
T cd02983 41 KYLEILKSVAEKFKKKP--WGWLWTEAGAQ------------------------LDLEEALNIGGFGYPAMVAINF 90 (130)
T ss_pred HHHHHHHHHHHHhcCCc--EEEEEEeCccc------------------------HHHHHHcCCCccCCCEEEEEec
Confidence 34688999999998875 66666644332 4577888985 4999999997
No 460
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=66.68 E-value=22 Score=33.43 Aligned_cols=120 Identities=14% Similarity=0.222 Sum_probs=66.0
Q ss_pred ccccccccccCc-cccCCCCEEeccc-CCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhc-CCCcEEEEEEecCCChH
Q 014225 34 FSSLLASKDRDY-LLNQHGTQVKVSD-LEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDEDLN 109 (428)
Q Consensus 34 ~~~~~g~~~pdf-l~~~~G~~v~l~~-~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~ii~vs~D~~~~ 109 (428)
+..--+...|+| ..+++|+.+++.+ ++||+.+|..+ ..|=..|...- .....+.|.. .+..++++-|++-++.
T Consensus 93 ~~~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw--~~p~~~~~~~~~~~~~q~v~In~~e~~- 169 (252)
T PF05176_consen 93 FKADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSW--TSPFLEDFLQEPYGRVQIVEINLIENW- 169 (252)
T ss_pred CcHHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHH--hhHHHHHHhhCCCCceEEEEEecchHH-
Confidence 333445667888 7889999888865 58996554444 33332222211 1112233322 2125999999875543
Q ss_pred HHHHHHh-----c----CC---C--ceeccCChHHHHHHHhhcCCCC--CceEEEEcCCCCCCCcccc
Q 014225 110 AFNNYRA-----C----MP---W--LAVPYSDLETKKALNRKFDIEG--IPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 110 ~~~~~~~-----~----~~---~--~~~~~~d~~~~~~l~~~~~v~~--~P~~~lid~~~~dG~i~~~ 161 (428)
++.++. . .+ | +++...+ .....+.+.+++.. +..++|||. +|+|.-.
T Consensus 170 -~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~-~~~~~iRe~Lgi~N~~~GYvyLVD~---~grIRWa 232 (252)
T PF05176_consen 170 -LKSWLVKLFMGSLRKSIPEERHDRYFIVYRG-QLSDDIREALGINNSYVGYVYLVDP---NGRIRWA 232 (252)
T ss_pred -HHHHHHHHHhhhhhccCCHHHCceEEEEeCC-cccHHHHHHhCCCCCCcCeEEEECC---CCeEEeC
Confidence 122221 1 11 2 2222211 12268888888854 567889999 9988743
No 461
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.56 E-value=28 Score=36.34 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=27.2
Q ss_pred CEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCC
Q 014225 268 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 324 (428)
Q Consensus 268 ~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G 324 (428)
+..+|..|.-.+.+.+...... ++.+ -.+.+.++-...|.+.++|-..
T Consensus 129 ~~~vil~SATPsles~~~~~~g--~~~~-------~~l~~r~~~~~~p~v~vid~~~ 176 (505)
T TIGR00595 129 NCPVVLGSATPSLESYHNAKQK--AYRL-------LVLTRRVSGRKPPEVKLIDMRK 176 (505)
T ss_pred CCCEEEEeCCCCHHHHHHHhcC--CeEE-------eechhhhcCCCCCeEEEEeccc
Confidence 5678888877777666554332 1111 1223334445678888887543
No 462
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=64.93 E-value=6.8 Score=35.05 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=52.3
Q ss_pred HHHhhhcCCC-ccccccccccccccccccccccCccccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHH
Q 014225 12 EQLMTTNGSS-ISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEEL 90 (428)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~pdfl~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~ 90 (428)
+.++..|..+ +.+-+....-+++.++.--..|||+. +|+.. -+|-.|+|..|...-|-|.-....|+.++.+|
T Consensus 67 erfLE~YR~kRl~E~r~~~~k~kfG~V~~ISg~dyv~-----EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf 140 (240)
T KOG3170|consen 67 ERFLEMYRIKRLAEWRATAEKAKFGEVFPISGPDYVK-----EVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF 140 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceeeccchHHHH-----HHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC
Confidence 3455555443 44555566666777766666677721 11111 12678999999999999999999999999999
Q ss_pred hcC
Q 014225 91 RNN 93 (428)
Q Consensus 91 ~~~ 93 (428)
...
T Consensus 141 p~i 143 (240)
T KOG3170|consen 141 PQI 143 (240)
T ss_pred Ccc
Confidence 763
No 463
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=64.88 E-value=2.5 Score=40.65 Aligned_cols=70 Identities=20% Similarity=0.388 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCCc-cccccccceeeeeccCCCCCcccccccC-CCCceeEeccCC-CCCCccccccccC
Q 014225 350 LEFLEKQMEEEAKNLPRSE-FHIGHRHELNLVSEGTGGGPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAVD 421 (428)
Q Consensus 350 ~~~L~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~~~ 421 (428)
-.+|...+..++...++.- .....-|-+.-+ ...+-+..|.+|.. .-.|..|+|..| +|-+++.|-.---
T Consensus 203 Kv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v--~nv~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~ 275 (434)
T KOG4301|consen 203 KVELNQFLDTLMSDPPPQCLVWLPLMHRLATV--ENVFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGH 275 (434)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhh--cccCCCccCcceecccccchhhhHhhcCCccccchhhcccc
Confidence 3455666666665554432 111111222211 14556889999987 568899999999 8999999976533
No 464
>PHA03075 glutaredoxin-like protein; Provisional
Probab=64.69 E-value=7.3 Score=31.59 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=25.3
Q ss_pred cEEEEEEeccCChhHHhhhHHHHHHHHHHH
Q 014225 227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIK 256 (428)
Q Consensus 227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 256 (428)
|.+++.|.-|.|+.|......|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999998888877777664
No 465
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=63.74 E-value=51 Score=29.69 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=50.7
Q ss_pred CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 305 (428)
Q Consensus 226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 305 (428)
|-+|+|-.|...-|-|.-....|++++-+|.+ +++|-|....-
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-----------iKFVki~at~c-------------------------- 153 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-----------IKFVKIPATTC-------------------------- 153 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-----------ceEEecccccc--------------------------
Confidence 77899999999999999999999999999874 46666543211
Q ss_pred HHhcCcCccceEEEECCCCcEEeccc
Q 014225 306 TKYFDVQGIPCLVIIGPEGKTVTKQG 331 (428)
Q Consensus 306 ~~~~~v~~~P~~~lid~~G~i~~~~~ 331 (428)
...|--...||++|. -.|-+.....
T Consensus 154 IpNYPe~nlPTl~VY-~~G~lk~q~i 178 (240)
T KOG3170|consen 154 IPNYPESNLPTLLVY-HHGALKKQMI 178 (240)
T ss_pred cCCCcccCCCeEEEe-ecchHHhhee
Confidence 112334678999999 7787776643
No 466
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=62.19 E-value=40 Score=27.23 Aligned_cols=48 Identities=8% Similarity=0.204 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHh-cCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC----CceEEEEcC
Q 014225 77 GNFTGVLVDVYEELR-NNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG----IPCLVVLQP 151 (428)
Q Consensus 77 ~~~~p~l~~l~~~~~-~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~P~~~lid~ 151 (428)
......+.+++++++ ++ +.++. +|.+.. ..+.+.||+.. .|.+.+++.
T Consensus 34 ~~~~~~~~~vAk~fk~gk---i~Fv~--~D~~~~----------------------~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK---LNFAV--ADKEDF----------------------SHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHCcCCe---EEEEE--EcHHHH----------------------HHHHHHcCCCcccCCCCEEEEEeC
Confidence 456788888899988 44 44444 333322 45778888874 899999986
No 467
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=62.02 E-value=21 Score=30.57 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=17.0
Q ss_pred CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225 72 WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 108 (428)
Q Consensus 72 wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~ 108 (428)
+|++|.+....|+. .+ +.+..++++.+.
T Consensus 15 t~~~C~~ak~iL~~-------~~--V~~~e~DVs~~~ 42 (147)
T cd03031 15 TFEDCNNVRAILES-------FR--VKFDERDVSMDS 42 (147)
T ss_pred cChhHHHHHHHHHH-------CC--CcEEEEECCCCH
Confidence 89999985555443 23 445555555443
No 468
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=61.36 E-value=14 Score=32.55 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.2
Q ss_pred EEeccCChhHHhhhHHHHHHHHHHHhh
Q 014225 232 YFSARWCIPCEKFMPKLLSIYQKIKQN 258 (428)
Q Consensus 232 ~F~a~wC~~C~~~~~~l~~l~~~~~~~ 258 (428)
.|..|.|++|-...|.+.++..+|..+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 588999999999999999999999865
No 469
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.14 E-value=19 Score=33.33 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHH
Q 014225 212 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 256 (428)
Q Consensus 212 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 256 (428)
..++. .+.+.+..++++++.|+...||+|....+.+.+.+....
T Consensus 71 ~~~~~-~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGK-DVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred cCCCC-cccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 55555 566666667899999999999999888888887555543
No 470
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.63 E-value=2.1 Score=42.59 Aligned_cols=38 Identities=32% Similarity=0.642 Sum_probs=31.6
Q ss_pred CCCCCcccccccCCCCcee---EeccCCCCCCccccccccC
Q 014225 384 TGGGPFICCDCDEQGSGWA---YQCLECGYEVHPKCVRAVD 421 (428)
Q Consensus 384 ~~~~~~~c~~C~~~g~~~~---~~~~~~~~~~~~~~~~~~~ 421 (428)
+...+--|+||+.+-.|.. -.|..|+..+|.+|.+.+-
T Consensus 117 tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVP 157 (683)
T KOG0696|consen 117 TYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVP 157 (683)
T ss_pred ecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCC
Confidence 5666889999999877754 4699999999999998764
No 471
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.29 E-value=26 Score=32.17 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=26.6
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEE
Q 014225 64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 101 (428)
Q Consensus 64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~ 101 (428)
.+-.|.-.-||.|-..-+.|.++...+...- ++++..
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~-~v~i~w 43 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEV-RVEIRW 43 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcce-eEEEEe
Confidence 3344456789999999999999999987542 355554
No 472
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.15 E-value=20 Score=33.08 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=36.1
Q ss_pred ccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcC
Q 014225 47 LNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN 93 (428)
Q Consensus 47 ~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~ 93 (428)
...++..+...+..++++++.|.-.-||+|+...|.+.+.+....+.
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 34555555566666799999999999999999999998866665543
No 473
>PRK12496 hypothetical protein; Provisional
Probab=59.92 E-value=5.7 Score=34.72 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=10.6
Q ss_pred cccccccCCCCc--eeEeccCCCCCC
Q 014225 389 FICCDCDEQGSG--WAYQCLECGYEV 412 (428)
Q Consensus 389 ~~c~~C~~~g~~--~~~~~~~~~~~~ 412 (428)
+.|.+|++.=+. +.--|..|+-.|
T Consensus 128 ~~C~gC~~~~~~~~~~~~C~~CG~~~ 153 (164)
T PRK12496 128 KVCKGCKKKYPEDYPDDVCEICGSPV 153 (164)
T ss_pred EECCCCCccccCCCCCCcCCCCCChh
Confidence 455555543321 223355554443
No 474
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=58.81 E-value=40 Score=25.07 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=45.9
Q ss_pred EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH
Q 014225 228 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 307 (428)
Q Consensus 228 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 307 (428)
.++..|-+...+-+.+....+.++.+++... .+++=.|.+... .++++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~---------~~~LeVIDv~~~-----------------------P~lAe 49 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG---------PYELEVIDVLKQ-----------------------PQLAE 49 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC---------cEEEEEEEcccC-----------------------HhHHh
Confidence 3566777778888999999999998887532 455555555443 67889
Q ss_pred hcCcCccceEEEECC
Q 014225 308 YFDVQGIPCLVIIGP 322 (428)
Q Consensus 308 ~~~v~~~P~~~lid~ 322 (428)
.+++..+||++=..|
T Consensus 50 ~~~ivAtPtLvk~~P 64 (72)
T cd02978 50 EDKIVATPTLVKVLP 64 (72)
T ss_pred hCCEEEechhhhcCC
Confidence 999999999765433
No 475
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=57.67 E-value=5.6 Score=22.26 Aligned_cols=10 Identities=40% Similarity=1.291 Sum_probs=6.5
Q ss_pred EeccCCCCCC
Q 014225 403 YQCLECGYEV 412 (428)
Q Consensus 403 ~~~~~~~~~~ 412 (428)
|+|..|+|--
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 8999999853
No 476
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=57.61 E-value=17 Score=29.24 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225 83 LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 141 (428)
Q Consensus 83 l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 141 (428)
|.+...++...| +.+++|....... .++|.+...|..--+.|.+ ..+.+++++.
T Consensus 2 L~~~~~~l~~~g--v~lv~I~~g~~~~-~~~f~~~~~~p~~ly~D~~--~~lY~~lg~~ 55 (115)
T PF13911_consen 2 LSRRKPELEAAG--VKLVVIGCGSPEG-IEKFCELTGFPFPLYVDPE--RKLYKALGLK 55 (115)
T ss_pred hhHhHHHHHHcC--CeEEEEEcCCHHH-HHHHHhccCCCCcEEEeCc--HHHHHHhCCc
Confidence 455667777777 8888887765544 7777766555333333443 6666666665
No 477
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=57.51 E-value=13 Score=29.42 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=15.2
Q ss_pred EEEecCCChhhhhhHHHHHH
Q 014225 66 LYFSANWYPPCGNFTGVLVD 85 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~ 85 (428)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46789999999996655543
No 478
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=57.48 E-value=27 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.1
Q ss_pred HHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225 132 KALNRKFDIEGIPCLVVLQPYDDKDDATL 160 (428)
Q Consensus 132 ~~l~~~~~v~~~P~~~lid~~~~dG~i~~ 160 (428)
..+..+||+...|+++++. +|+.+.
T Consensus 72 ~~L~~r~gv~~~PaLvf~R----~g~~lG 96 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFFR----DGRYLG 96 (107)
T ss_dssp HHHHHHHT-TSSSEEEEEE----TTEEEE
T ss_pred HHHHHHhCCccCCeEEEEE----CCEEEE
Confidence 8999999999999999999 676653
No 479
>PHA03075 glutaredoxin-like protein; Provisional
Probab=57.00 E-value=16 Score=29.71 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.6
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHH
Q 014225 62 KVTALYFSANWYPPCGNFTGVLVDVYEEL 90 (428)
Q Consensus 62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~ 90 (428)
|.++|.|.-|.|+.|......|+++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999888887666664
No 480
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=56.04 E-value=20 Score=25.02 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=18.4
Q ss_pred CCCcccccccC--------CCCceeEeccCCCC
Q 014225 386 GGPFICCDCDE--------QGSGWAYQCLECGY 410 (428)
Q Consensus 386 ~~~~~c~~C~~--------~g~~~~~~~~~~~~ 410 (428)
..+.+|.+|.. ......|+|..|++
T Consensus 20 r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 20 RYALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred ceeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 34778888864 34558999999975
No 481
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=55.84 E-value=8.4 Score=22.92 Aligned_cols=20 Identities=25% Similarity=1.137 Sum_probs=9.2
Q ss_pred EeccCCC-------CCCccccccccCC
Q 014225 403 YQCLECG-------YEVHPKCVRAVDR 422 (428)
Q Consensus 403 ~~~~~~~-------~~~~~~~~~~~~~ 422 (428)
|.|.+|+ |.-|-.|.-+.++
T Consensus 1 ~sCiDC~~~F~~~~y~~Ht~CItE~eK 27 (28)
T PF08790_consen 1 FSCIDCSKDFDGDSYKSHTSCITEAEK 27 (28)
T ss_dssp EEETTTTEEEEGGGTTT-----S---S
T ss_pred CeeecCCCCcCcCCcCCCCcccCcccc
Confidence 6799996 7789999876653
No 482
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.92 E-value=21 Score=39.40 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=33.5
Q ss_pred CccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCCCccccccccc
Q 014225 312 QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHE 376 (428)
Q Consensus 312 ~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 376 (428)
..+|.+.++|.+|++....++ ++..-.+.+-+++|.+.|+...--+....|.|.
T Consensus 286 h~Lp~i~i~d~dG~in~~~~~-----------~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~ 339 (877)
T COG0525 286 HNLPLINIIDEDGRINEEAAG-----------EFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHS 339 (877)
T ss_pred CCCCceEEECCCCeeccCCcc-----------ccCCCcHHHHHHHHHHHHHhCCCeEeeeecccc
Confidence 367889999999999855432 223333456677777777755444444444444
No 483
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=54.56 E-value=1.3e+02 Score=25.41 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225 230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 309 (428)
Q Consensus 230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 309 (428)
++.|..|.|+=|..-+..|+ ..+|+|-.+..|+- ..+.+++
T Consensus 28 ~~vyksPnCGCC~~w~~~mk----------------~~Gf~Vk~~~~~d~-----------------------~alK~~~ 68 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK----------------ANGFEVKVVETDDF-----------------------LALKRRL 68 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH----------------hCCcEEEEeecCcH-----------------------HHHHHhc
Q ss_pred Cc---CccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCCCcccccccc
Q 014225 310 DV---QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRH 375 (428)
Q Consensus 310 ~v---~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ 375 (428)
|| ..-=.+.+| +|+.+.-+.. .+.|..++++.| ...-...+|
T Consensus 69 gIp~e~~SCHT~VI--~Gy~vEGHVP---------------------a~aI~~ll~~~p-d~~GlavPg 113 (149)
T COG3019 69 GIPYEMQSCHTAVI--NGYYVEGHVP---------------------AEAIARLLAEKP-DAKGLAVPG 113 (149)
T ss_pred CCChhhccccEEEE--cCEEEeccCC---------------------HHHHHHHHhCCC-CcceecCCC
No 484
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=53.64 E-value=28 Score=28.31 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=22.6
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225 66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 107 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~ 107 (428)
..|+.++|+.|++....|++ +| +.+..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCCC
Confidence 35789999999997665544 45 55666666544
No 485
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=52.99 E-value=93 Score=25.40 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEEecC--CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225 56 VSDLEGKVTALYFSAN--WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 133 (428)
Q Consensus 56 l~~~~gk~vlv~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 133 (428)
|+++++|--+|..+|+ .-+.=...+..|.+....+.++. +.++.+.-+...... -+. +......
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~~~-----------~~~-~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARSPG-----------KPL-SPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCcccccc-----------CcC-CHHHHHH
Confidence 5666666433334443 34445666777777777787775 777776333222100 111 3333478
Q ss_pred HHhhcCCCC-CceEEEEcCCCCCCCcccc
Q 014225 134 LNRKFDIEG-IPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 134 l~~~~~v~~-~P~~~lid~~~~dG~i~~~ 161 (428)
+.+.|++.. --+++||++ ||.+..+
T Consensus 69 lr~~l~~~~~~f~~vLiGK---DG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGK---DGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeC---CCcEEEe
Confidence 999999753 357889999 9977644
No 486
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=52.57 E-value=8 Score=27.37 Aligned_cols=24 Identities=33% Similarity=0.941 Sum_probs=13.5
Q ss_pred CCcccccccCC---------CCceeEeccCCCC
Q 014225 387 GPFICCDCDEQ---------GSGWAYQCLECGY 410 (428)
Q Consensus 387 ~~~~c~~C~~~---------g~~~~~~~~~~~~ 410 (428)
-.+.||.|++. ..+-.|.|..|+|
T Consensus 24 ~~F~CPnCG~~~I~RC~~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 24 VKFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGF 56 (59)
T ss_pred CEeeCCCCCCeeEeechhHHhcCCceECCCCCC
Confidence 35667777553 2334566666665
No 487
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=52.46 E-value=26 Score=27.98 Aligned_cols=19 Identities=5% Similarity=-0.083 Sum_probs=14.9
Q ss_pred EEEecCCChhhhhhHHHHH
Q 014225 66 LYFSANWYPPCGNFTGVLV 84 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~ 84 (428)
..|+.++|+.|++....|.
T Consensus 2 ~iy~~~~C~~crka~~~L~ 20 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE 20 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 4688999999999665554
No 488
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=52.28 E-value=13 Score=30.02 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=21.4
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225 66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 107 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~ 107 (428)
..|..++|+.|++....|++ +| +.+..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HG--VDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CceEEecccCC
Confidence 45779999999996655543 45 45555554433
No 489
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=51.91 E-value=2.4 Score=43.58 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=34.9
Q ss_pred ccccceeeeeccCCCCCcccccccCCCCcee---EeccCCCCCCccccccc
Q 014225 372 GHRHELNLVSEGTGGGPFICCDCDEQGSGWA---YQCLECGYEVHPKCVRA 419 (428)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~c~~C~~~g~~~~---~~~~~~~~~~~~~~~~~ 419 (428)
-++|.|-.- ....+--||+|++|-.|.+ -.|+-|+...|-+||-+
T Consensus 143 i~PH~l~vh---SY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k 190 (888)
T KOG4236|consen 143 IRPHTLFVH---SYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK 190 (888)
T ss_pred eecceeeee---cccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence 346776652 2334678999999988865 56999999999999977
No 490
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=51.66 E-value=31 Score=30.26 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.7
Q ss_pred EEEEEeccCChhHHhhhHHHHHHHHHHH
Q 014225 229 VGLYFSARWCIPCEKFMPKLLSIYQKIK 256 (428)
Q Consensus 229 vll~F~a~wC~~C~~~~~~l~~l~~~~~ 256 (428)
+|.+|+..-||+|-...+.|.++.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~ 28 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP 28 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 3677888999999999999999999983
No 491
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.60 E-value=55 Score=31.54 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=52.4
Q ss_pred CCCCEEEEEEecC----CChhhhhhHHHHHHHHHHHhcCCCcE---EEEEEecCCChHHHHHHHhcCCCceeccCChHHH
Q 014225 59 LEGKVTALYFSAN----WYPPCGNFTGVLVDVYEELRNNGSDF---EVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 131 (428)
Q Consensus 59 ~~gk~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~---~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 131 (428)
.++-.+++.|.|. .|.-|+.+..++.-+++.+...+++- .+.+--+|-++.
T Consensus 58 prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~---------------------- 115 (331)
T KOG2603|consen 58 PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES---------------------- 115 (331)
T ss_pred CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc----------------------
Confidence 3455678888764 69999999999999998887754322 233333443322
Q ss_pred HHHHhhcCCCCCceEEEEcC
Q 014225 132 KALNRKFDIEGIPCLVVLQP 151 (428)
Q Consensus 132 ~~l~~~~~v~~~P~~~lid~ 151 (428)
.++.+.+++++.|+++++.|
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred HHHHHHhcccCCCeEEEeCC
Confidence 88999999999999999987
No 492
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=51.00 E-value=39 Score=24.30 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=19.8
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225 67 YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 104 (428)
Q Consensus 67 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~ 104 (428)
.|+..||+.|++..-.|. ..|..++++-++.
T Consensus 3 ly~~~~~p~~~rv~~~L~-------~~gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALL-------LAGITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHH-------HcCCCcEEEEeCC
Confidence 467889999998654443 2343477766544
No 493
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=49.50 E-value=33 Score=28.60 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=26.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh---HHHHHHHhcC
Q 014225 65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL---NAFNNYRACM 118 (428)
Q Consensus 65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~---~~~~~~~~~~ 118 (428)
+..|..++|+.|++....|. ++| +.+-.+++..+. +.+.++++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~g--i~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHD--IPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcC--CCcEEeeccCChhhHHHHHHHHHHh
Confidence 45677999999999665443 345 455555554332 4445555443
No 494
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=49.07 E-value=1.8e+02 Score=29.84 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=69.6
Q ss_pred CCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH-------------------
Q 014225 49 QHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN------------------- 109 (428)
Q Consensus 49 ~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~------------------- 109 (428)
.+|+.|++++++|..-+|...++- .++...+...+...+++.+++ |-||-|..+.+.+
T Consensus 284 ~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~--VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p 360 (453)
T PLN03098 284 STNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRG--VLLIPVVWGENKDPQPKKKGFGRSSKAAASLP 360 (453)
T ss_pred cCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcC--cEEEEEecCCCCccccccccccccchhhhcCC
Confidence 357799999999976555555554 677777888888889999988 7777777653321
Q ss_pred -------------HHHHHH-hcCCCceeccCChHHHHHHHh---hcCCC-CCceEEEEcCCCCCCCcccc
Q 014225 110 -------------AFNNYR-ACMPWLAVPYSDLETKKALNR---KFDIE-GIPCLVVLQPYDDKDDATLH 161 (428)
Q Consensus 110 -------------~~~~~~-~~~~~~~~~~~d~~~~~~l~~---~~~v~-~~P~~~lid~~~~dG~i~~~ 161 (428)
..+..+ ....|...|....++..=|.+ .-|+. +-|.++.+.. ||+|...
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~---dGrVr~S 427 (453)
T PLN03098 361 SIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRL---DGRVRRS 427 (453)
T ss_pred CccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEee---CCeEecC
Confidence 011111 123587788755554333332 22332 3377889998 9999865
No 495
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=48.58 E-value=1.1e+02 Score=25.70 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.6
Q ss_pred chhHHHHhcCcCccceEEEECCC
Q 014225 301 TIKELTKYFDVQGIPCLVIIGPE 323 (428)
Q Consensus 301 ~~~~~~~~~~v~~~P~~~lid~~ 323 (428)
-+..+.++|+|+.+|++++...+
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCC
Confidence 35789999999999999999544
No 496
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=48.33 E-value=43 Score=27.08 Aligned_cols=43 Identities=5% Similarity=0.007 Sum_probs=25.7
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC---hHHHHHHHhc
Q 014225 66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED---LNAFNNYRAC 117 (428)
Q Consensus 66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~---~~~~~~~~~~ 117 (428)
..|+.++|+.|++....|++ .| +.+-.+++..+ .+.+.++++.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~g--i~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQ--IPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEecCCCcchHHHHHHHHHH
Confidence 45778999999996655543 45 55555555433 3444444443
No 497
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=47.70 E-value=3.1e+02 Score=28.14 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=63.6
Q ss_pred CCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH-H----------
Q 014225 214 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT-S---------- 282 (428)
Q Consensus 214 ~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~-~---------- 282 (428)
+|+ .+++.+++|..=+|...++- .++..-+...+...+++.+. +|-||-|..+.+.+ +
T Consensus 285 ~~~-~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r---------~VlvVPv~~~~~~~~~~~~~gfg~~s 353 (453)
T PLN03098 285 TNR-IVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKR---------GVLLIPVVWGENKDPQPKKKGFGRSS 353 (453)
T ss_pred CCC-EEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHc---------CcEEEEEecCCCCccccccccccccc
Confidence 467 89999999954333334443 45555555555556666655 78888888863321 0
Q ss_pred ---------------------HHHHH-hcCCccccccCCcchhHHHH----hcCcC-ccceEEEECCCCcEEecccc
Q 014225 283 ---------------------FESYF-GTMPWLALPFGDPTIKELTK----YFDVQ-GIPCLVIIGPEGKTVTKQGR 332 (428)
Q Consensus 283 ---------------------~~~~~-~~~~~~~~~~~~d~~~~~~~----~~~v~-~~P~~~lid~~G~i~~~~~~ 332 (428)
.+.-+ ....|...|+..+.-..... .=|+. +.|.++.+..||+|...+.+
T Consensus 354 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~G 430 (453)
T PLN03098 354 KAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRG 430 (453)
T ss_pred hhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCCC
Confidence 01111 13457777776553222221 22332 33778999999999988654
No 498
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=47.61 E-value=8.5 Score=23.68 Aligned_cols=24 Identities=33% Similarity=0.952 Sum_probs=13.3
Q ss_pred cccccccCC---CCceeEeccCCCCCC
Q 014225 389 FICCDCDEQ---GSGWAYQCLECGYEV 412 (428)
Q Consensus 389 ~~c~~C~~~---g~~~~~~~~~~~~~~ 412 (428)
|.|+.|+.. ..+=.-+|..|++.+
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence 567777652 233334777777654
No 499
>PRK09301 circadian clock protein KaiB; Provisional
Probab=47.53 E-value=69 Score=25.59 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=49.3
Q ss_pred CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225 225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 304 (428)
Q Consensus 225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 304 (428)
++.+++=.|++...|-..+....+.++.+++-.. .+++=.|.+-.. .+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g---------~y~LeVIDv~~q-----------------------Pe 51 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKG---------VYALKVIDVLKN-----------------------PQ 51 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC---------ceEEEEEEcccC-----------------------Hh
Confidence 4567777788888899999999999998876533 344444444433 67
Q ss_pred HHHhcCcCccceEEEECCC
Q 014225 305 LTKYFDVQGIPCLVIIGPE 323 (428)
Q Consensus 305 ~~~~~~v~~~P~~~lid~~ 323 (428)
+++.+.+.++||++=+-|.
T Consensus 52 lAE~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 52 LAEEDKILATPTLAKILPP 70 (103)
T ss_pred HHhHCCeEEecHHhhcCCC
Confidence 8999999999997766444
No 500
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.19 E-value=11 Score=21.21 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=13.7
Q ss_pred cccccCCCCceeEeccCCCCCC
Q 014225 391 CCDCDEQGSGWAYQCLECGYEV 412 (428)
Q Consensus 391 c~~C~~~g~~~~~~~~~~~~~~ 412 (428)
|++|+..-..=+=.|..|+.+|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 7777776555444477776554
Done!