Query 014226
Match_columns 428
No_of_seqs 200 out of 1634
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03036 glutamine synthetase; 100.0 9E-111 2E-115 863.6 41.9 428 1-428 1-432 (432)
2 PLN02284 glutamine synthetase 100.0 3.4E-89 7.3E-94 692.6 37.2 345 62-409 5-353 (354)
3 COG0174 GlnA Glutamine synthet 100.0 1.7E-87 3.7E-92 692.2 32.1 335 61-411 3-361 (443)
4 TIGR00653 GlnA glutamine synth 100.0 6.7E-86 1.5E-90 688.6 30.2 336 62-411 1-375 (460)
5 PRK09469 glnA glutamine synthe 100.0 6.3E-85 1.4E-89 682.3 31.2 337 62-411 4-383 (469)
6 TIGR03105 gln_synth_III glutam 100.0 4.1E-83 8.9E-88 663.9 28.5 326 65-411 2-354 (435)
7 PF00120 Gln-synt_C: Glutamine 100.0 3.6E-69 7.8E-74 525.6 17.6 240 159-407 1-259 (259)
8 KOG0683 Glutamine synthetase [ 100.0 3.8E-57 8.2E-62 444.6 21.8 349 65-415 18-374 (380)
9 COG3968 Uncharacterized protei 99.7 3.6E-16 7.7E-21 158.2 17.1 216 178-410 214-502 (724)
10 PF03951 Gln-synt_N: Glutamine 99.5 3E-14 6.4E-19 116.4 6.6 75 76-153 2-84 (84)
11 TIGR02050 gshA_cyan_rel unchar 98.6 1.6E-06 3.5E-11 86.3 17.4 187 181-408 1-249 (287)
12 PRK13517 carboxylate-amine lig 98.6 7.1E-07 1.5E-11 92.0 15.1 132 179-344 10-167 (373)
13 PRK13515 carboxylate-amine lig 98.5 3.9E-06 8.5E-11 86.4 15.3 131 179-344 5-161 (371)
14 PRK13516 gamma-glutamyl:cystei 98.4 1.3E-05 2.7E-10 82.8 17.2 188 179-406 11-259 (373)
15 PLN02611 glutamate--cysteine l 98.1 4.9E-05 1.1E-09 80.5 13.5 149 165-344 53-246 (482)
16 PRK13518 carboxylate-amine lig 98.1 0.00011 2.4E-09 75.3 15.6 95 243-344 49-169 (357)
17 TIGR01436 glu_cys_lig_pln glut 97.5 0.0018 4E-08 68.3 14.6 141 176-344 18-203 (446)
18 PF04107 GCS2: Glutamate-cyste 97.5 0.00039 8.4E-09 69.2 8.9 96 242-343 34-158 (288)
19 TIGR02048 gshA_cyano glutamate 97.5 0.0011 2.3E-08 68.7 11.6 93 244-343 31-149 (376)
20 COG2170 Uncharacterized conser 97.2 0.0019 4.1E-08 65.3 9.3 188 180-410 3-254 (369)
21 TIGR03444 gshA_related glutama 96.6 0.011 2.4E-07 61.2 9.7 88 252-344 70-186 (390)
22 KOG0683 Glutamine synthetase [ 86.7 0.13 2.8E-06 52.4 -1.3 58 343-410 285-342 (380)
23 PF06877 RraB: Regulator of ri 84.7 7.8 0.00017 32.2 8.7 95 162-287 2-98 (104)
24 cd04869 ACT_GcvR_2 ACT domains 80.3 3.6 7.7E-05 32.2 4.8 65 226-292 11-81 (81)
25 PF13740 ACT_6: ACT domain; PD 73.3 7.4 0.00016 30.6 4.8 62 226-290 14-75 (76)
26 COG3572 GshA Gamma-glutamylcys 71.5 5.4 0.00012 41.5 4.4 45 245-290 91-136 (456)
27 PF12224 Amidoligase_2: Putati 70.5 43 0.00093 32.1 10.4 21 383-403 225-245 (252)
28 PRK02471 bifunctional glutamat 69.6 11 0.00024 42.7 6.9 16 179-194 18-33 (752)
29 cd04872 ACT_1ZPV ACT domain pr 67.1 9.5 0.00021 30.7 4.3 67 226-293 13-79 (88)
30 cd04870 ACT_PSP_1 CT domains f 65.2 15 0.00032 28.6 5.0 65 226-292 11-75 (75)
31 KOG0558 Dihydrolipoamide trans 61.5 7.4 0.00016 39.9 3.1 53 222-293 250-302 (474)
32 PRK00194 hypothetical protein; 60.4 16 0.00035 29.3 4.5 65 226-291 15-79 (90)
33 cd04893 ACT_GcvR_1 ACT domains 55.4 35 0.00076 26.8 5.5 64 225-291 12-75 (77)
34 TIGR02778 ligD_pol DNA polymer 52.3 51 0.0011 32.4 7.1 110 250-376 113-225 (245)
35 PF14395 COOH-NH2_lig: Phage p 45.9 26 0.00056 34.6 3.9 49 262-312 60-108 (261)
36 PF04468 PSP1: PSP1 C-terminal 45.3 22 0.00048 29.1 2.9 59 225-288 25-83 (88)
37 cd04863 MtLigD_Pol_like MtLigD 44.4 92 0.002 30.3 7.5 112 248-376 99-213 (231)
38 cd04866 LigD_Pol_like_3 LigD_P 40.7 2E+02 0.0043 27.9 9.1 111 249-376 91-205 (223)
39 smart00874 B5 tRNA synthetase 38.4 60 0.0013 24.8 4.3 46 231-286 24-71 (71)
40 COG3364 Zn-ribbon containing p 38.4 16 0.00036 31.0 1.2 24 236-260 55-78 (112)
41 cd04861 LigD_Pol_like LigD_Pol 37.8 1.3E+02 0.0028 29.2 7.4 113 250-376 97-209 (227)
42 PF09904 HTH_43: Winged helix- 37.6 82 0.0018 26.2 5.1 24 161-190 33-56 (90)
43 cd04875 ACT_F4HF-DF N-terminal 37.3 73 0.0016 24.4 4.7 60 226-287 11-73 (74)
44 cd04865 LigD_Pol_like_2 LigD_P 34.8 1.5E+02 0.0032 28.9 7.2 113 250-376 98-210 (228)
45 cd04862 PaeLigD_Pol_like PaeLi 34.2 1.6E+02 0.0035 28.6 7.3 114 249-376 96-209 (227)
46 cd04864 LigD_Pol_like_1 LigD_P 33.0 1.7E+02 0.0036 28.5 7.3 111 248-376 97-210 (228)
47 PF03484 B5: tRNA synthetase B 30.1 1.2E+02 0.0027 23.3 4.9 46 230-286 23-70 (70)
48 PRK13011 formyltetrahydrofolat 27.6 1E+02 0.0022 30.8 5.0 65 225-291 18-84 (286)
49 cd04882 ACT_Bt0572_2 C-termina 26.7 1.6E+02 0.0035 21.2 4.9 49 224-287 13-63 (65)
50 PF11679 DUF3275: Protein of u 25.5 50 0.0011 31.7 2.2 31 152-182 173-206 (214)
51 COG4456 VagC Virulence-associa 23.6 56 0.0012 26.2 1.8 28 364-392 7-34 (74)
52 PRK06027 purU formyltetrahydro 22.5 1.8E+02 0.0039 29.1 5.7 67 225-292 17-85 (286)
53 PF09845 DUF2072: Zn-ribbon co 21.8 39 0.00085 30.0 0.7 21 238-259 82-102 (131)
54 TIGR02776 NHEJ_ligase_prk DNA 20.2 2.8E+02 0.0061 30.5 7.0 110 249-375 389-502 (552)
No 1
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=8.8e-111 Score=863.63 Aligned_cols=428 Identities=91% Similarity=1.479 Sum_probs=393.3
Q ss_pred CccccCcccceeeecccccCCCCCchhhhhhhHHHHHhhccCcccCcceEEEEeccCchHHHHHHHHHhcCCCCCCCEEE
Q 014226 1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII 80 (428)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~v~ 80 (428)
|||||+||+||||||+|.++.++|+++++|+|+++||.|++..+...+|+.+++++..+.+..+++|++.+..++.+.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T PLN03036 1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII 80 (432)
T ss_pred CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence 99999999999999999999999999999999999999998766788999999887665677788888887667889999
Q ss_pred EEEEeecCCCCceeeccc----cCCCCCCCCcccccCCCCCCCCCCCCceeeeeeeeeecCCCCCCeEEEEEEEecCCCC
Q 014226 81 AEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE 156 (428)
Q Consensus 81 ~~~~d~~G~G~~lR~K~v----p~~~~~~l~~~~fdgs~~g~~~~~~~D~~l~PD~~~~~Pw~~~~~a~Vlcd~~~~dG~ 156 (428)
++|+|+||.|..+|||.. |++++++++.|+||||++|+.+++++|++|+||.++++||+++++++|+||++++||+
T Consensus 81 ~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y~~dG~ 160 (432)
T PLN03036 81 AEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE 160 (432)
T ss_pred EEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEECCCCC
Confidence 999999999988999984 5667888888999999999998899999999999999999876789999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHH
Q 014226 157 PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 236 (428)
Q Consensus 157 P~~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 236 (428)
|++.|||++|++++++++..|+++++|+|+|||||+.+..++.||+.+..|.++++||+..+.+..+.++++++++++|+
T Consensus 161 P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~ 240 (432)
T PLN03036 161 PIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240 (432)
T ss_pred CCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865444556665557778899998887777778999999999999
Q ss_pred HcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCC
Q 014226 237 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREE 316 (428)
Q Consensus 237 ~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~ 316 (428)
++||+|+++|+|+|||||||++.|+++|++||++++||++||+||++||++|||||||+.++++|||||+|+||++.+++
T Consensus 241 ~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~ 320 (432)
T PLN03036 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREE 320 (432)
T ss_pred HCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999998754799999999999985544
Q ss_pred CchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCH
Q 014226 317 GGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDP 396 (428)
Q Consensus 317 ~g~~~~~~fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNP 396 (428)
+|.+.++++++|++|+|+++++||++||||||+|++|||.|.+++||++||+++||||......+++|||+|.||++|||
T Consensus 321 gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~~~~~~~~riE~R~pda~aNP 400 (432)
T PLN03036 321 GGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDP 400 (432)
T ss_pred chHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCCCCCCcccEEEEeCCCCCCCH
Confidence 57889999999966999999999999999999999999777799999999999999997653334689999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHhhhhccC
Q 014226 397 YVVTSLLAETTILWEPTLEAEALAAQKLALNV 428 (428)
Q Consensus 397 YLalAaiLaAGl~G~~~~~~~~~~~~~~~~~~ 428 (428)
||++|+|+.+.+...|+||||+||||||+|||
T Consensus 401 YLv~aai~~t~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T PLN03036 401 YIVTSLLAETTILWEPTLEAEALAAQKLSLNV 432 (432)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHhhhhccCC
Confidence 99999999999999999999999999999997
No 2
>PLN02284 glutamine synthetase
Probab=100.00 E-value=3.4e-89 Score=692.64 Aligned_cols=345 Identities=82% Similarity=1.407 Sum_probs=305.6
Q ss_pred HHHHHHHhcCCCCCCCEEEEEEEeecCCCCceeecc----ccCCCCCCCCcccccCCCCCCCCCCCCceeeeeeeeeecC
Q 014226 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKS----KPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 137 (428)
Q Consensus 62 ~~~~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~----vp~~~~~~l~~~~fdgs~~g~~~~~~~D~~l~PD~~~~~P 137 (428)
+.+++|.... ..+.++++|+|+++.+..+|||. +|.+.+++.+.|+||||++|+..++++|++|+||+++++|
T Consensus 5 ~~~~~~~~~~---~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~P 81 (354)
T PLN02284 5 SDLINLNLSD---STDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (354)
T ss_pred hhhHhhcccC---cCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEECC
Confidence 3356665553 46789999999888765677775 5777888888899999999988889999999999989999
Q ss_pred CCCCCeEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCccccc
Q 014226 138 FRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGA 217 (428)
Q Consensus 138 w~~~~~a~Vlcd~~~~dG~P~~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (428)
|+++++++|+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+.+..++.+++.++.+.++++||+..
T Consensus 82 w~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~ 161 (354)
T PLN02284 82 FRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGV 161 (354)
T ss_pred CCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCc
Confidence 98756899999999999999999999999999999999999999999999999986543344554444667788888887
Q ss_pred CcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCC
Q 014226 218 GADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG 297 (428)
Q Consensus 218 ~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~ 297 (428)
+.+..+.++++++|+++|+++||+|+++|||+|||||||++.|+++|++||++++||++||+||++||++|||||||+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~ 241 (354)
T PLN02284 162 GADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPG 241 (354)
T ss_pred chhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCC
Confidence 76666789999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccCC
Q 014226 298 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRET 377 (428)
Q Consensus 298 ~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~ 377 (428)
+++|||||+|+|||+.++++|.+.++++++|+.|+|+++++||++||||||+|++|||.+.+++||.+||+++||||...
T Consensus 242 ~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~~ 321 (354)
T PLN02284 242 DWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRDT 321 (354)
T ss_pred CCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCCC
Confidence 46999999999999754446789999999998899999999999999999999999997779999999999999999765
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHHHHhhc
Q 014226 378 EKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 409 (428)
Q Consensus 378 ~~~~~~riE~R~~da~aNPYLalAaiLaAGl~ 409 (428)
...+++|||+|+||++|||||++|++|++.+.
T Consensus 322 ~~~~~~riE~R~pd~~aNPYLa~aaila~~~~ 353 (354)
T PLN02284 322 EKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353 (354)
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHHHHhc
Confidence 33346799999999999999999999999876
No 3
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-87 Score=692.18 Aligned_cols=335 Identities=27% Similarity=0.424 Sum_probs=296.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEEEEeecCCCCceeeccccCCC----CCCCCc--ccccCCCC-CCCCCCCCceeeeeee-
Q 014226 61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEH----PSELPK--WNYDGSST-GQAPGEDSEVILYPQA- 132 (428)
Q Consensus 61 ~~~~~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~vp~~~----~~~l~~--~~fdgs~~-g~~~~~~~D~~l~PD~- 132 (428)
.+.+..+++.+ .|++|++.|+|+.|. +|+|++|+++ +..... ..||||++ ||...+++|++|+||+
T Consensus 3 ~~~~~~~~~~~---~V~~v~~~f~D~~G~---~r~k~ip~~~~~~~~~~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~ 76 (443)
T COG0174 3 KEDVLKLLKEN---GVKFVDLRFTDLNGV---LRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLKPDLS 76 (443)
T ss_pred HHHHHHHHHhC---CceEEEEEEECCCCC---eeeEEEecccchhHHHhhhccCcCcCCccccccCCCCCCCEEEeeccC
Confidence 45666777774 899999999999999 9999999994 333333 45999999 8888789999999997
Q ss_pred -eeecCCCCCCeEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhccccc-ceEeeeeeEEEecCCCCCCCCCCCCCCCCCC
Q 014226 133 -IFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV-PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQ 210 (428)
Q Consensus 133 -~~~~Pw~~~~~a~Vlcd~~~~dG~P~~~~PR~~Lkr~l~~l~~~G~~-~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~ 210 (428)
++++||.++++|+|+||+++++|+|++.|||++|||+++++++.|+. +++|+|+|||||+.....+. .+.+.+.
T Consensus 77 T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~----~~~~~~~ 152 (443)
T COG0174 77 TLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPD----GGRPADK 152 (443)
T ss_pred ceeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCcc----cCccCCC
Confidence 89999999779999999999999999999999999999999999997 59999999999997543111 1467788
Q ss_pred CCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEee
Q 014226 211 GPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSL 290 (428)
Q Consensus 211 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATF 290 (428)
++||+..+.++ ..+++.+|+.+|+++||+||.+|||+|||||||++++.++|++||++++||++||+||++||++|||
T Consensus 153 ~~yf~~~~~~~--~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTF 230 (443)
T COG0174 153 GGYFDVAPLDE--AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATF 230 (443)
T ss_pred CcccCcccccc--HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999887 5788888888899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeeecccccccc------CCC---chH-HHHHHHHHHHHhHHHHhhcccc---cccccC-CCCCCCCC
Q 014226 291 DPKPIEGDWNGAGCHTNYSTKSMR------EEG---GYE-TIKKAILNLSLRHKEHISAYGE---GNERRL-TGKHETAS 356 (428)
Q Consensus 291 mpKP~~~~~~GsG~H~H~SL~~~~------~~~---g~~-~~~~fiaGl~L~h~~al~a~~~---nSYkRl-~p~~~ap~ 356 (428)
||||+.++ +|||||+|+|||+.+ +++ |++ .+++||||| |+|+++++||++ |||||| +|..|||+
T Consensus 231 MpKP~~g~-~GSGMH~H~Sl~~~dg~nlF~d~~~~~~lS~~~~~~igGi-lkha~~~~ai~~PtvNSYkRl~vp~e~AP~ 308 (443)
T COG0174 231 MPKPFFGD-NGSGMHVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGI-LKHAPALTAITAPTVNSYKRLGVPYEWAPT 308 (443)
T ss_pred eCCCCCCC-CCCceeEEEEEecCCCCccccCCCCcccHHHHHHHHHHHH-HHHHHHHHhHhCCCcchhhhcCCCcccCcc
Confidence 99999995 999999999999653 122 233 458999999 999999999986 999999 66356999
Q ss_pred CCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014226 357 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411 (428)
Q Consensus 357 ~~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~ 411 (428)
+++||.+|||++||||.+...+.++|||+|+||++|||||++||+|+|||+||
T Consensus 309 --~~~wg~~NRsa~iRIP~~~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~GI 361 (443)
T COG0174 309 --YIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDGI 361 (443)
T ss_pred --hhcccccCcceEEEeCCCCCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998844334689999999999999999999999999994
No 4
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=6.7e-86 Score=688.58 Aligned_cols=336 Identities=24% Similarity=0.335 Sum_probs=293.0
Q ss_pred HHHHHHHhcCCCCCCCEEEEEEEeecCCCCceeeccccCCCCCC-CC--cccccCCCC-CCCCCCCCceeeeeee--eee
Q 014226 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSE-LP--KWNYDGSST-GQAPGEDSEVILYPQA--IFK 135 (428)
Q Consensus 62 ~~~~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~vp~~~~~~-l~--~~~fdgs~~-g~~~~~~~D~~l~PD~--~~~ 135 (428)
+++.++|+.+ .|++|+++|+|++|+ +|||.||++++.+ +. ..+|+++++ |+...+++|++|+||+ +++
T Consensus 1 ~e~~~~l~~~---~i~~v~~~~~Dl~G~---~rgk~vp~~~~~~~~~~~G~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~ 74 (460)
T TIGR00653 1 EEVFKLIKEE---NVKFVDLRFTDIKGK---PQHVEIPASALDKEAFEEGIMFDGSSIRGFQGIEESDMLLKPDPSTAVI 74 (460)
T ss_pred ChHHHHHHhC---CCcEEEEEEECCCCC---EeeEEEeHHHhhHHHhcCCeecccccccccccCCCCcEEEeccCCccee
Confidence 3677888874 799999999999999 9999999999964 32 378899988 7777788999999998 899
Q ss_pred cCCCCCCeEEEEEEEecC-CCCCCCCCHHHHHHHHHHhhh-cccccceEeeeeeEEEecCCCCCCC--------------
Q 014226 136 DPFRGGNNILVICDTYTP-AGEPIPTNKRHRAAEIFSNSK-VSAEVPWFGIEQEYTLLQQNVKWPL-------------- 199 (428)
Q Consensus 136 ~Pw~~~~~a~Vlcd~~~~-dG~P~~~~PR~~Lkr~l~~l~-~~G~~~~~g~E~EF~L~~~~~~~~~-------------- 199 (428)
+||.++++++|+||+++. ||+|++.|||++|||++++++ +.|+++++|+|+|||||+.+.....
T Consensus 75 ~pw~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (460)
T TIGR00653 75 DPWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGR 154 (460)
T ss_pred ccCCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeecccccc
Confidence 999775799999999998 999999999999999999999 8999999999999999986432100
Q ss_pred -----CCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHH
Q 014226 200 -----GWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSR 274 (428)
Q Consensus 200 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K 274 (428)
++ .+..+.+.+.||+..+.+. ..+++++|+++|+++||+|+++|+|+|||||||++.|+++|++||++++||
T Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k 231 (460)
T TIGR00653 155 WNEESGN-RGYKPRDKGGYFPVAPTDT--AVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYK 231 (460)
T ss_pred ccccCCc-CCCcccCCccccCCCCccc--HHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHH
Confidence 10 0223455556777777665 467888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccC-----C---CchH-HHHHHHHHHHHhHHHHhhcccc---
Q 014226 275 YLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-----E---GGYE-TIKKAILNLSLRHKEHISAYGE--- 342 (428)
Q Consensus 275 ~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~-----~---~g~~-~~~~fiaGl~L~h~~al~a~~~--- 342 (428)
++||+||++||++|||||||+.+ .+|||+|+|+||||... + .|++ ..++||||| |+|+++++||++
T Consensus 232 ~~ik~vA~~~G~~ATFmpKP~~~-~~GSG~H~H~Sl~d~g~n~F~d~~~~~~lS~~~~~fiaGi-L~h~~~l~a~~~Ptv 309 (460)
T TIGR00653 232 YVVKNVARKHGKTATFMPKPLFG-DNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGI-LKHAKALAAFTNPTV 309 (460)
T ss_pred HHHHHHHHHhCCEEEEecccCCC-CCcCceeEEECccCCCeeccCCCCCCcccCHHHHHHHHHH-HHHHHHhhhHhcCCC
Confidence 99999999999999999999999 59999999999998421 1 2243 458999999 999999999986
Q ss_pred cccccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014226 343 GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411 (428)
Q Consensus 343 nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~ 411 (428)
||||||+|++|||+ +++||++||+++||||.... +.++|||+|++|++|||||++||+|+|||+|+
T Consensus 310 NSYkRl~p~~~ap~--~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYLalAa~laAGl~Gi 375 (460)
T TIGR00653 310 NSYKRLVPGYEAPV--YLAYSARNRSALIRIPASGN-PKAKRIEFRFPDPSANPYLAFAAMLMAGLDGI 375 (460)
T ss_pred cchhhcCCCCcCcc--eeecccCCCCceEEecCCCC-CcCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999997642 24679999999999999999999999999994
No 5
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=6.3e-85 Score=682.32 Aligned_cols=337 Identities=22% Similarity=0.294 Sum_probs=290.9
Q ss_pred HHHHHHHhcCCCCCCCEEEEEEEeecCCCCceeeccccCCCCCC-CC--cccccCCCC-CCCCCCCCceeeeeee--eee
Q 014226 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSE-LP--KWNYDGSST-GQAPGEDSEVILYPQA--IFK 135 (428)
Q Consensus 62 ~~~~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~vp~~~~~~-l~--~~~fdgs~~-g~~~~~~~D~~l~PD~--~~~ 135 (428)
++++++++.+ .|++|++.|+|++|+ +|||.+|++++++ .. ...|+++++ |+...+++|++++||+ +++
T Consensus 4 ~~~~~~l~~~---~i~~v~~~~~Dl~G~---~rgk~ip~~~~~~~~~~~G~~f~~~~~~g~~~~~~~D~~l~PD~~Tl~~ 77 (469)
T PRK09469 4 EHVLTMLNEH---EVKFVDLRFTDTKGK---EQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVL 77 (469)
T ss_pred HHHHHHHHhC---CCCEEEEEEECCCCC---EeEEEEEHHHhhHHHhcCCceeccccccccCcCCCCCEEEEEcCCccEE
Confidence 4678888875 799999999999999 9999999999974 32 367899988 7767789999999998 899
Q ss_pred cCCCCCCeEEEEEEEecCC-CCCCCCCHHHHHHHHHHhhhcccc--cceEeeeeeEEEecCCCC--CC-----------C
Q 014226 136 DPFRGGNNILVICDTYTPA-GEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNVK--WP-----------L 199 (428)
Q Consensus 136 ~Pw~~~~~a~Vlcd~~~~d-G~P~~~~PR~~Lkr~l~~l~~~G~--~~~~g~E~EF~L~~~~~~--~~-----------~ 199 (428)
+||.+.++|+|+||+++.+ |+|++.|||++|||++++++++|+ ++++|+|+|||||++... .+ .
T Consensus 78 ~Pw~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~~ 157 (469)
T PRK09469 78 DPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEA 157 (469)
T ss_pred CCcCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHHHcCCCcceeEecceEEEEEeccccccCccccccccccchh
Confidence 9996546999999999985 999999999999999999999999 999999999999985430 00 0
Q ss_pred CCCC---------CCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCC-CCcEEEEeCCCcHHHHhHH
Q 014226 200 GWPV---------GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDH 269 (428)
Q Consensus 200 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aAD~ 269 (428)
.|.. +..+.+.+.||+..+.+. ..+++++|+++|+++||+|+++|||+| ||||||++.|.++|++||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~ 235 (469)
T PRK09469 158 AWNSGTKYEGGNKGHRPGVKGGYFPVPPVDS--SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADE 235 (469)
T ss_pred cccccccccCCCCCCccCCCccccCCCcccc--hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHH
Confidence 0100 112334445777777776 578888888899999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccC-------CCchH-HHHHHHHHHHHhHHHHhhccc
Q 014226 270 IWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-------EGGYE-TIKKAILNLSLRHKEHISAYG 341 (428)
Q Consensus 270 ~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~-------~~g~~-~~~~fiaGl~L~h~~al~a~~ 341 (428)
+++||++||+||++||++|||||||+.+ .+|||||+|+|||+... ..|++ ..++||||| |+|+++++||+
T Consensus 236 ~~~~k~~vk~va~~~g~~atFmpKP~~~-~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGl-L~h~~~l~a~~ 313 (469)
T PRK09469 236 IQIYKYVVHNVAHAFGKTATFMPKPMFG-DNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGI-IKHAKAINALA 313 (469)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeccccCC-CCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHH-HHHHHHHHhhh
Confidence 9999999999999999999999999999 59999999999998421 12343 457999999 99999999998
Q ss_pred c---cccccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014226 342 E---GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411 (428)
Q Consensus 342 ~---nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~ 411 (428)
+ ||||||+|++|||+ +++||++||+++||||.... +.++|||+|++|++|||||++||+|+|||+||
T Consensus 314 ~PtvNSYkRl~p~~~ap~--~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYL~~AaiLaAGldGI 383 (469)
T PRK09469 314 NPTTNSYKRLVPGYEAPV--MLAYSARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGI 383 (469)
T ss_pred cCCCchHhhcCCCCcCcC--cceecCCCCcceEEeccCCC-CCCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6 99999999999999 99999999999999995322 24679999999999999999999999999994
No 6
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=4.1e-83 Score=663.86 Aligned_cols=326 Identities=20% Similarity=0.252 Sum_probs=279.6
Q ss_pred HHHHhcCCCCCCCEEEEEEEeecCCCCceeeccccCCCCCCCC--cccccCCCCC--CCCCCCCceeeeeee--eeecCC
Q 014226 65 EDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELP--KWNYDGSSTG--QAPGEDSEVILYPQA--IFKDPF 138 (428)
Q Consensus 65 ~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~vp~~~~~~l~--~~~fdgs~~g--~~~~~~~D~~l~PD~--~~~~Pw 138 (428)
+++|+.+ .|++|++.|+|++|+ +|||.||+++++++. ..+|++++++ ....+++|++|+||+ ++++||
T Consensus 2 ~~~l~~~---~i~~v~~~~~D~~G~---~r~k~vp~~~~~~~~~~G~~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw 75 (435)
T TIGR03105 2 QALARDK---GIKYFLASFVDLHGV---QKAKLVPAEAIDHMATGGAGFAGFAAWGLGQSPADPDLMAIPDLDSLTQLPW 75 (435)
T ss_pred hhhHhhC---CCCEEEEEEECCCCC---eeEEEEeHHHHHHHHcCCCcccchhhhccCCCCCCCCEEEEeccccceeCCC
Confidence 5677764 799999999999999 999999999987753 2677877663 223467999999997 899999
Q ss_pred CCCCeEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccC
Q 014226 139 RGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAG 218 (428)
Q Consensus 139 ~~~~~a~Vlcd~~~~dG~P~~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (428)
.++ +++|+||++. +|+|++.|||++|+|++++++++|+++++|+|+|||||+.+.++... +.+..+....++|+..+
T Consensus 76 ~~~-~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (435)
T TIGR03105 76 QPG-VAWVAADLHV-NGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLS-IADRADTLAKPCYDQRG 152 (435)
T ss_pred CCC-eEEEEEEEee-CCCcCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCCCCcc-cCCCCCCCCccCCCCcc
Confidence 884 9999999976 89999999999999999999999999999999999999875431100 11111112234566666
Q ss_pred cChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCC
Q 014226 219 ADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGD 298 (428)
Q Consensus 219 ~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~ 298 (428)
.++ ..+++++|+++|+++||+|+++|+|+|||||||++.|.++|++||++++||++||+||++||++|||||||+.+
T Consensus 153 ~~~--~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~- 229 (435)
T TIGR03105 153 LMR--RYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFAD- 229 (435)
T ss_pred hhh--hhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCC-
Confidence 554 57888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccccccccC---------C--CchH-HHHHHHHHHHHhHHHHhhcccc---cccccCCCC------CCCCCC
Q 014226 299 WNGAGCHTNYSTKSMRE---------E--GGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGK------HETASI 357 (428)
Q Consensus 299 ~~GsG~H~H~SL~~~~~---------~--~g~~-~~~~fiaGl~L~h~~al~a~~~---nSYkRl~p~------~~ap~~ 357 (428)
.+|||+|+|+|||+.++ + .+++ ..++||||| |+|+++++||++ ||||||+|+ +|||+
T Consensus 230 ~~GsG~H~H~Sl~d~~g~n~f~d~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP~- 307 (435)
T TIGR03105 230 LTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGI-LHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAPN- 307 (435)
T ss_pred CCccceEEEEeeecCCCcccccCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHCCCCccccccCCCcCCcCcccCCc-
Confidence 59999999999996421 1 1243 347999999 999999999985 999999996 79999
Q ss_pred CceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014226 358 DSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411 (428)
Q Consensus 358 ~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~ 411 (428)
+++||++||+++||||. .+|||+|++|++|||||++||+|+||++||
T Consensus 308 -~~~WG~~NR~a~iRv~~------~~riE~R~~da~aNPYL~lAailaAgl~Gi 354 (435)
T TIGR03105 308 -FISYGGNNRTHMVRIPD------PGRFELRLADGAANPYLAQAAILAAGLDGI 354 (435)
T ss_pred -eeeccCCCCceeEeccC------CCeeEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999992 479999999999999999999999999995
No 7
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=3.6e-69 Score=525.62 Aligned_cols=240 Identities=25% Similarity=0.448 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCC-CCCC----CCCCCcccccCcChhhHHHHHHHHHH
Q 014226 159 PTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPV-GAYP----GPQGPYYCGAGADKSFGRDIADAHYK 233 (428)
Q Consensus 159 ~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~ 233 (428)
+.|||++|||+++++++.|+++++|+|+|||||+++... +++. ...+ ...++||+....+. ..+++++|++
T Consensus 1 ~~~PR~~Lkr~~~~~~~~g~~~~~g~E~EF~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 76 (259)
T PF00120_consen 1 EACPRSILKRVLERLEEMGLSFKVGFELEFYLFDRDDDG--GWPRPSGYPDEPGQDYGGYYSLSPLDA--GEDFLEEIVD 76 (259)
T ss_dssp -T-HHHHHHHHHHHHHHTCCEEEEEEEEEEEEESTCEET--TSSSTTSEESESSSTTTBSSTTTTTST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEeEEEEEeccCccc--ccccccccccccccccCCcCCCchhhH--HHHHHHHHHH
Confidence 479999999999999999999999999999999986331 2221 1111 23556777776554 5788888888
Q ss_pred HHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccc
Q 014226 234 ACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSM 313 (428)
Q Consensus 234 ~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~ 313 (428)
+|+++||+|+++|+|+|||||||++.|.++|++||+++++|++||+||++||++|||||||+.+. +|||+|+|+|||+.
T Consensus 77 ~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~-~GsG~H~h~Sl~~~ 155 (259)
T PF00120_consen 77 ALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGD-NGSGMHLHISLWDA 155 (259)
T ss_dssp HHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTS-S--BEEEEEEECHH
T ss_pred HHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCc-Cccchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999995 99999999999974
Q ss_pred -cC------CC---chHH-HHHHHHHHHHhHHHHhhcccc---cccccCCCCCCCCCCCceeeccCCCcceeeeccCCCC
Q 014226 314 -RE------EG---GYET-IKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEK 379 (428)
Q Consensus 314 -~~------~~---g~~~-~~~fiaGl~L~h~~al~a~~~---nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~~~ 379 (428)
++ ++ +++. .++|++|| |+|+++|+||++ ||||||+|++|||+ +++||.+||+++||||....
T Consensus 156 ~~g~n~f~~~~~~~~ls~~~~~flaGl-l~h~~~l~a~~~pt~nsykRl~~~~~ap~--~~~wG~~NR~a~iRi~~~~~- 231 (259)
T PF00120_consen 156 KDGKNLFYDPDGPAGLSELARHFLAGL-LKHAPALTAFTAPTVNSYKRLVPGSWAPT--YISWGYDNRSAAIRIPSGGG- 231 (259)
T ss_dssp HTTEETTBSTTSHGHHHHHHHHHHHHH-HCHHHHHHHCHSTSTTHHHHSSSTSSSSS--BEEEEESHTTSSEEE-HHHH-
T ss_pred cccccccccccccccccHHHHHHHHHH-HHHHHHHHhhhCccCcchhhCCCCcccee--ccchhhcccchhhheecccc-
Confidence 21 21 3333 47999999 999999999964 99999999999999 99999999999999998711
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHHHHh
Q 014226 380 QGKGYLEDRRPASNMDPYVVTSLLAETT 407 (428)
Q Consensus 380 ~~~~riE~R~~da~aNPYLalAaiLaAG 407 (428)
++++|||+|+||++|||||++|++|+||
T Consensus 232 ~~~~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 232 PKGTRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp HGGSEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred ccccEEeccCCCCCcCHHHHHHHHHhcC
Confidence 2468999999999999999999999998
No 8
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-57 Score=444.62 Aligned_cols=349 Identities=62% Similarity=1.108 Sum_probs=325.7
Q ss_pred HHHHhcCCCCCCCEEEEEEEeecCCCCceeeccc----cCCCCCCCCcccccCCCCCCCCCCCCceeeeeeeeeecCCCC
Q 014226 65 EDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRG 140 (428)
Q Consensus 65 ~~~l~~~~~p~~~~v~~~~~d~~G~G~~lR~K~v----p~~~~~~l~~~~fdgs~~g~~~~~~~D~~l~PD~~~~~Pw~~ 140 (428)
..++... +.-+.|.+.|+|+||+|+.+|+|+- +.+.+++++.|.|||++++++.+.+||.+|+|..+++.||+.
T Consensus 18 ~~~~~L~--~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~g~nSd~~l~Pva~~~dPfr~ 95 (380)
T KOG0683|consen 18 LEYLYLR--AKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAPGENSDVYLRPVAIYPDPFRN 95 (380)
T ss_pred hhhcccc--ccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccccCCCCceEEeehhhcCCcccC
Confidence 4444443 5568999999999999999999985 444677888899999999999999999999999999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcC
Q 014226 141 GNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGAD 220 (428)
Q Consensus 141 ~~~a~Vlcd~~~~dG~P~~~~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (428)
++..+|+|++++.+|.|.+.+-|..+.+++...+-..-.+++|.|+||.+++....++.|||.+++|.++++||+..+.+
T Consensus 96 g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGad 175 (380)
T KOG0683|consen 96 GNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGAD 175 (380)
T ss_pred CCCEEEEeeccCCCCCcccccchhhHHHHhccccccccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCceeecccc
Confidence 98999999999999999999999999999999887888999999999999999767899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCC
Q 014226 221 KSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWN 300 (428)
Q Consensus 221 ~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~ 300 (428)
+.|.+|++++.+++|...||++.+++.|++||||||.++|+.++.++|+++.+|+++++||+++|+.|||.|||..++|+
T Consensus 176 ~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~Wn 255 (380)
T KOG0683|consen 176 RVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWN 255 (380)
T ss_pred ccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhcc----cccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 301 GAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 301 GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~----~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
|+|||.++|..+++.++|.+.+..++-.++.+|..++.++ ...+-+||...+++...+.++||+.||.+.||||..
T Consensus 256 gaG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r~ 335 (380)
T KOG0683|consen 256 GAGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPRT 335 (380)
T ss_pred CcccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCceeeechh
Confidence 9999999999988878899999999999999999999999 567889999888999999999999999999999998
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCCCcH
Q 014226 377 TEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLE 415 (428)
Q Consensus 377 ~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G~~~~~ 415 (428)
....+.+.+|.|.||++++||+|..+++-..|...+.||
T Consensus 336 va~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~~~~~~ 374 (380)
T KOG0683|consen 336 VAAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLEAVELE 374 (380)
T ss_pred hhcccccccccCCCcCCCCcceeeHHHhhHHHhcccchh
Confidence 765567899999999999999999999999999988855
No 9
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.70 E-value=3.6e-16 Score=158.24 Aligned_cols=216 Identities=26% Similarity=0.329 Sum_probs=149.6
Q ss_pred ccceEeeeeeEEEecCCCCC--CC----CCCCCCCCCCCC-----CcccccCc-ChhhHHHHHHHHHHHHHHcCCceeec
Q 014226 178 EVPWFGIEQEYTLLQQNVKW--PL----GWPVGAYPGPQG-----PYYCGAGA-DKSFGRDIADAHYKACLYAGINISGT 245 (428)
Q Consensus 178 ~~~~~g~E~EF~L~~~~~~~--~~----~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~i~~~l~~~l~~~Gi~ve~~ 245 (428)
.-..+|.|+||||++++... |. |...-+.+.+.| +||...+- -..|+.|+-.++| ++||++..-
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeRV~~FM~Dve~~Ly----aLGIpaKTr 289 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPERVSAFMKDVEKELY----ALGIPAKTR 289 (724)
T ss_pred hccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccHHHHHHHHHHHHHHHH----HcCCccccc
Confidence 56789999999999876321 10 110001222333 45554442 2467777777654 799999999
Q ss_pred cCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHH----
Q 014226 246 NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYET---- 321 (428)
Q Consensus 246 h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~---- 321 (428)
|.|++||||||.--+.++--|+|+..+..+++|.+|++||++.-..-|||.|. +|||-|.|+|+-... |.|+
T Consensus 290 HNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGi-NGSGKH~NWSmGtd~---g~NLLdPg 365 (724)
T COG3968 290 HNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGI-NGSGKHNNWSMGTDD---GLNLLDPG 365 (724)
T ss_pred ccccCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCc-CCCCCccccccccCC---CcccCCCC
Confidence 99999999999999999999999999999999999999999999999999996 999999999996532 2222
Q ss_pred --------H----HHHHHHHHHhHHHHhhcccc--cccccCCCCCCCCC-CCc---------------------------
Q 014226 322 --------I----KKAILNLSLRHKEHISAYGE--GNERRLTGKHETAS-IDS--------------------------- 359 (428)
Q Consensus 322 --------~----~~fiaGl~L~h~~al~a~~~--nSYkRl~p~~~ap~-~~~--------------------------- 359 (428)
| ...|-++ -++.+-|-+-.+ .+-.||..+ +||. +-.
T Consensus 366 D~PhdN~QFL~Fc~AvIkaV-dkY~~LlRa~~a~AsNDhRLGAN-EAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~ 443 (724)
T COG3968 366 DMPHDNKQFLLFCTAVIKAV-DKYADLLRASAANASNDHRLGAN-EAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGK 443 (724)
T ss_pred CCCCccceeehhhHHHHHHH-HHHHHHHHHHHhccCCccccccC-CCCcceeEeeccchHHHHHHHHhcCCCcccccCcc
Confidence 1 1223344 444444433322 234566543 3442 111
Q ss_pred ------------eeeccCCCcceeeeccCCCCCCccEEEecCCCCC---CCHHHHHHHHHHHhhcC
Q 014226 360 ------------FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASN---MDPYVVTSLLAETTILW 410 (428)
Q Consensus 360 ------------~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~---aNPYLalAaiLaAGl~G 410 (428)
..-|..||+.++-.. +.+||+|.++++ +-|-.+|-+++|--+..
T Consensus 444 mdLg~~vlP~v~kdAgDRNRTSPFAFT-------GNkFEFRavgSSqSvs~P~tVLN~~vAesl~~ 502 (724)
T COG3968 444 MDLGISVLPAVEKDAGDRNRTSPFAFT-------GNKFEFRAVGSSQSVSEPNTVLNVIVAESLSE 502 (724)
T ss_pred cccchhhccccccccccccCCCCceec-------cceeeEecCCcccccccchHHHHHHHHHHHHH
Confidence 123456666665543 468999999876 56899999988876655
No 10
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.50 E-value=3e-14 Score=116.42 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=65.6
Q ss_pred CCEEEEEEEeecCCCCceeeccccCCCC-CCCCc--ccccCCCC-CCCCCCCCceeeeeee--eeecCCCCCC--eEEEE
Q 014226 76 TDKIIAEYIWIGGTGIDMRSKSKPVEHP-SELPK--WNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGN--NILVI 147 (428)
Q Consensus 76 ~~~v~~~~~d~~G~G~~lR~K~vp~~~~-~~l~~--~~fdgs~~-g~~~~~~~D~~l~PD~--~~~~Pw~~~~--~a~Vl 147 (428)
|++|+++|+|+.|. +|++++|++++ ++... .+||||++ ||..+++||++|+||+ ++++||++++ +++|+
T Consensus 2 V~~v~~~f~D~~G~---~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~v~ 78 (84)
T PF03951_consen 2 VKFVDLQFTDLFGR---LKHVTIPASEFDEDALEDGIGFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTARVI 78 (84)
T ss_dssp -EEEEEEEE-TTSS---EEEEEEEGCCESCSGGGS-EEEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEEEE
T ss_pred eEEEEEEEEcCCCC---cceEEEEHHHCCchHhhCCCCCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEEEE
Confidence 77999999999999 99999999998 55543 68999999 9999999999999996 8999999855 99999
Q ss_pred EEEecC
Q 014226 148 CDTYTP 153 (428)
Q Consensus 148 cd~~~~ 153 (428)
||+|+|
T Consensus 79 cdv~~P 84 (84)
T PF03951_consen 79 CDVYDP 84 (84)
T ss_dssp EEEEST
T ss_pred EEeECc
Confidence 999975
No 11
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.63 E-value=1.6e-06 Score=86.27 Aligned_cols=187 Identities=18% Similarity=0.137 Sum_probs=113.5
Q ss_pred eEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCC
Q 014226 181 WFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGP 260 (428)
Q Consensus 181 ~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 260 (428)
.+|+|.||+|.+..... +... .. .+++.++. +..| ..+++|...+|.||+..|
T Consensus 1 t~GvE~E~~lvD~~t~~---------~~~~---------~~---~~~l~~~~---~~~~---~~~~~El~~~qiEi~t~p 53 (287)
T TIGR02050 1 TLGVEEELLLVDPHTYD---------LAAS---------AS---AVLIGACR---EKIG---AGFKHELFESQVELATPV 53 (287)
T ss_pred CceeeeeeeeEcCCccC---------cCcc---------Ch---HHHHHhhh---hhcc---cccChhhhccEEEecCCC
Confidence 37999999999976321 1100 01 14444321 1223 348999999999999999
Q ss_pred C-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---ecccCCCC----------------------CCCCceeeecccccccc
Q 014226 261 S-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIEG----------------------DWNGAGCHTNYSTKSMR 314 (428)
Q Consensus 261 ~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---FmpKP~~~----------------------~~~GsG~H~H~SL~~~~ 314 (428)
+ +.-++.+.+..++..++++|+++|+... +.|..... ...-+|+|+|+++.+.
T Consensus 54 ~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~- 132 (287)
T TIGR02050 54 CTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSP- 132 (287)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCH-
Confidence 7 5777999999999999999999998643 33432100 0124799999999642
Q ss_pred CCCchHHHHHHHHHHHHhHHHHhhcccccc------------cc-----cCCCCCCCCCCCceeec--------------
Q 014226 315 EEGGYETIKKAILNLSLRHKEHISAYGEGN------------ER-----RLTGKHETASIDSFSWG-------------- 363 (428)
Q Consensus 315 ~~~g~~~~~~fiaGl~L~h~~al~a~~~nS------------Yk-----Rl~p~~~ap~~~~~~WG-------------- 363 (428)
. .+-..+..+ ..++|.+.|+++|| || ++ |..- +.+..-+|.
T Consensus 133 ----~-~~i~~~n~l-~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~-p~~G-~p~~f~~~~~y~~~~~~l~~~g~ 204 (287)
T TIGR02050 133 ----D-DAVAVLNRL-LPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAW-PTAG-LPPAFGSWDAFEAYFADLLETGV 204 (287)
T ss_pred ----H-HHHHHHHHH-HHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhC-CCCC-CCCcCCCHHHHHHHHHHHHHcCC
Confidence 1 122233344 67788888887653 32 22 2211 112244453
Q ss_pred cCCCcce---eeeccCCCCCCccEEEecCCCCCCCHH--HHHHHHHHHhh
Q 014226 364 VANRGCS---IRVGRETEKQGKGYLEDRRPASNMDPY--VVTSLLAETTI 408 (428)
Q Consensus 364 ~~NRsa~---iRvp~~~~~~~~~riE~R~~da~aNPY--LalAaiLaAGl 408 (428)
..++... ||... .-.+||+|++|+..++= +++|+++.+-.
T Consensus 205 i~~~~~iww~vRp~~-----~~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv 249 (287)
T TIGR02050 205 IDDDGDLWWDIRPSP-----HFGTVEVRVADTCLNLEHAVAIAALIRALV 249 (287)
T ss_pred cCCCCeeEEEeccCC-----CCCCeeEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 2233333 44322 24689999999988764 44666655544
No 12
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.62 E-value=7.1e-07 Score=91.95 Aligned_cols=132 Identities=20% Similarity=0.167 Sum_probs=89.3
Q ss_pred cceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEe
Q 014226 179 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 258 (428)
Q Consensus 179 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 258 (428)
.+.+|+|.||++++..+. .+. ++ ..++++.+ ... -.-..+..|..-+|.||+.
T Consensus 10 ~~tiGvE~E~~lVD~~t~---------~~~---~~----------~~~vl~~~----~~~-~~~~~i~~El~~~qiEi~t 62 (373)
T PRK13517 10 RPTLGVEWELLLVDPETG---------ELS---PR----------AAEVLAAA----GED-DEGPHLQKELLRNTVEVVT 62 (373)
T ss_pred CCeeEeeeeEeeECCCcC---------CcC---cc----------HHHHHHhc----ccc-cCCCcccccccCCEEEECC
Confidence 569999999999997532 110 10 24444432 110 1134688999999999999
Q ss_pred CCC-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---ecccCCCCC----------------------CCCceeeecccccc
Q 014226 259 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIEGD----------------------WNGAGCHTNYSTKS 312 (428)
Q Consensus 259 ~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---FmpKP~~~~----------------------~~GsG~H~H~SL~~ 312 (428)
.|+ +.-++.+.+...+..++++|+++|+..- ..|...... ..-+|+|+|+++-+
T Consensus 63 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~ 142 (373)
T PRK13517 63 GVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS 142 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC
Confidence 997 5777999999999999999999997643 334321110 02579999999964
Q ss_pred ccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014226 313 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 344 (428)
Q Consensus 313 ~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nS 344 (428)
. ..+-..+..+ ..++|.+.|+++||
T Consensus 143 ~------~~~i~~~n~l-~~~lP~llALsAnS 167 (373)
T PRK13517 143 R------EKVVPVINRL-RPWLPHLLALSANS 167 (373)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 2 1222344556 77888888888654
No 13
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.46 E-value=3.9e-06 Score=86.43 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=87.0
Q ss_pred cceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEe
Q 014226 179 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 258 (428)
Q Consensus 179 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 258 (428)
.+.+|+|.||++.+.... .+... ..+++... ... .-..+++|..-+|.||+.
T Consensus 5 ~~t~GvE~E~~lVD~~t~---------~l~~~-------------~~~~l~~~----~~~--~~~~i~~El~~~qiEi~T 56 (371)
T PRK13515 5 EFTLGIEEEYLLVDPETR---------DLRSY-------------PDALVEAC----RDT--LGEQVKPEMHQSQVEVGT 56 (371)
T ss_pred CCcceEeEeEEEecCCcc---------ccccc-------------HHHHHHhc----hhh--cCCccCcchhccEEEECC
Confidence 468999999999997532 11100 13333321 111 123789999999999999
Q ss_pred CCC-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---ecccCCC------------------C----CCCCceeeecccccc
Q 014226 259 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIE------------------G----DWNGAGCHTNYSTKS 312 (428)
Q Consensus 259 ~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---FmpKP~~------------------~----~~~GsG~H~H~SL~~ 312 (428)
.|+ +.-++.+.+...+..+.++|+++|+... ..|.... + ...-+|+|+|+++-+
T Consensus 57 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d 136 (371)
T PRK13515 57 PVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPD 136 (371)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCC
Confidence 997 5666889999999999999999999763 3333110 0 012359999999964
Q ss_pred ccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014226 313 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 344 (428)
Q Consensus 313 ~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nS 344 (428)
. ..+-.+...+ ..++|.|.|+++||
T Consensus 137 ~------e~~~~~~n~~-~~~lP~llALsanS 161 (371)
T PRK13515 137 R------EDRIDLMNQV-RYFLPHLLALSTSS 161 (371)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 2 2233344455 77788888887765
No 14
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=98.39 E-value=1.3e-05 Score=82.77 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=112.1
Q ss_pred cceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEe
Q 014226 179 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 258 (428)
Q Consensus 179 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 258 (428)
.+.+|+|.||+|.+++.. .+... ..++++.+ .... --+.+++|..-+|.|++.
T Consensus 11 ~~t~GvE~E~~LVD~~t~---------~~~~~-------------~~~vl~~~----~~~~-~~~~v~~El~~~qIEi~T 63 (373)
T PRK13516 11 PFTLGVELELQLVNPHDY---------DLTQD-------------SSDLLRAV----KNQP-TAGEIKPEITESMIEIAT 63 (373)
T ss_pred CCeeEEEEEEEeEcCCCc---------CcCcc-------------HHHHHHhc----cccc-cccccChhhhCceEEEcC
Confidence 459999999999997632 11100 24454432 1100 123588999999999999
Q ss_pred CCC-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---eccc------CCCCC----------------CCCceeeecccccc
Q 014226 259 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPK------PIEGD----------------WNGAGCHTNYSTKS 312 (428)
Q Consensus 259 ~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---FmpK------P~~~~----------------~~GsG~H~H~SL~~ 312 (428)
.|+ +.-++.+.+...+..++++|+++|+..- ..|- +..+. ..-.|+|+|+.+-+
T Consensus 64 ~p~~~~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d 143 (373)
T PRK13516 64 GVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPS 143 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCC
Confidence 998 6667999999999999999999998642 2221 11110 02458999999854
Q ss_pred ccCCCchHHHHHHHHHHHHhHHHHhhccccc------------ccccC----CCCCCCCCCCceeecc------------
Q 014226 313 MREEGGYETIKKAILNLSLRHKEHISAYGEG------------NERRL----TGKHETASIDSFSWGV------------ 364 (428)
Q Consensus 313 ~~~~~g~~~~~~fiaGl~L~h~~al~a~~~n------------SYkRl----~p~~~ap~~~~~~WG~------------ 364 (428)
. -..+ ..+-.+ ..++|.|.|+++| |||-. .|.. .+.|..-+|..
T Consensus 144 ~-----~~av-~~~~~l-~~~lP~llALsAsSPf~~G~dTG~~S~R~~~~~~~P~~-G~pp~~~~~~~y~~~~~~l~~~G 215 (373)
T PRK13516 144 G-----DDAL-YLLHGL-SRYVPHFIALSASSPYVQGVDTGFASARLNSVSAFPLS-GRAPFVLNWQEFEAYFRKMSYTG 215 (373)
T ss_pred H-----HHHH-HHHHHH-HhHhHHHHHHHhCCccccCcCCcchhHHHHHHhcCCCC-CCCCCcCCHHHHHHHHHHHHHcC
Confidence 2 1111 223344 6667888888754 33322 1321 11222445540
Q ss_pred --CCCc---ceeeeccCCCCCCccEEEecCCCCCCCHHHH--HHHHHHH
Q 014226 365 --ANRG---CSIRVGRETEKQGKGYLEDRRPASNMDPYVV--TSLLAET 406 (428)
Q Consensus 365 --~NRs---a~iRvp~~~~~~~~~riE~R~~da~aNPYLa--lAaiLaA 406 (428)
.|.. --||.. +.-..||+|++|...++--+ +|+++.|
T Consensus 216 ~i~d~~~~~WdvRp~-----~~~~TvEiRv~D~~~~~~~~~~iaal~~a 259 (373)
T PRK13516 216 VIDSMKDFYWDIRPK-----PEFGTVEVRVMDTPLTLERAAAIAAYIQA 259 (373)
T ss_pred CcCCCCeeEEEeccC-----CCCCCeEEecCCCCCCHHHHHHHHHHHHH
Confidence 0000 024421 12358999999999999765 4554443
No 15
>PLN02611 glutamate--cysteine ligase
Probab=98.07 E-value=4.9e-05 Score=80.54 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=92.0
Q ss_pred HHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCc---
Q 014226 165 RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGIN--- 241 (428)
Q Consensus 165 ~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~--- 241 (428)
-|-.-++.--.-+=...+|+|+|.++|+..+. .|. +|. -+.++++.+. ...|.+
T Consensus 53 ~lv~~~~~gck~~~~~~iG~E~E~f~~~~~~~---------~pv---~y~--------~i~~lL~~l~---~~~gw~~~~ 109 (482)
T PLN02611 53 DLVAYLASGCKPKEKWRIGTEHEKFGFELATL---------RPM---KYD--------QIAQLLEGLA---ERFGWEKIM 109 (482)
T ss_pred HHHHHHHhcCCCCCCCeeEEeeeeeeccCCCC---------CCC---CHH--------HHHHHHHHHH---HhcCCceec
Confidence 33333433223455679999999999986532 111 221 1345555432 122211
Q ss_pred ---------e--eeccCCCCCCcEEEEeCCC-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---ecccCCCC---------
Q 014226 242 ---------I--SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIEG--------- 297 (428)
Q Consensus 242 ---------v--e~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---FmpKP~~~--------- 297 (428)
- ..+.=|-| ||+|++..|. +.-++++.+...+..++++|+++|+... +.|+....
T Consensus 110 e~g~iIgl~~~g~~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~~~~~i~pk~R 188 (482)
T PLN02611 110 EGDNIIGLKQDGQSVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMPKGR 188 (482)
T ss_pred cCCceecccCCCCceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCccccccCCCChH
Confidence 0 24555777 9999999997 6778999999999999999999999532 33332210
Q ss_pred ----------------CC--CCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014226 298 ----------------DW--NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 344 (428)
Q Consensus 298 ----------------~~--~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nS 344 (428)
+. .-+|+|+|+.+-+. ....+ -+.-+ +.+.|.++|+++||
T Consensus 189 Y~~M~~y~~~~g~~g~~MM~~t~g~QVhvd~~se-----ed~v~-~~~~~-~~l~Pvl~ALfANS 246 (482)
T PLN02611 189 YKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSE-----QDMVR-KFRVG-LALQPIATALFANS 246 (482)
T ss_pred HHHHHHHHHHhhhhhhhhccceEEEEEEecCCCH-----HHHHH-HHHHH-HHHHHHHHHHHhCC
Confidence 01 24789999988652 11222 22333 77788888888654
No 16
>PRK13518 carboxylate-amine ligase; Provisional
Probab=98.06 E-value=0.00011 Score=75.27 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=67.5
Q ss_pred eeccCCCCCCcEEEEeCCC-cHHHHhHHHHHHHHHHHHHHHHcCCeE--------------eecccCC-----C--C---
Q 014226 243 SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL--------------SLDPKPI-----E--G--- 297 (428)
Q Consensus 243 e~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~A--------------TFmpKP~-----~--~--- 297 (428)
+.+++|..-+|.||+..++ +.-++.+++...|..+..+|+++|+.. ..+|||. . +
T Consensus 49 ~~~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~ 128 (357)
T PRK13518 49 GRLDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQ 128 (357)
T ss_pred CcccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccch
Confidence 4689999999999999997 777899999999999999999999953 2334441 0 0
Q ss_pred -CCCCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014226 298 -DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 344 (428)
Q Consensus 298 -~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nS 344 (428)
...-+|+|+|+.+-+. ...+ ..+..+ .-++|.|.|+++||
T Consensus 129 ~~~~~~G~HVHVg~~d~-----d~av-~v~n~l-r~~LP~LlALsAnS 169 (357)
T PRK13518 129 HRNTTAGLHVHVGVDDA-----DKAV-WIANEL-RWHLPILLALSANS 169 (357)
T ss_pred hcceeeEEEEEeCCCCH-----HHHH-HHHHHH-HhHHHHHHHHHcCC
Confidence 0123689999998542 1111 112334 56678899887653
No 17
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=97.52 E-value=0.0018 Score=68.29 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=86.3
Q ss_pred ccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCc-------e------
Q 014226 176 SAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGIN-------I------ 242 (428)
Q Consensus 176 ~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~-------v------ 242 (428)
-+-...+|+|.|-+.|+.++..+ . +|+.-.+ +.++++.|. ...|.+ |
T Consensus 18 ~~~~~~iG~E~E~f~~~~~~~~~---------~---~y~~~~g-----i~~~l~~l~---~~~g~~~~~e~g~~i~l~~~ 77 (446)
T TIGR01436 18 PKEQWRIGTEHEKFGFEKNTLRP---------M---KYEQKGG-----IAELLNGIA---ERFGWQKVMEGDKIIGLKQD 77 (446)
T ss_pred cCCCCceEeeeeeeeeecCCCCC---------C---CCCCchh-----HHHHHHHHH---hhcCCceeccCCceeeecCC
Confidence 35578999999999998764311 1 1211111 345555432 123221 1
Q ss_pred -eeccCCCCCCcEEEEeCCC-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---ecccCCCCC-----------------C-
Q 014226 243 -SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIEGD-----------------W- 299 (428)
Q Consensus 243 -e~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---FmpKP~~~~-----------------~- 299 (428)
..+.-|-| ||+|++..|. +.-++++.+...+..++++|.++|+... +.|+....+ .
T Consensus 78 ~~~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l~~~G~~P~~~~~~~~~~pk~RY~~M~~~~~~~ 156 (446)
T TIGR01436 78 KQSISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGFLGLGFQPKWRREDIPLMPKGRYDIMRNYMPKV 156 (446)
T ss_pred CCeEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEecCCCCCCCcccCCCCCchHHHHHHHHHhhc
Confidence 34455667 9999999998 5777999999999999999999999532 234321100 0
Q ss_pred ---------CCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014226 300 ---------NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 344 (428)
Q Consensus 300 ---------~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nS 344 (428)
.-+|+|+|+.+-+. ....+ -+.-+ +..+|.++|+++||
T Consensus 157 G~~g~~mm~~t~g~qVhld~~~e-----~d~v~-~~~~~-~~l~Pvl~ALfANS 203 (446)
T TIGR01436 157 GKLGLDMMLRTCTVQVNLDFSSE-----ADMVR-KFRAS-LALQPLATALFANS 203 (446)
T ss_pred chHHHHHhHhheeEEEeeCCCCH-----HHHHH-HHHHH-HHHHHHHHHHHhCC
Confidence 03578888876541 11122 22233 67788888888765
No 18
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=97.51 E-value=0.00039 Score=69.19 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=65.4
Q ss_pred eeeccCCCCCCcEEEEeCCC-cHHHHhHHHHHHHHHHHHHHHHcCCeEe---ecc-----------c-------------
Q 014226 242 ISGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDP-----------K------------- 293 (428)
Q Consensus 242 ve~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~AT---Fmp-----------K------------- 293 (428)
-..+++|.--+|.||+..|+ +.-++.+.+..++..+.++|+++|+... +.| |
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 35788999999999999997 5667999999999999999999998742 334 2
Q ss_pred -CCCCCCCCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhccccc
Q 014226 294 -PIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEG 343 (428)
Q Consensus 294 -P~~~~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~n 343 (428)
++.....-+|+|+|+++-+. ....-..+..+ ...+|.+.|+++|
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~-----~e~~v~~~n~~-~~~~P~llALsAN 158 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDG-----DEAAVRVMNAL-RPWLPVLLALSAN 158 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSS-----HHHHHHHHHHH-HTTHHHHHHHH--
T ss_pred hhhhhhhhhcccceEEeCCCc-----cHHHHHHHHHH-HHHhHHHHHHHcC
Confidence 11111123589999999542 22222344555 7788988888764
No 19
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=97.45 E-value=0.0011 Score=68.67 Aligned_cols=93 Identities=17% Similarity=0.058 Sum_probs=64.3
Q ss_pred eccCCCCCCcEEEEeCCC-cHHHHhHHHHHHHHHHHHHHHHcCC-e-Ee-----eccc-CC---CC--------------
Q 014226 244 GTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGV-V-LS-----LDPK-PI---EG-------------- 297 (428)
Q Consensus 244 ~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~K~~ik~vA~~hGl-~-AT-----FmpK-P~---~~-------------- 297 (428)
.+.+|.--.|.|++..++ +.-++.+++...|..+..+|.++|. . +. ||.- ++ .+
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 456688899999999997 6777999999999999999999997 3 21 2221 11 00
Q ss_pred CCCCceeeeccccccccCCCchHHHHHHHHHHHHhHHHHhhccccc
Q 014226 298 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEG 343 (428)
Q Consensus 298 ~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~n 343 (428)
...=+|||+|+.+-|. ...-..+..+ .-++|.|.|+.+|
T Consensus 111 ~~~i~G~HVHVgv~d~------d~av~v~n~l-r~~LP~LlALSAs 149 (376)
T TIGR02048 111 QVVTASVHINIGIPDP------EELMRACRLV-RMEAPLFLALSAS 149 (376)
T ss_pred hheeeEEEEEcCCCCH------HHHHHHHHHH-HHHHHHHHHHhcC
Confidence 0123589999999652 1122344566 7777888877653
No 20
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.0019 Score=65.30 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=110.2
Q ss_pred ceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCceeecc--CCCCCCcEEEE
Q 014226 180 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTN--GEVMPGQWEYQ 257 (428)
Q Consensus 180 ~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h--~E~gpGQ~Ei~ 257 (428)
+..|+|.|||+.++.+. +..+.. ..++++ ..=++..-| +|.--.+.|+.
T Consensus 3 ltlGvE~E~~lvd~~g~------------------dl~~~s----~~ii~~-------~~~~~~~~~~~~e~~e~~vE~~ 53 (369)
T COG2170 3 LTLGVELEFQLVDPQGY------------------DLVGSS----DAIIEA-------LKGKVTAGHLKHEITESTVELA 53 (369)
T ss_pred cccceEEEEEecCCCCc------------------cccccc----HHHHHh-------cCCCCCCcchhHHHHHHhhccc
Confidence 57899999999987631 111111 233332 222222223 55555677888
Q ss_pred eCCCcHH-HHhHHHHHHHHHHHHHHHHcCCeEe-ecccCCCCCC-------------------------CCceeeecccc
Q 014226 258 VGPSVGI-DAGDHIWCSRYLLERITEQAGVVLS-LDPKPIEGDW-------------------------NGAGCHTNYST 310 (428)
Q Consensus 258 l~~~~~l-~aAD~~~~~K~~ik~vA~~hGl~AT-FmpKP~~~~~-------------------------~GsG~H~H~SL 310 (428)
.+++..+ +|+-..--.|..++++|..||+..- =-.-||.+ | .--|.|+|+.+
T Consensus 54 t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfad-w~~~~~~~~prY~~~ie~~~y~~~q~~v~G~HVHVGi 132 (369)
T COG2170 54 TGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFAD-WRRQEVPDNPRYQRLIERTGYLGRQMTVAGQHVHVGI 132 (369)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhh-hhhccCCCChhHHHHHHHhhhHHhheeeeeEEEEecC
Confidence 8887554 4667777889999999999999842 11222221 1 11378999988
Q ss_pred ccccCCCchHHHHHHHHHHHHhHHHHhhccccc------------ccccCC----CCCCCCCCCceeec-----------
Q 014226 311 KSMREEGGYETIKKAILNLSLRHKEHISAYGEG------------NERRLT----GKHETASIDSFSWG----------- 363 (428)
Q Consensus 311 ~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~n------------SYkRl~----p~~~ap~~~~~~WG----------- 363 (428)
-+. + . .-..+-++ +.++|.+.|+.++ |+|+-. |. .-+.|..-+|+
T Consensus 133 ~~~---d--~-~~~~l~~l-~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~-~g~pp~f~sw~~f~~~~~~~~~ 204 (369)
T COG2170 133 PSP---D--D-AMYLLHRL-LRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPT-NGLPPAFQSWAAFEAFFRDQLE 204 (369)
T ss_pred CCH---H--H-HHHHHHHH-HhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCc-CCCCccccCHHHHHHHHHHHHH
Confidence 552 1 1 12345677 9999999999752 444332 11 11112245554
Q ss_pred ---cCCCc---ceeeeccCCCCCCccEEEecCCCCCCCHHHH--HHHHHHHhhcC
Q 014226 364 ---VANRG---CSIRVGRETEKQGKGYLEDRRPASNMDPYVV--TSLLAETTILW 410 (428)
Q Consensus 364 ---~~NRs---a~iRvp~~~~~~~~~riE~R~~da~aNPYLa--lAaiLaAGl~G 410 (428)
.+|.. -.||-. +.=+++|+|++|...||--+ +++++-|-+..
T Consensus 205 tG~I~~~~~lwwdIRPs-----ph~gTlEvRi~D~~~~l~~~~aivaL~~Alv~~ 254 (369)
T COG2170 205 TGTIDSMGDLWWDIRPS-----PHLGTLEVRICDTVLNLAELLAIVALIHALVVW 254 (369)
T ss_pred hcccccccceEEecccC-----CCCCceEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 22222 123322 12378999999999999644 66777665543
No 21
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=96.60 E-value=0.011 Score=61.18 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=58.6
Q ss_pred CcEEEEeCCC-cHHHHhHHHHHHHHHHHHHHHHcCCeE---eeccc---------C--------CC---CC----CCCce
Q 014226 252 GQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL---SLDPK---------P--------IE---GD----WNGAG 303 (428)
Q Consensus 252 GQ~Ei~l~~~-~~l~aAD~~~~~K~~ik~vA~~hGl~A---TFmpK---------P--------~~---~~----~~GsG 303 (428)
||+|++..|. +.-++++.+...+..++++|+++|+.. -+.|+ | +. |. .-.+|
T Consensus 70 gQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~lva~G~~P~~~~~~itpk~RY~~M~~~~~~~~G~~G~~MM~~t 149 (390)
T TIGR03444 70 GQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLALVGLGADPLRPPRRVLPGPRYRAMEQFFATGIGPFGALMMCST 149 (390)
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCCCCCccCCCchHHHHHHHHHhhhccCchHHHHhhCc
Confidence 8999999998 677799999999999999999999963 23343 2 11 10 11468
Q ss_pred eeeccccccccCCCchHHHH-HHHHHHHHhHHHHhhcccccc
Q 014226 304 CHTNYSTKSMREEGGYETIK-KAILNLSLRHKEHISAYGEGN 344 (428)
Q Consensus 304 ~H~H~SL~~~~~~~g~~~~~-~fiaGl~L~h~~al~a~~~nS 344 (428)
+|+|++|-.. .....+. .+-.. ..-.|.++|+++||
T Consensus 150 asVQV~ld~~---~~e~D~~~k~rva--~aL~PvLlALfANS 186 (390)
T TIGR03444 150 ASVQVNLDAG---TDPAEWAERWRLA--HALGPVLIAAFANS 186 (390)
T ss_pred eeEEEccCCC---CCHHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 9999999542 1122232 22221 22278888887654
No 22
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=86.68 E-value=0.13 Score=52.43 Aligned_cols=58 Identities=12% Similarity=-0.092 Sum_probs=48.5
Q ss_pred cccccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 014226 343 GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILW 410 (428)
Q Consensus 343 nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~~~~~~~~riE~R~~da~aNPYLalAaiLaAGl~G 410 (428)
++|+|..+..|- .+||.+|+..+.+ .+ + .+...+|-...+++|||+.++.+.+++.+|
T Consensus 285 s~rh~~hi~~yd-----p~~G~dN~rrltg--~h-E--t~~i~~Fs~GvAnr~~siri~r~va~~~~G 342 (380)
T KOG0683|consen 285 SKRHREHIAAYD-----PKGGKDNERRLTG--RH-E--TGSIDNFSWGVANRNPSIRIPRTVAAEGKG 342 (380)
T ss_pred chhhhhhhhhcC-----ccCCccchhhhcC--CC-c--cccccccccccccCCceeeechhhhccccc
Confidence 789999876544 4699999998888 22 1 357888888889999999999999999999
No 23
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=84.66 E-value=7.8 Score=32.25 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhhcccccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccccCcChhhHHHHHHHHHHHHHHcCCc
Q 014226 162 KRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGIN 241 (428)
Q Consensus 162 PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ 241 (428)
|...-+++++.|++.|..+..-.++||++.-++. +-.+.+...+...|..
T Consensus 2 ~~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~~~------------------------------~~~~~f~~~~~~~g~~ 51 (104)
T PF06877_consen 2 QIIENREVLEALEEDGDDLSKPRPIEHWFYFEDE------------------------------EDAEKFAEELEKLGYE 51 (104)
T ss_dssp HHHHHHHHHHHHHHHT--TTS-EEEEEEEEES-H------------------------------HHHHHHHHHHHHHS--
T ss_pred cHHHHHHHHHHHHhcCCCCCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCE
Confidence 3455678999999999999999999999886541 1122333356789999
Q ss_pred eeeccC--CCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCe
Q 014226 242 ISGTNG--EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 287 (428)
Q Consensus 242 ve~~h~--E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ 287 (428)
|+.... |.+.+.|.+.+.....+... .+.-.-.-+-.+|+++|..
T Consensus 52 v~~~~~~~~d~~~~~~~~~~~~~~~~~~-~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 52 VESAEEDEEDGDGPYCLDISREMVLDYE-DINAITQELEDLAKEFGGE 98 (104)
T ss_dssp -B----B-SS-SSBEEEEEEEEE-S-HH-HHHHHHHHHHHHHHHHT-E
T ss_pred EEEeecccCCCCceEEEEEEEecCCCHH-HHHHHHHHHHHHHHHhCcE
Confidence 998775 77889999999876665433 3333344556777777754
No 24
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=80.25 E-value=3.6 Score=32.25 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCceeeccCCCCC------CcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 014226 226 DIADAHYKACLYAGINISGTNGEVMP------GQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 292 (428)
Q Consensus 226 ~i~~~l~~~l~~~Gi~ve~~h~E~gp------GQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmp 292 (428)
.++..+.+.|.+.|++|..+..+.-+ ++|.+.+.-.-+ ...| .-.++.-++++|++.|+..+|-|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~~-~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGTD-LDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCCC-HHHHHHHHHHHHHHhcceEEecC
Confidence 35555666788999999999776654 778655544322 1122 45778999999999999988754
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=73.35 E-value=7.4 Score=30.57 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEee
Q 014226 226 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSL 290 (428)
Q Consensus 226 ~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATF 290 (428)
.++.++.+.|.+.|.+|+.++.-.-.|+|-+.+.-.-+ .|+.-.++..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 45566666788999999999999989999887776544 557778899999999999999875
No 26
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=71.47 E-value=5.4 Score=41.51 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=35.8
Q ss_pred ccCCCCCCcEEEEeCCCcHHH-HhHHHHHHHHHHHHHHHHcCCeEee
Q 014226 245 TNGEVMPGQWEYQVGPSVGID-AGDHIWCSRYLLERITEQAGVVLSL 290 (428)
Q Consensus 245 ~h~E~gpGQ~Ei~l~~~~~l~-aAD~~~~~K~~ik~vA~~hGl~ATF 290 (428)
+.-|.| ||||+...|.+.+. .|-..-.--.+||++|...|+...+
T Consensus 91 IslEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG 136 (456)
T COG3572 91 ISLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG 136 (456)
T ss_pred EEeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 445777 99999999987655 6666666778999999999988654
No 27
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=70.55 E-value=43 Score=32.08 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.7
Q ss_pred cEEEecCCCCCCCHHHHHHHH
Q 014226 383 GYLEDRRPASNMDPYVVTSLL 403 (428)
Q Consensus 383 ~riE~R~~da~aNPYLalAai 403 (428)
.-||+|.+.++-++--+.+.+
T Consensus 225 ~TvEFR~~~~s~d~~~~~~wi 245 (252)
T PF12224_consen 225 PTVEFRQPNGSLDAEEISAWI 245 (252)
T ss_pred CeEEEecCCCCCCHHHHHHHH
Confidence 489999999999998776554
No 28
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=69.56 E-value=11 Score=42.72 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.5
Q ss_pred cceEeeeeeEEEecCC
Q 014226 179 VPWFGIEQEYTLLQQN 194 (428)
Q Consensus 179 ~~~~g~E~EF~L~~~~ 194 (428)
...+|+|-|+.+++.+
T Consensus 18 ~~~~GiE~E~lrVd~~ 33 (752)
T PRK02471 18 QANFGLEKESLRVDSD 33 (752)
T ss_pred cCCcceEeeeeEECCC
Confidence 6789999999999986
No 29
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.12 E-value=9.5 Score=30.69 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 014226 226 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 293 (428)
Q Consensus 226 ~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpK 293 (428)
.++.++.+.|.+.|++|..++.....|+|.+.+.-.-+ ...++.-.++..+++++.+.|+..++-+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 45566666788999999999998888888776654422 11345668899999999999999988553
No 30
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.22 E-value=15 Score=28.62 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 014226 226 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 292 (428)
Q Consensus 226 ~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmp 292 (428)
-++.++.+.|.+.|++|+.++.-.-.|+|-+.+.-.-+ ...+.-.++..+..+++++|+.+++-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 45666667788999999999777777877776543321 111355679999999999999988643
No 31
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=61.49 E-value=7.4 Score=39.90 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 014226 222 SFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 293 (428)
Q Consensus 222 ~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpK 293 (428)
.|.+.++..+. ++.-||=-.+..|. -+|.++.+|+-+|++|.+.|+..||||-
T Consensus 250 Gf~rAMvKtMt---~alkiPHF~y~dEI----------------n~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 250 GFSRAMVKTMT---EALKIPHFGYVDEI----------------NCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred hHHHHHHHHHH---HHhcCCcccccccc----------------ChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 35566666553 45566655555542 3799999999999999999999999995
No 32
>PRK00194 hypothetical protein; Validated
Probab=60.40 E-value=16 Score=29.27 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 014226 226 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 291 (428)
Q Consensus 226 ~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFm 291 (428)
.++.++.+.|.+.|++|..++.....|.|.+.+.-.-+ ...++.-.++..+++++.+.|+..+|-
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~ 79 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQ 79 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 45555666788999999999999888888874332211 112334567888999999999999884
No 33
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=55.39 E-value=35 Score=26.80 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 014226 225 RDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 291 (428)
Q Consensus 225 ~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFm 291 (428)
.-++.++.+.|.+.|.+|.....-.-.|+|-+-+....+ .+..-.++..++.+|+++|+.++.+
T Consensus 12 ~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 12 PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 356667777889999999999888888888776665533 1345677889999999999987653
No 34
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=52.28 E-value=51 Score=32.38 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHH---HHHHH
Q 014226 250 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYET---IKKAI 326 (428)
Q Consensus 250 gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~---~~~fi 326 (428)
-|.+.=|+|.|.+++.- +.++.+=..+|++-.+.|+.+ | ||- .-|.|+|+.+-|... -+... |-+++
T Consensus 113 ~PD~lvfDLDP~~~~~f-~~v~~~A~~~r~~L~~lgL~~-f-~KT----SG~kGlHV~vPl~~~---~~~~~~r~fa~~i 182 (245)
T TIGR02778 113 KPDRIVFDLDPGPGVAW-KLVVEAAQLIRELLDELGLES-F-VKT----SGGKGLHVYVPLRPT---LSWDEVKDFAKAL 182 (245)
T ss_pred CCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eEc----cCCCeEEEEEECCCC---CCHHHHHHHHHHH
Confidence 58999999999987643 344455566899999999874 3 662 147899999999653 22333 34555
Q ss_pred HHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 327 LNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 327 aGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
|-.+-+..|++.-.. -.|....| ..++.|..|+|...+=-|.+
T Consensus 183 A~~l~~~~Pd~~t~~--~~k~~R~g-----kvfiDylqN~~g~T~vapYS 225 (245)
T TIGR02778 183 AQALAQQMPDRFTAE--MSKKNRVG-----KIFVDYLRNARGKTTVAPYS 225 (245)
T ss_pred HHHHHHHCchhhhhH--hhHHhCCC-----CEEEECccCCCCCeEEeccc
Confidence 554233345544332 22222222 12888888888866655543
No 35
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=45.87 E-value=26 Score=34.56 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=25.9
Q ss_pred cHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeecccccc
Q 014226 262 VGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS 312 (428)
Q Consensus 262 ~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~ 312 (428)
+|.+..+++........+.....++.--==..|+.+ + --|.|+|+|-..
T Consensus 60 ~P~~L~~~i~~~l~~A~~~i~~~~l~W~AG~mP~~g-f-p~GGHiHfsgv~ 108 (261)
T PF14395_consen 60 DPAELFENIRRALREAARRIPDRSLEWLAGSMPFPG-F-PLGGHIHFSGVP 108 (261)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEecCCCCCCC-C-CcCCeEEecCCC
Confidence 566666666444444433333333332112345555 2 468999997643
No 36
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=45.29 E-value=22 Score=29.11 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCceeeccCCCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeE
Q 014226 225 RDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVL 288 (428)
Q Consensus 225 ~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~A 288 (428)
.+.+....+.+.+.|++++-+..|+--..--+.+-|. ||+-+-||.++|++++.++..+
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RI 83 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRI 83 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceE
Confidence 4555555556789999999999999887788888887 8889999999999999998765
No 37
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=44.41 E-value=92 Score=30.34 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred CCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHH---HHH
Q 014226 248 EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYET---IKK 324 (428)
Q Consensus 248 E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~---~~~ 324 (428)
..-|-+.=|+|.|.+++.-. .++-.=..+|++-.+.|+.. | ||- .-|.|+|+.+-|... -+... |-+
T Consensus 99 ~e~PD~~vfDLDP~~~~~f~-~v~~~A~~~r~~L~~lgL~s-~-~KT----SG~kGlHV~vPl~~~---~~~~~vr~fa~ 168 (231)
T cd04863 99 PGPPDRLVFDLDPGEPAGLV-ECARVALWLRDRLAALGLAS-F-PKT----SGSKGLHLYVPLDGP---VSSDQTKEFAK 168 (231)
T ss_pred CCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCcc-c-eEC----CCCCeEEEEEEcCCC---CCHHHHHHHHH
Confidence 34699999999999875433 34455556889999999874 3 662 247899999999653 22333 344
Q ss_pred HHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 325 AILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 325 fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
++|-.+-+..|++.-. +--|.-..| ..++.|..|+|...+=-|.+
T Consensus 169 ~~A~~l~~~~P~~~t~--~~~k~~R~g-----rvfiDylqN~~g~T~vapYS 213 (231)
T cd04863 169 ALARELEREHPDLVVS--RMTKSLRAG-----KVFVDWSQNDAAKTTIAPYS 213 (231)
T ss_pred HHHHHHHHHCchhhhh--HhhHhhCCC-----cEEEECccCCCCCeEEeccc
Confidence 5555423344555442 222222222 12788888888866655543
No 38
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=40.73 E-value=2e+02 Score=27.90 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=69.0
Q ss_pred CCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccc-cccCCCchHHHH---H
Q 014226 249 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK-SMREEGGYETIK---K 324 (428)
Q Consensus 249 ~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~-~~~~~~g~~~~~---~ 324 (428)
--|.+.=|+|.|.+++.- ++++-+=..+|++-.+.|+.. | ||- .-|.|+|+.+-|. .. .+....+ +
T Consensus 91 e~PD~lvfDLDP~~~~~f-~~v~~~A~~vr~~L~~lgL~~-f-~KT----SG~kGlHV~vPl~~~~---~~~~~~r~fa~ 160 (223)
T cd04866 91 NKPSEIVFDLDPPSRDHF-SLAVEAANLLKEILDALGLTS-F-VKT----SGNKGLQVYIPLPDNK---FTYDETRLFTE 160 (223)
T ss_pred CCCCeEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eEc----cCCCeEEEEEEcCCCC---CCHHHHHHHHH
Confidence 369999999999977533 444566678889999999874 3 662 1478999999997 32 2233344 4
Q ss_pred HHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 325 AILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 325 fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
++|-.+-+..|++.-. +-.|....| ..++.|..|+|...+=-|.+
T Consensus 161 ~iA~~l~~~~P~~~t~--~~~k~~R~g-----kVfiDylqN~~g~T~vapYS 205 (223)
T cd04866 161 FIAEYLCQQFPELFTT--ERLKKNRHN-----RLYLDYVQHAEGKTIIAPYS 205 (223)
T ss_pred HHHHHHHHHCchhhhH--HhhHHhCCC-----CEEEECccCCCCCeEEeccc
Confidence 4444423333444332 222222232 12888888888877655543
No 39
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=38.36 E-value=60 Score=24.78 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=30.7
Q ss_pred HHHHHHHcCCceeeccCCCCCCcEEEEeCCC--cHHHHhHHHHHHHHHHHHHHHHcCC
Q 014226 231 HYKACLYAGINISGTNGEVMPGQWEYQVGPS--VGIDAGDHIWCSRYLLERITEQAGV 286 (428)
Q Consensus 231 l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~--~~l~aAD~~~~~K~~ik~vA~~hGl 286 (428)
+.+.|..+|++++.. + ..+++++...+- |.+.. -.++.+||+-+|+
T Consensus 24 i~~~L~~lg~~~~~~--~-~~~~~~v~~P~~R~Di~~~-------~DliEei~r~~Gy 71 (71)
T smart00874 24 IEEILKRLGFEVEVS--G-DDDTLEVTVPSYRFDILIE-------ADLIEEVARIYGY 71 (71)
T ss_pred HHHHHHHCCCeEEec--C-CCCeEEEECCCCccccCcc-------cHHHHHHHHHhCC
Confidence 445678999999651 1 135688777654 44444 4578899998886
No 40
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=38.35 E-value=16 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHcCCceeeccCCCCCCcEEEEeCC
Q 014226 236 LYAGINISGTNGEVMPGQWEYQVGP 260 (428)
Q Consensus 236 ~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 260 (428)
.++|-+||++.-+ +|||||||+.-
T Consensus 55 ~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 55 GAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred hcccCcceEEEEe-cCceEEEehhh
Confidence 4678788888776 89999999853
No 41
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=37.82 E-value=1.3e+02 Score=29.25 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHHHHHHHHHH
Q 014226 250 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNL 329 (428)
Q Consensus 250 gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl 329 (428)
-|.+.=|+|.|.+++.- +.++-+=..+|++-.+.||.+ | ||-. -|.|+|+.+-|....+-+....|-+++|-.
T Consensus 97 ~PD~lvfDLDP~~~~~f-~~v~~~A~~vr~~L~~lgL~~-f-~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~ 169 (227)
T cd04861 97 RPDRLVFDLDPGPGVPF-EDVVEAALLLRELLDELGLES-F-PKTS----GGKGLHVYVPLAPRYTWDEVRAFAKALARE 169 (227)
T ss_pred CCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58999999999987643 344555667888888999874 3 6621 478999999996531111123344555555
Q ss_pred HHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 330 SLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 330 ~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
+-+..|++.-.. -.|....| ..++.|..|+|...+=-|.+
T Consensus 170 l~~~~P~~~t~~--~~k~~R~g-----rvfiDy~qN~~g~T~vapYS 209 (227)
T cd04861 170 LARRLPDLFTAE--MAKAKRGG-----KIFVDYLQNARGKTTVAPYS 209 (227)
T ss_pred HHHHCchhhhhH--hhHHhCCC-----CEEEECccCCCCCeEEeccc
Confidence 233445554332 22222222 12788888888776655543
No 42
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=37.57 E-value=82 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHhhhcccccceEeeeeeEEE
Q 014226 161 NKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 190 (428)
Q Consensus 161 ~PR~~Lkr~l~~l~~~G~~~~~g~E~EF~L 190 (428)
=||..++.++..|.+. |+|+||.-
T Consensus 33 mPrRT~Qd~i~aL~~~------~I~~~Fvq 56 (90)
T PF09904_consen 33 MPRRTIQDTIKALPEL------GIECEFVQ 56 (90)
T ss_dssp --HHHHHHHHHGGGGG------T-EEEEE-
T ss_pred CCHhHHHHHHHHhhcC------CeEEEEEe
Confidence 3899999999998754 56677744
No 43
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.26 E-value=73 Score=24.43 Aligned_cols=60 Identities=12% Similarity=-0.068 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCceeeccCC--CCCCcEEEEeCCCcHHHHh-HHHHHHHHHHHHHHHHcCCe
Q 014226 226 DIADAHYKACLYAGINISGTNGE--VMPGQWEYQVGPSVGIDAG-DHIWCSRYLLERITEQAGVV 287 (428)
Q Consensus 226 ~i~~~l~~~l~~~Gi~ve~~h~E--~gpGQ~Ei~l~~~~~l~aA-D~~~~~K~~ik~vA~~hGl~ 287 (428)
-++..+.+.+.+.|++|..++.. ...+.|.+.+.-..+ .. .+.-.++..+..+|.+.|+.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 45566666788999999999776 466677665553322 21 13557788889999887753
No 44
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=34.76 E-value=1.5e+02 Score=28.85 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHHHHHHHHHH
Q 014226 250 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNL 329 (428)
Q Consensus 250 gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaGl 329 (428)
-|.+.=|+|.|.+++.- +.++.+=..+|++..+.|+.+ | ||- .-|.|+|+.+-|....+-+....|-+++|-.
T Consensus 98 ~PD~lvfDLDP~~~~~f-~~v~~~A~~vr~~L~~lgL~s-f-~KT----SG~kGlHv~vPl~~~~~~~~~r~fa~~iA~~ 170 (228)
T cd04865 98 HPDELVIDLDPQPGTSF-EDVVEVALLVREVLDELGLRG-Y-PKT----SGARGLHIYVPIAPRYTFEEVRRFAELLARE 170 (228)
T ss_pred CCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eEc----cCCCeEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58999999999977543 445566677889999999884 3 662 1478999999996531101123344555555
Q ss_pred HHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 330 SLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 330 ~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
+-+..|++.-. +-.|.-..| ..++.|..|+|...+=-|.+
T Consensus 171 l~~~~P~~~t~--~~~k~~R~g-----rvfiDylqN~~g~T~vapYS 210 (228)
T cd04865 171 VERRLPDLATT--ERWKKERGG-----RVYLDYLQNARGKTLAAPYS 210 (228)
T ss_pred HHHHCchhhhh--HhhHHhCCC-----CEEEECccCCCCCeEEeccc
Confidence 23333554333 222222222 12788888888866555543
No 45
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=34.20 E-value=1.6e+02 Score=28.63 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHHHHHHHHH
Q 014226 249 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILN 328 (428)
Q Consensus 249 ~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~~~~fiaG 328 (428)
.-|.+.=|+|.|.+++.- ++++.+=..+|++-.+.|+.+ .||- .-|.|+|+.+-|....+-+....|-+++|-
T Consensus 96 e~PD~lvfDLDP~~~~~f-~~v~~~A~~~r~~L~~lgL~~--~~KT----SG~kGlHV~vPl~~~~~~~~~r~fa~~lA~ 168 (227)
T cd04862 96 ERPDRIVFDLDPGPGVPW-KAVVEAALLVRELLDELGLES--FVKT----SGGKGLHVVVPLAPRAGWDEVKAFAKALAQ 168 (227)
T ss_pred CCCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc--ceEc----cCCCeEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468999999999987543 334556677888889999874 3662 147899999999653110112334455555
Q ss_pred HHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 329 LSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 329 l~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
.+-+..|++.-.. --|....| ..++.|..|+|...+=-|.+
T Consensus 169 ~l~~~~P~~~t~~--~~k~~R~g-----kvfiDylqN~~g~T~vapYS 209 (227)
T cd04862 169 HLARTNPDRFVAT--MGKAKRVG-----KIFIDYLRNGRGATAVAPYS 209 (227)
T ss_pred HHHHHCchhhhHH--hhHHhCCC-----cEEEECccCCCCCeEEeccc
Confidence 4233335543332 22333333 12888988888876655543
No 46
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=32.97 E-value=1.7e+02 Score=28.51 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeeccccccccCCCchHH---HHH
Q 014226 248 EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYET---IKK 324 (428)
Q Consensus 248 E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~~~~~~g~~~---~~~ 324 (428)
..-|-+.=|+|.|. +. .=++++.+=..+|++-.+.|+.+ .||-. -|.|+|+.+-|... -+... |-+
T Consensus 97 ~e~PD~~vfDLDP~-~~-~f~~v~~~A~~~r~~L~~~gL~~--f~KTS----G~kGlHv~vPl~~~---~~~~~~r~fa~ 165 (228)
T cd04864 97 LEHPDLMVFDLDPS-AD-DIEAVRTAALAVRELLDELGLPS--FVKTT----GSRGFHVVVPLDGR---GDFDDVRAFAA 165 (228)
T ss_pred CCCCCEEEEecCCC-CC-CHHHHHHHHHHHHHHHHHcCCcc--ceEcc----CCCeEEEEEEcCCC---CCHHHHHHHHH
Confidence 34689999999998 44 55667777888999999999984 36622 47899999999653 22333 445
Q ss_pred HHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 014226 325 AILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 376 (428)
Q Consensus 325 fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~~ 376 (428)
++|-.+-+..|.+.-. .-.|....| ..++.|..|+|...+=-|.+
T Consensus 166 ~lA~~l~~~~P~~~t~--~~~k~~R~g-----rvfiDylqN~~g~T~vapYS 210 (228)
T cd04864 166 EAADALAKRDPDLLTT--EARKAKRGD-----RVFLDIGRNAYGQTAVAPYA 210 (228)
T ss_pred HHHHHHHHHCchhhhH--HhhHHhCCC-----cEEEECccCCCCCeEEeccc
Confidence 5555423344554333 223333333 12888888888866655543
No 47
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=30.13 E-value=1.2e+02 Score=23.31 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCceeeccCCCCCCcEEEEeCCC--cHHHHhHHHHHHHHHHHHHHHHcCC
Q 014226 230 AHYKACLYAGINISGTNGEVMPGQWEYQVGPS--VGIDAGDHIWCSRYLLERITEQAGV 286 (428)
Q Consensus 230 ~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~--~~l~aAD~~~~~K~~ik~vA~~hGl 286 (428)
++.+.|+.+|+.++.. ....+++...+- |....+| ++-+||+-||+
T Consensus 23 ~i~~~L~~lg~~~~~~----~~~~~~v~vP~~R~Di~~~~D-------liEEiaR~yGY 70 (70)
T PF03484_consen 23 EIIKILKRLGFKVEKI----DGDTLEVTVPSYRFDIEHEED-------LIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHTT-EEEE-----CTTEEEEEEETTSTT-SSHHH-------HHHHHHHHHTG
T ss_pred HHHHHHHHCCCEEEEC----CCCEEEEEcCCCcCCcCcccH-------HHHHHHHHhCC
Confidence 3444688999999876 667888888763 6666665 67888888885
No 48
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=27.64 E-value=1e+02 Score=30.83 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCceeeccCC--CCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 014226 225 RDIADAHYKACLYAGINISGTNGE--VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 291 (428)
Q Consensus 225 ~~i~~~l~~~l~~~Gi~ve~~h~E--~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFm 291 (428)
--|+.++.+.|.+.|++|+.+... .+.++|.+.+.-..+ +....-.+++.+..+|.+.|+.++.-
T Consensus 18 pGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~ 84 (286)
T PRK13011 18 AGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELH 84 (286)
T ss_pred CCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEe
Confidence 456777777889999999999985 678899886554312 12236678999999999999887765
No 49
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.73 E-value=1.6e+02 Score=21.21 Aligned_cols=49 Identities=18% Similarity=0.022 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCceeeccCCCC--CCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCe
Q 014226 224 GRDIADAHYKACLYAGINISGTNGEVM--PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 287 (428)
Q Consensus 224 ~~~i~~~l~~~l~~~Gi~ve~~h~E~g--pGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ 287 (428)
+.++.+ .+.+.|++|.++++... .|...+.+.-.+ ..-+++.-+++|+.
T Consensus 13 L~~i~~----~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~ 63 (65)
T cd04882 13 LHEILQ----ILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVE 63 (65)
T ss_pred HHHHHH----HHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCce
Confidence 345554 46789999976654222 355555555444 23445555667764
No 50
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.48 E-value=50 Score=31.72 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=24.6
Q ss_pred cCCCCCCCCCH---HHHHHHHHHhhhcccccceE
Q 014226 152 TPAGEPIPTNK---RHRAAEIFSNSKVSAEVPWF 182 (428)
Q Consensus 152 ~~dG~P~~~~P---R~~Lkr~l~~l~~~G~~~~~ 182 (428)
++-|+|+-.|| |..|+++..+|.++||.+.+
T Consensus 173 Wplge~VKLD~TvDR~~lR~q~~rLg~LGY~~d~ 206 (214)
T PF11679_consen 173 WPLGEPVKLDPTVDRRRLRQQRARLGQLGYAFDF 206 (214)
T ss_pred ccCCCceeccCccCHHHHHHHHHHHHhcCeeecc
Confidence 45677776654 99999999999999987543
No 51
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=23.61 E-value=56 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=20.9
Q ss_pred cCCCcceeeeccCCCCCCccEEEecCCCC
Q 014226 364 VANRGCSIRVGRETEKQGKGYLEDRRPAS 392 (428)
Q Consensus 364 ~~NRsa~iRvp~~~~~~~~~riE~R~~da 392 (428)
..|||-+||+|..-.-+ ..++|+++-|.
T Consensus 7 ~snrSQAVRLP~e~~f~-~~~VeI~r~G~ 34 (74)
T COG4456 7 RSNRSQAVRLPKEFRFP-EDRVEIIREGD 34 (74)
T ss_pred ecCCeeeEecchheecC-CcEEEEEEeCC
Confidence 57999999999864332 37888877664
No 52
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.50 E-value=1.8e+02 Score=29.05 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCceeeccCCC--CCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 014226 225 RDIADAHYKACLYAGINISGTNGEV--MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 292 (428)
Q Consensus 225 ~~i~~~l~~~l~~~Gi~ve~~h~E~--gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmp 292 (428)
--|+.++.+.|.+.|++|+.++... ..|+|.+.+.-.-- ...+..-.+++.+.+++++.|+.+++..
T Consensus 17 pGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~l~l~i~l~~ 85 (286)
T PRK06027 17 PGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIFNLETLRADFAALAEEFEMDWRLLD 85 (286)
T ss_pred CcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHhCCEEEEcc
Confidence 3566677778899999999998887 77788775543210 1112255779999999999999987654
No 53
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=21.76 E-value=39 Score=29.99 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=14.1
Q ss_pred cCCceeeccCCCCCCcEEEEeC
Q 014226 238 AGINISGTNGEVMPGQWEYQVG 259 (428)
Q Consensus 238 ~Gi~ve~~h~E~gpGQ~Ei~l~ 259 (428)
.+-.||++.-. +||||||||.
T Consensus 82 ~~~~iESIrI~-~pG~YElNL~ 102 (131)
T PF09845_consen 82 LNDRIESIRIL-EPGSYELNLE 102 (131)
T ss_pred cccCcceEEEe-cCceEEecHH
Confidence 34455555443 8999999974
No 54
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=20.17 E-value=2.8e+02 Score=30.51 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCCCcEEEEeCCCcHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCCCCCCCCceeeecccccc-ccCCCchHHHH---H
Q 014226 249 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS-MREEGGYETIK---K 324 (428)
Q Consensus 249 ~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~vA~~hGl~ATFmpKP~~~~~~GsG~H~H~SL~~-~~~~~g~~~~~---~ 324 (428)
.-|.+.=|+|.|.+++.- +.++.+=..+|++-.+.|+.+ | ||-. -|.|+|+.+-|.. . .+....+ +
T Consensus 389 ~~Pd~~v~DLDP~~~~~f-~~v~~~A~~~r~~L~~~gl~~-~-~KtS----G~kGlhv~vPl~~~~---~~~~~~~~fa~ 458 (552)
T TIGR02776 389 DKPDRIVFDLDPPPGVAF-KLAVEAAQLMKQLLDELGLVS-F-VKTS----GGKGLHVVVPLRPNT---FTWDETKLFAK 458 (552)
T ss_pred CCCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eEcc----CCCeEEEEEEcCCCC---CCHHHHHHHHH
Confidence 368999999999877533 444455566888999999874 3 6622 4789999999975 2 2333334 4
Q ss_pred HHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 014226 325 AILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGR 375 (428)
Q Consensus 325 fiaGl~L~h~~al~a~~~nSYkRl~p~~~ap~~~~~~WG~~NRsa~iRvp~ 375 (428)
+||-.+-+..|++.-.. -.|.-..| ..++.|..|+|...+=-|.
T Consensus 459 ~~a~~~~~~~P~~~t~~--~~k~~R~g-----rv~iDy~qn~~~~T~~apY 502 (552)
T TIGR02776 459 AIAEYLARQFPERFTTE--MGKKNRVG-----RIFIDYLRNARGKTTVAPY 502 (552)
T ss_pred HHHHHHHHHCcceehhh--hhHhhCCC-----CEEEEcccCCCCCeEEecc
Confidence 45544233335443332 22222222 1277777777775554443
Done!