BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014226
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3B|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3C|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
Length = 356
Score = 595 bits (1534), Expect = e-170, Method: Compositional matrix adjust.
Identities = 275/353 (77%), Positives = 317/353 (89%), Gaps = 4/353 (1%)
Query: 64 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQA 119
L DL+NL+++ T+KIIAEYIWIGG+G+D+RSK++ PV PS+LPKWNYDGSSTGQA
Sbjct: 4 LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQA 63
Query: 120 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 179
PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE
Sbjct: 64 PGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEE 123
Query: 180 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 239
PW+GIEQEYTLLQ++ WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYAG
Sbjct: 124 PWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAG 183
Query: 240 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 299
INISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GDW
Sbjct: 184 INISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDW 243
Query: 300 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDS 359
NGAG HTNYST+SMR+EGGYE IK AI L LRHKEHI+AYGEGNERRLTG+HETA I++
Sbjct: 244 NGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINT 303
Query: 360 FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 412
FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct: 304 FSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|B Chain B, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|C Chain C, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|D Chain D, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|E Chain E, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|F Chain F, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|G Chain G, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|H Chain H, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|I Chain I, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|J Chain J, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|K Chain K, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|L Chain L, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|M Chain M, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|N Chain N, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|O Chain O, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|P Chain P, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|Q Chain Q, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|R Chain R, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|S Chain S, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|T Chain T, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
Length = 370
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 240/348 (68%), Gaps = 11/348 (3%)
Query: 64 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSK----SKPVEHPSELPKWNYDGSSTGQA 119
L+ L LD +IIAEY+WI GTG ++RSK K + +LP+WN+DGSST QA
Sbjct: 12 LQKYLELD---QRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQA 67
Query: 120 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 179
PG DS++ L P A + DPFR G+NI+V+ Y G P N RH AA++F+ K E
Sbjct: 68 PGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEE 125
Query: 180 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 239
WFG+EQEYTL GWP G YP PQGPYYCG GA K + RD+ +AHY+ACLYAG
Sbjct: 126 IWFGLEQEYTLFDMYDD-VYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAG 184
Query: 240 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 299
+ ISG N EVMP QWE+QVGP GID GD +W +RY L R+ E+ G+ +S PKP++GDW
Sbjct: 185 LEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDW 244
Query: 300 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDS 359
NGAGCH N STK MR+ GG + I++AI LS RH EHI YG N+ RLTG+HETAS+ +
Sbjct: 245 NGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTA 304
Query: 360 FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETT 407
FS GVANRG SIR+ R K+G GY EDRRPASN+DPY+VT ++ ET
Sbjct: 305 FSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETV 352
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/346 (54%), Positives = 242/346 (69%), Gaps = 11/346 (3%)
Query: 74 PYTDKIIAEYIWIGGTGIDMRSKSKPVEHP----SELPKWNYDGSSTGQAPGEDSEVILY 129
P +K+ A YIWI GTG +R K++ ++ ELP+WN+DGSST Q+ G +S++ L
Sbjct: 21 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLV 80
Query: 130 PQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYT 189
P A+F+DPFR N LV C+ + +P TN RH I VS + PWFG+EQEYT
Sbjct: 81 PAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIMD--MVSNQHPWFGMEQEYT 138
Query: 190 LLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEV 249
L+ + P GWP +PGPQGPYYCG GADK++GRDI +AHY+ACLYAGI I+GTN EV
Sbjct: 139 LMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEV 197
Query: 250 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 309
MP QWE+Q+GP GID GDH+W +R++L R+ E GV+ + DPKPI G+WNGAGCHTN+S
Sbjct: 198 MPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFS 257
Query: 310 TKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWGVA 365
TK+MREE G + I+++I LS RH+ HI AY G N RRLTG HET++I+ FS GVA
Sbjct: 258 TKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVA 317
Query: 366 NRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411
NRG SIR+ R ++ KGY EDRRP++N DP+ VT L T +L E
Sbjct: 318 NRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 363
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/346 (53%), Positives = 240/346 (69%), Gaps = 11/346 (3%)
Query: 74 PYTDKIIAEYIWIGGTGIDMRSKSKPVEHP----SELPKWNYDGSSTGQAPGEDSEVILY 129
P +K+ A YIWI GTG +R K++ ++ ELP+WN+DGSST Q+ G +S++ L
Sbjct: 40 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLV 99
Query: 130 PQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYT 189
P A+F+DPFR N LV+C+ + P TN RH I VS + PWFG+EQEYT
Sbjct: 100 PAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMD--MVSNQHPWFGMEQEYT 157
Query: 190 LLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEV 249
L+ + P GWP +PGPQGPYYCG GAD+++GRDI +AHY+ACLYAG+ I+GTN EV
Sbjct: 158 LMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEV 216
Query: 250 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 309
MP QWE+Q+GP GI GDH+W +R++L R+ E GV+ + DPKPI G+WNGAGCHTN+S
Sbjct: 217 MPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFS 276
Query: 310 TKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWGVA 365
TK+MREE G + I++AI LS RH+ HI AY G N RRLTG HET++I+ FS GVA
Sbjct: 277 TKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVA 336
Query: 366 NRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411
NR SIR+ R ++ KGY EDRRP++N DP+ VT L T +L E
Sbjct: 337 NRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 382
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2WGS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WHI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|4ACF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate
Length = 486
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 50/337 (14%)
Query: 111 YDGSST-GQAPGEDSEVILYP--QAIFKDPFRGGNNILVICDTYTPAG-EPIPTNKRH-- 164
+DGSS G +S+++L P + DPFR + + + P EP + R+
Sbjct: 61 FDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIA 120
Query: 165 RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVK-----------------WPLGWPVGAYP 207
R AE + S A+ +FG E E+ + W G A
Sbjct: 121 RKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADG 180
Query: 208 GP--------QGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG-QWEYQV 258
P +G Y+ A D+ D+ D + +G + + EV G Q E
Sbjct: 181 SPNRGYKVRHKGGYFPVAPNDQYV--DLRDKMLTNLINSGFILEKGHHEVGSGGQAEINY 238
Query: 259 GPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS-----TKSM 313
+ + A D + +Y+++ Q G ++ PKP+ GD NG+G H + S M
Sbjct: 239 QFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAPLM 297
Query: 314 REEGGY----ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVAN 366
+E GY +T + I L L H + A+ + +RL +E A I+ + N
Sbjct: 298 YDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVPGYE-APIN-LVYSQRN 354
Query: 367 RGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLL 403
R +R+ LE R P S+ +PY+ S +
Sbjct: 355 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 391
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|B Chain B, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|C Chain C, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|D Chain D, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|E Chain E, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|F Chain F, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|G Chain G, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|H Chain H, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|I Chain I, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|J Chain J, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|K Chain K, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|L Chain L, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|M Chain M, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|N Chain N, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|O Chain O, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|P Chain P, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|Q Chain Q, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|R Chain R, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|S Chain S, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|T Chain T, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|U Chain U, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|V Chain V, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|W Chain W, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|X Chain X, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|A Chain A, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|B Chain B, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|C Chain C, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|D Chain D, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|E Chain E, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|F Chain F, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|G Chain G, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|H Chain H, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|I Chain I, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|J Chain J, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|K Chain K, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|L Chain L, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|M Chain M, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|N Chain N, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|O Chain O, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|P Chain P, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|Q Chain Q, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|R Chain R, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|S Chain S, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|T Chain T, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|U Chain U, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|V Chain V, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|W Chain W, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|X Chain X, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
Length = 477
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 50/337 (14%)
Query: 111 YDGSST-GQAPGEDSEVILYP--QAIFKDPFRGGNNILVICDTYTPAG-EPIPTNKRH-- 164
+DGSS G +S+++L P + DPFR + + + P EP + R+
Sbjct: 52 FDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIA 111
Query: 165 RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVK-----------------WPLGWPVGAYP 207
R AE + S A+ +FG E E+ + W G A
Sbjct: 112 RKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADG 171
Query: 208 GP--------QGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG-QWEYQV 258
P +G Y+ A D+ D+ D + +G + + EV G Q E
Sbjct: 172 SPNRGYKVRHKGGYFPVAPNDQYV--DLRDKMLTNLINSGFILEKGHHEVGSGGQAEINY 229
Query: 259 GPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS-----TKSM 313
+ + A D + +Y+++ Q G ++ PKP+ GD NG+G H + S M
Sbjct: 230 QFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAPLM 288
Query: 314 REEGGY----ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVAN 366
+E GY +T + I L L H + A+ + +RL +E A I+ + N
Sbjct: 289 YDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVPGYE-APIN-LVYSQRN 345
Query: 367 RGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLL 403
R +R+ LE R P S+ +PY+ S +
Sbjct: 346 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 382
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 53 ALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELPKWNYD 112
A+ +ED T R ED P DK + E I + S + ++ P +
Sbjct: 126 AVTTEDQTQKRREDYY----MPRLDKFVTEVAPIEAS--TASSDAGTYNDQNKYPAFVRL 179
Query: 113 GSSTG--QAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYT--PAGEPIPTNKRHRAAE 168
GS + G++ +IL + GGNN+ ++ D YT AG P N +
Sbjct: 180 GSGSQFIYKKGDNYSLILNNHEV------GGNNLKLVGDAYTYGIAGTPYKVNHENNGLI 233
Query: 169 IFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQG 211
F NSK P GI + L V G P+ Y +G
Sbjct: 234 GFGNSKEEHSDPK-GILSQDPLTNYAVLGDSGSPLFVYDREKG 275
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 25/137 (18%)
Query: 138 FRGGNNILVICDTYTPAGE--PIPTN---------KRHRAAEIFS---NSKVSAEVP--- 180
F + I+ I + Y + P+P N + R AEI KV + P
Sbjct: 144 FEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGH 203
Query: 181 --WFGIEQEYTLLQQNVKWPLGWP-VGAYPGPQGPYYCGAGADKSFGRDIADAHY----- 232
W I L+ V WP+ W G P G + AG+ G++I Y
Sbjct: 204 EGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP 263
Query: 233 KACLYAGINISGTNGEV 249
+ +Y + I G G++
Sbjct: 264 LSLMYEFVGIKGQKGKM 280
>pdb|3HA2|A Chain A, Crystal Structure Of Protein (Nadph-Quinone Reductase)
From P.Pentosaceus, Northeast Structural Genomics
Consortium Target Ptr24a
pdb|3HA2|B Chain B, Crystal Structure Of Protein (Nadph-Quinone Reductase)
From P.Pentosaceus, Northeast Structural Genomics
Consortium Target Ptr24a
Length = 177
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 166 AAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGP 209
A E FSN V F +EQE +LL QN + L +P+ Y P
Sbjct: 24 AIENFSNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLYWYSAP 67
>pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|A Chain A, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|A Chain A, The Structure Of Rhinovirus 16
pdb|1ND3|A Chain A, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 285
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 123 DSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKV 175
DSE+ + P KD G +V+ Y P G PIPT + A + +N+ V
Sbjct: 119 DSEITMVPSVAAKDGHIGH---IVMQYMYVPPGAPIPTTRDDYAWQSGTNASV 168
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 123 DSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKV 175
DSE+ + P KD G +V+ Y P G PIPT + A + +N+ V
Sbjct: 119 DSEITMVPSVAAKDGHIGH---IVMQYMYVPPGAPIPTTRDDYAWQSGTNASV 168
>pdb|4F88|1 Chain 1, X-Ray Crystal Structure Of Plyc
pdb|4F88|2 Chain 2, X-Ray Crystal Structure Of Plyc
Length = 465
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 295 IEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHET 354
I GD T +T S E E +KKA+ +L + EH+S GN+ K+ T
Sbjct: 205 ITGDGKNPSVGTGNATVSASSEANREKLKKALTDLFNNNLEHLSGEFYGNQVLNAMKYGT 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,003,534
Number of Sequences: 62578
Number of extensions: 644832
Number of successful extensions: 791
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 13
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)