RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014226
         (428 letters)



>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 52/259 (20%), Positives = 89/259 (34%), Gaps = 37/259 (14%)

Query: 177 AEVPWFGIEQEYTLLQQNV----------------------KWPLGWPVGAYPGPQGPYY 214
           A+   FG E E+ L                               G   G  PG +G Y+
Sbjct: 21  ADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80

Query: 215 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCS 273
                D    +DI           G+ +   + EV   GQ E     +      D I   
Sbjct: 81  PVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIY 138

Query: 274 RYLLERITEQAGVVLSLDPKPIEGDWNGAG-CHTNYSTK-----SMREEGGYETIKKAIL 327
           +Y++  +  + G   +  PKP+ GD      CH + +       S  +  G        +
Sbjct: 139 KYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYI 198

Query: 328 NLSLRHKEHISAYG---EGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGY 384
              ++H + I+A       + +RL   +E   + ++S    NR  SIR+      + +  
Sbjct: 199 GGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSAR--NRSASIRIPVVASPKAR-R 255

Query: 385 LEDRRPASNMDPYVVTSLL 403
           +E R P    +PY+  + L
Sbjct: 256 IEVRFPDPAANPYLCFAAL 274


>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 100

 Score = 33.8 bits (77), Expect = 0.006
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 91  IDMRSKSKPVEHPSE--LPKWNYDG------SSTGQAPGEDSEVILYPQA--IFKDPFRG 140
            D + K + V  P+     ++  +G      S  G     +S+++L P A     DPF  
Sbjct: 22  TDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFA 81

Query: 141 GNNILVICDTYTPA-GEP 157
            + +++ CD   P   + 
Sbjct: 82  DSTLIIRCDILEPGTLQG 99


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 31.1 bits (70), Expect = 0.059
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 91  IDMRSKSKPVEHPS--------ELPKWNYDGSSTGQAPGEDSEVILYPQA--IFKDPFRG 140
            D+    +    P+        +        S  G     +S+++L P       DPFR 
Sbjct: 22  CDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRA 81

Query: 141 GNNILVICDTYTPA-GEP 157
              + +    + P   EP
Sbjct: 82  AKTLNINFFVHDPFTLEP 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,627,380
Number of extensions: 77036
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 3
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.9 bits)