RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014226
(428 letters)
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 568 bits (1467), Expect = 0.0
Identities = 275/354 (77%), Positives = 317/354 (89%), Gaps = 4/354 (1%)
Query: 63 RLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQ 118
L DL+NL+++ T+KIIAEYIWIGG+G+D+RSK++ PV PS+LPKWNYDGSSTGQ
Sbjct: 3 CLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQ 62
Query: 119 APGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAE 178
APGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE
Sbjct: 63 APGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAE 122
Query: 179 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYA 238
PW+GIEQEYTLLQ++ WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYA
Sbjct: 123 EPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYA 182
Query: 239 GINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGD 298
GINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GD
Sbjct: 183 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGD 242
Query: 299 WNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASID 358
WNGAG HTNYST+SMR+EGGYE IK AI L LRHKEHI+AYGEGNERRLTG+HETA I+
Sbjct: 243 WNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADIN 302
Query: 359 SFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 412
+FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct: 303 TFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
GENO structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 537 bits (1385), Expect = 0.0
Identities = 184/346 (53%), Positives = 239/346 (69%), Gaps = 11/346 (3%)
Query: 74 PYTDKIIAEYIWIGGTGIDMRSKSK----PVEHPSELPKWNYDGSSTGQAPGEDSEVILY 129
P +K+ A YIWI GTG +R K++ + ELP+WN+DGSST Q+ G +S++ L
Sbjct: 40 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLV 99
Query: 130 PQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYT 189
P A+F+DPFR N LV+C+ + P TN RH I VS + PWFG+EQEYT
Sbjct: 100 PAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMD--MVSNQHPWFGMEQEYT 157
Query: 190 LLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEV 249
L+ + P GWP +PGPQGPYYCG GAD+++GRDI +AHY+ACLYAG+ I+GTN EV
Sbjct: 158 LMGTD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEV 216
Query: 250 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 309
MP QWE+Q+GP GI GDH+W +R++L R+ E GV+ + DPKPI G+WNGAGCHTN+S
Sbjct: 217 MPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFS 276
Query: 310 TKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWGVA 365
TK+MREE G + I++AI LS RH+ HI AY G N RRLTG HET++I+ FS GVA
Sbjct: 277 TKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVA 336
Query: 366 NRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 411
NR SIR+ R ++ KGY EDRRP++N DP+ VT L T +L E
Sbjct: 337 NRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 382
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 523 bits (1348), Expect = 0.0
Identities = 191/349 (54%), Positives = 240/349 (68%), Gaps = 11/349 (3%)
Query: 64 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKPVE----HPSELPKWNYDGSSTGQA 119
L+ L LD +IIAEY+WI GTG ++RSK + ++ +LP+WN+DGSST QA
Sbjct: 12 LQKYLELDQR---GRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQA 67
Query: 120 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 179
PG DS++ L P A + DPFR G+NI+V+ Y G P N RH AA++F+ E
Sbjct: 68 PGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFA--AHKDEE 125
Query: 180 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 239
WFG+EQEYTL GWP G YP PQGPYYCG GA K + RD+ +AHY+ACLYAG
Sbjct: 126 IWFGLEQEYTLFD-MYDDVYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAG 184
Query: 240 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 299
+ ISG N EVMP QWE+QVGP GID GD +W +RY L R+ E+ G+ +S PKP++GDW
Sbjct: 185 LEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDW 244
Query: 300 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDS 359
NGAGCH N STK MR+ GG + I++AI LS RH EHI YG N+ RLTG+HETAS+ +
Sbjct: 245 NGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTA 304
Query: 360 FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTI 408
FS GVANRG SIR+ R K+G GY EDRRPASN+DPY+VT ++ ET
Sbjct: 305 FSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVC 353
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 61.4 bits (150), Expect = 2e-10
Identities = 55/339 (16%), Positives = 98/339 (28%), Gaps = 64/339 (18%)
Query: 92 DMRSKSKPVE-HPSELPK------WNYDGSS-TGQAPGEDSEVILYPQA--IFKDPFRGG 141
D S+ K + DG G A S+++L P+
Sbjct: 23 DAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAAAA 82
Query: 142 NNILVICDTYTP-AGEPIPTNKRH--RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWP 198
VICD A P R+ RAA + +A ++ + +
Sbjct: 83 ATAAVICDGGAAAAASP-----RYIARAALAQLQAAGAAAGLLSAFIADFCIFGV-PEVI 136
Query: 199 LGWPVGAYPGPQGPYYCGAGADKS--FGRDIADAHYKACLYA-GINISGTNGEVMPGQWE 255
+ + + + ++ A A G G G E
Sbjct: 137 N---------SKTISFPASTTAAAADQPQEAAA------GGAAGAAAGAAGGAAAAGAAE 181
Query: 256 YQVGP-SVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS----- 309
P + G A D+ + R L+ + + + S GAG H+ +
Sbjct: 182 ICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAAAAAA-AGAGSHSIWDVGAAG 240
Query: 310 TKSMREEGGY---ETIKKAILNLSLRHKEHISA--------YGEGNERRLTGKHETASID 358
T + G T K + L L +A A+
Sbjct: 241 TNAFAGASGARATLTGAKWLAGL-LAAAAAAAAAAAAAAAAA-----AAAAAGAA-AAA- 292
Query: 359 SFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPY 397
+ +WG A C++ + +G +E++ A+ +PY
Sbjct: 293 ATAWGAAAAACALNIAAAAAAKGA-QIENKAGAAAANPY 330
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 57.3 bits (138), Expect = 5e-09
Identities = 45/243 (18%), Positives = 77/243 (31%), Gaps = 48/243 (19%)
Query: 110 NYDGSSTGQAPG-----EDSEVILYPQAIFKDPF-------RGGNNILVICDTYTPAGEP 157
DG + G ++ + +P ++ F G++ + DT
Sbjct: 109 GEDGEVIERFSGKLLIQQEPDASSFPNGGIRNTFEARGYTAWDGSSPAFVVDTTLCIPTI 168
Query: 158 ------------IPTNKRHRAAEI-------FSNSKVSAEVPWFGIEQEYTLL-----QQ 193
P K A + + ++ G EQEY L+
Sbjct: 169 FISYTGEALDYKTPLLKALAAVDKAATEVCQLFDKNITRVFTNLGWEQEYFLVDTSLYNA 228
Query: 194 NVKWPLGWPV-----GAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTN 246
L A +Y G+ + +F +++ +K GI + +
Sbjct: 229 RPDLRLTGRTLMGHSSAKDQQLEDHYFGSIPPRVTAFMKELEIECHKL----GIPVKTRH 284
Query: 247 GEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHT 306
EV P Q+E A DH L++RI + + KP G NG+G H
Sbjct: 285 NEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNGV-NGSGKHN 343
Query: 307 NYS 309
N+S
Sbjct: 344 NWS 346
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 54.4 bits (132), Expect = 3e-08
Identities = 80/344 (23%), Positives = 123/344 (35%), Gaps = 64/344 (18%)
Query: 92 DMRSKSKPVE-HPSELPKW-----NYDGSS-TGQAPGEDSEVILYPQA--IFKDPFRG-- 140
D+ K VE S+L K +DGSS G E+S++ LYP P+
Sbjct: 27 DILGTIKNVEIPVSQLGKALDNKVMFDGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEK 86
Query: 141 GNNILVICDTYTPAGEPIPTNKRHRA--AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWP 198
G ICD Y P G P + R+ ++ G E E+ L + + K
Sbjct: 87 GKVARFICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDF-NLGPEPEFFLFKLDEKGE 145
Query: 199 LGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 258
+G Y+ A D G + G I ++ EV PGQ E
Sbjct: 146 PTLE----LNDKGGYFDLAPTDL--GENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDF 199
Query: 259 GPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS-----TKSM 313
+ + + D I + +++ I + G+ + PKP+ G NG+G H N S +
Sbjct: 200 KYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFGV-NGSGMHCNLSLFKNGVNAF 258
Query: 314 REEGGYETIKKAILNLS----------LRHKEHISA--------YGEGNERRLTGKHETA 355
+E L LS ++H +A Y +RL +E A
Sbjct: 259 FDENAD-------LQLSETAKHFIAGIVKHATSFTAVTNPTVNSY-----KRLVPGYE-A 305
Query: 356 SIDSFSWGVANRGCSIRV--GRETEKQGKGYLEDRRPASNMDPY 397
+W NR IR+ R + +E R +PY
Sbjct: 306 PC-YVAWSAQNRSPLIRIPASRGISTR----VEVRSVDPAANPY 344
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 51.1 bits (123), Expect = 3e-07
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 32/227 (14%)
Query: 112 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTYTPA-GEPIPTNKRHRA- 166
DGSS G +S++ + P DPF + +IC P GE + R A
Sbjct: 53 DGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTIAA 112
Query: 167 -AEIFSNSKVSAEVPWFGIEQE-----------------YTLLQQNVKWPLGWP-----V 203
A + A+ +FG E E Y +W G +
Sbjct: 113 KAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGNL 172
Query: 204 GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMP-GQWEYQVGPSV 262
G PG + Y+ A D +DI G+ I + EV GQ E +
Sbjct: 173 GYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDK 230
Query: 263 GIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 309
+++ D++ +Y+++ + ++ G ++ PKPI D NG+G H + S
Sbjct: 231 LVNSADNLMIYKYVIKNVAKKYGKTVTFMPKPIFND-NGSGMHVHQS 276
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 49.5 bits (119), Expect = 1e-06
Identities = 83/342 (24%), Positives = 127/342 (37%), Gaps = 74/342 (21%)
Query: 112 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTYTPA-GEPIPTNKRHRA- 166
DGSS G +S+++L P DPFR + + + P EP + R+ A
Sbjct: 62 DGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIAR 121
Query: 167 -AEIFSNSKVSAEVPWFGIEQE-----------------YTLLQQNVKWPLGWP------ 202
AE + S A+ +FG E E Y + + W G
Sbjct: 122 KAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGS 181
Query: 203 --VGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMP-GQWEYQVG 259
G +G Y+ A D+ D+ D + +G + + EV GQ E
Sbjct: 182 PNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQ 239
Query: 260 PSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS-----TKSMR 314
+ + A D + +Y+++ Q G ++ PKP+ GD NG+G H + S M
Sbjct: 240 FNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAPLMY 298
Query: 315 EEGGYETIKKAILNLS----------LRHKEHISA--------YGEGNERRLTGKHETAS 356
+E GY LS L H + A Y +RL +E A
Sbjct: 299 DETGY-------AGLSDTARHYIGGLLHHAPSLLAFTNPTVNSY-----KRLVPGYE-AP 345
Query: 357 IDSFSWGVANRGCSIRVGRETEKQGKGY-LEDRRPASNMDPY 397
I + + NR +R+ T K LE R P S+ +PY
Sbjct: 346 I-NLVYSQRNRSACVRIPI-TGSNPKAKRLEFRSPDSSGNPY 385
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 49.1 bits (118), Expect = 1e-06
Identities = 53/227 (23%), Positives = 83/227 (36%), Gaps = 32/227 (14%)
Query: 112 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTYTPA-GEPIPTNKRHRA- 166
DGSS G +S+++L P A DPF + +++ CD P + + R A
Sbjct: 50 DGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAK 109
Query: 167 -AEIFSNSKVSAEVPWFGIEQE-----------------YTLLQQNVKWPLGWP-----V 203
AE + + A+ FG E E + W
Sbjct: 110 RAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNK 169
Query: 204 GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMP-GQWEYQVGPSV 262
G PG +G Y+ D +DI G+ + + EV GQ E +
Sbjct: 170 GHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNT 227
Query: 263 GIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 309
D I +Y++ + + G + PKP+ GD NG+G H + S
Sbjct: 228 MTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGD-NGSGMHCHMS 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 4e-06
Identities = 88/556 (15%), Positives = 138/556 (24%), Gaps = 218/556 (39%)
Query: 4 ILAPSMQW----QMRMPKYSNIASPMTTKMW-----SS---LLMKQNKKGTNRSSAKF-R 50
+L P+ + Q++ + P T ++ L+ KF
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEP-TEGFAADDEPTTPAELV------------GKFLG 66
Query: 51 VLALKSEDSTVNRLEDLLNL-------------DI--------------TPYTDKIIAEY 83
++ E S V + + +LNL DI T ++I Y
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 84 IWIGGTGIDMRSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGG-- 141
I + R K S L + G A L AIF GG
Sbjct: 127 I--TARIMAKRPFDKK--SNSAL----FRAVGEGNAQ-------LV--AIF-----GGQG 164
Query: 142 NNI-----LV-ICDTYTPAGEPIPTNKRHRAAEIFSN---SKVSAEVPWFGIEQEYTLLQ 192
N L + TY + +AE S + + AE F Q +L+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDL----IKFSAETLSELIRTTLDAE-KVFT--QGLNILE 217
Query: 193 QNVKWPLGWPVGAYPGPQGPYYCGAGADKSF---GRDIADAHYK-ACLYAGIN------- 241
W P Y S G I AHY G
Sbjct: 218 --------WLENPSNTPDKDYLLSIPI--SCPLIGV-IQLAHYVVTAKLLGFTPGELRSY 266
Query: 242 ISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNG 301
+ G G + +V I D W S +A VL + G
Sbjct: 267 LKGATGHSQ------GLVTAVAIAETDS-WES---FFVSVRKAITVLF---------FIG 307
Query: 302 AGCHTNYSTKSMR-------EEGG--------------YETIKKAI--LNLSLRHKEHIS 338
C+ Y S+ E E ++ + N L + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 339 A------------------YG-------------------EGNERRLTGKHE----TA-- 355
YG +ER+L + +
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 356 -------SIDSFSWGVANRGCSIRVGR------ETEKQGKGYLEDRRPASNMDPYVVTSL 402
+ D + + S +T G D R S +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GS----DLRVLSGSISERIVDC 482
Query: 403 LAETTILWEPTLEAEA 418
+ + WE T + +A
Sbjct: 483 IIRLPVKWETTTQFKA 498
Score = 30.0 bits (67), Expect = 2.2
Identities = 34/229 (14%), Positives = 62/229 (27%), Gaps = 93/229 (40%)
Query: 101 EHPSELPKWNYDGSSTGQAPGEDSEVILY---------PQAIFKD--------PFRGGNN 143
+P L + G G+ E+ +++ + IFK+ FR
Sbjct: 1667 NNPVNLTI--HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 144 ILVICDT-YT-PAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGW 201
+L T +T PA + K + E ++ +
Sbjct: 1725 LLSA--TQFTQPA--------------LTLMEKAAFED----LKSK-------------- 1750
Query: 202 PVGAYPGPQ-------GPY---YCGAGADKSFGRDIADA----HYKACLYAGINISGTNG 247
G P G Y A I Y+ G
Sbjct: 1751 --GLIPADATFAGHSLGEYAALASLADV---M--SIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 248 E-------VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 289
+ PG+ V S +A +Y++ER+ ++ G ++
Sbjct: 1804 RSNYGMIAINPGR----VAASFSQEA------LQYVVERVGKRTGWLVE 1842
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.089
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 50/166 (30%)
Query: 15 MPKYSNIASPMTTKMW-----------------SSLLMKQNKKGTNRSSAKFRVLALKSE 57
P ++I + + + +W SL+ KQ K+ T + + L +K E
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 58 DST------VNRLEDLLNLD----ITPYTDKIIAEYIWIGGTGIDMRSKSKPVEHPSELP 107
+ V+ D I PY D+ +I G ++ + E +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-----GHHLK-NIEHPERMTLFR 494
Query: 108 KW-----------NYDGSSTGQAPGEDSEVIL----YPQAIFK-DP 137
+D ++ A G + Y I DP
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWN-ASGSILNTLQQLKFYKPYICDNDP 539
Score = 34.1 bits (77), Expect = 0.11
Identities = 78/413 (18%), Positives = 126/413 (30%), Gaps = 117/413 (28%)
Query: 12 QMRMP------KYSNIASPMTT-KMWSSLLMKQNKKGTNRSSAKFRV-LALKSEDSTVNR 63
Q +M N SP T +M LL + + T+RS + L + S + + R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 64 L-------EDLLNLD------------------ITPYT-DKIIAEYIWIGGTG-IDMRSK 96
L LL L +T T K + +++ T I +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHH 294
Query: 97 SKPVEHPSE----LPKWNYDGSSTGQAPGEDSEVILYPQAI--FKDPFRGGNNIL----- 145
S + P E L K+ P E P+ + + R G
Sbjct: 295 SMTLT-PDEVKSLLLKYL--DCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKH 349
Query: 146 VICDTYTPAGE-------PIPTNKRHRAAEIF-SNSKVSAEV---PWFGIEQE------- 187
V CD T E P K +F ++ + + WF + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 188 ----YTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINIS 243
Y+L++ K P + P + + R I D HY
Sbjct: 410 KLHKYSLVE---KQPKESTIS-IPSIYLELKVKLENEYALHRSIVD-HYN---------- 454
Query: 244 GTNGEVMPGQWEYQVGPSVGIDA------GDHIWCSRYLLERITEQAGVVLS---LDPKP 294
+P ++ +D G H+ ER+T V L L+ K
Sbjct: 455 ------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQK- 506
Query: 295 IEGD---WNGAGCHTN-------YSTKSMREEGGYETIKKAILNLSLRHKEHI 337
I D WN +G N Y + YE + AIL+ + +E++
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Score = 30.6 bits (68), Expect = 1.1
Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 46/182 (25%)
Query: 1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
+ ++L + ++ M K M T+M+ + N+ AK+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKY----------N 130
Query: 61 VNRLEDLLNLDITPYTDKIIAEYIWI---GGTG------------------------IDM 93
V+RL+ L L + A+ + I G+G +++
Sbjct: 131 VSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 94 RSKSKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR------GGNNILVI 147
++ + P L K Y + + S I + R N L++
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 148 CD 149
Sbjct: 250 LL 251
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 6.0
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 20/40 (50%)
Query: 378 EKQG--------KGYLEDRRPASNMDPYVVTSLLA-ETTI 408
EKQ K Y +D PA LA + T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA-----------LAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.409
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,645,606
Number of extensions: 400012
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 26
Length of query: 428
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 332
Effective length of database: 4,021,377
Effective search space: 1335097164
Effective search space used: 1335097164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.2 bits)