Query 014227
Match_columns 428
No_of_seqs 169 out of 1768
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 7.6E-17 1.7E-21 141.9 4.1 271 23-337 98-393 (419)
2 KOG4341 F-box protein containi 99.6 6.9E-16 1.5E-20 141.8 2.8 339 25-401 74-439 (483)
3 smart00579 FBD domain in FBox 99.1 1.7E-10 3.8E-15 83.2 5.4 70 356-425 1-71 (72)
4 PF08387 FBD: FBD; InterPro: 99.0 2.1E-10 4.5E-15 76.1 3.5 44 354-397 8-51 (51)
5 PF12937 F-box-like: F-box-lik 98.7 7.9E-09 1.7E-13 67.6 3.4 35 23-57 1-35 (47)
6 PF00646 F-box: F-box domain; 98.4 1.2E-07 2.5E-12 62.4 1.1 37 23-59 3-39 (48)
7 cd00116 LRR_RI Leucine-rich re 98.3 8.8E-07 1.9E-11 83.8 6.1 165 162-341 49-231 (319)
8 PLN00113 leucine-rich repeat r 98.3 1E-06 2.2E-11 96.3 6.9 214 162-398 116-342 (968)
9 smart00256 FBOX A Receptor for 98.3 1.1E-06 2.5E-11 55.4 4.1 33 26-58 1-33 (41)
10 cd00116 LRR_RI Leucine-rich re 98.2 2.2E-06 4.9E-11 81.0 6.3 216 161-396 78-315 (319)
11 PLN00113 leucine-rich repeat r 98.1 7.7E-06 1.7E-10 89.5 7.7 172 160-341 160-342 (968)
12 PLN03210 Resistant to P. syrin 98.1 9.7E-06 2.1E-10 89.6 8.2 84 157-242 627-713 (1153)
13 KOG2120 SCF ubiquitin ligase, 98.0 4.2E-07 9.2E-12 81.1 -3.8 175 164-342 185-374 (419)
14 PLN03210 Resistant to P. syrin 97.9 3.4E-05 7.3E-10 85.4 7.9 125 156-290 604-735 (1153)
15 KOG4341 F-box protein containi 97.7 9.1E-07 2E-11 82.5 -5.9 178 161-341 161-356 (483)
16 KOG1909 Ran GTPase-activating 97.7 1.5E-05 3.2E-10 73.0 1.7 267 84-371 19-309 (382)
17 KOG3207 Beta-tubulin folding c 97.4 1.3E-05 2.9E-10 75.3 -2.3 176 161-341 143-336 (505)
18 KOG4194 Membrane glycoprotein 97.4 6E-05 1.3E-09 73.6 1.9 60 277-340 362-425 (873)
19 KOG1909 Ran GTPase-activating 97.4 9.8E-05 2.1E-09 67.7 3.1 227 163-402 29-284 (382)
20 KOG3207 Beta-tubulin folding c 97.4 8E-06 1.7E-10 76.8 -4.1 177 162-341 119-311 (505)
21 KOG4194 Membrane glycoprotein 97.1 0.00015 3.2E-09 70.9 0.7 59 163-223 124-184 (873)
22 KOG2982 Uncharacterized conser 97.0 0.00046 9.9E-09 62.2 2.9 216 162-385 69-307 (418)
23 PF07723 LRR_2: Leucine Rich R 96.9 0.0011 2.5E-08 36.7 3.0 25 165-189 1-26 (26)
24 KOG3665 ZYG-1-like serine/thre 96.8 0.00037 8.1E-09 72.1 1.0 33 165-199 61-93 (699)
25 KOG3665 ZYG-1-like serine/thre 96.8 0.00042 9.1E-09 71.7 1.4 69 120-200 116-184 (699)
26 KOG1947 Leucine rich repeat pr 96.8 4.5E-05 9.7E-10 76.5 -5.7 39 21-59 43-81 (482)
27 PF14580 LRR_9: Leucine-rich r 96.8 0.00068 1.5E-08 57.6 1.9 88 250-341 61-150 (175)
28 KOG1947 Leucine rich repeat pr 96.6 0.00048 1E-08 69.0 -0.1 63 277-341 266-331 (482)
29 PRK15370 E3 ubiquitin-protein 96.5 0.0022 4.9E-08 67.1 4.2 156 163-341 219-377 (754)
30 PF14580 LRR_9: Leucine-rich r 96.5 0.00085 1.8E-08 57.0 0.4 122 162-288 17-148 (175)
31 PRK15387 E3 ubiquitin-protein 95.7 0.017 3.8E-07 60.5 5.7 11 280-290 382-392 (788)
32 PRK15387 E3 ubiquitin-protein 95.6 0.07 1.5E-06 56.1 9.8 72 163-243 241-312 (788)
33 PRK15370 E3 ubiquitin-protein 95.4 0.021 4.6E-07 60.0 5.2 155 164-341 199-356 (754)
34 KOG0281 Beta-TrCP (transducin 95.3 0.013 2.8E-07 53.6 2.7 37 20-56 72-112 (499)
35 PLN03215 ascorbic acid mannose 94.7 0.029 6.2E-07 53.4 3.5 37 23-59 4-41 (373)
36 KOG1259 Nischarin, modulator o 94.4 0.0048 1E-07 55.8 -2.3 211 160-383 210-450 (490)
37 KOG0618 Serine/threonine phosp 94.1 0.012 2.7E-07 61.0 -0.3 60 277-341 449-510 (1081)
38 KOG0444 Cytoskeletal regulator 94.0 0.0012 2.5E-08 65.4 -7.6 85 156-243 165-255 (1255)
39 PRK15386 type III secretion pr 93.9 0.11 2.3E-06 50.2 5.4 69 164-241 72-140 (426)
40 KOG2997 F-box protein FBX9 [Ge 93.6 0.043 9.4E-07 50.0 2.2 35 21-55 105-144 (366)
41 KOG0444 Cytoskeletal regulator 93.4 0.0018 4E-08 64.1 -7.3 41 157-199 48-88 (1255)
42 PF12799 LRR_4: Leucine Rich r 92.9 0.054 1.2E-06 34.4 1.2 35 164-200 1-35 (44)
43 KOG2123 Uncharacterized conser 92.6 0.011 2.4E-07 53.0 -3.0 84 251-339 39-125 (388)
44 KOG3864 Uncharacterized conser 92.4 0.022 4.8E-07 48.7 -1.4 42 162-203 123-165 (221)
45 KOG4658 Apoptotic ATPase [Sign 92.1 0.037 8E-07 59.2 -0.5 62 162-223 543-606 (889)
46 COG5238 RNA1 Ran GTPase-activa 91.5 0.12 2.5E-06 46.5 2.0 168 160-341 88-282 (388)
47 KOG2982 Uncharacterized conser 91.2 0.083 1.8E-06 48.1 0.8 87 251-341 69-156 (418)
48 PF13855 LRR_8: Leucine rich r 91.0 0.15 3.2E-06 34.9 1.8 34 277-310 22-56 (61)
49 KOG1259 Nischarin, modulator o 90.8 0.31 6.8E-06 44.5 4.1 60 163-222 181-247 (490)
50 KOG4658 Apoptotic ATPase [Sign 90.4 0.058 1.2E-06 57.8 -1.1 50 212-261 571-626 (889)
51 COG5238 RNA1 Ran GTPase-activa 90.3 0.35 7.6E-06 43.6 3.8 210 116-342 19-253 (388)
52 PF13855 LRR_8: Leucine rich r 90.0 0.3 6.5E-06 33.3 2.6 39 249-290 21-59 (61)
53 KOG0617 Ras suppressor protein 89.2 0.0065 1.4E-07 50.5 -7.2 22 320-341 162-183 (264)
54 PRK15386 type III secretion pr 88.0 0.71 1.5E-05 44.7 4.5 135 162-312 50-186 (426)
55 smart00367 LRR_CC Leucine-rich 87.7 0.25 5.4E-06 27.2 0.8 17 188-204 1-17 (26)
56 KOG3864 Uncharacterized conser 87.5 0.11 2.3E-06 44.6 -1.2 64 164-228 96-167 (221)
57 KOG2123 Uncharacterized conser 87.5 0.019 4E-07 51.6 -6.0 104 163-287 18-124 (388)
58 KOG1644 U2-associated snRNP A' 86.6 1.6 3.4E-05 37.8 5.2 60 161-223 61-124 (233)
59 PF13013 F-box-like_2: F-box-l 85.4 1.1 2.3E-05 34.8 3.4 39 22-60 21-63 (109)
60 COG4886 Leucine-rich repeat (L 85.4 0.35 7.5E-06 47.2 0.9 141 165-313 141-287 (394)
61 KOG2739 Leucine-rich acidic nu 83.8 0.18 3.8E-06 45.0 -1.7 34 212-245 65-103 (260)
62 KOG2739 Leucine-rich acidic nu 81.0 0.78 1.7E-05 41.1 1.2 91 249-341 61-153 (260)
63 KOG0274 Cdc4 and related F-box 81.0 0.79 1.7E-05 46.4 1.5 39 18-56 103-141 (537)
64 KOG1859 Leucine-rich repeat pr 80.6 0.32 6.8E-06 49.8 -1.5 16 162-177 107-122 (1096)
65 KOG0617 Ras suppressor protein 80.3 0.1 2.2E-06 43.6 -4.2 98 234-340 57-159 (264)
66 PF13516 LRR_6: Leucine Rich r 80.1 0.99 2.1E-05 24.1 1.0 22 163-184 1-22 (24)
67 KOG1644 U2-associated snRNP A' 78.8 1.7 3.6E-05 37.6 2.5 62 277-341 61-123 (233)
68 PF08387 FBD: FBD; InterPro: 78.6 2.9 6.2E-05 27.4 3.1 38 302-339 13-50 (51)
69 KOG0618 Serine/threonine phosp 78.2 0.68 1.5E-05 48.7 -0.0 59 277-341 216-274 (1081)
70 KOG4237 Extracellular matrix p 77.0 3 6.5E-05 39.8 3.8 93 233-328 274-372 (498)
71 KOG0472 Leucine-rich repeat pr 76.4 0.65 1.4E-05 44.3 -0.7 87 247-342 429-539 (565)
72 PLN03150 hypothetical protein; 72.5 2.1 4.6E-05 44.5 1.9 79 165-244 419-501 (623)
73 PF12799 LRR_4: Leucine Rich r 70.4 4.5 9.8E-05 25.5 2.4 14 277-290 21-34 (44)
74 COG4886 Leucine-rich repeat (L 65.0 1.6 3.5E-05 42.5 -0.8 167 162-341 114-287 (394)
75 smart00579 FBD domain in FBox 63.5 11 0.00023 26.6 3.5 40 303-342 5-44 (72)
76 PF13504 LRR_7: Leucine rich r 60.9 3.8 8.2E-05 19.9 0.5 11 190-200 2-12 (17)
77 PF09372 PRANC: PRANC domain; 59.7 7.8 0.00017 29.3 2.3 25 21-45 70-94 (97)
78 KOG3926 F-box proteins [Amino 59.6 5.2 0.00011 36.0 1.4 45 22-66 201-252 (332)
79 PF13306 LRR_5: Leucine rich r 56.2 11 0.00024 29.7 2.8 12 277-288 78-89 (129)
80 PLN03150 hypothetical protein; 48.9 21 0.00046 37.2 4.1 59 277-340 439-499 (623)
81 KOG3763 mRNA export factor TAP 46.4 22 0.00047 35.7 3.5 87 251-339 216-309 (585)
82 COG4829 CatC1 Muconolactone de 44.8 9 0.0002 27.8 0.5 35 26-60 11-47 (98)
83 PF00560 LRR_1: Leucine Rich R 39.9 22 0.00048 18.4 1.4 9 191-199 2-10 (22)
84 smart00368 LRR_RI Leucine rich 37.4 21 0.00046 19.8 1.2 21 164-184 2-22 (28)
85 KOG0472 Leucine-rich repeat pr 34.3 0.19 4.1E-06 47.7 -11.9 83 248-341 223-307 (565)
86 KOG4237 Extracellular matrix p 31.4 17 0.00037 35.0 0.2 43 299-345 318-360 (498)
87 KOG0531 Protein phosphatase 1, 31.0 10 0.00022 37.3 -1.4 98 162-263 93-196 (414)
88 KOG4408 Putative Mg2+ and Co2+ 28.6 11 0.00023 35.2 -1.6 34 23-56 8-41 (386)
89 KOG2502 Tub family proteins [G 23.6 68 0.0015 30.3 2.6 38 21-58 43-88 (355)
90 PF08004 DUF1699: Protein of u 20.7 1.4E+02 0.003 23.7 3.4 20 320-339 30-49 (131)
91 TIGR03221 muco_delta muconolac 20.2 25 0.00054 26.1 -0.7 32 25-60 13-46 (90)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.6e-17 Score=141.91 Aligned_cols=271 Identities=21% Similarity=0.306 Sum_probs=155.5
Q ss_pred CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh------ccccceEEec--CCCCCCCCCChhhHHHHHHHHHHHHhhC
Q 014227 23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL------WNFTTALDFA--GIGKDIIFPSKEEKSEYVCWVNKILSLH 94 (428)
Q Consensus 23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l------w~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 94 (428)
|..|||||+..||+.|+.+|+.+.+.|||||.++ |.. +|+. .+. .....+++.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~--------------p~~l~~l~~r- 159 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIH--------------PDVLGRLLSR- 159 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccC--------------hhHHHHHHhC-
Confidence 7899999999999999999999999999999874 554 3332 111 1233333322
Q ss_pred CCCCeeEEEEEeecCCCccchHHHHHHHHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeE
Q 014227 95 KGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNAL 174 (428)
Q Consensus 95 ~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~ 174 (428)
| |..|++. ....+...++.... ..+..+|++++...... .-.+- ..+..|..|+.|+|.+.
T Consensus 160 -g--V~v~Rla--r~~~~~prlae~~~-~frsRlq~lDLS~s~it---~stl~----------~iLs~C~kLk~lSlEg~ 220 (419)
T KOG2120|consen 160 -G--VIVFRLA--RSFMDQPRLAEHFS-PFRSRLQHLDLSNSVIT---VSTLH----------GILSQCSKLKNLSLEGL 220 (419)
T ss_pred -C--eEEEEcc--hhhhcCchhhhhhh-hhhhhhHHhhcchhhee---HHHHH----------HHHHHHHhhhhcccccc
Confidence 3 5555543 11111122222222 22345888888654321 00110 01235899999999999
Q ss_pred EeehHHHHHHHhcCCcccceeecccCCceeeE---EecCCCCcceEEeeecCCcceEE-----EECCCcceEEEcceeee
Q 014227 175 KVSGEVLEFFIHSCPHLEHLYVANSSELLSLK---VVGSSIPLKYLDIHYCYSMKEIE-----ISASSLVSFRYSGKDIK 246 (428)
Q Consensus 175 ~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~-----i~ap~L~~L~~~~~~~~ 246 (428)
++.|..... ++.-.+|+.|+|..|.+++.-. +-.+|++|..|++++|...+... -..|+|..|+++|+.-.
T Consensus 221 ~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 221 RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN 299 (419)
T ss_pred ccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh
Confidence 987764443 6667889999999999876322 22467899999999997443221 12488999998887432
Q ss_pred ee-------cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeee--cccCCCCCCCccEEEEEeecCCC
Q 014227 247 LH-------VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVF--MEFGHWELPKLLHLKLTITEPNC 317 (428)
Q Consensus 247 ~~-------~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 317 (428)
+. ...+|+|.+++++++..-.-+ .+..+ -.++.|++|.++.|-... +.+.+...+.|..|++.+ .
T Consensus 300 l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g----~ 373 (419)
T KOG2120|consen 300 LQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG----C 373 (419)
T ss_pred hhhhHHHHHHHhCCceeeeccccccccCch-HHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc----c
Confidence 21 224666666666544322111 11122 355566666665441100 011144555666666522 2
Q ss_pred CchhHHHHHHHhCCCccEEE
Q 014227 318 ESLLGLSFVLKACPFLQKLV 337 (428)
Q Consensus 318 ~~~~~l~~lL~~~P~L~~L~ 337 (428)
..+..+.-+.+.||+|+.-.
T Consensus 374 vsdt~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 374 VSDTTMELLKEMLSHLKINC 393 (419)
T ss_pred cCchHHHHHHHhCccccccc
Confidence 23333455555666655433
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.57 E-value=6.9e-16 Score=141.82 Aligned_cols=339 Identities=16% Similarity=0.208 Sum_probs=202.5
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh------ccccceEEec-CCCCCCCCCChhhHHHHHHHHHHHHhhCCCC
Q 014227 25 KFPDDILVNIISRLTLKEAARTSVLSSRWKYL------WNFTTALDFA-GIGKDIIFPSKEEKSEYVCWVNKILSLHKGS 97 (428)
Q Consensus 25 ~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l------w~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 97 (428)
.||.|++.+|||+|.++...+++.+|+-|.-. |..+...+|. +.. -..|..++.+ .|.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------g~VV~~~~~R-cgg 138 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------GGVVENMISR-CGG 138 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------------CcceehHhhh-hcc
Confidence 59999999999999999999999999999864 6554444333 111 1223333333 344
Q ss_pred CeeEEEEEeecCCCccchHHHHHHH--HHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEE
Q 014227 98 NINKFRIRCTLDNSHGRDITNWIYT--ATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK 175 (428)
Q Consensus 98 ~l~~l~l~~~~~~~~~~~~~~wl~~--~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~ 175 (428)
.++.+.++.-.... . +-+.. ...+++++|.+..+..- ..-.+..+ ...|++|+.|.|..|.
T Consensus 139 ~lk~LSlrG~r~v~----~-sslrt~~~~CpnIehL~l~gc~~i----Td~s~~sl--------a~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG----D-SSLRTFASNCPNIEHLALYGCKKI----TDSSLLSL--------ARYCRKLRHLNLHSCS 201 (483)
T ss_pred ccccccccccccCC----c-chhhHHhhhCCchhhhhhhcceec----cHHHHHHH--------HHhcchhhhhhhcccc
Confidence 48888876432111 1 11222 23468888877555421 11111111 2358999999999976
Q ss_pred -eehHHHHHHHhcCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcc-----eEEEECCCcceEEEcce---
Q 014227 176 -VSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMK-----EIEISASSLVSFRYSGK--- 243 (428)
Q Consensus 176 -~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~-----~i~i~ap~L~~L~~~~~--- 243 (428)
+++..+.++..+||+|+.|++.+|+.+..=.+. ..++.++.+...+|...+ .+.-..+.+.++++..+
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 666778888999999999999999866531111 134556677666776322 22222333444442222
Q ss_pred ---eeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeee-eecccC--CCCCCCccEEEEEeecCCC
Q 014227 244 ---DIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNE-VFMEFG--HWELPKLLHLKLTITEPNC 317 (428)
Q Consensus 244 ---~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~ 317 (428)
.....-..+..|+.+....+...+-..+..+. +++++|+.|.+..+.. ....+. ...++.|+.|.+... +.
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~--~~ 358 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC--GL 358 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc--ce
Confidence 11111123444555544433332211122566 8999999999987742 223332 567788999988554 33
Q ss_pred CchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEec
Q 014227 318 ESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP 397 (428)
Q Consensus 318 ~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~ 397 (428)
..+..+..+-.+||.|++|.++.+....++|...-..-.|-..+|..+++.+.+... +-+-..+.++++||++.+..
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~---d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT---DATLEHLSICRNLERIELID 435 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch---HHHHHHHhhCcccceeeeec
Confidence 334467888899999999999855322222221111224667889999999877663 22233456899999988765
Q ss_pred Cchh
Q 014227 398 SSSR 401 (428)
Q Consensus 398 ~~~~ 401 (428)
....
T Consensus 436 ~q~v 439 (483)
T KOG4341|consen 436 CQDV 439 (483)
T ss_pred hhhh
Confidence 5443
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.09 E-value=1.7e-10 Score=83.23 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=56.3
Q ss_pred cCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEecCchhHHHHHHHHHHH-hcccCCCcceEEe
Q 014227 356 VHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANM-LKDKLPQGVDLVV 425 (428)
Q Consensus 356 ~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 425 (428)
+|+.++|+.|+|.+|.|.++|+++++|||+||+.||+|+|..++...........+. ..+|+|++++|.+
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~ 71 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQF 71 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEe
Confidence 477889999999999999999999999999999999999998765433222222222 2399999999986
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.03 E-value=2.1e-10 Score=76.12 Aligned_cols=44 Identities=43% Similarity=0.557 Sum_probs=42.3
Q ss_pred CCcCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEec
Q 014227 354 IPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP 397 (428)
Q Consensus 354 ~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~ 397 (428)
.|+|+.+||+.|+|.||.|.++|+++++|+++||++||+|+|..
T Consensus 8 ~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 8 VPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 78999999999999999999999999999999999999999963
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.75 E-value=7.9e-09 Score=67.63 Aligned_cols=35 Identities=34% Similarity=0.659 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227 23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW 57 (428)
Q Consensus 23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw 57 (428)
|..||+||+.+||++|+.+|.++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999864
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.37 E-value=1.2e-07 Score=62.43 Aligned_cols=37 Identities=41% Similarity=0.662 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhccc
Q 014227 23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNF 59 (428)
Q Consensus 23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~ 59 (428)
|+.||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999997654
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.31 E-value=8.8e-07 Score=83.84 Aligned_cols=165 Identities=16% Similarity=0.035 Sum_probs=78.3
Q ss_pred CCcccceEEeeeEEee--hHH---HHHHHhcCCcccceeecccCCceee-----EEecCCCCcceEEeeecCCcceEEEE
Q 014227 162 GIKSLRSLCLNALKVS--GEV---LEFFIHSCPHLEHLYVANSSELLSL-----KVVGSSIPLKYLDIHYCYSMKEIEIS 231 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~L~~~~~~~~l-----~i~~~~~~L~~L~l~~c~~l~~i~i~ 231 (428)
.+++|++|.+.+..+. ... +...+..+++|+.|.|.+|...... .+... ++|++|++.+|.. ..-...
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~-~~~~~~ 126 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL-GDRGLR 126 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc-chHHHH
Confidence 4677888888877765 222 3344556778888888877643210 11111 3477777766642 100000
Q ss_pred CCCcceEEEcceeeeeecCCC-CCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecccC-----CCCCC
Q 014227 232 ASSLVSFRYSGKDIKLHVGNV-PQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-----HWELP 303 (428)
Q Consensus 232 ap~L~~L~~~~~~~~~~~~~~-p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-----~~~~~ 303 (428)
.....+... ++|+++++..+.... ...+...+ ..+.+|++|+++.+.......+ ...++
T Consensus 127 ------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 193 (319)
T cd00116 127 ------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLANNGIGDAGIRALAEGLKANC 193 (319)
T ss_pred ------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence 000011223 455555554444331 11111222 4555666666655533321111 23345
Q ss_pred CccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 304 KLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
+|++|++..+.........+...+..+|+|+.|++..+
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 66666664432222222334444555666666666543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.30 E-value=1e-06 Score=96.28 Aligned_cols=214 Identities=20% Similarity=0.132 Sum_probs=115.4
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceE---EEECCCcce
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEI---EISASSLVS 237 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i---~i~ap~L~~ 237 (428)
++++|+.|+|++..+.+.. . ....++|+.|+|.++...+.+. .-..+++|+.|++.++.....+ .-+.++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 5677777777776654321 0 1346677777777765322111 0123467777777776522211 123467777
Q ss_pred EEEcceee----eeecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEE
Q 014227 238 FRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKL 310 (428)
Q Consensus 238 L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l 310 (428)
|++.+... +-.+.++++|+.+++..+.... ... .+ ..+++|++|+++.+.... ..| ...+++|++|.|
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l-~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY---EI-GGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFL 267 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh---hH-hcCCCCCEEECcCceecc-ccChhHhCCCCCCEEEC
Confidence 77765532 2345567777777776544332 111 12 667788888887664332 223 556677888777
Q ss_pred EeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEeeeeeCCchHHHHHHHHhccc
Q 014227 311 TITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHEFRWLQIDPEIAFFIFRNAK 388 (428)
Q Consensus 311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~ 388 (428)
..+.... .+..-+..+++|+.|++..+.. ....|.. -..+|+.+.+.+-.-.... -..+.+.+
T Consensus 268 ~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l-------~~~~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~ 332 (968)
T PLN00113 268 YQNKLSG----PIPPSIFSLQKLISLDLSDNSL-------SGEIPELVIQLQNLEILHLFSNNFTGKI----PVALTSLP 332 (968)
T ss_pred cCCeeec----cCchhHhhccCcCEEECcCCee-------ccCCChhHcCCCCCcEEECCCCccCCcC----ChhHhcCC
Confidence 4432111 1123345677888888764321 1112322 2467888877653222111 12245778
Q ss_pred ccccEEEecC
Q 014227 389 VLEKMIIKPS 398 (428)
Q Consensus 389 ~L~~l~i~~~ 398 (428)
.|+.+.+...
T Consensus 333 ~L~~L~L~~n 342 (968)
T PLN00113 333 RLQVLQLWSN 342 (968)
T ss_pred CCCEEECcCC
Confidence 8999888644
No 9
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=1.1e-06 Score=55.40 Aligned_cols=33 Identities=39% Similarity=0.711 Sum_probs=31.2
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHhhHHHhhhcc
Q 014227 26 FPDDILVNIISRLTLKEAARTSVLSSRWKYLWN 58 (428)
Q Consensus 26 LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~ 58 (428)
||+|++..||++++.+|+++++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998754
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.21 E-value=2.2e-06 Score=81.03 Aligned_cols=216 Identities=15% Similarity=0.045 Sum_probs=115.7
Q ss_pred CCCcccceEEeeeEEeeh---HHHHHHHhcCCcccceeecccCCce-ee-E---EecCC-CCcceEEeeecCCcceEEEE
Q 014227 161 SGIKSLRSLCLNALKVSG---EVLEFFIHSCPHLEHLYVANSSELL-SL-K---VVGSS-IPLKYLDIHYCYSMKEIEIS 231 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~-~l-~---i~~~~-~~L~~L~l~~c~~l~~i~i~ 231 (428)
..+++|+.|+|.++.+.+ ..+..+..+ ++|+.|++.+|.... .+ . ....+ ++|+.|++.+|.- ..-.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~-- 153 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL-EGAS-- 153 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC-CchH--
Confidence 357899999999998764 235555555 789999999986431 00 0 11122 6777787777751 1000
Q ss_pred CCCcceEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecc---cC--CCCCCC
Q 014227 232 ASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFME---FG--HWELPK 304 (428)
Q Consensus 232 ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~ 304 (428)
+. .....+..+++|+++++..+...+ ...+...+ ..+++|+.|+++.+...... +. ...+++
T Consensus 154 ---~~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 154 ---CE-------ALAKALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred ---HH-------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 00 000012233455555554443332 11222222 45568888888766433221 11 556778
Q ss_pred ccEEEEEeecCCCCchhHHHHHHHh----CCCccEEEEEEecCCCC-cccccccCCcCccCCccEEEEeeee-eCCchHH
Q 014227 305 LLHLKLTITEPNCESLLGLSFVLKA----CPFLQKLVIKIWNNNRT-IGEKRHQIPVHLHQHLKVVELHEFR-WLQIDPE 378 (428)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~lL~~----~P~L~~L~i~~~~~~~~-~~~~~~~~p~~~~~~L~~v~i~~f~-g~~~e~~ 378 (428)
|++|++..+. ....++..+.+. .+.|+.|.+..+..... ........+.+ .+|+.+.+.+-. +.+.+..
T Consensus 223 L~~L~ls~n~---l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~--~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 223 LEVLNLGDNN---LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK--ESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred CCEEecCCCc---CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC--CCccEEECCCCCCcHHHHHH
Confidence 8888885432 222344555554 37888888876531100 00000101222 567777666422 3344567
Q ss_pred HHHHHHhcccccccEEEe
Q 014227 379 IAFFIFRNAKVLEKMIIK 396 (428)
Q Consensus 379 ~~~~ll~~a~~L~~l~i~ 396 (428)
+++-+..+.+.|+.+.|.
T Consensus 298 ~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 298 LAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHhhcCCchhhcccC
Confidence 777777777788877664
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.07 E-value=7.7e-06 Score=89.50 Aligned_cols=172 Identities=20% Similarity=0.190 Sum_probs=75.7
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE---EECCCc
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE---ISASSL 235 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L 235 (428)
+..+++|++|+|.++.+... +...+.++++|+.|.|.+|...+.+ ..-..+++|+.|.+.++.....+. -..++|
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 34455555555555443221 1112344555555555554322111 000123455555555543211110 123556
Q ss_pred ceEEEcceee----eeecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEE
Q 014227 236 VSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHL 308 (428)
Q Consensus 236 ~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L 308 (428)
+.|++.+... +..+.++++|+.+.+..+.... ... -+ ..+++|+.|+++.+.... ..| ...+++|+.|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l-~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 313 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP---SI-FSLQKLISLDLSDNSLSG-EIPELVIQLQNLEIL 313 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch---hH-hhccCcCEEECcCCeecc-CCChhHcCCCCCcEE
Confidence 6665554422 2234455666666665443221 111 11 455666666665553221 122 3455666666
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
++..+.... .+...+..+|+|+.|.+...
T Consensus 314 ~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 314 HLFSNNFTG----KIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred ECCCCccCC----cCChhHhcCCCCCEEECcCC
Confidence 664332111 11233456677777776644
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=9.7e-06 Score=89.63 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=39.4
Q ss_pred CCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe-cCCCCcceEEeeecCCcceEE--EECC
Q 014227 157 GHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV-GSSIPLKYLDIHYCYSMKEIE--ISAS 233 (428)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~~l~~i~--i~ap 233 (428)
|.+...+++|+.|+|.++..-.. +.. ++.+++|+.|.|.+|..+..+.-. ..+++|+.|++.+|..++.+. ++.+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 44455677777777766531100 011 445666666666666544322111 123455555555554443332 1234
Q ss_pred CcceEEEcc
Q 014227 234 SLVSFRYSG 242 (428)
Q Consensus 234 ~L~~L~~~~ 242 (428)
+|+.|.+.+
T Consensus 705 sL~~L~Lsg 713 (1153)
T PLN03210 705 SLYRLNLSG 713 (1153)
T ss_pred CCCEEeCCC
Confidence 444444443
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.2e-07 Score=81.11 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=106.7
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee--EEecCCCCcceEEeeecCCcceEEE-----ECCCcc
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL--KVVGSSIPLKYLDIHYCYSMKEIEI-----SASSLV 236 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~l~~i~i-----~ap~L~ 236 (428)
..|+.|+|+...++...+..+++.|..|+.|.|.+-...+.+ .|.. ...|+.|+++.|..+....+ ++..|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence 579999999999999999999999999999999987654433 2332 27899999999986554322 356676
Q ss_pred eEEEcceee--e---e-ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeee-eecccC-CCCCCCccEE
Q 014227 237 SFRYSGKDI--K---L-HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNE-VFMEFG-HWELPKLLHL 308 (428)
Q Consensus 237 ~L~~~~~~~--~---~-~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~~~-~~~~~~L~~L 308 (428)
.|+++=+.. + . ...--+.|+.+++..+...-....+..++..+++|.+|+++.+.. ....+. +.+|+.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 666542211 1 1 111234556666643322111111122237788888888876632 222222 6777788888
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
+++.++.... ...--+.+.|.|..|++.++-
T Consensus 344 SlsRCY~i~p---~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIP---ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCCh---HHeeeeccCcceEEEEecccc
Confidence 7755432221 112234577888888877653
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.86 E-value=3.4e-05 Score=85.43 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=78.3
Q ss_pred CCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE---EC
Q 014227 156 RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI---SA 232 (428)
Q Consensus 156 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~a 232 (428)
+|..+ .+.+|+.|+|.+..+.. +..-+..+++|+.|+|.+|..+..+.--+.+++|+.|++.+|..+..+.. +.
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence 34443 56888888888876542 22225678999999999887655433233458999999999986655532 35
Q ss_pred CCcceEEEccee----eeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeee
Q 014227 233 SSLVSFRYSGKD----IKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECC 290 (428)
Q Consensus 233 p~L~~L~~~~~~----~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~ 290 (428)
++|+.|++.++. ++.. .++++|+.+.+..+.... .+. ....+|+.|.++.+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L~-----~~p-~~~~nL~~L~L~~n 735 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCSRLK-----SFP-DISTNISWLDLDET 735 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCcc-----ccc-cccCCcCeeecCCC
Confidence 788888888752 1211 257778888776553221 122 33345566665544
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.71 E-value=9.1e-07 Score=82.48 Aligned_cols=178 Identities=18% Similarity=0.269 Sum_probs=99.4
Q ss_pred CCCcccceEEeeeEE-eehHHHHHHHhcCCcccceeecccCCceeeE---EecCCCCcceEEeeecCCcceEE-----EE
Q 014227 161 SGIKSLRSLCLNALK-VSGEVLEFFIHSCPHLEHLYVANSSELLSLK---VVGSSIPLKYLDIHYCYSMKEIE-----IS 231 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~-----i~ 231 (428)
..||+.+.|.+.+|. +++..+..+-..|+.|+.|.+..|..+++.. +...|++|+.|.+++|+.+..-. -.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 468999999888887 6777788888889999999999988776543 33467899999999998654421 12
Q ss_pred CCCcceEEEcceee-ee-----ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecc-cC--CCCC
Q 014227 232 ASSLVSFRYSGKDI-KL-----HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFME-FG--HWEL 302 (428)
Q Consensus 232 ap~L~~L~~~~~~~-~~-----~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~-~~--~~~~ 302 (428)
+.+++.+..+|+.- +. .-..++.+.++++..+...+-...+.+. ..+..++.|..+.+...... +. ...+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~-~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA-CGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh-hhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 34455554454411 10 1123333444443322211111222333 55566666666554322111 11 4445
Q ss_pred CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
.+|+.|.+.. +......++..+-++||.|+.+.+..+
T Consensus 320 ~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 320 HNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred CceEEEeccc--cchhhhhhhhhhhcCChhhhhhccccc
Confidence 6666666633 222334445555566666666666543
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.70 E-value=1.5e-05 Score=72.98 Aligned_cols=267 Identities=18% Similarity=0.147 Sum_probs=146.3
Q ss_pred HHHHHHHHhhCCCCCeeEEEEEeecCCCccchHHHHHHHHHhC--CCeEEEEE-eCCCCCCCccccchhhhhccCCCCCC
Q 014227 84 VCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAK--KVQNFELD-FWPPSHINDYAFPLERYNFLKRGHGL 160 (428)
Q Consensus 84 ~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~--~l~~L~l~-~~~~~~~~~~~lp~~~~~~l~lp~~~ 160 (428)
.+.|...+.... .+..+.+... ....-..+|+....+. .+++.++. +.... ....+|..+- .+.+.+
T Consensus 19 ~~~v~~~~~~~~--s~~~l~lsgn---t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR--~~~Ei~e~L~---~l~~aL 88 (382)
T KOG1909|consen 19 EKDVEEELEPMD--SLTKLDLSGN---TFGTEAARAIAKVLASKKELREVNLSDMFTGR--LKDEIPEALK---MLSKAL 88 (382)
T ss_pred hhhHHHHhcccC--ceEEEeccCC---chhHHHHHHHHHHHhhcccceeeehHhhhcCC--cHHHHHHHHH---HHHHHH
Confidence 344444444432 3666666532 3344567888776654 44444442 11111 0112222110 011334
Q ss_pred CCCcccceEEeeeEEeehH---HHHHHHhcCCcccceeecccCCce--eeEEecCCCCcceEEeeecCCcceEEEECCCc
Q 014227 161 SGIKSLRSLCLNALKVSGE---VLEFFIHSCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYSMKEIEISASSL 235 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L 235 (428)
.++|.|++|+|++..++.. .+..++++|..|+.|.|.+|-.-. .-.+. ..|.+|. ...-.-+.|.|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~------~~kk~~~~~~L 159 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELA------VNKKAASKPKL 159 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHH------HHhccCCCcce
Confidence 5789999999999998753 588999999999999999995311 10111 1122221 01111245666
Q ss_pred ceEEEcceeee--------eecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeec-----ccCCC
Q 014227 236 VSFRYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFM-----EFGHW 300 (428)
Q Consensus 236 ~~L~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~-----~~~~~ 300 (428)
+.+.+...... -.+...|.|+++++..+.... +.....-+ ..+++|+.|+++.+.+... ...++
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal-~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL-EHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHH-HhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 66665433221 123456888888887766554 21111222 7899999999987754321 12278
Q ss_pred CCCCccEEEEEeecCCCCchhHHHH-HHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeee
Q 014227 301 ELPKLLHLKLTITEPNCESLLGLSF-VLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFR 371 (428)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~-lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~ 371 (428)
.+++|+.|.+..+.-.......+.. +-+..|+|+.|.+.+..... ++..-.+.+-.-...|+++.+.+-+
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~-da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR-DAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH-HHHHHHHHHHhcchhhHHhcCCccc
Confidence 8889999998655433333434443 44478999999998753111 1100000111114678888887644
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=1.3e-05 Score=75.32 Aligned_cols=176 Identities=18% Similarity=0.107 Sum_probs=113.7
Q ss_pred CCCcccceEEeeeEEeehH-HHHHHHhcCCcccceeecccCCce--eeEEecCCCCcceEEeeecCC----cceEEEECC
Q 014227 161 SGIKSLRSLCLNALKVSGE-VLEFFIHSCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYS----MKEIEISAS 233 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~----l~~i~i~ap 233 (428)
..|++++.|+|+..=+... .+..++...|+||.|+|....... .-.....+++||.|.+..|.. +..+....|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 4599999999999888775 578889999999999998753211 111122458899999999972 345566789
Q ss_pred CcceEEEccee-e---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-------CCCC
Q 014227 234 SLVSFRYSGKD-I---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-------HWEL 302 (428)
Q Consensus 234 ~L~~L~~~~~~-~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-------~~~~ 302 (428)
+|+.|.+.+.. . .....-+..|++++++.....+.+.+ ... ..+++|+.|.++.+.......+ ...|
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~-~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-YKV-GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-ccc-ccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 99988776552 1 11223455688888876655542211 112 6788888888877755443333 4678
Q ss_pred CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
++|+.|.+..+.... +.. ..=++..++|+.|.+...
T Consensus 301 ~kL~~L~i~~N~I~~--w~s-l~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 301 PKLEYLNISENNIRD--WRS-LNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccceeeecccCcccc--ccc-cchhhccchhhhhhcccc
Confidence 888888885543222 222 223456677777765543
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.43 E-value=6e-05 Score=73.58 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=36.3
Q ss_pred ccCCcceeEEeeeeee----eecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 277 CCFPQLKTLDLECCNE----VFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
.++.+|++|+++..+. ++...+...++.|++|.+.++.--... ..-+...++||.|++..
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~----krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP----KRAFSGLEALEHLDLGD 425 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc----hhhhccCcccceecCCC
Confidence 7778888888865543 233333566788888888554321111 33345677788877754
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.43 E-value=9.8e-05 Score=67.72 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=138.3
Q ss_pred CcccceEEeeeEEeehH---HHHHHHhcCCcccceeecccCCce-eeEEecCCCCcceEEeeecCCcceEEEECCCcceE
Q 014227 163 IKSLRSLCLNALKVSGE---VLEFFIHSCPHLEHLYVANSSELL-SLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSF 238 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~-~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L 238 (428)
+..++.|+|++-+|+.+ .+...+++-+.|+.-++.+...-. .-.++ ..|+.| ...-+.+|+|+++
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~---e~L~~l--------~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP---EALKML--------SKALLGCPKLQKL 97 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH---HHHHHH--------HHHHhcCCceeEe
Confidence 67888888888888765 366666666666665554432100 00111 112211 2223456777777
Q ss_pred EEcceeee--------eecCCCCCeeEEEEeccCcch-----hhH------HHhhccccCCcceeEEeeeeeeeecc---
Q 014227 239 RYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ-----VRY------FIGLVVCCFPQLKTLDLECCNEVFME--- 296 (428)
Q Consensus 239 ~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~-----~~~------~~~l~~~~~~~l~~L~l~~~~~~~~~--- 296 (428)
++++..+. -.+.++..|+++++..+.... ++. ..... ..-+.|+.+.++.+..+...
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~-~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKA-ASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhcc-CCCcceEEEEeeccccccccHHH
Confidence 77765321 124567788888887665443 111 01223 56677888887665443321
Q ss_pred cC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeee-C
Q 014227 297 FG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRW-L 373 (428)
Q Consensus 297 ~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g-~ 373 (428)
+. +...+.|+.+++..+.........+..-++.||+|+.|+++..++-. .+...-+-+-+.+++|+++.+..+-- .
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccchheeeccccccccc
Confidence 11 56668899999977655555555667778899999999998654321 11110001233457899998887553 3
Q ss_pred CchHHHHHHHHhcccccccEEEecCchhH
Q 014227 374 QIDPEIAFFIFRNAKVLEKMIIKPSSSRR 402 (428)
Q Consensus 374 ~~e~~~~~~ll~~a~~L~~l~i~~~~~~~ 402 (428)
++-.++++.+-+.+|.|+.+.+.+..--+
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 67889999999999999999988776443
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=8e-06 Score=76.77 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=121.5
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc---CCceeeEEecCCCCcceEEeeecC----CcceEEEECCC
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS---SELLSLKVVGSSIPLKYLDIHYCY----SMKEIEISASS 234 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~---~~~~~l~i~~~~~~L~~L~l~~c~----~l~~i~i~ap~ 234 (428)
.+..|+...|.++.+.....+.....||++++|+|+.. .....+.|...+|+|+.|.++... .-.......+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 57899999999999877666678899999999999864 233445666778999999998654 22333446688
Q ss_pred cceEEEcceeeee-----ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecc-cC-CCCCCCccE
Q 014227 235 LVSFRYSGKDIKL-----HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFME-FG-HWELPKLLH 307 (428)
Q Consensus 235 L~~L~~~~~~~~~-----~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~-~~-~~~~~~L~~ 307 (428)
|+.|.+++|.+.. ....+|+|..+++..+...... .....-+..|+.|+|+.+...... .+ ...|+.|+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~---~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK---ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee---cchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 9999998886532 3557899999988766311100 111145677889999887554433 22 778899999
Q ss_pred EEEEeecCCCCch--hHHHHHHHhCCCccEEEEEEe
Q 014227 308 LKLTITEPNCESL--LGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 308 L~l~~~~~~~~~~--~~l~~lL~~~P~L~~L~i~~~ 341 (428)
|.++.+....... .+..+....+|+|+.|.+...
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 9986543322111 123445678999999999753
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.10 E-value=0.00015 Score=70.90 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=33.5
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCC--ceeeEEecCCCCcceEEeeecC
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSE--LLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
..+|+.|.|.+.-+..-.-+ -++..|.||+|+|..... +..-.++.. .++++|++.+..
T Consensus 124 sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNR 184 (873)
T ss_pred ccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeecccc
Confidence 45688899888765432111 255677888888865421 111122222 567777776543
No 22
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00046 Score=62.17 Aligned_cols=216 Identities=14% Similarity=0.070 Sum_probs=124.1
Q ss_pred CCcccceEEeeeEEeehH-HHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecC----CcceEEEECCCc
Q 014227 162 GIKSLRSLCLNALKVSGE-VLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCY----SMKEIEISASSL 235 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~----~l~~i~i~ap~L 235 (428)
.+..++.|+|.+..+.++ ++..++.+.|+|+.|+|...+....+. .+.+..+|+.|.+.+.. ..++..-+-|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 478999999999999986 599999999999999998765433322 22345788888887765 122333344666
Q ss_pred ceEEEcceeeee------ecCC-CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc--CCCCCCCcc
Q 014227 236 VSFRYSGKDIKL------HVGN-VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF--GHWELPKLL 306 (428)
Q Consensus 236 ~~L~~~~~~~~~------~~~~-~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~ 306 (428)
+.|.++...... -.+. .|.+..+....+...-+....++. ..+||+..+.+..+..+...- ....|+.+-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-hhcccchheeeecCcccchhhcccCCCCCcch
Confidence 666554432110 0011 112333333222221122222455 788999999987664433222 244555555
Q ss_pred EEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCC-C-cccccccCCcCccCCccEEEEee------eeeCCchHH
Q 014227 307 HLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNR-T-IGEKRHQIPVHLHQHLKVVELHE------FRWLQIDPE 378 (428)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~-~-~~~~~~~~p~~~~~~L~~v~i~~------f~g~~~e~~ 378 (428)
-|.|..+.. .++.+ .+-|..+|.|..|.+..++-.. - .++.+. .+...|..|++-+ -.-.+.|..
T Consensus 228 ~LnL~~~~i--dswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~----llIaRL~~v~vLNGskIss~er~dSEr~ 300 (418)
T KOG2982|consen 228 CLNLGANNI--DSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRF----LLIARLTKVQVLNGSKISSRERKDSERR 300 (418)
T ss_pred hhhhccccc--ccHHH-HHHHcCCchhheeeccCCcccccccCCcceE----EEEeeccceEEecCcccchhhhhhhHHH
Confidence 666644322 23333 4557899999999998665211 1 222221 1234566665543 123356888
Q ss_pred HHHHHHh
Q 014227 379 IAFFIFR 385 (428)
Q Consensus 379 ~~~~ll~ 385 (428)
|++|.++
T Consensus 301 fVRyym~ 307 (418)
T KOG2982|consen 301 FVRYYMS 307 (418)
T ss_pred HHHHHhh
Confidence 9998875
No 23
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.93 E-value=0.0011 Score=36.75 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=22.7
Q ss_pred ccceEEeeeEEeehH-HHHHHHhcCC
Q 014227 165 SLRSLCLNALKVSGE-VLEFFIHSCP 189 (428)
Q Consensus 165 ~L~~L~L~~~~~~~~-~l~~ll~~cp 189 (428)
+||+|+|.++.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999776 6999999998
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.84 E-value=0.00037 Score=72.10 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=14.3
Q ss_pred ccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227 165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS 199 (428)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (428)
+++..++.........++.+...+ |++|.|.+.
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl 93 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNL 93 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc--ccccCCcch
Confidence 444444444444444443322222 555555443
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.84 E-value=0.00042 Score=71.72 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227 120 IYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS 199 (428)
Q Consensus 120 l~~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (428)
+....+.++++|++.....- ...-|..+ ...||+|++|.+.+..+..+++..+..++|+|..|++.++
T Consensus 116 Ln~~sr~nL~~LdI~G~~~~---s~~W~~ki---------g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 116 LNEESRQNLQHLDISGSELF---SNGWPKKI---------GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HhHHHHHhhhhcCccccchh---hccHHHHH---------hhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 33344568999988543211 11111111 2348999999999999988889999999999999999887
Q ss_pred C
Q 014227 200 S 200 (428)
Q Consensus 200 ~ 200 (428)
.
T Consensus 184 n 184 (699)
T KOG3665|consen 184 N 184 (699)
T ss_pred C
Confidence 5
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=4.5e-05 Score=76.47 Aligned_cols=39 Identities=18% Similarity=0.435 Sum_probs=30.3
Q ss_pred ccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhccc
Q 014227 21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNF 59 (428)
Q Consensus 21 D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~ 59 (428)
+.+...|+.....+....+..+...+..++++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 456678888888888888888888888888888765443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.78 E-value=0.00068 Score=57.61 Aligned_cols=88 Identities=23% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-cc-CCCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227 250 GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EF-GHWELPKLLHLKLTITEPNCESLLGLSFVL 327 (428)
Q Consensus 250 ~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL 327 (428)
..++.|+.+.++.....+++. .+. ..+++|+.|.++....... .+ +...+++|+.|+|..+-... ....=..++
T Consensus 61 ~~L~~L~~L~L~~N~I~~i~~--~l~-~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi 136 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSISE--GLD-KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVI 136 (175)
T ss_dssp ---TT--EEE--SS---S-CH--HHH-HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHH
T ss_pred cChhhhhhcccCCCCCCcccc--chH-HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHH
Confidence 346677777776665554321 122 5688999999977654332 22 26778999999996543221 222235577
Q ss_pred HhCCCccEEEEEEe
Q 014227 328 KACPFLQKLVIKIW 341 (428)
Q Consensus 328 ~~~P~L~~L~i~~~ 341 (428)
..+|+|+.|+-...
T Consensus 137 ~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 137 YKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT-SEETTEET
T ss_pred HHcChhheeCCEEc
Confidence 89999999987654
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.62 E-value=0.00048 Score=69.03 Aligned_cols=63 Identities=29% Similarity=0.315 Sum_probs=35.4
Q ss_pred ccCCcceeEEeeeee-eeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 277 CCFPQLKTLDLECCN-EVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~-~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
..+++|+.|.+..+. .....+. ...+++|++|+|.. +......++..++.+||+|++|.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~--c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG--CHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec--CccchHHHHHHHHHhCcchhhhhhhhc
Confidence 456677777755443 1222222 45566677777743 223345556666777777777665544
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.54 E-value=0.0022 Score=67.11 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=67.4
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecC-CCCcceEEeeecCCcceEEEE-CCCcceEEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGS-SIPLKYLDIHYCYSMKEIEIS-ASSLVSFRY 240 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~-~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~ 240 (428)
+++|++|+|.++.+.. +..-+ .+.|+.|.|.+|... . ++.. ..+|+.|+++++. +..+.-. .++|+.|.+
T Consensus 219 ~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~-~--LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~L 290 (754)
T PRK15370 219 QGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRIT-E--LPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSV 290 (754)
T ss_pred ccCCCEEECCCCcccc--CChhh--hccccEEECcCCccC-c--CChhHhCCCCEEECcCCc-cCccccccCCCCcEEEC
Confidence 3566666666655432 11101 135666666665422 1 1110 1356666665443 3333211 235666666
Q ss_pred cceeee-eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCc
Q 014227 241 SGKDIK-LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCES 319 (428)
Q Consensus 241 ~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 319 (428)
++..+. +...-.++|+.+++..+.... +.....++|+.|.++.+... .+|....++|+.|+|..+....
T Consensus 291 s~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~------LP~~l~~sL~~L~Ls~N~Lt--~LP~~l~~sL~~L~Ls~N~L~~-- 360 (754)
T PRK15370 291 YDNSIRTLPAHLPSGITHLNVQSNSLTA------LPETLPPGLKTLEAGENALT--SLPASLPPELQVLDVSKNQITV-- 360 (754)
T ss_pred CCCccccCcccchhhHHHHHhcCCcccc------CCccccccceeccccCCccc--cCChhhcCcccEEECCCCCCCc--
Confidence 554321 100001234444443322211 11012356677776655332 2332223577777775432211
Q ss_pred hhHHHHHHHhCCCccEEEEEEe
Q 014227 320 LLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 320 ~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
. ..- -.++|+.|+|..+
T Consensus 361 L---P~~--lp~~L~~LdLs~N 377 (754)
T PRK15370 361 L---PET--LPPTITTLDVSRN 377 (754)
T ss_pred C---Chh--hcCCcCEEECCCC
Confidence 1 111 1357777777654
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.45 E-value=0.00085 Score=57.03 Aligned_cols=122 Identities=24% Similarity=0.298 Sum_probs=37.4
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--E--ECCCcce
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--I--SASSLVS 237 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i--~ap~L~~ 237 (428)
+.-++++|+|.+..++. ++.+-..+.+|+.|++.++.-.. +.--..+++|+.|.+++-. +..+. + ..|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 34567888888877644 23333356778888887775322 1111134677777776554 33331 1 2577777
Q ss_pred EEEcceeee-----eecCCCCCeeEEEEeccCcchh-hHHHhhccccCCcceeEEee
Q 014227 238 FRYSGKDIK-----LHVGNVPQLVDVVIHGAPLFQV-RYFIGLVVCCFPQLKTLDLE 288 (428)
Q Consensus 238 L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~~-~~~~~l~~~~~~~l~~L~l~ 288 (428)
|.+.+..+. ..+..+|+|+.+++..++.... .|-.-++ ..+|+|+.|+-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi-~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVI-YKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHH-HH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHH-HHcChhheeCCE
Confidence 777655331 1345677777777776665541 1211222 677777777754
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.69 E-value=0.017 Score=60.52 Aligned_cols=11 Identities=27% Similarity=0.151 Sum_probs=6.0
Q ss_pred CcceeEEeeee
Q 014227 280 PQLKTLDLECC 290 (428)
Q Consensus 280 ~~l~~L~l~~~ 290 (428)
.+|+.|+++.+
T Consensus 382 ~~L~~LdLs~N 392 (788)
T PRK15387 382 SGLKELIVSGN 392 (788)
T ss_pred cccceEEecCC
Confidence 35556665544
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.61 E-value=0.07 Score=56.10 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=33.7
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG 242 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~ 242 (428)
.++|++|+|.+..+.. +. ...++|+.|.+.++.. .. ++...+.|+.|.+.++. +..+....|+|+.|++++
T Consensus 241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~L-~~--Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPL-TH--LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD 311 (788)
T ss_pred CCCCcEEEecCCccCc--cc---CcccccceeeccCCch-hh--hhhchhhcCEEECcCCc-cccccccccccceeECCC
Confidence 4566666666654432 11 1124566666655432 11 11111345555555553 333333345666666655
Q ss_pred e
Q 014227 243 K 243 (428)
Q Consensus 243 ~ 243 (428)
.
T Consensus 312 N 312 (788)
T PRK15387 312 N 312 (788)
T ss_pred C
Confidence 4
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.40 E-value=0.021 Score=59.95 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=91.5
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEE-CCCcceEEEcc
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEIS-ASSLVSFRYSG 242 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~~~ 242 (428)
++|+.|+|.+..+.. +..-+ +++|+.|.+.++.. ..+.-. ..++|+.|.+++|. +..+... ..+|+.|.+++
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~L-tsLP~~-l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSNQL-TSIPAT-LPDTIQEMELSINR-ITELPERLPSALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcc-ccCChh-hhccccEEECcCCc-cCcCChhHhCCCCEEECcC
Confidence 679999999887653 11111 35899999998753 322111 11479999999886 3333211 24788998876
Q ss_pred eeee-eecCCCCCeeEEEEeccCcchhhHHHhhcccc-CCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCch
Q 014227 243 KDIK-LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCC-FPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESL 320 (428)
Q Consensus 243 ~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 320 (428)
..+. +.-.-.++|+.+.+..+.... +. .. .++|+.|.++.+.+. .+|...+++|+.|.+..+.... +
T Consensus 272 N~L~~LP~~l~~sL~~L~Ls~N~Lt~------LP-~~lp~sL~~L~Ls~N~Lt--~LP~~l~~sL~~L~Ls~N~Lt~--L 340 (754)
T PRK15370 272 NKISCLPENLPEELRYLSVYDNSIRT------LP-AHLPSGITHLNVQSNSLT--ALPETLPPGLKTLEAGENALTS--L 340 (754)
T ss_pred CccCccccccCCCCcEEECCCCcccc------Cc-ccchhhHHHHHhcCCccc--cCCccccccceeccccCCcccc--C
Confidence 6442 111112478888886654432 21 11 246777888766443 2343344789999885543221 1
Q ss_pred hHHHHHHHhCCCccEEEEEEe
Q 014227 321 LGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 321 ~~l~~lL~~~P~L~~L~i~~~ 341 (428)
..- -+++|+.|++...
T Consensus 341 ---P~~--l~~sL~~L~Ls~N 356 (754)
T PRK15370 341 ---PAS--LPPELQVLDVSKN 356 (754)
T ss_pred ---Chh--hcCcccEEECCCC
Confidence 111 2479999999865
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.25 E-value=0.013 Score=53.65 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=34.8
Q ss_pred cccCCCCc----HHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227 20 EDWFSKFP----DDILVNIISRLTLKEAARTSVLSSRWKYL 56 (428)
Q Consensus 20 ~D~~s~LP----d~iL~~Ils~L~~~d~~~~s~vskrWr~l 56 (428)
.|-+..|| |+|...|||+|...++.++-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 48899999 99999999999999999999999999874
No 35
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.71 E-value=0.029 Score=53.35 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHhcCC-hHHHHHHHHhhHHHhhhccc
Q 014227 23 FSKFPDDILVNIISRLT-LKEAARTSVLSSRWKYLWNF 59 (428)
Q Consensus 23 ~s~LPd~iL~~Ils~L~-~~d~~~~s~vskrWr~lw~~ 59 (428)
+++||+|+|..|..+|+ .-|.+|.+.||+.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 88999999999999998 56999999999999986543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.41 E-value=0.0048 Score=55.80 Aligned_cols=211 Identities=19% Similarity=0.166 Sum_probs=107.9
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCce-------------------------eeEEecCCCCc
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELL-------------------------SLKVVGSSIPL 214 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-------------------------~l~i~~~~~~L 214 (428)
..-|.+|+++.++.|.- ..+..+...-|.|+++.+++...-. ...++. ...|
T Consensus 210 l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT-Wq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT-WQEL 286 (490)
T ss_pred hHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch-Hhhh
Confidence 44588999999888852 3344456667888888887642100 001111 1334
Q ss_pred ceEEeeecCCcceE---EEECCCcceEEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeee
Q 014227 215 KYLDIHYCYSMKEI---EISASSLVSFRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLEC 289 (428)
Q Consensus 215 ~~L~l~~c~~l~~i---~i~ap~L~~L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~ 289 (428)
+.++++... +..+ .--+|.++.|.++...+. -.+..+++|++++++.+...... ++- ..+.|+++|.+..
T Consensus 287 telDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~---Gwh-~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 287 TELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECV---GWH-LKLGNIKTLKLAQ 361 (490)
T ss_pred hhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhh---hhH-hhhcCEeeeehhh
Confidence 445444332 1111 112577777766544331 23556777777777655433322 222 5566777777765
Q ss_pred eeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee
Q 014227 290 CNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE 369 (428)
Q Consensus 290 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~ 369 (428)
+.++.. ..+..+.+|..|++..+... +... ..-+.+.|.||.+.+...+-... .+.+.-+-.-.-..=.++.+.+
T Consensus 362 N~iE~L-SGL~KLYSLvnLDl~~N~Ie--~lde-V~~IG~LPCLE~l~L~~NPl~~~-vdYRTKVLa~FGERaSE~~LD~ 436 (490)
T KOG1259|consen 362 NKIETL-SGLRKLYSLVNLDLSSNQIE--ELDE-VNHIGNLPCLETLRLTGNPLAGS-VDYRTKVLARFGERASEISLDN 436 (490)
T ss_pred hhHhhh-hhhHhhhhheeccccccchh--hHHH-hcccccccHHHHHhhcCCCcccc-chHHHHHHHHHhhhhhheecCC
Confidence 533221 11455667777777544211 1211 23345788888888765431110 0000000000112334566666
Q ss_pred eeeCCchHHHHHHH
Q 014227 370 FRWLQIDPEIAFFI 383 (428)
Q Consensus 370 f~g~~~e~~~~~~l 383 (428)
-.+.+.|++-+..+
T Consensus 437 ~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 437 EPGNQQELDTVLVL 450 (490)
T ss_pred CCcchhhhhHHHHH
Confidence 66777777776654
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.14 E-value=0.012 Score=60.97 Aligned_cols=60 Identities=28% Similarity=0.257 Sum_probs=36.1
Q ss_pred ccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
..+++|+.+++++.+.....++ .+. ++|++|+++++.....+ ..-|..|.++....+...
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccc----hhhhHHhhhhhheecccC
Confidence 5678888888888766655555 333 78888888665322211 334455555555555544
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.96 E-value=0.0012 Score=65.42 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEec---CCCCcceEEeeecCCcceE---E
Q 014227 156 RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVG---SSIPLKYLDIHYCYSMKEI---E 229 (428)
Q Consensus 156 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~---~~~~L~~L~l~~c~~l~~i---~ 229 (428)
+|+....+.+|++|.|++.++..-.+.. +.+...|++|++++.+.. ...++. ++.+|+.++++... +..+ .
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecl 241 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN-LPIVPECL 241 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccC-CCcchHHH
Confidence 4666777888899988887754433322 334445666666665421 112222 22345555554332 2211 1
Q ss_pred EECCCcceEEEcce
Q 014227 230 ISASSLVSFRYSGK 243 (428)
Q Consensus 230 i~ap~L~~L~~~~~ 243 (428)
...++|+.|++++.
T Consensus 242 y~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhhhhheeccCcC
Confidence 23456666666655
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.86 E-value=0.11 Score=50.22 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=34.4
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS 241 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 241 (428)
++|++|.+.+|.--.. +...+ .+.|+.|.+.+|..+.. ++ ++|+.|.+.. .....+.---++|+.|.+.
T Consensus 72 ~sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~Cs~L~s--LP---~sLe~L~L~~-n~~~~L~~LPssLk~L~I~ 140 (426)
T PRK15386 72 NELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHCPEISG--LP---ESVRSLEIKG-SATDSIKNVPNGLTSLSIN 140 (426)
T ss_pred CCCcEEEccCCCCccc-CCchh--hhhhhheEccCcccccc--cc---cccceEEeCC-CCCcccccCcchHhheecc
Confidence 3578887777542110 11111 24677888877754432 22 4566666642 2222232222456666654
No 40
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.64 E-value=0.043 Score=49.97 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.3
Q ss_pred ccCCCCcHHHHHHHHhc-----CChHHHHHHHHhhHHHhh
Q 014227 21 DWFSKFPDDILVNIISR-----LTLKEAARTSVLSSRWKY 55 (428)
Q Consensus 21 D~~s~LPd~iL~~Ils~-----L~~~d~~~~s~vskrWr~ 55 (428)
+.|+.||||||..||.+ ++.++..++|+|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 45789999999999975 456999999999999975
No 41
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.42 E-value=0.0018 Score=64.10 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227 157 GHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS 199 (428)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (428)
|..+..+.+|++|++.+..+.. +..=++..|.|+.+.++..
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhcc
Confidence 3334456666666666554211 1111555666666666544
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.89 E-value=0.054 Score=34.39 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=25.2
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccC
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSS 200 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (428)
++|++|+|.+..+.+ +...++.||+|+.|.+.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 478888888887764 44447888888888888875
No 43
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.011 Score=52.98 Aligned_cols=84 Identities=21% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-ccC-CCCCCCccEEEEEeecCCC-CchhHHHHHH
Q 014227 251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EFG-HWELPKLLHLKLTITEPNC-ESLLGLSFVL 327 (428)
Q Consensus 251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~-~~~~~l~~lL 327 (428)
.+|.|+-+.++.+...++..+ ..|++|+.|.|.-+.+... ++. +..+++|+.|.|.-+-|.. ..-..=..+|
T Consensus 39 kMp~lEVLsLSvNkIssL~pl-----~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPL-----QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred hcccceeEEeeccccccchhH-----HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 455555555554444332221 5666666666654433221 122 5666777777775544332 2222335678
Q ss_pred HhCCCccEEEEE
Q 014227 328 KACPFLQKLVIK 339 (428)
Q Consensus 328 ~~~P~L~~L~i~ 339 (428)
+..|||++|+=.
T Consensus 114 R~LPnLkKLDnv 125 (388)
T KOG2123|consen 114 RVLPNLKKLDNV 125 (388)
T ss_pred HHcccchhccCc
Confidence 889999998744
No 44
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.022 Score=48.75 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCcccceEEeeeEE-eehHHHHHHHhcCCcccceeecccCCce
Q 014227 162 GIKSLRSLCLNALK-VSGEVLEFFIHSCPHLEHLYVANSSELL 203 (428)
Q Consensus 162 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~ 203 (428)
.++.++.|.+..|. ++|..++.+-...|+||+|+|.+|..++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 45566666666664 5555566655566666666666666544
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.09 E-value=0.037 Score=59.22 Aligned_cols=62 Identities=29% Similarity=0.314 Sum_probs=30.9
Q ss_pred CCcccceEEeeeEEe-ehHHHHHHHhcCCcccceeecccCCceeeEE-ecCCCCcceEEeeecC
Q 014227 162 GIKSLRSLCLNALKV-SGEVLEFFIHSCPHLEHLYVANSSELLSLKV-VGSSIPLKYLDIHYCY 223 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i-~~~~~~L~~L~l~~c~ 223 (428)
.+++|++|-+....- -...-..++.+.|.|..|+|++|...+.+.- .+.+-+|+.|+++++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence 456677776666531 1111223455667777777776654432211 1123455555555554
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.50 E-value=0.12 Score=46.51 Aligned_cols=168 Identities=21% Similarity=0.135 Sum_probs=94.9
Q ss_pred CCCCcccceEEeeeEEeeh---HHHHHHHhcCCcccceeecccCCc--eeeEEecCCCCcceEEeeecCCcceEEEECCC
Q 014227 160 LSGIKSLRSLCLNALKVSG---EVLEFFIHSCPHLEHLYVANSSEL--LSLKVVGSSIPLKYLDIHYCYSMKEIEISASS 234 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~--~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~ 234 (428)
+.+||+|++.+|++..|+. ..+..++++...|+.|.+.+|..- ..-+|. +.|.+|... .=.-+.|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~n------KKaa~kp~ 158 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAYN------KKAADKPK 158 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHHH------hhhccCCC
Confidence 4579999999999988764 457788899999999999888521 111222 122222110 01124566
Q ss_pred cceEEEcceeee--------eecCCCCCeeEEEEeccCcch--hhHHH--hhccccCCcceeEEeeeeeeeec---ccC-
Q 014227 235 LVSFRYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ--VRYFI--GLVVCCFPQLKTLDLECCNEVFM---EFG- 298 (428)
Q Consensus 235 L~~L~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~--~~~~~--~l~~~~~~~l~~L~l~~~~~~~~---~~~- 298 (428)
|+.+.+....+. ..+...-.|..+.+..+.... +.... ++ ..+.+|+.|+++...+... .+.
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl--~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL--FYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH--HHhCcceeeeccccchhhhhHHHHHH
Confidence 666544322110 112233467777776665543 22111 22 5678999999977643321 121
Q ss_pred -CCCCCCccEEEEEeecCCCCchhHHHHHHH-----hCCCccEEEEEEe
Q 014227 299 -HWELPKLLHLKLTITEPNCESLLGLSFVLK-----ACPFLQKLVIKIW 341 (428)
Q Consensus 299 -~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~-----~~P~L~~L~i~~~ 341 (428)
.+.-++|+.|.+..+..+.. +...+++ ..|+|..|-.+..
T Consensus 237 al~~W~~lrEL~lnDClls~~---G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNE---GVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred Hhcccchhhhccccchhhccc---cHHHHHHHhhhhcCCCccccccchh
Confidence 56667789988844332323 3344444 3578887777653
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=0.083 Score=48.08 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=60.1
Q ss_pred CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCC-CCCCCccEEEEEeecCCCCchhHHHHHHHh
Q 014227 251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGH-WELPKLLHLKLTITEPNCESLLGLSFVLKA 329 (428)
Q Consensus 251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~ 329 (428)
.+..+.++++..+-..+++.+..++ ..+|.++.|++++......+-.. -...||+.|-|.+. ..++.....++..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~il-e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT---~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAIL-EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT---GLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHH-hcCccceEeeccCCcCCCccccCcccccceEEEEEcCC---CCChhhhhhhhhc
Confidence 4666777777666666566666777 89999999999888554433333 35678888888433 3445556778888
Q ss_pred CCCccEEEEEEe
Q 014227 330 CPFLQKLVIKIW 341 (428)
Q Consensus 330 ~P~L~~L~i~~~ 341 (428)
.|.++.|+++..
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 888888876643
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=91.03 E-value=0.15 Score=34.87 Aligned_cols=34 Identities=35% Similarity=0.394 Sum_probs=14.6
Q ss_pred ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKL 310 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 310 (428)
..+++|+.|+++.+......-. +..+++|++|++
T Consensus 22 ~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence 4455555555554433221111 344445555544
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.82 E-value=0.31 Score=44.45 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=30.5
Q ss_pred CcccceEEeeeEE--eehHH-----HHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeec
Q 014227 163 IKSLRSLCLNALK--VSGEV-----LEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYC 222 (428)
Q Consensus 163 ~~~L~~L~L~~~~--~~~~~-----l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c 222 (428)
|..|+.|....+. |+.+. +..-++.+.+|.++.+..|+.-....+...-|.|..+.+.+.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecc
Confidence 5667777766664 32221 111144566677777777654332222222266666655543
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=90.39 E-value=0.058 Score=57.80 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCcceEEeeecCCcceEEE---ECCCcceEEEcceee---eeecCCCCCeeEEEEe
Q 014227 212 IPLKYLDIHYCYSMKEIEI---SASSLVSFRYSGKDI---KLHVGNVPQLVDVVIH 261 (428)
Q Consensus 212 ~~L~~L~l~~c~~l~~i~i---~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~ 261 (428)
+.|+.|++++|..+..+.- .--+|++|++.+..+ |..+.++..|..+++.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 5566666665554443321 123444444444422 2333444445555444
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.29 E-value=0.35 Score=43.58 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=119.0
Q ss_pred HHHHHHH-HHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEe---ehH------HHHHHH
Q 014227 116 ITNWIYT-ATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKV---SGE------VLEFFI 185 (428)
Q Consensus 116 ~~~wl~~-~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~---~~~------~l~~ll 185 (428)
+...+.- .+...+.+++++..+......-.+. . .+.+-.+|+...+++... .+. .+-..+
T Consensus 19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~-~---------~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL 88 (388)
T COG5238 19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELC-N---------VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL 88 (388)
T ss_pred hhHHHHHHHhhcceeEEeccCCcccHHHHHHHH-H---------HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH
Confidence 4444443 3356788888766544311111111 1 122346677766666532 222 233456
Q ss_pred hcCCcccceeecccCC-cee----eEEecCCCCcceEEeeecCCcceEEE--ECCCcceEEEcceeeeeecCCCCCeeEE
Q 014227 186 HSCPHLEHLYVANSSE-LLS----LKVVGSSIPLKYLDIHYCYSMKEIEI--SASSLVSFRYSGKDIKLHVGNVPQLVDV 258 (428)
Q Consensus 186 ~~cp~Le~L~L~~~~~-~~~----l~i~~~~~~L~~L~l~~c~~l~~i~i--~ap~L~~L~~~~~~~~~~~~~~p~L~~l 258 (428)
..||.|+...|++.-. ... ..+-++...|++|.+.+|. +..+.- -+..|..|-|.. ...+-|.|+.+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nK-----Kaa~kp~Le~v 162 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNK-----KAADKPKLEVV 162 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHh-----hhccCCCceEE
Confidence 7899999999986532 111 1122344788999888886 332210 011233332221 23467778877
Q ss_pred EEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeeccc------CCCCCCCccEEEEEeecCCCCchhHHHHHHHhC
Q 014227 259 VIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEF------GHWELPKLLHLKLTITEPNCESLLGLSFVLKAC 330 (428)
Q Consensus 259 ~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~ 330 (428)
.+..+...+ ..+.-..+ ++..+++.+.+....+....+ ...++.+|+.|+|..+......-..+...+...
T Consensus 163 icgrNRlengs~~~~a~~l-~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 163 ICGRNRLENGSKELSAALL-ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EeccchhccCcHHHHHHHH-HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 665444333 11111333 666888888886664433221 167888999999977766655555667777788
Q ss_pred CCccEEEEEEec
Q 014227 331 PFLQKLVIKIWN 342 (428)
Q Consensus 331 P~L~~L~i~~~~ 342 (428)
|+|+.|.+..|.
T Consensus 242 ~~lrEL~lnDCl 253 (388)
T COG5238 242 NLLRELRLNDCL 253 (388)
T ss_pred chhhhccccchh
Confidence 999999998764
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=89.98 E-value=0.3 Score=33.30 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=20.8
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeee
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECC 290 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~ 290 (428)
+.++++|+.+++..+....+.. +.+ .++++|+.|.++++
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~--~~f-~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPP--DAF-SNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEET--TTT-TTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCH--HHH-cCCCCCCEEeCcCC
Confidence 3455666666665444332110 222 67777777777654
No 53
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=89.18 E-value=0.0065 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=11.7
Q ss_pred hhHHHHHHHhCCCccEEEEEEe
Q 014227 320 LLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 320 ~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
...+..-+.....|++|+|++.
T Consensus 162 ll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 162 LLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhCcHHHHHHHHHHHHhcccc
Confidence 3344444455555666666653
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.04 E-value=0.71 Score=44.73 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=74.9
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCC-cccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCP-HLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY 240 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 240 (428)
.+++++.|++++|.+.. +...| +|++|.+.+|..+..+.-.-+ ++|+.|.+.+|..+..+ -++|+.|.+
T Consensus 50 ~~~~l~~L~Is~c~L~s------LP~LP~sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~sL---P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIES------LPVLPNELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEISGL---PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcc------cCCCCCCCcEEEccCCCCcccCCchhh-hhhhheEccCccccccc---ccccceEEe
Confidence 36888888888885322 11234 588899988887654321111 57888988888655443 246777777
Q ss_pred cceeeeeecCCCC-CeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEe
Q 014227 241 SGKDIKLHVGNVP-QLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTI 312 (428)
Q Consensus 241 ~~~~~~~~~~~~p-~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 312 (428)
.+.... .+..+| +|+++.+....... . ..+...--++|+.|.++++... .+|..--.+|++|.+..
T Consensus 120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~-~--~~lp~~LPsSLk~L~Is~c~~i--~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 120 KGSATD-SIKNVPNGLTSLSINSYNPEN-Q--ARIDNLISPSLKTLSLTGCSNI--ILPEKLPESLQSITLHI 186 (426)
T ss_pred CCCCCc-ccccCcchHhheecccccccc-c--cccccccCCcccEEEecCCCcc--cCcccccccCcEEEecc
Confidence 544321 133343 57766663211100 0 0111011267899999776422 22311225888888844
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.74 E-value=0.25 Score=27.22 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=12.8
Q ss_pred CCcccceeecccCCcee
Q 014227 188 CPHLEHLYVANSSELLS 204 (428)
Q Consensus 188 cp~Le~L~L~~~~~~~~ 204 (428)
||+|+.|.|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 67888888888876654
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.54 E-value=0.11 Score=44.64 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=40.5
Q ss_pred cccceEEeeeEEee-----hHHHHHHHhcCCcccceeecccCCceee---EEecCCCCcceEEeeecCCcceE
Q 014227 164 KSLRSLCLNALKVS-----GEVLEFFIHSCPHLEHLYVANSSELLSL---KVVGSSIPLKYLDIHYCYSMKEI 228 (428)
Q Consensus 164 ~~L~~L~L~~~~~~-----~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~l~~i 228 (428)
++.-...+.-+.-. ...++. +.+++.++.|.+.+|..+.+- .+....++|+.|++++|+.+++-
T Consensus 96 ~~~~~~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 96 PNADNVKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred CCCCcceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 34444444444433 344554 678999999999999876532 12223478888888888765443
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=0.019 Score=51.63 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=52.3
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG 242 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~ 242 (428)
+.+.+.|+..+|.+.|-. +....|.||.|.|.-... ..+.--..|.+|++|.+.... .+.|.+|.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~--------I~sldEL~--- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNC--------IESLDELE--- 82 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhcc--------cccHHHHH---
Confidence 456677777777766533 244567777777643321 111111123334433332211 01111111
Q ss_pred eeeeeecCCCCCeeEEEEeccCcch---hhHHHhhccccCCcceeEEe
Q 014227 243 KDIKLHVGNVPQLVDVVIHGAPLFQ---VRYFIGLVVCCFPQLKTLDL 287 (428)
Q Consensus 243 ~~~~~~~~~~p~L~~l~l~~~~~~~---~~~~~~l~~~~~~~l~~L~l 287 (428)
.+.++|+|+.+++..++... -.|-...+ ..+|||++|+=
T Consensus 83 -----YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL-R~LPnLkKLDn 124 (388)
T KOG2123|consen 83 -----YLKNLPSLRTLWLDENPCCGEAGQNYRRKVL-RVLPNLKKLDN 124 (388)
T ss_pred -----HHhcCchhhhHhhccCCcccccchhHHHHHH-HHcccchhccC
Confidence 24567778888877666544 12322444 77888888874
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.55 E-value=1.6 Score=37.77 Aligned_cols=60 Identities=27% Similarity=0.301 Sum_probs=38.4
Q ss_pred CCCcccceEEeeeEEeeh--HHHHHHHhcCCcccceeecccCC--ceeeEEecCCCCcceEEeeecC
Q 014227 161 SGIKSLRSLCLNALKVSG--EVLEFFIHSCPHLEHLYVANSSE--LLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
.++++|.+|.|...++.. ..+.. -.|+|..|.|.+.+. ++.+.=-++||+|+.|.+-+-+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 368899999999887653 33433 358888888887542 3333333456777777665543
No 59
>PF13013 F-box-like_2: F-box-like domain
Probab=85.42 E-value=1.1 Score=34.78 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=31.0
Q ss_pred cCCCCcHHHHHHHHhcCChHHHHHHHHhhH--H-Hhhh-cccc
Q 014227 22 WFSKFPDDILVNIISRLTLKEAARTSVLSS--R-WKYL-WNFT 60 (428)
Q Consensus 22 ~~s~LPd~iL~~Ils~L~~~d~~~~s~vsk--r-Wr~l-w~~~ 60 (428)
.+.+||+||+..|+.+-...+...+...++ | |++. |..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999999999999988887777 4 4444 5543
No 60
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=85.39 E-value=0.35 Score=47.19 Aligned_cols=141 Identities=19% Similarity=0.161 Sum_probs=79.5
Q ss_pred ccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE--ECCC-cceEEEc
Q 014227 165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI--SASS-LVSFRYS 241 (428)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i--~ap~-L~~L~~~ 241 (428)
+|+.|++.+-.+.+- ..-+..+|.|+.|.+.+++...........+.|+.|.+++.. +..+.. ..++ |+++.+.
T Consensus 141 nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 888888888776442 123678899999999888754332221133678888887765 444433 1333 7777665
Q ss_pred cee-e--eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEee
Q 014227 242 GKD-I--KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTIT 313 (428)
Q Consensus 242 ~~~-~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 313 (428)
+.. . ...+...+.+..+.+........ .... ..+++++.|.++......... ...+.+|+.|.+..+
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~-~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDL---PESI-GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeec---cchh-ccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 551 1 22333444444444322211110 1222 667778888887664332221 666778888877554
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.80 E-value=0.18 Score=45.04 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=18.5
Q ss_pred CCcceEEeeecC-----CcceEEEECCCcceEEEcceee
Q 014227 212 IPLKYLDIHYCY-----SMKEIEISASSLVSFRYSGKDI 245 (428)
Q Consensus 212 ~~L~~L~l~~c~-----~l~~i~i~ap~L~~L~~~~~~~ 245 (428)
++|+.|.++... .+..+...+|+|+++.+++...
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 455555554431 1333344567777777776644
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.02 E-value=0.78 Score=41.06 Aligned_cols=91 Identities=18% Similarity=-0.004 Sum_probs=53.9
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-cc-CCCCCCCccEEEEEeecCCCCchhHHHHH
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EF-GHWELPKLLHLKLTITEPNCESLLGLSFV 326 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 326 (428)
+..+|+|+++.+..+.......+ .+++..+++|++|+++++.+... .+ |.+.+.||..|.+..+.....+. .=..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l-~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~d-yre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGL-EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDD-YREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccc-eehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcccccc-HHHHH
Confidence 34566667776655432211111 12226679999999988865532 22 37888899999885543222222 22556
Q ss_pred HHhCCCccEEEEEEe
Q 014227 327 LKACPFLQKLVIKIW 341 (428)
Q Consensus 327 L~~~P~L~~L~i~~~ 341 (428)
+.-.|.|+.|+-...
T Consensus 139 f~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHhhhhcccccccc
Confidence 777888888876544
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.01 E-value=0.79 Score=46.41 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=36.2
Q ss_pred CccccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227 18 NMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56 (428)
Q Consensus 18 ~~~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 56 (428)
...|.++.||-++..+||++|+.++++..+.+|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457999999999999999999999999999999999864
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.59 E-value=0.32 Score=49.82 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.6
Q ss_pred CCcccceEEeeeEEee
Q 014227 162 GIKSLRSLCLNALKVS 177 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~ 177 (428)
.|.+|+.|.|.+|.+.
T Consensus 107 pF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLS 122 (1096)
T ss_pred cccceeeEEecCcchh
Confidence 4899999999999764
No 65
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=80.28 E-value=0.1 Score=43.61 Aligned_cols=98 Identities=20% Similarity=0.137 Sum_probs=53.5
Q ss_pred CcceEEEcceee---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEE
Q 014227 234 SLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHL 308 (428)
Q Consensus 234 ~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L 308 (428)
+|+.|.+.+..+ +..++.+|+|+.+.+..........- ++++|.|+.|++.+.......+| +..+.-|+.|
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 344444444322 34556667776666643322211111 17788888888887766555666 4455666666
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
.+.. .++..+..=.....+|+.|.+..
T Consensus 133 yl~d-----ndfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 133 YLGD-----NDFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred HhcC-----CCcccCChhhhhhcceeEEeecc
Confidence 6632 23333344445666777776653
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.13 E-value=0.99 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=13.6
Q ss_pred CcccceEEeeeEEeehHHHHHH
Q 014227 163 IKSLRSLCLNALKVSGEVLEFF 184 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~l 184 (428)
+++|++|+|.++.++++.+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4678888888888777665543
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.81 E-value=1.7 Score=37.60 Aligned_cols=62 Identities=26% Similarity=0.138 Sum_probs=36.1
Q ss_pred ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
..+++|.+|.++...+....-. ...+++|+.|.+..+......+ ..=|..||.|+.|.+.+.
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGN 123 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh---cchhccCCccceeeecCC
Confidence 5667777777766543322212 5566778888885543222111 223567888888888764
No 68
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=78.62 E-value=2.9 Score=27.39 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=29.8
Q ss_pred CCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227 302 LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
..+|+.+.+........+..-+..++++++.||++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 36899999965544445666778899999999999986
No 69
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=78.18 E-value=0.68 Score=48.73 Aligned_cols=59 Identities=20% Similarity=0.052 Sum_probs=31.8
Q ss_pred ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
...++++.|....+... .....+.-.+|..++++.+ ....++..+..|++|+.+.+...
T Consensus 216 ~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n-----~l~~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHN-----NLSNLPEWIGACANLEALNANHN 274 (1081)
T ss_pred ecCcchheeeeccCcce-eeccccccccceeeecchh-----hhhcchHHHHhcccceEecccch
Confidence 34455555555444222 2222444557777777332 23334566677888887777643
No 70
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=76.99 E-value=3 Score=39.84 Aligned_cols=93 Identities=24% Similarity=0.178 Sum_probs=59.8
Q ss_pred CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
|+|+++++++..+. -.+.++..++++++..+....++. ..+ +++.+|++|++.+..+....-. +.....|.+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~--~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS--GMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH--Hhh-hccccceeeeecCCeeEEEecccccccceeee
Confidence 67777777766442 246677778888776554433211 333 8999999999988765543322 667778888
Q ss_pred EEEEeecCCC-CchhHHHHHHH
Q 014227 308 LKLTITEPNC-ESLLGLSFVLK 328 (428)
Q Consensus 308 L~l~~~~~~~-~~~~~l~~lL~ 328 (428)
|.+..+-..+ ....++..-++
T Consensus 351 l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred eehccCcccCccchHHHHHHHh
Confidence 8885553322 45566777666
No 71
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.43 E-value=0.65 Score=44.28 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeee---------------------ecccC---CCCC
Q 014227 247 LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEV---------------------FMEFG---HWEL 302 (428)
Q Consensus 247 ~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~---------------------~~~~~---~~~~ 302 (428)
..+..+++|.-+.++.....++..-+ .++..|+.|+++...+. ...++ ....
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~----~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEEM----GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchhh----hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 34556777777777655444322111 44555777777654211 11111 3445
Q ss_pred CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
.+|++|++.. .+...+...+.+|.+|+.|++.+.+
T Consensus 505 ~nL~tLDL~n-----Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 505 RNLTTLDLQN-----NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhcceeccCC-----CchhhCChhhccccceeEEEecCCc
Confidence 5666666622 2455566677777777777777654
No 72
>PLN03150 hypothetical protein; Provisional
Probab=72.52 E-value=2.1 Score=44.53 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=44.6
Q ss_pred ccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEE---EECCCcceEEE
Q 014227 165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIE---ISASSLVSFRY 240 (428)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~ 240 (428)
.++.|+|.+..+... +..-+..+++|+.|.|.++...+.+. .-..+++|+.|++.++.....+. -..++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 356666666654321 22236677888888887765433221 11245677788877775322221 24567888877
Q ss_pred ccee
Q 014227 241 SGKD 244 (428)
Q Consensus 241 ~~~~ 244 (428)
.+..
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 6653
No 73
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=70.38 E-value=4.5 Score=25.48 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.0
Q ss_pred ccCCcceeEEeeee
Q 014227 277 CCFPQLKTLDLECC 290 (428)
Q Consensus 277 ~~~~~l~~L~l~~~ 290 (428)
..+++|+.|.++.+
T Consensus 21 ~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 21 SNLPNLETLNLSNN 34 (44)
T ss_dssp TTCTTSSEEEETSS
T ss_pred hCCCCCCEEEecCC
Confidence 34444444444433
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=65.04 E-value=1.6 Score=42.48 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=94.6
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcC-CcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE---ECCCcce
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSC-PHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI---SASSLVS 237 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~ap~L~~ 237 (428)
.++.++.|.+.+..+.+- ....... ++|+.|.+.+........-...++.|+.|.+..+. +..+.- ..++|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccC--ccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 356788888888876441 1122333 47888888776532211111245889999998887 344432 6788888
Q ss_pred EEEcceeee-eec--CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeec
Q 014227 238 FRYSGKDIK-LHV--GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITE 314 (428)
Q Consensus 238 L~~~~~~~~-~~~--~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 314 (428)
|.+.+..+. +.- .....|+++.+......... ..+ ..+.++..|.+...............++++.|.+..+.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~---~~~-~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELL---SSL-SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecc---hhh-hhcccccccccCCceeeeccchhccccccceecccccc
Confidence 888877553 221 23334777777655322111 111 45555566654444332222225556678888885543
Q ss_pred CCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 315 PNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 315 ~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
... . .. +....+++.|++...
T Consensus 267 i~~--i---~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 267 ISS--I---SS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccc--c---cc-ccccCccCEEeccCc
Confidence 222 1 12 567788888888764
No 75
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=63.51 E-value=11 Score=26.57 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
.+|+.+.+....+...+..-+..+++++|.||++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 5688888865433345566778899999999999998764
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=60.86 E-value=3.8 Score=19.92 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.9
Q ss_pred cccceeecccC
Q 014227 190 HLEHLYVANSS 200 (428)
Q Consensus 190 ~Le~L~L~~~~ 200 (428)
+|+.|+|.+|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555554
No 77
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=59.66 E-value=7.8 Score=29.27 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.6
Q ss_pred ccCCCCcHHHHHHHHhcCChHHHHH
Q 014227 21 DWFSKFPDDILVNIISRLTLKEAAR 45 (428)
Q Consensus 21 D~~s~LPd~iL~~Ils~L~~~d~~~ 45 (428)
..|+.||.|+-..||++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5799999999999999999998754
No 78
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=59.59 E-value=5.2 Score=35.96 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=35.7
Q ss_pred cCCCCcHHHHHHHHhcCC-hHHHHHHHHhhHHH------hhhccccceEEec
Q 014227 22 WFSKFPDDILVNIISRLT-LKEAARTSVLSSRW------KYLWNFTTALDFA 66 (428)
Q Consensus 22 ~~s~LPd~iL~~Ils~L~-~~d~~~~s~vskrW------r~lw~~~~~l~~~ 66 (428)
.+.+||.+++..|+.+++ -+|++.++.+-..- |.+|+.+....|.
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 488999999999999999 78998888764333 4578877767665
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=56.15 E-value=11 Score=29.70 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.2
Q ss_pred ccCCcceeEEee
Q 014227 277 CCFPQLKTLDLE 288 (428)
Q Consensus 277 ~~~~~l~~L~l~ 288 (428)
..+++++.+.+.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 455566666653
No 80
>PLN03150 hypothetical protein; Provisional
Probab=48.94 E-value=21 Score=37.24 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=24.2
Q ss_pred ccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
..+++|+.|+++.+.... .+| ...+++|+.|+|+.+.... .+...+..+++|+.|+++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNG----SIPESLGQLTSLRILNLNG 499 (623)
T ss_pred hCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCC----CCchHHhcCCCCCEEECcC
Confidence 344555555554442221 112 3444555555553321111 1123344555555555543
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.43 E-value=22 Score=35.73 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=57.1
Q ss_pred CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeee---cccCCCCCCCccEEEEEeecCCC----CchhHH
Q 014227 251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVF---MEFGHWELPKLLHLKLTITEPNC----ESLLGL 323 (428)
Q Consensus 251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l 323 (428)
+.|.+..+.+..+....++++..+. +..|+|++|+|+..+... .+++......|++|-+.++- .+ .....+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssls-q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP-lc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLS-QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP-LCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHH-HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc-cccchhhhHHHH
Confidence 4566666666666555566665666 889999999998873221 23335556678899886652 22 122355
Q ss_pred HHHHHhCCCccEEEEE
Q 014227 324 SFVLKACPFLQKLVIK 339 (428)
Q Consensus 324 ~~lL~~~P~L~~L~i~ 339 (428)
..+-+.+|+|..|+=.
T Consensus 294 ~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHhcchheeecCc
Confidence 6677799999888643
No 82
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.85 E-value=9 Score=27.78 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHhhHH--Hhhhcccc
Q 014227 26 FPDDILVNIISRLTLKEAARTSVLSSR--WKYLWNFT 60 (428)
Q Consensus 26 LPd~iL~~Ils~L~~~d~~~~s~vskr--Wr~lw~~~ 60 (428)
+||+.=.....++-.++.++..-+-++ |+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 556555666677788899998888655 99999854
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=39.93 E-value=22 Score=18.36 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=4.7
Q ss_pred ccceeeccc
Q 014227 191 LEHLYVANS 199 (428)
Q Consensus 191 Le~L~L~~~ 199 (428)
||.|+|.+|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=37.35 E-value=21 Score=19.80 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=16.1
Q ss_pred cccceEEeeeEEeehHHHHHH
Q 014227 164 KSLRSLCLNALKVSGEVLEFF 184 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~l 184 (428)
++|++|+|.+..+.++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 578999999998887765443
No 85
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=34.32 E-value=0.19 Score=47.72 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=48.4
Q ss_pred ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHH
Q 014227 248 HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSF 325 (428)
Q Consensus 248 ~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~ 325 (428)
.++++..|.++++......-+.. +.. ..++++..|+++..... .+| ...+++|..|+++.+. ..++..
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpa--e~~-~~L~~l~vLDLRdNklk--e~Pde~clLrsL~rLDlSNN~-----is~Lp~ 292 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPA--EHL-KHLNSLLVLDLRDNKLK--EVPDEICLLRSLERLDLSNND-----ISSLPY 292 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHH--HHh-cccccceeeeccccccc--cCchHHHHhhhhhhhcccCCc-----cccCCc
Confidence 45566667776664322211110 233 67888899998877443 344 6677889999885543 222333
Q ss_pred HHHhCCCccEEEEEEe
Q 014227 326 VLKACPFLQKLVIKIW 341 (428)
Q Consensus 326 lL~~~P~L~~L~i~~~ 341 (428)
-|.+. .|+.|.+.+.
T Consensus 293 sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGN 307 (565)
T ss_pred ccccc-eeeehhhcCC
Confidence 34455 6777777654
No 86
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=31.39 E-value=17 Score=34.99 Aligned_cols=43 Identities=16% Similarity=-0.053 Sum_probs=20.7
Q ss_pred CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCC
Q 014227 299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNR 345 (428)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~ 345 (428)
+..+.+|++|+|..+...... .-.++....|.+|.+-..++..
T Consensus 318 f~~ls~L~tL~L~~N~it~~~----~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQITTVA----PGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhccccceeeeecCCeeEEEe----cccccccceeeeeehccCcccC
Confidence 455566666666443222111 1223455556666665555443
No 87
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=30.97 E-value=10 Score=37.29 Aligned_cols=98 Identities=20% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEE--CCCcceEE
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEIS--ASSLVSFR 239 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~--ap~L~~L~ 239 (428)
.+.+|+.|++.+-.+.. +..++.+|++|+.|.|.+..-...-.+ ..++.|+.|.+.+.. +..+.-. .++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l-~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGL-STLTLLKELNLSGNL-ISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheeccccccccccch-hhccchhhheeccCc-chhccCCccchhhhccc
Confidence 46666666666655422 122255677777777766542211111 122446666665554 2222111 34555555
Q ss_pred Ecceee-eeec---CCCCCeeEEEEecc
Q 014227 240 YSGKDI-KLHV---GNVPQLVDVVIHGA 263 (428)
Q Consensus 240 ~~~~~~-~~~~---~~~p~L~~l~l~~~ 263 (428)
+.+... .+.. ..+.++..+++...
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCC
Confidence 544433 1222 44555555555443
No 88
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=28.56 E-value=11 Score=35.16 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227 23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56 (428)
Q Consensus 23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 56 (428)
+..+|+++++.|++++.-++++++|++|+|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 3479999999999999999999999999998753
No 89
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=23.59 E-value=68 Score=30.27 Aligned_cols=38 Identities=11% Similarity=0.415 Sum_probs=30.9
Q ss_pred ccCCCCcHHHHHHHHhcCC-hH-------HHHHHHHhhHHHhhhcc
Q 014227 21 DWFSKFPDDILVNIISRLT-LK-------EAARTSVLSSRWKYLWN 58 (428)
Q Consensus 21 D~~s~LPd~iL~~Ils~L~-~~-------d~~~~s~vskrWr~lw~ 58 (428)
+.+..||.+.|..|+.+.. .. ..+.++-+|+.||..-.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 4788999999999999987 22 46788899999998643
No 90
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.69 E-value=1.4e+02 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=15.8
Q ss_pred hhHHHHHHHhCCCccEEEEE
Q 014227 320 LLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 320 ~~~l~~lL~~~P~L~~L~i~ 339 (428)
...+..+++.||+|+.+.+-
T Consensus 30 N~Dif~Lv~~CP~lk~iqiP 49 (131)
T PF08004_consen 30 NKDIFSLVERCPNLKAIQIP 49 (131)
T ss_pred chHHHHHHHhCCCCeEEeCC
Confidence 34568889999999988874
No 91
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.21 E-value=25 Score=26.07 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHhhH--HHhhhcccc
Q 014227 25 KFPDDILVNIISRLTLKEAARTSVLSS--RWKYLWNFT 60 (428)
Q Consensus 25 ~LPd~iL~~Ils~L~~~d~~~~s~vsk--rWr~lw~~~ 60 (428)
++|.+....| -.++.+++.-+-+ +|+++|+-.
T Consensus 13 ~~~~~~~~~i----~a~Eka~a~eLq~~Gk~~~lWRv~ 46 (90)
T TIGR03221 13 DMPAEKAAAI----KAREKAYAQELQREGKWRHLWRVA 46 (90)
T ss_pred CCCHHHHHHH----HHHHHHHHHHHHhCCceEEEEEec
Confidence 3444444444 4578877776654 599999953
Done!