Query 014227
Match_columns 428
No_of_seqs 169 out of 1768
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 3.9E-21 1.3E-25 196.3 9.0 194 20-243 3-221 (594)
2 3ogk_B Coronatine-insensitive 99.8 2.4E-20 8.1E-25 190.5 8.7 148 24-200 14-175 (592)
3 2ast_B S-phase kinase-associat 99.7 8.3E-19 2.8E-23 166.1 6.2 37 21-57 7-43 (336)
4 4fcg_A Uncharacterized protein 99.0 4.8E-10 1.6E-14 105.4 5.8 172 160-341 100-287 (328)
5 3ogk_B Coronatine-insensitive 98.9 1.1E-08 3.8E-13 103.9 12.8 36 98-136 113-148 (592)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2E-09 6.7E-14 71.6 3.9 38 20-57 6-43 (53)
7 2p1m_B Transport inhibitor res 98.8 7.6E-10 2.6E-14 112.6 2.6 102 162-263 103-221 (594)
8 2z80_A TOLL-like receptor 2, v 98.7 6E-08 2E-12 91.9 11.8 200 159-370 95-311 (353)
9 4fcg_A Uncharacterized protein 98.6 7E-09 2.4E-13 97.4 2.6 188 125-339 103-309 (328)
10 2ca6_A RAN GTPase-activating p 98.6 2.2E-09 7.6E-14 103.2 -1.9 231 160-396 56-338 (386)
11 4fmz_A Internalin; leucine ric 98.6 2.1E-08 7.1E-13 94.8 4.9 211 160-398 106-321 (347)
12 2z66_A Variable lymphocyte rec 98.6 2.7E-08 9.3E-13 92.2 5.3 210 160-383 48-273 (306)
13 4fmz_A Internalin; leucine ric 98.5 6.6E-08 2.3E-12 91.3 6.0 210 160-399 84-298 (347)
14 1z7x_W Ribonuclease inhibitor; 98.5 1.3E-08 4.6E-13 100.0 1.0 262 119-398 20-323 (461)
15 1o6v_A Internalin A; bacterial 98.5 2.1E-07 7.1E-12 91.7 9.6 34 359-398 308-341 (466)
16 2ast_B S-phase kinase-associat 98.5 1.9E-08 6.6E-13 94.5 1.4 177 160-341 89-282 (336)
17 1ozn_A Reticulon 4 receptor; N 98.5 9.4E-08 3.2E-12 87.6 4.5 173 160-341 52-235 (285)
18 1o6v_A Internalin A; bacterial 98.4 1.9E-07 6.4E-12 92.1 6.7 216 160-398 86-319 (466)
19 1h6u_A Internalin H; cell adhe 98.4 1E-07 3.6E-12 88.5 4.6 166 160-342 59-228 (308)
20 2z80_A TOLL-like receptor 2, v 98.4 6.5E-07 2.2E-11 84.7 10.2 170 163-341 51-232 (353)
21 3o53_A Protein LRIM1, AGAP0063 98.4 4.4E-07 1.5E-11 84.5 8.7 242 114-396 20-270 (317)
22 3rgz_A Protein brassinosteroid 98.4 5.5E-08 1.9E-12 102.0 2.3 67 157-223 93-162 (768)
23 3o6n_A APL1; leucine-rich repe 98.4 7.2E-07 2.5E-11 85.6 10.0 166 160-340 137-304 (390)
24 2ca6_A RAN GTPase-activating p 98.4 2E-08 6.9E-13 96.4 -1.1 181 161-342 91-314 (386)
25 1z7x_W Ribonuclease inhibitor; 98.4 3.3E-08 1.1E-12 97.1 0.2 161 234-398 86-266 (461)
26 2z63_A TOLL-like receptor 4, v 98.4 9.7E-07 3.3E-11 89.0 10.3 206 162-386 323-547 (570)
27 3vq2_A TLR4, TOLL-like recepto 98.4 1.3E-07 4.4E-12 96.4 3.5 97 160-262 303-408 (606)
28 1ozn_A Reticulon 4 receptor; N 98.4 2.3E-07 7.8E-12 85.0 4.7 204 163-383 31-250 (285)
29 1h6u_A Internalin H; cell adhe 98.4 2.6E-07 8.9E-12 85.8 5.2 186 162-371 39-228 (308)
30 3zyi_A Leucine-rich repeat-con 98.4 1E-07 3.4E-12 93.6 2.1 13 162-174 97-109 (452)
31 3zyj_A Leucine-rich repeat-con 98.3 1.1E-07 3.8E-12 92.9 2.3 11 329-339 277-287 (440)
32 3oja_B Anopheles plasmodium-re 98.3 9.4E-07 3.2E-11 89.9 9.0 171 160-341 143-334 (597)
33 3zyj_A Leucine-rich repeat-con 98.3 3.2E-07 1.1E-11 89.6 5.0 206 159-383 83-304 (440)
34 3o6n_A APL1; leucine-rich repe 98.3 1.1E-06 3.8E-11 84.3 8.6 142 160-311 113-256 (390)
35 2id5_A Lingo-1, leucine rich r 98.3 5.1E-07 1.7E-11 89.1 6.3 217 159-398 51-282 (477)
36 2z81_A CD282 antigen, TOLL-lik 98.3 1.6E-06 5.6E-11 87.0 10.0 223 163-396 25-259 (549)
37 3zyi_A Leucine-rich repeat-con 98.3 2.7E-07 9.2E-12 90.5 4.0 82 160-243 119-206 (452)
38 3o53_A Protein LRIM1, AGAP0063 98.3 6.7E-07 2.3E-11 83.3 6.4 212 162-399 32-248 (317)
39 3v47_A TOLL-like receptor 5B a 98.3 1E-06 3.4E-11 86.3 7.5 65 159-223 98-165 (455)
40 3oja_A Leucine-rich immune mol 98.3 5E-07 1.7E-11 89.5 5.1 185 127-341 35-224 (487)
41 3bz5_A Internalin-J, INLJ; leu 98.3 7.3E-07 2.5E-11 87.5 6.2 159 161-341 82-243 (457)
42 3oja_A Leucine-rich immune mol 98.3 1.1E-06 3.8E-11 87.0 7.2 164 160-342 76-248 (487)
43 2id5_A Lingo-1, leucine rich r 98.3 7.2E-07 2.5E-11 88.0 5.8 176 159-342 147-331 (477)
44 2z81_A CD282 antigen, TOLL-lik 98.3 2.6E-06 8.8E-11 85.5 9.8 179 159-341 69-261 (549)
45 2ra8_A Uncharacterized protein 98.2 1.9E-07 6.6E-12 88.4 0.9 61 161-223 136-204 (362)
46 3oja_B Anopheles plasmodium-re 98.2 2.3E-06 7.8E-11 87.0 8.7 172 158-341 117-311 (597)
47 4ezg_A Putative uncharacterize 98.2 6.7E-07 2.3E-11 77.1 4.1 57 277-340 133-190 (197)
48 3t6q_A CD180 antigen; protein- 98.2 8.5E-08 2.9E-12 97.7 -2.4 107 155-263 292-410 (606)
49 2z66_A Variable lymphocyte rec 98.2 1.5E-06 5.2E-11 80.3 5.6 218 163-398 27-258 (306)
50 2z63_A TOLL-like receptor 4, v 98.2 7.1E-07 2.4E-11 90.0 3.6 172 211-399 346-529 (570)
51 2xwt_C Thyrotropin receptor; s 98.2 1.1E-06 3.7E-11 78.2 4.4 190 164-369 31-235 (239)
52 1ogq_A PGIP-2, polygalacturona 98.2 4.5E-07 1.5E-11 84.4 1.8 31 282-312 199-230 (313)
53 2z7x_B TOLL-like receptor 1, v 98.2 4.4E-06 1.5E-10 83.3 8.9 216 160-398 216-478 (520)
54 3rfs_A Internalin B, repeat mo 98.1 6.4E-07 2.2E-11 81.5 2.4 61 160-223 59-120 (272)
55 1h6t_A Internalin B; cell adhe 98.1 1.5E-06 5.2E-11 79.9 4.9 147 160-341 64-210 (291)
56 3g06_A SSPH2 (leucine-rich rep 98.1 5.5E-06 1.9E-10 84.2 9.3 10 126-135 61-70 (622)
57 3goz_A Leucine-rich repeat-con 98.1 8.6E-07 2.9E-11 84.2 3.0 178 162-341 48-263 (362)
58 4glp_A Monocyte differentiatio 98.1 2.2E-06 7.4E-11 79.5 5.7 109 99-223 66-180 (310)
59 3rfs_A Internalin B, repeat mo 98.1 8.7E-07 3E-11 80.6 2.9 169 162-342 39-216 (272)
60 4eco_A Uncharacterized protein 98.1 2E-06 6.7E-11 88.2 5.6 194 126-341 249-467 (636)
61 4ecn_A Leucine-rich repeat pro 98.1 1.6E-07 5.6E-12 98.8 -2.5 151 156-313 440-629 (876)
62 1ogq_A PGIP-2, polygalacturona 98.1 8.3E-07 2.8E-11 82.5 2.6 192 126-341 76-278 (313)
63 2o6q_A Variable lymphocyte rec 98.1 7.9E-07 2.7E-11 80.8 2.1 58 164-223 37-96 (270)
64 3rgz_A Protein brassinosteroid 98.1 1.9E-06 6.5E-11 90.3 5.1 176 161-341 148-353 (768)
65 2z7x_B TOLL-like receptor 1, v 98.1 3.7E-05 1.3E-09 76.6 14.2 99 164-264 21-126 (520)
66 3goz_A Leucine-rich repeat-con 98.1 8.5E-07 2.9E-11 84.2 1.9 173 163-337 79-287 (362)
67 3t6q_A CD180 antigen; protein- 98.1 1E-06 3.4E-11 89.7 2.5 147 159-310 273-432 (606)
68 1m9s_A Internalin B; cell inva 98.1 9.5E-07 3.2E-11 89.6 1.9 99 160-263 61-163 (605)
69 3bz5_A Internalin-J, INLJ; leu 98.0 4.4E-06 1.5E-10 81.9 6.1 97 161-263 103-201 (457)
70 1wwl_A Monocyte differentiatio 98.0 1.5E-06 5.1E-11 80.7 2.2 137 161-311 118-261 (312)
71 4ecn_A Leucine-rich repeat pro 98.0 4.2E-06 1.4E-10 88.2 5.6 192 126-341 491-707 (876)
72 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.2E-11 71.5 3.0 63 162-224 83-151 (176)
73 2xwt_C Thyrotropin receptor; s 98.0 6.6E-06 2.3E-10 73.1 6.0 167 160-339 51-234 (239)
74 3v47_A TOLL-like receptor 5B a 98.0 3E-06 1E-10 82.9 3.9 137 233-384 275-421 (455)
75 2z62_A TOLL-like receptor 4, v 98.0 1.2E-06 4.2E-11 79.7 1.0 123 164-291 28-160 (276)
76 1h6t_A Internalin B; cell adhe 98.0 4.7E-06 1.6E-10 76.5 4.5 79 160-243 86-166 (291)
77 2o6q_A Variable lymphocyte rec 97.9 4.4E-06 1.5E-10 75.8 4.0 102 159-262 56-166 (270)
78 2e31_A FBS1, F-box only protei 97.9 3.9E-06 1.3E-10 76.0 3.4 36 21-56 49-85 (297)
79 3vq2_A TLR4, TOLL-like recepto 97.9 2.5E-06 8.4E-11 86.8 2.3 122 160-290 281-409 (606)
80 1xku_A Decorin; proteoglycan, 97.9 4.1E-06 1.4E-10 78.3 3.5 61 160-223 72-132 (330)
81 1m9s_A Internalin B; cell inva 97.9 3.5E-06 1.2E-10 85.4 3.2 138 163-311 42-183 (605)
82 1wwl_A Monocyte differentiatio 97.9 1.4E-06 4.9E-11 80.9 -0.1 213 166-398 65-306 (312)
83 3l2o_B F-box only protein 4; s 97.9 2.7E-06 9.1E-11 76.2 1.4 34 23-56 5-38 (312)
84 1p9a_G Platelet glycoprotein I 97.9 2.7E-06 9.2E-11 78.1 1.5 98 163-263 30-134 (290)
85 3j0a_A TOLL-like receptor 5; m 97.9 6.5E-05 2.2E-09 79.5 11.9 76 233-311 266-346 (844)
86 1xeu_A Internalin C; cellular 97.9 1E-05 3.5E-10 73.1 4.9 124 161-314 60-183 (263)
87 2z62_A TOLL-like receptor 4, v 97.9 3.1E-06 1.1E-10 77.0 1.3 176 160-342 48-235 (276)
88 3e4g_A ATP synthase subunit S, 97.9 1.2E-06 3.9E-11 73.4 -1.5 63 163-226 60-128 (176)
89 4eco_A Uncharacterized protein 97.8 1.7E-06 5.7E-11 88.7 -0.8 174 156-340 346-545 (636)
90 1xku_A Decorin; proteoglycan, 97.8 7.3E-06 2.5E-10 76.6 3.5 169 163-340 51-225 (330)
91 4ezg_A Putative uncharacterize 97.8 1.2E-05 4.2E-10 69.1 4.3 141 161-312 41-190 (197)
92 1ziw_A TOLL-like receptor 3; i 97.8 2.6E-06 8.8E-11 87.9 -0.2 35 277-311 477-512 (680)
93 2ft3_A Biglycan; proteoglycan, 97.8 3.9E-06 1.3E-10 78.5 0.9 80 160-243 74-157 (332)
94 2ft3_A Biglycan; proteoglycan, 97.8 4.9E-06 1.7E-10 77.9 1.4 102 163-266 53-160 (332)
95 3g06_A SSPH2 (leucine-rich rep 97.8 2.4E-05 8.3E-10 79.4 6.4 114 212-341 181-294 (622)
96 4glp_A Monocyte differentiatio 97.8 2.4E-06 8.3E-11 79.2 -1.3 218 164-397 64-303 (310)
97 2ell_A Acidic leucine-rich nuc 97.7 4.1E-06 1.4E-10 70.0 0.1 126 163-290 23-157 (168)
98 1p9a_G Platelet glycoprotein I 97.7 1.3E-05 4.4E-10 73.6 3.4 165 160-331 51-224 (290)
99 1ziw_A TOLL-like receptor 3; i 97.7 9.6E-06 3.3E-10 83.7 2.2 176 158-340 399-593 (680)
100 3j0a_A TOLL-like receptor 5; m 97.7 4.1E-05 1.4E-09 81.0 6.4 206 157-383 331-572 (844)
101 3m19_A Variable lymphocyte rec 97.7 2.7E-05 9.3E-10 69.7 4.2 145 164-313 35-189 (251)
102 1jl5_A Outer protein YOPM; leu 97.6 9.2E-05 3.2E-09 72.4 7.8 133 164-311 131-265 (454)
103 2je0_A Acidic leucine-rich nuc 97.5 4.3E-06 1.5E-10 68.3 -2.5 60 163-223 16-75 (149)
104 3un9_A NLR family member X1; l 97.5 1E-05 3.6E-10 76.9 -0.3 166 163-341 71-249 (372)
105 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 5.2E-05 1.8E-09 76.3 4.4 214 162-398 247-507 (562)
106 1xeu_A Internalin C; cellular 97.5 4E-05 1.4E-09 69.2 3.2 146 161-342 38-183 (263)
107 3v7d_B Cell division control p 97.5 2.5E-05 8.4E-10 76.3 1.9 38 19-56 11-48 (464)
108 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00029 1E-08 70.8 8.7 61 160-223 72-132 (562)
109 2ell_A Acidic leucine-rich nuc 97.4 0.00018 6E-09 59.9 5.7 132 187-342 22-158 (168)
110 2je0_A Acidic leucine-rich nuc 97.3 8.7E-05 3E-09 60.4 2.7 128 187-338 15-147 (149)
111 1jl5_A Outer protein YOPM; leu 97.3 0.00013 4.4E-09 71.4 4.2 154 163-341 214-367 (454)
112 4ay9_X Follicle-stimulating ho 97.3 6.9E-05 2.3E-09 70.6 2.2 171 163-340 29-211 (350)
113 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.00014 4.7E-09 70.6 4.3 37 19-55 15-51 (445)
114 1p22_A F-BOX/WD-repeat protein 97.3 6.9E-05 2.4E-09 72.6 2.1 37 19-55 7-47 (435)
115 1a9n_A U2A', U2A'; complex (nu 97.3 4.9E-05 1.7E-09 63.9 0.6 60 161-223 16-75 (176)
116 3cvr_A Invasion plasmid antige 97.2 0.00016 5.5E-09 72.6 3.8 31 212-243 140-170 (571)
117 1a9n_A U2A', U2A'; complex (nu 97.2 0.00046 1.6E-08 57.9 5.4 133 186-341 16-150 (176)
118 2v70_A SLIT-2, SLIT homolog 2 97.1 0.00013 4.3E-09 63.9 1.4 147 163-329 31-180 (220)
119 3m19_A Variable lymphocyte rec 97.1 0.00016 5.4E-09 64.6 2.0 86 249-341 79-165 (251)
120 3e6j_A Variable lymphocyte rec 97.1 0.00027 9.2E-09 62.2 3.5 144 163-329 39-187 (229)
121 4g8a_A TOLL-like receptor 4; l 97.1 0.00019 6.5E-09 72.9 2.8 140 233-386 445-595 (635)
122 3un9_A NLR family member X1; l 97.0 2.6E-05 8.9E-10 74.2 -4.0 137 163-313 100-249 (372)
123 2o6s_A Variable lymphocyte rec 96.9 0.00022 7.7E-09 61.5 1.3 128 163-312 27-157 (208)
124 4ay9_X Follicle-stimulating ho 96.9 0.0012 4E-08 62.1 5.9 56 277-339 199-254 (350)
125 4g8a_A TOLL-like receptor 4; l 96.9 0.00092 3.1E-08 67.8 5.6 36 162-199 395-430 (635)
126 2v9t_B SLIT homolog 2 protein 96.9 0.0014 4.9E-08 57.1 6.0 148 163-331 31-181 (220)
127 1ds9_A Outer arm dynein; leuci 96.7 7.2E-05 2.4E-09 64.2 -3.7 61 277-337 112-180 (198)
128 1ds9_A Outer arm dynein; leuci 96.6 3.2E-05 1.1E-09 66.5 -6.7 60 161-223 45-104 (198)
129 3sb4_A Hypothetical leucine ri 96.5 0.0052 1.8E-07 57.0 7.2 79 252-339 225-305 (329)
130 2v9t_B SLIT homolog 2 protein 96.4 0.0021 7.3E-08 55.9 4.1 35 277-311 101-136 (220)
131 2o6s_A Variable lymphocyte rec 96.3 0.00078 2.7E-08 58.0 0.5 63 160-223 48-111 (208)
132 3cvr_A Invasion plasmid antige 96.2 0.0015 5E-08 65.6 2.1 113 163-291 79-191 (571)
133 2xot_A Amphoterin-induced prot 96.2 0.0016 5.6E-08 61.4 2.3 126 163-292 38-175 (361)
134 3e6j_A Variable lymphocyte rec 96.2 0.0034 1.2E-07 54.9 4.0 142 233-390 40-192 (229)
135 3sb4_A Hypothetical leucine ri 96.1 0.011 3.6E-07 54.9 7.0 58 277-339 223-282 (329)
136 2xot_A Amphoterin-induced prot 95.9 0.0069 2.4E-07 57.0 5.1 145 189-342 39-200 (361)
137 1io0_A Tropomodulin; LRR prote 95.9 0.0034 1.2E-07 53.0 2.6 63 277-339 90-159 (185)
138 2ra8_A Uncharacterized protein 95.9 0.0072 2.4E-07 56.9 4.9 76 251-330 250-331 (362)
139 2v70_A SLIT-2, SLIT homolog 2 95.8 0.0071 2.4E-07 52.6 4.4 86 249-341 77-163 (220)
140 1dce_A Protein (RAB geranylger 95.7 0.0052 1.8E-07 61.7 3.3 147 182-337 402-566 (567)
141 1dce_A Protein (RAB geranylger 95.2 0.0037 1.3E-07 62.8 0.5 101 165-291 442-544 (567)
142 1w8a_A SLIT protein; signaling 95.0 0.0094 3.2E-07 50.5 2.3 61 163-223 28-89 (192)
143 2wfh_A SLIT homolog 2 protein 94.5 0.025 8.6E-07 47.9 3.7 53 277-329 99-153 (193)
144 4fdw_A Leucine rich hypothetic 94.5 0.038 1.3E-06 52.8 5.4 157 165-338 158-330 (401)
145 2o6r_A Variable lymphocyte rec 94.3 0.025 8.6E-07 47.0 3.2 10 213-222 29-38 (177)
146 2wfh_A SLIT homolog 2 protein 94.3 0.02 6.8E-07 48.6 2.5 84 250-340 51-135 (193)
147 4b8c_D Glucose-repressible alc 94.1 0.0062 2.1E-07 63.1 -1.2 105 159-267 219-330 (727)
148 4b8c_D Glucose-repressible alc 94.0 0.011 3.8E-07 61.1 0.4 60 183-243 218-280 (727)
149 1w8a_A SLIT protein; signaling 94.0 0.049 1.7E-06 46.0 4.4 62 249-313 74-136 (192)
150 1io0_A Tropomodulin; LRR prote 93.8 0.018 6E-07 48.5 1.2 124 273-400 30-163 (185)
151 2o6r_A Variable lymphocyte rec 93.7 0.058 2E-06 44.7 4.3 60 277-340 49-109 (177)
152 3g39_A Variable lymphocyte rec 93.6 0.087 3E-06 43.4 5.2 98 233-333 30-134 (170)
153 2r9u_A Variable lymphocyte rec 91.4 0.27 9.3E-06 40.6 5.4 96 233-331 33-135 (174)
154 4fs7_A Uncharacterized protein 91.4 0.16 5.6E-06 48.1 4.6 97 277-393 294-393 (394)
155 3g39_A Variable lymphocyte rec 90.3 0.15 5.1E-06 41.9 2.8 84 252-342 29-113 (170)
156 3rw6_A Nuclear RNA export fact 90.3 0.13 4.3E-06 46.0 2.4 86 251-338 168-258 (267)
157 2r9u_A Variable lymphocyte rec 89.4 0.2 6.9E-06 41.4 2.9 82 253-341 33-115 (174)
158 4fdw_A Leucine rich hypothetic 88.7 0.48 1.6E-05 45.0 5.4 12 327-338 296-307 (401)
159 4fs7_A Uncharacterized protein 83.8 0.94 3.2E-05 42.7 4.6 168 159-339 180-374 (394)
160 2ifg_A High affinity nerve gro 81.5 2 7E-05 39.4 5.9 77 249-328 52-129 (347)
161 3rw6_A Nuclear RNA export fact 76.1 0.57 2E-05 41.7 0.2 39 162-200 168-207 (267)
162 2ifg_A High affinity nerve gro 73.3 0.9 3.1E-05 41.9 0.8 40 160-200 27-67 (347)
163 1pgv_A TMD-1, tropomodulin TMD 68.6 2.2 7.6E-05 35.8 2.1 124 273-401 35-170 (197)
164 4gt6_A Cell surface protein; l 60.6 5.8 0.0002 37.1 3.6 71 233-310 311-385 (394)
165 1pgv_A TMD-1, tropomodulin TMD 55.6 6.7 0.00023 32.9 2.7 63 277-339 95-165 (197)
166 4gt6_A Cell surface protein; l 54.9 15 0.00053 34.1 5.5 123 249-396 261-386 (394)
167 4h09_A Hypothetical leucine ri 48.5 15 0.00051 33.9 4.3 81 249-338 259-340 (379)
168 4h09_A Hypothetical leucine ri 31.3 22 0.00075 32.7 2.4 60 248-310 281-340 (379)
169 2agh_C Zinc finger protein HRX 25.1 33 0.0011 18.2 1.3 17 377-393 9-25 (31)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=3.9e-21 Score=196.33 Aligned_cols=194 Identities=14% Similarity=0.209 Sum_probs=121.5
Q ss_pred cccCCCCcHHHHHHHHhcCC-hHHHHHHHHhhHHHhhhcc-ccceEEecCCCCCCCCCChhhHHHHHHHHHHHHhhCCCC
Q 014227 20 EDWFSKFPDDILVNIISRLT-LKEAARTSVLSSRWKYLWN-FTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGS 97 (428)
Q Consensus 20 ~D~~s~LPd~iL~~Ils~L~-~~d~~~~s~vskrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 97 (428)
.|+|+.|||||+.+||+||| ++|++++++|||||+++.. ....+++...... . ...++.+. +
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--------~------~~~~~~~~--~ 66 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--------S------PATVIRRF--P 66 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--------C------HHHHHHHC--T
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--------C------HHHHHhhC--C
Confidence 58999999999999999999 9999999999999998732 2234454422110 0 01223333 3
Q ss_pred CeeEEEEEeecC--------CCccchHHHHHHHHHh--CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccc
Q 014227 98 NINKFRIRCTLD--------NSHGRDITNWIYTATA--KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLR 167 (428)
Q Consensus 98 ~l~~l~l~~~~~--------~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~ 167 (428)
.++.+.+..... ..+...+..|+..... +++++|++..+... . ..+..+ ...|++|+
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~---~-~~~~~l---------~~~~~~L~ 133 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT---D-DCLELI---------AKSFKNFK 133 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---H-HHHHHH---------HHHCTTCC
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc---H-HHHHHH---------HHhCCCCc
Confidence 388888875310 1122456678887664 58999999754321 1 111111 11489999
Q ss_pred eEEeeeE-EeehHHHHHHHhcCCcccceeecccCCcee-----e-EEecCCCCcceEEeeecC-C-----cceEEEECCC
Q 014227 168 SLCLNAL-KVSGEVLEFFIHSCPHLEHLYVANSSELLS-----L-KVVGSSIPLKYLDIHYCY-S-----MKEIEISASS 234 (428)
Q Consensus 168 ~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-----l-~i~~~~~~L~~L~l~~c~-~-----l~~i~i~ap~ 234 (428)
+|+|.+| .+.+..+..++.+||+|++|+|.+|. ++. + .+...+++|++|++.+|. . +..+...+|+
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 9999999 57777888889999999999999986 221 1 222355789999888775 1 1122223577
Q ss_pred cceEEEcce
Q 014227 235 LVSFRYSGK 243 (428)
Q Consensus 235 L~~L~~~~~ 243 (428)
|+.|++.++
T Consensus 213 L~~L~L~~~ 221 (594)
T 2p1m_B 213 LKSLKLNRA 221 (594)
T ss_dssp CCEEECCTT
T ss_pred CcEEecCCC
Confidence 888777654
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=2.4e-20 Score=190.47 Aligned_cols=148 Identities=15% Similarity=0.269 Sum_probs=85.9
Q ss_pred CCCcHHHHHHHHhcC-ChHHHHHHHHhhHHHhhhccccc-eEEecCCCCCCCCCChhhHHHHHHHHHHHHhhCCCCCeeE
Q 014227 24 SKFPDDILVNIISRL-TLKEAARTSVLSSRWKYLWNFTT-ALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINK 101 (428)
Q Consensus 24 s~LPd~iL~~Ils~L-~~~d~~~~s~vskrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~ 101 (428)
++||||++.+||+|| +++|++++++|||||++++...+ .+.+... +...+..++.+.+. ++.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~--L~~ 77 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC--------------YTATPDRLSRRFPN--LRS 77 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG--------------GGSCHHHHHHHCTT--CSE
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec--------------cccChHHHHHhCCC--CeE
Confidence 389999999999999 79999999999999999865432 2222200 01122334444433 888
Q ss_pred EEEEeecC--------CCccchHHHHHHHHHh--CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcc-cceEE
Q 014227 102 FRIRCTLD--------NSHGRDITNWIYTATA--KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKS-LRSLC 170 (428)
Q Consensus 102 l~l~~~~~--------~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~-L~~L~ 170 (428)
+.+..... .........|+..... +++++|++..+... ...+ .. +. ..|++ |++|+
T Consensus 78 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~---~~~~-~~-l~--------~~~~~~L~~L~ 144 (592)
T 3ogk_B 78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS---DLDL-DR-LA--------KARADDLETLK 144 (592)
T ss_dssp EEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHH-HH-HH--------HHHGGGCCEEE
T ss_pred EEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec---HHHH-HH-HH--------HhccccCcEEE
Confidence 88864210 1222345567776653 58888888654221 0000 00 00 01333 66666
Q ss_pred eeeEE-eehHHHHHHHhcCCcccceeecccC
Q 014227 171 LNALK-VSGEVLEFFIHSCPHLEHLYVANSS 200 (428)
Q Consensus 171 L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (428)
|.++. +.+..+..+..+||+|++|+|.+|.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 66654 4445555555666666666666653
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=8.3e-19 Score=166.12 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=34.7
Q ss_pred ccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227 21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW 57 (428)
Q Consensus 21 D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw 57 (428)
..|+.||||++.+||++|+.+|+++++.|||+|+++.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999984
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.96 E-value=4.8e-10 Score=105.38 Aligned_cols=172 Identities=20% Similarity=0.197 Sum_probs=100.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE----------
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE---------- 229 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---------- 229 (428)
+..+++|++|+|.+..+. .+...+..+++|+.|+|.++........-..+++|+.|++.+|...+.+.
T Consensus 100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 344677777777766554 22223566677777777766432110011234667777777765333221
Q ss_pred --EECCCcceEEEcceee---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCC
Q 014227 230 --ISASSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELP 303 (428)
Q Consensus 230 --i~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~ 303 (428)
-..++|+.|++.+..+ +-.+.++++|+.+++..+....+.. -+ ..+++|+.|+++.+......-. ...++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP---AI-HHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG---GG-GGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch---hh-ccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 1367788887776543 2245677888888887665543221 12 6788888888877643322211 56778
Q ss_pred CccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 304 KLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
+|++|+|..+.... .+..-+..+++|+.|+|..+
T Consensus 254 ~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 254 PLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTC
T ss_pred CCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCC
Confidence 88888884432111 11223578888888888764
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.87 E-value=1.1e-08 Score=103.89 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=21.3
Q ss_pred CeeEEEEEeecCCCccchHHHHHHHHHhCCCeEEEEEeC
Q 014227 98 NINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFW 136 (428)
Q Consensus 98 ~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~ 136 (428)
.++.+.+... .-.+....|+......++++|++..+
T Consensus 113 ~L~~L~L~~~---~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 113 QLKSVHFRRM---IVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp TCCEEEEESC---BCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred CCCeEEeecc---EecHHHHHHHHHhccccCcEEECcCC
Confidence 3888887632 11233445565554456999988654
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.84 E-value=2e-09 Score=71.62 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=33.3
Q ss_pred cccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227 20 EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW 57 (428)
Q Consensus 20 ~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw 57 (428)
.+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999753
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.84 E-value=7.6e-10 Score=112.56 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=74.6
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee---EEecCCCCcceEEeeecCC-------cceEEEE
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL---KVVGSSIPLKYLDIHYCYS-------MKEIEIS 231 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~-------l~~i~i~ 231 (428)
.+++|++|+|.++.+.+..+..+..+||+|++|.|.+|..++.. .+...+++|++|++.+|.. +..+...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 58999999999999988888887778999999999999755431 2223579999999998861 1222224
Q ss_pred CCCcceEEEccee--ee-----eecCCCCCeeEEEEecc
Q 014227 232 ASSLVSFRYSGKD--IK-----LHVGNVPQLVDVVIHGA 263 (428)
Q Consensus 232 ap~L~~L~~~~~~--~~-----~~~~~~p~L~~l~l~~~ 263 (428)
.++|++|++.+.. +. .....+|+|+.+.+..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6799999987664 11 11234688888888654
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.73 E-value=6e-08 Score=91.91 Aligned_cols=200 Identities=14% Similarity=0.100 Sum_probs=132.7
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecCCcceEEE----EC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCYSMKEIEI----SA 232 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~a 232 (428)
.+.++++|++|+|.+..+.+- ....+.++++|+.|.+.++....... .-..+++|+.|++.++..+..+.. ..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 466789999999999877542 12347789999999999885332111 223568999999999864555422 24
Q ss_pred CCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC----CCCCCC
Q 014227 233 SSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG----HWELPK 304 (428)
Q Consensus 233 p~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~----~~~~~~ 304 (428)
++|+.|++.+... +..+.++++|+++++..+....+.. .+. ..+++|+.|+++.+........ ......
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE--IFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH--HHH-HHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh--hhh-hhcccccEEECCCCccccccccccccccccch
Confidence 7888888876643 2346678999999998776544221 122 6789999999988754332211 344667
Q ss_pred ccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEeee
Q 014227 305 LLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHEF 370 (428)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~f 370 (428)
++.+.+............+...+..+++|+.|++.... ... +|.. ...+|+.+.+.+-
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-------l~~-i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-------LKS-VPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-------CCC-CCTTTTTTCTTCCEEECCSS
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-------CCc-cCHHHHhcCCCCCEEEeeCC
Confidence 88888866543333444566678899999999997542 111 3432 2578888888863
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.65 E-value=7e-09 Score=97.38 Aligned_cols=188 Identities=16% Similarity=0.199 Sum_probs=128.5
Q ss_pred hCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee
Q 014227 125 AKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS 204 (428)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~ 204 (428)
-.+++.|++...... . +|..+..+++|++|+|.+..+. .+..-+.++++|+.|.|.+|...+.
T Consensus 103 l~~L~~L~L~~n~l~-----~----------lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-----E----------LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp GTTCSEEEEESSCCC-----C----------CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred CCCCCEEECCCCCcc-----c----------hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc
Confidence 357888888654321 2 3344567999999999998865 3333478899999999999876553
Q ss_pred eEEe----------cCCCCcceEEeeecCCcceEE---EECCCcceEEEcceee---eeecCCCCCeeEEEEeccCcch-
Q 014227 205 LKVV----------GSSIPLKYLDIHYCYSMKEIE---ISASSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQ- 267 (428)
Q Consensus 205 l~i~----------~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~- 267 (428)
+... ..+++|+.|++.++. +..+. -..++|+.|++.+..+ +-.+..+++|+.+++..+....
T Consensus 166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred cChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh
Confidence 3111 125899999999986 33331 1357999999987744 2246788999999997654432
Q ss_pred hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227 268 VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 268 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
+. ..+ ..+++|+.|+++.+.... .+| ...+++|++|+|..+... ..+..-+..+|+|+.+.+.
T Consensus 245 ~p---~~~-~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~----~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 245 YP---PIF-GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNL----SRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CC---CCT-TCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTC----CCCCGGGGGSCTTCEEECC
T ss_pred hH---HHh-cCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCch----hhccHHHhhccCceEEeCC
Confidence 11 223 788999999998764322 233 677899999999543211 1234456789999998875
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.62 E-value=2.2e-09 Score=103.18 Aligned_cols=231 Identities=15% Similarity=0.096 Sum_probs=133.9
Q ss_pred CCCCcccceEEeeeEEee---h------HHHHHHHhcCCcccceeecccCCce----ee-EEecCCCCcceEEeeecCCc
Q 014227 160 LSGIKSLRSLCLNALKVS---G------EVLEFFIHSCPHLEHLYVANSSELL----SL-KVVGSSIPLKYLDIHYCYSM 225 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~L~~~~~~~----~l-~i~~~~~~L~~L~l~~c~~l 225 (428)
+..+++|++|+|.++.+. + ..+...+..+++|+.|.|.++.... .+ ..-..+++|++|.+.+|.-
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l- 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL- 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-
Confidence 446889999999887432 1 1244446788999999998876322 01 1112458899999988862
Q ss_pred ceEE---E-EC-------------CCcceEEEcceeee--------eecCCCCCeeEEEEeccCcch--hhHHHh-hccc
Q 014227 226 KEIE---I-SA-------------SSLVSFRYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ--VRYFIG-LVVC 277 (428)
Q Consensus 226 ~~i~---i-~a-------------p~L~~L~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~--~~~~~~-l~~~ 277 (428)
.... + .+ ++|++|.+.+..+. -.+..+++|+.+++..+...+ +..+.. .+ .
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~ 213 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-A 213 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-G
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-h
Confidence 2100 0 11 78888888766432 123467788988887776553 222222 44 7
Q ss_pred cCCcceeEEeeeeeeee---cccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHh--CCCccEEEEEEecCCCCcccc
Q 014227 278 CFPQLKTLDLECCNEVF---MEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKA--CPFLQKLVIKIWNNNRTIGEK 350 (428)
Q Consensus 278 ~~~~l~~L~l~~~~~~~---~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~--~P~L~~L~i~~~~~~~~~~~~ 350 (428)
.+++|+.|.++.+.... ..++ ...+++|++|.|..+.........+...++. +|+|+.|++..+.... . ..
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~-g~ 291 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-D-AV 291 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH-H-HH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH-H-HH
Confidence 88899999998775431 2223 6677889998885443222222334555554 8899999887542110 0 00
Q ss_pred cccCCcCc---cCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227 351 RHQIPVHL---HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK 396 (428)
Q Consensus 351 ~~~~p~~~---~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 396 (428)
.. +|..+ +.+|+.+.+.+-.-. .+...+..+.+..+.++...+.
T Consensus 292 ~~-l~~~l~~~l~~L~~L~l~~N~l~-~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 292 RT-LKTVIDEKMPDLLFLELNGNRFS-EEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HH-HHHHHHHHCTTCCEEECTTSBSC-TTSHHHHHHHHHHHHHTCCEEC
T ss_pred HH-HHHHHHhcCCCceEEEccCCcCC-cchhHHHHHHHHhhhcCcchhh
Confidence 01 33322 478888888764333 2222333333444455444443
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.62 E-value=2.1e-08 Score=94.76 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=107.8
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceE--EEECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI--EISASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i--~i~ap~L~~ 237 (428)
+.++++|++|+|.++.+.+-.- +..++.|+.|.+.+|.....+..-..+++|+.|.+.+|.. ..+ .-..++|+.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCE
Confidence 3456777777777766543211 5667777777777775444333233456677777766652 111 113466777
Q ss_pred EEEcceeee-e-ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecC
Q 014227 238 FRYSGKDIK-L-HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEP 315 (428)
Q Consensus 238 L~~~~~~~~-~-~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 315 (428)
|++.+.... + .+..+++|+.+.+..+...+... + ..+++|+.|.++++...... +...+++|++|++..+..
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----~-~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP----V-ANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCch----h-hcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCcc
Confidence 776655331 1 14456666666665544332211 2 56667777777665332211 155566677776644322
Q ss_pred CCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-cCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEE
Q 014227 316 NCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-VHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMI 394 (428)
Q Consensus 316 ~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~ 394 (428)
.. . ..+..+|+|+.|++....-. . .+ -....+|+.+.+.+..-..... ..+.+.+.|+.+.
T Consensus 256 ~~--~----~~~~~l~~L~~L~l~~n~l~-------~-~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 256 SD--I----NAVKDLTKLKMLNVGSNQIS-------D-ISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLF 317 (347)
T ss_dssp CC--C----GGGTTCTTCCEEECCSSCCC-------C-CGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEE
T ss_pred CC--C----hhHhcCCCcCEEEccCCccC-------C-ChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEE
Confidence 21 1 12456677777776543210 0 11 1123556666665533222111 1233556666666
Q ss_pred EecC
Q 014227 395 IKPS 398 (428)
Q Consensus 395 i~~~ 398 (428)
+...
T Consensus 318 L~~n 321 (347)
T 4fmz_A 318 LSQN 321 (347)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 6543
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.61 E-value=2.7e-08 Score=92.24 Aligned_cols=210 Identities=16% Similarity=0.111 Sum_probs=128.5
Q ss_pred CCCCcccceEEeeeEEeehHH-HHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceE-----EEECC
Q 014227 160 LSGIKSLRSLCLNALKVSGEV-LEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI-----EISAS 233 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i-----~i~ap 233 (428)
+.++++|++|+|.+..+.... ....+.++++|+.|+|.++........-..+++|++|++.++. +..+ ....+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence 457899999999988754211 1112456899999999988643322222356889999988764 1111 11347
Q ss_pred CcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEE
Q 014227 234 SLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHL 308 (428)
Q Consensus 234 ~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L 308 (428)
+|+.|.+.+.... ..+..+++|+.+++..+...+. .....+ ..+++|+.|+++.+........ ...+++|++|
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-EECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-cchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 8999988876442 2356788999998866544320 000233 7788999999987754433222 6677899999
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc---CccCCccEEEEee--eeeCCchHHHHHHH
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV---HLHQHLKVVELHE--FRWLQIDPEIAFFI 383 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~---~~~~~L~~v~i~~--f~g~~~e~~~~~~l 383 (428)
++..+....... ..+..+++|+.|++....-. ...|. ....+|+.+.+.+ +.+......+.+++
T Consensus 205 ~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 205 NMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM-------TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp ECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCC-------BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred ECCCCccCccCh----hhccCcccCCEeECCCCCCc-------ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 885443222111 12467899999998754211 10121 1225899999886 55554444555554
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.54 E-value=6.6e-08 Score=91.26 Aligned_cols=210 Identities=14% Similarity=0.151 Sum_probs=121.5
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 237 (428)
+.++++|++|+|.++.+.+- . .+.++++|+.|.+.+|....... ...+++|+.|++.+|.....+. -..++|+.
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 34567777777777665432 1 25667777777777665322111 2245677777777765333221 13467777
Q ss_pred EEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecC
Q 014227 238 FRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEP 315 (428)
Q Consensus 238 L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 315 (428)
|.+.+.... ..+..+++|+++++..+...++.. + ..+++|+.|.++.+..... .+...+++|++|++..+..
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~-~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP----L-ASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG----G-GGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCccccccc----c-cCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCcc
Confidence 777665331 125567777777776655443221 2 6777788888766633221 1156677888888854422
Q ss_pred CCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-cCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEE
Q 014227 316 NCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-VHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMI 394 (428)
Q Consensus 316 ~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~ 394 (428)
.. ... +..+|+|+.|++...... . .+ -....+|+.+.+.+..-..- . .+.+.+.|+.+.
T Consensus 234 ~~--~~~----~~~l~~L~~L~l~~n~l~-------~-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~ 293 (347)
T 4fmz_A 234 TD--LSP----LANLSQLTWLEIGTNQIS-------D-INAVKDLTKLKMLNVGSNQISDI--S----VLNNLSQLNSLF 293 (347)
T ss_dssp CC--CGG----GTTCTTCCEEECCSSCCC-------C-CGGGTTCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEE
T ss_pred CC--Ccc----hhcCCCCCEEECCCCccC-------C-ChhHhcCCCcCEEEccCCccCCC--h----hhcCCCCCCEEE
Confidence 22 211 678888888888654211 1 11 12346888888876432221 1 256889999999
Q ss_pred EecCc
Q 014227 395 IKPSS 399 (428)
Q Consensus 395 i~~~~ 399 (428)
+....
T Consensus 294 L~~n~ 298 (347)
T 4fmz_A 294 LNNNQ 298 (347)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 87653
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.53 E-value=1.3e-08 Score=99.97 Aligned_cols=262 Identities=14% Similarity=0.097 Sum_probs=143.0
Q ss_pred HHH-HHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCC----cccc
Q 014227 119 WIY-TATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCP----HLEH 193 (428)
Q Consensus 119 wl~-~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~ 193 (428)
|.. ....+++++|++..+.........++.. +..+++|++|+|++..+.+..+..+...++ .|++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~----------l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 89 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSA----------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH----------HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHH----------HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence 444 3344689999887654321111122222 335789999999998888777777777666 6999
Q ss_pred eeecccCCce----e-eEEecCCCCcceEEeeecCCcceEEE---------ECCCcceEEEcceeeee--------ecCC
Q 014227 194 LYVANSSELL----S-LKVVGSSIPLKYLDIHYCYSMKEIEI---------SASSLVSFRYSGKDIKL--------HVGN 251 (428)
Q Consensus 194 L~L~~~~~~~----~-l~i~~~~~~L~~L~l~~c~~l~~i~i---------~ap~L~~L~~~~~~~~~--------~~~~ 251 (428)
|+|.+|.... . ...-..+++|++|+++++. +....+ ..++|++|++.+..+.- .+..
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence 9998886321 0 1111245788888888876 221100 12468888877664321 2334
Q ss_pred CCCeeEEEEeccCcch--hhHHH-hhccccCCcceeEEeeeeeeeecc---cC--CCCCCCccEEEEEeecCCCCchhHH
Q 014227 252 VPQLVDVVIHGAPLFQ--VRYFI-GLVVCCFPQLKTLDLECCNEVFME---FG--HWELPKLLHLKLTITEPNCESLLGL 323 (428)
Q Consensus 252 ~p~L~~l~l~~~~~~~--~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~L~~L~l~~~~~~~~~~~~l 323 (428)
+++|+++++..+...+ ...+. .+. ...++|+.|.++.+...... ++ ...+++|++|++..+. ....++
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~ 244 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK---LGDVGM 244 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHH-HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB---CHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHh-cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc---CChHHH
Confidence 6778888887665443 11222 122 34568888888766443321 12 3456778888774432 222222
Q ss_pred HHHH----HhCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEeeeeeCC-chHHHHHHHHhcccccccEEEe
Q 014227 324 SFVL----KACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHEFRWLQ-IDPEIAFFIFRNAKVLEKMIIK 396 (428)
Q Consensus 324 ~~lL----~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~f~g~~-~e~~~~~~ll~~a~~L~~l~i~ 396 (428)
..+. ..+++|+.|++..+.-. ...... ++.. ...+|+.+.+.+-.-.. ....+.+.+..+.+.|+.+.+.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~--~~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGIT--AKGCGD-LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCC--HHHHHH-HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHhcCCCCceEEECcCCCCC--HHHHHH-HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2222 25778888887643210 000000 1111 14678877776532211 1123444444455788888877
Q ss_pred cC
Q 014227 397 PS 398 (428)
Q Consensus 397 ~~ 398 (428)
..
T Consensus 322 ~n 323 (461)
T 1z7x_W 322 SC 323 (461)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.53 E-value=2.1e-07 Score=91.72 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=17.7
Q ss_pred cCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEecC
Q 014227 359 HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPS 398 (428)
Q Consensus 359 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~ 398 (428)
..+|+.+.+.+-.-.... . +.+.+.|+.+.+...
T Consensus 308 l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred CCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence 456666666653222111 1 356677777776543
No 16
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.51 E-value=1.9e-08 Score=94.50 Aligned_cols=177 Identities=20% Similarity=0.170 Sum_probs=111.0
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee-eEEecCCCCcceEEeeecCCcce-----EEEECC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS-LKVVGSSIPLKYLDIHYCYSMKE-----IEISAS 233 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~-----i~i~ap 233 (428)
...+++|++|+|.++.+.+..+..++.+||+|++|+|.+|..... ...-..+++|++|++.+|..+.. +.-..|
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 345788888888888887776777788888888888888753211 11112457888888888853332 122457
Q ss_pred CcceEEEcce-eee-----eecCCCC-CeeEEEEeccC--cchhhHHHhhccccCCcceeEEeeeee-eeecccC-CCCC
Q 014227 234 SLVSFRYSGK-DIK-----LHVGNVP-QLVDVVIHGAP--LFQVRYFIGLVVCCFPQLKTLDLECCN-EVFMEFG-HWEL 302 (428)
Q Consensus 234 ~L~~L~~~~~-~~~-----~~~~~~p-~L~~l~l~~~~--~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~~~-~~~~ 302 (428)
+|++|++.++ .+. ..+..+| +|+.+++..+. ..+ ..+...+ ..+++|+.|+++++. ......+ ...+
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-SDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-HHHHHHH-HHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-HHHHHHH-hhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 8888888766 332 2345677 88888887663 221 1111333 678888888887775 2222222 5666
Q ss_pred CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
++|++|+|..+. .....++ ..+..+|+|+.|++.++
T Consensus 247 ~~L~~L~l~~~~--~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCY--DIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCT--TCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCC--CCCHHHH-HHHhcCCCCCEEeccCc
Confidence 888888884432 2222222 23467888888888754
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.46 E-value=9.4e-08 Score=87.63 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=92.4
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecCCcceEE----EECC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCYSMKEIE----ISAS 233 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~----i~ap 233 (428)
+..+++|++|+|.+..+.+-. ...+.++++|+.|.+.++..++.+. .-..+++|+.|++.++. +..+. -..+
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA 129 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence 456778888888776543211 1125667788888887775333321 11234677777777765 22221 1236
Q ss_pred CcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEE
Q 014227 234 SLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHL 308 (428)
Q Consensus 234 ~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L 308 (428)
+|+.|.+.+..+. + .+.++++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH--HHh-cCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 6777776655331 1 24456677777765544332110 112 5566777777766543322111 4556677777
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
++..+.... . ....+..+|+|+.|++...
T Consensus 207 ~l~~n~l~~--~--~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 207 YLFANNLSA--L--PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECCSSCCSC--C--CHHHHTTCTTCCEEECCSS
T ss_pred eCCCCcCCc--C--CHHHcccCcccCEEeccCC
Confidence 664432221 1 1234566777777776543
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.45 E-value=1.9e-07 Score=92.05 Aligned_cols=216 Identities=15% Similarity=0.098 Sum_probs=111.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 237 (428)
+.++++|++|++.++.+.+-.- +.++++|+.|.+.+|..... .--..+++|++|++.+|. +..+. -..++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 4567888888888877654321 77888888888887753222 112346788888888775 22111 12356666
Q ss_pred EEEcceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCC
Q 014227 238 FRYSGKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPN 316 (428)
Q Consensus 238 L~~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 316 (428)
|.+.+... ...+.++++|+.+++..+....+. .+ ..+++|+.|.++.+..... .+...+++|++|++..+...
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VL-AKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GG-GGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh----hh-ccCCCCCEEEecCCccccc-ccccccCCCCEEECCCCCcc
Confidence 66643211 123556777777777655443321 12 5666666666655532211 11344555666655332211
Q ss_pred CCchhHHHHHHHhCCCccEEEEEEecCCCC---------------cccccccCCcCccCCccEEEEeeeeeCCchHHHHH
Q 014227 317 CESLLGLSFVLKACPFLQKLVIKIWNNNRT---------------IGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAF 381 (428)
Q Consensus 317 ~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~---------------~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~ 381 (428)
. . ..+..+|+|+.|++........ ........+-....+|+.+.+.+..-..-. .
T Consensus 235 ~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-~--- 304 (466)
T 1o6v_A 235 D--I----GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-P--- 304 (466)
T ss_dssp C--C----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-G---
T ss_pred c--c----hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch-h---
Confidence 1 1 1234555555555543321000 000001011123467777777653322211 1
Q ss_pred HHHhcccccccEEEecC
Q 014227 382 FIFRNAKVLEKMIIKPS 398 (428)
Q Consensus 382 ~ll~~a~~L~~l~i~~~ 398 (428)
+.+.+.|+.+.+...
T Consensus 305 --~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFN 319 (466)
T ss_dssp --GGGCTTCSEEECCSS
T ss_pred --hcCCCCCCEEECcCC
Confidence 567788888877654
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.45 E-value=1e-07 Score=88.48 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=112.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 237 (428)
+..+++|+.|+|.++.+.+-.- +.++++|+.|.+.++.. ..+..-..+++|+.|++++|. +..+. -..++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 4468899999999887754321 78889999999988863 222222346788889888876 23221 12478888
Q ss_pred EEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecC
Q 014227 238 FRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEP 315 (428)
Q Consensus 238 L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 315 (428)
|.+.+.... ..+..+++|+.+++..+...++.. + ..+++|+.|.++.+..... .+...+++|++|++..+..
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----l-~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP----L-ANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G-TTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh----h-cCCCCCCEEECCCCccCcC-hhhcCCCCCCEEEccCCcc
Confidence 888776442 126678889999987765554322 2 7889999999987754321 1266788999998854432
Q ss_pred CCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 316 NCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 316 ~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
.. ... +..+|+|+.|++....
T Consensus 208 ~~--~~~----l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 SD--VSP----LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CB--CGG----GTTCTTCCEEEEEEEE
T ss_pred Cc--ccc----ccCCCCCCEEEccCCe
Confidence 22 221 6789999999998764
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.45 E-value=6.5e-07 Score=84.72 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=103.4
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SASSLVS 237 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 237 (428)
+++|++|+|.+..+.+-. ...+.++++|+.|.+.++...... ..-..+++|++|+++++. +..+.. ..++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 467888888877654311 112567888888888777432210 011245778888887775 333321 2478888
Q ss_pred EEEcceee---ee--ecCCCCCeeEEEEeccC-cchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEE
Q 014227 238 FRYSGKDI---KL--HVGNVPQLVDVVIHGAP-LFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKL 310 (428)
Q Consensus 238 L~~~~~~~---~~--~~~~~p~L~~l~l~~~~-~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 310 (428)
|++.+... +. .+.++++|+.+++..+. ...+.. ..+ ..+++|+.|+++.+........ ...+++|++|++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 88876633 11 35678889988887653 221110 122 6788999999987754433222 667788888888
Q ss_pred EeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 311 TITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
..+... .. ...++..+++|+.|++...
T Consensus 206 ~~n~l~--~~--~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 206 HMKQHI--LL--LEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp ECSCST--TH--HHHHHHHTTTEEEEEEESC
T ss_pred CCCccc--cc--hhhhhhhcccccEEECCCC
Confidence 654321 12 1345667899999999865
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.44 E-value=4.4e-07 Score=84.53 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=148.6
Q ss_pred chHHHHHHHHHh--CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcc
Q 014227 114 RDITNWIYTATA--KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHL 191 (428)
Q Consensus 114 ~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 191 (428)
..+...+..... +++++|++...... .++... +..+++|++|+|.+..+.+.. . +..+++|
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L 82 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLS-----QISAAD---------LAPFTKLELLNLSSNVLYETL-D--LESLSTL 82 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCC-----CCCHHH---------HTTCTTCCEEECTTSCCEEEE-E--ETTCTTC
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccC-----cCCHHH---------hhCCCcCCEEECCCCcCCcch-h--hhhcCCC
Confidence 345555555443 37888888554322 233222 346899999999988764321 1 7789999
Q ss_pred cceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceEEEcceee----eeecCCCCCeeEEEEeccCcc
Q 014227 192 EHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLF 266 (428)
Q Consensus 192 e~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~ 266 (428)
+.|.+.++.. ..+. ..++|+.|.+.++. +..+.. ..++|+.|.+.+..+ +..+..+++|+.+++..+...
T Consensus 83 ~~L~Ls~n~l-~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 83 RTLDLNNNYV-QELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CEEECCSSEE-EEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CEEECcCCcc-cccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 9999998852 3222 23799999999887 444433 358899999887644 234567889999999776554
Q ss_pred hhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCC
Q 014227 267 QVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRT 346 (428)
Q Consensus 267 ~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~ 346 (428)
.... ..+. ..+++|+.|+++.+..... .....+++|++|++..+.... . ..-+..+++|+.|++....
T Consensus 158 ~~~~-~~~~-~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~--l---~~~~~~l~~L~~L~L~~N~---- 225 (317)
T 3o53_A 158 TVNF-AELA-ASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF--M---GPEFQSAAGVTWISLRNNK---- 225 (317)
T ss_dssp EEEG-GGGG-GGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE--E---CGGGGGGTTCSEEECTTSC----
T ss_pred cccH-HHHh-hccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc--c---hhhhcccCcccEEECcCCc----
Confidence 3110 0223 5789999999987754332 123458899999995543222 1 1125688999999997542
Q ss_pred cccccccCCcC--ccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227 347 IGEKRHQIPVH--LHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK 396 (428)
Q Consensus 347 ~~~~~~~~p~~--~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 396 (428)
... +|+. ...+|+.+.+.+-.-. . ..+...+.+.+.|+.+.+.
T Consensus 226 ---l~~-l~~~~~~l~~L~~L~l~~N~~~--~-~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 226 ---LVL-IEKALRFSQNLEHFDLRGNGFH--C-GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ---CCE-ECTTCCCCTTCCEEECTTCCCB--H-HHHHHHHHTCHHHHHHHHH
T ss_pred ---ccc-hhhHhhcCCCCCEEEccCCCcc--C-cCHHHHHhccccceEEECC
Confidence 111 2322 2467888888753222 1 1233344556666655543
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.43 E-value=5.5e-08 Score=102.03 Aligned_cols=67 Identities=27% Similarity=0.184 Sum_probs=39.9
Q ss_pred CCCCCCCcccceEEeeeEEeehHHHH-HHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecC
Q 014227 157 GHGLSGIKSLRSLCLNALKVSGEVLE-FFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~ 223 (428)
|..+..+++|++|+|+++.+.+.... ..+.+|++|+.|+|.+|...+.+. +...+++|++|+++++.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 34566778888888888776542111 136778888888887764322111 11234667777776664
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.42 E-value=7.2e-07 Score=85.62 Aligned_cols=166 Identities=12% Similarity=0.128 Sum_probs=88.7
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR 239 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~ 239 (428)
+.++++|++|+|.+..+.+-. ...+.++++|+.|.+.++.... +.+ ..+++|+.|.+.++. +..+. ..++|+.|+
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~~-~~l~~L~~L~l~~n~-l~~~~-~~~~L~~L~ 211 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNL-LSTLA-IPIAVEELD 211 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSB-CCG-GGCTTCSEEECCSSC-CSEEE-CCSSCSEEE
T ss_pred hcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCc-ccc-ccccccceeeccccc-ccccC-CCCcceEEE
Confidence 467888999998887654321 1235678888888888775322 221 234677777777664 33332 234666666
Q ss_pred Ecceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC
Q 014227 240 YSGKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC 317 (428)
Q Consensus 240 ~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 317 (428)
+.+... .+.....++|+.+++..+...+. ..+ ..+++|+.|+++.+........ ...+++|++|.|..+....
T Consensus 212 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 212 ASHNSINVVRGPVNVELTILKLQHNNLTDT----AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp CCSSCCCEEECCCCSSCCEEECCSSCCCCC----GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred CCCCeeeeccccccccccEEECCCCCCccc----HHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 665533 22333445666666655444332 112 5566666666665533322111 4455666666663322111
Q ss_pred CchhHHHHHHHhCCCccEEEEEE
Q 014227 318 ESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 318 ~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
+......+|+|+.|++..
T Consensus 287 -----~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 287 -----LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp -----EECSSSCCTTCCEEECCS
T ss_pred -----cCcccCCCCCCCEEECCC
Confidence 111123456666666654
No 24
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.42 E-value=2e-08 Score=96.42 Aligned_cols=181 Identities=18% Similarity=0.142 Sum_probs=121.0
Q ss_pred CCCcccceEEeeeEEeehH---HHHHHHhcCCcccceeecccCCcee--eEEec---CC---------CCcceEEeeecC
Q 014227 161 SGIKSLRSLCLNALKVSGE---VLEFFIHSCPHLEHLYVANSSELLS--LKVVG---SS---------IPLKYLDIHYCY 223 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~--l~i~~---~~---------~~L~~L~l~~c~ 223 (428)
..+++|++|+|+++.+.+. .+...+..|++|+.|.|.+|..... ..+.. .+ ++|++|.+.+|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4689999999999998764 3556678999999999999864210 01111 12 689999999886
Q ss_pred Cc-ceEE------EECCCcceEEEcceeee------e---ecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeE
Q 014227 224 SM-KEIE------ISASSLVSFRYSGKDIK------L---HVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTL 285 (428)
Q Consensus 224 ~l-~~i~------i~ap~L~~L~~~~~~~~------~---~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L 285 (428)
-- ..+. -..++|+.|.+.+..+. + .+..+++|+.+++..+...+ ...+...+ ..+++|+.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-GGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-ccCCCcCEE
Confidence 21 1111 14579999998877443 1 45678999999998776643 12222444 788999999
Q ss_pred Eeeeeeeeecc---cC--C--CCCCCccEEEEEeecCCCCchhHHHHHH-HhCCCccEEEEEEec
Q 014227 286 DLECCNEVFME---FG--H--WELPKLLHLKLTITEPNCESLLGLSFVL-KACPFLQKLVIKIWN 342 (428)
Q Consensus 286 ~l~~~~~~~~~---~~--~--~~~~~L~~L~l~~~~~~~~~~~~l~~lL-~~~P~L~~L~i~~~~ 342 (428)
.++.+...... ++ . ..+++|++|+|..+.........+...+ .++|+|+.|++....
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99887544321 12 2 4488999999955432222222355555 568999999997653
No 25
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.41 E-value=3.3e-08 Score=97.09 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=90.7
Q ss_pred CcceEEEcceee--------eeecCCCCCeeEEEEeccCcch--hhHHH-hhccccCCcceeEEeeeeeeeeccc---C-
Q 014227 234 SLVSFRYSGKDI--------KLHVGNVPQLVDVVIHGAPLFQ--VRYFI-GLVVCCFPQLKTLDLECCNEVFMEF---G- 298 (428)
Q Consensus 234 ~L~~L~~~~~~~--------~~~~~~~p~L~~l~l~~~~~~~--~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~~---~- 298 (428)
+|++|++.+..+ +-.+..+++|+++++..+...+ ...+. .+. ...++|++|.++.+....... +
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh-cCCCcceEEECCCCCCCHHHHHHHHH
Confidence 455665554432 2245688999999998776554 22222 222 456789999998775443221 2
Q ss_pred -CCCCCCccEEEEEeecCCCCchhHHHHHHH-hCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEeeeeeCC
Q 014227 299 -HWELPKLLHLKLTITEPNCESLLGLSFVLK-ACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHEFRWLQ 374 (428)
Q Consensus 299 -~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~-~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~f~g~~ 374 (428)
...+++|++|++..+.........+...+. ..++|+.|++..+.-.. .+ ... ++.. ...+|+.+.+.+..-..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~-~~~-l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DN-CRD-LCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-TH-HHH-HHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-HH-HHH-HHHHHHhCCCccEEeccCCcCCh
Confidence 445689999999544322112222333232 46799999986542111 00 000 1211 24789998887643221
Q ss_pred -chHHHHHHHHhcccccccEEEecC
Q 014227 375 -IDPEIAFFIFRNAKVLEKMIIKPS 398 (428)
Q Consensus 375 -~e~~~~~~ll~~a~~L~~l~i~~~ 398 (428)
.-..+...+..+.+.|+.+.+...
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHHHhcCCCCceEEECcCC
Confidence 222334455557899999998765
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.39 E-value=9.7e-07 Score=89.04 Aligned_cols=206 Identities=17% Similarity=0.120 Sum_probs=113.3
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcceEE---EECCCc
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMKEIE---ISASSL 235 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~~i~---i~ap~L 235 (428)
.+++|+.|++.+..+....- ...+|+|+.|++.++.......+. ..+++|+.|++.+|. +..+. -..++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L 398 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 398 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred cccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence 46677777777665432110 156777777777776533221111 145777777777775 22221 235777
Q ss_pred ceEEEcceeee-----eecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccE
Q 014227 236 VSFRYSGKDIK-----LHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLH 307 (428)
Q Consensus 236 ~~L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~ 307 (428)
+.|.+.+.... ..+.++++|+.+++..+.... .. ..+ ..+++|+.|.++.+......+| ...+++|++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~-~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT---TTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch---hhh-hcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 77777765432 134567778887776554432 11 222 6678888888877654322333 666778888
Q ss_pred EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEee--eeeCCchHHHH-HH
Q 014227 308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHE--FRWLQIDPEIA-FF 382 (428)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~--f~g~~~e~~~~-~~ 382 (428)
|+|..+.... . ....+..+|+|+.|++....- ....|.. -..+|+.+.+.+ +.+.-....++ .+
T Consensus 475 L~l~~n~l~~--~--~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~w 543 (570)
T 2z63_A 475 LDLSQCQLEQ--L--SPTAFNSLSSLQVLNMASNQL-------KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543 (570)
T ss_dssp EECTTSCCCE--E--CTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred EECCCCcccc--C--ChhhhhcccCCCEEeCCCCcC-------CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHH
Confidence 8774332111 1 022345778888888865421 1101111 246778887776 44544445555 44
Q ss_pred HHhc
Q 014227 383 IFRN 386 (428)
Q Consensus 383 ll~~ 386 (428)
+-.+
T Consensus 544 l~~~ 547 (570)
T 2z63_A 544 LNKN 547 (570)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 4333
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.37 E-value=1.3e-07 Score=96.37 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE------EECC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE------ISAS 233 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~------i~ap 233 (428)
+..+++|++|++.++.+.. +.. + .+|.|+.|.+.++.....+.+. .+++|+.|+++++. +..+. ...+
T Consensus 303 l~~~~~L~~L~l~~n~l~~--lp~-~-~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQ--FPT-L-DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCTTCCCSEEEEESCCCSS--CCC-C-CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred ccccccCCEEEcccccCcc--ccc-C-CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence 4456677777777766521 222 2 6667777777666544433222 34566666666554 22221 1235
Q ss_pred CcceEEEcceee---eeecCCCCCeeEEEEec
Q 014227 234 SLVSFRYSGKDI---KLHVGNVPQLVDVVIHG 262 (428)
Q Consensus 234 ~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~ 262 (428)
+|+.|++.+... +..+.++++|+.+++..
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCC
Confidence 555555554422 11234455555555543
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.37 E-value=2.3e-07 Score=85.03 Aligned_cols=204 Identities=12% Similarity=0.073 Sum_probs=128.0
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecCCcceEEE----ECCCcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCYSMKEIEI----SASSLV 236 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~ 236 (428)
.++|++|+|.+..+.+-. ...+..+++|+.|.|.++.. ..+. .-..+++|+.|++.++..+..+.. ..++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCcc-ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 579999999988764421 12367899999999998853 2221 112468899999998864444421 247899
Q ss_pred eEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227 237 SFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT 311 (428)
Q Consensus 237 ~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 311 (428)
+|.+.+..+. ..+.++++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|++.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--hHh-ccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 9998876442 235678899999987665443111 223 6788999999987754432222 5667889999885
Q ss_pred eecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-c--CccCCccEEEEee--eeeCCchHHHHHHH
Q 014227 312 ITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-V--HLHQHLKVVELHE--FRWLQIDPEIAFFI 383 (428)
Q Consensus 312 ~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-~--~~~~~L~~v~i~~--f~g~~~e~~~~~~l 383 (428)
.+...... ...+..+++|+.|++....-. . .| + ....+|+.+.+.+ +.+......+.+++
T Consensus 186 ~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-------~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 186 QNRVAHVH----PHAFRDLGRLMTLYLFANNLS-------A-LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp SSCCCEEC----TTTTTTCTTCCEEECCSSCCS-------C-CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CCcccccC----HhHccCcccccEeeCCCCcCC-------c-CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 54322211 233567889999988754211 1 12 1 1246788888876 44444444455544
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.37 E-value=2.6e-07 Score=85.77 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=126.7
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEE
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFR 239 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~ 239 (428)
.+++|+.|++.++.+.+- . -+..+++|+.|.+.+|....... -..+++|+.|++.++. +..+. -..++|+.|.
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence 478999999998876542 1 26789999999999986433222 3456899999999886 33332 1247899999
Q ss_pred Ecceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC
Q 014227 240 YSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC 317 (428)
Q Consensus 240 ~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 317 (428)
+.+.... -.+..+++|+.+++..+....+.. + ..+++|+.|.++.+..... .+...+++|++|++..+....
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----l-~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP----L-AGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc----c-cCCCCccEEEccCCcCCCC-hhhcCCCCCCEEECCCCccCc
Confidence 8877542 136788999999998776554322 3 7889999999988754331 126778899999995543322
Q ss_pred CchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeee
Q 014227 318 ESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFR 371 (428)
Q Consensus 318 ~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~ 371 (428)
... +..+|+|+.|++....-. ...+-....+|+.+.+.+-.
T Consensus 188 --~~~----l~~l~~L~~L~L~~N~l~-------~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 --ISP----LASLPNLIEVHLKNNQIS-------DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp --CGG----GGGCTTCCEEECTTSCCC-------BCGGGTTCTTCCEEEEEEEE
T ss_pred --Chh----hcCCCCCCEEEccCCccC-------ccccccCCCCCCEEEccCCe
Confidence 221 688999999999754211 10111235678888887633
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.35 E-value=1e-07 Score=93.58 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=5.6
Q ss_pred CCcccceEEeeeE
Q 014227 162 GIKSLRSLCLNAL 174 (428)
Q Consensus 162 ~~~~L~~L~L~~~ 174 (428)
++++|+.|+|.+.
T Consensus 97 ~l~~L~~L~Ls~n 109 (452)
T 3zyi_A 97 HLHHLEVLQLGRN 109 (452)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3444444444443
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.35 E-value=1.1e-07 Score=92.91 Aligned_cols=11 Identities=9% Similarity=0.310 Sum_probs=4.5
Q ss_pred hCCCccEEEEE
Q 014227 329 ACPFLQKLVIK 339 (428)
Q Consensus 329 ~~P~L~~L~i~ 339 (428)
.+++|+.|+++
T Consensus 277 ~l~~L~~L~L~ 287 (440)
T 3zyj_A 277 PLHHLERIHLH 287 (440)
T ss_dssp SCTTCCEEECC
T ss_pred cccCCCEEEcC
Confidence 33444444443
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.34 E-value=9.4e-07 Score=89.86 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=88.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCC---------------
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYS--------------- 224 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~--------------- 224 (428)
+.++++|++|+|.++.+.+-. ...+.++++|+.|.|.++.... +.+ ..+++|+.|.+.++..
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSB-CCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred hccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCC-cCh-hhhhhhhhhhcccCccccccCCchhheeecc
Confidence 356778888888777654311 1125667777777777764221 111 1234455554444320
Q ss_pred ---cceEEE-ECCCcceEEEcceee--eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC
Q 014227 225 ---MKEIEI-SASSLVSFRYSGKDI--KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG 298 (428)
Q Consensus 225 ---l~~i~i-~ap~L~~L~~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~ 298 (428)
+..+.. ..++|+.|.+.+..+ ...+..+++|+.+++..+....... ..+ ..+++|+.|.++++........
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY--HPF-VKMQRLERLYISNNRLVALNLY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES--GGG-TTCSSCCEEECTTSCCCEEECS
T ss_pred CCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH--HHh-cCccCCCEEECCCCCCCCCCcc
Confidence 122211 124556665554432 1234566677777776554432100 112 5677777777766644332222
Q ss_pred CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
...+++|+.|+|..+.... +..-+..+|+|+.|++...
T Consensus 297 ~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSS
T ss_pred cccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCC
Confidence 4556778888775443221 1222356677777777653
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.33 E-value=3.2e-07 Score=89.62 Aligned_cols=206 Identities=14% Similarity=0.074 Sum_probs=127.4
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEE----ECC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEI----SAS 233 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i----~ap 233 (428)
.+.++++|++|+|.+..+.+-.. ..+.++++|+.|+|.++....... .-..+++|+.|+++++. +..+.- ..+
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIP 160 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCc
Confidence 45678999999999886543211 236788999999998875322110 11245789999998876 444322 247
Q ss_pred CcceEEEcce-ee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 234 SLVSFRYSGK-DI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 234 ~L~~L~~~~~-~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
+|+.|++.+. .. ...+.++++|+.+++..+....+.. + ..+++|+.|+++.+........ +..+++|++
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN----L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC----C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc----c-CCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 8888888763 11 1235678889999887665543221 2 6788999999987754433222 677888999
Q ss_pred EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEee--eeeCCchHHHHHH
Q 014227 308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHE--FRWLQIDPEIAFF 382 (428)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~--f~g~~~e~~~~~~ 382 (428)
|.|..+...... ...+..+++|+.|++.... ... .|.. ...+|+.+.+.+ +.+...-..+..+
T Consensus 236 L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~-------l~~-~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 236 LWMIQSQIQVIE----RNAFDNLQSLVEINLAHNN-------LTL-LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp EECTTCCCCEEC----TTSSTTCTTCCEEECTTSC-------CCC-CCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred EECCCCceeEEC----hhhhcCCCCCCEEECCCCC-------CCc-cChhHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 988443222211 2335678999999986532 111 2221 247888888886 4444333344444
Q ss_pred H
Q 014227 383 I 383 (428)
Q Consensus 383 l 383 (428)
+
T Consensus 304 ~ 304 (440)
T 3zyj_A 304 I 304 (440)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.32 E-value=1.1e-06 Score=84.26 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE-ECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~ 237 (428)
+.++++|++|+|.+..+..- ...++.++++|+.|.+.++...... ..-..+++|+.|++.++. +..+.+ ..|+|+.
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~ 190 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFH 190 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSE
T ss_pred hcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccccccccccce
Confidence 34555555555555544311 0112345555555555555321110 001123455555555544 222211 1245555
Q ss_pred EEEcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227 238 FRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT 311 (428)
Q Consensus 238 L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 311 (428)
+.+.+.... .+...++|+++++....... +.....++|+.|.++.+..... .....+++|++|++.
T Consensus 191 L~l~~n~l~-~~~~~~~L~~L~l~~n~l~~------~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 191 ANVSYNLLS-TLAIPIAVEELDASHNSINV------VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLS 256 (390)
T ss_dssp EECCSSCCS-EEECCSSCSEEECCSSCCCE------EECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred eeccccccc-ccCCCCcceEEECCCCeeee------ccccccccccEEECCCCCCccc-HHHcCCCCccEEECC
Confidence 555444221 11223345555554433221 1102234555555554432211 113445555555553
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.32 E-value=5.1e-07 Score=89.13 Aligned_cols=217 Identities=16% Similarity=0.044 Sum_probs=121.1
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE----EECC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE----ISAS 233 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~----i~ap 233 (428)
.+.++++|++|+|.+..+.+-. ...+.++++|+.|.|.++...... .+-..+++|+.|++.++. +..+. -..+
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCT
T ss_pred HccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccc
Confidence 4567888888888877654311 112667888888888776532110 111245778888887775 23221 1246
Q ss_pred CcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc-CCCCCCCccEE
Q 014227 234 SLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF-GHWELPKLLHL 308 (428)
Q Consensus 234 ~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~L~~L 308 (428)
+|+.|.+.+.... ..+.++++|+++++..+....+.. ..+ ..+++|+.|.++.+....... ....+++|++|
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l-~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--EAL-SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--HHH-TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh--hHh-cccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 7888887765331 245677888888887665443211 112 677888888887764433222 15667788888
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc---CccCCccEEEEeeee--eCCchHHHHHHH
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV---HLHQHLKVVELHEFR--WLQIDPEIAFFI 383 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~---~~~~~L~~v~i~~f~--g~~~e~~~~~~l 383 (428)
++..+.... .. ..-.-..++|+.|++....- .. .|. .-..+|+.+.+.+-. +... ..
T Consensus 206 ~l~~~~~~~-~~---~~~~~~~~~L~~L~l~~n~l-------~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~ 267 (477)
T 2id5_A 206 EISHWPYLD-TM---TPNCLYGLNLTSLSITHCNL-------TA-VPYLAVRHLVYLRFLNLSYNPISTIEG------SM 267 (477)
T ss_dssp EEECCTTCC-EE---CTTTTTTCCCSEEEEESSCC-------CS-CCHHHHTTCTTCCEEECCSSCCCEECT------TS
T ss_pred eCCCCcccc-cc---CcccccCccccEEECcCCcc-------cc-cCHHHhcCccccCeeECCCCcCCccCh------hh
Confidence 885432111 00 01111334788888875421 11 221 124677777776422 1111 12
Q ss_pred HhcccccccEEEecC
Q 014227 384 FRNAKVLEKMIIKPS 398 (428)
Q Consensus 384 l~~a~~L~~l~i~~~ 398 (428)
+.+.+.|+.+.+...
T Consensus 268 ~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 268 LHELLRLQEIQLVGG 282 (477)
T ss_dssp CTTCTTCCEEECCSS
T ss_pred ccccccCCEEECCCC
Confidence 356778888877643
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.31 E-value=1.6e-06 Score=86.99 Aligned_cols=223 Identities=15% Similarity=0.074 Sum_probs=120.6
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE----EECCCcce
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE----ISASSLVS 237 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~ 237 (428)
+++|++|+|.+..+.+-. ...+.++++|++|.+.++...+.. ..-..+++|+.|+++++. +..+. -..++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 367777777777643211 112567777888887777532211 011245677777777765 22221 12467788
Q ss_pred EEEcceeee-----eecCCCCCeeEEEEeccCc-chhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEE
Q 014227 238 FRYSGKDIK-----LHVGNVPQLVDVVIHGAPL-FQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKL 310 (428)
Q Consensus 238 L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~-~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 310 (428)
|++.+.... -.+.++++|+.+++..+.. ..+.. ..+ ..+++|+.|+++.+........ ...+++|++|.+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhh-hcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 877765331 2466788888888876542 21110 122 6788999999987754432222 666788888888
Q ss_pred EeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHHHHHhccccc
Q 014227 311 TITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVL 390 (428)
Q Consensus 311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L 390 (428)
..+.... . ...++..+++|+.|++............ . .......+|+.+.+.+-.-......-+...+.+.+.|
T Consensus 180 ~~n~~~~--~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 180 HLSESAF--L--LEIFADILSSVRYLELRDTNLARFQFSP-L-PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp ECSBSTT--H--HHHHHHSTTTBSEEEEESCBCTTCCCCC-C-SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ccCcccc--c--chhhHhhcccccEEEccCCccccccccc-c-chhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 6543221 1 1334567899999999864311100000 0 0011245667766665433222222222233444555
Q ss_pred ccEEEe
Q 014227 391 EKMIIK 396 (428)
Q Consensus 391 ~~l~i~ 396 (428)
+.+.+.
T Consensus 254 ~~l~l~ 259 (549)
T 2z81_A 254 SEVEFD 259 (549)
T ss_dssp CEEEEE
T ss_pred cccccc
Confidence 555443
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.31 E-value=2.7e-07 Score=90.53 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=36.0
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE----ECC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI----SAS 233 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap 233 (428)
+.++++|++|+|.+..+..-. ...+.++++|+.|.|.++.... +.- -..+++|+.|++.+|..++.+.. ..+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred ccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 445556666666555433210 1123445556666665554211 100 01235555555555544443322 124
Q ss_pred CcceEEEcce
Q 014227 234 SLVSFRYSGK 243 (428)
Q Consensus 234 ~L~~L~~~~~ 243 (428)
+|+.|++.+.
T Consensus 197 ~L~~L~L~~n 206 (452)
T 3zyi_A 197 NLKYLNLGMC 206 (452)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 4555554443
No 38
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.30 E-value=6.7e-07 Score=83.32 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=141.4
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS 241 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 241 (428)
.+++|++|+|.+..+.+-. ...+.++++|+.|.|.++...+...+ ..+++|+.|+++++. +..+. ..++|+.|.+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence 4789999999999876532 23478999999999999875544443 456899999999886 55554 45899999998
Q ss_pred ceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCC
Q 014227 242 GKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCE 318 (428)
Q Consensus 242 ~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~ 318 (428)
+..+ .+....+++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|++..+....
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~- 183 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRD--LDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSGGG--BCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCccc--hhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-
Confidence 8755 4555678999999998776554211 122 6789999999988755443322 3467899999995443222
Q ss_pred chhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc--CccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227 319 SLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV--HLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK 396 (428)
Q Consensus 319 ~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~--~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 396 (428)
... ...+++|+.|+++...- .. .|+ ....+|+.+.+.+-.-.. +-..+.+.+.|+.+.+.
T Consensus 184 -~~~----~~~l~~L~~L~Ls~N~l-------~~-l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 184 -VKG----QVVFAKLKTLDLSSNKL-------AF-MGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLR 245 (317)
T ss_dssp -EEC----CCCCTTCCEEECCSSCC-------CE-ECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECT
T ss_pred -ccc----ccccccCCEEECCCCcC-------Cc-chhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEcc
Confidence 111 12489999999975421 11 121 124678888876522110 00113577899999887
Q ss_pred cCc
Q 014227 397 PSS 399 (428)
Q Consensus 397 ~~~ 399 (428)
..+
T Consensus 246 ~N~ 248 (317)
T 3o53_A 246 GNG 248 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 553
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.29 E-value=1e-06 Score=86.34 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=35.9
Q ss_pred CCCCCcccceEEeeeEEeehHHHH-HHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLE-FFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~ 223 (428)
.+.++++|++|+|.++.+.+..+. ..+.++++|+.|.|.++....... +-..+++|+.|++.++.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 455667777777777766543222 235566777777776665322111 11234666666666553
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.28 E-value=5e-07 Score=89.45 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=124.1
Q ss_pred CCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE
Q 014227 127 KVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK 206 (428)
Q Consensus 127 ~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~ 206 (428)
+++.|++...... .++.. .+..+++|++|+|+++.+.+.. . +.++++|+.|+|.+|. ++.+.
T Consensus 35 ~L~~L~Ls~n~l~-----~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 35 NVKELDLSGNPLS-----QISAA---------DLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp GCCEEECCSSCCC-----CCCGG---------GGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE
T ss_pred CccEEEeeCCcCC-----CCCHH---------HHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC
Confidence 7888888654432 22222 2457899999999988765321 1 7889999999999885 33222
Q ss_pred EecCCCCcceEEeeecCCcceEE-EECCCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCc
Q 014227 207 VVGSSIPLKYLDIHYCYSMKEIE-ISASSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQ 281 (428)
Q Consensus 207 i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~ 281 (428)
..++|+.|++++|. +..+. -..|+|+.|.+.+..+ +..+..+++|+.+++..+....... ..+. ..+++
T Consensus 97 ---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~-~~l~~ 170 (487)
T 3oja_A 97 ---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELA-ASSDT 170 (487)
T ss_dssp ---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGG-GGTTT
T ss_pred ---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHh-hhCCc
Confidence 22799999999887 34333 3358899999887643 2356678999999997766543110 0222 57899
Q ss_pred ceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 282 LKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 282 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
|+.|+++.+..... .+...+++|+.|+|+.+.... . ..-+..+|+|+.|++...
T Consensus 171 L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~--~---~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 171 LEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF--M---GPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE--E---CGGGGGGTTCSEEECTTS
T ss_pred ccEEecCCCccccc-cccccCCCCCEEECCCCCCCC--C---CHhHcCCCCccEEEecCC
Confidence 99999988754332 224458899999996543222 1 112568899999999754
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.27 E-value=7.3e-07 Score=87.52 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=74.9
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceEE
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFR 239 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~ 239 (428)
..+++|++|+|.+..+.+-. +.++++|+.|.+.++... .+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|.
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~-~l~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~ 154 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLT-KLDV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTELD 154 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCS-CCCC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEEE
T ss_pred ccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCC-eecC-CCCCcCCEEECCCCc-cceeccccCCcCCEEE
Confidence 34555555555555443321 444555555555554321 1221 233455555555543 222221 134555555
Q ss_pred Ecce-ee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC
Q 014227 240 YSGK-DI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC 317 (428)
Q Consensus 240 ~~~~-~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 317 (428)
+.+. .. .+.+..+++|+.+++..+....+. + ..+++|+.|.++.+..... +...+++|+.|++..+....
T Consensus 155 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-----l-~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITELD-----V-SQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-----C-TTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCCcccccccccCCcCCEEECCCCccceec-----c-ccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc
Confidence 5444 11 223445555666555544333211 1 5566666666655533221 35556667777664432221
Q ss_pred CchhHHHHHHHhCCCccEEEEEEe
Q 014227 318 ESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 318 ~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
. . +..+|+|+.|++...
T Consensus 227 --i---p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 227 --I---D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp --C---C--CTTCTTCSEEECCSS
T ss_pred --c---C--ccccCCCCEEEeeCC
Confidence 1 1 456677777777543
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.26 E-value=1.1e-06 Score=86.99 Aligned_cols=164 Identities=18% Similarity=0.155 Sum_probs=96.7
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceE---E-EECCCc
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI---E-ISASSL 235 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i---~-i~ap~L 235 (428)
+..+++|++|+|+++.+.+ +..+|.|+.|.+.+|..... . ...+++|+.|.+.++.- ..+ . -..++|
T Consensus 76 l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~~-~-~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L 146 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRV-S-CSRGQGKKNIYLANNKI-TMLRDLDEGCRSRV 146 (487)
T ss_dssp CTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCCE-E-ECCCSSCEEEECCSSCC-CSGGGBCGGGGSSE
T ss_pred cccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCCC-C-ccccCCCCEEECCCCCC-CCCCchhhcCCCCC
Confidence 3467888888888877654 33447888888887764332 1 12347788888877752 211 1 124677
Q ss_pred ceEEEcceeee-e---ec-CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEE
Q 014227 236 VSFRYSGKDIK-L---HV-GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKL 310 (428)
Q Consensus 236 ~~L~~~~~~~~-~---~~-~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l 310 (428)
+.|++++..+. . .+ ..+++|+.+++..+...... -. ..+++|+.|+++.+...........+++|+.|+|
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK----GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc----cc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEe
Confidence 78877765431 1 22 25678888888666544321 11 3477888888877654332112556677888877
Q ss_pred EeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 311 TITEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
..+... ++...+..+|+|+.|++...+
T Consensus 222 s~N~l~-----~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 222 RNNKLV-----LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTSCCC-----EECTTCCCCTTCCEEECTTCC
T ss_pred cCCcCc-----ccchhhccCCCCCEEEcCCCC
Confidence 443221 122234567788888876543
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.26 E-value=7.2e-07 Score=88.01 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=95.0
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEE---ECCC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEI---SASS 234 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i---~ap~ 234 (428)
.+.++++|++|+|.++.+.+-. ...+.++++|+.|.|.++....... .-..+++|+.|++.+|.....+.. ..++
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 3455666777776666554321 1235667777777776654322110 011346777777777664444321 1246
Q ss_pred cceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEE
Q 014227 235 LVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLK 309 (428)
Q Consensus 235 L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~ 309 (428)
|+.|++.+..+. + .+.++++|+.+++..+....+.. ..+ ..+++|+.|.++.+........ +..+++|++|+
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG--SML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT--TSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh--hhc-cccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 777777665331 1 24567777777776554432110 122 5677777777766644332211 55667777777
Q ss_pred EEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 310 LTITEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
|..+...... ...+..+++|+.|++...+
T Consensus 303 L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGNQLTTLE----ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSSCCSCCC----GGGBSCGGGCCEEECCSSC
T ss_pred CCCCcCceeC----HhHcCCCcccCEEEccCCC
Confidence 7544222211 1234567777777776543
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.25 E-value=2.6e-06 Score=85.55 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=120.3
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCce--eeEEecCCCCcceEEeeecCCcceEEE----EC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYSMKEIEI----SA 232 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i----~a 232 (428)
.+.++++|++|+|++..+.+-. ...+.++++|+.|.+.++.... ....-..+++|+.|++.++.....+.. ..
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 4667899999999998875432 2346889999999999886432 112223568999999999875554431 24
Q ss_pred CCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc---C-CCCCCC
Q 014227 233 SSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF---G-HWELPK 304 (428)
Q Consensus 233 p~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~---~-~~~~~~ 304 (428)
++|+.|++.+... +..+..+++|+++++.......+.. .+. ..+++|+.|+++.+....... + ...+++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE--IFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH--HHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccch--hhH-hhcccccEEEccCCccccccccccchhhhhhc
Confidence 7888888876643 2346678899999997665443222 122 678999999998875443221 1 345788
Q ss_pred ccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 305 LLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
|++|.+..+.........+...+..+++|+.|.+..+
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 9999996553332333345555677888888888754
No 45
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.9e-07 Score=88.42 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=42.4
Q ss_pred CCCcccceEEeeeEEee--------hHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227 161 SGIKSLRSLCLNALKVS--------GEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
..|++|+.|.|.++... ..++..++..+|+|++|.|.++.+.....+. +++|++|.+..|.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG 204 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC
Confidence 35789999998765432 1247788999999999999887443322222 3778888887665
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.22 E-value=2.3e-06 Score=87.01 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=105.0
Q ss_pred CCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEE-ECCCc
Q 014227 158 HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEI-SASSL 235 (428)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L 235 (428)
..+.++++|++|+|.++.+..- ...++.++++|+.|.|.++...+... .-..+++|+.|+++++. +..+.+ ..|+|
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L 194 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSL 194 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTC
T ss_pred HHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhh
Confidence 3457899999999999976531 12236789999999999986433211 11246899999998876 222221 12445
Q ss_pred ceEEEc-------------------ceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec
Q 014227 236 VSFRYS-------------------GKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM 295 (428)
Q Consensus 236 ~~L~~~-------------------~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~ 295 (428)
+.|.+. +..+ .+.....++|+.+++..+...+. ..+ ..+++|+.|+++++.....
T Consensus 195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~----~~l-~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT----AWL-LNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC----GGG-GGCTTCSEEECCSSCCCEE
T ss_pred hhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC----hhh-ccCCCCCEEECCCCccCCC
Confidence 544443 3322 12222335666666665544332 223 7788999999987754433
Q ss_pred ccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 296 EFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 296 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
... +..+++|+.|.|..+.... +......+|+|+.|++...
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-----EECSSSCCTTCCEEECCSS
T ss_pred CHHHhcCccCCCEEECCCCCCCC-----CCcccccCCCCcEEECCCC
Confidence 222 6677889999884432221 1223356899999999765
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.22 E-value=6.7e-07 Score=77.14 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=28.0
Q ss_pred ccCCcceeEEeeeee-eeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 277 CCFPQLKTLDLECCN-EVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
..+++|+.|.++.+. .... -+...+++|++|++..+.... . . .+..+|+|+.|++..
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~--~---~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--Y---R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC--C---T-TGGGCSSCCEEEECB
T ss_pred hhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC--h---H-HhccCCCCCEEEeeC
Confidence 455666666665553 2111 124455666666663322111 1 1 345666777666654
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.20 E-value=8.5e-08 Score=97.69 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE--
Q 014227 155 KRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI-- 230 (428)
Q Consensus 155 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i-- 230 (428)
.+|..+..+++|++|+|.++.+.+.. ...+.++|.|+.|.+.++.....+.. -..+++|+.|++.++. +..+..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence 35666778889999999888765421 12366788888888887754322211 1234677777777665 233221
Q ss_pred ----ECCCcceEEEcceeee----eecCCCCCeeEEEEecc
Q 014227 231 ----SASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGA 263 (428)
Q Consensus 231 ----~ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~ 263 (428)
..++|+.|.+.+.... ..+..+++|+.+++..+
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 2356666666554321 12345566666665443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.17 E-value=1.5e-06 Score=80.34 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=136.3
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcceEE---EECCCcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMKEIE---ISASSLV 236 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~~i~---i~ap~L~ 236 (428)
.++|++|+|.+..+.+- -..++.++++|+.|.|.++.....-.+. ..+++|+.|+++++. +..+. ...++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence 47999999999876531 1124678999999999988643211111 146899999999886 33332 2468999
Q ss_pred eEEEcceeee-e----ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEE
Q 014227 237 SFRYSGKDIK-L----HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLK 309 (428)
Q Consensus 237 ~L~~~~~~~~-~----~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~ 309 (428)
.|.+.+.... + .+..+++|+.+++..+...... ...+ ..+++|+.|.++.+.......+ ...+++|++|+
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS--TTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccc--hhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 9999877542 1 3667899999999766544210 0223 7889999999988755442334 67789999999
Q ss_pred EEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHHHHHhcc-c
Q 014227 310 LTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNA-K 388 (428)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a-~ 388 (428)
+..+...... ...+..+|+|+.|++.......... .+-....+|+.+.+.+-.-...... .+.+. +
T Consensus 182 Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~ 248 (306)
T 2z66_A 182 LSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDT-----FPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPS 248 (306)
T ss_dssp CTTSCCCEEC----TTTTTTCTTCCEEECTTSCCSBCCS-----GGGTTCTTCCEEECTTSCCCBCSSS----SCCCCCT
T ss_pred CCCCCcCCcC----HHHhcCCCCCCEEECCCCccCccCh-----hhccCcccCCEeECCCCCCcccCHH----HHHhhhc
Confidence 9544222111 2345788999999996542110000 0111246888888875321110000 12244 4
Q ss_pred ccccEEEecC
Q 014227 389 VLEKMIIKPS 398 (428)
Q Consensus 389 ~L~~l~i~~~ 398 (428)
.|+.+.+...
T Consensus 249 ~L~~L~L~~N 258 (306)
T 2z66_A 249 SLAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTC
T ss_pred cCCEEEccCC
Confidence 7888887644
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.17 E-value=7.1e-07 Score=90.04 Aligned_cols=172 Identities=17% Similarity=0.103 Sum_probs=88.1
Q ss_pred CCCcceEEeeecCCcceEEE------ECCCcceEEEcceee---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCc
Q 014227 211 SIPLKYLDIHYCYSMKEIEI------SASSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQ 281 (428)
Q Consensus 211 ~~~L~~L~l~~c~~l~~i~i------~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~ 281 (428)
+++|+.|++.++. +..+.. ..++|+.|++.+... +..+..+++|+.+++..+........ ..+ ..+++
T Consensus 346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~-~~l~~ 422 (570)
T 2z63_A 346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVF-LSLRN 422 (570)
T ss_dssp CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS-CTT-TTCTT
T ss_pred CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch-hhh-hcCCC
Confidence 4556666665554 222210 236666666655422 12255666777766654433221000 112 56677
Q ss_pred ceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC--c
Q 014227 282 LKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH--L 358 (428)
Q Consensus 282 l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~ 358 (428)
|+.|+++.+........ ...+++|++|++..+.... ..+...+..+|+|+.|++.... .....|.. .
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~ 492 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNS 492 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc---ccchhhhhcccCCCEEECCCCc-------cccCChhhhhc
Confidence 77777766643322211 5566777777773321110 0122345677788888775432 11112322 2
Q ss_pred cCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEecCc
Q 014227 359 HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSS 399 (428)
Q Consensus 359 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 399 (428)
..+|+.+.+.+-.-..-. ...+.+.+.|+.+.+...+
T Consensus 493 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVP----DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEeCCCCcCCCCC----HHHhhcccCCcEEEecCCc
Confidence 478999988763222111 1124678999999887553
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=1.1e-06 Score=78.23 Aligned_cols=190 Identities=13% Similarity=0.041 Sum_probs=109.0
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEE----EECCCcce
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIE----ISASSLVS 237 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~ 237 (428)
++|++|+|.+..+..-. ...+.++++|+.|.+.++..++.+.- -..+++|++|++.+|..+..+. -..++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 47888888877643211 11256788888888887763433221 1245788888888755555543 23578888
Q ss_pred EEEcceeee-e-ecCCCCCee---EEEEecc-CcchhhHHHhhccccCCcce-eEEeeeeeeeecccCCCCCCCccEEEE
Q 014227 238 FRYSGKDIK-L-HVGNVPQLV---DVVIHGA-PLFQVRYFIGLVVCCFPQLK-TLDLECCNEVFMEFGHWELPKLLHLKL 310 (428)
Q Consensus 238 L~~~~~~~~-~-~~~~~p~L~---~l~l~~~-~~~~~~~~~~l~~~~~~~l~-~L~l~~~~~~~~~~~~~~~~~L~~L~l 310 (428)
|.+.+.... + .+..+++|+ .+++..+ ....+.. ..+ ..+++|+ .|+++..............++|++|.+
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~-~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAF-QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT--TTT-TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcCc--ccc-cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 887765331 1 145566666 8888765 3332111 122 6788888 999877654421111222267888888
Q ss_pred Eeec-CCCCchhHHHHHHHhC-CCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee
Q 014227 311 TITE-PNCESLLGLSFVLKAC-PFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE 369 (428)
Q Consensus 311 ~~~~-~~~~~~~~l~~lL~~~-P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~ 369 (428)
..+. -.. .. ...+..+ ++|+.|++.... ... +|.....+|+.+.+.+
T Consensus 187 ~~n~~l~~--i~--~~~~~~l~~~L~~L~l~~N~-------l~~-l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 187 NKNKYLTV--ID--KDAFGGVYSGPSLLDVSQTS-------VTA-LPSKGLEHLKELIARN 235 (239)
T ss_dssp TTCTTCCE--EC--TTTTTTCSBCCSEEECTTCC-------CCC-CCCTTCTTCSEEECTT
T ss_pred CCCCCccc--CC--HHHhhccccCCcEEECCCCc-------ccc-CChhHhccCceeeccC
Confidence 4431 111 10 2234567 899999886431 112 4444567787777653
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.16 E-value=4.5e-07 Score=84.36 Aligned_cols=31 Identities=13% Similarity=-0.182 Sum_probs=14.7
Q ss_pred ceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227 282 LKTLDLECCNEVFMEFG-HWELPKLLHLKLTI 312 (428)
Q Consensus 282 l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 312 (428)
|+.|+++.+........ ...+++|+.|+|..
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 56666655533322111 44555666665533
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.15 E-value=4.4e-06 Score=83.28 Aligned_cols=216 Identities=14% Similarity=0.159 Sum_probs=117.8
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHh--cCCcccceeecccCCceeeEEe------cCCCC------------------
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIH--SCPHLEHLYVANSSELLSLKVV------GSSIP------------------ 213 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l~i~------~~~~~------------------ 213 (428)
+..+++|+.|++.++.+.+..+..+.. .++.|+.|.+.+|...+.+... ..++.
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 456788888888888887765555443 3578999998877532111000 12233
Q ss_pred --------cceEEeeecCCcceEE--EECCCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccC
Q 014227 214 --------LKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCF 279 (428)
Q Consensus 214 --------L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~ 279 (428)
|+.|.+.++. +..+. -..++|++|++.+... +..+..+++|+.+++..+...+++.+...+ ..+
T Consensus 296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTC
T ss_pred hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhC
Confidence 4444444443 11111 2456788888776643 223567888888888776655433222223 778
Q ss_pred CcceeEEeeeeeeee-cccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhC-CCccEEEEEEecCCCCcccccccCCc
Q 014227 280 PQLKTLDLECCNEVF-MEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKAC-PFLQKLVIKIWNNNRTIGEKRHQIPV 356 (428)
Q Consensus 280 ~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~-P~L~~L~i~~~~~~~~~~~~~~~~p~ 356 (428)
++|+.|+++.+.... .... ...+++|++|++..+..... +.... ++|+.|+++...- .. +|.
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~~L~~L~Ls~N~l-------~~-ip~ 438 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT-------IFRCLPPRIKVLDLHSNKI-------KS-IPK 438 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG-------GGGSCCTTCCEEECCSSCC-------CC-CCG
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc-------hhhhhcccCCEEECCCCcc-------cc-cch
Confidence 888888887775443 1111 45567788887744322110 11222 5777777765421 11 332
Q ss_pred C--ccCCccEEEEeeee--eCCchHHHHHHHHhcccccccEEEecC
Q 014227 357 H--LHQHLKVVELHEFR--WLQIDPEIAFFIFRNAKVLEKMIIKPS 398 (428)
Q Consensus 357 ~--~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~ 398 (428)
. ...+|+.+.+.+-+ ....+ .+.+.+.|+.+.+...
T Consensus 439 ~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLKSVPDG------IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSS
T ss_pred hhhcCCCCCEEECCCCcCCccCHH------HhccCCcccEEECcCC
Confidence 1 24566666666422 11111 2345667777766544
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.14 E-value=6.4e-07 Score=81.51 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~ 223 (428)
+..+++|+.|+|.+..+.+-. .+..+++|+.|.+.+|....... .-..+++|+.|++.++.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 445788888888877665421 36677888888887774322110 01234566666666654
No 55
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.14 E-value=1.5e-06 Score=79.86 Aligned_cols=147 Identities=19% Similarity=0.163 Sum_probs=84.7
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR 239 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~ 239 (428)
+..+++|+.|+|.++.+.+-.- +.++++|+.|.+.++.... +.--..+++|+.|+++++. +..+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i~~~~---------- 128 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-ISDIN---------- 128 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-CCCCG----------
T ss_pred HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-CCCCh----------
Confidence 4467888888888887654221 7788888888888775322 2112244677777776664 22210
Q ss_pred EcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCc
Q 014227 240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCES 319 (428)
Q Consensus 240 ~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 319 (428)
.+..+++|+.+++..+...++ ..+ ..+++|+.|.++.+..... .+...+++|++|.+..+....
T Consensus 129 --------~l~~l~~L~~L~l~~n~l~~~----~~l-~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L~~N~i~~-- 192 (291)
T 1h6t_A 129 --------GLVHLPQLESLYLGNNKITDI----TVL-SRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD-- 192 (291)
T ss_dssp --------GGGGCTTCCEEECCSSCCCCC----GGG-GGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB--
T ss_pred --------hhcCCCCCCEEEccCCcCCcc----hhh-ccCCCCCEEEccCCccccc-hhhcCCCccCEEECCCCcCCC--
Confidence 123455555555554433322 112 6677777777776643322 125666777777774432221
Q ss_pred hhHHHHHHHhCCCccEEEEEEe
Q 014227 320 LLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 320 ~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
.. . +..+++|+.|++...
T Consensus 193 l~---~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 193 LR---A-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CG---G-GTTCTTCSEEEEEEE
T ss_pred Ch---h-hccCCCCCEEECcCC
Confidence 21 1 567778888887765
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.13 E-value=5.5e-06 Score=84.17 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=5.3
Q ss_pred CCCeEEEEEe
Q 014227 126 KKVQNFELDF 135 (428)
Q Consensus 126 ~~l~~L~l~~ 135 (428)
++++.|++..
T Consensus 61 ~~L~~L~L~~ 70 (622)
T 3g06_A 61 AHITTLVIPD 70 (622)
T ss_dssp TTCSEEEECS
T ss_pred CCCcEEEecC
Confidence 3556665543
No 57
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.13 E-value=8.6e-07 Score=84.21 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=99.9
Q ss_pred CCc-ccceEEeeeEEeehH---HHHHHHhcC-CcccceeecccCCceee-E-E---ecCC-CCcceEEeeecCCcceEEE
Q 014227 162 GIK-SLRSLCLNALKVSGE---VLEFFIHSC-PHLEHLYVANSSELLSL-K-V---VGSS-IPLKYLDIHYCYSMKEIEI 230 (428)
Q Consensus 162 ~~~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~L~~~~~~~~l-~-i---~~~~-~~L~~L~l~~c~~l~~i~i 230 (428)
+++ +|++|+|+++.+.+. .+..++..+ +.|++|+|.+|...... . + -..+ ++|+.|++++|. +.....
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~ 126 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSS 126 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHH
Confidence 466 888888888887653 355555554 88888888887632210 0 0 1122 578888888776 332211
Q ss_pred E---------CCCcceEEEcceeeee--------ecCCCC-CeeEEEEeccCcch--hhHHHhhccccC-CcceeEEeee
Q 014227 231 S---------ASSLVSFRYSGKDIKL--------HVGNVP-QLVDVVIHGAPLFQ--VRYFIGLVVCCF-PQLKTLDLEC 289 (428)
Q Consensus 231 ~---------ap~L~~L~~~~~~~~~--------~~~~~p-~L~~l~l~~~~~~~--~~~~~~l~~~~~-~~l~~L~l~~ 289 (428)
. ..+|++|++.+..+.. .+...+ +|+++++..+...+ ...+...+ ..+ ++|+.|+++.
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-ASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-HhCCCCCCEEECCC
Confidence 1 1377777777653320 112333 77777776655443 11222333 455 4777777766
Q ss_pred eeeeecc---cC--CCC-CCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 290 CNEVFME---FG--HWE-LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 290 ~~~~~~~---~~--~~~-~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
+...... ++ ... .++|++|+|..+.........+..+++.+++|+.|++...
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 6433211 11 112 3477777775554444444455566667777777777654
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.13 E-value=2.2e-06 Score=79.53 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=66.5
Q ss_pred eeEEEEEeecCCCccchHHHHHHHHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCC--CCCcccceEEeeeEEe
Q 014227 99 INKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGL--SGIKSLRSLCLNALKV 176 (428)
Q Consensus 99 l~~l~l~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~ 176 (428)
++.+.+.- .......+..........++++|++...... ... |..+ ..+++|++|+|.+..+
T Consensus 66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~----------~~~~~~~~~~~L~~L~Ls~n~i 129 (310)
T 4glp_A 66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKIT----GTM----------PPLPLEATGLALSSLRLRNVSW 129 (310)
T ss_dssp CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCB----SCC----------CCCSSSCCCBCCSSCEEESCCC
T ss_pred eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEec----cch----------hhhhhhccCCCCCEEEeecccc
Confidence 55555431 1122234555666666678999999665422 111 1222 5689999999999988
Q ss_pred ehHH--HH-HHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecC
Q 014227 177 SGEV--LE-FFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 177 ~~~~--l~-~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~ 223 (428)
.+.. +. .-+..+++|+.|.|.++...... ..-..+++|+.|+++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 130 ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 7521 11 22458999999999988643221 111245778888887775
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.12 E-value=8.7e-07 Score=80.59 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=103.1
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI----SASSLVS 237 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 237 (428)
.+++|+.|.+.+..+.+-. -+..+|+|+.|.+.++.... +..-..+++|+.|++.+|. +..+.- ..++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 3677888888777654321 16678888888888775322 2222345788888888775 333321 2477888
Q ss_pred EEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227 238 FRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTI 312 (428)
Q Consensus 238 L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 312 (428)
|.+.+..+. + .+..+++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|++..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH--HHh-ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 888776442 2 25667888888887665443110 222 6778888888877754322111 45677888888854
Q ss_pred ecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 313 TEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 313 ~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
+...... ...+..+++|+.|++...+
T Consensus 191 N~l~~~~----~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 191 NQLKSVP----DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred CcCCccC----HHHHhCCcCCCEEEccCCC
Confidence 4322211 2345678888888887654
No 60
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.12 E-value=2e-06 Score=88.17 Aligned_cols=194 Identities=10% Similarity=0.036 Sum_probs=114.9
Q ss_pred CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEE-eehHHHHHHH------hcCCcccceeecc
Q 014227 126 KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK-VSGEVLEFFI------HSCPHLEHLYVAN 198 (428)
Q Consensus 126 ~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll------~~cp~Le~L~L~~ 198 (428)
+++++|++..+... .. +|..+.++++|++|+|.++. +.+..+..-+ ..+++|+.|.+.+
T Consensus 249 ~~L~~L~L~~n~l~----~~----------~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 249 KDLTDVEVYNCPNL----TK----------LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTCCEEEEECCTTC----SS----------CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred CCCCEEEecCCcCC----cc----------ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 47888888655321 12 34456779999999999997 6652333223 3469999999998
Q ss_pred cCCceeeE--EecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceeee---eecCCCCC-eeEEEEeccCcchhhH
Q 014227 199 SSELLSLK--VVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIK---LHVGNVPQ-LVDVVIHGAPLFQVRY 270 (428)
Q Consensus 199 ~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~---~~~~~~p~-L~~l~l~~~~~~~~~~ 270 (428)
+....... .-..+++|+.|++.++..-..+. -..++|+.|.+.+.... -.+.++++ |+.+++..+....+..
T Consensus 315 n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred CcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 86542111 12356789999998886321332 23467888888776442 23456677 8888887655442211
Q ss_pred HHhhcccc--CCcceeEEeeeeeeeecccC-CC-------CCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 271 FIGLVVCC--FPQLKTLDLECCNEVFMEFG-HW-------ELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 271 ~~~l~~~~--~~~l~~L~l~~~~~~~~~~~-~~-------~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
.+ .. +++|+.|+++.+......-. .. .+++|++|++..+.... .. ..+++.+++|+.|++..
T Consensus 395 ---~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp--~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 395 ---IF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK--FP--KELFSTGSPLSSINLMG 466 (636)
T ss_dssp ---CC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CC--THHHHTTCCCSEEECCS
T ss_pred ---hh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc--CC--HHHHccCCCCCEEECCC
Confidence 11 22 34788888876643221101 22 45578887775443221 11 24456778888888765
Q ss_pred e
Q 014227 341 W 341 (428)
Q Consensus 341 ~ 341 (428)
.
T Consensus 467 N 467 (636)
T 4eco_A 467 N 467 (636)
T ss_dssp S
T ss_pred C
Confidence 3
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1.6e-07 Score=98.85 Aligned_cols=151 Identities=9% Similarity=0.068 Sum_probs=85.6
Q ss_pred CCCCCCCCcccceEEeeeEEeehH----------------HHHHHHh--cCCcccceeecccCCceeeE-EecCCCCcce
Q 014227 156 RGHGLSGIKSLRSLCLNALKVSGE----------------VLEFFIH--SCPHLEHLYVANSSELLSLK-VVGSSIPLKY 216 (428)
Q Consensus 156 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~ 216 (428)
+|..+.++++|+.|+|.+..+.++ .+..-+. ++++|+.|.|.+|...+.+. .-..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 455566778888888888776652 1233333 77888888887776443221 1124567777
Q ss_pred EEeeecCCcce--EE----------EECCCcceEEEcceee---ee--ecCCCCCeeEEEEeccCcchhhHHHhhccccC
Q 014227 217 LDIHYCYSMKE--IE----------ISASSLVSFRYSGKDI---KL--HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCF 279 (428)
Q Consensus 217 L~l~~c~~l~~--i~----------i~ap~L~~L~~~~~~~---~~--~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~ 279 (428)
|+++++..+.. +. ...|+|+.|.+.+..+ +. .+.++++|+.+++..+....+. .+ ..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~-~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AF-GTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----CC-CTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----hh-cCC
Confidence 77777652221 10 1124777777766533 22 3556777777777655433222 12 566
Q ss_pred CcceeEEeeeeeeeecccC--CCCCCC-ccEEEEEee
Q 014227 280 PQLKTLDLECCNEVFMEFG--HWELPK-LLHLKLTIT 313 (428)
Q Consensus 280 ~~l~~L~l~~~~~~~~~~~--~~~~~~-L~~L~l~~~ 313 (428)
++|+.|.++.+... .+| ...+++ |++|.|..+
T Consensus 595 ~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp SEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSS
T ss_pred CcceEEECcCCccc--cchHHHhhccccCCEEECcCC
Confidence 67777777665443 233 445555 777666443
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.11 E-value=8.3e-07 Score=82.53 Aligned_cols=192 Identities=17% Similarity=0.029 Sum_probs=120.3
Q ss_pred CCCeEEEEEe-CCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee
Q 014227 126 KKVQNFELDF-WPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS 204 (428)
Q Consensus 126 ~~l~~L~l~~-~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~ 204 (428)
++++.|++.. .... ..+| ..+..+++|++|+|.+..+.+. +...+.++++|+.|+|.++...+.
T Consensus 76 ~~L~~L~L~~~n~l~----~~~p----------~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ 140 (313)
T 1ogq_A 76 PYLNFLYIGGINNLV----GPIP----------PAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp TTCSEEEEEEETTEE----SCCC----------GGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESC
T ss_pred CCCCeeeCCCCCccc----ccCC----------hhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCc
Confidence 5788888862 3211 1223 3355789999999998876532 112367889999999988763321
Q ss_pred e-EEecCCCCcceEEeeecCCcceEE---EECC-CcceEEEcceeee----eecCCCCCeeEEEEeccCcch-hhHHHhh
Q 014227 205 L-KVVGSSIPLKYLDIHYCYSMKEIE---ISAS-SLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQ-VRYFIGL 274 (428)
Q Consensus 205 l-~i~~~~~~L~~L~l~~c~~l~~i~---i~ap-~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~-~~~~~~l 274 (428)
+ ..-..+++|+.|+++++.--..+. ...+ +|+.|.+.+.... ..+..++ |+.+++..+.... .. ..
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~---~~ 216 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS---VL 216 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG---GG
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC---HH
Confidence 1 111246889999998886211221 1223 8899988876442 2334454 8888887654432 11 23
Q ss_pred ccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 275 VVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 275 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
+ ..+++|+.|.++.+......-....+++|++|+|..+.... .+...+..+++|+.|++...
T Consensus 217 ~-~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 217 F-GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp C-CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSS
T ss_pred H-hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC----cCChHHhcCcCCCEEECcCC
Confidence 3 78999999999887554322225677899999995543221 12334678999999999754
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.10 E-value=7.9e-07 Score=80.75 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=28.6
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecC
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCY 223 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 223 (428)
++|+.|+|.+..+..-. ...+.++++|+.|.|.++... .+.- -..+++|+.|++.++.
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc
Confidence 46677777666543211 112456667777777665421 1110 0123556666665553
No 64
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.09 E-value=1.9e-06 Score=90.29 Aligned_cols=176 Identities=19% Similarity=0.132 Sum_probs=93.4
Q ss_pred CCCcccceEEeeeEEeehHHHH--HHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcc
Q 014227 161 SGIKSLRSLCLNALKVSGEVLE--FFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLV 236 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~ 236 (428)
..+++|++|+|+++.+.+.... ..+.+|++|+.|.+.+|...+...+ ..+++|+.|++.+|.....+. -..++|+
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 5678888888888876553322 2367788888888877754332222 345777777777765221111 1235666
Q ss_pred eEEEcceee----eeecCCCCCeeEEEEeccCcch-hh-------------------HHH-hhccccCCcceeEEeeeee
Q 014227 237 SFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQ-VR-------------------YFI-GLVVCCFPQLKTLDLECCN 291 (428)
Q Consensus 237 ~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~-~~-------------------~~~-~l~~~~~~~l~~L~l~~~~ 291 (428)
+|++.+... +..+.++++|+.+++..+.... .. .+- .+. ..+++|+.|+++.+.
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNH 305 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSC-TTCTTCSEEECCSSE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHH-hhcCcCCEEECcCCc
Confidence 666655432 1234455566666554443221 00 000 111 224666666666554
Q ss_pred eeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 292 EVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 292 ~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
.....-. ...+++|++|++..+.... ... ...+..+++|+.|++...
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~-~ip--~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSG-ELP--MDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEE-ECC--HHHHTTCTTCCEEECCSS
T ss_pred CCCccchHHhcCCCccEEECCCCcccC-cCC--HHHHhcCCCCCEEeCcCC
Confidence 3322111 5566777777774332110 111 234567888888888654
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.09 E-value=3.7e-05 Score=76.56 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=44.6
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE-ECCCcceEEEc
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFRYS 241 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~~ 241 (428)
++|+.|+|+++.+.+-. ...+.++++|+.|.|.++...+.. ..-..+++|++|+++++. +..+.. ..++|++|++.
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEECC
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEecc
Confidence 55566665555543211 112455555666666555422110 011234555555555553 222211 34555555555
Q ss_pred ceee-----eeecCCCCCeeEEEEeccC
Q 014227 242 GKDI-----KLHVGNVPQLVDVVIHGAP 264 (428)
Q Consensus 242 ~~~~-----~~~~~~~p~L~~l~l~~~~ 264 (428)
+... +..+.++++|+.+++..+.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred CCccccccchhhhccCCcceEEEecCcc
Confidence 4422 1234455555555555443
No 66
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.08 E-value=8.5e-07 Score=84.24 Aligned_cols=173 Identities=12% Similarity=0.007 Sum_probs=104.2
Q ss_pred CcccceEEeeeEEeeh---HHHHHHHhcC-CcccceeecccCCceee--EEe---cC-CCCcceEEeeecCCcceEEE--
Q 014227 163 IKSLRSLCLNALKVSG---EVLEFFIHSC-PHLEHLYVANSSELLSL--KVV---GS-SIPLKYLDIHYCYSMKEIEI-- 230 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~L~~~~~~~~l--~i~---~~-~~~L~~L~l~~c~~l~~i~i-- 230 (428)
+++|++|+|.++.+.+ ..+...+..+ +.|+.|+|.+|...... .+. .. .++|++|++++|. +.....
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~ 157 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE 157 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence 3889999999988764 3455666677 78999999888632210 010 01 2589999998876 221110
Q ss_pred ------EC-CCcceEEEcceeee-e-------ecCCC-CCeeEEEEeccCcch--hhHHHhhcccc-CCcceeEEeeeee
Q 014227 231 ------SA-SSLVSFRYSGKDIK-L-------HVGNV-PQLVDVVIHGAPLFQ--VRYFIGLVVCC-FPQLKTLDLECCN 291 (428)
Q Consensus 231 ------~a-p~L~~L~~~~~~~~-~-------~~~~~-p~L~~l~l~~~~~~~--~~~~~~l~~~~-~~~l~~L~l~~~~ 291 (428)
.. ++|++|++.+..+. . .+... ++|+.+++..+...+ ...+...+ .. .++|+.|+++++.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF-SSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HHSCTTCCEEECCSSC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH-hcCCCCceEEECcCCC
Confidence 12 38999988876442 1 12344 489999887776554 11222222 33 4689999998775
Q ss_pred eeeccc---C--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEE
Q 014227 292 EVFMEF---G--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLV 337 (428)
Q Consensus 292 ~~~~~~---~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~ 337 (428)
...... . ...+++|++|+|..+........++..+.+.+++++.|.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 443221 1 466788999998766433344444555555555544443
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.08 E-value=1e-06 Score=89.72 Aligned_cols=147 Identities=20% Similarity=0.136 Sum_probs=92.5
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SAS 233 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap 233 (428)
.+..+++|+.|+|.+..+.. +..-+.++++|+.|.+.++...... ..-..+++|+.|++.++.....+.. ..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 36778999999999887642 2222678899999999988643321 1123468999999998863322221 358
Q ss_pred CcceEEEcceeee------eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCc
Q 014227 234 SLVSFRYSGKDIK------LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKL 305 (428)
Q Consensus 234 ~L~~L~~~~~~~~------~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L 305 (428)
+|+.|++.+.... ..+..+++|+.+++..+....... ..+ ..+++|+.|+++.+.......+ ...+++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--TTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--HHh-cCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8999998876442 236789999999997765433100 112 5667777777765543322211 3445555
Q ss_pred cEEEE
Q 014227 306 LHLKL 310 (428)
Q Consensus 306 ~~L~l 310 (428)
++|++
T Consensus 428 ~~L~l 432 (606)
T 3t6q_A 428 KVLNL 432 (606)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 55555
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.06 E-value=9.5e-07 Score=89.60 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 237 (428)
+..+++|+.|+|.++.+.+-.- +..+++|+.|.|.+|.... +..-..+++|+.|.+.+|. +..+. ...|+|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence 4568888888888887654221 7788888888888875322 2222345777778777775 22221 12355555
Q ss_pred EEEcceeee--eecCCCCCeeEEEEecc
Q 014227 238 FRYSGKDIK--LHVGNVPQLVDVVIHGA 263 (428)
Q Consensus 238 L~~~~~~~~--~~~~~~p~L~~l~l~~~ 263 (428)
|.+.+..+. -.+..+++|+.+.+..+
T Consensus 136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 136 LYLGNNKITDITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp EECCSSCCCCCGGGGSCTTCSEEECCSS
T ss_pred EECCCCccCCchhhcccCCCCEEECcCC
Confidence 555544321 12334444444444433
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.03 E-value=4.4e-06 Score=81.94 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=46.5
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceEE
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFR 239 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~ 239 (428)
.++++|++|+|.+..+.+-. +..+++|+.|.+.++...+ +.+ ..+++|+.|++..|.....+.+ ..++|+.|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~-l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTE-IDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSC-CCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccce-ecc-ccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 34566666666666554321 4556666666666554222 222 2335556665555543333322 124555555
Q ss_pred Ecceee-eeecCCCCCeeEEEEecc
Q 014227 240 YSGKDI-KLHVGNVPQLVDVVIHGA 263 (428)
Q Consensus 240 ~~~~~~-~~~~~~~p~L~~l~l~~~ 263 (428)
+.+..+ .+.+..+++|+.+++..+
T Consensus 177 ls~n~l~~l~l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 177 CSFNKITELDVSQNKLLNRLNCDTN 201 (457)
T ss_dssp CCSSCCCCCCCTTCTTCCEEECCSS
T ss_pred CCCCccceeccccCCCCCEEECcCC
Confidence 544432 223445555555555443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.02 E-value=1.5e-06 Score=80.73 Aligned_cols=137 Identities=20% Similarity=0.053 Sum_probs=65.8
Q ss_pred CCCcccceEEeeeEEeehH--HHHHHHh-cCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEECCCcc
Q 014227 161 SGIKSLRSLCLNALKVSGE--VLEFFIH-SCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLV 236 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~ 236 (428)
..+++|++|+|.+..+.+. .+..+.. .+++|+.|.|.++...... ..-..+++|+.|+++++...+.+.+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------ 191 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL------ 191 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH------
Confidence 5678888888888876543 2322211 1378888888877532211 0111345666666666642111000
Q ss_pred eEEEcceeeeeecCCCCCeeEEEEeccCcchhhHHH-hhccccCCcceeEEeeeeeeeecc-cC-CCCCCCccEEEEE
Q 014227 237 SFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFI-GLVVCCFPQLKTLDLECCNEVFME-FG-HWELPKLLHLKLT 311 (428)
Q Consensus 237 ~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~ 311 (428)
...+.+..+++|+++++..+....+..+. .+. ..+++|+.|+++.+...... .+ ...+++|++|+++
T Consensus 192 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 192 -------ISALCPLKFPTLQVLALRNAGMETPSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp -------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred -------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 00011244555555555444433222111 222 45566666666555333222 11 2334566666663
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=4.2e-06 Score=88.20 Aligned_cols=192 Identities=11% Similarity=0.126 Sum_probs=104.1
Q ss_pred CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEE-eehHH----HHHH---HhcCCcccceeec
Q 014227 126 KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK-VSGEV----LEFF---IHSCPHLEHLYVA 197 (428)
Q Consensus 126 ~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~----l~~l---l~~cp~Le~L~L~ 197 (428)
++++.|++..+... ..+| ..+.++++|+.|+|.+.. +.+.. +..+ +..+|+|+.|.|.
T Consensus 491 ~~L~~L~Ls~N~l~----~~iP----------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 491 KDLTDVELYNCPNM----TQLP----------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TTCCEEEEESCTTC----CSCC----------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred CCCCEEECcCCCCC----ccCh----------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 57888888665321 1333 234568888888888886 55412 2222 2456688888888
Q ss_pred ccCCceeeEE---ecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceeee---eecCCCCC-eeEEEEeccCcchh
Q 014227 198 NSSELLSLKV---VGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIK---LHVGNVPQ-LVDVVIHGAPLFQV 268 (428)
Q Consensus 198 ~~~~~~~l~i---~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~---~~~~~~p~-L~~l~l~~~~~~~~ 268 (428)
++... .+.- -..+++|+.|+++++. +..+. -..++|+.|.+.+..+. -.+.++++ |+.+.+..+....+
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC
Confidence 87643 2211 2245778888887775 23332 12367777777665332 23455666 77777765544322
Q ss_pred hHHHhhccccC--CcceeEEeeeeeeeecc--cC----CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 269 RYFIGLVVCCF--PQLKTLDLECCNEVFME--FG----HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 269 ~~~~~l~~~~~--~~l~~L~l~~~~~~~~~--~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
. ..+ ... ++|+.|.++.+...... ++ ....++|+.|+|..+... ... ..++..+++|+.|++..
T Consensus 635 p---~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp--~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 635 P---NIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFP--TELFATGSPISTIILSN 706 (876)
T ss_dssp C---SCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCC--HHHHHTTCCCSEEECCS
T ss_pred c---hhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--ccC--HHHHccCCCCCEEECCC
Confidence 1 111 222 33777777665332210 11 112346777766443222 111 33455677777777764
Q ss_pred e
Q 014227 341 W 341 (428)
Q Consensus 341 ~ 341 (428)
.
T Consensus 707 N 707 (876)
T 4ecn_A 707 N 707 (876)
T ss_dssp C
T ss_pred C
Confidence 3
No 72
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=2.4e-06 Score=71.50 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=33.0
Q ss_pred CCcccceEEeeeEE-eehHHHHHHHhc---CCcccceeecccCCceeeEE--ecCCCCcceEEeeecCC
Q 014227 162 GIKSLRSLCLNALK-VSGEVLEFFIHS---CPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYS 224 (428)
Q Consensus 162 ~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~ 224 (428)
+|++|++|+|.+|. ++|..+..+... |+.|+.|+|.+|..+++-.+ -+.+++|++|++.+|+.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 45666666666664 555555554432 55666666666654442111 12345566666655554
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.00 E-value=6.6e-06 Score=73.07 Aligned_cols=167 Identities=11% Similarity=0.075 Sum_probs=101.1
Q ss_pred CCCCcccceEEeeeEE-eehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEE--EECCC
Q 014227 160 LSGIKSLRSLCLNALK-VSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIE--ISASS 234 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~--i~ap~ 234 (428)
+.++++|++|+|.+.. +..-. ...+.++++|+.|.+.+|..+..+.- -..+++|+.|++.++. +..+. -..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccccccccc
Confidence 4578999999998874 42210 11257889999999988655554321 1245789999998875 22221 12355
Q ss_pred cc---eEEEcce-ee-ee---ecCCCCCee-EEEEeccCcchhhHHHhhccccCCcceeEEeeeee-eeecccC-CCCC-
Q 014227 235 LV---SFRYSGK-DI-KL---HVGNVPQLV-DVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN-EVFMEFG-HWEL- 302 (428)
Q Consensus 235 L~---~L~~~~~-~~-~~---~~~~~p~L~-~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~~~-~~~~- 302 (428)
|+ .|++.+. .. .+ .+.++++|+ .+++.......+.. ... .. ++|+.|+++.+. ....... ...+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--~~~-~~-~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG--YAF-NG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT--TTT-TT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH--hhc-CC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence 65 7777765 33 22 256788898 88886654433211 111 33 789999998773 4322111 4556
Q ss_pred CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
++|++|++..+....... ..+++|+.|.+.
T Consensus 205 ~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~ 234 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTALPS-------KGLEHLKELIAR 234 (239)
T ss_dssp BCCSEEECTTCCCCCCCC-------TTCTTCSEEECT
T ss_pred cCCcEEECCCCccccCCh-------hHhccCceeecc
Confidence 889999885432222111 167888888874
No 74
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.99 E-value=3e-06 Score=82.89 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=86.3
Q ss_pred CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
++|+.|++.+.... ..+..+++|+.+++..+....... ..+ ..+++|+.|+++.+........ ...+++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD--NAF-WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--TTT-TTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh--hHh-cCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 57888887766432 236678899999997665543110 123 7889999999988755332212 677899999
Q ss_pred EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc---CccCCccEEEEee--eeeCCchHHHHHH
Q 014227 308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV---HLHQHLKVVELHE--FRWLQIDPEIAFF 382 (428)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~---~~~~~L~~v~i~~--f~g~~~e~~~~~~ 382 (428)
|+|..+...... ...+..+|+|+.|++.... ... .|. ....+|+.+.+.+ +.+.-..+.++..
T Consensus 352 L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~-------l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 419 (455)
T 3v47_A 352 LDLSYNHIRALG----DQSFLGLPNLKELALDTNQ-------LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419 (455)
T ss_dssp EECCSSCCCEEC----TTTTTTCTTCCEEECCSSC-------CSC-CCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHH
T ss_pred EECCCCcccccC----hhhccccccccEEECCCCc-------ccc-CCHhHhccCCcccEEEccCCCcccCCCcchHHHH
Confidence 999554322211 2335679999999997642 111 222 1357899999886 4455444555544
Q ss_pred HH
Q 014227 383 IF 384 (428)
Q Consensus 383 ll 384 (428)
.+
T Consensus 420 ~l 421 (455)
T 3v47_A 420 WL 421 (455)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.98 E-value=1.2e-06 Score=79.69 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=62.2
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI----SASSLVS 237 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 237 (428)
++|++|+|.+..+.+-.. ..+.++++|+.|.+.++... .+.. -..+++|+.|+++++. +..+.. ..++|+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 467777777765443111 12566777777777776432 1111 1234667777776664 232221 1356666
Q ss_pred EEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227 238 FRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN 291 (428)
Q Consensus 238 L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~ 291 (428)
|.+.+.... ..+..+++|+.+++..+....+. +...+ ..+++|+.|+++.+.
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~-~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYF-SNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGG-GGCTTCCEEECCSSC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceec-Cchhh-ccCCCCCEEECCCCC
Confidence 666544221 13455666666666544333200 00112 556666666666553
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.96 E-value=4.7e-06 Score=76.53 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS 237 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 237 (428)
+.++++|+.|+|.+..+.+- .. +..+++|+.|++.+|.... +.--..+++|+.|+++++. +..+. -..++|+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCE
Confidence 55799999999999987652 22 7889999999999986432 2222345788888888875 22221 01245555
Q ss_pred EEEcce
Q 014227 238 FRYSGK 243 (428)
Q Consensus 238 L~~~~~ 243 (428)
|++.+.
T Consensus 161 L~L~~N 166 (291)
T 1h6t_A 161 LSLEDN 166 (291)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 555444
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.95 E-value=4.4e-06 Score=75.76 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=57.1
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SAS 233 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap 233 (428)
.+.++++|++|+|.+..+..- ...++.++++|+.|.|.++...... .+-..+++|+.|.+.++. +..+.. ..+
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 356789999999998876421 1123577899999999887532210 111235678888777765 222211 235
Q ss_pred CcceEEEcceeee-e---ecCCCCCeeEEEEec
Q 014227 234 SLVSFRYSGKDIK-L---HVGNVPQLVDVVIHG 262 (428)
Q Consensus 234 ~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~ 262 (428)
+|+.|++.+..+. + .+..+++|+.+++..
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 5555555544221 1 133444555555543
No 78
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.94 E-value=3.9e-06 Score=76.03 Aligned_cols=36 Identities=22% Similarity=0.632 Sum_probs=34.0
Q ss_pred ccCCCCcHHHHHHHHhcCChHHHH-HHHHhhHHHhhh
Q 014227 21 DWFSKFPDDILVNIISRLTLKEAA-RTSVLSSRWKYL 56 (428)
Q Consensus 21 D~~s~LPd~iL~~Ils~L~~~d~~-~~s~vskrWr~l 56 (428)
..+..||||++.+||++||.++++ ++++|||+||++
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 79
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.94 E-value=2.5e-06 Score=86.82 Aligned_cols=122 Identities=10% Similarity=0.046 Sum_probs=82.5
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceE
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSF 238 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L 238 (428)
+..+++|+.|++.++.+..-. .+..++.|+.|.+.+|.. +.+.-. .+++|+.|++.++.....+.+ ..|+|+.|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 567899999999988764422 367889999999999876 322211 568999999999865444432 45899999
Q ss_pred EEcceeee------eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeee
Q 014227 239 RYSGKDIK------LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECC 290 (428)
Q Consensus 239 ~~~~~~~~------~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~ 290 (428)
++.+.... ..+..+++|+.+++..+....+. ..+ ..+++|+.|.++.+
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~-~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANF-MGLEELQHLDFQHS 409 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC---CCC-TTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccch---hhc-cCCCCCCeeECCCC
Confidence 98876432 23567899999998766543211 111 45556666666544
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.93 E-value=4.1e-06 Score=78.32 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
+.++++|++|+|.+..+.+-. ...+.++++|+.|.+.++... .+... ..++|+.|.+.++.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEK-MPKTLQELRVHENE 132 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCS-BCCSS-CCTTCCEEECCSSC
T ss_pred hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCC-ccChh-hcccccEEECCCCc
Confidence 445677777777766543211 112556677777777665422 11111 11456666665554
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.93 E-value=3.5e-06 Score=85.41 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=59.0
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRY 240 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~ 240 (428)
+++|+.|.|.++.+.+-. -+..|++|+.|.|.+|....... -..+++|+.|.+.+|. +..+. -..++|+.|.+
T Consensus 42 L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence 445555555554433211 14455555555555553221111 1233555555555553 11111 11245555555
Q ss_pred cceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227 241 SGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT 311 (428)
Q Consensus 241 ~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 311 (428)
.+..+. -.+..+++|+.+.+..+...++ ..+ ..+++|+.|.|+.+..... .+...+++|++|.|.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l----~~l-~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI----TVL-SRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 183 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC----GGG-GSCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECC
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc----hhh-cccCCCCEEECcCCcCCCc-hhhccCCCCCEEECc
Confidence 444321 1233455555555544433322 112 4555555555554432211 114445555555553
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.91 E-value=1.4e-06 Score=80.87 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=123.9
Q ss_pred cceEEeeeEEeehHHHHHH-------HhcCCcccceeecccCCceeeEE---ecCCCCcceEEeeecCCcceEE---EE-
Q 014227 166 LRSLCLNALKVSGEVLEFF-------IHSCPHLEHLYVANSSELLSLKV---VGSSIPLKYLDIHYCYSMKEIE---IS- 231 (428)
Q Consensus 166 L~~L~L~~~~~~~~~l~~l-------l~~cp~Le~L~L~~~~~~~~l~i---~~~~~~L~~L~l~~c~~l~~i~---i~- 231 (428)
|+.|+|.+..+....+... ..++++|+.|.|.++...+.+.. ...+++|+.|+++++. +..+. -.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 6666666655532111111 12577888888877754322111 1345778888887765 22210 01
Q ss_pred ----CCCcceEEEcceeee----eecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeec-ccC---
Q 014227 232 ----ASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFM-EFG--- 298 (428)
Q Consensus 232 ----ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~--- 298 (428)
.++|++|++.+..+. -.+.++++|+.+++..+.... ......+....+++|+.|.++.+..... ..+
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 278888888776432 246688999999998776433 1111122126789999999988755421 111
Q ss_pred CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee--eeeCCch
Q 014227 299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE--FRWLQID 376 (428)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~--f~g~~~e 376 (428)
...+++|++|++..+....... ...+..+++|+.|++.... ... +|.....+|+.+.+.+ +++..
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~-------l~~-ip~~~~~~L~~L~Ls~N~l~~~p-- 290 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTG-------LKQ-VPKGLPAKLSVLDLSYNRLDRNP-- 290 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSC-------CSS-CCSSCCSEEEEEECCSSCCCSCC--
T ss_pred HhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCc-------cCh-hhhhccCCceEEECCCCCCCCCh--
Confidence 3466899999995543222110 1122457899999997542 222 5655557888888875 22221
Q ss_pred HHHHHHHHhcccccccEEEecC
Q 014227 377 PEIAFFIFRNAKVLEKMIIKPS 398 (428)
Q Consensus 377 ~~~~~~ll~~a~~L~~l~i~~~ 398 (428)
. +.+.+.|+.+.+...
T Consensus 291 -~-----~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 291 -S-----PDELPQVGNLSLKGN 306 (312)
T ss_dssp -C-----TTTSCEEEEEECTTC
T ss_pred -h-----HhhCCCCCEEeccCC
Confidence 1 356788888877543
No 83
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.89 E-value=2.7e-06 Score=76.22 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227 23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56 (428)
Q Consensus 23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 56 (428)
|+.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999999999999999973
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.89 E-value=2.7e-06 Score=78.12 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=52.4
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE---ECCCcceEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI---SASSLVSFR 239 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~ap~L~~L~ 239 (428)
+++|+.|+|.+..+..-. ...+.++++|+.|.|.++.. ..+.....+++|+.|+++++. +..+.- ..++|+.|.
T Consensus 30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence 467888888877653311 11366788888888887653 222222455777777777664 222211 124555555
Q ss_pred Ecceeee----eecCCCCCeeEEEEecc
Q 014227 240 YSGKDIK----LHVGNVPQLVDVVIHGA 263 (428)
Q Consensus 240 ~~~~~~~----~~~~~~p~L~~l~l~~~ 263 (428)
+.+..+. -.+.++++|+.+++..+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 5544321 11334445555554433
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.87 E-value=6.5e-05 Score=79.48 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=35.9
Q ss_pred CCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 233 SSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 233 p~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
++|+.|++.+... +..+..+++|+.+++..+....... ..+ ..+++|+.|+++.+........ ...+++|+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD--EAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT--TTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh--HHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 4566666655432 1234556666666665554332100 112 5556666666655533211111 344455555
Q ss_pred EEEE
Q 014227 308 LKLT 311 (428)
Q Consensus 308 L~l~ 311 (428)
|++.
T Consensus 343 L~L~ 346 (844)
T 3j0a_A 343 IDLQ 346 (844)
T ss_dssp EECC
T ss_pred EECC
Confidence 5553
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=1e-05 Score=73.09 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=58.4
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY 240 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 240 (428)
..+++|+.|+|.+..+.+-.- +.++++|+.|.+.++.....-.+.. ++|+.|+++++. +..+
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~------------ 121 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDT------------ 121 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBS------------
T ss_pred hhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCC------------
Confidence 345666666666655443211 5556666666665553211101111 344444444432 1110
Q ss_pred cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeec
Q 014227 241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITE 314 (428)
Q Consensus 241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 314 (428)
-.+..+++|+.+++..+...++. .+ ..+++|+.|.++.+..... -....+++|+.|++..+.
T Consensus 122 ------~~l~~l~~L~~L~Ls~N~i~~~~----~l-~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 122 ------DSLIHLKNLEILSIRNNKLKSIV----ML-GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ------GGGTTCTTCCEEECTTSCCCBCG----GG-GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ------hhhcCcccccEEECCCCcCCCCh----HH-ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 12445566666666544433321 12 5566666666665543322 225556666666665543
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.86 E-value=3.1e-06 Score=76.98 Aligned_cols=176 Identities=15% Similarity=0.103 Sum_probs=105.6
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceE---E-EECCC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEI---E-ISASS 234 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i---~-i~ap~ 234 (428)
+.++++|++|+|.+..+.+-. ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++.. ..+ . -..++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~ 125 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKT 125 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTT
T ss_pred hccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc-cccCchhcccCCC
Confidence 557899999999888654311 113677899999999887632211 1112457889998887752 211 1 13478
Q ss_pred cceEEEcceee-----eeecCCCCCeeEEEEeccCcchhh-HHHhhccccCCcce-eEEeeeeeeeecccCCCCCCCccE
Q 014227 235 LVSFRYSGKDI-----KLHVGNVPQLVDVVIHGAPLFQVR-YFIGLVVCCFPQLK-TLDLECCNEVFMEFGHWELPKLLH 307 (428)
Q Consensus 235 L~~L~~~~~~~-----~~~~~~~p~L~~l~l~~~~~~~~~-~~~~l~~~~~~~l~-~L~l~~~~~~~~~~~~~~~~~L~~ 307 (428)
|+.|.+.+... +..+.++++|+.+++..+....+. ..+.-+ ..++.+. .|+++...............+|++
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCccccCCCcccE
Confidence 99998876643 234667899999999876654311 111111 3333333 677766644332222333447888
Q ss_pred EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227 308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
|++..+...... ..++..+++|+.|++...+
T Consensus 205 L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTNQLKSVP----DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCSCCC----TTTTTTCCSCCEEECCSSC
T ss_pred EECCCCceeecC----HhHhcccccccEEEccCCc
Confidence 888554322211 2345778999999887543
No 88
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=1.2e-06 Score=73.44 Aligned_cols=63 Identities=5% Similarity=0.034 Sum_probs=49.8
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEec--C----CCCcceEEeeecCCcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVG--S----SIPLKYLDIHYCYSMK 226 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~--~----~~~L~~L~l~~c~~l~ 226 (428)
-.+|+.|+|+++.+++..+..+ .+|++|+.|.|.+|..+++-.+.. . +++|++|++++|..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 4589999999999999888774 899999999999998776432221 1 2479999999998544
No 89
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.85 E-value=1.7e-06 Score=88.66 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=101.6
Q ss_pred CCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCc-ccceeecccCCceeeEEec--CCCCcceEEeeecCCcce----E
Q 014227 156 RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPH-LEHLYVANSSELLSLKVVG--SSIPLKYLDIHYCYSMKE----I 228 (428)
Q Consensus 156 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L~L~~~~~~~~l~i~~--~~~~L~~L~l~~c~~l~~----i 228 (428)
+| .+..+++|+.|+|.+..+. .+..-+.+++. |+.|.+.++.......... .+++|+.|+++++.-... +
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred hh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 45 6778899999999998876 33333778888 9999999886432111111 124788888888762111 1
Q ss_pred E------EECCCcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhH-HH-hh---ccccCCcceeEEeeeeeee
Q 014227 229 E------ISASSLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRY-FI-GL---VVCCFPQLKTLDLECCNEV 293 (428)
Q Consensus 229 ~------i~ap~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~-~~-~l---~~~~~~~l~~L~l~~~~~~ 293 (428)
. ...++|+.|.+.+..+. + .+..+++|+.+++..+....+.. .+ .. . ..+++|+.|+++.+...
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF-KNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC-TTGGGCCEEECCSSCCC
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc-cccCCccEEECcCCcCC
Confidence 1 13457888887766442 1 12347788888886654432110 00 00 0 12237788888776544
Q ss_pred ecccC--CC--CCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 294 FMEFG--HW--ELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 294 ~~~~~--~~--~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
.+| .. .+++|++|+|..+.... +..-+..+++|+.|++..
T Consensus 502 --~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 502 --KLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp --BCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCS
T ss_pred --ccChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCC
Confidence 333 32 67778887774432221 223345677888877753
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.84 E-value=7.3e-06 Score=76.60 Aligned_cols=169 Identities=17% Similarity=0.086 Sum_probs=101.9
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEE-CCCcceEEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEIS-ASSLVSFRY 240 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~ 240 (428)
.++|+.|+|.+..+.+-.- ..+.++++|+.|.|.++...... ..-..+++|+.|+++++. +..+... .++|+.|.+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV 128 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred CCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence 4799999999987654211 13678999999999988643210 111246899999999886 3333211 278999998
Q ss_pred cceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCC
Q 014227 241 SGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPN 316 (428)
Q Consensus 241 ~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 316 (428)
.+.... ..+.++++|+.+++..+.....+.....+ ..+++|+.|.++.+... .++...+++|++|++..+...
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCccc--cCCccccccCCEEECCCCcCC
Confidence 876442 13678899999999776553211101223 67888888888766432 223223356666666332211
Q ss_pred CCchhHHHHHHHhCCCccEEEEEE
Q 014227 317 CESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 317 ~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
... ...+..+++|+.|++..
T Consensus 206 ~~~----~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 206 KVD----AASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EEC----TGGGTTCTTCCEEECCS
T ss_pred ccC----HHHhcCCCCCCEEECCC
Confidence 110 12234566666666653
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.81 E-value=1.2e-05 Score=69.07 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcce--E-E-EECCCcc
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKE--I-E-ISASSLV 236 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~--i-~-i~ap~L~ 236 (428)
..+++|+.|++.+..+.+-. -+..+++|+.|.+.+|. +..+..-..+++|+.|++.++.- .. . . -..|+|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCcc-CcccChhhcCCCCCC
Confidence 35789999999988776311 27788899999998883 33332223456777777777652 11 0 0 1235666
Q ss_pred eEEEcceeee----eecCCCCCeeEEEEeccC-cchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227 237 SFRYSGKDIK----LHVGNVPQLVDVVIHGAP-LFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT 311 (428)
Q Consensus 237 ~L~~~~~~~~----~~~~~~p~L~~l~l~~~~-~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 311 (428)
.|.+.+..+. -.+..+++|+.+++..+. ..++. .+ ..+++|+.|.++.+...... +...+++|++|++.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l-~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PL-KTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GG-GGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hh-cCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence 6666554321 124456666666665544 32221 12 55666666666555332211 34555666666663
Q ss_pred e
Q 014227 312 I 312 (428)
Q Consensus 312 ~ 312 (428)
.
T Consensus 190 ~ 190 (197)
T 4ezg_A 190 S 190 (197)
T ss_dssp B
T ss_pred C
Confidence 3
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.80 E-value=2.6e-06 Score=87.95 Aligned_cols=35 Identities=29% Similarity=0.130 Sum_probs=16.8
Q ss_pred ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT 311 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 311 (428)
..+++|+.|+++.+........ ...+++|+.|++.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 4555666666655433211111 3445566666663
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.80 E-value=3.9e-06 Score=78.54 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=41.3
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE----EECCCc
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE----ISASSL 235 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L 235 (428)
+.++++|++|+|.++.+.+-. ...+.++++|+.|.+.++... .+... ..++|++|++.++. +..+. -..++|
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~-~l~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPPN-LPSSLVELRIHDNR-IRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCC-SCCSS-CCTTCCEEECCSSC-CCCCCSGGGSSCSSC
T ss_pred hhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCc-cCccCHhHhCCCccC
Confidence 456777777777776543211 112566777777777766422 11111 11566666666654 22221 123556
Q ss_pred ceEEEcce
Q 014227 236 VSFRYSGK 243 (428)
Q Consensus 236 ~~L~~~~~ 243 (428)
+.|.+.+.
T Consensus 150 ~~L~l~~n 157 (332)
T 2ft3_A 150 NCIEMGGN 157 (332)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 66665544
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.79 E-value=4.9e-06 Score=77.86 Aligned_cols=102 Identities=22% Similarity=0.126 Sum_probs=70.3
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEE-CCCcceEEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEIS-ASSLVSFRY 240 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~ 240 (428)
+++|+.|+|.+..+.+-. ...+.++++|+.|.|.++...... ..-..+++|+.|++.++. +..+... .++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEEC
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence 579999999988754311 113688999999999998643210 112356899999999886 3333211 279999999
Q ss_pred cceeee----eecCCCCCeeEEEEeccCcc
Q 014227 241 SGKDIK----LHVGNVPQLVDVVIHGAPLF 266 (428)
Q Consensus 241 ~~~~~~----~~~~~~p~L~~l~l~~~~~~ 266 (428)
.+.... ..+.++++|+.+++......
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 877442 23678999999999776553
No 95
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.78 E-value=2.4e-05 Score=79.45 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=56.4
Q ss_pred CCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227 212 IPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN 291 (428)
Q Consensus 212 ~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~ 291 (428)
++|+.|+++++. +..+.-..++|+.|.+.+..+...-...++|+.+++..+... .+. ..+++|+.|+++.+.
T Consensus 181 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~------~lp-~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 181 SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT------SLP-VLPSELKELMVSGNR 252 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS------CCC-CCCTTCCEEECCSSC
T ss_pred CCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC------cCC-CCCCcCcEEECCCCC
Confidence 444444444443 222222234555555544433211122355666666544333 233 456677777776653
Q ss_pred eeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 292 EVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 292 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
+. .+|. .+++|++|+|..+... .+..-+..+|+|+.|++...
T Consensus 253 L~--~lp~-~~~~L~~L~Ls~N~L~-----~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 253 LT--SLPM-LPSGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CS--CCCC-CCTTCCEEECCSSCCC-----SCCGGGGGSCTTCEEECCSC
T ss_pred CC--cCCc-ccccCcEEeCCCCCCC-----cCCHHHhhccccCEEEecCC
Confidence 32 2222 5567777777443222 12233567788888887654
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.75 E-value=2.4e-06 Score=79.21 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=111.7
Q ss_pred cccceEEeeeEEeehHHHHHHHh--cCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcce------E-EEE
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIH--SCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMKE------I-EIS 231 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~~------i-~i~ 231 (428)
..++.|.+..+.+.+..+..+.. .++.|+.|.+.+|...+..... ..+++|+.|+++++.--.. . ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45677777777776655444332 3456788887777533221111 3346777777777652110 0 013
Q ss_pred CCCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHH--hhccccCCcceeEEeeeeeeeecc-cC---CCC
Q 014227 232 ASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFI--GLVVCCFPQLKTLDLECCNEVFME-FG---HWE 301 (428)
Q Consensus 232 ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~--~l~~~~~~~l~~L~l~~~~~~~~~-~~---~~~ 301 (428)
.++|++|++.+..+. -.+..+++|+.+++..+.......+. ... ..+++|+.|.++.+...... .+ ...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP-HKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT-TSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh-hcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 567777777665431 23456777887777666533211111 112 56777777777766443111 11 234
Q ss_pred CCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHH
Q 014227 302 LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAF 381 (428)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~ 381 (428)
+++|++|+|+.+.........+ .-+...|+|+.|+++... ... +|.....+|+.+.+.+-+-..-.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-------l~~-lp~~~~~~L~~L~Ls~N~l~~~~----- 288 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAG-------LEQ-VPKGLPAKLRVLDLSSNRLNRAP----- 288 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSC-------CCS-CCSCCCSCCSCEECCSCCCCSCC-----
T ss_pred CCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCC-------CCc-hhhhhcCCCCEEECCCCcCCCCc-----
Confidence 5677777774443222100000 001122677877775432 111 45555567777776642211100
Q ss_pred HHHhcccccccEEEec
Q 014227 382 FIFRNAKVLEKMIIKP 397 (428)
Q Consensus 382 ~ll~~a~~L~~l~i~~ 397 (428)
.+...+.|+.+.+..
T Consensus 289 -~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 289 -QPDELPEVDNLTLDG 303 (310)
T ss_dssp -CTTSCCCCSCEECSS
T ss_pred -hhhhCCCccEEECcC
Confidence 024557777776653
No 97
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.75 E-value=4.1e-06 Score=70.04 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=58.9
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE---EECCCcceEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE---ISASSLVSFR 239 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~ 239 (428)
.++|+.|+|.++.+.+..+...+..+++|+.|.+.+|.. ..+..-..+++|+.|+++++.--..+. -..|+|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 466777777766665333444456666777777766652 222222234566666666654211111 0135555555
Q ss_pred Ecceeee-----eecCCCCCeeEEEEeccCcchhhHH-HhhccccCCcceeEEeeee
Q 014227 240 YSGKDIK-----LHVGNVPQLVDVVIHGAPLFQVRYF-IGLVVCCFPQLKTLDLECC 290 (428)
Q Consensus 240 ~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~~~~~-~~l~~~~~~~l~~L~l~~~ 290 (428)
+.+..+. -.+..+++|+.+++..+........ ...+ ..+++|+.|+++.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF-KLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH-TTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH-HhCccCcEecCCCC
Confidence 5444221 1233455555555544433321110 0112 44555555555443
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.74 E-value=1.3e-05 Score=73.55 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=107.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE----ECCCc
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI----SASSL 235 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L 235 (428)
+.++++|+.|+|.+..+..-.. ...+++|+.|.+.++...........+++|+.|.++++. +..+.. ..++|
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL 126 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred hhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence 4578999999999887543211 267899999999987643221222356889999998875 333321 24789
Q ss_pred ceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227 236 VSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT 311 (428)
Q Consensus 236 ~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 311 (428)
+.|.+.+..+. + .+..+++|+.+++..+....+.. ..+ ..+++|+.|.++.+.............+|++|.|.
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH--HHh-cCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 99998877542 2 24578899999997665543211 223 67899999999887554221125556789999986
Q ss_pred eecCCC-CchhHHHHHHHhCC
Q 014227 312 ITEPNC-ESLLGLSFVLKACP 331 (428)
Q Consensus 312 ~~~~~~-~~~~~l~~lL~~~P 331 (428)
.+...+ .+..++...++.-+
T Consensus 204 ~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 204 GNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp SCCBCCSGGGHHHHHHHHHTG
T ss_pred CCCccCcCccHHHHHHHHhCc
Confidence 653332 34555666666544
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.71 E-value=9.6e-06 Score=83.65 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCC--cceE---EEE
Q 014227 158 HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYS--MKEI---EIS 231 (428)
Q Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~--l~~i---~i~ 231 (428)
..+..+++|+.|+|.+..+.+......+.++++|+.|.+.+|...... ..-..+++|+.|.+.++.. ...+ .-.
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 345567777777777765533211122566777777777776521100 0001245666666665531 0000 012
Q ss_pred CCCcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHH------HhhccccCCcceeEEeeeeeeeecccC---
Q 014227 232 ASSLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYF------IGLVVCCFPQLKTLDLECCNEVFMEFG--- 298 (428)
Q Consensus 232 ap~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~------~~l~~~~~~~l~~L~l~~~~~~~~~~~--- 298 (428)
.++|+.|++.+.... + .+.++++|+.+++..+....+... ...+ ..+++|+.|+++.+... .++
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~N~l~--~i~~~~ 555 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL-KGLSHLHILNLESNGFD--EIPVEV 555 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTT-TTCTTCCEEECCSSCCC--CCCTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhh-cCCCCCCEEECCCCCCC--CCCHHH
Confidence 356777776655331 1 245667777777765544321100 0112 56667777777665433 222
Q ss_pred CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
+..+++|+.|++..+.-.... ...+..+++|+.|+++.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTT
T ss_pred cccccCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCC
Confidence 445566666666333221111 12234556666666643
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.67 E-value=4.1e-05 Score=81.05 Aligned_cols=206 Identities=12% Similarity=0.015 Sum_probs=103.8
Q ss_pred CCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE------
Q 014227 157 GHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI------ 230 (428)
Q Consensus 157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i------ 230 (428)
|..+.++++|+.|+|.+..+..-. ...+.++++|+.|.|.++.... + . .+++|+.|.+.++. +..+.-
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~-i--~-~~~~L~~L~l~~N~-l~~l~~~~~~l~ 404 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTT-I--H-FIPSIPDIFLSGNK-LVTLPKINLTAN 404 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCC-C--S-SCCSCSEEEEESCC-CCCCCCCCTTCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCc-c--c-CCCCcchhccCCCC-cccccccccccc
Confidence 445678899999999887653311 1125678899999998875322 1 1 13677777777664 222211
Q ss_pred -------------------ECCCcceEEEcceeee-----eecCCCCCeeEEEEeccCcchhh--HH-HhhccccCCcce
Q 014227 231 -------------------SASSLVSFRYSGKDIK-----LHVGNVPQLVDVVIHGAPLFQVR--YF-IGLVVCCFPQLK 283 (428)
Q Consensus 231 -------------------~ap~L~~L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~~~--~~-~~l~~~~~~~l~ 283 (428)
..|+|+.|++.+.... .....+++|+.+++..+...... .. ...+ .++++|+
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~-~~l~~L~ 483 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF-EGLSHLQ 483 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS-SCBCCEE
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh-cCccccc
Confidence 2345555555443221 11223455555555443322100 00 0112 4556666
Q ss_pred eEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCc
Q 014227 284 TLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHL 362 (428)
Q Consensus 284 ~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L 362 (428)
.|+++.+........ ...+++|++|+|+.+.-.......+ .++|+.|+++... ... .++....+|
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~------~~~L~~L~Ls~N~-------l~~-~~~~~~~~L 549 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL------PANLEILDISRNQ-------LLA-PNPDVFVSL 549 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC------CSCCCEEEEEEEC-------CCC-CCSCCCSSC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh------hccccEEECCCCc-------CCC-CChhHhCCc
Confidence 666655533211111 4556777777775553322111111 1677777777642 111 222334578
Q ss_pred cEEEEee--eeeCCchHHHHHHH
Q 014227 363 KVVELHE--FRWLQIDPEIAFFI 383 (428)
Q Consensus 363 ~~v~i~~--f~g~~~e~~~~~~l 383 (428)
+.+.+.+ +.+...-..+..++
T Consensus 550 ~~l~l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 550 SVLDITHNKFICECELSTFINWL 572 (844)
T ss_dssp CEEEEEEECCCCSSSCCSHHHHH
T ss_pred CEEEecCCCcccccccHHHHHHH
Confidence 8888876 44433333444444
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.66 E-value=2.7e-05 Score=69.65 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=74.7
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEE----EECCCcceE
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIE----ISASSLVSF 238 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~L 238 (428)
++|+.|+|.+..+.+-.- ..+.++++|+.|.|.++....... .-..+++|+.|++.++. +..+. -..++|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 577777777766543211 125567777777777764322110 01134566677666654 22221 123566666
Q ss_pred EEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEee
Q 014227 239 RYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTIT 313 (428)
Q Consensus 239 ~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 313 (428)
.+.+..+. + .+..+++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|.|..+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH--HHc-CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 66554331 1 13456667777665554432111 112 5667777777766643322111 445667777777554
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.63 E-value=9.2e-05 Score=72.40 Aligned_cols=133 Identities=15% Similarity=0.077 Sum_probs=55.5
Q ss_pred cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEEEc
Q 014227 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYS 241 (428)
Q Consensus 164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~ 241 (428)
++|++|+|.++.+.+ +.. +.++++|+.|++.++...+ ++...++|+.|++.++. +..+. -..++|+.|.+.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~---lp~~~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKK---LPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcc---cCCCcccccEEECcCCc-CCcCccccCCCCCCEEECC
Confidence 455555555554432 111 4455555555555543211 11122455555555543 12111 113455555554
Q ss_pred ceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227 242 GKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT 311 (428)
Q Consensus 242 ~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 311 (428)
+....-.-...++|+.+++..+....+. . + ..+++|+.|+++.+.... ++ ..+++|++|++.
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp---~-~-~~l~~L~~L~l~~N~l~~--l~-~~~~~L~~L~l~ 265 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELP---E-L-QNLPFLTTIYADNNLLKT--LP-DLPPSLEALNVR 265 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCC---C-C-TTCTTCCEEECCSSCCSS--CC-SCCTTCCEEECC
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCccc---c-c-CCCCCCCEEECCCCcCCc--cc-ccccccCEEECC
Confidence 4432110011234555555443322211 1 1 455666666665543221 11 123566666663
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.55 E-value=4.3e-06 Score=68.33 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=34.0
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
+++|+.|++.++.+.+..+...+..+++|+.|.+.+|.... +..-..+++|+.|+++++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-CTTCCCCTTCCEEECCSSC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-chhhhcCCCCCEEECCCCc
Confidence 46777777777766533333445667777777777664322 2111234566666666554
No 104
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.55 E-value=1e-05 Score=76.94 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=85.4
Q ss_pred CcccceEEeeeEEeehHH---HHHHHh-cCCcccceeecccCCce--eeEEecCCCCcceEEeeecCCcceEEEECCCcc
Q 014227 163 IKSLRSLCLNALKVSGEV---LEFFIH-SCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYSMKEIEISASSLV 236 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~---l~~ll~-~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~ 236 (428)
.++|+.|+|.++.+.+.. +..++. .++.|+.|+|.+|.... ...+...+++|+.|++++|. +......+ |
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~--L- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKD--L- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHH--H-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHH--H-
Confidence 356777777777766543 333333 33577777777764211 00111122455666665554 11000000 0
Q ss_pred eEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecc---cC--CCCCCCccEEE
Q 014227 237 SFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFME---FG--HWELPKLLHLK 309 (428)
Q Consensus 237 ~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~L~~L~ 309 (428)
........++|+++++..+...+ ...+...+ ...++|++|+++.+...... +. +...++|++|+
T Consensus 147 --------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 147 --------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp --------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred --------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 00000234455556655554433 12222334 66778888888776543321 11 44556888888
Q ss_pred EEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 310 LTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 310 l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
|..+..+......+...+..+|+|+.|++...
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 85554333334456667778899999988654
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.52 E-value=5.2e-05 Score=76.34 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=109.8
Q ss_pred CCcccceEEeeeEEeehHHHHHHHh--cCCcccceeecccCCceeeEEe------cCC----------------------
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIH--SCPHLEHLYVANSSELLSLKVV------GSS---------------------- 211 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l~i~------~~~---------------------- 211 (428)
++++|+.|+|.++.+.+..+..+.. ..+.|+.|.+.+|...+.+.-. ..+
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 4566666777777776654443322 3458888888877532111000 000
Q ss_pred ----CCcceEEeeecCCcceEE--EECCCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCc
Q 014227 212 ----IPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQ 281 (428)
Q Consensus 212 ----~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~ 281 (428)
.+|+.|.+.++.. ..+. -..++|+.|++.+.... ..+.++++|+.+++..+....+......+ ..+++
T Consensus 327 ~~~~~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~ 404 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSS 404 (562)
T ss_dssp HHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTT
T ss_pred hhccCcceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-cCCCC
Confidence 2355555555431 1111 23467777777765332 23467788888888766554322221223 67788
Q ss_pred ceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhC-CCccEEEEEEecCCCCcccccccCCcC-
Q 014227 282 LKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKAC-PFLQKLVIKIWNNNRTIGEKRHQIPVH- 357 (428)
Q Consensus 282 l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~-P~L~~L~i~~~~~~~~~~~~~~~~p~~- 357 (428)
|+.|+++.+......-+ ...+++|++|++..+.... .+.... ++|+.|+++... ... +|..
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l~~~L~~L~L~~N~-------l~~-ip~~~ 469 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-------SVFRCLPPKVKVLDLHNNR-------IMS-IPKDV 469 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-------GGGSSCCTTCSEEECCSSC-------CCC-CCTTT
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-------chhhhhcCcCCEEECCCCc-------Ccc-cChhh
Confidence 88888876644321111 4456777777774432211 112233 577777776432 111 3322
Q ss_pred -ccCCccEEEEeeee--eCCchHHHHHHHHhcccccccEEEecC
Q 014227 358 -LHQHLKVVELHEFR--WLQIDPEIAFFIFRNAKVLEKMIIKPS 398 (428)
Q Consensus 358 -~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~ 398 (428)
-..+|+.+.+.+-+ ....+ .+.+.+.|+.+.+...
T Consensus 470 ~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 470 THLQALQELNVASNQLKSVPDG------VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp TSSCCCSEEECCSSCCCCCCTT------STTTCTTCCCEECCSC
T ss_pred cCCCCCCEEECCCCCCCCCCHH------HHhcCCCCCEEEecCC
Confidence 23556666665421 11111 2345666776666544
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.52 E-value=4e-05 Score=69.15 Aligned_cols=146 Identities=11% Similarity=0.013 Sum_probs=93.7
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY 240 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 240 (428)
..+++|+.|++.++.+.+-. -+..+++|+.|.|.++....... -..+++|+.|+++++. +..+ |
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l----~------- 101 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNL----N------- 101 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCC----T-------
T ss_pred hhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCc----C-------
Confidence 45789999999888765422 26778899999998875322111 2345677777777664 1111 0
Q ss_pred cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCch
Q 014227 241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESL 320 (428)
Q Consensus 241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 320 (428)
.+.. ++|+.+++..+...++. -+ ..+++|+.|+++.+...... +...+++|++|++..+.... .
T Consensus 102 -------~~~~-~~L~~L~L~~N~l~~~~----~l-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~--~ 165 (263)
T 1xeu_A 102 -------GIPS-ACLSRLFLDNNELRDTD----SL-IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN--T 165 (263)
T ss_dssp -------TCCC-SSCCEEECCSSCCSBSG----GG-TTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB--C
T ss_pred -------cccc-CcccEEEccCCccCCCh----hh-cCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc--h
Confidence 0111 55666666555444322 12 78999999999887554321 36778999999995443222 1
Q ss_pred hHHHHHHHhCCCccEEEEEEec
Q 014227 321 LGLSFVLKACPFLQKLVIKIWN 342 (428)
Q Consensus 321 ~~l~~lL~~~P~L~~L~i~~~~ 342 (428)
..+..+++|+.|++....
T Consensus 166 ----~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 ----GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ----TTSTTCCCCCEEEEEEEE
T ss_pred ----HHhccCCCCCEEeCCCCc
Confidence 446789999999999764
No 107
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.51 E-value=2.5e-05 Score=76.26 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=35.7
Q ss_pred ccccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227 19 MEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56 (428)
Q Consensus 19 ~~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 56 (428)
..|.++.||+|++.+||+||+.+++++++.|||+|+++
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999875
No 108
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.43 E-value=0.00029 Score=70.77 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
+.++++|++|+|.+..+.+-. ...+.++++|+.|+|.++... .+.-. .+++|++|+++++.
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFND 132 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSC
T ss_pred hccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCC
Confidence 344555555555555432210 011344555555555554421 11111 33455555555543
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.42 E-value=0.00018 Score=59.85 Aligned_cols=132 Identities=16% Similarity=0.108 Sum_probs=81.3
Q ss_pred cCCcccceeecccCCc-eee-EEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccC
Q 014227 187 SCPHLEHLYVANSSEL-LSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAP 264 (428)
Q Consensus 187 ~cp~Le~L~L~~~~~~-~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~ 264 (428)
..+.|+.|.+.+|... +.+ .....+++|+.|++.+|. +..+ -.+..+++|+.+++..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCc
Confidence 3477899998888632 111 111234667777776665 2221 123456777777776655
Q ss_pred cch-hhHHHhhccccCCcceeEEeeeeeeeeccc-C-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 265 LFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEF-G-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 265 ~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
... +... . ..+++|+.|+++.+....... . ...+++|++|++..+...... ......+..+|+|+.|++...
T Consensus 83 l~~~~~~~---~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 83 IFGGLDML---A-EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCSCCCHH---H-HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEET
T ss_pred CchHHHHH---H-hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCC
Confidence 543 2222 2 678999999998886554321 2 677889999999554322211 112347789999999999876
Q ss_pred c
Q 014227 342 N 342 (428)
Q Consensus 342 ~ 342 (428)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.32 E-value=8.7e-05 Score=60.39 Aligned_cols=128 Identities=17% Similarity=0.070 Sum_probs=76.6
Q ss_pred cCCcccceeecccCCc-eee-EEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccC
Q 014227 187 SCPHLEHLYVANSSEL-LSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAP 264 (428)
Q Consensus 187 ~cp~Le~L~L~~~~~~-~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~ 264 (428)
..+.|+.|.+.+|... +.+ .....+++|+.|++.+|. +..+ -.+..+++|+.+++..+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCc
Confidence 3467999999888643 121 111345667777776664 2221 123456677777776655
Q ss_pred cch-hhHHHhhccccCCcceeEEeeeeeeeeccc-C-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEE
Q 014227 265 LFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEF-G-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVI 338 (428)
Q Consensus 265 ~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i 338 (428)
..+ +...+ ..+++|+.|+++.+....... . ...+++|++|++..+..... .......+..+|+|+.|++
T Consensus 76 i~~~~~~~~----~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 76 VSGGLEVLA----EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCSCTHHHH----HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETT
T ss_pred ccchHHHHh----hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccC
Confidence 543 33222 678899999998876544321 2 67788999998844422111 1111357788999998875
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.32 E-value=0.00013 Score=71.39 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=96.9
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG 242 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~ 242 (428)
.++|++|++.++.+.. +.. +.++++|+.|.+.++...+ ++...++|+.|++.++. +..+.-..++|+.|++.+
T Consensus 214 ~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 214 PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS---CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc---ccccccccCEEECCCCc-ccccCcccCcCCEEECcC
Confidence 4689999999887652 222 6789999999998875432 22233789999998886 343333347888888877
Q ss_pred eeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhH
Q 014227 243 KDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLG 322 (428)
Q Consensus 243 ~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 322 (428)
....-.-.-.++|+.+++..+.... +. ...++|+.|+++.+.... +| ..+++|++|++..+.... ..
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~------i~-~~~~~L~~L~Ls~N~l~~--lp-~~~~~L~~L~L~~N~l~~--lp- 353 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRS------LC-DLPPSLEELNVSNNKLIE--LP-ALPPRLERLIASFNHLAE--VP- 353 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSE------EC-CCCTTCCEEECCSSCCSC--CC-CCCTTCCEEECCSSCCSC--CC-
T ss_pred CccCcccCcCCcCCEEECcCCcCCc------cc-CCcCcCCEEECCCCcccc--cc-ccCCcCCEEECCCCcccc--cc-
Confidence 6442211223678888886554432 21 223588888887764332 22 235788888885443221 21
Q ss_pred HHHHHHhCCCccEEEEEEe
Q 014227 323 LSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 323 l~~lL~~~P~L~~L~i~~~ 341 (428)
. .+++|+.|++...
T Consensus 354 --~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 354 --E---LPQNLKQLHVEYN 367 (454)
T ss_dssp --C---CCTTCCEEECCSS
T ss_pred --c---hhhhccEEECCCC
Confidence 1 3688888888754
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.31 E-value=6.9e-05 Score=70.61 Aligned_cols=171 Identities=16% Similarity=0.015 Sum_probs=78.4
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe--cCCCCcceEEeeecCCcceEE----EECCCcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV--GSSIPLKYLDIHYCYSMKEIE----ISASSLV 236 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~----i~ap~L~ 236 (428)
++++++|+|.+..+..-. ...+.++++|+.|+|.++...+.+... ..+++++.+.+..+..+..+. -..++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 356777777776543100 012566777777777777644432211 134555655555555555542 1246777
Q ss_pred eEEEcceeee----eecCCCCCeeEEEEeccCc-chhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227 237 SFRYSGKDIK----LHVGNVPQLVDVVIHGAPL-FQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT 311 (428)
Q Consensus 237 ~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~-~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 311 (428)
.|.+.+.... .......++..+.+..... ..+..- .+. .....++.|.++...............+|++|.+.
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~-~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFV-GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-SST-TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred cccccccccccCCchhhcccchhhhhhhcccccccccccc-chh-hcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 7777655331 1222344455555533211 110000 111 22245667777655433211112233445555542
Q ss_pred eecCCCCchhHH-HHHHHhCCCccEEEEEE
Q 014227 312 ITEPNCESLLGL-SFVLKACPFLQKLVIKI 340 (428)
Q Consensus 312 ~~~~~~~~~~~l-~~lL~~~P~L~~L~i~~ 340 (428)
.+ .. ...+ ...+..+++|+.|+++.
T Consensus 186 ~~--n~--l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 186 DN--NN--LEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp TC--TT--CCCCCTTTTTTEECCSEEECTT
T ss_pred cC--Cc--ccCCCHHHhccCcccchhhcCC
Confidence 11 11 1111 12345677777777754
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.30 E-value=0.00014 Score=70.58 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=35.3
Q ss_pred ccccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhh
Q 014227 19 MEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKY 55 (428)
Q Consensus 19 ~~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~ 55 (428)
..|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 4689999999999999999999999999999999986
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.30 E-value=6.9e-05 Score=72.57 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=34.9
Q ss_pred ccccCCCCcHH----HHHHHHhcCChHHHHHHHHhhHHHhh
Q 014227 19 MEDWFSKFPDD----ILVNIISRLTLKEAARTSVLSSRWKY 55 (428)
Q Consensus 19 ~~D~~s~LPd~----iL~~Ils~L~~~d~~~~s~vskrWr~ 55 (428)
..|.++.||+| |+.+||+||+.+++++++.|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 36889999999 99999999999999999999999985
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.27 E-value=4.9e-05 Score=63.93 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=35.7
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
..+++|+.|+|.++.+.. +..+...+|+|+.|.+.++.... +..-..+++|+.|+++++.
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCc
Confidence 356788888888776653 22233445578888887775322 2222245667777776664
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.22 E-value=0.00016 Score=72.56 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=13.5
Q ss_pred CCcceEEeeecCCcceEEEECCCcceEEEcce
Q 014227 212 IPLKYLDIHYCYSMKEIEISASSLVSFRYSGK 243 (428)
Q Consensus 212 ~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~ 243 (428)
++|+.|+++++. +..+.-..++|+.|.+.+.
T Consensus 140 ~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 140 ALLEYINADNNQ-LTMLPELPTSLEVLSVRNN 170 (571)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred ccccEEeCCCCc-cCcCCCcCCCcCEEECCCC
Confidence 455555555443 2222212345555555444
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.15 E-value=0.00046 Score=57.86 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=75.8
Q ss_pred hcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccCc
Q 014227 186 HSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPL 265 (428)
Q Consensus 186 ~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~ 265 (428)
..|+.|+.|.+.++.....-.+....++|+.|+++++. +..+ -.+..+++|+.+++..+..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~------------------~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL------------------DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE------------------CCCCCCSSCCEEECCSSCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc------------------cccccCCCCCEEECCCCcc
Confidence 35778888888887532211111122367777776664 2222 1234556666666655544
Q ss_pred chhhHHHhhccccCCcceeEEeeeeeeeeccc--CCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227 266 FQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF--GHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341 (428)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~ 341 (428)
..+.. .++ ..+++|+.|+++.+....... ....+++|++|.+..+..... ...-..++..+|+|+.|++...
T Consensus 77 ~~~~~--~~~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 77 CRIGE--GLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEECS--CHH-HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred cccCc--chh-hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 32110 122 678888888888775533221 255678889888855432211 1112335789999999998765
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.10 E-value=0.00013 Score=63.89 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=74.4
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS 241 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 241 (428)
.+.++.|+|.+..+..-.-...+.++++|+.|.|.++....... .-..+++|+.|+++++. +..+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~------------ 97 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQ------------ 97 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCC------------
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccC------------
Confidence 35677888887765432111235677888888887765221100 00123445555554443 11110
Q ss_pred ceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC-Cc
Q 014227 242 GKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC-ES 319 (428)
Q Consensus 242 ~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~ 319 (428)
+-.+.++++|+.+++..+....+.. ..+ ..+++|+.|+++.+......-. +..+++|++|+|..+...+ ..
T Consensus 98 ----~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 98 ----HKMFKGLESLKTLMLRSNRITCVGN--DSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ----GGGGTTCSSCCEEECTTSCCCCBCT--TSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ----HhHhcCCcCCCEEECCCCcCCeECH--hHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 1124456666666665544332100 112 6677888888876644332211 5567788888885543222 33
Q ss_pred hhHHHHHHHh
Q 014227 320 LLGLSFVLKA 329 (428)
Q Consensus 320 ~~~l~~lL~~ 329 (428)
..++...++.
T Consensus 171 l~~l~~~~~~ 180 (220)
T 2v70_A 171 LAWLGEWLRK 180 (220)
T ss_dssp GHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 4455555553
No 119
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.09 E-value=0.00016 Score=64.57 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=43.1
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVL 327 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL 327 (428)
+..+++|+.+++..+....+.. ..+ ..+++|+.|.++.+........ ...+++|++|+|..+...... ...+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 151 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPL--GVF-DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP----AGAF 151 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred hccCCcCCEEECCCCcccccCh--hHh-cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC----HHHc
Confidence 3455666666665443332110 122 5667777777766643321111 345667777777443222111 1234
Q ss_pred HhCCCccEEEEEEe
Q 014227 328 KACPFLQKLVIKIW 341 (428)
Q Consensus 328 ~~~P~L~~L~i~~~ 341 (428)
..+++|+.|++...
T Consensus 152 ~~l~~L~~L~L~~N 165 (251)
T 3m19_A 152 DKLTNLQTLSLSTN 165 (251)
T ss_dssp TTCTTCCEEECCSS
T ss_pred CcCcCCCEEECCCC
Confidence 56677777777543
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.09 E-value=0.00027 Score=62.17 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY 240 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 240 (428)
.++|+.|+|.+..+..-. ...+.++++|+.|.|.++.. ..+.. -..+++|+.|+++++. +..+.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~----------- 104 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLP----------- 104 (229)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred CCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccC-----------
Confidence 488999999988765421 12367788999999988763 22111 1234566666665553 21111
Q ss_pred cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC--
Q 014227 241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC-- 317 (428)
Q Consensus 241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-- 317 (428)
...+..+++|+.+++..+....+. .-+ ..+++|+.|+++.+........ +..+++|++|.|..+...+
T Consensus 105 -----~~~~~~l~~L~~L~Ls~N~l~~lp---~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 105 -----SAVFDRLVHLKELFMCCNKLTELP---RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCSCC---TTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred -----hhHhCcchhhCeEeccCCcccccC---ccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 011345666666666555443221 112 6788889998887754422212 5667888888885543222
Q ss_pred CchhHHHHHHHh
Q 014227 318 ESLLGLSFVLKA 329 (428)
Q Consensus 318 ~~~~~l~~lL~~ 329 (428)
.+...+..++..
T Consensus 176 ~~~~~l~~~~~~ 187 (229)
T 3e6j_A 176 RDIMYLRNWVAD 187 (229)
T ss_dssp GGGHHHHHHHHH
T ss_pred chhHHHHHHHHh
Confidence 234455555553
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.08 E-value=0.00019 Score=72.95 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=78.0
Q ss_pred CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHH-hhccccCCcceeEEeeeeeeeecccC-CCCCCCcc
Q 014227 233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFI-GLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLL 306 (428)
Q Consensus 233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~ 306 (428)
++++.+.+.+.... ..+..+++++.+++..+.... .+. +.+ ..+++|+.|+++.+......-. +..+++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~--~~~~~~~-~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--GEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccccccccccccccccchhhhhhhhhhccccc--ccCchhh-hhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 45555555443221 124456777777775443221 000 223 6788888888887754332211 56778888
Q ss_pred EEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEee--eeeCCchHHHHH
Q 014227 307 HLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHE--FRWLQIDPEIAF 381 (428)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~--f~g~~~e~~~~~ 381 (428)
+|.|+.+.-.... ...+..+++|+.|+++... .....|+. +.++|+.+.+.+ |.+.-.-..|..
T Consensus 522 ~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 522 VLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNH-------IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp EEECTTSCCCBCC----CGGGTTCTTCCEEECTTSC-------CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred EEECCCCcCCCCC----hhHHhCCCCCCEEECCCCc-------CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence 8888544322211 2235678899999886432 11112222 336899999986 666655556666
Q ss_pred HHHhc
Q 014227 382 FIFRN 386 (428)
Q Consensus 382 ~ll~~ 386 (428)
++-++
T Consensus 591 wl~~~ 595 (635)
T 4g8a_A 591 WIKDQ 595 (635)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 65443
No 122
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.02 E-value=2.6e-05 Score=74.17 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=77.1
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee--eEE----ecCCCCcceEEeeecCCcceEEEECCCcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS--LKV----VGSSIPLKYLDIHYCYSMKEIEISASSLV 236 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~--l~i----~~~~~~L~~L~l~~c~~l~~i~i~ap~L~ 236 (428)
.++|++|+|+++.+++..+..+...+++|+.|+|.+|..... -.+ ....++|+.|++.+|. +......
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~----- 173 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA----- 173 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH-----
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH-----
Confidence 468888888888887777777777777888888888753110 001 0123567777776664 1110000
Q ss_pred eEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeeccc---C--CCCCCCccEEE
Q 014227 237 SFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEF---G--HWELPKLLHLK 309 (428)
Q Consensus 237 ~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~---~--~~~~~~L~~L~ 309 (428)
.+.-.+...++|+.+++..+...+ ...+...+ ...++|+.|+++.+.+..... . ....++|++|+
T Consensus 174 -------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 174 -------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp -------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred -------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence 000011234556666665554443 11222344 667788888888775443221 1 34567899998
Q ss_pred EEee
Q 014227 310 LTIT 313 (428)
Q Consensus 310 l~~~ 313 (428)
|..+
T Consensus 246 Ls~N 249 (372)
T 3un9_A 246 LYFN 249 (372)
T ss_dssp CTTS
T ss_pred ccCC
Confidence 8544
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.92 E-value=0.00022 Score=61.52 Aligned_cols=128 Identities=18% Similarity=0.132 Sum_probs=68.7
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY 240 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 240 (428)
.++|+.|+|.+..+.+- ....+.++++|+.|.+.++... .+.- -..+++|+.|++.++. +..+.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~----------- 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQSLP----------- 92 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc-CCccC-----------
Confidence 56899999988876531 1223567888999988876432 1111 1133566666665553 11110
Q ss_pred cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227 241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTI 312 (428)
Q Consensus 241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 312 (428)
...+.++++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|++..
T Consensus 93 -----~~~~~~l~~L~~L~L~~N~l~~~~~--~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 93 -----NGVFDKLTQLKELALNTNQLQSLPD--GVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -----HhHhcCccCCCEEEcCCCcCcccCH--hHh-ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 0113445566666665443322110 122 5677788888776643321111 45567777777744
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.87 E-value=0.0012 Score=62.09 Aligned_cols=56 Identities=18% Similarity=0.095 Sum_probs=32.6
Q ss_pred ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
..+++|+.|+++.+... .+|...|.+|++|.+... .....+.. +..+++|+.+++.
T Consensus 199 ~~l~~L~~LdLs~N~l~--~lp~~~~~~L~~L~~l~~----~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 199 HGASGPVILDISRTRIH--SLPSYGLENLKKLRARST----YNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TTEECCSEEECTTSCCC--CCCSSSCTTCCEEECTTC----TTCCCCCC-TTTCCSCCEEECS
T ss_pred ccCcccchhhcCCCCcC--ccChhhhccchHhhhccC----CCcCcCCC-chhCcChhhCcCC
Confidence 66778888888766432 344555777877776221 11111111 4567778777774
No 125
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.86 E-value=0.00092 Score=67.81 Aligned_cols=36 Identities=31% Similarity=0.174 Sum_probs=16.5
Q ss_pred CCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227 162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS 199 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 199 (428)
.+.+|+.|++......... ..+..++.|+.+.+..+
T Consensus 395 ~~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp SCSCCCEEECCSCSEEEEC--SCCTTCTTCCEEECTTS
T ss_pred hhhhhhhhhcccccccccc--ccccccccccchhhhhc
Confidence 3455666665544322110 01344555665555544
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.85 E-value=0.0014 Score=57.07 Aligned_cols=148 Identities=14% Similarity=0.041 Sum_probs=79.4
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS 241 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 241 (428)
.++|+.|+|.+..+..-. ...+.++++|+.|.|.++...... ..-..+++|+.|+++++. +..+.
T Consensus 31 ~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------ 96 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELP------------ 96 (220)
T ss_dssp CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCC------------
T ss_pred CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccC------------
Confidence 368899998887654311 112567788888888877532110 001123455555555443 11110
Q ss_pred ceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC-Cc
Q 014227 242 GKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC-ES 319 (428)
Q Consensus 242 ~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~ 319 (428)
.-.+.++++|+.+++..+....+.. ..+ ..+++|+.|+++.+........ ...+++|++|+|..+...+ ..
T Consensus 97 ----~~~f~~l~~L~~L~L~~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 97 ----KSLFEGLFSLQLLLLNANKINCLRV--DAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ----HhHccCCCCCCEEECCCCCCCEeCH--HHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 0113456667777766554432110 122 6778888888877754433222 5567788888885543222 34
Q ss_pred hhHHHHHHHhCC
Q 014227 320 LLGLSFVLKACP 331 (428)
Q Consensus 320 ~~~l~~lL~~~P 331 (428)
..++...++.-+
T Consensus 170 l~~l~~~l~~~~ 181 (220)
T 2v9t_B 170 LKWLADYLHTNP 181 (220)
T ss_dssp GHHHHHHHHHCC
T ss_pred cHHHHHHHHhCC
Confidence 556666666543
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.68 E-value=7.2e-05 Score=64.24 Aligned_cols=61 Identities=21% Similarity=-0.011 Sum_probs=36.3
Q ss_pred ccCCcceeEEeeeeeeeeccc-C-CCCCCCccEEEEEeecCCCC--c----hhHHHHHHHhCCCccEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEF-G-HWELPKLLHLKLTITEPNCE--S----LLGLSFVLKACPFLQKLV 337 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~--~----~~~l~~lL~~~P~L~~L~ 337 (428)
..+++|+.|.++.+....... . ...+++|++|.+..+..... . ......++..+|+|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 566778888887765443221 2 55677888888844321110 0 112345578899999886
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.56 E-value=3.2e-05 Score=66.47 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=33.4
Q ss_pred CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227 161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 223 (428)
..+++|++|+|.+..+.+ +. .+.++++|+.|.+.++...........+++|+.|+++++.
T Consensus 45 ~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 346777777777777654 22 3566777777777766422110111122456666666553
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.46 E-value=0.0052 Score=56.98 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=44.3
Q ss_pred CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeee-cccCCCCCCCcc-EEEEEeecCCCCchhHHHHHHHh
Q 014227 252 VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVF-MEFGHWELPKLL-HLKLTITEPNCESLLGLSFVLKA 329 (428)
Q Consensus 252 ~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~lL~~ 329 (428)
+++|+.+.+.......++. ..+ .+|.+|+.|.+... ... ....+..+.+|+ .|.+.. .-.... ...+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~--~aF-~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~--~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD--FTF-AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA---SVTAIE--FGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECT--TTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT---TCCEEC--TTTTTT
T ss_pred cCCCeEEECCCCCcceecH--hhh-hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc---cceEEc--hhhhhC
Confidence 6778888776543332110 122 78888888888654 211 111156667777 777722 111111 233578
Q ss_pred CCCccEEEEE
Q 014227 330 CPFLQKLVIK 339 (428)
Q Consensus 330 ~P~L~~L~i~ 339 (428)
|++|+.|.+.
T Consensus 296 c~~L~~l~l~ 305 (329)
T 3sb4_A 296 CDNLRYVLAT 305 (329)
T ss_dssp CTTEEEEEEC
T ss_pred CccCCEEEeC
Confidence 8999998874
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.42 E-value=0.0021 Score=55.94 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=15.2
Q ss_pred ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT 311 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 311 (428)
..+++|+.|.++.+........ +..+++|++|+|.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 4455555555554432221111 3344455555553
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.30 E-value=0.00078 Score=58.04 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=41.2
Q ss_pred CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecC
Q 014227 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~ 223 (428)
+..+++|++|+|.+..+.+- ....+.++++|+.|.|.++....... .-..+++|+.|++.++.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence 45789999999998876531 12235788999999999875322110 01234677777777664
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.22 E-value=0.0015 Score=65.56 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=61.6
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG 242 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~ 242 (428)
+++|++|+|++..+.. +. ..+++|+.|.|.++.... +.- -..+|+.|+++++. +..+.-..++|+.|++.+
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE--LPASLKHLDVDNNQ-LTMLPELPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch--hhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence 4677777777776542 11 446777777777764322 111 11377777777665 222222456777777766
Q ss_pred eeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227 243 KDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN 291 (428)
Q Consensus 243 ~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~ 291 (428)
..+...-..+++|+.+++..+....+.. + . ++|+.|+++.+.
T Consensus 150 N~l~~lp~~l~~L~~L~Ls~N~L~~lp~----l-~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 150 NQLTMLPELPTSLEVLSVRNNQLTFLPE----L-P--ESLEALDVSTNL 191 (571)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSCCCC----C-C--TTCCEEECCSSC
T ss_pred CccCcCCCcCCCcCEEECCCCCCCCcch----h-h--CCCCEEECcCCC
Confidence 6442111145677777776554432111 1 2 566666666553
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.22 E-value=0.0016 Score=61.35 Aligned_cols=126 Identities=16% Similarity=0.137 Sum_probs=66.2
Q ss_pred CcccceEEeeeEEeehHHHHHHHh-cCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE----ECCCc
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIH-SCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI----SASSL 235 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L 235 (428)
.+.++.|+|++..+.+-.-. .+. ++++|+.|.|.++.... +.- -..+++|+.|+++++. +..+.- ..++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp CTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 35577777777665431111 133 67777777777664321 110 1234667777777664 333321 23666
Q ss_pred ceEEEcceeee----eecCCCCCeeEEEEeccCcchhhH-HHhhccccCCcceeEEeeeeee
Q 014227 236 VSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRY-FIGLVVCCFPQLKTLDLECCNE 292 (428)
Q Consensus 236 ~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~-~~~l~~~~~~~l~~L~l~~~~~ 292 (428)
+.|.+.+..+. ..+.++++|+.+++..+....+.. .+.-. ..+++|+.|+++.+.+
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSSCC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-ccCCcCCEEECCCCCC
Confidence 77776655432 135567777777776655443111 11001 3467777777776643
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.17 E-value=0.0034 Score=54.94 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=75.9
Q ss_pred CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
++|+.|.+.+..+. -.+.++++|+.+++..+....+.. ..+ ..+++|+.|+++.+.+....-. +..+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV--GVF-DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh--hhc-ccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 44555555444321 124566777777776554432110 222 6778888888877754322111 456788888
Q ss_pred EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEee--eeeCCchHH-HHH
Q 014227 308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHE--FRWLQIDPE-IAF 381 (428)
Q Consensus 308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~--f~g~~~e~~-~~~ 381 (428)
|.|..+.... +..-+..+++|+.|++.... ... +|.. ...+|+.+.+.+ +.+...++. +..
T Consensus 117 L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~-------l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~ 183 (229)
T 3e6j_A 117 LFMCCNKLTE-----LPRGIERLTHLTHLALDQNQ-------LKS-IPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRN 183 (229)
T ss_dssp EECCSSCCCS-----CCTTGGGCTTCSEEECCSSC-------CCC-CCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHH
T ss_pred EeccCCcccc-----cCcccccCCCCCEEECCCCc-------CCc-cCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHH
Confidence 8885443221 22334778888888886532 111 2211 246777777765 333332333 344
Q ss_pred HHHhccccc
Q 014227 382 FIFRNAKVL 390 (428)
Q Consensus 382 ~ll~~a~~L 390 (428)
++..+...+
T Consensus 184 ~~~~~~~~~ 192 (229)
T 3e6j_A 184 WVADHTSIA 192 (229)
T ss_dssp HHHHCGGGE
T ss_pred HHHhCcccc
Confidence 554555544
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.011 Score=54.88 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=37.5
Q ss_pred ccCCcceeEEeeeeeeeeccc-CCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCcc-EEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEF-GHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQ-KLVIK 339 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~-~L~i~ 339 (428)
..+++|+.|++..+......- .+..+.+|++|.|..+ -.... ...+..|++|+ .+.+.
T Consensus 223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---i~~I~--~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---LKTIG--QRVFSNCGRLAGTLELP 282 (329)
T ss_dssp HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---CCEEC--TTTTTTCTTCCEEEEEC
T ss_pred HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---cceeh--HHHhhCChhccEEEEEc
Confidence 458999999997653322211 2677889999988332 11111 23357999999 99985
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.92 E-value=0.0069 Score=57.00 Aligned_cols=145 Identities=16% Similarity=0.084 Sum_probs=82.6
Q ss_pred CcccceeecccCCceeeE---EecCCCCcceEEeeecCCcceEEE----ECCCcceEEEcceeee-e---ecCCCCCeeE
Q 014227 189 PHLEHLYVANSSELLSLK---VVGSSIPLKYLDIHYCYSMKEIEI----SASSLVSFRYSGKDIK-L---HVGNVPQLVD 257 (428)
Q Consensus 189 p~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L~~~~~~~~-~---~~~~~p~L~~ 257 (428)
+.++.|.|.++.. ..+. +...+++|+.|.+.++. +..+.. ..++|+.|++.+..+. + .+.++++|+.
T Consensus 39 ~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 4588888888753 2221 11145788888888775 444431 2377888888776442 1 3556788888
Q ss_pred EEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-C---CCCCCccEEEEEeecCCCCchhHHHHHHHhCCC-
Q 014227 258 VVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-H---WELPKLLHLKLTITEPNCESLLGLSFVLKACPF- 332 (428)
Q Consensus 258 l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~- 332 (428)
+++..+....+.. ..+ ..+++|+.|.++.+.+...... . ..+++|++|+|..+...... ...+..+|+
T Consensus 117 L~L~~N~i~~~~~--~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~ 189 (361)
T 2xot_A 117 LLLYNNHIVVVDR--NAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAW 189 (361)
T ss_dssp EECCSSCCCEECT--TTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHH
T ss_pred EECCCCcccEECH--HHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHh
Confidence 8887665443110 122 6778888888877644321111 1 45678888887554332222 234455665
Q ss_pred -ccEEEEEEec
Q 014227 333 -LQKLVIKIWN 342 (428)
Q Consensus 333 -L~~L~i~~~~ 342 (428)
++.|.+...+
T Consensus 190 ~l~~l~l~~N~ 200 (361)
T 2xot_A 190 VKNGLYLHNNP 200 (361)
T ss_dssp HHTTEECCSSC
T ss_pred hcceEEecCCC
Confidence 3667776543
No 137
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.90 E-value=0.0034 Score=52.99 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=29.0
Q ss_pred ccCCcceeEEeeeeeeeeccc---C--CCCCCCccEEEE--EeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEF---G--HWELPKLLHLKL--TITEPNCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~---~--~~~~~~L~~L~l--~~~~~~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
...++|++|+++.+.+..... . ....++|++|+| ..+..+......+...++.+++|+.|++.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 444556666665543322111 1 334445566555 32322222233345555555666666554
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.87 E-value=0.0072 Score=56.91 Aligned_cols=76 Identities=17% Similarity=-0.019 Sum_probs=40.0
Q ss_pred CCCCeeEEEEeccCcchhh-HHHhhccccCCcceeEEeeeeeeeecc---cC--CCCCCCccEEEEEeecCCCCchhHHH
Q 014227 251 NVPQLVDVVIHGAPLFQVR-YFIGLVVCCFPQLKTLDLECCNEVFME---FG--HWELPKLLHLKLTITEPNCESLLGLS 324 (428)
Q Consensus 251 ~~p~L~~l~l~~~~~~~~~-~~~~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~L~~L~l~~~~~~~~~~~~l~ 324 (428)
.+|+|+.+.+..+...+.. ..+.-. ..+++|++|+++.+...... +. .+.+++|++|+|..+. .+..++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~---i~d~~~~ 325 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY---LSDEMKK 325 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB---CCHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc---CCHHHHH
Confidence 3566666666544433211 111001 24678888888776544321 11 3567899999985443 3344444
Q ss_pred HHHHhC
Q 014227 325 FVLKAC 330 (428)
Q Consensus 325 ~lL~~~ 330 (428)
.+-+.+
T Consensus 326 ~l~~al 331 (362)
T 2ra8_A 326 ELQKSL 331 (362)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 444444
No 139
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.83 E-value=0.0071 Score=52.56 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=47.3
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVL 327 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL 327 (428)
+.++++|+.+++..+....+.. ..+ ..+++|+.|.++.+.+....-. +..+++|++|+|..+...... ...+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~ 149 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQH--KMF-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA----PGAF 149 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCG--GGG-TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC----TTTT
T ss_pred hCCCCCCCEEECCCCccCccCH--hHh-cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC----HHHh
Confidence 4566677777776554433111 122 6777888888876644332111 556677777777443222111 2234
Q ss_pred HhCCCccEEEEEEe
Q 014227 328 KACPFLQKLVIKIW 341 (428)
Q Consensus 328 ~~~P~L~~L~i~~~ 341 (428)
..+++|+.|++...
T Consensus 150 ~~l~~L~~L~L~~N 163 (220)
T 2v70_A 150 DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCCEEECCSC
T ss_pred cCCCCCCEEEecCc
Confidence 56777777777654
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.66 E-value=0.0052 Score=61.66 Aligned_cols=147 Identities=14% Similarity=0.007 Sum_probs=75.8
Q ss_pred HHHHhcCCcccceeecccCCceee-----------EEecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceee---
Q 014227 182 EFFIHSCPHLEHLYVANSSELLSL-----------KVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDI--- 245 (428)
Q Consensus 182 ~~ll~~cp~Le~L~L~~~~~~~~l-----------~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~--- 245 (428)
...+.++++|+.|....+.....+ .+.. ..|+.|+++++. +..+. -..++|+.|++++..+
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~l 478 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRAL 478 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCC
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCC-CCCCcCccccccCcEeecCccccccc
Confidence 345667888888883222111100 1111 457788887775 33221 1235677777766533
Q ss_pred eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHH
Q 014227 246 KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGL 323 (428)
Q Consensus 246 ~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l 323 (428)
+-.+.++++|+.+++..+....+. . + ..+++|+.|+++.+.......| ...+++|+.|+|..+..... ...+
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~lp-~---l-~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~ 552 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALENVD-G---V-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQ 552 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCG-G---G-TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCT
T ss_pred chhhhcCCCCCEEECCCCCCCCCc-c---c-CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHH
Confidence 224556667777777655444332 1 1 5666777777766644333212 55566677776643321110 1122
Q ss_pred HHHHHhCCCccEEE
Q 014227 324 SFVLKACPFLQKLV 337 (428)
Q Consensus 324 ~~lL~~~P~L~~L~ 337 (428)
..++..+|+|+.|.
T Consensus 553 ~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 553 ERLAEMLPSVSSIL 566 (567)
T ss_dssp THHHHHCTTCSEEE
T ss_pred HHHHHHCcccCccC
Confidence 34455667776664
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.24 E-value=0.0037 Score=62.76 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=53.5
Q ss_pred ccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEccee
Q 014227 165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKD 244 (428)
Q Consensus 165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~ 244 (428)
.|+.|+|++..+.+ +.. +.++++|+.|.|.++........-..+++|+.|+++++. +..+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l---------------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV---------------- 501 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC----------------
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC----------------
Confidence 57778877776543 223 667778888888776532110111134566666665553 1111
Q ss_pred eeeecCCCCCeeEEEEeccCcchh--hHHHhhccccCCcceeEEeeeee
Q 014227 245 IKLHVGNVPQLVDVVIHGAPLFQV--RYFIGLVVCCFPQLKTLDLECCN 291 (428)
Q Consensus 245 ~~~~~~~~p~L~~l~l~~~~~~~~--~~~~~l~~~~~~~l~~L~l~~~~ 291 (428)
+ .+.++++|+.+++..+...++ . ..+ ..+++|+.|+++++.
T Consensus 502 -p-~l~~l~~L~~L~Ls~N~l~~~~~p---~~l-~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 502 -D-GVANLPRLQELLLCNNRLQQSAAI---QPL-VSCPRLVLLNLQGNS 544 (567)
T ss_dssp -G-GGTTCSSCCEEECCSSCCCSSSTT---GGG-GGCTTCCEEECTTSG
T ss_pred -c-ccCCCCCCcEEECCCCCCCCCCCc---HHH-hcCCCCCEEEecCCc
Confidence 1 244555566666554443321 1 112 566777777776653
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.02 E-value=0.0094 Score=50.49 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=34.3
Q ss_pred CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecC
Q 014227 163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCY 223 (428)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~ 223 (428)
+++|+.|+|.+..+..-.-..++.++++|+.|.|.++...+.. ..-..+++|+.|+++++.
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 3478888888776543211123567788888888776532210 011134566666666654
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.51 E-value=0.025 Score=47.89 Aligned_cols=53 Identities=21% Similarity=0.116 Sum_probs=30.1
Q ss_pred ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCC-CCchhHHHHHHHh
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPN-CESLLGLSFVLKA 329 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~l~~lL~~ 329 (428)
..+++|+.|.++...+...... +..+++|++|+|..+... +....++...++.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 5677777777776644322211 455678888888554322 1344555555554
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.51 E-value=0.038 Score=52.76 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=73.4
Q ss_pred ccceEEeeeE--EeehHHHHHHHhcCCcccceeecccCCceeeEEec-CCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227 165 SLRSLCLNAL--KVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVG-SSIPLKYLDIHYCYSMKEIEI----SASSLVS 237 (428)
Q Consensus 165 ~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~-~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 237 (428)
+|+.+.|..- .+++. .+.+|++|+.+.+..... ..+.-.+ .+.+|+.+.+.. .+..+.- .+++|+.
T Consensus 158 ~L~~i~lp~~l~~I~~~----aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKED----IFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCTTCCEECSS----TTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCC
T ss_pred CceEEEeCCCccEehHH----HhhCcccCCeeecCCCcc-eEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCE
Confidence 5777766541 13332 256788888887764321 1110000 124555555531 1222221 2355665
Q ss_pred EEEcceeeee---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeee------ecccCCCCCCCccEE
Q 014227 238 FRYSGKDIKL---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEV------FMEFGHWELPKLLHL 308 (428)
Q Consensus 238 L~~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~------~~~~~~~~~~~L~~L 308 (428)
+.+.+....+ .+.+ .+|+.+.+... ...++. ..+ ..|++|+.+.+...... .....+..+++|+.+
T Consensus 231 l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~--~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 231 IEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIAS--RAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp EECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECT--TTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred EecCCCccCcccccccc-CCccEEEeCCC-ccEECh--hHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 5554321111 1223 46777766321 111110 122 77888888888654322 111115666777877
Q ss_pred EEEeecCCCCchhHHHHHHHhCCCccEEEE
Q 014227 309 KLTITEPNCESLLGLSFVLKACPFLQKLVI 338 (428)
Q Consensus 309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i 338 (428)
.|... -.... ...+..|++|+.+.|
T Consensus 306 ~l~~~---i~~I~--~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 306 EIPES---IRILG--QGLLGGNRKVTQLTI 330 (401)
T ss_dssp CCCTT---CCEEC--TTTTTTCCSCCEEEE
T ss_pred EeCCc---eEEEh--hhhhcCCCCccEEEE
Confidence 76211 10110 123467888888887
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.28 E-value=0.025 Score=46.96 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.4
Q ss_pred CcceEEeeec
Q 014227 213 PLKYLDIHYC 222 (428)
Q Consensus 213 ~L~~L~l~~c 222 (428)
+|+.|++.++
T Consensus 29 ~l~~L~l~~n 38 (177)
T 2o6r_A 29 SATRLELESN 38 (177)
T ss_dssp TCSEEECCSS
T ss_pred CCcEEEeCCC
Confidence 4444444443
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.26 E-value=0.02 Score=48.55 Aligned_cols=84 Identities=17% Similarity=0.041 Sum_probs=36.6
Q ss_pred CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHH
Q 014227 250 GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLK 328 (428)
Q Consensus 250 ~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~ 328 (428)
.++++|+.+++..+....+.. ..+ ..+++|+.|.++.......... +..+++|++|+|..+...... ...+.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~i~~--~~f-~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~ 123 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRISTLSN--QSF-SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP----EGAFN 123 (193)
T ss_dssp GGCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTT
T ss_pred hcccCCCEEECCCCcCCEeCH--hHc-cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC----hhhhh
Confidence 344555555554443332110 112 5556666666655533222111 444556666666433221111 11234
Q ss_pred hCCCccEEEEEE
Q 014227 329 ACPFLQKLVIKI 340 (428)
Q Consensus 329 ~~P~L~~L~i~~ 340 (428)
.+++|+.|++..
T Consensus 124 ~l~~L~~L~L~~ 135 (193)
T 2wfh_A 124 DLSALSHLAIGA 135 (193)
T ss_dssp TCTTCCEEECCS
T ss_pred cCccccEEEeCC
Confidence 455666665543
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.11 E-value=0.0062 Score=63.06 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=66.0
Q ss_pred CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEE---EECCC
Q 014227 159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIE---ISASS 234 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~---i~ap~ 234 (428)
.+..+++|+.|+|.+..+.. +..-+.++++|+.|.|.++... .+. --..+++|+.|+++++. +..+. -..++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 35568889999988887542 1112447888999999887543 111 01245788888888776 33331 12467
Q ss_pred cceEEEcceee---eeecCCCCCeeEEEEeccCcch
Q 014227 235 LVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQ 267 (428)
Q Consensus 235 L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~ 267 (428)
|+.|.+.+..+ +..+.++++|+.+++..+....
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 88888776633 3346778888888887766553
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.97 E-value=0.011 Score=61.14 Aligned_cols=60 Identities=13% Similarity=-0.106 Sum_probs=31.0
Q ss_pred HHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE---EECCCcceEEEcce
Q 014227 183 FFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE---ISASSLVSFRYSGK 243 (428)
Q Consensus 183 ~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~ 243 (428)
..+..++.|+.|.|.++.....-.-...+++|+.|+++++. +..+. -..++|+.|++++.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC
Confidence 44677888999999887643110001134677777777765 22221 12355555555544
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.97 E-value=0.049 Score=45.96 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEee
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTIT 313 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 313 (428)
+.++++|+.+++.......+.. ..+ ..+++|+.|+++........-. ...+++|++|+|..+
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISN--KMF-LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECS--SSS-TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCcccCCEEECCCCcCCccCH--HHh-cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 4456666666665544332110 112 5677788888776644332211 556677888877554
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.77 E-value=0.018 Score=48.52 Aligned_cols=124 Identities=12% Similarity=-0.020 Sum_probs=65.8
Q ss_pred hhccccCCcceeEEeeee-eeeecccC-----CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCC
Q 014227 273 GLVVCCFPQLKTLDLECC-NEVFMEFG-----HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRT 346 (428)
Q Consensus 273 ~l~~~~~~~l~~L~l~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~ 346 (428)
.++ ...++|++|+++.+ ........ ....++|++|+|..+..++.....+...++..++|+.|++....-. .
T Consensus 30 ~~l-~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~ 107 (185)
T 1io0_A 30 RIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS-G 107 (185)
T ss_dssp HHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-H
T ss_pred HHH-hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC-H
Confidence 344 66777777777665 44332111 4455677777775443333344456666777788888887643210 0
Q ss_pred cccccccCCcC--ccCCccEEEE--eeeeeCCchHHHHHHHHhcccccccEEEecCch
Q 014227 347 IGEKRHQIPVH--LHQHLKVVEL--HEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSS 400 (428)
Q Consensus 347 ~~~~~~~~p~~--~~~~L~~v~i--~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~ 400 (428)
.+- .. +.+. ...+|+.+.+ .+-.-.......+.-.+++.+.|+++.+....-
T Consensus 108 ~g~-~~-l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGI-LA-LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHH-HH-HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHH-HH-HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 000 00 0111 1356788877 432222222233334556678899998876543
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=93.68 E-value=0.058 Score=44.65 Aligned_cols=60 Identities=22% Similarity=0.117 Sum_probs=25.5
Q ss_pred ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI 340 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~ 340 (428)
..+++|+.|+++.+........ ...+++|++|++..+...... ...+..+++|+.|++..
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP----NGVFDKLTQLKELALDT 109 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC----HHHhhCCcccCEEECcC
Confidence 4455555555554432211111 344555555555333211110 11234556666666543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.58 E-value=0.087 Score=43.42 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
++|+.|.+.+..+. -.+.++++|+.+++..+....+.. ..+ ..+++|+.|.++...+...... +..+++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA--GVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh--hhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 45555555544331 124567777777776554433111 222 6778888888877754432222 556778888
Q ss_pred EEEEeecCCC--CchhHHHHHHHhCCCc
Q 014227 308 LKLTITEPNC--ESLLGLSFVLKACPFL 333 (428)
Q Consensus 308 L~l~~~~~~~--~~~~~l~~lL~~~P~L 333 (428)
|.|..+.... .+...+...++..+.+
T Consensus 107 L~L~~N~~~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 107 IWLLNNPWDCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp EECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred EEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence 8886553322 2355566666665544
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=91.38 E-value=0.27 Score=40.56 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227 233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH 307 (428)
Q Consensus 233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~ 307 (428)
++|+.|.+.+..+. -.+.++++|+.+++..+....+.. ..+ ..+++|+.|+++...+...... +..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT--GVF-DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh--hHh-CCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 45666665554331 124566777777776554443110 122 6678888888877644422211 556778888
Q ss_pred EEEEeecCCC--CchhHHHHHHHhCC
Q 014227 308 LKLTITEPNC--ESLLGLSFVLKACP 331 (428)
Q Consensus 308 L~l~~~~~~~--~~~~~l~~lL~~~P 331 (428)
|.|..+.... .+...+...++.-+
T Consensus 110 L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 110 IYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp EECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred EEeCCCCcccccccHHHHHHHHHhcc
Confidence 8875553322 23445555555433
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.38 E-value=0.16 Score=48.06 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=48.0
Q ss_pred ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-
Q 014227 277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP- 355 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p- 355 (428)
..+.+|+.+.+...-..........+.+|+++.|.. .. .... ..-+..|.+|+++.|... ... +.
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v-~~I~--~~aF~~c~~L~~i~lp~~--------l~~-I~~ 359 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LV-EEIG--KRSFRGCTSLSNINFPLS--------LRK-IGA 359 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TC-CEEC--TTTTTTCTTCCEECCCTT--------CCE-ECT
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCC--cc-cEEh--HHhccCCCCCCEEEECcc--------ccE-ehH
Confidence 677888888874331111111255667788777621 10 0110 122467888888876311 111 11
Q ss_pred cC--ccCCccEEEEeeeeeCCchHHHHHHHHhcccccccE
Q 014227 356 VH--LHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKM 393 (428)
Q Consensus 356 ~~--~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l 393 (428)
.+ -+.+|+.|.+.. . +...++-..+++.|+.+
T Consensus 360 ~aF~~C~~L~~i~lp~---~---~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 NAFQGCINLKKVELPK---R---LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTBTTCTTCCEEEEEG---G---GGGGGGGBCTTCEEEEE
T ss_pred HHhhCCCCCCEEEECC---C---CEEhhheecCCCCCcEE
Confidence 11 136788887742 1 12223335667777654
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=90.30 E-value=0.15 Score=41.94 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=47.3
Q ss_pred CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhC
Q 014227 252 VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKAC 330 (428)
Q Consensus 252 ~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~ 330 (428)
.++|+.+++.......+.. ..+ ..+++|+.|+++...+....-. +..+++|++|+|..+...... ...+..+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEP--GVF-DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP----RGAFDNL 101 (170)
T ss_dssp CTTCSEEECCSSCCCCCCT--TTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTC
T ss_pred CCCCcEEEcCCCcCCccCh--hhh-cCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC----HHHhcCC
Confidence 3567777776655443210 122 6778888888877654322111 456677888877544322211 1234667
Q ss_pred CCccEEEEEEec
Q 014227 331 PFLQKLVIKIWN 342 (428)
Q Consensus 331 P~L~~L~i~~~~ 342 (428)
++|+.|++...+
T Consensus 102 ~~L~~L~L~~N~ 113 (170)
T 3g39_A 102 KSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 777777776543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.26 E-value=0.13 Score=46.01 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-ccC-CCCCCCccEEEEEeecCCC--C-chhHHHH
Q 014227 251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EFG-HWELPKLLHLKLTITEPNC--E-SLLGLSF 325 (428)
Q Consensus 251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~--~-~~~~l~~ 325 (428)
++|+|+.+++..+...++..+-.++ ..+++|+.|+|+...+... .+. ...+ +|++|.|..+.... . .......
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3455555555444433322111233 6889999999987755433 222 3333 89999885442111 0 1123456
Q ss_pred HHHhCCCccEEEE
Q 014227 326 VLKACPFLQKLVI 338 (428)
Q Consensus 326 lL~~~P~L~~L~i 338 (428)
++..+|+|+.|+=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 8899999998863
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=89.35 E-value=0.2 Score=41.36 Aligned_cols=82 Identities=11% Similarity=0.070 Sum_probs=47.3
Q ss_pred CCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCC
Q 014227 253 PQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACP 331 (428)
Q Consensus 253 p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P 331 (428)
+.|+.+++.......+.. ..+ ..+++|+.|+++...+...... +..+++|++|+|..+...... ...+..++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP--GVF-DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP----RGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCT
T ss_pred CCCcEEEeCCCCccccCH--HHh-cCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC----HHHhcccc
Confidence 677888876655443110 122 6778888888877744332111 356678888877544322211 12356677
Q ss_pred CccEEEEEEe
Q 014227 332 FLQKLVIKIW 341 (428)
Q Consensus 332 ~L~~L~i~~~ 341 (428)
+|+.|++...
T Consensus 106 ~L~~L~L~~N 115 (174)
T 2r9u_A 106 SLTHIYLYNN 115 (174)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEEeCCC
Confidence 8888877654
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.70 E-value=0.48 Score=44.99 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=6.6
Q ss_pred HHhCCCccEEEE
Q 014227 327 LKACPFLQKLVI 338 (428)
Q Consensus 327 L~~~P~L~~L~i 338 (428)
+..|++|+.+.+
T Consensus 296 F~~c~~L~~l~l 307 (401)
T 4fdw_A 296 LEGCPKLARFEI 307 (401)
T ss_dssp TTTCTTCCEECC
T ss_pred hhCCccCCeEEe
Confidence 345566665555
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=83.82 E-value=0.94 Score=42.69 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=83.1
Q ss_pred CCCCCcccceEEeeeE--EeehHHHHHHHhcCCcccceeeccc-----------CCceeeEEecCCCCcceEEeeecCCc
Q 014227 159 GLSGIKSLRSLCLNAL--KVSGEVLEFFIHSCPHLEHLYVANS-----------SELLSLKVVGSSIPLKYLDIHYCYSM 225 (428)
Q Consensus 159 ~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~-----------~~~~~l~i~~~~~~L~~L~l~~c~~l 225 (428)
.+.+|.+|+.+.+..- .+.+. .+.+|+.|+.+.+... ..+..+.++.....+..-...+|..+
T Consensus 180 ~F~~c~~L~~i~l~~~~~~I~~~----~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRNLKIIRDY----CFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCEECTT----TTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSC
T ss_pred cccCCCCceEEEcCCCceEeCch----hhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccc
Confidence 3557888998887532 23333 3677888888877432 22333333321111111111233333
Q ss_pred ceEEEE-------------CCCcceEEEcceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227 226 KEIEIS-------------ASSLVSFRYSGKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN 291 (428)
Q Consensus 226 ~~i~i~-------------ap~L~~L~~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~ 291 (428)
+.+.+. ++.++...+..... ...+..+.+|+++.+... ...++. ... .+|.+|+.++|...-
T Consensus 256 ~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~--~aF-~~c~~L~~i~lp~~v 331 (394)
T 4fs7_A 256 ESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGE--EAF-ESCTSLVSIDLPYLV 331 (394)
T ss_dssp CEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECT--TTT-TTCTTCCEECCCTTC
T ss_pred eeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceech--hhh-cCCCCCCEEEeCCcc
Confidence 333321 23344433332222 123456778888877432 111110 112 788999999885331
Q ss_pred eeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227 292 EVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 292 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
.......+..+.+|+++.+... -.... ..-+..|++|+++.|.
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~---l~~I~--~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS---LRKIG--ANAFQGCINLKKVELP 374 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT---CCEEC--TTTBTTCTTCCEEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc---ccEeh--HHHhhCCCCCCEEEEC
Confidence 1111112566788888877211 11111 1235789999999884
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=81.55 E-value=2 Score=39.37 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=41.5
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC-CchhHHHHHH
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC-ESLLGLSFVL 327 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~lL 327 (428)
+.++++|+.+++..+....+.. ..+ ..+++|+.|+|+...+....-......+|+.|.|..+...+ ....++...+
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~--~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAP--DAF-HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECT--TGG-GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred hccccCCCEEECCCCccceeCH--HHh-cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHH
Confidence 5567777777776654443110 122 67888888888877543211111112238888886553332 3344555554
Q ss_pred H
Q 014227 328 K 328 (428)
Q Consensus 328 ~ 328 (428)
+
T Consensus 129 ~ 129 (347)
T 2ifg_A 129 E 129 (347)
T ss_dssp H
T ss_pred H
Confidence 4
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=76.09 E-value=0.57 Score=41.67 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCcccceEEeeeEEeeh-HHHHHHHhcCCcccceeecccC
Q 014227 162 GIKSLRSLCLNALKVSG-EVLEFFIHSCPHLEHLYVANSS 200 (428)
Q Consensus 162 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~ 200 (428)
++++|++|+|++..+.+ ..+..++..+|+|+.|.|.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 35667777777666544 2344445566777777776543
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=73.31 E-value=0.9 Score=41.86 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=17.7
Q ss_pred CCCCcccceEEeee-EEeehHHHHHHHhcCCcccceeecccC
Q 014227 160 LSGIKSLRSLCLNA-LKVSGEVLEFFIHSCPHLEHLYVANSS 200 (428)
Q Consensus 160 ~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~ 200 (428)
+..+++|+.|+|.+ ..+..- ....+.++++|+.|+|.++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 67 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG 67 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC
T ss_pred CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc
Confidence 33455556666553 322110 00114455555555555553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=68.59 E-value=2.2 Score=35.85 Aligned_cols=124 Identities=13% Similarity=0.023 Sum_probs=71.2
Q ss_pred hhccccCCcceeEEeeee-eeeecc---cC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCC
Q 014227 273 GLVVCCFPQLKTLDLECC-NEVFME---FG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRT 346 (428)
Q Consensus 273 ~l~~~~~~~l~~L~l~~~-~~~~~~---~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~ 346 (428)
.++ ..-+.|+.|.++.. .+.... +. +..-..|++|+|..+..++.....+...|+.-..|+.|+|+...-. .
T Consensus 35 ~ll-~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig-~ 112 (197)
T 1pgv_A 35 RLR-EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT-P 112 (197)
T ss_dssp HHH-TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC-H
T ss_pred HHH-hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC-H
Confidence 444 66677788887653 222211 11 4456678888885554444455567888888888888888643210 0
Q ss_pred cccccccCCcC--ccCCccEEEEee----eeeCCchHHHHHHHHhcccccccEEEecCchh
Q 014227 347 IGEKRHQIPVH--LHQHLKVVELHE----FRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSR 401 (428)
Q Consensus 347 ~~~~~~~~p~~--~~~~L~~v~i~~----f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~ 401 (428)
.|-. . +-+. .-..|+.+.+.+ .-|.+.+.++++.+ +.-+.|.++.+.+...+
T Consensus 113 ~Ga~-a-la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLA-R-LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASME 170 (197)
T ss_dssp HHHH-H-HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCHH
T ss_pred HHHH-H-HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCcc
Confidence 1100 0 0011 124588888864 22555566677755 44567888888766544
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=60.62 E-value=5.8 Score=37.13 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=37.8
Q ss_pred CCcceEEEcceee---eeecCCCCCeeEEEEeccCcchh-hHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEE
Q 014227 233 SSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQV-RYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHL 308 (428)
Q Consensus 233 p~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~-~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L 308 (428)
.+|+.+.+..... ...+.++.+|+++.+... ...+ .+.+ .+|.+|+.+++....... -....+.+|+.+
T Consensus 311 ~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF----~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i 383 (394)
T 4gt6_A 311 ISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAF----SNCTALNNIEYSGSRSQW--NAISTDSGLQNL 383 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG----TTCTTCCEEEESSCHHHH--HTCBCCCCC---
T ss_pred CCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh----hCCCCCCEEEECCceeeh--hhhhccCCCCEE
Confidence 5566665543211 123567889999988432 1111 1222 889999999987653221 124556788888
Q ss_pred EE
Q 014227 309 KL 310 (428)
Q Consensus 309 ~l 310 (428)
.+
T Consensus 384 ~i 385 (394)
T 4gt6_A 384 PV 385 (394)
T ss_dssp --
T ss_pred Ee
Confidence 77
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=55.59 E-value=6.7 Score=32.88 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=32.8
Q ss_pred ccCCcceeEEeeeeeeeecccC-----CCCCCCccEEEEEeecC---CCCchhHHHHHHHhCCCccEEEEE
Q 014227 277 CCFPQLKTLDLECCNEVFMEFG-----HWELPKLLHLKLTITEP---NCESLLGLSFVLKACPFLQKLVIK 339 (428)
Q Consensus 277 ~~~~~l~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~---~~~~~~~l~~lL~~~P~L~~L~i~ 339 (428)
..-..|++|+|+...+...... +..-..|++|.|..+.. +......+...|+.-+.|++|.++
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 4556677777765543322111 44445577777642211 112223456666677777776664
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=54.90 E-value=15 Score=34.12 Aligned_cols=123 Identities=13% Similarity=0.134 Sum_probs=60.1
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHH
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLK 328 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~ 328 (428)
+.++..|+.+.+...... ++. ... ..+.+|+.+.+...-.......+..+.+|+++.|-. .. .... ..-+.
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~--~aF-~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v-~~I~--~~aF~ 331 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGT--GAF-MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GI-TQIL--DDAFA 331 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECT--TTT-TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TC-CEEC--TTTTT
T ss_pred eeecccccEEecccccce-ecC--ccc-ccccccccccCCCcccccCceeecCCCCcCEEEeCC--cc-cEeh--HhHhh
Confidence 457788888877432211 110 122 678888888885331111111256678888888721 11 0110 12357
Q ss_pred hCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227 329 ACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK 396 (428)
Q Consensus 329 ~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 396 (428)
.|.+|+++.|-. . ... +.+. -+.+|+.|.+.+ ... . .. -......|+.+.+.
T Consensus 332 ~C~~L~~i~ip~--s------v~~-I~~~aF~~C~~L~~i~~~~---~~~--~-~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 332 GCEQLERIAIPS--S------VTK-IPESAFSNCTALNNIEYSG---SRS--Q-WN-AISTDSGLQNLPVA 386 (394)
T ss_dssp TCTTCCEEEECT--T------CCB-CCGGGGTTCTTCCEEEESS---CHH--H-HH-TCBCCCCC------
T ss_pred CCCCCCEEEECc--c------cCE-EhHhHhhCCCCCCEEEECC---cee--e-hh-hhhccCCCCEEEeC
Confidence 899999988831 1 111 1111 146888888764 211 1 11 12456778877764
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=48.49 E-value=15 Score=33.89 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=40.6
Q ss_pred cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-ccCCCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EFGHWELPKLLHLKLTITEPNCESLLGLSFVL 327 (428)
Q Consensus 249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL 327 (428)
+.++.+|+.+.+... ...++. ... ..|.+|+.+.+........ ...+..+.+|+++.|-. . -.... ..-+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~--~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~-l~~I~--~~aF 329 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPY--LLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--A-LKTIQ--VYAF 329 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECT--TTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--T-CCEEC--TTTT
T ss_pred cceeehhcccccccc-ceeccc--ccc-ccccccccccccccccceehhhhhcCCCCCCEEEcCc--c-ccEEH--HHHh
Confidence 345666777666322 111110 122 6778888888754322111 11155667788777721 1 00110 1224
Q ss_pred HhCCCccEEEE
Q 014227 328 KACPFLQKLVI 338 (428)
Q Consensus 328 ~~~P~L~~L~i 338 (428)
.+|.+|+++.|
T Consensus 330 ~~C~~L~~i~i 340 (379)
T 4h09_A 330 KNCKALSTISY 340 (379)
T ss_dssp TTCTTCCCCCC
T ss_pred hCCCCCCEEEE
Confidence 67888888776
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=31.30 E-value=22 Score=32.73 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=33.9
Q ss_pred ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEE
Q 014227 248 HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKL 310 (428)
Q Consensus 248 ~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l 310 (428)
.+.++++|+++.+.......++. ... .+|.+|+.++|...-.......+..|.+|+++.|
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~--~aF-~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEP--RVF-MDCVKLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECT--TTT-TTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccceehh--hhh-cCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 35577888888885432222110 122 7888999988843311111112556677888776
No 169
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=25.09 E-value=33 Score=18.19 Aligned_cols=17 Identities=18% Similarity=0.518 Sum_probs=13.6
Q ss_pred HHHHHHHHhcccccccE
Q 014227 377 PEIAFFIFRNAKVLEKM 393 (428)
Q Consensus 377 ~~~~~~ll~~a~~L~~l 393 (428)
-+++.|+|+|.|+.+-+
T Consensus 9 sdimdfvlkntpsmqal 25 (31)
T 2agh_C 9 SDIMDFVLKNTPSMQAL 25 (31)
T ss_dssp HHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhCChhHHHH
Confidence 36788999999988754
Done!