BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014228
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/333 (83%), Positives = 299/333 (89%), Gaps = 2/333 (0%)
Query: 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
A GQ+ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEG
Sbjct: 9 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEG 68
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
LVRGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E +
Sbjct: 69 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 128
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct: 129 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
RTREGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD
Sbjct: 189 RTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITS 385
EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITS
Sbjct: 247 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 306
Query: 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
VQAIYVPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 307 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAI 339
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 553 bits (1424), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/331 (83%), Positives = 297/331 (89%), Gaps = 2/331 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 15 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 75 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 312
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
AIYVPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 313 AIYVPADDLTDPAPATTFAHLDATTVLSRAI 343
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/331 (83%), Positives = 297/331 (89%), Gaps = 2/331 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 15 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 75 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 312
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
AIYVPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 313 AIYVPADDLTDPAPATTFAHLDATTVLSRAI 343
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/331 (83%), Positives = 297/331 (89%), Gaps = 2/331 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 13 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 72
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 73 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 132
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 133 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 192
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 193 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 250
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 251 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 310
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
AIYVPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 311 AIYVPADDLTDPAPATTFAHLDATTVLSRAI 341
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/331 (83%), Positives = 297/331 (89%), Gaps = 2/331 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 121 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 180
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 241 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 298
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 299 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 358
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
AIYVPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 359 AIYVPADDLTDPAPATTFAHLDATTVLSRAI 389
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/331 (83%), Positives = 297/331 (89%), Gaps = 2/331 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 3 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 62
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 63 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 122
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 123 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 182
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 183 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 240
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 241 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 300
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
AIYVPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 301 AIYVPADDLTDPAPATTFAHLDATTVLSRAI 331
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 549 bits (1415), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/331 (83%), Positives = 296/331 (89%), Gaps = 2/331 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 15 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 75 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 312
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
AI VPADDLTDPAPATTFAHLDATTVLSR +
Sbjct: 313 AIXVPADDLTDPAPATTFAHLDATTVLSRAI 343
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 519 bits (1337), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/330 (78%), Positives = 289/330 (87%), Gaps = 4/330 (1%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 44 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 103
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 104 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 163
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 164 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 223
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 224 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 280
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 281 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 340
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSR 416
QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 341 QAVYVPADDLTDPAPATTFAHLDATTVLSR 370
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/330 (78%), Positives = 289/330 (87%), Gaps = 4/330 (1%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 66 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 186 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 242
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 243 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 302
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSR 416
QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 303 QAVYVPADDLTDPAPATTFAHLDATTVLSR 332
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/330 (78%), Positives = 289/330 (87%), Gaps = 4/330 (1%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 77 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 197 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 253
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 254 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 313
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSR 416
QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 314 QAVYVPADDLTDPAPATTFAHLDATTVLSR 343
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/330 (78%), Positives = 289/330 (87%), Gaps = 4/330 (1%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 11 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 70
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 71 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 130
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 131 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 190
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 191 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 247
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 248 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 307
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSR 416
QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 308 QAVYVPADDLTDPAPATTFAHLDATTVLSR 337
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/330 (78%), Positives = 289/330 (87%), Gaps = 4/330 (1%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 66 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 186 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 242
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 243 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 302
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSR 416
QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 303 QAVYVPADDLTDPAPATTFAHLDATTVLSR 332
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/330 (78%), Positives = 288/330 (87%), Gaps = 4/330 (1%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 77 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 197 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 253
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSA GYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 254 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERITTTKKGSVTSV 313
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSR 416
QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 314 QAVYVPADDLTDPAPATTFAHLDATTVLSR 343
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/333 (69%), Positives = 271/333 (81%), Gaps = 10/333 (3%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
G++ QV+G VVD++F+ G LP I A+ + L +E A H+G+ VVR +AM T+G
Sbjct: 4 GRIIQVMGPVVDIQFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMASTDG 63
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
LVRG ++TG+PI+VPVG+ TLGR+ NV+GEPIDE+G++ E PIHR AP F E +T
Sbjct: 64 LVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAPEFEELST 123
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
+IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+ HGG SVFAGVGE
Sbjct: 124 ADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGE 183
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
RTREGNDLY EM +SGVI SK ++V+GQMNEPPGAR RV LTGLT+AE+FRD
Sbjct: 184 RTREGNDLYHEMKDSGVI--------SKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDR 235
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITS 385
EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TKKGSITS
Sbjct: 236 EGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITS 295
Query: 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+QAIYVPADD TDPAPATTFAHLDATT L R++
Sbjct: 296 IQAIYVPADDYTDPAPATTFAHLDATTNLERKL 328
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/341 (68%), Positives = 275/341 (80%), Gaps = 19/341 (5%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR--------LVLEVAQHMGEGVVRTI 138
G+V QV+G VVDV+F+ G LP I AL++ H R L LEVA H+G+ VRTI
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKI-QHKARNENEVDIDLTLEVALHLGDDTVRTI 62
Query: 139 AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREA 197
AM T+GL+RG V++TG+PI+VPVG+VTLGR+ NV+GEPID +GD+ + PIHR A
Sbjct: 63 AMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPA 122
Query: 198 PAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
P F E ATE +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELI+N+A+ HGG
Sbjct: 123 PKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182
Query: 258 SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317
SVFAGVGERTREGNDLY EM +SGVI SK A+V+GQMNEPPGAR RV LTGLT
Sbjct: 183 SVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGLT 234
Query: 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT 377
+AE+FRD +GQD LLFIDNIFRFTQA SEVSALLGR+PSA+GYQPTLAT++G LQERIT+
Sbjct: 235 MAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITS 294
Query: 378 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
T KGSITS+QAIYVPADD TDPAPATTF+HLDATT L R++
Sbjct: 295 TAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKL 335
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 262/334 (78%), Gaps = 10/334 (2%)
Query: 86 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTE 144
A G++ QVIGAVVDV F + +P + ALEV + + RLVLEV Q +G G+VRTIAM ++
Sbjct: 1 ATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSD 60
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
GL RG V + PI VPVG TLGRIMNV+GEP+D KG++ E IHR AP++ E +
Sbjct: 61 GLRRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELS 120
Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A H G+SVFAGVG
Sbjct: 121 NSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 180
Query: 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324
ERTREGND Y EM +S VI K +LVYGQMNEPPG R RV LTGLT+AE FRD
Sbjct: 181 ERTREGNDFYHEMTDSNVI--------DKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 232
Query: 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSIT 384
EG+DVLLF+DNI+R+T A +EVSALLGR+PSAVGYQPTLA ++G LQERIT+TK GSIT
Sbjct: 233 -EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSIT 291
Query: 385 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
SVQA+YVPADDLTDP+PATTFAHLDAT VLSRQ+
Sbjct: 292 SVQAVYVPADDLTDPSPATTFAHLDATVVLSRQI 325
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 265/339 (78%), Gaps = 7/339 (2%)
Query: 84 KGAIGQVCQVIGAVVDVRFDEG-LPPILTAL-----EVVDHSVRLVLEVAQHMGEGVVRT 137
K +G++ Q+IG V++V F G +P I AL + + + EV Q +G VR
Sbjct: 17 KKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRA 76
Query: 138 IAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREA 197
+AM T+GL RG V++TG+P++VPVG TLGRI NV+GEP+D + T PIHR A
Sbjct: 77 VAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSA 136
Query: 198 PAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
PAF + T+ I TGIKVV+LLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG
Sbjct: 137 PAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV 196
Query: 258 SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317
SVF GVGERTREGNDLY EM ESGVI A+SK ALVYGQMNEPPGAR RVGLT LT
Sbjct: 197 SVFGGVGERTREGNDLYMEMKESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALT 255
Query: 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT 377
+AE+FRD QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G LQERIT+
Sbjct: 256 MAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS 315
Query: 378 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 416
TK+GSITS+QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 316 TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSR 354
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 20/260 (7%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHR----EAPAFVEQATEQQILVTGIKVVD 218
VG LGR+++ IG P++ YLP R E P + + Q + G++ +D
Sbjct: 7 VGDALLGRLIDGIGRPMESN---IVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAID 63
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
L G +IG+F G+GVGK+ L+ + N A V A +GER RE N+ +
Sbjct: 64 GLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGREVNEFLALLP 120
Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
+S + SKC LV + P R + T T+AE+FRD +G++VLL +D++
Sbjct: 121 QSTL---------SKCVLVVTTSDRPALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVT 170
Query: 339 RFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398
R+ +A +V G G+ P++ + L L ER KGSIT++ + + +D++ D
Sbjct: 171 RYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230
Query: 399 PAPATTFAHLDATTVLSRQV 418
P + LD VL+R++
Sbjct: 231 PIGDEVRSILDGHIVLTREL 250
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 139/300 (46%), Gaps = 41/300 (13%)
Query: 138 IAMDGTEGLVRGQRV---------LNTGSPITVPVGRVTLGRIMNVIGEPID-------- 180
+ ++ EG++ G RV L +G +P+G LGR+++ G+P+D
Sbjct: 62 MPLEEVEGILPGARVYARNGHGDGLQSGK--QLPLGPALLGRVLDGGGKPLDGLPAPDTL 119
Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
E G L T + P+ R + +L TG++ ++ L RG ++GLF G+GVGK+
Sbjct: 120 ETGALITPPFNPLQR--------TPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS 171
Query: 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300
VL + ++ +A V +GER RE D ++ ++ ++
Sbjct: 172 VL-LGMMARYTRAD--VIVVGLIGERGREVKDFIENIL--------GPDGRARSVVIAAP 220
Query: 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGY 360
+ P R + +AE FRD GQ VLL +D++ R+ A E++ +G P+ GY
Sbjct: 221 ADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGY 279
Query: 361 QPTLATDLGGLQERITTTKK--GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
P++ L L ER GSIT+ + DD DP + A LD VLSR++
Sbjct: 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRL 339
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
+++ +LK H P+ R P V++ + +TG++++D+L P GG + G G
Sbjct: 175 LEDGTELKMYHTWPVRRARP--VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGS 232
Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
GKTV L ++ V+ G GER E D+ E E K G + L+
Sbjct: 233 GKTVTQQSLAK---WSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLM-HRTVLI 288
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSA 357
N P AR G+T+AE+FRD +G V L D+ R+ +A E+S+ L +P+
Sbjct: 289 ANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAEALREISSRLEEMPAE 347
Query: 358 VGYQPTLATDLGGLQERITTT-----KKGSITSVQAIYVPADDLTDPAPATT------FA 406
GY P LA L ER ++G++T V A+ P D+++P +T F
Sbjct: 348 EGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFW 407
Query: 407 HLDATTVLSRQ 417
LDA+ R
Sbjct: 408 RLDASLAFRRH 418
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G AG GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPAGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGAFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
+++ +LK H P+ R P V++ + +TG++++D+L P GG + G G
Sbjct: 175 LEDGTELKMYHTWPVRRARP--VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGS 232
Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
GK+V L ++ V+ G GER E D+ E E K G + L+
Sbjct: 233 GKSVTQQSLAK---WSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLM-HRTVLI 288
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSA 357
N P AR G+T+AE+FRD +G V L D+ R+ +A E+S+ L +P+
Sbjct: 289 ANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAEALREISSRLEEMPAE 347
Query: 358 VGYQPTLATDLGGLQERITTT-----KKGSITSVQAIYVPADDLTDPAPATT------FA 406
GY P LA L ER ++G++T V A+ P D+++P +T F
Sbjct: 348 EGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFW 407
Query: 407 HLDATTVLSRQ 417
LDA+ R
Sbjct: 408 RLDASLAFRRH 418
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGAGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 14/285 (4%)
Query: 140 MDGTEGL-VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
+GT G+ ++ V G P+ + V +GR+ + +G P D ++ E YL I+ E
Sbjct: 64 FEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGG 256
+ + + + TGI +D L RG K+ +F G+G+ L ++ V +
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 257 FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
F+ VFA +G E + ++G I + + N+P R
Sbjct: 184 FAVVFAAIGITFEEAEFFMEDFRQTGAI--------DRSVMFMNLANDPAIERIATPRMA 235
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI 375
LT AE+ +G VL+ + ++ + +A E+SA +P GY L T+L L ER
Sbjct: 236 LTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERA 295
Query: 376 TTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+ KGS+T + + +P DD T P P T + +L+R++
Sbjct: 296 GRIRGLKGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTREL 340
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
+A ++ V + M L G +V TG + VPVGR LGR++N +G PID KG L
Sbjct: 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+ + + AP +E+ + Q + TG K VD + P RG + + G GKT L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N + G ++ +G++ +++ R++ E G + + +V +E
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL--------ANTIVVVATASESA 232
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
+ G + E+FRD G+D L+ D++ + A ++S LL R P
Sbjct: 233 ALQYLAPYAGCAMGEYFRD-RGEDALIIYDDLSKQAVAYRQISLLLRRPP 281
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GK V +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKAVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPAPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFASGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G KTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSAKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G G TV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGATVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATT------FAHLDATTVLSRQ 417
++P T F LDA R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRH 426
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 16/298 (5%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
V+ +AQ++ E V + + + G +V TG + VPVG LGR++N +G+P+D +
Sbjct: 59 VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGR 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
G ++T Y PI AP +++ + + L TGIK +D + P RG + + G GKT +
Sbjct: 119 GPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTI 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK-LGDKQADSKCALVYGQM 301
++ I N K ++ +G+ ++ +GV++ L A +V
Sbjct: 179 AIDTIIN-QKGQDVICIYVAIGQ---------KQSTVAGVVETLRQHDALDYTIVVTASA 228
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361
+EP G + E+F +G+ L+ D++ + A E+S LL R P Y
Sbjct: 229 SEPAPLLYLAPYAGCAMGEYFM-YKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYP 287
Query: 362 PTLATDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 415
+ L ER GS+T++ I A D++ P + D L
Sbjct: 288 GDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLE 345
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 20/268 (7%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222
V + LGR N IG+PID + E LPI V + +Q + TGI +D++
Sbjct: 84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGGFSVFAGVGERTREGND 272
RG K+ +F G+G+ + ++ K VFA +G RE +
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
+E +G + S+ L + ++P R LTVAE+ VL+
Sbjct: 204 FIQEFERTGAL--------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLV 255
Query: 333 FIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQAIY 390
+ ++ +++A E+ A IP GY + TDL + ER + KKGS+T + +
Sbjct: 256 ILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILS 315
Query: 391 VPADDLTDPAPATTFAHLDATTVLSRQV 418
+P DD T P P T + LSR++
Sbjct: 316 MPDDDRTHPIPDLTGYITEGQIQLSREL 343
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 20/268 (7%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222
V + LGR N IG+PID + E LPI V + +Q + TGI +D++
Sbjct: 84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGGFSVFAGVGERTREGND 272
RG K+ +F G+G+ + ++ K VFA +G RE +
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
+E +G + S+ L + ++P R LTVAE+ VL+
Sbjct: 204 FIQEFERTGAL--------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLV 255
Query: 333 FIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQAIY 390
+ ++ + +A E+ A IP GY + TDL + ER + KKGS+T + +
Sbjct: 256 ILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILS 315
Query: 391 VPADDLTDPAPATTFAHLDATTVLSRQV 418
+P DD T P P T + LSR++
Sbjct: 316 MPDDDRTHPIPDLTGYITEGQIQLSREL 343
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 14/294 (4%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
VA ++ E V I + + + G V I VPVG LGR++N +GEP+D KG +
Sbjct: 75 VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+++ PI +AP + + L TGIK +D P RG + + G GKT + ++
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAID 194
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N K G + ++ +G++ + I + KL A +V ++P
Sbjct: 195 TIIN-QKGQGVYCIYVAIGQK--------KSAIARIIDKLRQYGAXEYTTVVVASASDPA 245
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA 365
+ G E+F + G+D L+ D++ + A ++S L R P Y +
Sbjct: 246 SLQYIAPYAGCAXGEYFAYS-GRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIF 304
Query: 366 TDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 415
L ER GS+T++ + A+D++ P + D L
Sbjct: 305 YLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAYIPTNVISITDGQIYLE 358
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 127/284 (44%), Gaps = 13/284 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ T + +++ +V + F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAF 176
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+ VFA +G E + ++G ++ + + ++P R L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 288
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
I KGS+T + + +P DD+T P P + + V++R++
Sbjct: 289 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVAREL 332
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 23/249 (9%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
+L P+ R P ++Q + ++TG +V+D P +GG + G G GKTV
Sbjct: 191 ELTMMQKWPVRRGRP--IKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTV- 247
Query: 243 IMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301
+ + +AK V+ G GER E D+ E E G+ + + L+
Sbjct: 248 ---VQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLME-RTVLIANTS 303
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361
N P AR TG+T+AE+FRD G DV + D+ R+ +A E+S L +P GY
Sbjct: 304 NMPVAAREASIYTGITIAEYFRDM-GYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYP 362
Query: 362 PTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATT------FAHL 408
L + L ER + ++GSIT++ A+ D+++P T F L
Sbjct: 363 AYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGL 422
Query: 409 DATTVLSRQ 417
D++ R
Sbjct: 423 DSSLAQKRH 431
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 14/296 (4%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
V+ +A ++ E V + + G+ G V TG + VPVG +GR++N +G+P+D
Sbjct: 59 VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGL 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
G ++T PI AP +++ + + L TGIK +D L P RG + + G GKT +
Sbjct: 119 GPVETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSV 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
++ I N K ++ +G++ + + V L A +V +
Sbjct: 179 AIDTIIN-QKDQNMICIYVAIGQK--------ESTVATVVETLAKHGAPDYTIVVTASAS 229
Query: 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP 362
+P G+ + E+F G+ VL+ ID++ + A ++S LL R P Y
Sbjct: 230 QPAPLLFLAPYAGVAMGEYFM-IMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPG 288
Query: 363 TLATDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 414
+ L ER GS+T++ + A D++ P + D L
Sbjct: 289 DIFYLHSRLLERAAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFL 344
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 14/285 (4%)
Query: 140 MDGTEGL-VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
+GT G+ ++ V G P+ + V +GR+ + +G P D ++ E YL I+ E
Sbjct: 64 FEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGG 256
+ + + + TGI +D L RG K+ +F G+G+ L ++ V +
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 257 FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
F+ VFA +G E + ++G I + N+P R
Sbjct: 184 FAVVFAAIGITFEEAEFFXEDFRQTGAI--------DRSVXFXNLANDPAIERIATPRXA 235
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI 375
LT AE+ +G VL+ + + +A E+SA +P GY L T+L L ER
Sbjct: 236 LTAAEYLAYEKGXHVLVIXTDXTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERA 295
Query: 376 TTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+ KGS+T + + P DD T P P T + +L+R++
Sbjct: 296 GRIRGLKGSVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTREL 340
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+ VFA +G E + ++G ++ + + ++P R L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 297
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
I KGS+T + + +P DD+T P P + + V++R++
Sbjct: 298 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVAREL 341
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+ VFA +G E + ++G ++ + + ++P R L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 297
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
I KGS+T + + +P DD+T P P + + V++R++
Sbjct: 298 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVAREL 341
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESAF 176
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+ VFA +G E + ++G ++ + + ++P R L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 288
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
I KGS+T + + +P DD+T P P + + V++R++
Sbjct: 289 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVAREL 332
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAF 176
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+ VFA +G E + ++G ++ + + ++P R L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 288
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
I KGS+T + + +P DD+T P P + + V++R++
Sbjct: 289 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVAREL 332
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 109/249 (43%), Gaps = 23/249 (9%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
+L P+ R P ++Q + +TG +V+D P +GG + G G GKTV
Sbjct: 191 ELTXXQKWPVRRGRP--IKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKTV- 247
Query: 243 IMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301
+ + +AK V+ G GER E D+ E E G+ + + L+
Sbjct: 248 ---VQHQIAKWSDVDLVVYVGCGERGNEXTDVVNEFPELIDPNTGESLXE-RTVLIANTS 303
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361
N P AR TG+T+AE+FRD G DV + D+ R+ +A E S L P GY
Sbjct: 304 NXPVAAREASIYTGITIAEYFRDX-GYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYP 362
Query: 362 PTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATT------FAHL 408
L + L ER + ++GSIT++ A+ D+++P T F L
Sbjct: 363 AYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGL 422
Query: 409 DATTVLSRQ 417
D++ R
Sbjct: 423 DSSLAQKRH 431
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 59 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 118
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 119 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 178
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 179 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 230
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 231 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 289
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 290 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 338
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 54 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 113
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 114 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 173
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 174 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 225
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 226 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 284
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 285 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 333
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 308 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 356
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 308 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 356
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 308 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 356
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 120 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 179
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 180 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 239
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 240 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 291
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 292 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 350
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 351 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 399
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 308 RAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 356
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
R GS+T++ I A D++ P + D L ++
Sbjct: 308 RAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 356
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 50 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 109
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 110 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 169
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 170 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 221
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 222 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 280
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L ER + GS+T++ I D++ P + D L ++
Sbjct: 281 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAEL 333
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 51 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 110
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 111 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 170
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 171 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 222
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 223 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 281
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L ER + GS+T++ I D++ P + D L ++
Sbjct: 282 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAEL 334
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 305
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L ER + GS+T++ I D++ P + D L ++
Sbjct: 306 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAEL 358
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 305
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L ER + GS+T++ I D++ P + D L ++
Sbjct: 306 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAEL 358
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 305
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L ER + GS+T++ I D++ P + D L ++
Sbjct: 306 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAEL 358
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 110 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 169
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 170 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 229
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 230 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 281
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 282 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 340
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L ER + GS+T++ I D++ P + D L ++
Sbjct: 341 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAEL 393
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 37/323 (11%)
Query: 100 VRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
V F+EG I AL + ++V +VL MG+G++ + G V TG
Sbjct: 54 VEFEEG--TIGIALNLESNNVGVVL-----MGDGLM----------IQEGSSVKATGRIA 96
Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
+PV LGR++N + +PID +G++ I AP + + + + L TG+ +D
Sbjct: 97 QIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDA 156
Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
+ P RG + + G GKT + + I N + V+ +G++ + E
Sbjct: 157 MIPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQE 215
Query: 280 SGVIKLG---DKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
G ++ + ADS L Y TG +AE+F E ++++ D+
Sbjct: 216 RGAMEYTIVVAETADSPATLQY-----------LAPYTGAALAEYFMYRERHTLIIY-DD 263
Query: 337 IFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK----KGSITSVQAIYVP 392
+ + QA ++S LL R P Y + L ER +GS+T++ +
Sbjct: 264 LSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQ 323
Query: 393 ADDLTDPAPATTFAHLDATTVLS 415
A D++ P + D LS
Sbjct: 324 AGDVSAYIPTNVISITDGQIFLS 346
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 211 VTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTRE 269
+ +++DL AP +G + + GKT ++ E+ N +A+ H + + ER E
Sbjct: 160 IYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEE 219
Query: 270 GNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD 329
D+ + + ++ + PP + +V L +A+ + D
Sbjct: 220 VTDI---------------RESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEF-NYD 263
Query: 330 VLLFIDNIFRFTQANSEV-----SALLGRIPSAVGYQP 362
V++ +D++ R + + V L G + A Y+P
Sbjct: 264 VVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKP 301
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + +E+ +T +V+DL +P RG + +
Sbjct: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 181
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT+L+ + ++A H + + ER E ++ R + K
Sbjct: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGE 226
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRI 354
+V +EP +V + A+ + + +DV++ +D+I R +A + V G++
Sbjct: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKV 284
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + +E+ +T +V+DL +P RG + +
Sbjct: 145 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 203
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT+L+ + ++A H + + ER E ++ R + K
Sbjct: 204 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGE 248
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRI 354
+V +EP +V + A+ + + +DV++ +D+I R +A + V G++
Sbjct: 249 VVASTFDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKV 306
>pdb|3I9W|A Chain A, Crystal Structure Of The E. Coli Histidine Kinase Sensor
Tors Sensor Domain
Length = 290
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 22/100 (22%)
Query: 278 IESGVIKLGDKQADSKCALVYGQMN-------------EPPGARARVGLTGLTVAEHF-- 322
++ V+ LG +Q + Q+N E PG RA+V T TV+++
Sbjct: 183 VQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDL 242
Query: 323 -----RDAEGQDVL--LFIDNIFRFTQANSEVSALLGRIP 355
+D+E + L L +NI +F Q +SEVS L+ I
Sbjct: 243 LALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIE 282
>pdb|1RR7|A Chain A, Crystal Structure Of The Middle Operon Regulator Protein
Of Bacteriophage Mu
Length = 129
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 118 HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGE 177
HS+ +V+ + +H+G G V + L+R R+ N + V G N + +
Sbjct: 52 HSLEIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDFNGRNVSELTTRYGVTFNTVYK 111
Query: 178 PIDEKGDLKTEHYLP 192
I LK Y P
Sbjct: 112 AIRRMRRLKYRQYQP 126
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 18/179 (10%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + E+ +T +V+DL +P RG + +
Sbjct: 123 KPENARNKILFENLTPLHANSRLRXERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 181
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT L+ + ++A H + + ER E + R + K
Sbjct: 182 AGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV---------------KGE 226
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRI 354
+V +EP +V + A+ + + +DV++ +D+I R +A + V G++
Sbjct: 227 VVASTFDEPASRHVQVAEXVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKV 284
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 18/179 (10%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + E+ +T +V+DL +P RG + +
Sbjct: 126 KPENARNKILFENLTPLHANSRLRXERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 184
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT L+ + ++A H + + ER E + R + K
Sbjct: 185 AGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV---------------KGE 229
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRI 354
+V +EP +V + A+ + + +DV++ +D+I R +A + V G++
Sbjct: 230 VVASTFDEPASRHVQVAEXVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKV 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,151,906
Number of Sequences: 62578
Number of extensions: 470764
Number of successful extensions: 1584
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 114
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)