Query 014228
Match_columns 428
No_of_seqs 312 out of 2592
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0055 AtpD F0F1-type ATP syn 100.0 9E-94 2E-98 711.1 24.8 328 86-421 2-334 (468)
2 KOG1350 F0F1-type ATP synthase 100.0 8.1E-94 1.7E-98 698.5 15.7 340 80-421 45-384 (521)
3 TIGR03305 alt_F1F0_F1_bet alte 100.0 2.7E-89 5.9E-94 707.6 34.9 325 88-421 1-325 (449)
4 CHL00060 atpB ATP synthase CF1 100.0 1.2E-85 2.7E-90 684.1 36.9 336 84-421 13-355 (494)
5 PTZ00185 ATPase alpha subunit; 100.0 2.5E-85 5.5E-90 679.3 35.9 339 73-421 26-386 (574)
6 PRK09280 F0F1 ATP synthase sub 100.0 1.7E-84 3.6E-89 673.5 36.7 327 86-421 2-331 (463)
7 TIGR01039 atpD ATP synthase, F 100.0 1.2E-84 2.7E-89 672.7 35.5 327 87-421 2-330 (461)
8 PRK12597 F0F1 ATP synthase sub 100.0 2.9E-84 6.3E-89 673.3 36.1 327 86-421 2-330 (461)
9 PRK02118 V-type ATP synthase s 100.0 3.9E-83 8.5E-88 658.4 34.6 319 85-418 3-322 (436)
10 TIGR03324 alt_F1F0_F1_al alter 100.0 6.2E-83 1.3E-87 665.1 33.8 321 85-421 26-351 (497)
11 PRK04196 V-type ATP synthase s 100.0 2E-82 4.4E-87 660.9 36.1 325 85-421 2-335 (460)
12 TIGR01041 ATP_syn_B_arch ATP s 100.0 1.5E-82 3.3E-87 660.5 34.6 324 86-421 1-333 (458)
13 COG1157 FliI Flagellar biosynt 100.0 4.2E-82 9.1E-87 638.0 31.6 324 83-422 21-347 (441)
14 PRK13343 F0F1 ATP synthase sub 100.0 8.3E-82 1.8E-86 658.8 33.0 321 85-421 26-351 (502)
15 CHL00059 atpA ATP synthase CF1 100.0 8.6E-82 1.9E-86 654.2 32.8 320 86-421 6-330 (485)
16 PRK09281 F0F1 ATP synthase sub 100.0 2.7E-81 5.9E-86 657.4 34.1 321 85-421 26-351 (502)
17 TIGR00962 atpA proton transloc 100.0 7.6E-81 1.6E-85 653.9 33.8 321 85-421 25-350 (501)
18 PRK06936 type III secretion sy 100.0 9.2E-80 2E-84 635.1 33.3 322 84-421 21-345 (439)
19 PRK08972 fliI flagellum-specif 100.0 1.1E-79 2.5E-84 633.3 33.6 320 86-421 25-347 (444)
20 TIGR01040 V-ATPase_V1_B V-type 100.0 1.8E-79 4E-84 632.7 33.5 323 86-421 1-342 (466)
21 PRK08927 fliI flagellum-specif 100.0 3.3E-79 7.2E-84 631.4 34.8 324 84-421 15-343 (442)
22 PRK07165 F0F1 ATP synthase sub 100.0 3.3E-79 7.2E-84 636.9 33.7 317 89-421 4-327 (507)
23 TIGR01043 ATP_syn_A_arch ATP s 100.0 8.6E-79 1.9E-83 641.0 32.7 323 88-421 2-419 (578)
24 PRK04192 V-type ATP synthase s 100.0 1.7E-78 3.7E-83 639.6 33.0 327 85-421 2-422 (586)
25 cd01135 V_A-ATPase_B V/A-type 100.0 3.4E-78 7.3E-83 590.3 24.5 256 158-421 1-261 (276)
26 TIGR01042 V-ATPase_V1_A V-type 100.0 1.9E-77 4.1E-82 628.5 31.5 326 86-421 1-425 (591)
27 PRK05688 fliI flagellum-specif 100.0 8.3E-77 1.8E-81 614.9 34.6 321 85-421 26-353 (451)
28 TIGR03497 FliI_clade2 flagella 100.0 6.1E-77 1.3E-81 613.4 32.9 318 88-421 1-320 (413)
29 TIGR03496 FliI_clade1 flagella 100.0 1.4E-76 3E-81 610.5 33.9 318 88-421 1-322 (411)
30 PRK09099 type III secretion sy 100.0 2.9E-76 6.3E-81 611.0 33.4 322 84-421 22-346 (441)
31 cd01133 F1-ATPase_beta F1 ATP 100.0 6.1E-77 1.3E-81 582.3 26.5 256 158-421 1-256 (274)
32 TIGR03498 FliI_clade3 flagella 100.0 4.3E-76 9.2E-81 607.2 32.2 318 88-421 1-325 (418)
33 PRK06820 type III secretion sy 100.0 7.8E-76 1.7E-80 607.2 33.1 318 86-421 29-346 (440)
34 PRK07960 fliI flagellum-specif 100.0 1.2E-75 2.6E-80 604.9 31.6 322 84-421 25-360 (455)
35 PRK07594 type III secretion sy 100.0 2.2E-75 4.8E-80 602.8 32.4 318 86-421 21-338 (433)
36 PRK05922 type III secretion sy 100.0 9.6E-75 2.1E-79 597.6 33.3 320 85-421 18-339 (434)
37 PRK08472 fliI flagellum-specif 100.0 8.3E-75 1.8E-79 598.6 32.7 321 84-421 16-340 (434)
38 COG0056 AtpA F0F1-type ATP syn 100.0 3.2E-75 6.9E-80 589.0 26.4 323 84-421 25-351 (504)
39 PRK08149 ATP synthase SpaL; Va 100.0 2.2E-74 4.9E-79 594.5 32.1 320 86-421 6-334 (428)
40 cd01132 F1_ATPase_alpha F1 ATP 100.0 4.4E-75 9.6E-80 568.3 25.0 253 159-421 2-258 (274)
41 TIGR02546 III_secr_ATP type II 100.0 3.5E-72 7.6E-77 580.4 33.2 320 86-421 5-328 (422)
42 PRK06002 fliI flagellum-specif 100.0 1.2E-71 2.6E-76 575.8 32.7 319 85-421 25-349 (450)
43 TIGR01026 fliI_yscN ATPase Fli 100.0 1.4E-71 3.1E-76 577.6 33.2 322 84-421 21-346 (440)
44 PRK07196 fliI flagellum-specif 100.0 1.4E-71 3.1E-76 574.6 32.0 321 85-421 16-339 (434)
45 PRK06793 fliI flagellum-specif 100.0 2.7E-69 5.8E-74 557.4 32.3 319 85-421 20-338 (432)
46 PRK07721 fliI flagellum-specif 100.0 6.5E-68 1.4E-72 550.0 31.2 322 84-421 16-341 (438)
47 PRK06315 type III secretion sy 100.0 1.6E-67 3.5E-72 545.5 30.5 322 85-421 22-348 (442)
48 cd01136 ATPase_flagellum-secre 100.0 1.9E-66 4.1E-71 520.4 24.0 252 158-421 1-252 (326)
49 cd01134 V_A-ATPase_A V/A-type 100.0 1.7E-66 3.7E-71 520.5 22.5 227 189-421 121-354 (369)
50 PRK14698 V-type ATP synthase s 100.0 4.1E-63 8.8E-68 552.8 29.6 166 254-421 681-853 (1017)
51 PF00006 ATP-synt_ab: ATP synt 100.0 3.7E-59 7.9E-64 444.1 17.8 198 212-421 1-202 (215)
52 COG1155 NtpA Archaeal/vacuolar 100.0 3.4E-57 7.4E-62 464.4 18.3 325 87-422 2-422 (588)
53 PRK12608 transcription termina 100.0 1.8E-56 3.9E-61 453.0 23.3 254 144-421 57-314 (380)
54 COG1156 NtpB Archaeal/vacuolar 100.0 1.7E-56 3.7E-61 448.4 20.4 328 84-421 4-338 (463)
55 KOG1352 Vacuolar H+-ATPase V1 100.0 1.7E-57 3.7E-62 452.8 12.8 332 82-422 16-445 (618)
56 KOG1351 Vacuolar H+-ATPase V1 100.0 2.6E-52 5.6E-57 404.2 20.5 325 84-422 21-365 (489)
57 PRK09376 rho transcription ter 100.0 1.1E-51 2.4E-56 419.3 25.8 256 144-421 89-350 (416)
58 PRK12678 transcription termina 100.0 1.5E-50 3.2E-55 423.7 24.2 249 144-421 331-597 (672)
59 TIGR00767 rho transcription te 100.0 2.8E-46 6E-51 381.2 20.8 255 144-421 89-349 (415)
60 cd01128 rho_factor Transcripti 100.0 6.5E-42 1.4E-46 332.6 19.6 192 214-422 4-198 (249)
61 COG1158 Rho Transcription term 100.0 1.1E-37 2.3E-42 307.1 18.2 259 144-421 92-354 (422)
62 KOG1353 F0F1-type ATP synthase 100.0 1.8E-29 3.9E-34 240.8 7.4 197 85-302 19-222 (340)
63 COG2256 MGS1 ATPase related to 99.8 3.2E-20 6.9E-25 188.1 6.1 137 194-378 16-178 (436)
64 KOG2028 ATPase related to the 99.6 3.9E-16 8.4E-21 156.8 8.2 141 194-377 130-295 (554)
65 PF05496 RuvB_N: Holliday junc 99.4 2.9E-13 6.3E-18 129.6 4.6 102 194-347 16-120 (233)
66 cd01120 RecA-like_NTPases RecA 99.2 1.2E-09 2.7E-14 96.0 17.4 160 229-416 2-165 (165)
67 PRK13341 recombination factor 99.0 9.6E-10 2.1E-14 121.7 7.6 57 194-250 20-76 (725)
68 PRK13342 recombination factor 98.9 6.8E-10 1.5E-14 115.6 5.6 57 194-250 4-60 (413)
69 PF02874 ATP-synt_ab_N: ATP sy 98.7 5.6E-08 1.2E-12 76.1 6.8 66 90-156 1-69 (69)
70 COG2255 RuvB Holliday junction 98.5 3.9E-08 8.5E-13 97.0 2.6 163 195-420 19-188 (332)
71 PRK14962 DNA polymerase III su 98.5 2.4E-07 5.2E-12 98.3 8.1 54 194-250 6-60 (472)
72 PF11421 Synthase_beta: ATP sy 98.5 7.8E-08 1.7E-12 69.6 2.3 47 1-47 1-49 (49)
73 PRK14956 DNA polymerase III su 98.4 2.9E-07 6.3E-12 97.4 6.7 59 190-251 5-65 (484)
74 PRK14949 DNA polymerase III su 98.4 4.4E-07 9.5E-12 101.7 7.5 54 195-251 9-63 (944)
75 smart00382 AAA ATPases associa 98.4 1.2E-06 2.7E-11 73.4 8.0 145 225-415 1-145 (148)
76 PRK14957 DNA polymerase III su 98.3 1.1E-06 2.4E-11 94.7 8.1 53 195-250 9-62 (546)
77 COG0467 RAD55 RecA-superfamily 98.3 1E-05 2.2E-10 78.9 14.1 187 208-420 3-197 (260)
78 PRK07994 DNA polymerase III su 98.3 1.4E-06 3E-11 95.5 7.6 139 195-357 9-149 (647)
79 PRK14960 DNA polymerase III su 98.3 1.8E-06 3.8E-11 94.4 7.7 55 194-251 7-62 (702)
80 PRK07003 DNA polymerase III su 98.3 1.5E-06 3.2E-11 96.1 7.0 55 194-251 8-63 (830)
81 PF06745 KaiC: KaiC; InterPro 98.2 3E-06 6.5E-11 80.6 8.0 182 211-417 2-186 (226)
82 PRK14951 DNA polymerase III su 98.2 1.6E-06 3.5E-11 94.7 6.7 55 194-251 8-63 (618)
83 PRK14964 DNA polymerase III su 98.2 2.4E-06 5.1E-11 91.1 7.8 53 195-250 6-59 (491)
84 PRK14958 DNA polymerase III su 98.2 2.2E-06 4.8E-11 91.8 7.1 54 194-250 8-62 (509)
85 PLN03025 replication factor C 98.2 3.1E-06 6.7E-11 85.2 7.8 55 193-250 4-58 (319)
86 PRK12323 DNA polymerase III su 98.2 2.6E-06 5.7E-11 93.0 7.4 54 195-251 9-63 (700)
87 PRK14955 DNA polymerase III su 98.1 5.7E-06 1.2E-10 86.0 7.5 55 194-251 8-63 (397)
88 cd01394 radB RadB. The archaea 98.1 5.5E-05 1.2E-09 71.5 13.6 52 210-262 1-54 (218)
89 PRK08691 DNA polymerase III su 98.1 6.1E-06 1.3E-10 90.8 7.7 53 195-250 9-62 (709)
90 PRK06645 DNA polymerase III su 98.1 7.4E-06 1.6E-10 87.7 7.7 60 189-251 7-68 (507)
91 PRK14959 DNA polymerase III su 98.1 9.1E-06 2E-10 88.7 8.2 54 194-250 8-62 (624)
92 PRK14952 DNA polymerase III su 98.1 9.3E-06 2E-10 88.3 8.1 55 194-251 5-60 (584)
93 PRK14961 DNA polymerase III su 98.0 8.8E-06 1.9E-10 83.6 7.2 53 195-250 9-62 (363)
94 PRK14969 DNA polymerase III su 98.0 7.5E-06 1.6E-10 88.2 6.9 53 195-250 9-62 (527)
95 PRK14963 DNA polymerase III su 98.0 1E-05 2.2E-10 86.7 7.6 55 194-251 6-61 (504)
96 PF00004 AAA: ATPase family as 98.0 7.6E-06 1.7E-10 69.9 5.3 22 229-250 1-22 (132)
97 PRK00080 ruvB Holliday junctio 98.0 8.7E-06 1.9E-10 82.2 6.1 54 194-250 17-75 (328)
98 PRK08084 DNA replication initi 98.0 2.4E-05 5.2E-10 75.6 8.7 37 215-251 34-70 (235)
99 PRK06893 DNA replication initi 98.0 2.9E-05 6.2E-10 74.7 8.9 61 191-252 5-65 (229)
100 PRK07764 DNA polymerase III su 98.0 1.4E-05 2.9E-10 90.2 7.4 55 194-251 7-62 (824)
101 PRK05563 DNA polymerase III su 97.9 1.9E-05 4.1E-10 85.7 7.4 54 195-251 9-63 (559)
102 PRK14965 DNA polymerase III su 97.9 2E-05 4.3E-10 85.8 7.2 55 194-251 8-63 (576)
103 TIGR00635 ruvB Holliday juncti 97.9 1.3E-05 2.8E-10 79.5 5.3 48 200-250 2-54 (305)
104 PRK06067 flagellar accessory p 97.9 0.00014 3E-09 69.8 12.2 70 208-281 5-76 (234)
105 PRK14954 DNA polymerase III su 97.9 2.7E-05 5.9E-10 85.3 7.9 55 194-251 8-63 (620)
106 TIGR03345 VI_ClpV1 type VI sec 97.9 2.5E-05 5.5E-10 88.6 7.7 51 195-251 180-233 (852)
107 PRK06647 DNA polymerase III su 97.8 3.4E-05 7.4E-10 83.8 7.8 54 194-250 8-62 (563)
108 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00059 1.3E-08 67.0 15.0 57 210-267 4-76 (259)
109 PRK09302 circadian clock prote 97.8 0.00039 8.5E-09 74.5 14.9 181 206-417 251-435 (509)
110 PRK09111 DNA polymerase III su 97.8 4E-05 8.6E-10 83.8 7.3 62 187-251 8-71 (598)
111 PRK12402 replication factor C 97.8 3.7E-05 8E-10 76.8 5.9 56 193-251 6-61 (337)
112 PRK08181 transposase; Validate 97.7 5.6E-05 1.2E-09 74.9 6.8 29 224-252 104-132 (269)
113 PRK06305 DNA polymerase III su 97.7 7.8E-05 1.7E-09 79.0 8.1 53 195-250 10-63 (451)
114 cd00009 AAA The AAA+ (ATPases 97.7 0.00047 1E-08 58.4 11.2 27 225-251 18-44 (151)
115 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00014 3E-09 69.3 8.5 122 210-342 1-129 (235)
116 PHA02544 44 clamp loader, smal 97.7 0.00015 3.2E-09 72.4 8.7 55 193-250 12-67 (316)
117 PRK09302 circadian clock prote 97.7 0.00065 1.4E-08 72.8 14.2 71 208-281 11-83 (509)
118 TIGR02639 ClpA ATP-dependent C 97.7 5.9E-05 1.3E-09 84.3 6.4 55 195-252 175-229 (731)
119 PRK05896 DNA polymerase III su 97.7 9.2E-05 2E-09 80.6 7.6 53 195-250 9-62 (605)
120 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.0013 2.9E-08 62.5 14.6 58 210-268 2-61 (229)
121 cd01393 recA_like RecA is a b 97.7 0.00033 7.2E-09 66.2 10.3 54 210-263 1-61 (226)
122 PRK08533 flagellar accessory p 97.7 0.0028 6E-08 61.2 16.8 68 210-281 6-75 (230)
123 PRK14948 DNA polymerase III su 97.6 0.00011 2.3E-09 80.9 7.7 55 194-251 8-63 (620)
124 PRK09361 radB DNA repair and r 97.6 0.002 4.4E-08 61.1 15.4 56 207-263 2-59 (225)
125 PRK08451 DNA polymerase III su 97.6 9.3E-05 2E-09 79.8 6.9 54 194-250 6-60 (535)
126 PRK07940 DNA polymerase III su 97.6 7.6E-05 1.6E-09 77.8 5.8 26 225-250 35-60 (394)
127 TIGR00602 rad24 checkpoint pro 97.6 8E-05 1.7E-09 81.8 5.7 58 193-250 75-134 (637)
128 PRK10865 protein disaggregatio 97.6 0.00011 2.5E-09 83.4 6.9 51 195-251 171-224 (857)
129 PRK14950 DNA polymerase III su 97.6 0.00014 3E-09 79.5 7.1 54 194-250 8-62 (585)
130 TIGR00678 holB DNA polymerase 97.5 0.00033 7.2E-09 64.8 8.5 31 221-251 8-39 (188)
131 PRK14953 DNA polymerase III su 97.5 0.00017 3.8E-09 77.0 7.5 53 195-250 9-62 (486)
132 cd01124 KaiC KaiC is a circadi 97.5 0.0016 3.4E-08 59.4 12.9 41 229-270 2-42 (187)
133 TIGR02012 tigrfam_recA protein 97.5 0.0003 6.6E-09 71.4 8.8 110 208-341 34-146 (321)
134 PRK07133 DNA polymerase III su 97.5 0.00015 3.3E-09 80.4 7.1 53 195-250 11-64 (725)
135 PRK00440 rfc replication facto 97.5 0.0003 6.4E-09 69.7 8.0 55 193-250 8-62 (319)
136 PRK06526 transposase; Provisio 97.5 0.00025 5.5E-09 69.6 7.4 28 224-251 96-123 (254)
137 PRK09354 recA recombinase A; P 97.5 0.00045 9.7E-09 70.9 9.1 111 207-341 38-151 (349)
138 cd01122 GP4d_helicase GP4d_hel 97.5 0.0016 3.4E-08 63.5 12.6 66 207-272 10-76 (271)
139 COG1484 DnaC DNA replication p 97.5 0.00029 6.4E-09 69.1 7.5 47 225-280 104-151 (254)
140 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.004 8.7E-08 59.2 15.0 65 213-281 1-67 (224)
141 TIGR02655 circ_KaiC circadian 97.5 0.002 4.4E-08 68.8 14.1 178 206-416 241-424 (484)
142 PLN00020 ribulose bisphosphate 97.5 0.00015 3.2E-09 74.8 5.2 26 225-250 147-172 (413)
143 PRK00149 dnaA chromosomal repl 97.4 0.00045 9.8E-09 72.9 8.9 38 226-263 148-186 (450)
144 PF00931 NB-ARC: NB-ARC domain 97.4 0.00024 5.3E-09 69.2 6.4 56 224-280 17-73 (287)
145 PF13401 AAA_22: AAA domain; P 97.4 0.00034 7.4E-09 60.0 6.5 55 225-280 3-61 (131)
146 TIGR02928 orc1/cdc6 family rep 97.4 0.00049 1.1E-08 69.8 8.7 101 224-342 38-143 (365)
147 TIGR02881 spore_V_K stage V sp 97.4 0.0004 8.7E-09 67.9 7.7 29 222-250 38-66 (261)
148 PF13173 AAA_14: AAA domain 97.4 0.00045 9.8E-09 60.1 7.3 84 226-353 2-86 (128)
149 cd00983 recA RecA is a bacter 97.4 0.00038 8.3E-09 70.8 7.7 111 207-341 33-146 (325)
150 TIGR02397 dnaX_nterm DNA polym 97.4 0.00036 7.8E-09 70.4 7.4 53 195-250 7-60 (355)
151 PRK14971 DNA polymerase III su 97.4 0.00029 6.3E-09 77.4 7.1 55 193-250 8-63 (614)
152 PF00308 Bac_DnaA: Bacterial d 97.4 0.00047 1E-08 66.1 7.7 36 226-261 34-70 (219)
153 PRK00411 cdc6 cell division co 97.4 0.00081 1.8E-08 69.0 9.7 99 223-341 52-151 (394)
154 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.00032 6.9E-09 67.7 6.3 68 210-281 3-72 (237)
155 PRK04328 hypothetical protein; 97.4 0.00035 7.6E-09 68.1 6.3 69 209-281 4-74 (249)
156 TIGR02236 recomb_radA DNA repa 97.4 0.0013 2.8E-08 65.8 10.6 125 207-342 74-206 (310)
157 PRK12377 putative replication 97.3 0.00038 8.3E-09 68.2 6.5 27 226-252 101-127 (248)
158 PRK08727 hypothetical protein; 97.3 0.00071 1.5E-08 65.3 8.1 25 227-251 42-66 (233)
159 PRK09183 transposase/IS protei 97.3 0.00095 2.1E-08 65.6 8.9 28 223-250 99-126 (259)
160 TIGR02237 recomb_radB DNA repa 97.3 0.0024 5.2E-08 59.8 11.1 42 223-265 9-50 (209)
161 PLN03187 meiotic recombination 97.3 0.002 4.4E-08 66.1 11.3 124 207-342 105-235 (344)
162 TIGR03346 chaperone_ClpB ATP-d 97.3 0.00037 7.9E-09 79.3 6.5 54 195-251 166-219 (852)
163 PRK14970 DNA polymerase III su 97.3 0.00061 1.3E-08 69.7 7.5 55 194-251 9-64 (367)
164 PRK06921 hypothetical protein; 97.3 0.00062 1.3E-08 67.3 7.3 29 224-252 115-143 (266)
165 TIGR02655 circ_KaiC circadian 97.3 0.00043 9.3E-09 73.9 6.2 70 209-281 2-73 (484)
166 PRK14087 dnaA chromosomal repl 97.2 0.00098 2.1E-08 70.7 8.6 36 227-262 142-178 (450)
167 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.00071 1.5E-08 63.8 6.4 36 215-250 27-62 (226)
168 PF01695 IstB_IS21: IstB-like 97.2 0.00088 1.9E-08 62.3 6.8 48 223-279 44-92 (178)
169 PTZ00361 26 proteosome regulat 97.2 0.00087 1.9E-08 70.8 7.2 26 225-250 216-241 (438)
170 TIGR00362 DnaA chromosomal rep 97.1 0.0017 3.6E-08 67.5 9.0 36 226-261 136-172 (405)
171 COG1223 Predicted ATPase (AAA+ 97.1 0.00025 5.4E-09 69.9 2.7 79 200-280 119-205 (368)
172 PRK08903 DnaA regulatory inact 97.1 0.00075 1.6E-08 64.2 5.9 27 224-250 40-66 (227)
173 TIGR03689 pup_AAA proteasome A 97.1 0.00082 1.8E-08 72.2 6.6 26 226-251 216-241 (512)
174 PRK04195 replication factor C 97.1 0.00062 1.4E-08 72.5 5.5 55 193-250 5-63 (482)
175 PF05729 NACHT: NACHT domain 97.1 0.0021 4.6E-08 56.6 8.1 42 228-269 2-48 (166)
176 PRK05564 DNA polymerase III su 97.1 0.0013 2.9E-08 65.9 7.5 57 201-260 3-65 (313)
177 PRK05973 replicative DNA helic 97.1 0.0042 9.1E-08 60.6 10.6 56 223-282 61-116 (237)
178 KOG0989 Replication factor C, 97.1 0.00071 1.5E-08 67.9 5.3 57 191-250 25-81 (346)
179 PRK04301 radA DNA repair and r 97.1 0.0036 7.8E-08 63.1 10.6 126 207-343 81-213 (317)
180 cd01121 Sms Sms (bacterial rad 97.1 0.0038 8.1E-08 64.7 10.9 55 207-262 61-117 (372)
181 PRK14086 dnaA chromosomal repl 97.1 0.0017 3.6E-08 71.1 8.6 36 228-263 316-352 (617)
182 TIGR02238 recomb_DMC1 meiotic 97.1 0.0067 1.4E-07 61.5 12.2 124 207-342 75-205 (313)
183 PRK14088 dnaA chromosomal repl 97.1 0.0024 5.3E-08 67.4 9.3 37 226-262 130-167 (440)
184 PRK08118 topology modulation p 97.0 0.0015 3.3E-08 59.9 6.8 25 227-251 2-26 (167)
185 COG1222 RPT1 ATP-dependent 26S 97.0 0.00033 7.3E-09 71.5 2.3 25 226-250 185-209 (406)
186 PRK09112 DNA polymerase III su 97.0 0.002 4.3E-08 66.2 7.8 53 196-251 17-70 (351)
187 KOG2004 Mitochondrial ATP-depe 97.0 0.0009 2E-08 73.5 5.4 107 216-373 428-534 (906)
188 PRK05342 clpX ATP-dependent pr 97.0 0.0013 2.8E-08 69.1 6.4 25 226-250 108-132 (412)
189 PF13191 AAA_16: AAA ATPase do 97.0 0.0035 7.5E-08 56.7 8.3 34 220-253 18-51 (185)
190 PRK11823 DNA repair protein Ra 97.0 0.0042 9.1E-08 65.8 10.0 55 208-263 60-116 (446)
191 CHL00181 cbbX CbbX; Provisiona 97.0 0.008 1.7E-07 60.1 11.5 29 222-250 55-83 (287)
192 TIGR03015 pepcterm_ATPase puta 96.9 0.0094 2E-07 57.7 11.6 25 226-250 43-67 (269)
193 PTZ00035 Rad51 protein; Provis 96.9 0.0049 1.1E-07 63.0 10.0 46 206-251 96-143 (337)
194 PRK05642 DNA replication initi 96.9 0.0027 5.9E-08 61.4 7.7 24 227-250 46-69 (234)
195 COG1474 CDC6 Cdc6-related prot 96.9 0.0038 8.3E-08 64.5 9.0 103 219-343 35-138 (366)
196 PRK08939 primosomal protein Dn 96.9 0.0018 3.9E-08 65.4 6.2 28 225-252 155-182 (306)
197 PRK07471 DNA polymerase III su 96.8 0.0028 6.1E-08 65.5 7.4 53 196-251 13-66 (365)
198 KOG0651 26S proteasome regulat 96.8 0.0013 2.7E-08 66.4 4.6 50 228-277 168-217 (388)
199 PHA00729 NTP-binding motif con 96.8 0.0021 4.5E-08 62.2 6.0 24 227-250 18-41 (226)
200 PLN03186 DNA repair protein RA 96.8 0.0092 2E-07 61.2 11.0 124 207-342 102-232 (342)
201 PF05673 DUF815: Protein of un 96.8 0.0028 6.1E-08 62.0 6.8 63 189-251 14-77 (249)
202 KOG0730 AAA+-type ATPase [Post 96.8 0.001 2.2E-08 72.5 4.0 37 217-253 457-495 (693)
203 PRK03992 proteasome-activating 96.8 0.0019 4.2E-08 67.1 6.0 24 227-250 166-189 (389)
204 PRK12422 chromosomal replicati 96.8 0.0022 4.8E-08 67.9 6.5 25 227-251 142-166 (445)
205 CHL00095 clpC Clp protease ATP 96.8 0.0015 3.3E-08 74.0 5.6 28 224-251 198-225 (821)
206 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0018 3.9E-08 70.1 5.6 29 229-257 226-254 (802)
207 COG0593 DnaA ATPase involved i 96.8 0.0033 7E-08 65.8 7.1 78 225-343 112-190 (408)
208 KOG4658 Apoptotic ATPase [Sign 96.8 0.0035 7.7E-08 71.6 8.1 64 215-280 169-234 (889)
209 PRK08058 DNA polymerase III su 96.7 0.0018 3.9E-08 65.8 5.1 46 202-250 5-52 (329)
210 COG0563 Adk Adenylate kinase a 96.7 0.0061 1.3E-07 56.8 8.1 99 227-352 1-101 (178)
211 PTZ00454 26S protease regulato 96.7 0.0016 3.5E-08 68.0 4.4 26 225-250 178-203 (398)
212 TIGR00416 sms DNA repair prote 96.7 0.0061 1.3E-07 64.8 8.6 55 208-263 74-130 (454)
213 PRK09519 recA DNA recombinatio 96.7 0.0055 1.2E-07 68.9 8.6 110 208-341 39-151 (790)
214 PRK05707 DNA polymerase III su 96.7 0.0079 1.7E-07 61.3 9.0 28 224-251 19-47 (328)
215 PRK07952 DNA replication prote 96.6 0.0074 1.6E-07 59.1 8.4 26 227-252 100-125 (244)
216 PF01637 Arch_ATPase: Archaeal 96.6 0.0011 2.5E-08 61.5 2.6 34 217-250 11-44 (234)
217 TIGR02688 conserved hypothetic 96.6 0.0064 1.4E-07 63.9 8.1 46 223-278 206-251 (449)
218 TIGR01242 26Sp45 26S proteasom 96.6 0.0016 3.5E-08 66.8 3.4 25 226-250 156-180 (364)
219 TIGR02880 cbbX_cfxQ probable R 96.6 0.017 3.6E-07 57.6 10.4 139 225-378 57-210 (284)
220 TIGR01241 FtsH_fam ATP-depende 96.5 0.0015 3.2E-08 69.9 2.9 24 227-250 89-112 (495)
221 KOG0727 26S proteasome regulat 96.5 0.0023 4.9E-08 63.1 3.7 30 223-252 186-215 (408)
222 PF00154 RecA: recA bacterial 96.5 0.011 2.3E-07 60.3 8.7 108 208-340 32-143 (322)
223 TIGR02239 recomb_RAD51 DNA rep 96.5 0.02 4.3E-07 58.1 10.5 44 208-251 76-121 (316)
224 PRK11034 clpA ATP-dependent Cl 96.5 0.0043 9.3E-08 69.8 6.1 28 224-251 205-232 (758)
225 PF08423 Rad51: Rad51; InterP 96.4 0.018 3.9E-07 56.6 9.7 127 205-343 15-148 (256)
226 CHL00195 ycf46 Ycf46; Provisio 96.4 0.0036 7.8E-08 67.1 5.1 25 226-250 259-283 (489)
227 TIGR01243 CDC48 AAA family ATP 96.4 0.0038 8.2E-08 70.0 5.4 27 224-250 210-236 (733)
228 TIGR00763 lon ATP-dependent pr 96.4 0.0036 7.9E-08 70.6 5.1 29 223-251 344-372 (775)
229 TIGR00382 clpX endopeptidase C 96.4 0.0055 1.2E-07 64.4 6.0 25 226-250 116-140 (413)
230 cd00046 DEXDc DEAD-like helica 96.4 0.015 3.2E-07 48.6 7.5 25 228-252 2-26 (144)
231 PF04665 Pox_A32: Poxvirus A32 96.4 0.013 2.9E-07 57.3 8.2 29 226-254 13-41 (241)
232 PRK08116 hypothetical protein; 96.4 0.0057 1.2E-07 60.5 5.7 26 227-252 115-140 (268)
233 PRK10787 DNA-binding ATP-depen 96.3 0.0027 5.8E-08 71.7 3.6 27 224-250 347-373 (784)
234 COG0464 SpoVK ATPases of the A 96.3 0.0044 9.5E-08 66.1 5.1 26 225-250 275-300 (494)
235 KOG0738 AAA+-type ATPase [Post 96.3 0.0025 5.3E-08 66.0 2.9 25 227-251 246-270 (491)
236 CHL00176 ftsH cell division pr 96.3 0.0038 8.2E-08 69.0 4.5 23 228-250 218-240 (638)
237 PRK06835 DNA replication prote 96.3 0.011 2.4E-07 60.3 7.4 36 215-252 174-209 (329)
238 KOG0733 Nuclear AAA ATPase (VC 96.3 0.0089 1.9E-07 64.9 6.9 26 226-251 545-570 (802)
239 PF00910 RNA_helicase: RNA hel 96.3 0.01 2.3E-07 50.2 6.0 24 229-252 1-24 (107)
240 PRK13531 regulatory ATPase Rav 96.2 0.0051 1.1E-07 65.7 4.8 36 215-250 27-63 (498)
241 COG0470 HolB ATPase involved i 96.2 0.021 4.5E-07 56.5 8.8 57 224-280 21-100 (325)
242 KOG0991 Replication factor C, 96.2 0.0058 1.3E-07 59.7 4.5 55 193-250 18-72 (333)
243 COG2812 DnaX DNA polymerase II 96.2 0.0031 6.7E-08 67.8 2.9 54 195-251 9-63 (515)
244 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.03 6.5E-07 54.0 8.9 38 216-253 21-58 (222)
245 PF13207 AAA_17: AAA domain; P 96.1 0.005 1.1E-07 52.2 3.1 23 228-250 1-23 (121)
246 cd00984 DnaB_C DnaB helicase C 96.0 0.01 2.3E-07 56.6 5.6 48 223-270 10-57 (242)
247 KOG0739 AAA+-type ATPase [Post 96.0 0.0036 7.8E-08 62.9 2.3 22 228-249 168-189 (439)
248 COG0466 Lon ATP-dependent Lon 96.0 0.0034 7.4E-08 69.1 2.4 38 217-254 341-378 (782)
249 cd03115 SRP The signal recogni 96.0 0.15 3.2E-06 46.3 12.8 43 229-272 3-45 (173)
250 PF13481 AAA_25: AAA domain; P 96.0 0.024 5.2E-07 52.0 7.7 29 224-252 30-58 (193)
251 cd00227 CPT Chloramphenicol (C 96.0 0.042 9.1E-07 50.3 9.1 26 225-250 1-26 (175)
252 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.2 4.2E-06 46.1 13.3 119 227-356 3-128 (159)
253 COG1124 DppF ABC-type dipeptid 96.0 0.0056 1.2E-07 59.8 3.2 28 221-248 28-55 (252)
254 TIGR01618 phage_P_loop phage n 95.9 0.02 4.3E-07 55.3 6.9 21 227-247 13-33 (220)
255 TIGR01243 CDC48 AAA family ATP 95.9 0.0082 1.8E-07 67.3 4.9 24 227-250 488-511 (733)
256 PF13086 AAA_11: AAA domain; P 95.9 0.012 2.6E-07 54.6 5.3 51 228-279 19-75 (236)
257 PRK14974 cell division protein 95.9 0.062 1.3E-06 55.1 10.8 28 224-251 138-165 (336)
258 cd00544 CobU Adenosylcobinamid 95.9 0.028 6.2E-07 51.9 7.6 88 229-345 2-90 (169)
259 PF12775 AAA_7: P-loop contain 95.9 0.015 3.2E-07 57.8 5.9 32 216-249 25-56 (272)
260 PTZ00112 origin recognition co 95.9 0.034 7.5E-07 63.2 9.3 50 229-279 784-839 (1164)
261 PRK06871 DNA polymerase III su 95.8 0.052 1.1E-06 55.4 9.5 33 219-251 16-49 (325)
262 PRK05986 cob(I)alamin adenolsy 95.7 0.41 8.8E-06 45.4 14.5 121 225-356 21-148 (191)
263 PRK14722 flhF flagellar biosyn 95.7 0.056 1.2E-06 56.2 9.5 44 209-252 119-163 (374)
264 COG4088 Predicted nucleotide k 95.7 0.047 1E-06 52.6 8.0 24 229-252 4-27 (261)
265 PRK07261 topology modulation p 95.7 0.017 3.6E-07 53.2 4.9 24 227-250 1-24 (171)
266 PF07728 AAA_5: AAA domain (dy 95.6 0.023 4.9E-07 49.6 5.5 22 229-250 2-23 (139)
267 PRK11331 5-methylcytosine-spec 95.6 0.034 7.4E-07 59.0 7.7 27 224-250 192-218 (459)
268 cd03222 ABC_RNaseL_inhibitor T 95.5 0.013 2.8E-07 54.5 3.8 35 215-249 14-48 (177)
269 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.041 9E-07 52.5 7.3 25 226-250 29-53 (213)
270 COG0468 RecA RecA/RadA recombi 95.5 0.088 1.9E-06 52.6 9.8 112 207-341 39-154 (279)
271 KOG0743 AAA+-type ATPase [Post 95.5 0.023 4.9E-07 59.9 5.8 62 187-250 186-259 (457)
272 PLN03210 Resistant to P. syrin 95.5 0.046 9.9E-07 64.4 9.0 39 222-261 203-241 (1153)
273 KOG0735 AAA+-type ATPase [Post 95.5 0.051 1.1E-06 60.2 8.5 48 218-265 423-470 (952)
274 COG1116 TauB ABC-type nitrate/ 95.5 0.012 2.6E-07 57.6 3.4 34 214-247 16-50 (248)
275 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.07 1.5E-06 50.7 8.5 33 218-250 21-53 (204)
276 KOG0737 AAA+-type ATPase [Post 95.4 0.014 3E-07 60.0 4.0 37 227-263 128-164 (386)
277 TIGR00665 DnaB replicative DNA 95.4 0.022 4.7E-07 59.7 5.6 63 208-270 176-239 (434)
278 PF07088 GvpD: GvpD gas vesicl 95.4 0.027 5.9E-07 58.7 5.9 37 218-254 2-38 (484)
279 TIGR00390 hslU ATP-dependent p 95.4 0.023 5E-07 59.8 5.5 54 227-280 48-103 (441)
280 PRK00889 adenylylsulfate kinas 95.4 0.16 3.6E-06 46.1 10.5 27 225-251 3-29 (175)
281 PF13238 AAA_18: AAA domain; P 95.3 0.013 2.9E-07 49.5 3.0 21 229-249 1-21 (129)
282 TIGR02903 spore_lon_C ATP-depe 95.3 0.0091 2E-07 65.8 2.4 53 195-250 147-199 (615)
283 PRK10416 signal recognition pa 95.3 0.19 4E-06 51.2 11.6 29 224-252 112-140 (318)
284 PRK07993 DNA polymerase III su 95.3 0.092 2E-06 53.7 9.4 28 223-250 20-48 (334)
285 KOG1969 DNA replication checkp 95.3 0.043 9.2E-07 60.9 7.1 37 229-270 329-367 (877)
286 COG1066 Sms Predicted ATP-depe 95.3 0.045 9.9E-07 57.2 7.0 54 209-265 74-129 (456)
287 PRK05800 cobU adenosylcobinami 95.2 0.026 5.7E-07 52.1 4.8 35 228-266 3-37 (170)
288 PF03796 DnaB_C: DnaB-like hel 95.2 0.027 5.8E-07 54.8 5.0 60 210-269 2-62 (259)
289 cd00820 PEPCK_HprK Phosphoenol 95.2 0.016 3.6E-07 49.8 3.1 27 221-247 10-36 (107)
290 PRK08699 DNA polymerase III su 95.2 0.083 1.8E-06 53.8 8.7 25 226-250 21-45 (325)
291 KOG0744 AAA+-type ATPase [Post 95.2 0.04 8.7E-07 56.1 6.2 22 229-250 180-201 (423)
292 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.2 0.016 3.5E-07 54.5 3.3 29 221-249 25-53 (218)
293 TIGR01166 cbiO cobalt transpor 95.2 0.017 3.6E-07 53.4 3.3 29 221-249 13-41 (190)
294 PRK06620 hypothetical protein; 95.2 0.015 3.3E-07 55.6 3.1 22 227-248 45-66 (214)
295 cd03286 ABC_MSH6_euk MutS6 hom 95.1 0.14 3.1E-06 49.2 9.6 34 218-251 22-55 (218)
296 KOG0740 AAA+-type ATPase [Post 95.1 0.016 3.5E-07 60.9 3.4 24 228-251 188-211 (428)
297 COG1219 ClpX ATP-dependent pro 95.1 0.026 5.7E-07 57.3 4.6 78 227-343 98-177 (408)
298 PF00005 ABC_tran: ABC transpo 95.1 0.014 3E-07 50.6 2.4 28 221-248 6-33 (137)
299 cd03269 ABC_putative_ATPase Th 95.1 0.018 3.9E-07 54.0 3.3 28 221-248 21-48 (210)
300 PRK14530 adenylate kinase; Pro 95.1 0.02 4.3E-07 54.2 3.6 26 225-250 2-27 (215)
301 PRK12724 flagellar biosynthesi 95.1 0.11 2.3E-06 55.0 9.2 27 224-250 221-247 (432)
302 cd03225 ABC_cobalt_CbiO_domain 95.1 0.019 4E-07 53.9 3.3 29 221-249 22-50 (211)
303 TIGR02315 ABC_phnC phosphonate 95.1 0.018 4E-07 55.1 3.3 29 221-249 23-51 (243)
304 TIGR03608 L_ocin_972_ABC putat 95.0 0.019 4E-07 53.6 3.2 29 221-249 19-47 (206)
305 cd03260 ABC_PstB_phosphate_tra 95.0 0.019 4.2E-07 54.5 3.3 30 221-250 21-50 (227)
306 COG3842 PotA ABC-type spermidi 95.0 0.018 3.9E-07 59.3 3.3 35 213-247 17-52 (352)
307 cd03292 ABC_FtsE_transporter F 95.0 0.019 4.2E-07 53.8 3.3 29 221-249 22-50 (214)
308 PRK05201 hslU ATP-dependent pr 95.0 0.029 6.2E-07 59.2 4.8 55 226-280 50-106 (443)
309 TIGR00064 ftsY signal recognit 95.0 0.25 5.5E-06 49.0 11.3 30 223-252 69-98 (272)
310 TIGR00960 3a0501s02 Type II (G 95.0 0.02 4.4E-07 53.9 3.3 29 221-249 24-52 (216)
311 COG3854 SpoIIIAA ncharacterize 95.0 0.027 5.9E-07 55.0 4.1 29 224-252 134-163 (308)
312 cd03254 ABCC_Glucan_exporter_l 95.0 0.02 4.4E-07 54.3 3.3 29 221-249 24-52 (229)
313 COG3839 MalK ABC-type sugar tr 95.0 0.019 4.1E-07 58.8 3.3 29 219-247 22-50 (338)
314 cd03262 ABC_HisP_GlnQ_permease 95.0 0.021 4.5E-07 53.5 3.3 29 221-249 21-49 (213)
315 PF08433 KTI12: Chromatin asso 95.0 0.023 5E-07 56.5 3.7 24 229-252 4-27 (270)
316 cd03229 ABC_Class3 This class 94.9 0.022 4.7E-07 52.3 3.3 29 221-249 21-49 (178)
317 TIGR02211 LolD_lipo_ex lipopro 94.9 0.021 4.5E-07 53.9 3.3 29 221-249 26-54 (221)
318 cd03238 ABC_UvrA The excision 94.9 0.021 4.6E-07 53.0 3.2 27 221-247 16-42 (176)
319 cd03224 ABC_TM1139_LivF_branch 94.9 0.02 4.3E-07 54.0 3.1 29 221-249 21-49 (222)
320 PRK14531 adenylate kinase; Pro 94.9 0.022 4.8E-07 52.6 3.4 24 227-250 3-26 (183)
321 cd03243 ABC_MutS_homologs The 94.9 0.061 1.3E-06 50.4 6.3 30 221-250 24-53 (202)
322 PF09848 DUF2075: Uncharacteri 94.9 0.093 2E-06 53.7 8.1 23 228-250 3-25 (352)
323 cd01125 repA Hexameric Replica 94.9 0.2 4.4E-06 48.1 10.0 27 226-252 1-27 (239)
324 PF13521 AAA_28: AAA domain; P 94.9 0.018 3.9E-07 51.9 2.5 22 228-249 1-22 (163)
325 cd03256 ABC_PhnC_transporter A 94.9 0.022 4.8E-07 54.4 3.3 29 221-249 22-50 (241)
326 PRK04841 transcriptional regul 94.9 0.1 2.2E-06 59.1 9.2 59 217-280 23-81 (903)
327 KOG0734 AAA+-type ATPase conta 94.9 0.035 7.5E-07 59.7 4.9 21 229-249 340-360 (752)
328 cd03226 ABC_cobalt_CbiO_domain 94.9 0.022 4.8E-07 53.2 3.2 29 221-249 21-49 (205)
329 PRK05748 replicative DNA helic 94.9 0.037 8E-07 58.5 5.2 62 208-269 184-246 (448)
330 COG4619 ABC-type uncharacteriz 94.8 0.023 5E-07 53.1 3.2 36 214-249 16-52 (223)
331 cd03258 ABC_MetN_methionine_tr 94.8 0.023 5E-07 54.1 3.3 29 221-249 26-54 (233)
332 PF13671 AAA_33: AAA domain; P 94.8 0.023 4.9E-07 49.4 3.0 21 229-249 2-22 (143)
333 TIGR02673 FtsE cell division A 94.8 0.024 5.1E-07 53.3 3.3 28 221-248 23-50 (214)
334 PRK11124 artP arginine transpo 94.8 0.023 5.1E-07 54.5 3.3 29 221-249 23-51 (242)
335 TIGR03499 FlhF flagellar biosy 94.8 0.1 2.2E-06 51.9 8.0 30 224-253 192-221 (282)
336 PRK09087 hypothetical protein; 94.8 0.067 1.5E-06 51.6 6.5 24 226-249 44-67 (226)
337 PRK13540 cytochrome c biogenes 94.8 0.024 5.3E-07 52.9 3.3 28 221-248 22-49 (200)
338 cd03257 ABC_NikE_OppD_transpor 94.8 0.023 5E-07 53.7 3.2 29 221-249 26-54 (228)
339 TIGR00708 cobA cob(I)alamin ad 94.8 0.31 6.7E-06 45.5 10.5 118 227-356 6-130 (173)
340 TIGR00455 apsK adenylylsulfate 94.8 0.28 6E-06 45.1 10.2 27 224-250 16-42 (184)
341 cd03296 ABC_CysA_sulfate_impor 94.8 0.025 5.3E-07 54.3 3.3 29 221-249 23-51 (239)
342 cd03259 ABC_Carb_Solutes_like 94.8 0.025 5.4E-07 53.1 3.3 29 221-249 21-49 (213)
343 TIGR03410 urea_trans_UrtE urea 94.8 0.025 5.4E-07 53.8 3.3 30 220-249 20-49 (230)
344 cd03235 ABC_Metallic_Cations A 94.7 0.023 5E-07 53.4 3.0 28 221-248 20-47 (213)
345 cd03265 ABC_DrrA DrrA is the A 94.7 0.026 5.6E-07 53.4 3.4 28 221-248 21-48 (220)
346 PRK14247 phosphate ABC transpo 94.7 0.025 5.4E-07 54.6 3.3 29 221-249 24-52 (250)
347 cd03218 ABC_YhbG The ABC trans 94.7 0.025 5.5E-07 53.7 3.3 29 221-249 21-49 (232)
348 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.025 5.4E-07 53.5 3.1 29 221-249 25-53 (220)
349 cd03219 ABC_Mj1267_LivG_branch 94.7 0.024 5.2E-07 54.1 3.0 29 221-249 21-49 (236)
350 PRK13539 cytochrome c biogenes 94.7 0.027 5.8E-07 53.0 3.3 29 221-249 23-51 (207)
351 TIGR01978 sufC FeS assembly AT 94.7 0.026 5.6E-07 54.0 3.3 28 221-248 21-48 (243)
352 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.026 5.7E-07 54.0 3.3 28 221-248 22-49 (236)
353 PRK00131 aroK shikimate kinase 94.7 0.031 6.6E-07 50.1 3.5 26 225-250 3-28 (175)
354 cd03301 ABC_MalK_N The N-termi 94.7 0.027 5.9E-07 52.8 3.3 29 221-249 21-49 (213)
355 PRK05541 adenylylsulfate kinas 94.7 0.056 1.2E-06 49.3 5.3 30 222-251 3-32 (176)
356 PRK10733 hflB ATP-dependent me 94.7 0.03 6.6E-07 62.0 4.1 22 229-250 188-209 (644)
357 PRK13541 cytochrome c biogenes 94.6 0.028 6.1E-07 52.3 3.3 32 218-249 18-49 (195)
358 TIGR03600 phage_DnaB phage rep 94.6 0.05 1.1E-06 56.9 5.5 56 209-264 176-232 (421)
359 cd03216 ABC_Carb_Monos_I This 94.6 0.028 6.1E-07 51.0 3.2 29 221-249 21-49 (163)
360 cd03266 ABC_NatA_sodium_export 94.6 0.028 6E-07 53.0 3.3 29 221-249 26-54 (218)
361 cd03245 ABCC_bacteriocin_expor 94.6 0.028 6E-07 53.0 3.3 29 221-249 25-53 (220)
362 KOG0729 26S proteasome regulat 94.6 0.086 1.9E-06 52.6 6.7 36 224-264 209-244 (435)
363 cd03247 ABCC_cytochrome_bd The 94.6 0.029 6.3E-07 51.4 3.3 29 221-249 23-51 (178)
364 PRK07399 DNA polymerase III su 94.6 0.085 1.8E-06 53.5 6.9 47 201-250 3-50 (314)
365 cd03251 ABCC_MsbA MsbA is an e 94.6 0.029 6.3E-07 53.4 3.3 29 221-249 23-51 (234)
366 TIGR02902 spore_lonB ATP-depen 94.6 0.018 3.9E-07 62.3 2.1 52 195-249 58-109 (531)
367 PRK11248 tauB taurine transpor 94.6 0.029 6.2E-07 54.7 3.3 29 221-249 22-50 (255)
368 cd03246 ABCC_Protease_Secretio 94.6 0.032 6.8E-07 51.0 3.4 29 221-249 23-51 (173)
369 COG1126 GlnQ ABC-type polar am 94.6 0.036 7.8E-07 53.6 3.8 26 221-246 23-48 (240)
370 PRK10895 lipopolysaccharide AB 94.6 0.03 6.4E-07 53.8 3.3 29 221-249 24-52 (241)
371 cd03230 ABC_DR_subfamily_A Thi 94.5 0.031 6.7E-07 51.1 3.3 29 221-249 21-49 (173)
372 cd03261 ABC_Org_Solvent_Resist 94.5 0.031 6.6E-07 53.4 3.3 29 221-249 21-49 (235)
373 PRK13543 cytochrome c biogenes 94.5 0.03 6.6E-07 52.9 3.3 28 221-248 32-59 (214)
374 KOG0745 Putative ATP-dependent 94.5 0.038 8.1E-07 58.2 4.1 102 227-373 227-330 (564)
375 cd03215 ABC_Carb_Monos_II This 94.5 0.031 6.7E-07 51.5 3.2 29 221-249 21-49 (182)
376 PRK10584 putative ABC transpor 94.5 0.031 6.8E-07 53.0 3.3 29 221-249 31-59 (228)
377 cd03295 ABC_OpuCA_Osmoprotecti 94.5 0.031 6.8E-07 53.7 3.4 28 221-248 22-49 (242)
378 cd03298 ABC_ThiQ_thiamine_tran 94.5 0.036 7.8E-07 52.0 3.7 32 218-249 16-47 (211)
379 cd03250 ABCC_MRP_domain1 Domai 94.5 0.032 6.9E-07 52.1 3.3 30 221-250 26-55 (204)
380 PRK03839 putative kinase; Prov 94.5 0.032 7E-07 51.1 3.3 24 228-251 2-25 (180)
381 PRK12727 flagellar biosynthesi 94.5 0.13 2.7E-06 55.9 8.1 33 222-254 346-378 (559)
382 PRK11144 modC molybdate transp 94.5 0.035 7.5E-07 56.9 3.8 32 217-248 15-46 (352)
383 PF00448 SRP54: SRP54-type pro 94.5 0.53 1.2E-05 44.4 11.6 27 227-253 2-28 (196)
384 cd03263 ABC_subfamily_A The AB 94.5 0.032 6.9E-07 52.6 3.3 29 221-249 23-51 (220)
385 PRK10771 thiQ thiamine transpo 94.5 0.031 6.7E-07 53.4 3.2 31 218-248 17-47 (232)
386 cd01428 ADK Adenylate kinase ( 94.5 0.031 6.7E-07 51.2 3.1 22 228-249 1-22 (194)
387 PRK03846 adenylylsulfate kinas 94.5 0.21 4.5E-06 46.7 8.8 27 224-250 22-48 (198)
388 PF13245 AAA_19: Part of AAA d 94.5 0.063 1.4E-06 43.1 4.5 26 226-251 10-35 (76)
389 PRK14255 phosphate ABC transpo 94.5 0.032 6.9E-07 53.9 3.3 28 221-248 26-53 (252)
390 PRK11264 putative amino-acid A 94.4 0.032 7E-07 53.7 3.3 29 221-249 24-52 (250)
391 cd03252 ABCC_Hemolysin The ABC 94.4 0.032 6.9E-07 53.3 3.3 29 221-249 23-51 (237)
392 cd03268 ABC_BcrA_bacitracin_re 94.4 0.033 7.2E-07 52.1 3.3 29 221-249 21-49 (208)
393 PRK14274 phosphate ABC transpo 94.4 0.033 7.1E-07 54.1 3.3 29 221-249 33-61 (259)
394 PRK09493 glnQ glutamine ABC tr 94.4 0.033 7.2E-07 53.4 3.3 29 221-249 22-50 (240)
395 cd03214 ABC_Iron-Siderophores_ 94.4 0.035 7.6E-07 51.0 3.3 29 221-249 20-48 (180)
396 TIGR02640 gas_vesic_GvpN gas v 94.4 0.031 6.6E-07 54.9 3.1 27 224-250 19-45 (262)
397 PF08477 Miro: Miro-like prote 94.4 0.038 8.2E-07 46.4 3.2 22 228-249 1-22 (119)
398 COG1125 OpuBA ABC-type proline 94.4 0.067 1.5E-06 53.0 5.3 62 213-275 13-75 (309)
399 cd03223 ABCD_peroxisomal_ALDP 94.4 0.036 7.8E-07 50.5 3.3 29 221-249 22-50 (166)
400 TIGR02770 nickel_nikD nickel i 94.4 0.033 7.2E-07 53.2 3.2 29 221-249 7-35 (230)
401 PRK14267 phosphate ABC transpo 94.4 0.034 7.4E-07 53.7 3.3 29 221-249 25-53 (253)
402 TIGR03005 ectoine_ehuA ectoine 94.4 0.034 7.3E-07 53.8 3.3 29 221-249 21-49 (252)
403 PRK14250 phosphate ABC transpo 94.4 0.034 7.4E-07 53.5 3.3 30 220-249 23-52 (241)
404 PRK11629 lolD lipoprotein tran 94.4 0.035 7.5E-07 53.1 3.3 28 221-248 30-57 (233)
405 TIGR03263 guanyl_kin guanylate 94.4 0.032 6.9E-07 50.8 2.9 24 226-249 1-24 (180)
406 cd03283 ABC_MutS-like MutS-lik 94.4 0.32 7E-06 45.9 9.8 28 223-250 22-49 (199)
407 cd04155 Arl3 Arl3 subfamily. 94.3 0.029 6.3E-07 50.1 2.6 33 216-248 4-36 (173)
408 cd03248 ABCC_TAP TAP, the Tran 94.3 0.036 7.8E-07 52.6 3.3 29 221-249 35-63 (226)
409 PRK10908 cell division protein 94.3 0.036 7.8E-07 52.5 3.3 28 221-248 23-50 (222)
410 PRK14262 phosphate ABC transpo 94.3 0.035 7.6E-07 53.5 3.3 28 221-248 24-51 (250)
411 PRK15177 Vi polysaccharide exp 94.3 0.035 7.7E-07 52.6 3.3 29 221-249 8-36 (213)
412 PRK10247 putative ABC transpor 94.3 0.037 7.9E-07 52.7 3.4 29 221-249 28-56 (225)
413 PRK08769 DNA polymerase III su 94.3 0.12 2.6E-06 52.6 7.3 28 223-250 22-50 (319)
414 COG2607 Predicted ATPase (AAA+ 94.3 0.11 2.5E-06 50.9 6.7 27 226-252 85-111 (287)
415 TIGR03411 urea_trans_UrtD urea 94.3 0.035 7.6E-07 53.2 3.3 29 221-249 23-51 (242)
416 TIGR01184 ntrCD nitrate transp 94.3 0.036 7.8E-07 53.0 3.3 29 221-249 6-34 (230)
417 TIGR02322 phosphon_PhnN phosph 94.3 0.039 8.5E-07 50.3 3.4 25 226-250 1-25 (179)
418 PRK14532 adenylate kinase; Pro 94.3 0.037 7.9E-07 51.0 3.2 22 228-249 2-23 (188)
419 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.3 0.035 7.6E-07 53.1 3.2 30 220-249 23-52 (238)
420 PRK14242 phosphate transporter 94.3 0.035 7.6E-07 53.6 3.3 29 221-249 27-55 (253)
421 PRK11247 ssuB aliphatic sulfon 94.3 0.036 7.7E-07 54.3 3.3 29 221-249 33-61 (257)
422 cd03231 ABC_CcmA_heme_exporter 94.3 0.037 8E-07 51.8 3.3 29 221-249 21-49 (201)
423 TIGR02323 CP_lyasePhnK phospho 94.3 0.035 7.6E-07 53.6 3.2 29 221-249 24-52 (253)
424 PRK14256 phosphate ABC transpo 94.3 0.037 7.9E-07 53.5 3.3 29 221-249 25-53 (252)
425 PRK11432 fbpC ferric transport 94.3 0.035 7.6E-07 57.1 3.3 27 221-247 27-53 (351)
426 COG4525 TauB ABC-type taurine 94.3 0.038 8.3E-07 52.9 3.3 28 220-247 25-52 (259)
427 PRK11701 phnK phosphonate C-P 94.3 0.036 7.7E-07 53.9 3.2 30 220-249 26-55 (258)
428 TIGR01360 aden_kin_iso1 adenyl 94.3 0.044 9.6E-07 49.9 3.6 25 225-249 2-26 (188)
429 PRK06217 hypothetical protein; 94.2 0.039 8.5E-07 50.9 3.3 24 227-250 2-25 (183)
430 TIGR03740 galliderm_ABC gallid 94.2 0.039 8.5E-07 52.3 3.3 29 221-249 21-49 (223)
431 cd03290 ABCC_SUR1_N The SUR do 94.2 0.039 8.5E-07 52.1 3.3 29 221-249 22-50 (218)
432 cd03228 ABCC_MRP_Like The MRP 94.2 0.042 9E-07 50.1 3.4 29 221-249 23-51 (171)
433 PRK14241 phosphate transporter 94.2 0.038 8.2E-07 53.7 3.2 29 221-249 25-53 (258)
434 COG1373 Predicted ATPase (AAA+ 94.2 0.14 3E-06 53.7 7.6 23 228-250 39-61 (398)
435 PRK10575 iron-hydroxamate tran 94.2 0.035 7.7E-07 54.2 3.1 28 221-248 32-59 (265)
436 cd03236 ABC_RNaseL_inhibitor_d 94.2 0.041 8.8E-07 54.0 3.4 34 216-249 16-49 (255)
437 cd03233 ABC_PDR_domain1 The pl 94.2 0.035 7.7E-07 52.1 2.9 29 221-249 28-56 (202)
438 cd02027 APSK Adenosine 5'-phos 94.2 0.26 5.6E-06 44.2 8.4 23 229-251 2-24 (149)
439 PRK14240 phosphate transporter 94.2 0.04 8.6E-07 53.2 3.3 30 219-248 22-51 (250)
440 PRK14248 phosphate ABC transpo 94.2 0.04 8.6E-07 53.9 3.3 28 221-248 42-69 (268)
441 PTZ00088 adenylate kinase 1; P 94.2 0.047 1E-06 52.9 3.7 26 225-250 5-30 (229)
442 PRK13538 cytochrome c biogenes 94.2 0.041 8.9E-07 51.5 3.3 29 221-249 22-50 (204)
443 PRK13548 hmuV hemin importer A 94.2 0.039 8.4E-07 53.8 3.2 29 221-249 23-51 (258)
444 PRK00300 gmk guanylate kinase; 94.1 0.043 9.4E-07 51.1 3.4 26 224-249 3-28 (205)
445 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.043 9.2E-07 51.4 3.3 29 221-249 29-57 (207)
446 PRK11650 ugpC glycerol-3-phosp 94.1 0.038 8.3E-07 56.8 3.3 29 220-248 24-52 (356)
447 TIGR01189 ccmA heme ABC export 94.1 0.043 9.3E-07 51.1 3.3 29 221-249 21-49 (198)
448 TIGR03771 anch_rpt_ABC anchore 94.1 0.042 9.2E-07 52.3 3.3 28 222-249 2-29 (223)
449 PF03308 ArgK: ArgK protein; 94.1 0.061 1.3E-06 53.2 4.4 38 215-252 17-55 (266)
450 cd03213 ABCG_EPDR ABCG transpo 94.1 0.041 9E-07 51.3 3.2 29 221-249 30-58 (194)
451 PRK10078 ribose 1,5-bisphospho 94.1 0.042 9.1E-07 50.8 3.2 25 225-249 1-25 (186)
452 cd03267 ABC_NatA_like Similar 94.1 0.041 8.9E-07 52.8 3.3 29 221-249 42-70 (236)
453 TIGR00972 3a0107s01c2 phosphat 94.1 0.042 9.1E-07 53.0 3.3 29 221-249 22-50 (247)
454 TIGR00968 3a0106s01 sulfate AB 94.1 0.042 9.2E-07 52.7 3.3 29 221-249 21-49 (237)
455 cd03253 ABCC_ATM1_transporter 94.1 0.042 9.2E-07 52.4 3.3 29 221-249 22-50 (236)
456 PRK14273 phosphate ABC transpo 94.1 0.042 9.2E-07 53.2 3.3 29 221-249 28-56 (254)
457 PRK10253 iron-enterobactin tra 94.1 0.039 8.4E-07 54.0 3.1 29 221-249 28-56 (265)
458 cd03264 ABC_drug_resistance_li 94.1 0.041 8.8E-07 51.6 3.1 27 221-248 21-47 (211)
459 PRK14239 phosphate transporter 94.1 0.042 9E-07 53.0 3.3 28 221-248 26-53 (252)
460 PRK10418 nikD nickel transport 94.1 0.042 9.1E-07 53.3 3.3 29 221-249 24-52 (254)
461 PRK08233 hypothetical protein; 94.1 0.046 1E-06 49.5 3.4 25 226-250 3-27 (182)
462 PRK09544 znuC high-affinity zi 94.1 0.042 9.2E-07 53.5 3.3 29 221-249 25-53 (251)
463 TIGR02324 CP_lyasePhnL phospho 94.1 0.044 9.4E-07 51.9 3.3 29 221-249 29-57 (224)
464 KOG0726 26S proteasome regulat 94.1 0.025 5.4E-07 56.9 1.6 25 227-251 220-244 (440)
465 PF07726 AAA_3: ATPase family 94.1 0.02 4.4E-07 50.9 0.9 24 229-252 2-25 (131)
466 PRK11300 livG leucine/isoleuci 94.1 0.041 8.8E-07 53.2 3.1 29 221-249 26-54 (255)
467 PRK14237 phosphate transporter 94.0 0.044 9.5E-07 53.7 3.4 29 221-249 41-69 (267)
468 PRK11831 putative ABC transpor 94.0 0.042 9.1E-07 53.9 3.2 30 220-249 27-56 (269)
469 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.045 9.7E-07 51.3 3.3 29 221-249 21-49 (200)
470 TIGR03265 PhnT2 putative 2-ami 94.0 0.042 9.1E-07 56.5 3.3 29 220-248 24-52 (353)
471 COG4988 CydD ABC-type transpor 94.0 0.16 3.5E-06 55.1 7.7 121 218-347 339-493 (559)
472 TIGR01313 therm_gnt_kin carboh 94.0 0.041 8.9E-07 49.4 2.9 22 229-250 1-22 (163)
473 TIGR01288 nodI ATP-binding ABC 94.0 0.043 9.3E-07 54.9 3.3 28 221-248 25-52 (303)
474 PRK13648 cbiO cobalt transport 94.0 0.044 9.6E-07 53.7 3.3 29 221-249 30-58 (269)
475 TIGR01277 thiQ thiamine ABC tr 94.0 0.044 9.5E-07 51.6 3.2 32 218-249 16-47 (213)
476 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.045 9.8E-07 49.9 3.1 22 229-250 2-23 (183)
477 PRK15093 antimicrobial peptide 94.0 0.044 9.5E-07 55.7 3.3 35 215-249 21-56 (330)
478 CHL00131 ycf16 sulfate ABC tra 94.0 0.041 8.9E-07 53.0 3.0 28 221-248 28-55 (252)
479 cd03237 ABC_RNaseL_inhibitor_d 94.0 0.046 1E-06 53.2 3.4 28 222-249 21-48 (246)
480 PRK13632 cbiO cobalt transport 94.0 0.045 9.7E-07 53.8 3.3 29 221-249 30-58 (271)
481 TIGR01188 drrA daunorubicin re 94.0 0.045 9.7E-07 54.7 3.4 28 221-248 14-41 (302)
482 PRK10851 sulfate/thiosulfate t 94.0 0.043 9.4E-07 56.4 3.3 28 221-248 23-50 (353)
483 PRK10744 pstB phosphate transp 94.0 0.045 9.8E-07 53.3 3.3 29 221-249 34-62 (260)
484 PRK14272 phosphate ABC transpo 94.0 0.046 1E-06 52.7 3.3 29 221-249 25-53 (252)
485 cd03244 ABCC_MRP_domain2 Domai 94.0 0.048 1E-06 51.5 3.4 29 221-249 25-53 (221)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.047 1E-06 48.6 3.1 29 221-249 21-49 (144)
487 TIGR02769 nickel_nikE nickel i 94.0 0.045 9.8E-07 53.5 3.3 29 221-249 32-60 (265)
488 PRK13645 cbiO cobalt transport 93.9 0.044 9.5E-07 54.4 3.2 29 221-249 32-60 (289)
489 PRK02496 adk adenylate kinase; 93.9 0.049 1.1E-06 50.0 3.3 24 227-250 2-25 (184)
490 PRK14266 phosphate ABC transpo 93.9 0.048 1E-06 52.6 3.4 28 221-248 24-51 (250)
491 COG1127 Ttg2A ABC-type transpo 93.9 0.048 1E-06 53.4 3.3 37 214-250 21-58 (263)
492 PRK13649 cbiO cobalt transport 93.9 0.045 9.7E-07 53.9 3.2 29 221-249 28-56 (280)
493 cd03234 ABCG_White The White s 93.9 0.046 1E-06 51.9 3.2 30 221-250 28-57 (226)
494 PHA02542 41 41 helicase; Provi 93.9 0.071 1.5E-06 57.1 4.9 61 208-269 170-232 (473)
495 PRK13638 cbiO cobalt transport 93.9 0.044 9.6E-07 53.7 3.1 28 221-248 22-49 (271)
496 PF13177 DNA_pol3_delta2: DNA 93.9 0.23 5E-06 45.2 7.6 33 218-250 10-43 (162)
497 cd03232 ABC_PDR_domain2 The pl 93.9 0.047 1E-06 50.8 3.1 27 221-247 28-54 (192)
498 PRK10619 histidine/lysine/argi 93.9 0.048 1E-06 53.0 3.3 29 221-249 26-54 (257)
499 PRK10419 nikE nickel transport 93.9 0.047 1E-06 53.6 3.3 28 221-248 33-60 (268)
500 PRK15056 manganese/iron transp 93.9 0.048 1E-06 53.6 3.3 28 221-248 28-55 (272)
No 1
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9e-94 Score=711.06 Aligned_cols=328 Identities=77% Similarity=1.143 Sum_probs=317.2
Q ss_pred ceeeEEEEECCEEEEEeCC--CCchhhhceEEeeccc-eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcccc
Q 014228 86 AIGQVCQVIGAVVDVRFDE--GLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~--glp~i~~~l~v~~~~~-~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VP 162 (428)
+.|+|+||+|+||||+|++ .+|.|++++++..... ++++||++|+|++.||+|+|+.|+||.+|+.|.+||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 4699999999999999983 4999999999976532 489999999999999999999999999999999999999999
Q ss_pred CCccccceEEEEeccccccCCCCCCc--cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 163 VGRVTLGRIMNVIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 163 VG~~lLGRVlD~lG~PiD~~~~i~~~--~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||+++||||+|++|+|||+.+++..+ ++||||+.+|...+.....|.|+||||+||.|+|+.||+|+||||++|||||
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence 99999999999999999999999866 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
+|++++|+|.++.|.+++||+|+|||+||.+|+|+||.+++++ +++++|++||||||++|++++++|+|+||
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl--------~ktalv~gQMNEpPGaR~RValtGlT~AE 233 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMAE 233 (468)
T ss_pred eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCC--------CceeEEEeecCCCCcceeeehhhhhhHHH
Confidence 9999999999999999999999999999999999999999854 59999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCch
Q 014228 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi 400 (428)
||||++|+|||||+|+|+||.+|.+|+|+||||+||.+||||+|.++++.|+||+.++++||||++|+||+|+||+|||.
T Consensus 234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~GSITSiQavyvPaDDlTDPa 313 (468)
T COG0055 234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPA 313 (468)
T ss_pred HhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcCCCCceEEEEEEEeccccCCCcc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014228 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
|.++|+|||+++||||+||+.
T Consensus 314 pattFaHLDat~vLsR~ia~~ 334 (468)
T COG0055 314 PATTFAHLDATTVLSRQIAAL 334 (468)
T ss_pred hhhhhhhcccceeeeHhHHhc
Confidence 999999999999999999974
No 2
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=8.1e-94 Score=698.53 Aligned_cols=340 Identities=81% Similarity=1.192 Sum_probs=330.5
Q ss_pred ccccCCceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCc
Q 014228 80 EFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (428)
Q Consensus 80 ~~~~~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l 159 (428)
...++++.|+|.+|+|+||||+|++++|+|++++++...+.++++||+||+|+|.||+++|++|+||.+|++|.+||.|+
T Consensus 45 k~~a~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi 124 (521)
T KOG1350|consen 45 KAAAKKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPI 124 (521)
T ss_pred hhhhcccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCce
Confidence 33556678999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred cccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 160 ~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+||||++.||||+|++|+|||+++|++...+.|||..+|.+.+..+.+|.|+||||++|.|.|+.||+++++||++|+||
T Consensus 125 ~ipVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGK 204 (521)
T KOG1350|consen 125 SIPVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 204 (521)
T ss_pred eeecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|+|++++|||.+|+|++++||+|+|||+||.+|+|+||+|.|+|++.+ ..+|..+|+++||+||++|.+++++|+|+|
T Consensus 205 TVlImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~--~~SKvaLV~GQMNePPGARaRV~LTgLTvA 282 (521)
T KOG1350|consen 205 TVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEG--ETSKVALVYGQMNEPPGARARVALTGLTVA 282 (521)
T ss_pred eeeHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccC--CcceEEEEeeccCCCCCceeeeeeecccHH
Confidence 999999999999999999999999999999999999999999998754 337999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCc
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dp 399 (428)
|||||..|+|||||+|+|+||.+|.+|+|+||||+|+.+||+|++.++++.++||+..+++||||++|+||||+||+|||
T Consensus 283 EYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtTkkGSiTSvQAvYVPADDLtDP 362 (521)
T KOG1350|consen 283 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAVYVPADDLTDP 362 (521)
T ss_pred HHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhccccCceeEEEEEEeehhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
.|.+||+|||++.||||.|||-
T Consensus 363 aPattFaHLDAttVLSR~iael 384 (521)
T KOG1350|consen 363 APATTFAHLDATTVLSRGIAEL 384 (521)
T ss_pred CccceeeccchhhhhhhhhHhc
Confidence 9999999999999999999984
No 3
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2.7e-89 Score=707.63 Aligned_cols=325 Identities=53% Similarity=0.878 Sum_probs=312.9
Q ss_pred eeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCccc
Q 014228 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT 167 (428)
Q Consensus 88 G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~~l 167 (428)
|+|++|+|+||||+|++.+|++++.+++.+ ++++.+||+++++++.|++++|++++||++|+.|..||++++||||+++
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~-~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR-EGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecC-CCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence 899999999999999878999999888854 4578999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHH
Q 014228 168 LGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 168 LGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
||||+|++|+|||+++++...+++|+++.+|++++|...+++|.||||+||.|+|++||||++|||++|+|||+|+.+++
T Consensus 80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~ 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence 99999999999999988877778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 014228 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327 (428)
Q Consensus 248 ~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G 327 (428)
+|+++.|.+++||++||||+||+.||++++.+.+ .++|+++|++|+|+||.+|++++++|+|+||||||++|
T Consensus 160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~--------~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G 231 (449)
T TIGR03305 160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAG--------VLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEK 231 (449)
T ss_pred HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhcc--------ccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9987667799999999999999999999998775 56799999999999999999999999999999999789
Q ss_pred CcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhccc
Q 014228 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAH 407 (428)
Q Consensus 328 k~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ 407 (428)
+||||++||+||||+|+||+|+++||||+++||||++|++|++|||||++.++||||+||+|++|+||++|||++++++|
T Consensus 232 ~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~~~GSIT~i~~V~~~~dD~~dPi~d~~~si 311 (449)
T TIGR03305 232 QDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAITSIQAVYVPADDFTDPAAVHTFSH 311 (449)
T ss_pred CceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCCCCcCeeEEEEEEccCCCCCCchhHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeehhhhhc
Q 014228 408 LDATTVLSRQVRMD 421 (428)
Q Consensus 408 ld~~ivLsR~la~~ 421 (428)
|||||||||+||++
T Consensus 312 lDG~IvLsr~La~~ 325 (449)
T TIGR03305 312 LSASLVLSRKRASE 325 (449)
T ss_pred cceEEEEcHHHHhC
Confidence 99999999999987
No 4
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=1.2e-85 Score=684.11 Aligned_cols=336 Identities=68% Similarity=1.044 Sum_probs=311.3
Q ss_pred CCceeeEEEEECCEEEEEeCC-CCchhhhceEEeecc--c---eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCC
Q 014228 84 KGAIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHS--V---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS 157 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~-glp~i~~~l~v~~~~--~---~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~ 157 (428)
....|+|++|+|.+++++|.. .+|++.+..++.... . .+.+||+++.+++.+++++|++++||+.|++|..||+
T Consensus 13 ~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~ 92 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGA 92 (494)
T ss_pred cccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCC
Confidence 345799999999999999984 588887555552212 1 4788999999989999999999999999999999999
Q ss_pred CccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCC
Q 014228 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~ 237 (428)
+++||||+++||||+|++|+|||+++++...+++||++.+|++++|...+++|.||||+||.|+|++||||++|||++|+
T Consensus 93 ~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~Gv 172 (494)
T CHL00060 93 PLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGV 172 (494)
T ss_pred cceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCC
Confidence 99999999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 014228 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (428)
Q Consensus 238 GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~t 317 (428)
|||+|+.++++|+++++.+++||++||||+||+.||++++.+.++++.. ...++|+++|++|+|+||.+|++++|+|+|
T Consensus 173 GKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~-~~~~~rsvvv~atsd~p~~~R~~a~~~A~t 251 (494)
T CHL00060 173 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALT 251 (494)
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccC-cccccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999998777789999999999999999999999998765421 113679999999999999999999999999
Q ss_pred HHHHHHHhCCC-cEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCC
Q 014228 318 VAEHFRDAEGQ-DVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (428)
Q Consensus 318 iAEyfrd~~Gk-~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~ 396 (428)
+|||||| +|+ ||||++||+||||+|+||+++++||||+++||||++|++|++|||||++.++||||+||+|++|+||+
T Consensus 252 iAEyfrd-~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~~~GSITai~tVl~~gdD~ 330 (494)
T CHL00060 252 MAEYFRD-VNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDL 330 (494)
T ss_pred HHHHHHH-cCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCCCCCCeeEEEEEECCCCCC
Confidence 9999999 565 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhccccCeEEEeehhhhhc
Q 014228 397 TDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 397 ~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|||+|++++||||||||||+||++
T Consensus 331 tdPI~d~~~silDGhIvLsr~La~~ 355 (494)
T CHL00060 331 TDPAPATTFAHLDATTVLSRGLAAK 355 (494)
T ss_pred CCcchHhhhhhcceEEEEcHHHHhC
Confidence 9999999999999999999999986
No 5
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=2.5e-85 Score=679.34 Aligned_cols=339 Identities=22% Similarity=0.321 Sum_probs=310.7
Q ss_pred CCCccccccccCCceeeEEEEECCEEEEEeCCCCchhhhceEEeec---cceeEEEEeeecCCc-eEEEEEecCccCCcC
Q 014228 73 GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLVLEVAQHMGEG-VVRTIAMDGTEGLVR 148 (428)
Q Consensus 73 ~~~~~~~~~~~~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~---~~~~~~EVv~~l~~~-~v~~i~l~~t~GL~~ 148 (428)
++.+++.+|++..++|+|++|.|+|+.|+|.+|++++. ..|++++ +.+...+++.+++++ .|++++|++++||++
T Consensus 26 ~~~~~~~~~~~~~~~G~V~~v~~gia~v~~v~Gl~~~~-~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~ 104 (574)
T PTZ00185 26 AAPGQKSFFKATEMIGYVHSIDGTIATLIPAPGNPGVA-YNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQS 104 (574)
T ss_pred cCCcchhhhhhheeeEEEEEEcCeEEEEeecCCCcccc-cCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCC
Confidence 44567899999999999999977799999889999885 3344433 334567888899999 799999999999999
Q ss_pred CCEEEecCCCccccCCccccceEEEEeccccccC------CCCCCc-cccccccCCCcchhcccccceeeccceeecccc
Q 014228 149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK------GDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLA 221 (428)
Q Consensus 149 G~~V~~TG~~l~VPVG~~lLGRVlD~lG~PiD~~------~~i~~~-~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~ 221 (428)
|+.|+.||++++||||+++||||+|++|+|||++ +++..+ .++||+..+|++++|...+++|.||||+||.|+
T Consensus 105 G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~Li 184 (574)
T PTZ00185 105 GQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMI 184 (574)
T ss_pred CCEEEECCCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccc
Confidence 9999999999999999999999999999999987 455545 467999999999999999999999999999999
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHh-------hcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeE
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAK-------AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~-------~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~t 294 (428)
|+|||||++|||++|+|||+|+.++|.|+++ .+.++|||++||||.+|+.+++++|.+.| ++++|
T Consensus 185 PIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~G--------aL~~T 256 (574)
T PTZ00185 185 PIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYG--------ALRYT 256 (574)
T ss_pred cccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcC--------Cccce
Confidence 9999999999999999999998777666642 24578999999999999999999999887 46799
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHh
Q 014228 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER 374 (428)
Q Consensus 295 vvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ER 374 (428)
++|++++|+||.+|+++||+|||+|||||| +|+|||+++||+||||+|+||+|++++|||+++||||++|++|++|+||
T Consensus 257 vVV~AtAdep~~~r~~Apy~a~tiAEYFrd-~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlER 335 (574)
T PTZ00185 257 TVMAATAAEPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLER 335 (574)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHh
Confidence 999999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred hcC----CCCccEeEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 375 ITT----TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 375 a~~----~~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|++ .++||||++|+|++|+||++||||+++++|+||||||||+||++
T Consensus 336 Ag~l~~~~G~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~ 386 (574)
T PTZ00185 336 AAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTG 386 (574)
T ss_pred cccccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhC
Confidence 998 34799999999999999999999999999999999999999986
No 6
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=1.7e-84 Score=673.45 Aligned_cols=327 Identities=75% Similarity=1.129 Sum_probs=308.8
Q ss_pred ceeeEEEEECCEEEEEeCC-CCchhhhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcccc
Q 014228 86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~-glp~i~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VP 162 (428)
++|+|++|.|++|++++.. .+|.+. +++.+. .+..+.+||+++++++.+.+++|++++||+.|+.|..||++++||
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ig-e~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~ 80 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIY-NALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVP 80 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCcccc-CEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEE
Confidence 5799999999999999874 255664 555442 244688999998999999999999999999999999999999999
Q ss_pred CCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014228 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 163 VG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
||+++||||+|++|+|||+.+++...++||++..+|++++|...+++|.||+|+||.|+|+++|||++|||++|+|||||
T Consensus 81 vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~L 160 (463)
T PRK09280 81 VGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 160 (463)
T ss_pred cChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHH
Confidence 99999999999999999999888777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014228 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 243 a~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
+.+|++|+++++.+++||++||||+||+.||++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+||||
T Consensus 161 l~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~--------~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyf 232 (463)
T PRK09280 161 IQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESG--------VLDKTALVFGQMNEPPGARLRVALTGLTMAEYF 232 (463)
T ss_pred HHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcC--------CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999998777789999999999999999999998875 567999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhh
Q 014228 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPA 402 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~ 402 (428)
||++|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++.++||||+|++|++|+||++|||+|
T Consensus 233 rd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSITai~tVl~~gdD~~dPI~d 312 (463)
T PRK09280 233 RDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPA 312 (463)
T ss_pred HHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCCCCCceeEEEEEECcCCCCCCcchH
Confidence 99789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCeEEEeehhhhhc
Q 014228 403 TTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 403 ~~~~~ld~~ivLsR~la~~ 421 (428)
++++||||||||||+||++
T Consensus 313 ~~~silDGhIvLsr~La~~ 331 (463)
T PRK09280 313 TTFAHLDATTVLSRQIAEL 331 (463)
T ss_pred hhhhhcceEEEEcHHHHhC
Confidence 9999999999999999987
No 7
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=1.2e-84 Score=672.68 Aligned_cols=327 Identities=74% Similarity=1.125 Sum_probs=308.4
Q ss_pred eeeEEEEECCEEEEEeCC-CCchhhhceEEeeccc-eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 87 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 87 ~G~V~~V~G~vv~v~f~~-glp~i~~~l~v~~~~~-~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
+|+|++|+|.++++.|.. .++.+.+.+++..... ...+||+.+++++.|++++|+++.||+.|+.|..|+++++||||
T Consensus 2 ~G~v~~v~g~~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg 81 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVG 81 (461)
T ss_pred ccEEEEEEeeEEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcC
Confidence 599999999999999874 4666665566633122 48889999999999999999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHH
Q 014228 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~ 244 (428)
++|||||+|++|+|||+.+++...++||+++.+|++++|....++|.||+|+||.|+|++||||++|||++|+|||||+.
T Consensus 82 ~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~ 161 (461)
T TIGR01039 82 KETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQ 161 (461)
T ss_pred hhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHHH
Confidence 99999999999999999888777778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q 014228 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (428)
Q Consensus 245 ~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd 324 (428)
++++|+.+++.+++||++||||+||+.||++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+||||||
T Consensus 162 ~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~--------~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd 233 (461)
T TIGR01039 162 ELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESG--------VIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRD 233 (461)
T ss_pred HHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcC--------CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777889999999999999999999998765 56799999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhh
Q 014228 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT 404 (428)
Q Consensus 325 ~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~ 404 (428)
++|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||++.++||||+||+|++|+||++|||+|++
T Consensus 234 ~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSITai~tVl~~gdD~~dPi~d~~ 313 (461)
T TIGR01039 234 EQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKTGSITSVQAVYVPADDLTDPAPATT 313 (461)
T ss_pred hcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCceeEEEEEEccCCCCCCccHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEeehhhhhc
Q 014228 405 FAHLDATTVLSRQVRMD 421 (428)
Q Consensus 405 ~~~ld~~ivLsR~la~~ 421 (428)
++||||||||||+||++
T Consensus 314 ~silDGhIvLsr~La~~ 330 (461)
T TIGR01039 314 FAHLDATTVLSRKIAEL 330 (461)
T ss_pred HHhcceEEEECHHHHhC
Confidence 99999999999999986
No 8
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=2.9e-84 Score=673.29 Aligned_cols=327 Identities=62% Similarity=0.966 Sum_probs=307.3
Q ss_pred ceeeEEEEECCEEEEEeCCC-CchhhhceEEeec-cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~g-lp~i~~~l~v~~~-~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
+.|+|++|.|+++++++..+ ++.+ ++++.+.. .....+||+++++++.+.+++|++++||++|+.|..||++++|||
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~i-ge~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~v 80 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPI-NQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPV 80 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCc-cCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 47999999999999997643 2344 45555432 335788999999999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|||+.+++...++||++..+|++++|...+++|.||+|+||.|+|++||||++|||++|+|||||+
T Consensus 81 g~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll 160 (461)
T PRK12597 81 GEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLM 160 (461)
T ss_pred ChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHH
Confidence 99999999999999999998887778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014228 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.+|++|+++++.+++||++||||+||+.||++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+|||||
T Consensus 161 ~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~--------~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfr 232 (461)
T PRK12597 161 MELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESG--------VLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLR 232 (461)
T ss_pred HHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcC--------CcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999998775 5679999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhh
Q 014228 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPAT 403 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~ 403 (428)
|++|+||||++||+||||+|+||+++++||||+++||||++|++|++|+|||++.++||||+|++|++|+||++|||+|+
T Consensus 233 d~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~~~GSIT~i~tVl~~~dD~~dPI~d~ 312 (461)
T PRK12597 233 DEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTKNGSITSIQAVYVPADDLTDPAAVA 312 (461)
T ss_pred HhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCCCCccccEEEEEEecCCCCCCccHHH
Confidence 94499999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hccccCeEEEeehhhhhc
Q 014228 404 TFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 404 ~~~~ld~~ivLsR~la~~ 421 (428)
+++||||||||||+||++
T Consensus 313 ~~~ilDG~IvLsr~La~~ 330 (461)
T PRK12597 313 IFSHLDSTVVLSRAQAAK 330 (461)
T ss_pred HHhhcceEEEEcHHHHhC
Confidence 999999999999999997
No 9
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.9e-83 Score=658.36 Aligned_cols=319 Identities=24% Similarity=0.336 Sum_probs=291.0
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
..+|+|.+|.|++++|+|+ + +.+.+..++...+....+||+ +++++.|++++|++|+||++|++|.+||++++||||
T Consensus 3 ~~~g~v~~i~G~~v~v~~~-~-~~~ge~~~i~~~~~~~~geVi-~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg 79 (436)
T PRK02118 3 KIYTKITDITGNVITVEAE-G-VGYGELATVERKDGSSLAQVI-RLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYS 79 (436)
T ss_pred ceeEEEEEEECcEEEEEeC-C-CCCCCEEEEEcCCCCEEEEEE-EEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcC
Confidence 4589999999999999974 2 344333343221235678885 569999999999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHH
Q 014228 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~ 244 (428)
+++||||+|++|+|||+.+++.. +.+|++..+|++++|...+++|.||||+||.|+|+++|||++|||++|+|||+|+.
T Consensus 80 ~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~ 158 (436)
T PRK02118 80 ESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLA 158 (436)
T ss_pred ccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHH
Confidence 99999999999999998877744 45899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q 014228 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (428)
Q Consensus 245 ~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd 324 (428)
+|+++. +.+++||++||||.||+.+|++++.+.+ .++|+++|++|||+||++|++++++|+|+||||||
T Consensus 159 ~ia~~~---~~~v~Vfa~iGeR~rE~~ef~~~~~~~~--------~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd 227 (436)
T PRK02118 159 RIALQA---EADIIILGGMGLTFDDYLFFKDTFENAG--------ALDRTVMFIHTASDPPVECLLVPDMALAVAEKFAL 227 (436)
T ss_pred HHHHhh---CCCeEEEEEeccchhHHHHHHHHHhhCC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 887653 2378999999999999999999999887 45699999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-CCccEeEEEEEEecCCCCCCchhhh
Q 014228 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-KKGSITSVQAIYVPADDLTDPAPAT 403 (428)
Q Consensus 325 ~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~-~~GSIT~i~~v~~~~dD~~dpi~~~ 403 (428)
+.|+|||||+||+||||+|+||+|+++||+|+++||||++|++|++|||||++. ++||||+||+|++|+||+||||||+
T Consensus 228 ~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~~GSITai~~V~~p~DD~tdPi~d~ 307 (436)
T PRK02118 228 EGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDN 307 (436)
T ss_pred cCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCeeEEEEEEEEcCCCCcCccHHHH
Confidence 434999999999999999999999999999999999999999999999999994 5899999999999999999999999
Q ss_pred hccccCeEEEeehhh
Q 014228 404 TFAHLDATTVLSRQV 418 (428)
Q Consensus 404 ~~~~ld~~ivLsR~l 418 (428)
+++||||||||||+|
T Consensus 308 ~~silDGqIvLsR~l 322 (436)
T PRK02118 308 TGYITEGQFYLRRGR 322 (436)
T ss_pred HHHhcCcEEEecccc
Confidence 999999999999998
No 10
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=6.2e-83 Score=665.12 Aligned_cols=321 Identities=28% Similarity=0.413 Sum_probs=295.0
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhh-hceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~-~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|.+|.|+++.+. |+|++. ++++.. ..+...||+. ++++.+.+++|+++.||+.|+.|++||++++|||
T Consensus 26 ~~~G~V~~v~g~ii~v~---gl~~~~~gEl~~i--~~~~~g~Vi~-l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 99 (497)
T TIGR03324 26 QEVGTVESVSTGIARVH---GLPGVGFEELLRF--PGGLLGIAFN-VDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPV 99 (497)
T ss_pred eEEEEEEEEeceEEEEE---ccCCCCcCCEEEE--CCCcEEEEEE-EcCCeEEEEEecCCcCCcCCCEEEECCCCCeEEC
Confidence 45799999999999997 866653 444443 2345566665 5888999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|++|||||+|++|+|||+++++...++|||++.+|++++|...+++|.||||+||.|+|+|||||++|||++|||||+|+
T Consensus 100 g~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~La 179 (497)
T TIGR03324 100 GDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIA 179 (497)
T ss_pred CHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014228 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.+++.|++ +...+|||++||||++|+.+|++++.+.+ .++||++|++|+|+||.+|+++||+|||+|||||
T Consensus 180 l~~I~~q~-~~dv~~V~~~IGeR~rev~e~i~~l~~~~--------~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfr 250 (497)
T TIGR03324 180 IDTILNQK-GRNVLCIYCAIGQRASAVAKVVANLREHG--------AMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFM 250 (497)
T ss_pred HHHHHHhc-CCCcEEEEEEeccCcHHHHHHHHHhhhcC--------CcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66666653 33335899999999999999999998886 5679999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC--C--CCccEeEEEEEEecCCCCCCc
Q 014228 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--T--KKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~--~--~~GSIT~i~~v~~~~dD~~dp 399 (428)
| +|+||||++||+||||+||||+|+++||||+++||||++|+.|++|+|||++ . ++||||++|+|++|+||++||
T Consensus 251 d-~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~p 329 (497)
T TIGR03324 251 E-QGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAY 329 (497)
T ss_pred h-CCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEcCCCCCCCc
Confidence 9 8999999999999999999999999999999999999999999999999998 3 589999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+++++|+||||||||+||++
T Consensus 330 I~d~v~sItDGqIvLsr~La~~ 351 (497)
T TIGR03324 330 IPTNLISITDGQIYLSPTLFEL 351 (497)
T ss_pred chHhheeccceEEEEcHHHHhC
Confidence 9999999999999999999986
No 11
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=2e-82 Score=660.90 Aligned_cols=325 Identities=27% Similarity=0.388 Sum_probs=297.6
Q ss_pred CceeeEEEEECCEEEEEeCCCC-chhhhceEEeec--cceeEEEEeeecCCceEEEEEecCccCCc-CCCEEEecCCCcc
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~gl-p~i~~~l~v~~~--~~~~~~EVv~~l~~~~v~~i~l~~t~GL~-~G~~V~~TG~~l~ 160 (428)
..||+|++|.|++++++ |+ +..+++++.+.. +....+||+.+ .++.+.+++|++++||+ .|++|..||++++
T Consensus 2 ~~yg~V~~i~g~~v~v~---g~~~~~~ge~~~i~~~~~~~~~geVi~~-~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~ 77 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVE---GVEGVAYGEIVEIELPNGEKRRGQVLEV-SEDKAVVQVFEGTTGLDLKDTKVRFTGEPLK 77 (460)
T ss_pred ceeEEEEEEECcEEEEe---ccCCCCCCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEccCCCCCCCCCCEEEeCCCccE
Confidence 46999999999999997 65 333455555532 23367888886 56678899999999999 8999999999999
Q ss_pred ccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||||++|||||+|++|+|||+++++...+++|++..+|++++|....++|.||+|+||.|+|+++|||++|||++|+|||
T Consensus 78 V~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs 157 (460)
T PRK04196 78 LPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHN 157 (460)
T ss_pred EEcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCcc
Confidence 99999999999999999999998887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---cCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKA---HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (428)
Q Consensus 241 tLa~~ii~n~~~~---~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~t 317 (428)
+|+.+|+++...+ ...+|||++||||+||+.+|++++.+.+ .++||++|++|+|+||.+|++++|+|+|
T Consensus 158 ~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~--------~l~rtvvV~atsd~p~~~R~~a~~~a~t 229 (460)
T PRK04196 158 ELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETG--------ALERSVVFLNLADDPAIERILTPRMALT 229 (460)
T ss_pred HHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcC--------CcceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999988875322 1238899999999999999999998875 5679999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCC
Q 014228 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADD 395 (428)
Q Consensus 318 iAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD 395 (428)
+|||||+.+|+||||++||+||||+|+||+|+++||||+++||||++|+.|++|||||++. ++||||+||+|++|+||
T Consensus 230 iAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD 309 (460)
T PRK04196 230 AAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDD 309 (460)
T ss_pred HHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCC
Confidence 9999994489999999999999999999999999999999999999999999999999986 68999999999999999
Q ss_pred CCCchhhhhccccCeEEEeehhhhhc
Q 014228 396 LTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 396 ~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|||+|++++||||||||||+||++
T Consensus 310 ~~dpI~d~~~sI~DG~ivLsr~La~~ 335 (460)
T PRK04196 310 ITHPIPDLTGYITEGQIVLSRELHRK 335 (460)
T ss_pred CCCchhhhhhhhcceEEEEcHHHHhC
Confidence 99999999999999999999999987
No 12
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.5e-82 Score=660.51 Aligned_cols=324 Identities=26% Similarity=0.388 Sum_probs=296.7
Q ss_pred ceeeEEEEECCEEEEEeCCCC-chhhhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCcCCCE-EEecCCCccc
Q 014228 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITV 161 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~gl-p~i~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~-V~~TG~~l~V 161 (428)
+|++|++|.|++++++ |+ +..+++++.+. .+.....||+.+ .++.+.+++|++++||+.|+. |..||++++|
T Consensus 1 ~y~~v~~i~g~iv~v~---g~~~~~~ge~~~i~~~~~~~~~geVv~~-~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v 76 (458)
T TIGR01041 1 EYSTITEIAGPLVFVE---GVEPVAYNEIVEIETPDGEKRRGQVLDS-SEGLAVVQVFEGTTGLDPTGTKVRFTGETLKL 76 (458)
T ss_pred CccEEEEEEccEEEEE---ccCCCCcCCEEEEEcCCCcEEEEEEEEE-ECCEEEEEEecCCcCcCCCCcEEEECCCceEE
Confidence 4799999999999997 66 33456665553 222367888876 567888999999999999986 9999999999
Q ss_pred cCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhH
Q 014228 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (428)
Q Consensus 162 PVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTt 241 (428)
|||++|||||+|++|+|||+++++..+++||++..+|++++|...+++|.||||+||.|+|+++|||++|||++|+|||+
T Consensus 77 ~vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~ 156 (458)
T TIGR01041 77 PVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE 156 (458)
T ss_pred EcChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHH
Confidence 99999999999999999999888877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---cCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 014228 242 LIMELINNVAKA---HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (428)
Q Consensus 242 La~~ii~n~~~~---~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ti 318 (428)
|+.+|+++...+ +..+|||++||||+||+.+|++++.+.+ .++||++|++|+|+||.+|++++|+|+|+
T Consensus 157 L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~--------~l~rtvvv~atsd~p~~~R~~a~~~a~ti 228 (458)
T TIGR01041 157 LAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETG--------ALERAVVFLNLADDPAVERIVTPRMALTA 228 (458)
T ss_pred HHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcC--------CcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999988875321 1238899999999999999999998775 56799999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCC
Q 014228 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDL 396 (428)
Q Consensus 319 AEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~ 396 (428)
|||||+++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|||||++. ++||||+||+|++|+||+
T Consensus 229 AEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD~ 308 (458)
T TIGR01041 229 AEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDI 308 (458)
T ss_pred HHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCCC
Confidence 999994489999999999999999999999999999999999999999999999999986 689999999999999999
Q ss_pred CCchhhhhccccCeEEEeehhhhhc
Q 014228 397 TDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 397 ~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|||+|++++||||||||||+||++
T Consensus 309 ~dPI~d~~~sIlDGhivLsr~La~~ 333 (458)
T TIGR01041 309 THPIPDLTGYITEGQIVLSRELHRK 333 (458)
T ss_pred CCchHHhhhhhcceEEEEcHHHHhC
Confidence 9999999999999999999999987
No 13
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.2e-82 Score=638.01 Aligned_cols=324 Identities=30% Similarity=0.500 Sum_probs=297.0
Q ss_pred cCCceeeEEEEECCEEEEEeCCCCchhhhceEEeec---cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCc
Q 014228 83 GKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (428)
Q Consensus 83 ~~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~---~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l 159 (428)
....+|+|++|.|.++++. |+....+++|.+.. .....+||+.+ .++.+.+++|++..|+.+|++|..+|+++
T Consensus 21 ~~~~~G~v~~v~G~~lea~---g~~~~iGelc~i~~~~~~~~~~aEVvgf-~~~~~~L~p~~~~~gv~~g~~V~~~~~~~ 96 (441)
T COG1157 21 PYKRRGRLTRVTGLLLEAV---GPQARIGELCKIERSRGSEKVLAEVVGF-NEERVLLMPFEPVEGVSPGAEVVPTGRPL 96 (441)
T ss_pred cceEEEEEEEEeeeEEEEe---cCCCcccceEEEEecCCCCceeEEEEEE-cCCeEEEeccCccccCCCCCEEEecCCcc
Confidence 3445799999999999997 65445567775442 22238999998 56667799999999999999999999999
Q ss_pred cccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 160 ~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+||+|++|||||+|++|+|||+.+.+....+.|+...+|+++.|..++++|.||+|+||.|+|+|+|||+|||+++||||
T Consensus 97 ~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGK 176 (441)
T COG1157 97 SVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGK 176 (441)
T ss_pred ccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcH
Confidence 99999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|||+.+|+++. ..|++|.++||||+|||.||+++... ++.++|||+|++|+|+||.+|.+++++|++||
T Consensus 177 StLLgMiar~t---~aDv~ViaLIGERGREVrEFIE~~Lg--------~egl~rsViVvATSD~s~l~R~~aa~~At~IA 245 (441)
T COG1157 177 STLLGMIARNT---EADVNVIALIGERGREVREFIEKDLG--------EEGLKRSVVVVATSDESALMRLKAAFTATTIA 245 (441)
T ss_pred HHHHHHHhccc---cCCEEEEEEeeccchhHHHHHHHhcc--------hhhccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999875 34899999999999999776654322 23578999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCc
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dp 399 (428)
||||| |||+|||++||+||||+|||||++..|+||.++||||++|+.|++|+||||..++||||+|+||++++||++||
T Consensus 246 EyFRD-qG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITafYTVLveGDD~~dP 324 (441)
T COG1157 246 EYFRD-QGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAFYTVLVEGDDMNDP 324 (441)
T ss_pred HHHHh-CCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEEEEEEEeecCCCCCc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhcc
Q 014228 400 APATTFAHLDATTVLSRQVRMDT 422 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~~ 422 (428)
|+|++++||||||||||+||++-
T Consensus 325 iaD~~RsILDGHIvLsR~LA~~g 347 (441)
T COG1157 325 IADEVRSILDGHIVLSRALAEAG 347 (441)
T ss_pred hhhhhhhhccceEEeeHhHHhcC
Confidence 99999999999999999999973
No 14
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=8.3e-82 Score=658.77 Aligned_cols=321 Identities=29% Similarity=0.430 Sum_probs=295.1
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhh-hceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~-~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|++|.|+++.|. |+|++. ++++.. +.+. .+++.+++++.|.+++|++++||++|+.|+.||++++|||
T Consensus 26 ~~~G~V~~v~g~i~~v~---gl~~~~~ge~~~i--~~~~-~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 99 (502)
T PRK13343 26 REIGRVESVGDGIAFVS---GLPDAALDELLRF--EGGS-RGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPV 99 (502)
T ss_pred EEeeEEEEEeCCEEEEe---CCCCCCCCCEEEE--CCCc-EEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeec
Confidence 35799999999999997 876553 344433 3344 4455667999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|||+++++...+++|++..+|++++|...+++|.||||+||.|+|+|||||++|||++|+|||+|+
T Consensus 100 g~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~La 179 (502)
T PRK13343 100 GDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIA 179 (502)
T ss_pred CHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014228 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.+++.|++ +...+|||++||||.+|+.++++++.+.+ .++||++|++|+|+||.+|+++||+|||+|||||
T Consensus 180 l~~i~~~~-~~dv~~V~~~IGer~rev~e~~~~l~~~~--------~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfr 250 (502)
T PRK13343 180 IDAIINQK-DSDVICVYVAIGQKASAVARVIETLREHG--------ALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFR 250 (502)
T ss_pred HHHHHhhc-CCCEEEEEEEeccChHHHHHHHHHHHhcC--------ccceeEEEEecccccHHHHHHHHHHHHHHHHHHH
Confidence 67666653 23334699999999999999999998876 5679999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCc
Q 014228 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dp 399 (428)
| +|+||||++||+||||+||||+|++++|||+++||||++|+.|++|+|||++. ++||||++|+|++++||++||
T Consensus 251 d-~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~V~~~~dD~s~p 329 (502)
T PRK13343 251 D-QGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAY 329 (502)
T ss_pred h-CCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEEEEcCCCCCCCc
Confidence 9 89999999999999999999999999999999999999999999999999985 689999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+++++|+||||||||+||++
T Consensus 330 I~~~v~sItDGqIvLsr~La~~ 351 (502)
T PRK13343 330 IPTNLISITDGQIYLDSDLFAA 351 (502)
T ss_pred chhhhhcccceEEEECHHHHhC
Confidence 9999999999999999999986
No 15
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=8.6e-82 Score=654.15 Aligned_cols=320 Identities=23% Similarity=0.331 Sum_probs=295.0
Q ss_pred ceeeEEEEECCEEEEEeCCCCchh-hhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i-~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
.+|+|++|.|.++.|. |++++ .++++... .+...+| .+++++.|.+++|++++||++|+.|+.||++++||||
T Consensus 6 ~~G~V~~v~~~ii~v~---Gl~~~~~ge~~~i~--~~~~g~v-i~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg 79 (485)
T CHL00059 6 NTGTVLQVGDGIARIY---GLDEVMAGELVEFE--DGTIGIA-LNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVS 79 (485)
T ss_pred eeEEEEEEeccEEEEe---ccccCCcCCEEEEC--CCCEEEE-EEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcC
Confidence 4799999999999997 77433 44555443 3445555 4568899999999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHH
Q 014228 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~ 244 (428)
++|||||+|++|+|||+++++..++++|++..+|++++|...+++|.||||+||.|+|+|+|||++|||++|+|||+|+.
T Consensus 80 ~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal 159 (485)
T CHL00059 80 EAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAT 159 (485)
T ss_pred HhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHH
Confidence 99999999999999999998877788999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q 014228 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (428)
Q Consensus 245 ~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd 324 (428)
+++.|++ +...+|||++||||.+|+.+|++++.+.+ .++||++|++|+|+||.+|+++||+|||+|||||+
T Consensus 160 ~~I~~q~-~~dv~cV~~~IGer~rev~e~~~~l~~~~--------~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~ 230 (485)
T CHL00059 160 DTILNQK-GQNVICVYVAIGQKASSVAQVVTTLQERG--------AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMY 230 (485)
T ss_pred HHHHhcc-cCCeEEEEEEecCCchHHHHHHHHhhccc--------chhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHH
Confidence 7777763 34446799999999999999999998876 56799999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCch
Q 014228 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 325 ~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dpi 400 (428)
+|+||||++||+||||+|+||+|++++|||+++||||++|+.|++|+|||++. ++||||++|+|++++||++|||
T Consensus 231 -~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~pI 309 (485)
T CHL00059 231 -RGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYI 309 (485)
T ss_pred -cCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEccCCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999986 5899999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014228 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
|+++++|+||||||||+||++
T Consensus 310 ~~~v~sItDGqIvLsr~La~~ 330 (485)
T CHL00059 310 PTNVISITDGQIFLSADLFNA 330 (485)
T ss_pred hHhhhhhcceEEEEcHHHHhC
Confidence 999999999999999999986
No 16
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.7e-81 Score=657.37 Aligned_cols=321 Identities=25% Similarity=0.391 Sum_probs=295.1
Q ss_pred CceeeEEEEECCEEEEEeCCCCchh-hhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i-~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|++|.|+++.++ |++.+ +++++.+. .+...||+ .++++.+.+++|++++||+.|+.|+.||++++|||
T Consensus 26 ~~~G~V~~v~g~~v~v~---g~~~~~~ge~~~i~--~~~~g~Vi-~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~v 99 (502)
T PRK09281 26 EEVGTVISVGDGIARVY---GLDNVMAGELLEFP--GGVYGIAL-NLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPV 99 (502)
T ss_pred EEEEEEEEEeCCEEEEE---CccccccCCEEEEC--CCcEEEEE-EEcCCeEEEEEecCcccccCCCeeeecCCceEEec
Confidence 35799999999999997 77443 45555443 34445555 56888999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|++|||||+|++|+|||+++++...+++|+++.+|++++|...+++|.||+++||.|+|++||||++|||++|+|||+||
T Consensus 100 g~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~la 179 (502)
T PRK09281 100 GEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIA 179 (502)
T ss_pred CHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014228 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.+++.|++ +...+|||++||||++|+.+|++++.+.+ .++||++|++|+|+||.+|+++||+|+|+|||||
T Consensus 180 l~~i~~~~-~~dv~~V~~~IGer~~ev~e~~~~~~~~~--------~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfr 250 (502)
T PRK09281 180 IDTIINQK-GKDVICIYVAIGQKASTVAQVVRKLEEHG--------AMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFM 250 (502)
T ss_pred HHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcC--------CccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777664 33334699999999999999999998876 5679999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCc
Q 014228 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dp 399 (428)
| +|+||||++||+||||+|+||+|+++||||+++||||++|+.|++|||||++. ++||||++|+|++|+||++||
T Consensus 251 d-~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~dD~s~p 329 (502)
T PRK09281 251 D-NGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAY 329 (502)
T ss_pred H-cCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCCCCCCCc
Confidence 9 79999999999999999999999999999999999999999999999999985 689999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+++++|+||||||||+||++
T Consensus 330 I~d~~~sItDGqIvLsr~La~~ 351 (502)
T PRK09281 330 IPTNVISITDGQIFLESDLFNA 351 (502)
T ss_pred chHhhhcccceEEEEcHHHHhC
Confidence 9999999999999999999987
No 17
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=7.6e-81 Score=653.89 Aligned_cols=321 Identities=26% Similarity=0.405 Sum_probs=293.2
Q ss_pred CceeeEEEEECCEEEEEeCCCCch-hhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPP-ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~-i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+|+|++|.|+++.++ |++. .+++++... .+...|| .+++++.+.+++|+++.||+.|+.|+.||++++|||
T Consensus 25 ~~~G~V~~v~g~ii~v~---g~~~~~~ge~~~i~--~~~~g~V-i~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 98 (501)
T TIGR00962 25 EEVGTVVSVGDGIARVY---GLENVMSGELIEFE--GGVQGIA-LNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPV 98 (501)
T ss_pred EEEEEEEEEeCCEEEEE---CCcCCCCCCEEEEC--CCeEEEE-EEecCCeEEEEEecCCcCCCCCCeeEecCCccEEec
Confidence 35799999999999997 7733 344554443 3444454 456888999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|||+++++...+++|+++.+|++++|...+++|.||+|+||.|+|+|+|||++|||++|+|||+|+
T Consensus 99 g~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~La 178 (501)
T TIGR00962 99 GDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVA 178 (501)
T ss_pred ChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHH
Confidence 99999999999999999998887777889999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014228 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.+++.|++ ++..+|||++||||++|+.++++++.+.+ .++||++|++|+|+||.+|+++||+|+|+|||||
T Consensus 179 l~~i~~~~-~~dv~~V~~~IGer~rev~e~~~~~~~~~--------~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfr 249 (501)
T TIGR00962 179 IDTIINQK-DSDVYCVYVAIGQKASTVAQVVRKLEEHG--------AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFR 249 (501)
T ss_pred HHHHHhhc-CCCeEEEEEEccCChHHHHHHHHHHHhcC--------ccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66666653 33334799999999999999999998876 5679999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCc
Q 014228 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dp 399 (428)
| +|+||||++||+||||+|+||+|++++|||+++||||++|+.|++|+|||++. ++||||++|+|++|+||++||
T Consensus 250 d-~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSITal~~V~~~~dD~s~p 328 (501)
T TIGR00962 250 D-NGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAY 328 (501)
T ss_pred H-cCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceEEEEEEECCCCCCCCc
Confidence 9 89999999999999999999999999999999999999999999999999984 379999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+++++||||||||||+||++
T Consensus 329 I~~~~~sItDGqIvLsr~La~~ 350 (501)
T TIGR00962 329 IPTNVISITDGQIFLESDLFNS 350 (501)
T ss_pred chHhhhhhcceEEEEcHhHHhC
Confidence 9999999999999999999986
No 18
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=9.2e-80 Score=635.14 Aligned_cols=322 Identities=29% Similarity=0.452 Sum_probs=294.9
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEee-c-cc-eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~-~-~~-~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~ 160 (428)
...+|+|++|.|+++++. +....+++++.+. . .. .+..||+.+.++. +.+++|++++||+.|++|+.||++++
T Consensus 21 ~~~~G~V~~v~g~~v~~~---~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~-~~l~~~~~~~gi~~g~~V~~tg~~~~ 96 (439)
T PRK06936 21 IQIRGRVTQVTGTILKAV---VPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQ-ALLTPLGEMYGISSNTEVSPTGTMHQ 96 (439)
T ss_pred cceeeEEEEEECcEEEEE---eCCCCCCCEEEEecCCCCcceEEEEEEEECCe-EEEEecCCCCCCCCCCEEEeCCCceE
Confidence 455799999999999996 3333445665553 1 22 4788999986655 55999999999999999999999999
Q ss_pred ccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||||++|||||+|++|+|||+.+++...+++|++..+|++++|....++|.||+++||.++|+++||+++|||++|+|||
T Consensus 97 v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKS 176 (439)
T PRK06936 97 VGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS 176 (439)
T ss_pred EEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChH
Confidence 99999999999999999999998887777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
||+.+|+++. +.+++||++||||+||++||+++.... ..++|+++|++|+|+||.+|++++|+|+|+||
T Consensus 177 tLl~~Ia~~~---~~dv~V~~liGERgrEv~ef~~~~l~~--------~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 245 (439)
T PRK06936 177 TLLASLIRSA---EVDVTVLALIGERGREVREFIESDLGE--------EGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245 (439)
T ss_pred HHHHHHhcCC---CCCEEEEEEEccCcHHHHHHHHHHhcc--------cccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9998888764 357899999999999999988664433 24689999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCch
Q 014228 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi 400 (428)
|||| +|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||+..++||||+||+|++|+||++|||
T Consensus 246 yfrd-~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~~~GSIT~i~tVl~~gdD~~dpI 324 (439)
T PRK06936 246 YFRD-QGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDMTEPV 324 (439)
T ss_pred HHHH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCCcceeeeEEEEccCCCCCcch
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014228 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|++++||||||||||+||++
T Consensus 325 ~d~~~silDGhIvLsr~La~~ 345 (439)
T PRK06936 325 ADETRSILDGHIILSRKLAAA 345 (439)
T ss_pred HHHhhhhcceEEEECHHHHhC
Confidence 999999999999999999987
No 19
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-79 Score=633.25 Aligned_cols=320 Identities=28% Similarity=0.477 Sum_probs=296.8
Q ss_pred ceeeEEEEECCEEEEEeCCCCchhhhceEEeec-cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~-~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
.+|+|.+|.|.++++. |++.-.++++.++. ...+.+||+++. ++.+.+++|++++||+.|++|..||++++||||
T Consensus 25 ~~G~v~~v~g~~i~~~---g~~~~ige~~~i~~~~~~~~~EVv~~~-~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg 100 (444)
T PRK08972 25 ASGKLVRVVGLTLEAT---GCRAPVGSLCSIETMAGELEAEVVGFD-GDLLYLMPIEELRGVLPGARVTPLGEQSGLPVG 100 (444)
T ss_pred eeeEEEEEEcCEEEEe---eCCCCCCCEEEEecCCCcEEEEEEEec-CCEEEEEECCCcCCCCCCCEEEECCCccEEEcC
Confidence 4699999999999997 65555567777642 345888999985 557889999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHH
Q 014228 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~ 244 (428)
++|||||+|++|+|||+.+++..++.||++..+|++++|...+++|.||+++||.++|+++||+++|||++|+|||||+.
T Consensus 101 ~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~ 180 (444)
T PRK08972 101 MSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLG 180 (444)
T ss_pred hhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHHH
Confidence 99999999999999999988877788999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q 014228 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (428)
Q Consensus 245 ~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd 324 (428)
+|+++. ..+++|+++||||+||+.||++++...+ .++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 181 ~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~--------~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd 249 (444)
T PRK08972 181 MMTRGT---TADVIVVGLVGERGREVKEFIEEILGEE--------GRARSVVVAAPADTSPLMRLKGCETATTIAEYFRD 249 (444)
T ss_pred HhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccC--------CcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 887643 3478899999999999999999876553 46899999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCCCCchhh
Q 014228 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDLTDPAPA 402 (428)
Q Consensus 325 ~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~~dpi~~ 402 (428)
+|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||++. ++||||+|++|++|+||++|||+|
T Consensus 250 -~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSITai~tVl~~gdD~~dpI~d 328 (444)
T PRK08972 250 -QGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQDPIAD 328 (444)
T ss_pred -cCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCceeeeEEEEEEeCCCCCcchHH
Confidence 89999999999999999999999999999999999999999999999999975 479999999999999999999999
Q ss_pred hhccccCeEEEeehhhhhc
Q 014228 403 TTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 403 ~~~~~ld~~ivLsR~la~~ 421 (428)
++++||||||||||+||++
T Consensus 329 ~~~silDGhIvLsr~La~~ 347 (444)
T PRK08972 329 ASRAILDGHIVLSRELADS 347 (444)
T ss_pred hhhhhcceEEEEcHHHHhC
Confidence 9999999999999999987
No 20
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.8e-79 Score=632.65 Aligned_cols=323 Identities=24% Similarity=0.341 Sum_probs=290.4
Q ss_pred ceeeEEEEECCEEEEEeCCCC-chhhhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCcC-CCEEEecCCCccc
Q 014228 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVR-GQRVLNTGSPITV 161 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~gl-p~i~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~-G~~V~~TG~~l~V 161 (428)
+|++|++|.|+++.+. |+ ...+++++.+. .+.....||+.+ .++.+.+++|++++||.. |+.|..||++++|
T Consensus 1 ~y~~v~~i~G~~i~~~---g~~~~~~Ge~~~i~~~~~~~~~geVi~~-~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v 76 (466)
T TIGR01040 1 EYRTVSGVNGPLVILD---NVKFPRFAEIVNLTLPDGTVRSGQVLEV-SGNKAVVQVFEGTSGIDAKKTTCEFTGDILRT 76 (466)
T ss_pred CCccceEEEccEEEEE---CCCCCCcCCEEEEEeCCCCEEEEEEEEE-eCCeEEEEEcCCCCCcccCCCEEEECCCccEE
Confidence 4789999999999997 66 33345666552 222256788876 677788999999999996 9999999999999
Q ss_pred cCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhH
Q 014228 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (428)
Q Consensus 162 PVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTt 241 (428)
|||+++||||+|++|+|||+.+++..++++||+..+|++++|...+++|.||||+||.|+|+++|||++|||++|+|||+
T Consensus 77 ~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~ 156 (466)
T TIGR01040 77 PVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 156 (466)
T ss_pred EcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHH
Confidence 99999999999999999999988877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh------------hcCcEEEEEeecCCcchHHHH-HHHHHHccccccCcccCCCeEEEEEecCCCCHHHH
Q 014228 242 LIMELINNVAK------------AHGGFSVFAGVGERTREGNDL-YREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (428)
Q Consensus 242 La~~ii~n~~~------------~~~~~~V~~giGeR~~Ev~dl-~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r 308 (428)
|+.+|+++... ....+|||++|||| ||+.++ +++|.+.+ .++||++|++|+|+||.+|
T Consensus 157 L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g--------~l~rtvvv~atsd~p~~~R 227 (466)
T TIGR01040 157 IAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENG--------SMERVCLFLNLANDPTIER 227 (466)
T ss_pred HHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcC--------CcceEEEEEECCCCCHHHH
Confidence 99998887531 01128899999999 777665 45565554 4679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEE
Q 014228 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSV 386 (428)
Q Consensus 309 ~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i 386 (428)
++++|+|+|+|||||+++|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++. ++||||+|
T Consensus 228 ~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITai 307 (466)
T TIGR01040 228 IITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQI 307 (466)
T ss_pred HHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEEE
Confidence 9999999999999995589999999999999999999999999999999999999999999999999986 58999999
Q ss_pred EEEEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 387 ~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|+|++|+||++|||||++++||||||||||+||++
T Consensus 308 ~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~ 342 (466)
T TIGR01040 308 PILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNR 342 (466)
T ss_pred EEEECCCCCCCCcchhhhhhhcceEEEECHHHHhC
Confidence 99999999999999999999999999999999986
No 21
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.3e-79 Score=631.43 Aligned_cols=324 Identities=30% Similarity=0.454 Sum_probs=293.9
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEeec-cc-eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~-~~-~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~V 161 (428)
...+|+|++|.|+++++++.+....+ ++++.+.. .. ...+||+++.++ .+.+++|++++||+.|+.|..||++++|
T Consensus 15 ~~~~g~v~~i~g~~i~v~g~~~~~~~-ge~~~i~~~~~~~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~V~~tg~~~~v 92 (442)
T PRK08927 15 LVIYGRVVAVRGLLVEVAGPIHALSV-GARIVVETRGGRPVPCEVVGFRGD-RALLMPFGPLEGVRRGCRAVIANAAAAV 92 (442)
T ss_pred ceeeeEEEEEEccEEEEEecCCCCCc-CCEEEEEcCCCCEEEEEEEEEcCC-eEEEEEccCccCCCCCCEEEeCCCccEE
Confidence 34579999999999999966422344 44444432 22 478899999665 6889999999999999999999999999
Q ss_pred cCCccccceEEEEeccccccCCCCCCc-cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 162 PVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 162 PVG~~lLGRVlD~lG~PiD~~~~i~~~-~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
|||+++||||+|++|+|||+++++... +++||+..+|++++|....++|.||+|+||.|+|+++||+++|||++|+|||
T Consensus 93 ~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKT 172 (442)
T PRK08927 93 RPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKS 172 (442)
T ss_pred ECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHH
Confidence 999999999999999999999887654 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
||+++|+++. +.+++||++||||+||+.+|+++..... .++|+++|++|+|+||.+|++++++|+|+||
T Consensus 173 tLL~~I~~~~---~~d~~v~~~iGER~rEv~ef~~~~l~~~--------~l~rsvvv~atsd~~~~~r~~a~~~a~tiAE 241 (442)
T PRK08927 173 VLLSMLARNA---DADVSVIGLIGERGREVQEFLQDDLGPE--------GLARSVVVVATSDEPALMRRQAAYLTLAIAE 241 (442)
T ss_pred HHHHHHHhcc---CCCEEEEEEEecCcHHHHHHHHHHhhcc--------CceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9998887654 3478899999999999999987654432 4679999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCCCC
Q 014228 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDLTD 398 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~~d 398 (428)
|||| +|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++. ++||||+||+|++|+||++|
T Consensus 242 yfrd-~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~tVlv~gdD~~d 320 (442)
T PRK08927 242 YFRD-QGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNE 320 (442)
T ss_pred HHHH-CCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeeeeeEccCCCCCC
Confidence 9998 89999999999999999999999999999999999999999999999999984 58999999999999999999
Q ss_pred chhhhhccccCeEEEeehhhhhc
Q 014228 399 PAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 399 pi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+|++++|+||||||||+||++
T Consensus 321 pi~d~~~~i~Dg~ivLsr~La~~ 343 (442)
T PRK08927 321 PVADAVRGILDGHIVMERAIAER 343 (442)
T ss_pred chhhhhhccccEEEEEcHHHHhC
Confidence 99999999999999999999986
No 22
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=3.3e-79 Score=636.90 Aligned_cols=317 Identities=16% Similarity=0.225 Sum_probs=287.4
Q ss_pred eEEEEECCEEEEEeCCCCchh-hhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCccc
Q 014228 89 QVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT 167 (428)
Q Consensus 89 ~V~~V~G~vv~v~f~~glp~i-~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~~l 167 (428)
+|++|.|.++.|. |++++ .++++....+.....+| ..++++.+.+++|++++||+.|+.|+.||++++||||+++
T Consensus 4 ~V~~v~~~i~~v~---Gl~~~~~ge~~~~~~~~~~~g~V-~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 79 (507)
T PRK07165 4 KIKSIFDYIVEVK---GEYDYQQNQFFTLKNNPNVKAFV-ISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY 79 (507)
T ss_pred EEEEEeceEEEEE---cccCCCcCCEEEECCCCeEEEEE-EEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence 7899999999997 87444 34444433222344555 4568889999999999999999999999999999999999
Q ss_pred cceEEEEeccccccCCCCCC-----ccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014228 168 LGRIMNVIGEPIDEKGDLKT-----EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 168 LGRVlD~lG~PiD~~~~i~~-----~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
||||+|++|+|||+++++.. ...+|+++.+|++++|...+++|.||||+||.|+|+|||||++|||++|||||+|
T Consensus 80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l 159 (507)
T PRK07165 80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI 159 (507)
T ss_pred cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence 99999999999999987765 4677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014228 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 243 a~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
+.++|.|++ ....+|||++||||.+|+.++++++.+.+ +++||++|++++ +||.+|+++||+|||+||||
T Consensus 160 al~~I~~q~-~~dv~~V~~~IGer~~ev~~~~~~l~~~g--------al~~tvvV~ats-d~~~~r~~ap~~a~tiAEyf 229 (507)
T PRK07165 160 ALNTIINQK-NTNVKCIYVAIGQKRENLSRIYETLKEHD--------ALKNTIIIDAPS-TSPYEQYLAPYVAMAHAENI 229 (507)
T ss_pred HHHHHHHhc-CCCeEEEEEEccCChHHHHHHHHHhhhcC--------ceeeeEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 766666664 33345799999999999999999999886 567999999998 49999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCC-CccEeEEEEEEecCCCCCCchh
Q 014228 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTDPAP 401 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~-~GSIT~i~~v~~~~dD~~dpi~ 401 (428)
|+ + +||||++||+||||+|+||+|++++|||+++||||++|+.|++|||||++.. +||||++|+|++|+||++||||
T Consensus 230 rd-~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g~GSITalpiV~t~~dDis~pIp 307 (507)
T PRK07165 230 SY-N-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKNRKTITALPILQTVDNDITSLIS 307 (507)
T ss_pred Hh-c-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCCCCceEEEEEEECCCCCCCCcch
Confidence 99 6 9999999999999999999999999999999999999999999999999975 7999999999999999999999
Q ss_pred hhhccccCeEEEeehhhhhc
Q 014228 402 ATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 402 ~~~~~~ld~~ivLsR~la~~ 421 (428)
+++++|+||||||||+||++
T Consensus 308 dnv~sItDGqIvLsr~L~~~ 327 (507)
T PRK07165 308 SNIISITDGQIVTSSDLFAS 327 (507)
T ss_pred hhhccccCeEEEEcHHHHhC
Confidence 99999999999999999986
No 23
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=8.6e-79 Score=641.03 Aligned_cols=323 Identities=28% Similarity=0.428 Sum_probs=289.0
Q ss_pred eeEEEEECCEEEEEeCCCCc-hhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCcc
Q 014228 88 GQVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (428)
Q Consensus 88 G~V~~V~G~vv~v~f~~glp-~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~~ 166 (428)
|+|.+|.|++|+++ |++ ..+++++.+. +.++..||+.+ +++.+.+++|++|+||++|++|..||++++|+||++
T Consensus 2 G~I~~V~Gpvv~a~---g~~~~~~gE~v~v~-~~~l~gEVi~~-~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpg 76 (578)
T TIGR01043 2 GRIIRVSGPLVVAD---GMKGAQMYEVVKVG-EEGLIGEIIRI-EGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPG 76 (578)
T ss_pred CEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCcEEEEEEEE-cCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHH
Confidence 89999999999998 543 2334554444 34688999987 556677999999999999999999999999999999
Q ss_pred ccceEEEEeccccccCCC----C----------CCc--------------------------------------------
Q 014228 167 TLGRIMNVIGEPIDEKGD----L----------KTE-------------------------------------------- 188 (428)
Q Consensus 167 lLGRVlD~lG~PiD~~~~----i----------~~~-------------------------------------------- 188 (428)
|||||+|++|+|||+.++ . ..+
T Consensus 77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v 156 (578)
T TIGR01043 77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI 156 (578)
T ss_pred HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence 999999999999997621 1 111
Q ss_pred -----------------------------cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 189 -----------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 189 -----------------------------~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+.||+.. +|++++|...+++|.||+|+||.|+|++||||++|||++||||
T Consensus 157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK 235 (578)
T TIGR01043 157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK 235 (578)
T ss_pred EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence 2679977 6679999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|+|+++++++. +.|++||++||||++|++|++++|.+....+++ +..++||++|+||||+||.+|++++|+|+|+|
T Consensus 236 T~l~~~lak~~---~adivVyvg~GERG~E~~e~le~f~~l~dp~~g-~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiA 311 (578)
T TIGR01043 236 TVTQHQLAKWS---DADIVVYIGCGERGNEMTDVLEEFPELKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTGITIA 311 (578)
T ss_pred HHHHHHHHhcC---CCCEEEEEEeccChHHHHHHHHHhHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999998763 568999999999999999999999775322222 34688999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCC-------CccEeEEEEEEec
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-------KGSITSVQAIYVP 392 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~-------~GSIT~i~~v~~~ 392 (428)
||||| +|+||+|++||+||||+|+||||++++|||+++|||+++++.|++||||||+.. +||||+|++|++|
T Consensus 312 EYfRD-~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ 390 (578)
T TIGR01043 312 EYFRD-MGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPP 390 (578)
T ss_pred HHHHH-CCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECC
Confidence 99999 799999999999999999999999999999999999999999999999999752 6999999999999
Q ss_pred CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 393 ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 393 ~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+||++|||+++|++|+|+||+|||+||++
T Consensus 391 ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ 419 (578)
T TIGR01043 391 GGDFSEPVTQNTLRIVKVFWALDADLAQR 419 (578)
T ss_pred CCCCCccHHHHHHHHhCcEEEeCHHHHhc
Confidence 99999999999999999999999999987
No 24
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.7e-78 Score=639.60 Aligned_cols=327 Identities=29% Similarity=0.420 Sum_probs=293.7
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
...|+|.+|.|++|++++.++. .+ ++++.+. +.++..||+.+.+ +.+.+++|++|+||++|++|..||++++|++|
T Consensus 2 ~~~G~I~~V~Gpvv~~~~~~~~-~~-~E~v~v~-~~~l~gEVi~~~~-d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lG 77 (586)
T PRK04192 2 MTKGKIVRVSGPLVVAEGMGGA-RM-YEVVRVG-EEGLIGEIIRIEG-DKATIQVYEETSGIKPGEPVEFTGEPLSVELG 77 (586)
T ss_pred CceeEEEEEECcEEEEEeCCCC-Cc-cCEEEEC-CCcEEEEEEEEeC-CceEEEEecCCcCCCCCCEEEeCCCccEEEcC
Confidence 3579999999999999865443 34 4444443 3478999999855 55679999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCC--------------CCC-------------------------------------------
Q 014228 165 RVTLGRIMNVIGEPIDEKGD--------------LKT------------------------------------------- 187 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~--------------i~~------------------------------------------- 187 (428)
+++||||+|++|+|||+.+. +..
T Consensus 78 pglLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g 157 (586)
T PRK04192 78 PGLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSG 157 (586)
T ss_pred HHhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCce
Confidence 99999999999999997641 110
Q ss_pred --------------------------------ccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCC
Q 014228 188 --------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235 (428)
Q Consensus 188 --------------------------------~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~ 235 (428)
.+.||+++.+|. .+|....++|.||+|+||.|+|++||||++|+|++
T Consensus 158 ~~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~ 236 (586)
T PRK04192 158 TVKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPF 236 (586)
T ss_pred EEEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCC
Confidence 145899999998 99999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 014228 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315 (428)
Q Consensus 236 G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a 315 (428)
|||||+|+++|+++. +.|++||++||||++|++|++++|.+....+.+ +..++||++|+||||+|+.+|++++|+|
T Consensus 237 G~GKTvl~~~iak~a---~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g-~~~m~RTvlVanTSn~Pv~aR~~s~ytg 312 (586)
T PRK04192 237 GSGKTVTQHQLAKWA---DADIVIYVGCGERGNEMTEVLEEFPELIDPKTG-RPLMERTVLIANTSNMPVAAREASIYTG 312 (586)
T ss_pred CCCHHHHHHHHHhcC---CCCEEEEEEcCcChHHHHHHHHHHHhhcccccc-cccceeEEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999874 468999999999999999999999875322222 3468899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-----CCccEeEEEEEE
Q 014228 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-----KKGSITSVQAIY 390 (428)
Q Consensus 316 ~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~-----~~GSIT~i~~v~ 390 (428)
+|+|||||| +|+||+|++||++|||+|+||+|++++|+|+++|||+++++.|++||||||+. ++||||++++|+
T Consensus 313 iTiAEYfRd-~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aVs 391 (586)
T PRK04192 313 ITIAEYYRD-MGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVS 391 (586)
T ss_pred HHHHHHHHH-CCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEEE
Confidence 999999999 79999999999999999999999999999999999999999999999999875 489999999999
Q ss_pred ecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 391 VPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 391 ~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|+||++|||+++|++|+|+||+|||+||++
T Consensus 392 ~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ 422 (586)
T PRK04192 392 PPGGDFSEPVTQNTLRIVKVFWALDAELADR 422 (586)
T ss_pred CCCCCCCcchHHHHHHHhCceEEEcHHHHhC
Confidence 9999999999999999999999999999987
No 25
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=3.4e-78 Score=590.34 Aligned_cols=256 Identities=29% Similarity=0.437 Sum_probs=242.7
Q ss_pred CccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCC
Q 014228 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~ 237 (428)
+++||||++|||||+|++|+|||+++++..++++|+++.+|++++|...+|+|.||||+||.|+|++||||++|||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 47899999999999999999999988887778899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHH---hhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 014228 238 GKTVLIMELINNVA---KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLT 314 (428)
Q Consensus 238 GKTtLa~~ii~n~~---~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~ 314 (428)
|||+|+.+|+++.. +.+.++|||++||||.||+.+|++++.+.+ .++||++|++|+|+||.+|++++|+
T Consensus 81 GKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~--------~l~~tv~v~~t~~~~~~~r~~a~~~ 152 (276)
T cd01135 81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETG--------ALERVVLFLNLANDPTIERIITPRM 152 (276)
T ss_pred ChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcC--------CcceEEEEEecCCCCHHHHHHHHHH
Confidence 99999999887743 123589999999999999999999998876 5679999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEec
Q 014228 315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVP 392 (428)
Q Consensus 315 a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~ 392 (428)
|+|+||||||++|+||||++||+||||+||||+|+++||||+++||||++|++|++|||||++. ++||||+||+|++|
T Consensus 153 a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~~V~~~ 232 (276)
T cd01135 153 ALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP 232 (276)
T ss_pred HHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEEEEEcc
Confidence 9999999999449999999999999999999999999999999999999999999999999986 57999999999999
Q ss_pred CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 393 ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 393 ~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+||++||||+++++||||||||||+||++
T Consensus 233 ~dD~~dpi~~~~~si~DG~ivLsr~la~~ 261 (276)
T cd01135 233 NDDITHPIPDLTGYITEGQIVLDRQLHNR 261 (276)
T ss_pred CCCcCcchHHHHHhhcceEEEEcHHHHhC
Confidence 99999999999999999999999999986
No 26
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.9e-77 Score=628.54 Aligned_cols=326 Identities=28% Similarity=0.427 Sum_probs=292.5
Q ss_pred ceeeEEEEECCEEEEEeCCCCc-hhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp-~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
++|+|.+|.|++|.++ |++ ..+++++.+. +.+++.||+.+ +.+.+.+++|++|.||++|++|..||++++|++|
T Consensus 1 ~~G~V~~v~G~vV~a~---g~~~~~~gE~v~v~-~~~l~gEVI~l-~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lG 75 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAE---NMAGAAMYELVRVG-HDELVGEIIRL-EGDKATIQVYEETSGLTVGDPVLRTGKPLSVELG 75 (591)
T ss_pred CceEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCceEEEEEEE-cCCeEEEEEccCccCCCCCCEEEeCCCccEEEcC
Confidence 4699999999999997 653 2234555443 44688999987 6677889999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCC----C-----------CCCc-----------------------------------------
Q 014228 165 RVTLGRIMNVIGEPIDEKG----D-----------LKTE----------------------------------------- 188 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~----~-----------i~~~----------------------------------------- 188 (428)
++|||||+|++|+|||+.+ . +..+
T Consensus 76 pglLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~ 155 (591)
T TIGR01042 76 PGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRA 155 (591)
T ss_pred HHHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCC
Confidence 9999999999999999753 2 1100
Q ss_pred ----------------------------------cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECC
Q 014228 189 ----------------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG 234 (428)
Q Consensus 189 ----------------------------------~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~ 234 (428)
+.||+++ +|++++|..+++||.||+|+||.|+|+++|||++|||+
T Consensus 156 ~g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg 234 (591)
T TIGR01042 156 RGTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGA 234 (591)
T ss_pred ceEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcC
Confidence 2689998 77899999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccC-cccCCCeEEEEEecCCCCHHHHHHHHH
Q 014228 235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG-DKQADSKCALVYGQMNEPPGARARVGL 313 (428)
Q Consensus 235 ~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~-~~~~~~~tvvv~~t~d~p~~~r~~~~~ 313 (428)
+|||||+|+++|+++. +.|++||++||||+||++|++.+|.+......+ .+..++||++|++|+|+|+.+|++++|
T Consensus 235 ~G~GKT~l~~~lak~s---~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~y 311 (591)
T TIGR01042 235 FGCGKTVISQSLSKYS---NSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIY 311 (591)
T ss_pred CCcCHHHHHHHHHhcc---CcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHH
Confidence 9999999999987753 458999999999999999999999876433322 234689999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-------CCccEeEE
Q 014228 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSV 386 (428)
Q Consensus 314 ~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~-------~~GSIT~i 386 (428)
+|+|+|||||| +|+||+|++||+||||+|+||+|++++|||+++|||+++|+.|++|||||++. ++||||+|
T Consensus 312 tg~tiAEYfRD-~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i 390 (591)
T TIGR01042 312 TGITLAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIV 390 (591)
T ss_pred HHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEE
Confidence 99999999999 79999999999999999999999999999999999999999999999999974 37999999
Q ss_pred EEEEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 387 ~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|++|+||++|||+++|++|+|+||+|||+||++
T Consensus 391 ~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ 425 (591)
T TIGR01042 391 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQR 425 (591)
T ss_pred EEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhC
Confidence 99999999999999999999999999999999987
No 27
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.3e-77 Score=614.94 Aligned_cols=321 Identities=27% Similarity=0.468 Sum_probs=298.2
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeec-cc----eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCc
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~-~~----~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l 159 (428)
..+|+|++|.|.++++. |++.-.++++.+.. .. ....||+++ +++.+.+++|++++||++|+.|+.||+++
T Consensus 26 ~~~g~v~~v~g~~~~~~---g~~~~~ge~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~~~ 101 (451)
T PRK05688 26 VVEGRLLRMVGLTLEAE---GLRAAVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLADTG 101 (451)
T ss_pred ceeeEEEEEEecEEEEe---cCCCCCCCEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCCcc
Confidence 44699999999999997 66555677777632 22 478899997 88889999999999999999999999999
Q ss_pred cccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 160 ~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+||||++|||||+|++|+|||+++++...+++|++..+|++++|....++|.||+++||.++++++||+++|||++|+||
T Consensus 102 ~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GK 181 (451)
T PRK05688 102 RLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGK 181 (451)
T ss_pred EEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCH
Confidence 99999999999999999999999888777788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|||+.++++. ...+++|+++||+|++|+.++++++...+ .++++++|++|+|+||.+|++++++|+|+|
T Consensus 182 STLl~~I~g~---~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~--------~l~rsvvv~atsd~~p~~r~~a~~~a~aiA 250 (451)
T PRK05688 182 SVLLGMMTRF---TEADIIVVGLIGERGREVKEFIEHILGEE--------GLKRSVVVASPADDAPLMRLRAAMYCTRIA 250 (451)
T ss_pred HHHHHHHhCC---CCCCEEEEEEeCcCcHhHHHHHHHHhhcC--------CccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999877653 24578899999999999999999887765 567999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCC--CccEeEEEEEEecCCCCC
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK--KGSITSVQAIYVPADDLT 397 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~--~GSIT~i~~v~~~~dD~~ 397 (428)
||||| +|+||||++||+||||+||||+++++||||+++||||++|+.|++|||||++.+ +||||+||+|++|+||++
T Consensus 251 Eyfrd-~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSITai~tVl~~gdD~~ 329 (451)
T PRK05688 251 EYFRD-KGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQQ 329 (451)
T ss_pred HHHHH-CCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceeeEEEEEEecCCCCC
Confidence 99999 899999999999999999999999999999999999999999999999999875 899999999999999999
Q ss_pred CchhhhhccccCeEEEeehhhhhc
Q 014228 398 DPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 398 dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|||||++++||||||||||+||++
T Consensus 330 dpI~d~~~silDGhIvLsr~La~~ 353 (451)
T PRK05688 330 DPIADSARGVLDGHIVLSRRLAEE 353 (451)
T ss_pred CchHHHHHhhccEEEEEcHHHHhC
Confidence 999999999999999999999987
No 28
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=6.1e-77 Score=613.44 Aligned_cols=318 Identities=31% Similarity=0.519 Sum_probs=292.2
Q ss_pred eeEEEEECCEEEEEeCCCCchhhhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCc
Q 014228 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (428)
Q Consensus 88 G~V~~V~G~vv~v~f~~glp~i~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~ 165 (428)
|+|++|.|++++|++. + +.+ ++++.+. ....+.+||+++. ++.+++++|++++||++|+.|..||++++||||+
T Consensus 1 G~V~~i~G~~i~v~~~-~-~~i-ge~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~ 76 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-K-AKI-GELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGK 76 (413)
T ss_pred CeEEEEECCEEEEEeC-C-CCc-CCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcch
Confidence 8999999999999965 1 233 4554442 2345889999986 6678899999999999999999999999999999
Q ss_pred cccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHH
Q 014228 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 166 ~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ 245 (428)
+|||||+|++|+|||+.+++...+.||+++.+|++++|....+++.||+++||.++|+++||+++|||++|+|||||+..
T Consensus 77 ~lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~ 156 (413)
T TIGR03497 77 GLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGM 156 (413)
T ss_pred hhcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999999998888777789999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 014228 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (428)
Q Consensus 246 ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~ 325 (428)
|+++. +.+..+++++|||++|+.+++++..+. ..++|+++|++|+|+||.+|++++++|+|+|||||+
T Consensus 157 i~~~~---~~~~gvi~~~Ger~~ev~e~~~~~l~~--------~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~- 224 (413)
T TIGR03497 157 IARNA---KADINVIALIGERGREVRDFIEKDLGE--------EGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRD- 224 (413)
T ss_pred HhCCC---CCCeEEEEEEccchHHHHHHHHHHhcc--------cccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 76543 457789999999999999998875433 246799999999999999999999999999999999
Q ss_pred CCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhc
Q 014228 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTF 405 (428)
Q Consensus 326 ~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~ 405 (428)
+|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++.++||||+||+|++|+||++|||+|+++
T Consensus 225 ~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~~~~~ 304 (413)
T TIGR03497 225 QGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAVR 304 (413)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCCCCcceeEEEEEEccCCCCCCcchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCeEEEeehhhhhc
Q 014228 406 AHLDATTVLSRQVRMD 421 (428)
Q Consensus 406 ~~ld~~ivLsR~la~~ 421 (428)
+||||||||||+||++
T Consensus 305 si~dg~ivLsr~la~~ 320 (413)
T TIGR03497 305 GILDGHIVLSRELAAK 320 (413)
T ss_pred ccccEEEEECHHHHhC
Confidence 9999999999999987
No 29
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.4e-76 Score=610.47 Aligned_cols=318 Identities=30% Similarity=0.491 Sum_probs=294.3
Q ss_pred eeEEEEECCEEEEEeCCCCchhhhceEEee--ccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCc
Q 014228 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (428)
Q Consensus 88 G~V~~V~G~vv~v~f~~glp~i~~~l~v~~--~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~ 165 (428)
|+|.+|.|++|+|++. ...+++++.+. .+.....||+.+ +++.+++++|++++||++|+.|+.||++++||||+
T Consensus 1 G~v~~v~g~~v~v~g~---~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~ 76 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL---RAPVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGD 76 (411)
T ss_pred CEEEEEECcEEEEEeC---CCCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcch
Confidence 7999999999999854 33345655543 222478899997 78889999999999999999999999999999999
Q ss_pred cccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHH
Q 014228 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 166 ~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ 245 (428)
++||||+|++|+|||+.+++...++||+++.+|++++|....+++.||+++||.++|+++||+++|+|++|+|||||+..
T Consensus 77 ~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~ 156 (411)
T TIGR03496 77 SLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGM 156 (411)
T ss_pred hhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHH
Confidence 99999999999999998888777889999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 014228 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (428)
Q Consensus 246 ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~ 325 (428)
|+++. ..++.|+++||||++|+.++++++.+.+ .++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 157 I~~~~---~~~~~vi~~iGer~~ev~e~~~~~~~~~--------~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~- 224 (411)
T TIGR03496 157 MARYT---EADVVVVGLIGERGREVKEFIEDILGEE--------GLARSVVVAATADESPLMRLRAAFYATAIAEYFRD- 224 (411)
T ss_pred HhcCC---CCCEEEEEEEecChHHHHHHHHHHhhCC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 77543 3467789999999999999999988775 56799999999999999999999999999999999
Q ss_pred CCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCCCCchhhh
Q 014228 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDLTDPAPAT 403 (428)
Q Consensus 326 ~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~~dpi~~~ 403 (428)
+|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++. ++||||+||+|++|+||++|||+++
T Consensus 225 ~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi~~~ 304 (411)
T TIGR03496 225 QGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADA 304 (411)
T ss_pred CCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCCCCCcchhh
Confidence 79999999999999999999999999999999999999999999999999994 6899999999999999999999999
Q ss_pred hccccCeEEEeehhhhhc
Q 014228 404 TFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 404 ~~~~ld~~ivLsR~la~~ 421 (428)
+++||||||||||+||++
T Consensus 305 ~~~i~dg~ivLsr~la~~ 322 (411)
T TIGR03496 305 ARAILDGHIVLSRELAEQ 322 (411)
T ss_pred hcccccEEEEEchhHHhC
Confidence 999999999999999987
No 30
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.9e-76 Score=611.01 Aligned_cols=322 Identities=30% Similarity=0.489 Sum_probs=297.2
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEee--ccce-eEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVR-LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~--~~~~-~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~ 160 (428)
...+|+|++|.|++++++ |+...+++++.+. .... ...||+.+ .++.+.+++|++++||+.|++|..||++++
T Consensus 22 ~~~~G~V~~v~g~~i~~~---g~~~~~ge~~~i~~~~g~~~~~~eVv~~-~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~ 97 (441)
T PRK09099 22 VRRTGKVVEVIGTLLRVS---GLDVTLGELCELRQRDGTLLQRAEVVGF-SRDVALLSPFGELGGLSRGTRVIGLGRPLS 97 (441)
T ss_pred ceEeeEEEEEECCEEEEe---ccCCCCCCEEEEecCCCCeeeEEEEEEE-ECCEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 345799999999999997 6655556666653 1222 67899987 567788999999999999999999999999
Q ss_pred ccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||||++|||||+|++|+|||+.+++..++++|++..+|++++|...+++|.||+++||.++|+++||+++|||++|+|||
T Consensus 98 v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKT 177 (441)
T PRK09099 98 VPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS 177 (441)
T ss_pred EEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHH
Confidence 99999999999999999999988887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
||+++++.+. ..+.+++++||||++|+++|++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus 178 tLl~~ia~~~---~~d~~vi~~iGer~~ev~ef~~~~~~~~--------~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE 246 (441)
T PRK09099 178 TLMGMFARGT---QCDVNVIALIGERGREVREFIELILGED--------GMARSVVVCATSDRSSIERAKAAYVATAIAE 246 (441)
T ss_pred HHHHHHhCCC---CCCeEEEEEEccChHHHHHHHHHHhhcC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9998887653 3467899999999999999999887664 5679999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCch
Q 014228 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi 400 (428)
|||| +|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||+..++||||+|++|++|+||++|||
T Consensus 247 yfrd-~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~~~GSIT~i~tVl~~~dd~~dpI 325 (441)
T PRK09099 247 YFRD-RGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGETGSITALYTVLAEDESGSDPI 325 (441)
T ss_pred HHHH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCCCCcchheeEEEEecCCCcCCcc
Confidence 9999 899999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014228 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|++++|+||||||||+||++
T Consensus 326 ~d~~~~i~DG~ivLsr~La~~ 346 (441)
T PRK09099 326 AEEVRGILDGHMILSREIAAR 346 (441)
T ss_pred hhhhheecceEEEEcHHHHhC
Confidence 999999999999999999987
No 31
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=6.1e-77 Score=582.31 Aligned_cols=256 Identities=83% Similarity=1.228 Sum_probs=247.6
Q ss_pred CccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCC
Q 014228 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~ 237 (428)
+++||||+++||||+|++|+|||+++++...++|||++.+|++++|...+++|.||||+||.|+|++||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 57899999999999999999999998887778899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 014228 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (428)
Q Consensus 238 GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~t 317 (428)
|||+|+++++++++++|.++|||++||||++|+++|++++.+.+ .++||++|++|+|+||.+|++++|+|++
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~--------~~~~tvvv~~t~d~~~~~r~~~~~~a~~ 152 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESG--------VLSKTALVYGQMNEPPGARARVALTGLT 152 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcC--------CcceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999998888899999999999999999999998876 5679999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCC
Q 014228 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397 (428)
Q Consensus 318 iAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~ 397 (428)
+||||||++|+||||++||+||||+|+||+++++||+|+++||||++|++|++|||||++.++||||++++|++|+||++
T Consensus 153 ~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~~~GSiT~~~~v~~~~dD~~ 232 (274)
T cd01133 153 MAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLT 232 (274)
T ss_pred HHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCCCCcccceEEEEEecCCCCC
Confidence 99999994499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccccCeEEEeehhhhhc
Q 014228 398 DPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 398 dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|||++++++|+||||||||+||++
T Consensus 233 dpi~~~~~~i~dg~ivLsr~la~~ 256 (274)
T cd01133 233 DPAPATTFAHLDATTVLSRAIAEL 256 (274)
T ss_pred CchHHHHHHhcceEEEEcHHHHhC
Confidence 999999999999999999999986
No 32
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4.3e-76 Score=607.17 Aligned_cols=318 Identities=32% Similarity=0.517 Sum_probs=290.2
Q ss_pred eeEEEEECCEEEEEeCCCCch--hhhceEEeec--cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 88 GQVCQVIGAVVDVRFDEGLPP--ILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 88 G~V~~V~G~vv~v~f~~glp~--i~~~l~v~~~--~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
|+|++|.|++++++ |+.. .+++++.+.. ......||+.+ +++.+.+++|++++||++|+.|+.||++++|||
T Consensus 1 G~v~~v~g~~~~v~---g~~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~v 76 (418)
T TIGR03498 1 GRVTAVTGLLIEVR---GLSRAVRLGDRCAIRARDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRP 76 (418)
T ss_pred CEEEEEECcEEEEE---cCCCccCCCCEEEEEcCCCCEEEEEEEEE-cCCeEEEEEccCCcCCCCCCEEEECCCccEEEe
Confidence 79999999999998 6554 3456555542 22467899885 788899999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCc-cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~-~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
|+++||||+|++|+|||+++++... .+||++..+|++++|...+++|.||+++||.++|+++||+++|||++|+|||||
T Consensus 77 g~~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtL 156 (418)
T TIGR03498 77 HPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL 156 (418)
T ss_pred ChhhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHH
Confidence 9999999999999999998887555 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014228 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 243 a~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
+.+|+.+. ..+..+++++|||++|+.+++++....+ .++||++|++|+|+||.+|++++|+|+|+||||
T Consensus 157 l~~I~~~~---~~~~gvi~~iGer~~ev~~~~~~~l~~~--------~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 157 LSMLARNT---DADVVVIALVGERGREVREFLEDDLGEE--------GLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred HHHHhCCC---CCCEEEEEEEeeechHHHHHHHHhhhcc--------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 97776543 3467789999999999999988765443 467999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCCCCch
Q 014228 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDLTDPA 400 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~~dpi 400 (428)
|+ +|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||++. ++||||+||+|++|+||++|||
T Consensus 226 rd-~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd~~dpi 304 (418)
T TIGR03498 226 RD-QGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPV 304 (418)
T ss_pred HH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCCCCCcc
Confidence 99 89999999999999999999999999999999999999999999999999974 5899999999999999999999
Q ss_pred hhhhccccCeEEEeehhhhhc
Q 014228 401 PATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 401 ~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|++++||||||||||+||++
T Consensus 305 ~d~~~si~DG~ivLsr~la~~ 325 (418)
T TIGR03498 305 ADAVRGILDGHIVLDRAIAER 325 (418)
T ss_pred hhhhheeeeeEEEECHHHHhC
Confidence 999999999999999999986
No 33
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=7.8e-76 Score=607.20 Aligned_cols=318 Identities=28% Similarity=0.418 Sum_probs=293.0
Q ss_pred ceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCc
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~ 165 (428)
.+|+|.+|.|.++.+. +....+++++.++. .+...||+.+. ++.+.+++|++++||++|++|..||++++||||+
T Consensus 29 ~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~-~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~ 103 (440)
T PRK06820 29 YRGPIVEIGPTLLRAS---LPGVAQGELCRIEP-QGMLAEVVSIE-QEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGA 103 (440)
T ss_pred EeeEEEEEECcEEEEE---ECCCCcCCEEEEec-CCeEEEEEEEe-CCeEEEEEccCccCCCCCCEEEECCCCcEEEech
Confidence 4699999999999987 43344566666543 24788999884 5668899999999999999999999999999999
Q ss_pred cccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHH
Q 014228 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 166 ~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ 245 (428)
+|||||+|++|+|||+++++ ..+++|++..+|++++|...+++|.||+++||.|+|+++||+++|||++|+|||+|+.+
T Consensus 104 ~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~ 182 (440)
T PRK06820 104 DLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGM 182 (440)
T ss_pred hhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHHH
Confidence 99999999999999998766 55678999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 014228 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (428)
Q Consensus 246 ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~ 325 (428)
|+++ .+.+++|+++||||++|+.++++++.+.+ .+.++++|++++|+||.+|++++++|+|+||||||
T Consensus 183 I~~~---~~~dv~V~~~iGergrEv~ef~e~~l~~~--------~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd- 250 (440)
T PRK06820 183 LCAD---SAADVMVLALIGERGREVREFLEQVLTPE--------ARARTVVVVATSDRPALERLKGLSTATTIAEYFRD- 250 (440)
T ss_pred Hhcc---CCCCEEEEEEEccChHHHHHHHHHhhccC--------CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 7654 25678899999999999999988876654 56799999999999999999999999999999999
Q ss_pred CCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhc
Q 014228 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTF 405 (428)
Q Consensus 326 ~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~ 405 (428)
+|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||++.++||||+|++|++|+||++|||+|+++
T Consensus 251 ~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~~~GSIT~i~tVl~~gdD~~dpI~d~~~ 330 (440)
T PRK06820 251 RGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEVR 330 (440)
T ss_pred cCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCCcceeEEEEEEccCCCCCCcchhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCeEEEeehhhhhc
Q 014228 406 AHLDATTVLSRQVRMD 421 (428)
Q Consensus 406 ~~ld~~ivLsR~la~~ 421 (428)
+||||||||||+||++
T Consensus 331 ~ilDg~ivLsr~La~~ 346 (440)
T PRK06820 331 SLLDGHIVLSRRLAGA 346 (440)
T ss_pred cccceEEEECHHHHhC
Confidence 9999999999999987
No 34
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.2e-75 Score=604.91 Aligned_cols=322 Identities=27% Similarity=0.442 Sum_probs=296.0
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEeec-cc----eeEEEEeeecCCceEEEEEecCccCCcCCCEEEec---
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNT--- 155 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~-~~----~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~T--- 155 (428)
...+|+|++|.|.+|++. |+..-.++++.+.. +. .+.+||+++ +++.+.+++|++++||..|+.|.+|
T Consensus 25 ~~~~G~v~~v~g~~v~~~---g~~~~iG~~c~i~~~~~~~~~~~~~eVvg~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~ 100 (455)
T PRK07960 25 VRRYGRLTRATGLVLEAT---GLQLPLGATCVIERQNGSETHEVESEVVGF-NGQRLFLMPLEEVEGILPGARVYARNIS 100 (455)
T ss_pred cccccEEEEEEEEEEEEe---CCCCCCCCEEEEEeCCCccccceeeeEEEe-cCCEEEEEECCCccCCCCCCEEEECCcc
Confidence 345799999999999997 75555667776532 22 367899998 6777889999999999999999999
Q ss_pred ----CCCccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEE
Q 014228 156 ----GSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231 (428)
Q Consensus 156 ----G~~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~I 231 (428)
|++++||||++|||||+|++|+|||+++++...+++|++..+|++++|....++|.||+|+||.|+++++||+++|
T Consensus 101 ~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I 180 (455)
T PRK07960 101 GEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGL 180 (455)
T ss_pred cccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEE
Confidence 9999999999999999999999999998887777889999999999999999999999999999999999999999
Q ss_pred ECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHH
Q 014228 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARV 311 (428)
Q Consensus 232 fG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~ 311 (428)
||++|+|||||+..|+++. +.+++|+++||+|++|+.++++++.+.+ .+++++||++++|+||.+|+++
T Consensus 181 ~G~sG~GKTTLL~~Ia~~~---~~d~iv~g~Igerg~ev~e~~~~~~~~~--------~~~~tvVv~~~ad~~~~~r~~~ 249 (455)
T PRK07960 181 FAGSGVGKSVLLGMMARYT---QADVIVVGLIGERGREVKDFIENILGAE--------GRARSVVIAAPADVSPLLRMQG 249 (455)
T ss_pred ECCCCCCccHHHHHHhCCC---CCCEEEEEEEEECCeEHHHHHHhhcCcC--------CCceEEEEEECCCCCHHHHHHH
Confidence 9999999999998777542 4577889999999999999888876543 5679999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEE
Q 014228 312 GLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAI 389 (428)
Q Consensus 312 ~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v 389 (428)
+++|+|+|||||| +|+||||++||+||||+|+||+++++||+|+++||||++|++|++|||||++. ++||||+|++|
T Consensus 250 ~~~a~tiAEyfrd-~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSIT~i~tV 328 (455)
T PRK07960 250 AAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTV 328 (455)
T ss_pred HHHHHHHHHHHHH-cCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeeeeeEEEE
Confidence 9999999999998 89999999999999999999999999999999999999999999999999985 68999999999
Q ss_pred EecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 390 YVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 390 ~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|+||++|||+|++++|+||||||||+||++
T Consensus 329 lv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~ 360 (455)
T PRK07960 329 LTEGDDQQDPIADSARAILDGHIVLSRRLAEA 360 (455)
T ss_pred EEcCCCCCcchHHHhhhhcceEEEECHHHHhC
Confidence 99999999999999999999999999999986
No 35
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=2.2e-75 Score=602.77 Aligned_cols=318 Identities=27% Similarity=0.414 Sum_probs=292.0
Q ss_pred ceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCc
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~ 165 (428)
.+|+|++|.|.++++. +....+++++.+.. .+...||+.+.+ +.+.+++|++++||+.|+.|..||++++||||+
T Consensus 21 ~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~-~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~ 95 (433)
T PRK07594 21 RWGRIQDVSATLLNAW---LPGVFMGELCCIKP-GEELAEVVGING-SKALLSPFTSTIGLHCGQQVMALRRRHQVPVGE 95 (433)
T ss_pred eeeEEEEEECCEEEEE---ECCcCCCCEEEEec-CCeEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccEEEeCh
Confidence 4699999999999997 44444567666533 347889999855 556699999999999999999999999999999
Q ss_pred cccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHH
Q 014228 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (428)
Q Consensus 166 ~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ 245 (428)
++||||+|++|+|||++++. ..+++|++..+|+++++...++++.||+++||.++|+++||+++|||++|+|||||++.
T Consensus 96 ~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~ 174 (433)
T PRK07594 96 ALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM 174 (433)
T ss_pred hhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHH
Confidence 99999999999999998764 55678999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 014228 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (428)
Q Consensus 246 ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~ 325 (428)
|+++. +.+.+|++++|||++|+.++++++.+.+ .++++++|++++|+|+.+|++++|+|+|+||||||
T Consensus 175 I~~~~---~~d~~vi~~iGeRgrEv~efl~~~~~~~--------~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd- 242 (433)
T PRK07594 175 LCNAP---DADSNVLVLIGERGREVREFIDFTLSEE--------TRKRCVIVVATSDRPALERVRALFVATTIAEFFRD- 242 (433)
T ss_pred hcCCC---CCCEEEEEEECCCchHHHHHHHHhhccC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 76542 4577899999999999999998876554 56799999999999999999999999999999999
Q ss_pred CCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhc
Q 014228 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTF 405 (428)
Q Consensus 326 ~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~ 405 (428)
+|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||+..++||||+||+|++|+||++|||+|+++
T Consensus 243 ~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~d~~~ 322 (433)
T PRK07594 243 NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVR 322 (433)
T ss_pred CCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCCCCcchheeeeeeecCCCCCCchHHHhh
Confidence 89999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cccCeEEEeehhhhhc
Q 014228 406 AHLDATTVLSRQVRMD 421 (428)
Q Consensus 406 ~~ld~~ivLsR~la~~ 421 (428)
+||||||||||+||++
T Consensus 323 ~ilDG~IvLsr~la~~ 338 (433)
T PRK07594 323 SLLDGHIVLSRRLAER 338 (433)
T ss_pred hhcceEEEEcHHHHhC
Confidence 9999999999999986
No 36
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=9.6e-75 Score=597.65 Aligned_cols=320 Identities=26% Similarity=0.387 Sum_probs=295.1
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeec--cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcccc
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~--~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VP 162 (428)
..+|+|++|.|++++++ |++..+++++.+.. .....+||+.+ +++.+.+++|++++||+.|+.|..|+++++||
T Consensus 18 ~~~g~v~~v~g~~i~~~---g~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~ 93 (434)
T PRK05922 18 RECGLLSRVSGNLLEAQ---GLSACLGELCQISLSKSPPILAEVIGF-HNRTTLLMSLSPIHYVALGAEVLPLRRPPSLH 93 (434)
T ss_pred eeeeEEEEEEccEEEEE---eCCCCCCCEEEEecCCCCeeEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCCcEEE
Confidence 46899999999999997 76655677776531 23477899987 67778899999999999999999999999999
Q ss_pred CCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014228 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 163 VG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
+|++|||||+|++|+|||+.+++...+++|++..+|++++|...+++|.||+|+||.++|+++|||++|||++|+|||||
T Consensus 94 vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTL 173 (434)
T PRK05922 94 LSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSL 173 (434)
T ss_pred cChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHH
Confidence 99999999999999999998888777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014228 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 243 a~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
+..|+++. +.+.++|++||||++|+.+++.++.+.. .++++++|++|+|+||.+|++++++|+|+||||
T Consensus 174 L~~Ia~~~---~~d~gvi~liGerg~ev~eyl~q~~~~~--------~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyf 242 (434)
T PRK05922 174 LSTIAKGS---KSTINVIALIGERGREVREYIEQHKEGL--------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYF 242 (434)
T ss_pred HHHHhccC---CCCceEEEEeCCCCchHHHHHHHHHhhc--------cccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 98777642 4578899999999999999988876553 356899999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhh
Q 014228 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPA 402 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~ 402 (428)
|| +|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++.++||||+|++|++++| ++|||+|
T Consensus 243 rd-~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~~~GSIT~~~tVl~~~~-~~dpi~d 320 (434)
T PRK05922 243 RD-QGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPN-HPDIFTD 320 (434)
T ss_pred HH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCCCCcceeEEEEEEecCC-CCCcccc
Confidence 99 899999999999999999999999999999999999999999999999999989999999999999998 7899999
Q ss_pred hhccccCeEEEeehhhhhc
Q 014228 403 TTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 403 ~~~~~ld~~ivLsR~la~~ 421 (428)
++++||||||||||+||++
T Consensus 321 ~~rsilDGhIvLsr~la~~ 339 (434)
T PRK05922 321 YLKSLLDGHFFLTPQGKAL 339 (434)
T ss_pred chhhhcCcEEEEcHHHHhC
Confidence 9999999999999999875
No 37
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.3e-75 Score=598.64 Aligned_cols=321 Identities=28% Similarity=0.490 Sum_probs=294.1
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEeec-c--ceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-S--VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~-~--~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~ 160 (428)
...+|+|.+|.|++|+++ |+..-+++++.+.. + ....+||+.+ +++.+.+++|++++||+.|++|+.||++++
T Consensus 16 ~~~~G~v~~v~g~~v~~~---g~~~~~ge~~~i~~~~~~~~~~~eVv~~-~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~ 91 (434)
T PRK08472 16 SPRFGSITKISPTIIEAD---GLNPSVGDIVKIESSDNGKECLGMVVVI-EKEQFGISPFSFIEGFKIGDKVFISKEGLN 91 (434)
T ss_pred ceeeeEEEEEEccEEEEE---ecCCCCCCEEEEecCCCCCceEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCceE
Confidence 345799999999999997 65555566666543 1 2477898886 777888999999999999999999999999
Q ss_pred ccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
||||++|||||+|++|+|||+++++...+++|++..+|++++|...++++.||+++||.++++++||+++|+|++|+|||
T Consensus 92 v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKS 171 (434)
T PRK08472 92 IPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKS 171 (434)
T ss_pred EEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHH
Confidence 99999999999999999999998887777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
||+..|+++. +.+++|++++|||++|+.+++++.. .+ .++++++|++|+|+||++|++++++|+++||
T Consensus 172 tLl~~i~~~~---~~~v~vi~~iGergrev~e~~~~~l-~~--------~l~~tvvV~atsddsp~~R~~~~~~a~~iAE 239 (434)
T PRK08472 172 TLMGMIVKGC---LAPIKVVALIGERGREIPEFIEKNL-GG--------DLENTVIVVATSDDSPLMRKYGAFCAMSVAE 239 (434)
T ss_pred HHHHHHhhcc---CCCEEEEEeeCccchhHHHHHHHHh-cC--------cccceEEEEECCCCCHHHhhHHHHHHHHHHH
Confidence 9998887654 3478899999999999998876532 11 3679999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCC-CccEeEEEEEEecCCCCCCc
Q 014228 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~-~GSIT~i~~v~~~~dD~~dp 399 (428)
|||| +|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||++.+ +||||+|++|++|+||++||
T Consensus 240 yFrd-~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~GSIT~~~tVlv~gdD~~dp 318 (434)
T PRK08472 240 YFKN-QGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSDP 318 (434)
T ss_pred HHHH-cCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCCCCceeeEeEEEEecCCCCCCC
Confidence 9998 899999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
|+|++++||||||||||+||++
T Consensus 319 i~d~~~~i~Dg~ivLsr~la~~ 340 (434)
T PRK08472 319 IADQSRSILDGHIVLSRELTDF 340 (434)
T ss_pred chHHhhhhcceEEEEcHHHHhC
Confidence 9999999999999999999987
No 38
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-75 Score=589.03 Aligned_cols=323 Identities=27% Similarity=0.420 Sum_probs=309.5
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
..+.|+|++|.+.++.|+ ||++++ ..|+++++ +.+.+++++++++.|.++++++...|++|+.|+.||+.+.|||
T Consensus 25 ~~~~g~V~sv~DgIa~v~---Gl~~~~-~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpv 99 (504)
T COG0056 25 VKEVGTVISVGDGIARVS---GLENVM-AGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPV 99 (504)
T ss_pred hhccceEEEEecceEEEe---cCchhh-cCceEEec-CCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEec
Confidence 346799999999999997 999987 57777877 6688999999999999999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa 243 (428)
|+++||||+|++|+|+|+++++..+++.|++..+|..++|...++||.|||++||.|+|+|||||.+|+|+.+||||++|
T Consensus 100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA 179 (504)
T COG0056 100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA 179 (504)
T ss_pred chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Q 014228 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (428)
Q Consensus 244 ~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfr 323 (428)
.+.|.||. ...-+|||++||++..++..+++.|.++| ++++|+||++++++|+.++|++||+||++||||+
T Consensus 180 idtIiNQk-~~~v~CIYVAIGQK~stva~vv~tL~e~g--------AmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~ 250 (504)
T COG0056 180 IDTIINQK-GSGVKCIYVAIGQKRSTVANVVRTLEEHG--------AMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFR 250 (504)
T ss_pred HHHHHhcc-cCCcEEEEEEcccchHHHHHHHHHHHHcC--------CccceEEEEecCCcchhhhhhhhhhhhHHHHHHH
Confidence 99999984 55678999999999999999999999997 6789999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCCCCCCc
Q 014228 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 324 d~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~dD~~dp 399 (428)
+ +|+|||+++||+++||.||||+|+|++|||+|++||+++|+.|++|+|||++. ++||||++|++.+.++|++.+
T Consensus 251 ~-~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAy 329 (504)
T COG0056 251 D-NGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAY 329 (504)
T ss_pred h-cCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEeccCceeee
Confidence 9 89999999999999999999999999999999999999999999999999983 689999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
||.++.+|+||||+|+-+|.+.
T Consensus 330 IpTNVISITDGQIfl~t~LFn~ 351 (504)
T COG0056 330 IPTNVISITDGQIFLETDLFNA 351 (504)
T ss_pred cccceEEecCCcEEeehhhhhc
Confidence 9999999999999999999874
No 39
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=2.2e-74 Score=594.55 Aligned_cols=320 Identities=26% Similarity=0.415 Sum_probs=290.4
Q ss_pred ceeeEEEEECCEEEEEeCCCCchhhhceEEeec---cceeE--EEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcc
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLV--LEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~---~~~~~--~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~ 160 (428)
.+|+|++|.|++++++ +...-+++++.+.. +..+. +||+.+ +++.+.+++|++++||..|++|..||++++
T Consensus 6 ~~g~v~~i~g~~i~~~---~~~~~~ge~~~i~~~~~~~~~~~~~evv~~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~ 81 (428)
T PRK08149 6 RLAHPLRIQGPIIEAE---LPDVAIGEICEIRAGWHSNEVIARAQVVGF-QRERTILSLIGNAQGLSRQVVLKPTGKPLS 81 (428)
T ss_pred eeeEEEEEEeeEEEEE---ECCCCcCCEEEEeecCCCCceeeEEEEEEe-eCcEEEEEECCCccCCCCCCEEEEcCCcCE
Confidence 4699999999999998 43334456665532 22333 678876 677788999999999999999999999999
Q ss_pred ccCCccccceEEEEeccccccCC--CCC--CccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCC
Q 014228 161 VPVGRVTLGRIMNVIGEPIDEKG--DLK--TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~--~i~--~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G 236 (428)
||||+++||||+|++|+|+|+.+ +.. ..+++|+++.+|++++|....++|.||+++||.++|+++||+++|||++|
T Consensus 82 v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG 161 (428)
T PRK08149 82 VWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAG 161 (428)
T ss_pred EEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCC
Confidence 99999999999999999999876 332 24678999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 014228 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (428)
Q Consensus 237 ~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ 316 (428)
+|||||+.+|+++. +.+++|+++||+|++|+.++++++.+.+ .++|+++|++|+|+||.+|++++|+|+
T Consensus 162 ~GKTTLl~~i~~~~---~~dv~v~g~Ig~rg~ev~e~~~~~l~~~--------~~~~~~vV~~~sd~p~~~r~~a~~~a~ 230 (428)
T PRK08149 162 CGKTSLMNMLIEHS---EADVFVIGLIGERGREVTEFVESLRASS--------RREKCVLVYATSDFSSVDRCNAALVAT 230 (428)
T ss_pred CChhHHHHHHhcCC---CCCeEEEEEEeeCCccHHHHHHHHhhcc--------cccceEEEEECCCCCHHHHHhHHHHHH
Confidence 99999998777642 4577789999999999999999887764 457999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCC
Q 014228 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (428)
Q Consensus 317 tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~ 396 (428)
++|||||+ +||||||++||+||||+|+||+++++||||+++||||++|++|++|||||++.++||||+|++|++|+||+
T Consensus 231 tiAE~fr~-~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~ 309 (428)
T PRK08149 231 TVAEYFRD-QGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEE 309 (428)
T ss_pred HHHHHHHH-cCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCC
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhccccCeEEEeehhhhhc
Q 014228 397 TDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 397 ~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
+|||+|++++||||||||||+||++
T Consensus 310 ~dpi~d~~~~ilDg~ivLsr~La~~ 334 (428)
T PRK08149 310 PDPIGDEIRSILDGHIYLSRKLAAK 334 (428)
T ss_pred CCCchhhhheeccEEEEEcHHHHhC
Confidence 9999999999999999999999987
No 40
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=4.4e-75 Score=568.32 Aligned_cols=253 Identities=26% Similarity=0.427 Sum_probs=238.6
Q ss_pred ccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCC
Q 014228 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (428)
Q Consensus 159 l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~G 238 (428)
++||||+++||||+|++|+|||+++++..+++|||+..+|++++|..++++|.||+|+||.|+|++||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999988877788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 014228 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (428)
Q Consensus 239 KTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ti 318 (428)
||+|+.+++.++. +...+|||++||||++|+.||++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+
T Consensus 82 Kt~L~l~~i~~~~-~~~v~~V~~~iGer~~ev~e~~~~~~~~~--------~~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 82 KTAIAIDTIINQK-GKKVYCIYVAIGQKASTVAQVVKTLEEHG--------AMEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred ccHHHHHHHHHhc-CCCeEEEEEecccchHHHHHHHHHHHhcC--------ccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 9999655555543 23345699999999999999999999876 46799999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC----CCccEeEEEEEEecCC
Q 014228 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPAD 394 (428)
Q Consensus 319 AEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~----~~GSIT~i~~v~~~~d 394 (428)
|||||+ +|+||||++|||||||+|+||+++++||+|+++||||++|+.+++|+|||++. ++||||++++|++|+|
T Consensus 153 AE~fr~-~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~d 231 (274)
T cd01132 153 GEYFMD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAG 231 (274)
T ss_pred HHHHHH-CCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCC
Confidence 999999 89999999999999999999999999999999999999999999999999975 5899999999999999
Q ss_pred CCCCchhhhhccccCeEEEeehhhhhc
Q 014228 395 DLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 395 D~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|++|||+|++++||||||||||+||++
T Consensus 232 D~~~pi~~~~~~i~dg~ivLsr~la~~ 258 (274)
T cd01132 232 DVSAYIPTNVISITDGQIFLETDLFNK 258 (274)
T ss_pred CcCcchHHHHHhhcCeEEEEcHHHHhC
Confidence 999999999999999999999999986
No 41
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=3.5e-72 Score=580.38 Aligned_cols=320 Identities=30% Similarity=0.509 Sum_probs=292.3
Q ss_pred ceeeEEEEECCEEEEEeCCCCchhhhceEEee-c-cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccC
Q 014228 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (428)
Q Consensus 86 ~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~-~-~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPV 163 (428)
.+|+|.+|.|++++|.+. ...+++++.+. . ...+.+||+++.+ +.+.+++|++++||++|++|..||++++|||
T Consensus 5 ~~G~V~~v~g~~v~v~~~---~~~~ge~~~i~~~~~~~~~~eVi~~~~-~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~v 80 (422)
T TIGR02546 5 VRGRVTEVSGTLLKAVLP---GARVGELCLIRRRDPSQLLAEVVGFTG-DEALLSPLGELHGISPGSEVIPTGRPLSIRV 80 (422)
T ss_pred eeEEEEEEECcEEEEEEC---CCCCCCEEEEeeCCCCeEEEEEEEEcC-CcEEEEEccCccCCCCCCEEEECCCCceEEe
Confidence 479999999999999843 22234555443 1 3358889999866 5577999999999999999999999999999
Q ss_pred CccccceEEEEeccccccCCCCCCcc--ccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhH
Q 014228 164 GRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (428)
Q Consensus 164 G~~lLGRVlD~lG~PiD~~~~i~~~~--~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTt 241 (428)
|+++||||+|++|+|||+.+++.... .|||+..+|++++|...+++|.||+++||.++++++||+++|+|++|+||||
T Consensus 81 g~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKSt 160 (422)
T TIGR02546 81 GEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKST 160 (422)
T ss_pred ChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHH
Confidence 99999999999999999998876653 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 014228 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (428)
Q Consensus 242 La~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEy 321 (428)
|++.|+++. +.+.++++++|+|++|+.++++++...+ .++++++|++++|+|+.+|++++++|+++|||
T Consensus 161 Ll~~I~~~~---~~~~~vi~~iG~~~~ev~~~~~~~~~~~--------~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~ 229 (422)
T TIGR02546 161 LLGMIARGA---SADVNVIALIGERGREVREFIEHHLGEE--------GRKRSVLVVSTSDRPSLERLKAAYTATAIAEY 229 (422)
T ss_pred HHHHHhCCC---CCCEEEEEEEccCCcCHHHHHHHHhccc--------cccceEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 998777643 4578899999999999999887776553 46799999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchh
Q 014228 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP 401 (428)
Q Consensus 322 frd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~ 401 (428)
|++ +|+|||+++||+||||+|+||+++++||||+++||||++|+.|++|||||++.++||||+|++|++|+||++|||+
T Consensus 230 f~~-~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSIT~~~tv~~~~dd~~~pi~ 308 (422)
T TIGR02546 230 FRD-QGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSITALYTVLVEGDDMNDPIA 308 (422)
T ss_pred HHH-CCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCCCCCceeEEEEEeccCCCCCCCch
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCeEEEeehhhhhc
Q 014228 402 ATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 402 ~~~~~~ld~~ivLsR~la~~ 421 (428)
|++++||||||||||+||++
T Consensus 309 ~~~~~i~dg~i~Lsr~la~~ 328 (422)
T TIGR02546 309 DEVRSILDGHIVLSRALAER 328 (422)
T ss_pred hhhhccccEEEEEcHHHHhC
Confidence 99999999999999999987
No 42
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.2e-71 Score=575.84 Aligned_cols=319 Identities=31% Similarity=0.450 Sum_probs=288.5
Q ss_pred CceeeEEEEECCEEEEEeCCCC--chhhhceEEeec-cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccc
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGL--PPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~gl--p~i~~~l~v~~~-~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~V 161 (428)
..+|+|++|.|.++++. |+ ...+++++.++. .....+||+.+ .++.+.+++|++++||+.|+.|.. ++++++
T Consensus 25 ~~~G~v~~v~g~~~~~~---g~~~~~~iGe~~~i~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v 99 (450)
T PRK06002 25 RIGGTVSEVTASHYRVR---GLSRFVRLGDFVAIRADGGTHLGEVVRV-DPDGVTVKPFEPRIEIGLGDAVFR-KGPLRI 99 (450)
T ss_pred ceeEEEEEEeceEEEEE---cCccCCCCCCEEEEECCCCcEEEEEEEE-eCCeEEEEEccCCcCCCCCCEEEe-CCCcee
Confidence 45799999999999997 77 344566666642 22367788886 677788999999999999999999 668999
Q ss_pred cCCccccceEEEEeccccccCCCCCCcc-ccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChh
Q 014228 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEH-YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (428)
Q Consensus 162 PVG~~lLGRVlD~lG~PiD~~~~i~~~~-~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKT 240 (428)
|||++|||||+|++|+|||+.+++...+ ++|+++.+|+++++...++++.||+++||.+.|+++||+++|||++|+|||
T Consensus 100 ~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKT 179 (450)
T PRK06002 100 RPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKS 179 (450)
T ss_pred ecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHH
Confidence 9999999999999999999988876644 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 014228 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (428)
Q Consensus 241 tLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAE 320 (428)
||+.+|+.. ...+..+++++|||++|+.++.++.... .+++++.|++|+|+||.+|++++++|+++||
T Consensus 180 TLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~---------~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAE 247 (450)
T PRK06002 180 TLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLAD---------NLKKAVAVVATSDESPMMRRLAPLTATAIAE 247 (450)
T ss_pred HHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHH---------hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999776543 2356779999999999999887765543 2468999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCCCC
Q 014228 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDLTD 398 (428)
Q Consensus 321 yfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~~d 398 (428)
|||| +|+||||++||+||||+|+||+++++||||+++||||++|++|++|||||++. ++||||+|++|++|+||++|
T Consensus 248 yfrd-~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~d 326 (450)
T PRK06002 248 YFRD-RGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHND 326 (450)
T ss_pred HHHH-cCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCC
Confidence 9999 89999999999999999999999999999999999999999999999999974 58999999999999999999
Q ss_pred chhhhhccccCeEEEeehhhhhc
Q 014228 399 PAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 399 pi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||++++|+||||||||+||++
T Consensus 327 pI~d~~~~i~Dg~ivLsr~la~~ 349 (450)
T PRK06002 327 PVADSIRGTLDGHIVLDRAIAEQ 349 (450)
T ss_pred ccHHHHHhhcceEEEEcHHHHhC
Confidence 99999999999999999999987
No 43
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1.4e-71 Score=577.61 Aligned_cols=322 Identities=30% Similarity=0.481 Sum_probs=293.1
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEeec---cceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~---~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~ 160 (428)
...+|+|++|.|+++++.+. .+. +++++.+.. +..+.+||+++. ++.+.+++|++++||++|++|+.||++++
T Consensus 21 ~~~~G~v~~i~G~~v~~~~~--~~~-~ge~~~i~~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~ 96 (440)
T TIGR01026 21 VKRVGRVTKVKGLLIEAVGP--QAS-VGDLCLIERRGSEGRLVAEVVGFN-GEFVFLMPYEEVEGVRPGSKVLATGEGLS 96 (440)
T ss_pred cceeeEEEEEEeeEEEEEcC--CCC-cCCEEEEeecCCCCcEEEEEEEec-CCEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 35589999999999999853 223 345544431 223788999985 57899999999999999999999999999
Q ss_pred ccCCccccceEEEEeccccccCC-CCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 161 VPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 161 VPVG~~lLGRVlD~lG~PiD~~~-~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
||||+++||||+|++|+|||+.+ ++...+.+|+++.+|++++|...++++.||+++||.++|+++||+++|+|++|+||
T Consensus 97 v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GK 176 (440)
T TIGR01026 97 IKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGK 176 (440)
T ss_pred EEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCH
Confidence 99999999999999999999987 66556678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|||+..|+++. +.+..+++++|+|++|+.++++++...+ .++++++|++++|+||.+|++++++|+++|
T Consensus 177 StLl~~I~~~~---~~~~~vi~~iG~r~~ev~~~~~~~~~~~--------~l~~tvvv~~~~d~~p~~r~~~~~~a~t~A 245 (440)
T TIGR01026 177 STLLGMIARNT---EADVNVIALIGERGREVREFIEHDLGEE--------GLKRSVVVVATSDQSPLLRLKGAYVATAIA 245 (440)
T ss_pred HHHHHHHhCCC---CCCEEEEEEEeecchHHHHHHHHHhccc--------ccceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99998776542 4577799999999999999888765443 467999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCc
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dp 399 (428)
||||+ +|+||||++||+||||+|+||+++++||||+++||||++|+.|++|+|||+..++||||+|++|++++||++||
T Consensus 246 E~frd-~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~dp 324 (440)
T TIGR01026 246 EYFRD-QGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEP 324 (440)
T ss_pred HHHHH-CCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCcc
Confidence 99999 89999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
|+|++++|+||||||||+||++
T Consensus 325 i~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 325 IADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hhhhhccccceEEEEecchhhC
Confidence 9999999999999999999987
No 44
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.4e-71 Score=574.63 Aligned_cols=321 Identities=25% Similarity=0.408 Sum_probs=291.9
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeec-cc-eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcccc
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~-~~-~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VP 162 (428)
..+|+|.+|.|.++++. |+...+++++.+.. +. ....||+.+ .++.+.+++|++++||+.|++|..||++++||
T Consensus 16 ~~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~ 91 (434)
T PRK07196 16 RVAGRLVRVTGLLLESV---GCRLAIGQRCRIESVDETFIEAQVVGF-DRDITYLMPFKHPGGVLGGARVFPSEQDGELL 91 (434)
T ss_pred ceeeEEEEEEcCEEEEe---cCCCCcCCEEEEEeCCCceEEEEEEEe-cCCEEEEEECCCccCCCCCCEEEECCCccEEE
Confidence 44699999999999997 65555667666632 22 478899998 56667799999999999999999999999999
Q ss_pred CCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHH
Q 014228 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (428)
Q Consensus 163 VG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtL 242 (428)
||++|||||+|++|+|||+++++..++.+|++..+|++++|...+++|.||+++||.++++++||+++|||++|+|||||
T Consensus 92 vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTL 171 (434)
T PRK07196 92 IGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVL 171 (434)
T ss_pred cCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccHH
Confidence 99999999999999999999888667778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 014228 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (428)
Q Consensus 243 a~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyf 322 (428)
+.+|++.. ..++.|++.||+|++|+.+++.+..... .+.|++++++++|+|+.+|+.++++++++||||
T Consensus 172 l~~I~g~~---~~dv~vig~IGerg~ev~ef~~~~l~~~--------gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 172 LGMITRYT---QADVVVVGLIGERGREVKEFIEHSLQAA--------GMAKSVVVAAPADESPLMRIKATELCHAIATYY 240 (434)
T ss_pred HHHHhccc---CCCeEEEEEEeeecHHHHHHHHHHhhhc--------ccceEEEEEecCCCChhhhHHHHHHHHHHHHHh
Confidence 97776542 3467788999999999999886644332 356899999999999999999999999999999
Q ss_pred HHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCC-CccEeEEEEEEecCCCCCCchh
Q 014228 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTDPAP 401 (428)
Q Consensus 323 rd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~-~GSIT~i~~v~~~~dD~~dpi~ 401 (428)
++ +|+||||++||+||||+|+||+++++||||+++||||++|+.|++|||||++.+ +||||+||+|++|+||++||||
T Consensus 241 r~-~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~ 319 (434)
T PRK07196 241 RD-KGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIV 319 (434)
T ss_pred hh-ccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchh
Confidence 98 899999999999999999999999999999999999999999999999999864 8999999999999999999999
Q ss_pred hhhccccCeEEEeehhhhhc
Q 014228 402 ATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 402 ~~~~~~ld~~ivLsR~la~~ 421 (428)
|++++||||||||||+||++
T Consensus 320 d~~~~ilDG~ivLsr~la~~ 339 (434)
T PRK07196 320 DCARAVLDGHIVLSRKLAEA 339 (434)
T ss_pred HhhhhhcceEEEEcHHHHhC
Confidence 99999999999999999986
No 45
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.7e-69 Score=557.41 Aligned_cols=319 Identities=27% Similarity=0.402 Sum_probs=291.1
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
..+|+|++|.|.++++. |+....++++.+. +....+||+.+.++ .+.+++|++++||++|+.|..||++++||||
T Consensus 20 ~~~g~v~~~~g~~~~~~---g~~~~ige~~~i~-~~~~~~eV~~~~~~-~~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg 94 (432)
T PRK06793 20 TKVGKVHSVQEQFFVAK---GPKAKIGDVCFVG-EHNVLCEVIAIEKE-NNMLLPFEQTEKVCYGDSVTLIAEDVVIPRG 94 (432)
T ss_pred ceeeEEEEEEEEEEEEE---cCCCCcCCEEEEC-CCCEEEEEEEecCC-cEEEEEccCccCCCCCCEEEECCCccEEEcC
Confidence 44699999999999987 6555556666653 33578899998555 5679999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHH
Q 014228 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~ 244 (428)
+++||||+|++|+|+|+++++...+.+|++..+|++++|....+++.||+++||.++|+++||+++|||++|+|||+|+.
T Consensus 95 ~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtLl~ 174 (432)
T PRK06793 95 NHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLG 174 (432)
T ss_pred HhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHHHH
Confidence 99999999999999999877656677899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Q 014228 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (428)
Q Consensus 245 ~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd 324 (428)
+++.+. +.+..+++++|||++|+.+++++..... .++++++|++++|+||++|++++++|+++|||||+
T Consensus 175 ~Ia~~~---~~~~gvI~~iGerg~ev~e~~~~~l~~~--------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 175 MIAKNA---KADINVISLVGERGREVKDFIRKELGEE--------GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred HHhccC---CCCeEEEEeCCCCcccHHHHHHHHhhhc--------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888764 3466788999999999999987543331 36799999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhh
Q 014228 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT 404 (428)
Q Consensus 325 ~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~ 404 (428)
+|++||||+||+|||++|+||++++++|+|+. |||+++++.+++|+|||++.++||||++|+|++|+||++|||||++
T Consensus 244 -~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~~~GSiT~~~tvlv~~dD~~dpI~d~~ 321 (432)
T PRK06793 244 -QGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLA 321 (432)
T ss_pred -cCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccCCCcceEEEEEEEecCCCCCCcchHHh
Confidence 89999999999999999999999999999996 9999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEeehhhhhc
Q 014228 405 FAHLDATTVLSRQVRMD 421 (428)
Q Consensus 405 ~~~ld~~ivLsR~la~~ 421 (428)
++||||||||||+||++
T Consensus 322 ~si~DG~ivLsr~la~~ 338 (432)
T PRK06793 322 RGILDGHIVLKRELATL 338 (432)
T ss_pred hhhcceEEEEcHHHHhC
Confidence 99999999999999987
No 46
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.5e-68 Score=549.97 Aligned_cols=322 Identities=27% Similarity=0.442 Sum_probs=289.0
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhceEEee-c-cc--eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~-~-~~--~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l 159 (428)
...+|+|++|.|+++++++.. . .+ ++++.+. . .. .+.+||+++.+++ +.+++|++++||++|++|..||+++
T Consensus 16 ~~~~G~v~~i~G~~i~~~~~~-~-~i-ge~~~i~~~~~~~~~~~~EVi~~~~~~-~~l~~~~~~~gl~~g~~V~~tg~~~ 91 (438)
T PRK07721 16 YKRYGKVSRVIGLMIESKGPE-S-SI-GDVCYIHTKGGGDKAIKAEVVGFKDEH-VLLMPYTEVAEIAPGCLVEATGKPL 91 (438)
T ss_pred cceecEEEEEECcEEEEEECC-C-Cc-hheEEEEecCCCCceEEEEEEEEcCCE-EEEEEccCccCCCCCCEEEECCCcc
Confidence 355799999999999999642 1 23 4444432 1 11 4889999996665 7799999999999999999999999
Q ss_pred cccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 160 ~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
+||||++|||||+|++|+|||+.+.....+.+|++..+|++++|....++|.||+++||.++++++||+++|+|++|+||
T Consensus 92 ~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GK 171 (438)
T PRK07721 92 EVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGK 171 (438)
T ss_pred EEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCH
Confidence 99999999999999999999987754444678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|||+..|++.. +.+..++.++|||++|+.+++++.... ..+.++++|++|+|+||.+|++++|+|+|+|
T Consensus 172 StLl~~I~~~~---~~~~gvI~~~Gerg~ev~e~~~~~l~~--------~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iA 240 (438)
T PRK07721 172 STLMGMIARNT---SADLNVIALIGERGREVREFIERDLGP--------EGLKRSIVVVATSDQPALMRIKGAYTATAIA 240 (438)
T ss_pred HHHHHHHhccc---CCCeEEEEEEecCCccHHHHHHhhcCh--------hhhcCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99998776543 346678999999999998887764322 2467999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCc
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dp 399 (428)
||||| +|+||||++||+||||+|+||+++++||||++.||||++|+.+++++||+++.++||||+|++|+++++||+||
T Consensus 241 Eyfr~-~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e~ 319 (438)
T PRK07721 241 EYFRD-QGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEP 319 (438)
T ss_pred HHHHH-CCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCch
Confidence 99999 89999999999999999999999999999999999999999999999999987789999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
++|++++++||||||||+||++
T Consensus 320 i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 320 IADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred hhhhEEEecCEEEEEeccHHHC
Confidence 9999999999999999999987
No 47
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.6e-67 Score=545.51 Aligned_cols=322 Identities=30% Similarity=0.503 Sum_probs=291.4
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeeccc--eeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCcccc
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~--~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VP 162 (428)
..+|+|++|.|+++++.+ .+..+++++.+.... ...+||+++. ++.+.+++|++++||++|+.|..||++++||
T Consensus 22 ~~~G~v~~i~g~~~~~~~---~~~~~ge~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~ 97 (442)
T PRK06315 22 TVVGRITEVVGMLIKAVV---PDVRVGEVCLVKRHGMEPLVTEVVGFT-QNFVFLSPLGELTGVSPSSEVIPTGLPLHIR 97 (442)
T ss_pred eeccEEEEEECCEEEEEE---CCcccCCEEEEecCCCCEEEEEEEEEc-CCeEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 446999999999999984 333445666553322 4788999985 5788999999999999999999999999999
Q ss_pred CCccccceEEEEecccccc--CCCCC-CccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCCh
Q 014228 163 VGRVTLGRIMNVIGEPIDE--KGDLK-TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (428)
Q Consensus 163 VG~~lLGRVlD~lG~PiD~--~~~i~-~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GK 239 (428)
||++|||||+|++|+|||+ ++++. .++.+|++..+|++++|...+++|.||+++||.++++++||+++|+|++|+||
T Consensus 98 vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GK 177 (442)
T PRK06315 98 AGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGK 177 (442)
T ss_pred ecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCc
Confidence 9999999999999999998 66664 44678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 014228 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (428)
Q Consensus 240 TtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiA 319 (428)
|||+..|+++.. +.+..|++++|||++|+.+++.+..... .++++++|++|+++||.+|+..+++|+++|
T Consensus 178 StLl~~I~~~~~--~~~~~vi~liGerg~ev~~~~~~~l~~~--------g~~~svvvvats~q~p~~rlnp~~va~~IA 247 (442)
T PRK06315 178 SSLLGMIARNAE--EADVNVIALIGERGREVREFIEGDLGEE--------GMKRSVIVVSTSDQSSQLRLNAAYVGTAIA 247 (442)
T ss_pred chHHHHhhcccc--cCCceEEEEECCCchHHHHHHHHHHHhc--------CCceEEEEEeCCCCCHHHHhhHHHHHHHHH
Confidence 999988887652 2355788999999999998887644331 356999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCc
Q 014228 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (428)
Q Consensus 320 Eyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dp 399 (428)
||||+ +|++||+++|+++||++|++|+++++++||.+.||||+.|+.|++|||||++.++||||+||+|++++||++||
T Consensus 248 E~~r~-~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~~~GSITai~tVl~~gdD~~dp 326 (442)
T PRK06315 248 EYFRD-QGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDKGTITAFYTVLVAGDDMNEP 326 (442)
T ss_pred HHHHH-cCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCCCCcceeeeEEEEecCCCCCcc
Confidence 99998 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCeEEEeehhhhhc
Q 014228 400 APATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 400 i~~~~~~~ld~~ivLsR~la~~ 421 (428)
|+|++++|+||||||||+||++
T Consensus 327 i~d~~~~i~dg~ivLsr~la~~ 348 (442)
T PRK06315 327 VADEVKSILDGHIVLSNALAQA 348 (442)
T ss_pred cHHHhhhhcceEEEEeccHHHc
Confidence 9999999999999999999987
No 48
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=1.9e-66 Score=520.37 Aligned_cols=252 Identities=34% Similarity=0.585 Sum_probs=239.6
Q ss_pred CccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCC
Q 014228 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~ 237 (428)
+++||||+++||||+|++|+|||+.+++...+.||++..+|++++|....+++.||+++||.++|+++||+++|+|++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 47899999999999999999999998877777899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 014228 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (428)
Q Consensus 238 GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~t 317 (428)
|||||+..|+++. +.+.+++++||||++|+++++.++.+.+ .++|+++|++|+|+||.+|++++++|++
T Consensus 81 GKTtLl~~Ia~~~---~~~~~vi~~iGer~~ev~~~~~~~~~~~--------~l~rtvvv~~t~d~~~~~r~~~~~~a~~ 149 (326)
T cd01136 81 GKSTLLGMIARGT---TADVNVIALIGERGREVREFIEKDLGEE--------GLKRSVVVVATSDESPLLRVKAAYTATA 149 (326)
T ss_pred ChHHHHHHHhCCC---CCCEEEEEEEecCCccHHHHHHHHHhcC--------ccceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9999998777643 3577899999999999999998887664 4579999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCC
Q 014228 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397 (428)
Q Consensus 318 iAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~ 397 (428)
+|||||+ +||||||++||+||||+|+||+++++||+|+++|||+++|+++++|||||++.++||||+|++|++|+||++
T Consensus 150 ~AEyfr~-~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~ 228 (326)
T cd01136 150 IAEYFRD-QGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN 228 (326)
T ss_pred HHHHHHH-cCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccccCeEEEeehhhhhc
Q 014228 398 DPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 398 dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
|||++++++|+||||||||+||++
T Consensus 229 dpi~~~~~~~~dg~ivL~r~la~~ 252 (326)
T cd01136 229 EPIADAVRSILDGHIVLSRALAAA 252 (326)
T ss_pred cchHHhhhhccceEEEEcCcHHHc
Confidence 999999999999999999999986
No 49
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=1.7e-66 Score=520.54 Aligned_cols=227 Identities=29% Similarity=0.443 Sum_probs=213.9
Q ss_pred cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcc
Q 014228 189 HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (428)
Q Consensus 189 ~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~ 268 (428)
+.|||++.+|.. +|...+++|.||+|+||.|+|++||||++|||++|+|||+|+++|+++. +.+++||++||||++
T Consensus 121 ~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~---~~dvvVyv~iGERg~ 196 (369)
T cd01134 121 QKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS---NSDIVIYVGCGERGN 196 (369)
T ss_pred eeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC---CCCEEEEEEeCCChH
Confidence 679999999987 9999999999999999999999999999999999999999999988863 458999999999999
Q ss_pred hHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhH
Q 014228 269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVS 348 (428)
Q Consensus 269 Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis 348 (428)
|+.|++++|.+......+ ...++||++|++|+|+||.+|++++|+|+|+|||||| +|+||||++||++|||+|+||+|
T Consensus 197 Ev~e~l~ef~~l~~~~~~-~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd-~G~dVll~~Ds~tR~A~A~REIs 274 (369)
T cd01134 197 EMTEVLEEFPELTDPVTG-EPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYNVALMADSTSRWAEALREIS 274 (369)
T ss_pred HHHHHHHHHHhhcccccc-CCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcChhHHHHHHHHHH
Confidence 999999999887654432 3468899999999999999999999999999999999 79999999999999999999999
Q ss_pred HhcCCCCCCCCCCCChhHhHHHHHHhhcCC-------CCccEeEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 349 ALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 349 ~llgr~p~~~gyp~~l~~~l~~l~ERa~~~-------~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++++|+|+++|||++++++|++|||||++. ++||||++++|++|+||++|||+++|++|+|+||+|||+||++
T Consensus 275 ~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~ 354 (369)
T cd01134 275 GRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQR 354 (369)
T ss_pred HhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHhC
Confidence 999999999999999999999999999973 4799999999999999999999999999999999999999986
No 50
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.1e-63 Score=552.77 Aligned_cols=166 Identities=30% Similarity=0.428 Sum_probs=156.3
Q ss_pred cCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 014228 254 HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLF 333 (428)
Q Consensus 254 ~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~ 333 (428)
..|+|||++||||++|++|+++++.+....+++ +..++||++|++|||+||.+|++++|+|+|||||||| +|+||||+
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g-~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd-~G~~Vll~ 758 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYDVALM 758 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHHHHHHhhcccccC-ccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEE
Confidence 348899999999999999999999886544443 3478999999999999999999999999999999999 79999999
Q ss_pred EeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-------CCccEeEEEEEEecCCCCCCchhhhhcc
Q 014228 334 IDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSVQAIYVPADDLTDPAPATTFA 406 (428)
Q Consensus 334 iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~-------~~GSIT~i~~v~~~~dD~~dpi~~~~~~ 406 (428)
+||+||||+|+||+|+++||||+++|||+++++.|++|||||++. ++||||++++|++|+||++|||+++|++
T Consensus 759 ~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~ 838 (1017)
T PRK14698 759 ADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLR 838 (1017)
T ss_pred eccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999973 6799999999999999999999999999
Q ss_pred ccCeEEEeehhhhhc
Q 014228 407 HLDATTVLSRQVRMD 421 (428)
Q Consensus 407 ~ld~~ivLsR~la~~ 421 (428)
|+||||+|||+||++
T Consensus 839 i~dg~i~L~~~La~~ 853 (1017)
T PRK14698 839 VVKVFWALDADLARR 853 (1017)
T ss_pred HhCcEEecCHHHHhC
Confidence 999999999999986
No 51
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=3.7e-59 Score=444.15 Aligned_cols=198 Identities=47% Similarity=0.746 Sum_probs=188.3
Q ss_pred ccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCC
Q 014228 212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291 (428)
Q Consensus 212 TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~ 291 (428)
||+|+||.|+|++||||++|||++|+|||+|+++|++|+. .++.||++||||++|+.|+++++.+.+ .+
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~--------~~ 69 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEG--------AL 69 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTT--------GG
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcc--------cc
Confidence 7999999999999999999999999999999999999874 366799999999999999999998876 45
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHH
Q 014228 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGL 371 (428)
Q Consensus 292 ~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l 371 (428)
+|+++|++|+|+||.+|++++++|+++|||||| +|||||+|+||++||++|+||+++++||+|+++|||+++|+.+++|
T Consensus 70 ~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd-~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l 148 (215)
T PF00006_consen 70 ERTVVVAATSDEPPAARYRAPYTALTIAEYFRD-QGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASL 148 (215)
T ss_dssp GGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHH-TTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHH
T ss_pred cccccccccchhhHHHHhhhhccchhhhHHHhh-cCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhH
Confidence 699999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC----CCccEeEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 372 QERITTT----KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 372 ~ERa~~~----~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||++. ++||||++++|++|+||++|||++++++|+||||+|||+||++
T Consensus 149 ~ERag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~ 202 (215)
T PF00006_consen 149 YERAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAER 202 (215)
T ss_dssp HTTSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHT
T ss_pred HHHhhccccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhC
Confidence 9999998 8999999999999999999999999999999999999999986
No 52
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=3.4e-57 Score=464.41 Aligned_cols=325 Identities=28% Similarity=0.423 Sum_probs=290.5
Q ss_pred eeeEEEEECCEEEEEeCCCCchhhhceEEe-eccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCCc
Q 014228 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (428)
Q Consensus 87 ~G~V~~V~G~vv~v~f~~glp~i~~~l~v~-~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG~ 165 (428)
.|+|++|+||+|.++ |+.... ..+++ .++.+++.||+.. ..+.+.+|+|++|.||++|++|.+||+|++|.+|+
T Consensus 2 ~G~i~~isGp~V~a~---gm~~~~-my~~v~Vg~~~L~gEiI~i-~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGP 76 (588)
T COG1155 2 MGKIIRISGPVVVAE---GMEGAK-MYDVVKVGEMGLIGEIIRI-EGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGP 76 (588)
T ss_pred CceEEEEECCEEEEe---cCcCCc-eEEEEEEcCCceeEEEEEE-eCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCc
Confidence 599999999999886 655442 23332 2556899999997 55667799999999999999999999999999999
Q ss_pred cccceEEEEeccccccCC--------------CCCCc-------------------------------------------
Q 014228 166 VTLGRIMNVIGEPIDEKG--------------DLKTE------------------------------------------- 188 (428)
Q Consensus 166 ~lLGRVlD~lG~PiD~~~--------------~i~~~------------------------------------------- 188 (428)
+||+.|+|++.||||... ++..+
T Consensus 77 Gll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~ 156 (588)
T COG1155 77 GLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGK 156 (588)
T ss_pred cHHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceE
Confidence 999999999999996320 11000
Q ss_pred -------------------------------cccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCC
Q 014228 189 -------------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (428)
Q Consensus 189 -------------------------------~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~ 237 (428)
++||+.+.+|- .+++...+||+||.|+||.|+|+.||+...|.||.|+
T Consensus 157 v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~-~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGs 235 (588)
T COG1155 157 VTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPV-KRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGS 235 (588)
T ss_pred EEEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCccc-cccCCCCCcccccceeehhhcccccCccccccCCCCC
Confidence 67999999996 8889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 014228 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (428)
Q Consensus 238 GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~t 317 (428)
|||++.+.++++. +.++.||+|||||++|++|++.+|.+......+. ..+.||+++++|+|+|..+|+.+.|+|+|
T Consensus 236 GKTV~qh~laK~s---dadiVVyigCGERGNEmtevL~eFPeL~Dp~tg~-~lm~RT~liaNTSnMPVAAREasIYtGiT 311 (588)
T COG1155 236 GKTVSQHTLSKLA---DGDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQ-PLMDRTVLIANTSNMPVAAREASIYTGIT 311 (588)
T ss_pred CcEehhhhhhhhc---cCCEEEEEecCCccchHHHHHHhCccccCCCCCC-cccceeeEeecCccchHHHhhhhhhhhhh
Confidence 9999999998864 4589999999999999999999998876544333 36889999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-------CCccEeEEEEEE
Q 014228 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSVQAIY 390 (428)
Q Consensus 318 iAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~-------~~GSIT~i~~v~ 390 (428)
+|||||| +|+||+++-|+.+|||+|.||+|..|+++|+.+|||.+|.+.++++||||+.. +-||+|++++|.
T Consensus 312 iaEY~RD-mGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVS 390 (588)
T COG1155 312 IAEYYRD-MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVS 390 (588)
T ss_pred HHHHHHh-hhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCC
Confidence 9999999 79999999999999999999999999999999999999999999999999862 359999999999
Q ss_pred ecCCCCCCchhhhhccccCeEEEeehhhhhcc
Q 014228 391 VPADDLTDPAPATTFAHLDATTVLSRQVRMDT 422 (428)
Q Consensus 391 ~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~~ 422 (428)
.|++|+++|+.++|..+.-..+-|+++||+|-
T Consensus 391 PpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~r 422 (588)
T COG1155 391 PPGGDFSEPVTQNTLRVVRVFWALDAALANRR 422 (588)
T ss_pred CCCCCcCcccchheeeeeeeecccchhhhhcc
Confidence 99999999999999999999999999999873
No 53
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.8e-56 Score=453.01 Aligned_cols=254 Identities=21% Similarity=0.219 Sum_probs=234.3
Q ss_pred cCCcCCCEEEecCCCccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhccccccee-eccceeeccccc
Q 014228 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQIL-VTGIKVVDLLAP 222 (428)
Q Consensus 144 ~GL~~G~~V~~TG~~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L-~TGikvID~l~p 222 (428)
.||+.|+.|..++++ ++++.+||||+|++|+|+|+.. ...++.+..++.+.+|....+++ .+++|+||.|+|
T Consensus 57 ~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~P 129 (380)
T PRK12608 57 FNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAP 129 (380)
T ss_pred hCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhheee
Confidence 599999999999988 9999999999999999999762 22345666777778888777777 789999999999
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecC
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~ 301 (428)
+|+|||++|+|++|||||||+++++++...++.+++ +++.||||++|+.||++.+. .+|+++++
T Consensus 130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~---------------~~Vvast~ 194 (380)
T PRK12608 130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVK---------------GEVYASTF 194 (380)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHh---------------hhEEeecC
Confidence 999999999999999999999999999877777775 89999999999999988773 25889999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCC-C
Q 014228 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-K 380 (428)
Q Consensus 302 d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~-~ 380 (428)
|+|+..|.+++++++++||||++ +|+||+||+||+||||+||||+++..||+|+ .||++..|+.+.+|+|||++.+ +
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~-~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~~~ 272 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVE-QGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRLFGAARNIEEG 272 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHHHHhcCCCCCC
Confidence 99999999999999999999998 8999999999999999999999999999999 8999999999999999999965 8
Q ss_pred ccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 381 GSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 381 GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||+|+||+|+ +||++|||++++++++||||||||+||++
T Consensus 273 GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~ 314 (380)
T PRK12608 273 GSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADK 314 (380)
T ss_pred cchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhC
Confidence 999999999999 88999999999999999999999999997
No 54
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.7e-56 Score=448.37 Aligned_cols=328 Identities=26% Similarity=0.360 Sum_probs=291.0
Q ss_pred CCceeeEEEEECCEEEEEeCCCCchhhhc-eEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCC-EEEecCCCccc
Q 014228 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTA-LEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQ-RVLNTGSPITV 161 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v~f~~glp~i~~~-l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~-~V~~TG~~l~V 161 (428)
..+|-+|.+|.||++.|+-.+|.. +++ +++.........+-+.....+.+-+|+|++|.||...+ .|+++|+++++
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~eg~~--y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i 81 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVEGAS--YGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKI 81 (463)
T ss_pred cceeeeEEEeccceEEEecccCCC--cceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEE
Confidence 346889999999999998444431 233 33322222233333344567788899999999998665 59999999999
Q ss_pred cCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhH
Q 014228 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (428)
Q Consensus 162 PVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTt 241 (428)
||++++||||+|++|+|||+.+.+.+++..+|+..+-++..|..+.+++.|||++||.|.++.+|||+.||.++|-....
T Consensus 82 ~vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~ 161 (463)
T COG1156 82 PVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE 161 (463)
T ss_pred eecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHH
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc--CcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 014228 242 LIMELINNVAKAH--GGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (428)
Q Consensus 242 La~~ii~n~~~~~--~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~ti 318 (428)
|+.+|+++..... ..+ .||+++|-+..|..-|.++|.+.| +++|+++|.+.+|+|+.+|..+|.+|+|.
T Consensus 162 LaaqIarQA~v~~~~e~favVfaamGit~eea~fF~~~fe~tG--------al~r~vlflnlA~dp~vEri~tPr~aLt~ 233 (463)
T COG1156 162 LAAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETG--------ALDRAVLFLNLADDPAVERIITPRMALTV 233 (463)
T ss_pred HHHHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHHHhhh--------hhhhhHhhhhccCCCceeEecchhHHHHH
Confidence 9999988643211 123 599999999999999999999998 55799999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccEeEEEEEEecCCCC
Q 014228 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDL 396 (428)
Q Consensus 319 AEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSIT~i~~v~~~~dD~ 396 (428)
||||..++++|||+++-|||+||.|.||||+...+.|+++|||++++++|+.+||||++. ++||||.+++.++|.||+
T Consensus 234 AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~DDI 313 (463)
T COG1156 234 AEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDI 313 (463)
T ss_pred HHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEEeeecCCCCc
Confidence 999999899999999999999999999999999999999999999999999999999984 689999999999999999
Q ss_pred CCchhhhhccccCeEEEeehhhhhc
Q 014228 397 TDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 397 ~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||||||.|.+|++|||||||++..+
T Consensus 314 THPIPDlTGYITEGQivl~r~l~~~ 338 (463)
T COG1156 314 THPIPDLTGYITEGQIVLSRDLHRK 338 (463)
T ss_pred CCCCCcccceeccceEEEEhhcccC
Confidence 9999999999999999999998543
No 55
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=1.7e-57 Score=452.79 Aligned_cols=332 Identities=29% Similarity=0.445 Sum_probs=294.1
Q ss_pred ccCCceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccc
Q 014228 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (428)
Q Consensus 82 ~~~~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~V 161 (428)
..+..+|+|.+|+||||.++-+-|. .++ ++.-+.+ .+++.||+.. +.+...++++++|.|+..||+|.+||+|++|
T Consensus 16 ~~es~~G~v~~VSGPVV~a~~M~G~-aMY-ELVrVGh-~~LvGEiIrl-egD~aTIQVYEeTsG~tVgDpvlrTgkPLsv 91 (618)
T KOG1352|consen 16 EEESEYGRVYSVSGPVVVAENMAGC-AMY-ELVRVGH-DELVGEIIRL-EGDMATIQVYEETSGLTVGDPVLRTGKPLSV 91 (618)
T ss_pred hhhhccceEEeccCceEehhcccch-HHH-HHHHcch-HhhhhheeEe-cCceeEEEEEeccCCcccCCchhhcCCcceE
Confidence 5567799999999999998755564 333 3333344 3789999986 5666779999999999999999999999999
Q ss_pred cCCccccceEEEEeccccccCCCC---------------CCc--------------------------------------
Q 014228 162 PVGRVTLGRIMNVIGEPIDEKGDL---------------KTE-------------------------------------- 188 (428)
Q Consensus 162 PVG~~lLGRVlD~lG~PiD~~~~i---------------~~~-------------------------------------- 188 (428)
.+|++++|.|+|++.||+.....+ ..+
T Consensus 92 ELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lp 171 (618)
T KOG1352|consen 92 ELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLP 171 (618)
T ss_pred eeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecC
Confidence 999999999999999998432110 000
Q ss_pred -------------------------------------cccccccCCCcchhcccccceeeccceeeccccccCCCceeEE
Q 014228 189 -------------------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231 (428)
Q Consensus 189 -------------------------------------~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~I 231 (428)
+.||+...|| ..+....+.||+||.|++|.|+|+.+|+...|
T Consensus 172 Pr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqGGTtaI 250 (618)
T KOG1352|consen 172 PRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAI 250 (618)
T ss_pred CccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcCCcccc
Confidence 6799999998 46778899999999999999999999999999
Q ss_pred ECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccC-cccCCCeEEEEEecCCCCHHHHHH
Q 014228 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG-DKQADSKCALVYGQMNEPPGARAR 310 (428)
Q Consensus 232 fG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~-~~~~~~~tvvv~~t~d~p~~~r~~ 310 (428)
.|..|||||++.+.+.+. .+.|++||+|||||++|+.|++++|.|...--.| .+..++||++|++|+|+|..+|..
T Consensus 251 PGAFGCGKTVISQsLSKY---SNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREA 327 (618)
T KOG1352|consen 251 PGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREA 327 (618)
T ss_pred CcccccchHHHHHHHhhc---cCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhh
Confidence 999999999999988764 3679999999999999999999999987532222 234689999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-------CCCccE
Q 014228 311 VGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSI 383 (428)
Q Consensus 311 ~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-------~~~GSI 383 (428)
+.|||+|++||||| +|++|-.+.|+.+|||+|.||||..|.++|.-.|||.+|...|+.+||||++ ++.||+
T Consensus 328 SIYTGITlsEYfRD-mG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsV 406 (618)
T KOG1352|consen 328 SIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSV 406 (618)
T ss_pred hhhhcccHHHHHHh-cCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCcee
Confidence 99999999999999 8999999999999999999999999999999999999999999999999997 479999
Q ss_pred eEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhhcc
Q 014228 384 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMDT 422 (428)
Q Consensus 384 T~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~~ 422 (428)
|++++|.+|+||++||+..+|.+|..-.|-|+++||+|-
T Consensus 407 sIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRK 445 (618)
T KOG1352|consen 407 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 445 (618)
T ss_pred EEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhc
Confidence 999999999999999999999999999999999999984
No 56
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=2.6e-52 Score=404.23 Aligned_cols=325 Identities=29% Similarity=0.420 Sum_probs=288.4
Q ss_pred CCceeeEEEEECCEEEE---EeCCCCchhhhceEEeecc--ceeEEEEeeecCCceEEEEEecCccCCc-CCCEEEecCC
Q 014228 84 KGAIGQVCQVIGAVVDV---RFDEGLPPILTALEVVDHS--VRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGS 157 (428)
Q Consensus 84 ~~~~G~V~~V~G~vv~v---~f~~glp~i~~~l~v~~~~--~~~~~EVv~~l~~~~v~~i~l~~t~GL~-~G~~V~~TG~ 157 (428)
+..|-+|+.|.||+|.. +|+.- ..+. .+.+.++. .+.++||. |+..| +++|++|.|+. .-+.|.+||+
T Consensus 21 rl~y~tv~gvngplvild~vkfp~y-~eiv-~ltlpdgt~r~gqvlev~---g~kav-vqvfegtsgid~k~t~~eftg~ 94 (489)
T KOG1351|consen 21 RLTYRTVSGVNGPLVILDKVKFPKY-AEIV-NLTLPDGSVRSGQVLEVS---GEKAV-VQVFEGTSGIDAKKTTVEFTGE 94 (489)
T ss_pred ceeEeeecccCCceEEEecccccch-hhhe-EEecCCCCeecceEEEec---CCeeE-EEEeccccccccccceEEEecc
Confidence 45689999999998854 44321 1221 23443433 24678876 34444 89999999996 6889999999
Q ss_pred CccccCCccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCC
Q 014228 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (428)
Q Consensus 158 ~l~VPVG~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~ 237 (428)
.++.||++++||||+|+.|+|||.++++-.+++..|...+.++..|..+.|++.|||.+||.|..+.||||+.||..+|.
T Consensus 95 ~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaagl 174 (489)
T KOG1351|consen 95 ILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 174 (489)
T ss_pred cccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHH------hh----cC-cE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCH
Q 014228 238 GKTVLIMELINNVA------KA----HG-GF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305 (428)
Q Consensus 238 GKTtLa~~ii~n~~------~~----~~-~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~ 305 (428)
....++.+|.++.. ++ |. .+ +||+++|...+...-|.++|.|.| .+++++++.+-+|+|.
T Consensus 175 phneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeeng--------sm~~v~lflnlandpt 246 (489)
T KOG1351|consen 175 PHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENG--------SMERVCLFLNLANDPT 246 (489)
T ss_pred ChhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcC--------CccceEEEEecCCCCc
Confidence 99999999988622 11 11 23 499999998888888888998887 5679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC--CCccE
Q 014228 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSI 383 (428)
Q Consensus 306 ~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~--~~GSI 383 (428)
.+|...|..|+|.|||+.++++||||+|+.|++.||+|.||+|+...+.|+++|||++++++|+.+||||++. ++|||
T Consensus 247 ieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsi 326 (489)
T KOG1351|consen 247 IERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSI 326 (489)
T ss_pred hhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999984 78999
Q ss_pred eEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhhcc
Q 014228 384 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRMDT 422 (428)
Q Consensus 384 T~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~~~ 422 (428)
|.++++++|.||+||||||.|.+|++|||+.+|+|.+|.
T Consensus 327 tqipiltmpnddithpipdltgyitegqiyvdrqlhnr~ 365 (489)
T KOG1351|consen 327 TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQ 365 (489)
T ss_pred eeeeeEecCCcccCCCCCcccceeecceEEEehhhhccc
Confidence 999999999999999999999999999999999999874
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.1e-51 Score=419.25 Aligned_cols=256 Identities=19% Similarity=0.246 Sum_probs=224.5
Q ss_pred cCCcCCCEEEecCCCccccCCccccceEEEEecccccc-CCCCCCccccccccCCCcchhcccccc--eeeccceeeccc
Q 014228 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQQ--ILVTGIKVVDLL 220 (428)
Q Consensus 144 ~GL~~G~~V~~TG~~l~VPVG~~lLGRVlD~lG~PiD~-~~~i~~~~~~pi~~~~P~~ler~~~qe--~L~TGikvID~l 220 (428)
-+|+.|+.|...-++.+=.--..-|-+|..++|.+.+. ...+.+++..|++. .+|....+ ++.+++|+||.|
T Consensus 89 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p-----~~R~~le~~~~~~~~~rvID~l 163 (416)
T PRK09376 89 FNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYP-----NERLRLETGNPEDLSTRIIDLI 163 (416)
T ss_pred cCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCCh-----hhcccccCCCCcccceeeeeee
Confidence 49999999998655533111112567999999998875 34555777666654 45554444 588999999999
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEe
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~ 299 (428)
+|+|+|||.+|+||+|||||||++.|+++...+|.+++ +++.||||++|+.++++++. .+||++
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl---------------g~vv~s 228 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK---------------GEVVAS 228 (416)
T ss_pred cccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc---------------CcEEEE
Confidence 99999999999999999999999999998877777776 66899999999999888773 368999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-
Q 014228 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT- 378 (428)
Q Consensus 300 t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~- 378 (428)
|+|+||..|++++++++++||||++ +|+||+||+|||||||+||||+++.+||+|+ .||++..++.+.+|+|||++.
T Consensus 229 t~d~~~~~~~~~a~~~ie~Ae~~~e-~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e 306 (416)
T PRK09376 229 TFDEPAERHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE 306 (416)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC
Confidence 9999999999999999999999997 8999999999999999999999999999999 899999999999999999986
Q ss_pred CCccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 379 KKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 379 ~~GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++||||+++|++++ ++||+|||++++++++||||||||+||++
T Consensus 307 ~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~ 350 (416)
T PRK09376 307 EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEK 350 (416)
T ss_pred CCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhc
Confidence 79999999999999 77999999999999999999999999997
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.5e-50 Score=423.70 Aligned_cols=249 Identities=21% Similarity=0.290 Sum_probs=217.4
Q ss_pred cCCcCCCEEEecCCCccccC-Cc--------cccceEEEEecccccc-CCCCCCccccccccCCCcchhccccc-ceeec
Q 014228 144 EGLVRGQRVLNTGSPITVPV-GR--------VTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQ-QILVT 212 (428)
Q Consensus 144 ~GL~~G~~V~~TG~~l~VPV-G~--------~lLGRVlD~lG~PiD~-~~~i~~~~~~pi~~~~P~~ler~~~q-e~L~T 212 (428)
.+|+.|+.|...- +.|- ++ ..|-||..++|.+.+. ...+.|++..|++ +.+|.... +++.+
T Consensus 331 ~~Lr~Gd~v~G~v---r~p~~~e~~~~r~k~~~l~~v~~vNg~~~e~~~~r~~F~~Ltp~~-----P~~R~~le~e~~~~ 402 (672)
T PRK12678 331 NGLRKGDAVTGAV---RAPREGEQGNQRQKFNPLVRLDSVNGMSPEEAKKRPEFGKLTPLY-----PNERLRLETEPKKL 402 (672)
T ss_pred cCCCCCCEEEEee---cCCCCCccccccceeeeeeeEeeeCCCChHHhccCCCcccCCCCC-----hHHhcccccCcccc
Confidence 3999999999643 3333 33 2677898999988864 3445566666655 45555554 89999
Q ss_pred cceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCC
Q 014228 213 GIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291 (428)
Q Consensus 213 GikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~ 291 (428)
++++||.|+|||+|||++||||||+|||||+++|+++..++|.++. +|++||||++||+||.+.+
T Consensus 403 giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsV-------------- 468 (672)
T PRK12678 403 TTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSV-------------- 468 (672)
T ss_pred cceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhc--------------
Confidence 9999999999999999999999999999999999998877788876 7899999999998874322
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCC-----CCCCCCCCCChhH
Q 014228 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGR-----IPSAVGYQPTLAT 366 (428)
Q Consensus 292 ~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr-----~p~~~gyp~~l~~ 366 (428)
+..||++|+|+||.+|++++|+++++||||++ +|+|||||+||||||++||+++++..|| +|+..+|||+.|+
T Consensus 469 -kgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre-~G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~ 546 (672)
T PRK12678 469 -KGEVIASTFDRPPSDHTTVAELAIERAKRLVE-LGKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFF 546 (672)
T ss_pred -cceEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHH
Confidence 34599999999999999999999999999999 8999999999999999999999999999 6888999999999
Q ss_pred hHHHHHHhhcCCCCccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 367 DLGGLQERITTTKKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 367 ~l~~l~ERa~~~~~GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
.+++++|+ +||||+|+||+|+ +++++|||++++++++||||||||+||++
T Consensus 547 ~~AR~iE~-----gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAer 597 (672)
T PRK12678 547 GAARNIEN-----GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADK 597 (672)
T ss_pred HHHHhhcc-----CccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhC
Confidence 99999994 9999999999999 66999999999999999999999999997
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=2.8e-46 Score=381.22 Aligned_cols=255 Identities=18% Similarity=0.249 Sum_probs=213.2
Q ss_pred cCCcCCCEEEecCCCccccCCcc--ccceEEEEeccccc-cCCCCCCccccccccCCCcchhcccccceeeccceeeccc
Q 014228 144 EGLVRGQRVLNTGSPITVPVGRV--TLGRIMNVIGEPID-EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLL 220 (428)
Q Consensus 144 ~GL~~G~~V~~TG~~l~VPVG~~--lLGRVlD~lG~PiD-~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l 220 (428)
-+|+.|+.|.+.-++.. -++. -|=++-...|.+.+ ..+.+.+++..|++......++. ++-.-++|+||.+
T Consensus 89 ~~lr~gd~v~g~~R~~~--~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~Le~----~~~~~~~R~id~~ 162 (415)
T TIGR00767 89 FNLRTGDTIEGQIRSPK--EGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLET----STEDLSTRVLDLF 162 (415)
T ss_pred cCCCCCCEEEEEEeccc--cHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccceeec----CccccceeeeeeE
Confidence 49999999987544321 1111 12233334555443 24566777778887543323431 1222378999999
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEe
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~ 299 (428)
+|+++||+++|+||+|+|||||+..+++....+|.+++ +++.+|||++|+.|+++.+. ..+|++
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl---------------g~Vvas 227 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK---------------GEVVAS 227 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh---------------ceEEEe
Confidence 99999999999999999999999999988766666654 67899999999999988762 468999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC-
Q 014228 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT- 378 (428)
Q Consensus 300 t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~- 378 (428)
|+|+||..|.++++.+++.|||+++ +|+||+||+||+||||+||||+++.+||+|+ .||||+.|+.+.+|+|||++.
T Consensus 228 t~d~p~~~~~~va~~v~e~Ae~~~~-~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~ 305 (415)
T TIGR00767 228 TFDEPASRHVQVAEMVIEKAKRLVE-HKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGAARNIE 305 (415)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhhcCCCC
Confidence 9999999999999999999999998 8999999999999999999999999999999 899999999999999999985
Q ss_pred CCccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhc
Q 014228 379 KKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 379 ~~GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
++||||+++||+++ +|||+|||++++++++||||||||+||++
T Consensus 306 ~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~ 349 (415)
T TIGR00767 306 EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADR 349 (415)
T ss_pred CCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhC
Confidence 79999999999999 77999999999999999999999999997
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=6.5e-42 Score=332.62 Aligned_cols=192 Identities=23% Similarity=0.334 Sum_probs=177.9
Q ss_pred ceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCCC
Q 014228 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADS 292 (428)
Q Consensus 214 ikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~ 292 (428)
.|+||.|+|+++|||++|+|++|+|||||++.++++....+.+++ +++.+++|++|+.++++++
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------------- 68 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------------- 68 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---------------
Confidence 599999999999999999999999999999999988755556666 4466999999999988876
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHH
Q 014228 293 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQ 372 (428)
Q Consensus 293 ~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ 372 (428)
++++|++++|+||..|+++++.++++||||++ +|++|+||+||+|||++||+|++...|++| ..||||++|+.+.+++
T Consensus 69 ~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~ 146 (249)
T cd01128 69 KGEVIASTFDEPPERHVQVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFF 146 (249)
T ss_pred ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHH
Confidence 46899999999999999999999999999998 799999999999999999999999999999 5799999999999999
Q ss_pred HhhcCC-CCccEeEEEEEEec-CCCCCCchhhhhccccCeEEEeehhhhhcc
Q 014228 373 ERITTT-KKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQVRMDT 422 (428)
Q Consensus 373 ERa~~~-~~GSIT~i~~v~~~-~dD~~dpi~~~~~~~ld~~ivLsR~la~~~ 422 (428)
|||+.. ++||||+++|++++ ++|+.||+.+++++++|+||||||+||++-
T Consensus 147 ~~Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~ 198 (249)
T cd01128 147 GAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR 198 (249)
T ss_pred HHhcCCCCCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC
Confidence 999985 89999999999999 678888999999999999999999999863
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.1e-37 Score=307.06 Aligned_cols=259 Identities=20% Similarity=0.280 Sum_probs=228.5
Q ss_pred cCCcCCCEEEecCCCccccCCccccceEEEEecccccc-CCCCCCccccccccCCCcchhcccccceeeccceeeccccc
Q 014228 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222 (428)
Q Consensus 144 ~GL~~G~~V~~TG~~l~VPVG~~lLGRVlD~lG~PiD~-~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~p 222 (428)
-+|+.||.|.+.-++.+=.--..-|-||--++|++.+. +..+.++...|++....-.++....+..+.| ++||.+.|
T Consensus 92 f~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPlyP~erl~LE~~~~~~~ls~--RviDL~~P 169 (422)
T COG1158 92 FNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENGSTDLST--RVIDLISP 169 (422)
T ss_pred ccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcccCCCCCCcceeeeecCCCcccchh--HHHhhhcc
Confidence 48999999987655444222223556888899999874 4567788999999888888887777777766 99999999
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecC
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~ 301 (428)
+|||||.+|.+||.+|||+|++.|++...++|+++. +..+|+||++||+|+.+.. +..||++|+
T Consensus 170 IGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV---------------~geViaSTF 234 (422)
T COG1158 170 IGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV---------------KGEVVASTF 234 (422)
T ss_pred cCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhh---------------cceEEeecC
Confidence 999999999999999999999999999999999998 6689999999999987765 467999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC-CCC
Q 014228 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-TKK 380 (428)
Q Consensus 302 d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~-~~~ 380 (428)
|+||..|..++.+.+.-|+++.+ +||||++++|+|||+|+||+.+.+..||..+. |.-+..++.-.+++--|.+ .+|
T Consensus 235 Depp~~HvqVAE~viEkAKRlVE-~~kDVVILLDSITRLaRAYN~v~P~SGkvLsG-GvD~nAL~~PKrFFGAARNIEeG 312 (422)
T COG1158 235 DEPPSRHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTVVPSSGKVLSG-GVDANALHRPKRFFGAARNIEEG 312 (422)
T ss_pred CCcchhhHHHHHHHHHHHHHHHH-cCCcEEEEehhHHHHHHHhcccCCCCCCeecC-CcChhhhcCchhhhhhhhccccC
Confidence 99999999999999999999997 89999999999999999999999999998777 4777777777888887776 479
Q ss_pred ccEeEEEEEEecCC-CCCCchhhhhccccCeEEEeehhhhhc
Q 014228 381 GSITSVQAIYVPAD-DLTDPAPATTFAHLDATTVLSRQVRMD 421 (428)
Q Consensus 381 GSIT~i~~v~~~~d-D~~dpi~~~~~~~ld~~ivLsR~la~~ 421 (428)
||+|+++|.++++| .|+|.|+.+++++.+++++|||+||||
T Consensus 313 GSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laer 354 (422)
T COG1158 313 GSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAER 354 (422)
T ss_pred cchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhc
Confidence 99999999999998 899999999999999999999999997
No 62
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.96 E-value=1.8e-29 Score=240.76 Aligned_cols=197 Identities=24% Similarity=0.361 Sum_probs=177.0
Q ss_pred CceeeEEEEECCEEEEEeCCCCchhhhceEEeeccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecCCCccccCC
Q 014228 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (428)
Q Consensus 85 ~~~G~V~~V~G~vv~v~f~~glp~i~~~l~v~~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG~~l~VPVG 164 (428)
.+.|+|.+|.|.+..|+ ||.++. +-|+++|+ ..+.+++.+++.++|.+.+|++..-+++|+.|+.||....||++
T Consensus 19 eEtgrVLsIGdGIArV~---GL~nvQ-AeEmvEFs-sGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg 93 (340)
T KOG1353|consen 19 EETGRVLSIGDGIARVY---GLTNVQ-AEEMVEFS-SGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPL 93 (340)
T ss_pred hhccceEEEcCceeeee---cccccc-hHHHHhhh-ccccchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCch
Confidence 35799999999999997 999985 77888886 56788999999999999999999999999999999999999999
Q ss_pred ccccceEEEEeccccccCCCCCCccccccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHH
Q 014228 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (428)
Q Consensus 165 ~~lLGRVlD~lG~PiD~~~~i~~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~ 244 (428)
+.|||||.|.+|+|+|++|++...+.+ .+.|....|++.||+|++|.++|++|||+.+++|+..+|||.|+.
T Consensus 94 ~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~ 165 (340)
T KOG1353|consen 94 KALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAI 165 (340)
T ss_pred HHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeee
Confidence 999999999999999999998766543 556677889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-------cEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCC
Q 014228 245 ELINNVAKAHG-------GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302 (428)
Q Consensus 245 ~ii~n~~~~~~-------~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d 302 (428)
+.+.|+.+.+. -+|||+.||++...+..+++.+.+.+ +++++++|++|++
T Consensus 166 dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~--------a~~y~ivv~atas 222 (340)
T KOG1353|consen 166 DTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEAD--------AMEYSIVVAATAS 222 (340)
T ss_pred hhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcC--------CceEEEEEEeecc
Confidence 99988764332 36899999999999999999998886 6779999998876
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=3.2e-20 Score=188.14 Aligned_cols=137 Identities=28% Similarity=0.350 Sum_probs=116.4
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGND 272 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~d 272 (428)
.++||..+++++||+||++..++|+.|+..++-.+++|||||||||||||..|+.....+|..++ |+.++.|
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkd------- 88 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKD------- 88 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHH-------
Confidence 48999999999999999999999999999999999999999999999999999887655555566 6777765
Q ss_pred HHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHH-------
Q 014228 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS------- 345 (428)
Q Consensus 273 l~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~r------- 345 (428)
+++.+|. |+.++. .|+.++||+||||||+++||
T Consensus 89 -lr~i~e~--------------------------------------a~~~~~-~gr~tiLflDEIHRfnK~QQD~lLp~v 128 (436)
T COG2256 89 -LREIIEE--------------------------------------ARKNRL-LGRRTILFLDEIHRFNKAQQDALLPHV 128 (436)
T ss_pred -HHHHHHH--------------------------------------HHHHHh-cCCceEEEEehhhhcChhhhhhhhhhh
Confidence 5666665 777776 69999999999999999999
Q ss_pred ------------------HhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCC
Q 014228 346 ------------------EVSALLGRIPSAVGYQPTLATDLGGLQERITTT 378 (428)
Q Consensus 346 ------------------eis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~ 378 (428)
.++++++|....+ +.+---.++..++.||..+
T Consensus 129 E~G~iilIGATTENPsF~ln~ALlSR~~vf~-lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 129 ENGTIILIGATTENPSFELNPALLSRARVFE-LKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCeEEEEeccCCCCCeeecHHHhhhhheee-eecCCHHHHHHHHHHHHhh
Confidence 5689999977766 4444456999999997654
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.63 E-value=3.9e-16 Score=156.76 Aligned_cols=141 Identities=23% Similarity=0.298 Sum_probs=104.5
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl 273 (428)
+++||..+++.++|+|+++....|..++..++-.++++||||||||||||+.|+++..+....+.-..+......++.++
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHH
Confidence 48999999999999999999999999999999999999999999999999988887543221222233444444444333
Q ss_pred HHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHH--------
Q 014228 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS-------- 345 (428)
Q Consensus 274 ~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~r-------- 345 (428)
+ |. |+......+++++|||||||||+++||
T Consensus 210 f----e~--------------------------------------aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE 247 (554)
T KOG2028|consen 210 F----EQ--------------------------------------AQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE 247 (554)
T ss_pred H----HH--------------------------------------HHHHHhhhcceeEEEeHHhhhhhhhhhhcccceec
Confidence 3 32 211112268899999999999999999
Q ss_pred -----------------HhHHhcCCCCCCCCCCCChhHhHHHHHHhhcC
Q 014228 346 -----------------EVSALLGRIPSAVGYQPTLATDLGGLQERITT 377 (428)
Q Consensus 346 -----------------eis~llgr~p~~~gyp~~l~~~l~~l~ERa~~ 377 (428)
-+++|++|++..+ ...---..+-.++-||..
T Consensus 248 ~G~I~lIGATTENPSFqln~aLlSRC~Vfv-LekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 248 NGDITLIGATTENPSFQLNAALLSRCRVFV-LEKLPVNAVVTILMRAIA 295 (554)
T ss_pred cCceEEEecccCCCccchhHHHHhccceeE-eccCCHHHHHHHHHHHHH
Confidence 5688999988776 233233466778888643
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.38 E-value=2.9e-13 Score=129.57 Aligned_cols=102 Identities=24% Similarity=0.356 Sum_probs=63.2
Q ss_pred ccCCCcchhcccccceeeccceeecccccc--CCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEe-ecCCcchH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPY--QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG-VGERTREG 270 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pi--grGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~g-iGeR~~Ev 270 (428)
.+.||..+++++||+++....+++-..... ..-.+++||||||+||||||..|++.... .+.++.+ .=++..++
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~~~~sg~~i~k~~dl 92 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV---NFKITSGPAIEKAGDL 92 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----EEEEECCC--SCHHH
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC---CeEeccchhhhhHHHH
Confidence 478999999999999999887765444322 23468999999999999999988887532 3344443 11222222
Q ss_pred HHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHh
Q 014228 271 NDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV 347 (428)
Q Consensus 271 ~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~rei 347 (428)
.. .+.. .+++.+||+||||||++++||+
T Consensus 93 ~~------------------------------------------------il~~-l~~~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 93 AA------------------------------------------------ILTN-LKEGDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp HH------------------------------------------------HHHT---TT-EEEECTCCC--HHHHHH
T ss_pred HH------------------------------------------------HHHh-cCCCcEEEEechhhccHHHHHH
Confidence 11 1111 2456699999999999999987
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.20 E-value=1.2e-09 Score=95.96 Aligned_cols=160 Identities=33% Similarity=0.486 Sum_probs=113.1
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r 308 (428)
++|+|++|+|||+++..++..... ....++|....+...+..+....+.... ..++..++....+......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 72 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKG--------ALDNLIIVFATADDPAAAR 72 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhcc--------ccccEEEEEcCCCCCcHHH
Confidence 579999999999999999887654 3445577777666555543332222221 2234555555555544443
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEeEEEE
Q 014228 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQA 388 (428)
Q Consensus 309 ~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT~i~~ 388 (428)
.. .++.++.. ..+..++++||++.+.+...+. ..+++..+...+..+++++. +..+|.+.+
T Consensus 73 ~~------~~~~~~~~-~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~---~~~~~vv~~ 133 (165)
T cd01120 73 LL------SKAERLRE-RGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR---KGGVTVIFT 133 (165)
T ss_pred HH------HHHHHHHh-CCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHh---cCCceEEEE
Confidence 33 33556555 6778899999999998776543 22466667778888888863 368999999
Q ss_pred EEecCCCCCCc----hhhhhccccCeEEEeeh
Q 014228 389 IYVPADDLTDP----APATTFAHLDATTVLSR 416 (428)
Q Consensus 389 v~~~~dD~~dp----i~~~~~~~ld~~ivLsR 416 (428)
...+.++..+| ....+....|+-|+|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 134 LQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EecCCccccCcccccCccceeeecceEEEEeC
Confidence 99999988888 88889999999999986
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.96 E-value=9.6e-10 Score=121.67 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=52.1
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.||..++++.+|+++....+.+..++..++...++|+||||||||||++.+++..
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 477999999999999999888889999999999999999999999999999888764
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.95 E-value=6.8e-10 Score=115.56 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=52.3
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.||..++++++|+++....+.+..++.-++...++|+||||||||||++.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888889999988999999999999999999999888764
No 69
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.67 E-value=5.6e-08 Score=76.12 Aligned_cols=66 Identities=44% Similarity=0.569 Sum_probs=53.1
Q ss_pred EEEEECCEEEEEeCCC-CchhhhceEEe--eccceeEEEEeeecCCceEEEEEecCccCCcCCCEEEecC
Q 014228 90 VCQVIGAVVDVRFDEG-LPPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG 156 (428)
Q Consensus 90 V~~V~G~vv~v~f~~g-lp~i~~~l~v~--~~~~~~~~EVv~~l~~~~v~~i~l~~t~GL~~G~~V~~TG 156 (428)
|++|.|++++++|..+ +|.+++.+.+. ++. +..++.+.+++++.+++|+|++++||++|++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~-~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFG-NGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEET-TEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccce-eeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 6899999999988654 56666666654 333 455666677799999999999999999999999986
No 70
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.53 E-value=3.9e-08 Score=96.99 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=95.3
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCC-----ceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEE-EeecCCcc
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-----GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF-AGVGERTR 268 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrG-----qri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~-~giGeR~~ 268 (428)
..||+.++++.+|+.+- .-++.++...|. -.++||||||.||||||+.|++.+.. .+.+. +.+=||..
T Consensus 19 ~lRP~~l~efiGQ~~vk---~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n~k~tsGp~leK~g 92 (332)
T COG2255 19 SLRPKTLDEFIGQEKVK---EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---NLKITSGPALEKPG 92 (332)
T ss_pred ccCcccHHHhcChHHHH---HHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---CeEecccccccChh
Confidence 46899999999999885 445556655444 35899999999999999999887632 22232 22223333
Q ss_pred hHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhH
Q 014228 269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVS 348 (428)
Q Consensus 269 Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis 348 (428)
+..-++.. -..+-+||+|||||.+.+--|+=
T Consensus 93 DlaaiLt~-------------------------------------------------Le~~DVLFIDEIHrl~~~vEE~L 123 (332)
T COG2255 93 DLAAILTN-------------------------------------------------LEEGDVLFIDEIHRLSPAVEEVL 123 (332)
T ss_pred hHHHHHhc-------------------------------------------------CCcCCeEEEehhhhcChhHHHHh
Confidence 33222221 22344899999999999988872
Q ss_pred HhcCCCCCCCCCCCChhHhHHH-HHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhh
Q 014228 349 ALLGRIPSAVGYQPTLATDLGG-LQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRM 420 (428)
Q Consensus 349 ~llgr~p~~~gyp~~l~~~l~~-l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~ 420 (428)
-|..+=|..++. +++ ---|..+.+=---|.+++. +-.|-++.|.-|-+.=+..-..|-..+|++
T Consensus 124 -----YpaMEDf~lDI~--IG~gp~Arsv~ldLppFTLIGAT-Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~ 188 (332)
T COG2255 124 -----YPAMEDFRLDII--IGKGPAARSIRLDLPPFTLIGAT-TRAGMLTNPLRDRFGIIQRLEFYTVEELEE 188 (332)
T ss_pred -----hhhhhheeEEEE--EccCCccceEeccCCCeeEeeec-cccccccchhHHhcCCeeeeecCCHHHHHH
Confidence 001111111110 000 0001111122234667664 667788888888876666666555555543
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.4e-07 Score=98.33 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=46.2
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.||..+++..+|+++ .+.+..++..++... ++|+|||||||||+|+.+++..
T Consensus 6 ~kyRP~~~~divGq~~i---~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV---KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHCCCCHHHccCcHHH---HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999998 466777777777754 7999999999999999998765
No 72
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=98.47 E-value=7.8e-08 Score=69.56 Aligned_cols=47 Identities=77% Similarity=0.920 Sum_probs=35.2
Q ss_pred ChhhhHhHHhhhhhcccCCCCCCCCCCcc--CCCcccccCCcchhhhhh
Q 014228 1 MASRRLLSSLLRSSVRRSPSKSSLSNSSV--FSPAATRRASPYGHLLSR 47 (428)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 47 (428)
||+||+|++|+|++.|++.+++.|.+++. ..|.+.++++|+|++|+|
T Consensus 1 MASRR~lSSlLRSssrr~~sks~l~~~~pr~~sp~p~~R~SP~gyLLnR 49 (49)
T PF11421_consen 1 MASRRLLSSLLRSSSRRSASKSPLSNSSPRLPSPSPASRASPYGYLLNR 49 (49)
T ss_dssp ---SHHHHHHHHHHHTTSSSST-GGGGTTTTSTTT-STT-SHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcccccccccccCCCCCCCccccCCCCccchhccC
Confidence 99999999999999999999888776544 555668899999999986
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.9e-07 Score=97.44 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=46.5
Q ss_pred ccccc-cCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 190 YLPIH-REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 190 ~~pi~-~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.|+. +.||..+++..+|+++.. .|..++..++- +.++|+||+||||||+|+.+++...
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~---~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIG---ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34444 569999999999999874 45566666664 4589999999999999999988753
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.4e-07 Score=101.70 Aligned_cols=54 Identities=26% Similarity=0.223 Sum_probs=45.4
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.||..+++++||+++. +.|..++..++-... +|+||+||||||+++.+++...
T Consensus 9 KyRP~tFddIIGQe~Iv---~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 9 KWRPATFEQMVGQSHVL---HALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HhCCCCHHHhcCcHHHH---HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 67999999999999987 445666777777776 8999999999999999988753
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.38 E-value=1.2e-06 Score=73.45 Aligned_cols=145 Identities=22% Similarity=0.126 Sum_probs=77.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
+++.++|+||+|+||||++..++++..... ..++....+...+....... ... ...+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~ 59 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LII------------------VGGKKA 59 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhh------------------hhccCC
Confidence 468899999999999999999988764322 12222222333332221111 000 001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHHhhcCCCCccEe
Q 014228 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSIT 384 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~ERa~~~~~GSIT 384 (428)
...+.......++.|++. +..++|+||++++....+......... .....+. .....+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~-----~~~viiiDei~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~ 118 (148)
T smart00382 60 SGSGELRLRLALALARKL-----KPDVLILDEITSLLDAEQEALLLLLEE-------------LRLLLLL---KSEKNLT 118 (148)
T ss_pred CCCHHHHHHHHHHHHHhc-----CCCEEEEECCcccCCHHHHHHHHhhhh-------------hHHHHHH---HhcCCCE
Confidence 233444444555555543 257999999999988877664433221 0001111 1234456
Q ss_pred EEEEEEecCCCCCCchhhhhccccCeEEEee
Q 014228 385 SVQAIYVPADDLTDPAPATTFAHLDATTVLS 415 (428)
Q Consensus 385 ~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLs 415 (428)
.+.+... ..++.+...+..+|.++.+.
T Consensus 119 ~i~~~~~----~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 119 VILTTND----EKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred EEEEeCC----CccCchhhhhhccceEEEec
Confidence 6666543 34555556666777777654
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.1e-06 Score=94.71 Aligned_cols=53 Identities=23% Similarity=0.149 Sum_probs=44.6
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++..||+++.. .+...+..++... ++|+||+|+||||+|..+++..
T Consensus 9 KyRP~~f~diiGq~~~v~---~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALN---SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHCcCcHHHhcCcHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999874 4556677777766 6899999999999999998865
No 77
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.33 E-value=1e-05 Score=78.94 Aligned_cols=187 Identities=19% Similarity=0.157 Sum_probs=107.7
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcccccc
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL 285 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~ 285 (428)
+.+.|||.-+|.++- +-+|..++|.|+||+|||+++.+.+.+.++. +.-++|+...|...++.+..+. -|.. .
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~---~g~d-~ 77 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARS---FGWD-L 77 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHH---cCCC-H
Confidence 467799999999998 7899999999999999999999999988654 6778999999988887555442 2210 0
Q ss_pred Cc-ccCCCeEEEEEecCCCCHH---H--HHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCC
Q 014228 286 GD-KQADSKCALVYGQMNEPPG---A--RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVG 359 (428)
Q Consensus 286 ~~-~~~~~~tvvv~~t~d~p~~---~--r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~g 359 (428)
.. .+...-.++-..+...+.. . -.......-.+-+...+ .+ ...+++|+++.+......-... |
T Consensus 78 ~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~-~~-~~~~ViDsi~~~~~~~~~~~~~--r------ 147 (260)
T COG0467 78 EVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEK-EG-ADRVVIDSITELTLYLNDPALV--R------ 147 (260)
T ss_pred HHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHH-hC-CCEEEEeCCchHhhhcCchHHH--H------
Confidence 00 0001111211111111110 0 11223344445555555 34 6788999999654433321110 0
Q ss_pred CCCChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhccccCeEEEeehhhhh
Q 014228 360 YQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQVRM 420 (428)
Q Consensus 360 yp~~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~la~ 420 (428)
.....+.++.+ +.+ +|++-+...+.+...+. ...-.+.||.|.|+....+
T Consensus 148 ---~~~~~l~~~~~-----~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~ 197 (260)
T COG0467 148 ---RILLLLKRFLK-----KLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIE 197 (260)
T ss_pred ---HHHHHHHHHHH-----hCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeeccc
Confidence 01222333332 234 77777665443322221 2334488999999875544
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.4e-06 Score=95.50 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl 273 (428)
+.||..+++++||+++.. .|-..+..++-... +|+|++|+||||++..+++.....+. . ....||+ ...
T Consensus 9 KyRP~~f~divGQe~vv~---~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~-~~~pCg~-----C~~ 78 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLT---ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-I-TATPCGE-----CDN 78 (647)
T ss_pred HhCCCCHHHhcCcHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-C-CCCCCCC-----CHH
Confidence 459999999999999874 55566666666664 89999999999999999876532110 0 0012332 122
Q ss_pred HHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH-HHHHhHHhcC
Q 014228 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ-ANSEVSALLG 352 (428)
Q Consensus 274 ~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~-A~reis~llg 352 (428)
.+++.+..-. . ++.+..++.--...++-..-- +.|.-. .|+..++||||+|+++. +++.+=-.+.
T Consensus 79 C~~i~~g~~~---------D-~ieidaas~~~VddiR~li~~---~~~~p~-~g~~KV~IIDEah~Ls~~a~NALLKtLE 144 (647)
T PRK07994 79 CREIEQGRFV---------D-LIEIDAASRTKVEDTRELLDN---VQYAPA-RGRFKVYLIDEVHMLSRHSFNALLKTLE 144 (647)
T ss_pred HHHHHcCCCC---------C-ceeecccccCCHHHHHHHHHH---HHhhhh-cCCCEEEEEechHhCCHHHHHHHHHHHH
Confidence 3333222100 0 111121111122333322211 222222 68889999999999997 5555544556
Q ss_pred CCCCC
Q 014228 353 RIPSA 357 (428)
Q Consensus 353 r~p~~ 357 (428)
+||..
T Consensus 145 EPp~~ 149 (647)
T PRK07994 145 EPPEH 149 (647)
T ss_pred cCCCC
Confidence 65533
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.8e-06 Score=94.43 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=45.1
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCc-eeEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG-KIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGq-ri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.||..+++..||+++. +.|..++..++-. -++|+||+|+||||+|..+++...
T Consensus 7 rKyRPktFddVIGQe~vv---~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVS---RALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999984 6667777667644 559999999999999999988753
No 80
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.5e-06 Score=96.11 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=44.5
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..++++++|+++. +.|..++..++.... +|+|++||||||++..+++...
T Consensus 8 rKYRPqtFdEVIGQe~Vv---~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHhCCCcHHHHcCcHHHH---HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356999999999999986 455566666665554 8899999999999999988753
No 81
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.24 E-value=3e-06 Score=80.62 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=95.5
Q ss_pred eccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcc
Q 014228 211 VTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDK 288 (428)
Q Consensus 211 ~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~ 288 (428)
.|||.-+|.++ -+-+|.-++|.|+||+|||+|+.+++.+.+++.++-++|+..-|..+++ ++.+..-|. +..+.
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l---~~~~~s~g~-d~~~~ 77 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEEL---IENMKSFGW-DLEEY 77 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHH---HHHHHTTTS--HHHH
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHH---HHHHHHcCC-cHHHH
Confidence 58999999999 6778999999999999999999999887766546677888887755444 555544431 11000
Q ss_pred cCCCeEEEEEecCCCCHH-HHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHh
Q 014228 289 QADSKCALVYGQMNEPPG-ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATD 367 (428)
Q Consensus 289 ~~~~~tvvv~~t~d~p~~-~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~ 367 (428)
....+-. +.....+... .....-...-.+.+...+ .+. ..+++|+++-+ .....- ..+...
T Consensus 78 ~~~g~l~-~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-~~~-~~vVIDsls~l-~~~~~~--------------~~~r~~ 139 (226)
T PF06745_consen 78 EDSGKLK-IIDAFPERIGWSPNDLEELLSKIREAIEE-LKP-DRVVIDSLSAL-LLYDDP--------------EELRRF 139 (226)
T ss_dssp HHTTSEE-EEESSGGGST-TSCCHHHHHHHHHHHHHH-HTS-SEEEEETHHHH-TTSSSG--------------GGHHHH
T ss_pred hhcCCEE-EEecccccccccccCHHHHHHHHHHHHHh-cCC-CEEEEECHHHH-hhcCCH--------------HHHHHH
Confidence 0111233 3322222110 000001111233444443 222 68999999877 221111 011222
Q ss_pred HHHHHHhhcCCCCccEeEEEEEEecCCCCCCchhhhhccccCeEEEeehh
Q 014228 368 LGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417 (428)
Q Consensus 368 l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~~~~~~~ld~~ivLsR~ 417 (428)
+-.++.... +.| +|++.+...+.+.-.+.......++.|+-|.|+..
T Consensus 140 l~~l~~~l~--~~~-~t~llt~~~~~~~~~~~~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 140 LRALIKFLK--SRG-VTTLLTSEMPSGSEDDGTFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHHHH--HTT-EEEEEEEEESSSSSSSSSTSHHHHHSSEEEEEEEE
T ss_pred HHHHHHHHH--HCC-CEEEEEEccccCcccccccchhhhcccEEEEEEEE
Confidence 333333331 123 67788877654322222111122378999999853
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-06 Score=94.67 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=45.9
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++-||..+++++||+++. +.|-.++..++.... +|+|++|+||||+++.+++...
T Consensus 8 ~KyRP~~f~dviGQe~vv---~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVV---QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHHCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466999999999999986 567777777777655 8999999999999999987653
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.4e-06 Score=91.07 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=44.0
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCc-eeEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGG-KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGq-ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++.++|+++. +.+-..+..++-. .++|+||+|+||||+|..+++..
T Consensus 6 KyRP~~f~dliGQe~vv---~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLV---RILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 56899999999999986 4555666666654 79999999999999999998754
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.2e-06 Score=91.84 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=44.7
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++-||..+++.+||+++. +.+..++..++-.. ++|+||+||||||+|..+++..
T Consensus 8 ~kyRP~~f~divGq~~v~---~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVV---RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHHCCCCHHHhcCCHHHH---HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 456999999999999986 45666666666655 6899999999999999998865
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=98.21 E-value=3.1e-06 Score=85.18 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=46.5
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.||..+++..+|+++.. .|..++..++.+.++|+||||+||||++..+++..
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~---~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVS---RLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHH---HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45779999999999998754 45566677788899999999999999999998875
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.6e-06 Score=92.96 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=45.1
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.||..++++++|+++. +.|-.++..++-... +|+|++|+||||+++.+++...
T Consensus 9 KYRPqtFddVIGQe~vv---~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVV---RALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HhCCCcHHHHcCcHHHH---HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999987 456666667776665 8999999999999999988753
No 87
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.7e-06 Score=85.99 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=45.7
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..+++..||+.+. +.+..++..++-.. ++|+||+|+||||+|..+++...
T Consensus 8 ~k~RP~~~~eiiGq~~~~---~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT---RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HhcCCCcHhhccChHHHH---HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999885 56777777666655 88999999999999999988753
No 88
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.11 E-value=5.5e-05 Score=71.49 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=41.3
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEe
Q 014228 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~g 262 (428)
+.||+.-+|.++. +.+|.-+.|+|+||+|||+++..++.+.++. ..-++|..
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~ 54 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYID 54 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 4589999999986 6678889999999999999999999887543 23344543
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=6.1e-06 Score=90.77 Aligned_cols=53 Identities=25% Similarity=0.204 Sum_probs=43.5
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+-||..++++++|+++. +.|..++..++- +.++|+|++|+||||++..+++..
T Consensus 9 KYRP~tFddIIGQe~vv---~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 9 KWRPKTFADLVGQEHVV---KALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HhCCCCHHHHcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56999999999999986 455555666664 457999999999999999998764
No 90
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=7.4e-06 Score=87.74 Aligned_cols=60 Identities=28% Similarity=0.388 Sum_probs=46.1
Q ss_pred cccccc-cCCCcchhcccccceeeccceeeccccccCC-CceeEEECCCCCChhHHHHHHHHHHH
Q 014228 189 HYLPIH-REAPAFVEQATEQQILVTGIKVVDLLAPYQR-GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 189 ~~~pi~-~~~P~~ler~~~qe~L~TGikvID~l~pigr-Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.|.. +.||..+++..+|+++.. .+...+..++ .+.++|+||+||||||+|+.+++...
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~---~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVK---VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHH---HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 355654 459999999999999874 4444334444 47899999999999999999988653
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=9.1e-06 Score=88.69 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=46.0
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCC-CceeEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQR-GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigr-Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.||..++++.+|+++ ++.|..++..++ .+.++|+||+|+|||++|..+++..
T Consensus 8 ~KyRP~sf~dIiGQe~v---~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 8 ARYRPQTFAEVAGQETV---KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhCCCCHHHhcCCHHH---HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 35699999999999988 467777777776 5888999999999999999998775
No 92
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.3e-06 Score=88.34 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=46.0
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..++++.+|+++. +.|..++..++-.. .+|+||+|+||||+|..+++...
T Consensus 5 ~kyRP~~f~eivGq~~i~---~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVT---EPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHhCCCcHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999986 45667777777777 58999999999999999987653
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.8e-06 Score=83.57 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=43.4
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+-||..+++..||+++. +.+..++..++... ++|+||+|+||||+|+.+++..
T Consensus 9 kyrP~~~~~iiGq~~~~---~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIV---TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred HhCCCchhhccChHHHH---HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 55999999999999986 44556666666555 5899999999999999998765
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.5e-06 Score=88.20 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=43.7
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++..+|+++. +.+..++..++-.. .+|+||+|+||||+|..+++..
T Consensus 9 k~rP~~f~divGq~~v~---~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 9 KWRPKSFSELVGQEHVV---RALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HhCCCcHHHhcCcHHHH---HHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999986 45666666666665 5899999999999999998765
No 95
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=1e-05 Score=86.67 Aligned_cols=55 Identities=24% Similarity=0.217 Sum_probs=43.3
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..+++..+|+++. +.|..++..++-.. ++|+||+|+||||++..+++...
T Consensus 6 ~KyRP~~~~dvvGq~~v~---~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 6 QRARPITFDEVVGQEHVK---EVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HhhCCCCHHHhcChHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999974 44445555555544 49999999999999999988754
No 96
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.02 E-value=7.6e-06 Score=69.89 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|.||||+|||+++..+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999999999998875
No 97
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.00 E-value=8.7e-06 Score=82.20 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=40.9
Q ss_pred ccCCCcchhcccccceeeccceeeccccc-----cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAP-----YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~p-----igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.||..++++.+++...- .+..++. -.....++|+||||+|||+|+..+++..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~---~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKE---NLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred hhcCcCCHHHhcCcHHHHH---HHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4668999999999998753 3333332 2234689999999999999999888765
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.99 E-value=2.4e-05 Score=75.59 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=29.0
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..++.+.....+..+.|+||+|||||+|++.+++...
T Consensus 34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455555555667999999999999999998887654
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=97.97 E-value=2.9e-05 Score=74.70 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=40.6
Q ss_pred cccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 191 LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 191 ~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.|+...++..++.+.+++...--....+.+ .......+.|+||+|||||+|++.+++...+
T Consensus 5 l~~~~~~~~~fd~f~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 5 LPIHQIDDETLDNFYADNNLLLLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred cCCCCCCcccccccccCChHHHHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356666777788887766543212222222 2334456799999999999999999887544
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=1.4e-05 Score=90.20 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=46.4
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..++++++|+++. +.|-.++..++... ++|+|++||||||+++.+++...
T Consensus 7 ~KyRP~~f~eiiGqe~v~---~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVT---EPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHhCCCCHHHhcCcHHHH---HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 577999999999999985 55666677777777 68999999999999999988753
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=1.9e-05 Score=85.67 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=43.0
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+-||..+++..+|+++.. .+...+..++..+ .+|+||+|+|||+++..+++...
T Consensus 9 k~rP~~f~~viGq~~v~~---~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITK---TLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HhCCCcHHhccCcHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 459999999999999864 4455555565555 78899999999999999987653
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=2e-05 Score=85.84 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=44.6
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.||..++++.+|+++. +.+...+..++-.. .+|+||+|+||||++..+++...
T Consensus 8 ~k~RP~~f~~iiGq~~v~---~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVS---RTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHhCCCCHHHccCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 356999999999999986 55666666676655 58999999999999999987753
No 103
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.91 E-value=1.3e-05 Score=79.51 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=34.3
Q ss_pred chhcccccceeeccceeeccccc-----cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 200 FVEQATEQQILVTGIKVVDLLAP-----YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 200 ~ler~~~qe~L~TGikvID~l~p-----igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+++++||+++..- +..++. -.+.+.++|+||||||||+|+..+++..
T Consensus 2 ~~~~~iG~~~~~~~---l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 2 LLAEFIGQEKVKEQ---LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CHHHHcCHHHHHHH---HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45677788776533 333333 2345679999999999999999887754
No 104
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.90 E-value=0.00014 Score=69.75 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=54.8
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
+.+.||+.-+|.++. +-+|.-++|.|+||+|||+|+..++.+..+ ...-++|+...+.. .++++++.+.+
T Consensus 5 ~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~---~~~~~~~~~~g 76 (234)
T PRK06067 5 EIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTS---KSYLKQMESVK 76 (234)
T ss_pred eEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCH---HHHHHHHHHCC
Confidence 568899999999985 558999999999999999999999877654 35667787775543 45567666654
No 105
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=2.7e-05 Score=85.28 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=45.1
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+.||..++++.||+++.. .|..++..++-.. ++|+||+||||||+|..+++...
T Consensus 8 ~kyRP~~f~eivGQe~i~~---~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 8 RKYRPSKFADITAQEHITH---TIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHHCCCCHHHhcCcHHHHH---HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3679999999999999864 4566666666644 88999999999999999988753
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.88 E-value=2.5e-05 Score=88.56 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=41.1
Q ss_pred cCCCcchhcccccceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+|..++...++++. |+.++. -.+-.+++|+|+||||||+|+..+++...
T Consensus 180 ~~r~~~ld~~iGr~~e------i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 180 QAREGKIDPVLGRDDE------IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred HhcCCCCCcccCCHHH------HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 5688889989998885 444443 45678999999999999999999988764
No 107
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=3.4e-05 Score=83.76 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=42.9
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.||..+++..||+++.. .+-..+..++... .+|+||+|+|||+++..+++..
T Consensus 8 ~kyRP~~f~diiGqe~iv~---~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVE---TLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHhCCCCHHHccCcHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3569999999999999874 3444555555555 7899999999999999998765
No 108
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.80 E-value=0.00059 Score=66.97 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=44.4
Q ss_pred eeccceeecccc----------------ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCc
Q 014228 210 LVTGIKVVDLLA----------------PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (428)
Q Consensus 210 L~TGikvID~l~----------------pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~ 267 (428)
+.||+.-+|.++ =+-+|.-++|.|+||+|||+++.+++.+.+++ .+-++|...-+..
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPA 76 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCc
Confidence 458888899886 24589999999999999999999998886553 4556777664433
No 109
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.80 E-value=0.00039 Score=74.46 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=100.3
Q ss_pred ccceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcccc
Q 014228 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (428)
Q Consensus 206 ~qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~ 283 (428)
..+.+.||+.-+|.++. +-+|..++|.|+||+|||+|+..++.+.++ .++-++|...-+... ++.+.+..-|.
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~---~i~~~~~~~g~- 325 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRA---QLIRNARSWGI- 325 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHH---HHHHHHHHcCC-
Confidence 35678899999999986 778999999999999999999999887654 345567776655433 34455543331
Q ss_pred ccCcccCCCeEEEEEecC-CCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCC
Q 014228 284 KLGDKQADSKCALVYGQM-NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP 362 (428)
Q Consensus 284 ~~~~~~~~~~tvvv~~t~-d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~ 362 (428)
++.......+..++.... .....+.+. .+.+...+ .+.-++++|+++-+......-
T Consensus 326 ~~~~~~~~g~l~i~~~~~~~~~~~~~~~------~i~~~i~~--~~~~~vVIDslt~l~~~~~~~--------------- 382 (509)
T PRK09302 326 DLEKMEEKGLLKIICARPESYGLEDHLI------IIKREIEE--FKPSRVAIDPLSALARGGSLN--------------- 382 (509)
T ss_pred ChHHHhhcCCceeecCCcccCCHHHHHH------HHHHHHHH--cCCCEEEEcCHHHHHHhCCHH---------------
Confidence 110000111222222111 111112111 22333322 334489999998775432100
Q ss_pred ChhHhHHHHHHhhcCCCCccEeEEEEEEecCCCCCCchh-hhhccccCeEEEeehh
Q 014228 363 TLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP-ATTFAHLDATTVLSRQ 417 (428)
Q Consensus 363 ~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~dD~~dpi~-~~~~~~ld~~ivLsR~ 417 (428)
.+-..+..|...+. .--+|.+.+..++...-.++.. ....++.|+-|.|+..
T Consensus 383 ~~~~~l~~l~~~~k---~~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~ 435 (509)
T PRK09302 383 EFRQFVIRLTDYLK---SEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYV 435 (509)
T ss_pred HHHHHHHHHHHHHH---hCCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEe
Confidence 01112222222221 1236888887766533223332 2357888999999864
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=4e-05 Score=83.76 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=49.0
Q ss_pred Ccccccccc-CCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 187 TEHYLPIHR-EAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 187 ~~~~~pi~~-~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...|.++.+ .||..+++..+|+++. +.|-.++..++- +.++|+||+|+||||+|+.+++...
T Consensus 8 ~~~y~~la~KyRP~~f~dliGq~~~v---~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 8 ATPYRVLARKYRPQTFDDLIGQEAMV---RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CccchhHHhhhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 344566554 5999999999999886 556666767764 4699999999999999999988653
No 111
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.76 E-value=3.7e-05 Score=76.84 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=44.0
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+++.+|..++++.+++... .-+..++..++...++|+||+|+||||++..+++...
T Consensus 6 ~~ky~P~~~~~~~g~~~~~---~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV---ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH---HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888899999988864 4455566656555799999999999999999887653
No 112
>PRK08181 transposase; Validated
Probab=97.75 E-value=5.6e-05 Score=74.89 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.++++++|+||+|||||+|+..+++...+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 47889999999999999999999876543
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=7.8e-05 Score=78.96 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=43.0
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++..||+.+.. .+...+..++- +.++|+||+|+|||++|..+++..
T Consensus 10 kyRP~~~~diiGq~~~v~---~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVA---VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HhCCCCHHHhcCcHHHHH---HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 569999999999998864 45555555654 568999999999999999998865
No 114
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.71 E-value=0.00047 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+..+.|+|++|+|||+|+..+++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999987753
No 115
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.70 E-value=0.00014 Score=69.29 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=68.3
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhc-----CcEEEEEeecCCcchHHHHHHHHHHccc
Q 014228 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGV 282 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-----~~~~V~~giGeR~~Ev~dl~~el~e~~~ 282 (428)
+.||++.+|.++. +.+|.-..|.|+||+|||+|+..++.+..... ..-++|....+ .....++.+.+...+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~-~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG-TFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC-CcCHHHHHHHHHHhcc
Confidence 3589999999976 67899999999999999999999987643322 13456655433 2233343333222221
Q ss_pred cccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH
Q 014228 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (428)
Q Consensus 283 ~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~ 342 (428)
. .+..+++..++.. .+ .......+ ..+-+.+.. .++--+|++|+++.+-+
T Consensus 80 -~--~~~~~~~i~~~~~-~~---~~~l~~~l--~~l~~~l~~-~~~~~liVIDSis~~~~ 129 (235)
T cd01123 80 -D--PEEVLDNIYVARA-YN---SDHQLQLL--EELEAILIE-SSRIKLVIVDSVTALFR 129 (235)
T ss_pred -C--hHhHhcCEEEEec-CC---HHHHHHHH--HHHHHHHhh-cCCeeEEEEeCcHHHHH
Confidence 1 1112334333322 11 11111111 112233333 33778999999987643
No 116
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.68 E-value=0.00015 Score=72.36 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=43.2
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEE-ECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL-FGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~I-fG~~G~GKTtLa~~ii~n~ 250 (428)
+++-||..+++..+|+.... .+..++..++..++++ +|++|+|||+++..++++.
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~---~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE---TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH---HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 56789999999999998753 4445555566666777 7999999999999887764
No 117
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.68 E-value=0.00065 Score=72.79 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=57.1
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
+.+.|||.-+|.++. +-+|.-++|.|+||+|||+|+++++.+.++++++-++|...-|..+++ ++.+...|
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i---~~~~~~~g 83 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDI---IRNVASFG 83 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHH---HHHHHHcC
Confidence 356799999999974 779999999999999999999999988776656778888887765554 55555544
No 118
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=5.9e-05 Score=84.29 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=42.8
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+.+|..++...++++.+. +++..| ...+..+++|+||||||||+|+..+++....
T Consensus 175 ~~r~~~l~~~igr~~ei~--~~~~~L-~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELE--RTIQVL-CRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHhcCCCCcccCcHHHHH--HHHHHH-hcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 457888888889888765 445433 3456779999999999999999999887643
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=9.2e-05 Score=80.64 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++..||+++. +.+-..+..++. +.++|+||+|+||||+|..+++..
T Consensus 9 KyRP~~F~dIIGQe~iv---~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 9 KYRPHNFKQIIGQELIK---KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56999999999999886 344445544554 458899999999999999998875
No 120
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.66 E-value=0.0013 Score=62.52 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=45.4
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcc
Q 014228 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~ 268 (428)
+.||+.-+|.++. +-+|..++|.|+||+|||+|+..++.+..+ ...-++|....+..+
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~~ 61 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESRE 61 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCHH
Confidence 4689999999875 568999999999999999999998876544 345567776655443
No 121
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.65 E-value=0.00033 Score=66.23 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=42.5
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhc-----CcEEEEEee
Q 014228 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGV 263 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-----~~~~V~~gi 263 (428)
+.||+..+|.++- +.+|+-..|+|+||+|||+|+..++.+..... ..-++|...
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 4589999999874 77899999999999999999999988765432 134466554
No 122
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.65 E-value=0.0028 Score=61.21 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=45.5
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
+.+++.-+|.++. +-+|..++|.|++|+|||||+..++.+..+. ..-++|....+... ++++.+.+.|
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~---~~~~~~~~~g 75 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTT---EFIKQMMSLG 75 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHH---HHHHHHHHhC
Confidence 4455666666664 5678999999999999999987777765432 34457776655443 4455554433
No 123
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00011 Score=80.86 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=42.7
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCC-CceeEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQR-GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigr-Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..+++..+|+.+.. .|-.++..++ .+.++|+||+|+|||++|..+++...
T Consensus 8 ~kyRP~~f~~liGq~~i~~---~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIAT---TLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HHhCCCcHhhccChHHHHH---HHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 3568999999999998753 3444444454 47789999999999999999988753
No 124
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.63 E-value=0.002 Score=61.15 Aligned_cols=56 Identities=30% Similarity=0.504 Sum_probs=45.3
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
++.+.||+.-+|.++. +-+|.-..|+|+||+|||+|+..++.+.++. ..-++|.-.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~ 59 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDT 59 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 3568899999999984 5578889999999999999999999887654 344566654
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=9.3e-05 Score=79.77 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=43.3
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.||..+++..+|+++. +.+-.++..++-... +|+|++|+|||+++..+++..
T Consensus 6 ~KyRP~~fdeiiGqe~v~---~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 6 LKYRPKHFDELIGQESVS---KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHCCCCHHHccCcHHHH---HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 367999999999999985 444455556666654 899999999999999998775
No 126
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=7.6e-05 Score=77.75 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+.++|+||+|+|||++|..+++..
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 46779999999999999999998754
No 127
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=8e-05 Score=81.82 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=44.3
Q ss_pred cccCCCcchhcccccceeecccee-e-ccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKV-V-DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikv-I-D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..++++.++++.+..++- + +..++...++-++|+||+|+||||++..+++..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 668899999999999987665432 1 233344556679999999999999998887643
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.00011 Score=83.42 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=39.5
Q ss_pred cCCCcchhcccccceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+|..++...++++. |+.++. -.+..+++|+|+||||||+|+..++....
T Consensus 171 ~~r~~~l~~vigr~~e------i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 171 RAEQGKLDPVIGRDEE------IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHhcCCCCcCCCCHHH------HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 4677778888888874 444443 45667999999999999999998887754
No 129
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00014 Score=79.47 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=42.6
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCC-CceeEEECCCCCChhHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQR-GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigr-Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++.||..++++.+|+++.. .|...+..++ ++.++|+||+|+|||+++..+++..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~---~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQ---TLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhCCCCHHHhcCCHHHHH---HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999863 4444444444 4556999999999999999998765
No 130
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.55 E-value=0.00033 Score=64.80 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=24.9
Q ss_pred cccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 221 APYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 221 ~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+-.++- +.++|+|++|+|||+++..+++...
T Consensus 8 i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 8 LEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 334444 6799999999999999999988753
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00017 Score=77.01 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=42.7
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++..+|+++. +.+...+..++-.. .+|+||+|+||||++..+++..
T Consensus 9 kyRP~~f~diiGq~~i~---~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVV---RILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred hhCCCcHHHccChHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999987 45556666666555 5789999999999999888764
No 132
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55 E-value=0.0016 Score=59.44 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=31.3
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev 270 (428)
++|.|+||+|||+|+..++.+.+++ +.-++|...-|..+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHH
Confidence 5799999999999999999887643 4445677776655544
No 133
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.54 E-value=0.0003 Score=71.40 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=70.7
Q ss_pred ceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccc
Q 014228 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (428)
Q Consensus 208 e~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~ 284 (428)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+..++.+..+. ...++|...-+.... ..+...|+ +
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~-----~~a~~lGv-d 106 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDP-----VYARKLGV-D 106 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHH-----HHHHHcCC-C
Confidence 468899999999987 6688899999999999999999988876543 456677654321111 11222232 1
Q ss_pred cCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH
Q 014228 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 285 ~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa 341 (428)
.++ ++..+.+. .++ ++.+.+.+.. .+.--++|+|+++-+.
T Consensus 107 ------~~~--l~v~~p~~--~eq------~l~~~~~li~-~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 107 ------IDN--LLVSQPDT--GEQ------ALEIAETLVR-SGAVDIIVVDSVAALV 146 (321)
T ss_pred ------HHH--eEEecCCC--HHH------HHHHHHHHhh-ccCCcEEEEcchhhhc
Confidence 122 22333332 233 2445555544 5777899999998665
No 134
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.00015 Score=80.43 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=43.4
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.||..+++..||+++. +.+...+..++.... +|+||+|+|||++|..+++..
T Consensus 11 KyRP~~f~dIiGQe~~v---~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIV---QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45999999999999975 556666666766654 899999999999999998764
No 135
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.50 E-value=0.0003 Score=69.69 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=41.7
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++-+|..++++.+++... ..+..++..+....++|+|++|+|||+++..+++..
T Consensus 8 ~~kyrP~~~~~~~g~~~~~---~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIV---ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred chhhCCCcHHHhcCcHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566788899888887643 344455555555679999999999999999888765
No 136
>PRK06526 transposase; Provisional
Probab=97.50 E-value=0.00025 Score=69.63 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.++++++|+||+|||||+|+..+++...
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 3678999999999999999999987654
No 137
>PRK09354 recA recombinase A; Provisional
Probab=97.48 E-value=0.00045 Score=70.90 Aligned_cols=111 Identities=23% Similarity=0.370 Sum_probs=73.5
Q ss_pred cceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcccc
Q 014228 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (428)
Q Consensus 207 qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~ 283 (428)
.+.+.||+..||.++. +-+|.-+.|+|++|+|||+|+..++.+..+ ....++|...-+... . +.+...|+
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~-~----~~a~~lGv- 110 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALD-P----VYAKKLGV- 110 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchH-H----HHHHHcCC-
Confidence 4578899999999988 557788889999999999999998887654 456778876633222 1 22222332
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH
Q 014228 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 284 ~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa 341 (428)
+ .++ +++.+.+. .++ ++.+.+.+.. .+.--++|+|+++-+.
T Consensus 111 d------ld~--lli~qp~~--~Eq------~l~i~~~li~-s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 111 D------IDN--LLVSQPDT--GEQ------ALEIADTLVR-SGAVDLIVVDSVAALV 151 (349)
T ss_pred C------HHH--eEEecCCC--HHH------HHHHHHHHhh-cCCCCEEEEeChhhhc
Confidence 1 122 23333332 333 2445655554 5778899999998665
No 138
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.48 E-value=0.0016 Score=63.49 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=50.3
Q ss_pred cceeeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHH
Q 014228 207 QQILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (428)
Q Consensus 207 qe~L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~d 272 (428)
.+-+.||+..+|.++ -+.+|.-++|.|++|+|||+++.+++.+.++.+..-.+|...-+...+..+
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~ 76 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTAR 76 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHH
Confidence 346779999999986 367888999999999999999999998876554444566666565545433
No 139
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00029 Score=69.15 Aligned_cols=47 Identities=36% Similarity=0.588 Sum_probs=35.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHc
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~ 280 (428)
++.++.|+|+||+|||+|+..|++...+ .+++ .|.-+ .|++.++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~~-------~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFITA-------PDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEEH-------HHHHHHHHHH
Confidence 8999999999999999999999998763 2444 34433 4566666554
No 140
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.47 E-value=0.004 Score=59.16 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=47.2
Q ss_pred cceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 213 GIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 213 GikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
|++-+|.++. +-+|.-++|.|+||+|||+++..++.+..++ ..-++|...-+...+ +.+.+...+
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~---l~~~~~~~~ 67 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREER---ILGYAKSKG 67 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHH---HHHHHHHcC
Confidence 4566777764 3479999999999999999999998876543 566778888665444 455554443
No 141
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.46 E-value=0.002 Score=68.82 Aligned_cols=178 Identities=13% Similarity=0.172 Sum_probs=101.0
Q ss_pred ccceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcccc
Q 014228 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (428)
Q Consensus 206 ~qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~ 283 (428)
..+.+.||+.-+|.++- +.+|.-++|.|+||+|||+|+.+++.+.++ +.+-++|...-|...+ +++.+..-|+
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~---i~~~~~~lg~- 315 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQ---LLRNAYSWGI- 315 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHH---HHHHHHHcCC-
Confidence 45578899999999984 678999999999999999999999988765 4566788887775444 4566655442
Q ss_pred ccCcccCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCC
Q 014228 284 KLGDKQADSKCALVYG-QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP 362 (428)
Q Consensus 284 ~~~~~~~~~~tvvv~~-t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~ 362 (428)
+..+.....+-.++.. +....+...+ -.+-+...+ -+.-++++|+|+-|..+..+- .
T Consensus 316 ~~~~~~~~g~l~~~~~~p~~~~~~~~~------~~i~~~i~~--~~~~~vvIDsi~~~~~~~~~~----------~---- 373 (484)
T TIGR02655 316 DFEEMEQQGLLKIICAYPESAGLEDHL------QIIKSEIAD--FKPARIAIDSLSALARGVSNN----------A---- 373 (484)
T ss_pred ChHHHhhCCcEEEEEcccccCChHHHH------HHHHHHHHH--cCCCEEEEcCHHHHHHhcCHH----------H----
Confidence 1101001112233221 1111222211 111222222 233478999999775443110 0
Q ss_pred ChhHhHHHHHHhhcCCCCccEeEEEEEEecC--CCCCCchh-hhhccccCeEEEeeh
Q 014228 363 TLATDLGGLQERITTTKKGSITSVQAIYVPA--DDLTDPAP-ATTFAHLDATTVLSR 416 (428)
Q Consensus 363 ~l~~~l~~l~ERa~~~~~GSIT~i~~v~~~~--dD~~dpi~-~~~~~~ld~~ivLsR 416 (428)
.-..+.+|.+-+ +.-.||.+.+..++. ++ .+++ ...-++.|+-|.|..
T Consensus 374 -~r~~~~~l~~~l---k~~~it~~~t~~~~~~~~~--~~~~~~~~s~l~D~ii~l~~ 424 (484)
T TIGR02655 374 -FRQFVIGVTGYA---KQEEITGFFTNTSDQFMGS--HSITDSHISTITDTILMLQY 424 (484)
T ss_pred -HHHHHHHHHHHH---hhCCCeEEEeecccccccC--CccCCCCeeEeeeEEEEEEE
Confidence 011122222221 234478888876654 22 2233 245778899998853
No 142
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.45 E-value=0.00015 Score=74.80 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...-++||||||||||.++..+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 34457889999999999999888765
No 143
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.44 E-value=0.00045 Score=72.91 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=29.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEee
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGV 263 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~gi 263 (428)
...+.|+|++|+|||+|++.+++...+.+.+.. +|...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 356899999999999999999988766555555 45544
No 144
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.44 E-value=0.00024 Score=69.21 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH-hhcCcEEEEEeecCCcchHHHHHHHHHHc
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGFSVFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~-~~~~~~~V~~giGeR~~Ev~dl~~el~e~ 280 (428)
...+.++|+|++|+|||+||..++++.. +.+.+.++|+.++..... .++++.+.+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~-~~~~~~i~~~ 73 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL-EQLLEQILRQ 73 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC-HHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc-cccccccccc
Confidence 5678889999999999999999987722 334577888888766555 5666666554
No 145
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.43 E-value=0.00034 Score=59.96 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhc---CcEE-EEEeecCCcchHHHHHHHHHHc
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAH---GGFS-VFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~---~~~~-V~~giGeR~~Ev~dl~~el~e~ 280 (428)
+++.+.|+|++|+|||+++..++++..... .... ++.-+.... ...++++++.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 61 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEA 61 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHH
Confidence 456788999999999999999988754310 0222 455555444 566777777665
No 146
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.43 E-value=0.00049 Score=69.81 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=56.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhhcCc----EE-EEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEE
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG----FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~----~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~ 298 (428)
.+++.+.|+||||+|||+++..+.+.......+ +. +|..+-+ .....+++.++.+.- .+.+.+ .
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~~l-~~~~~~---------~ 106 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-LDTLYQVLVELANQL-RGSGEE---------V 106 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-CCCHHHHHHHHHHHH-hhcCCC---------C
Confidence 556889999999999999999888765432221 33 5665533 334445666665541 000000 0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH
Q 014228 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (428)
Q Consensus 299 ~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~ 342 (428)
.....+....+. .+-+++.. .++.++|++||+..+..
T Consensus 107 ~~~~~~~~~~~~------~l~~~l~~-~~~~~vlvIDE~d~L~~ 143 (365)
T TIGR02928 107 PTTGLSTSEVFR------RLYKELNE-RGDSLIIVLDEIDYLVG 143 (365)
T ss_pred CCCCCCHHHHHH------HHHHHHHh-cCCeEEEEECchhhhcc
Confidence 000111111111 11233333 57889999999999963
No 147
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.43 E-value=0.0004 Score=67.91 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=24.9
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+......++|+||||||||++|..+++..
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 44667889999999999999999888754
No 148
>PF13173 AAA_14: AAA domain
Probab=97.43 E-value=0.00045 Score=60.14 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=50.3
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~ 305 (428)
++-++|.|++|||||||+.+++.... ...-.+|....+ +.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~--------------------------------------~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDD--------------------------------------PR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCC--------------------------------------HH
Confidence 45678999999999999999887642 111234444432 11
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCcEEEEEeCchhHHHHHHHhHHhcCC
Q 014228 306 GARARVGLTGLTVAEHFRDA-EGQDVLLFIDNIFRFTQANSEVSALLGR 353 (428)
Q Consensus 306 ~~r~~~~~~a~tiAEyfrd~-~Gk~VLL~iDditRfa~A~reis~llgr 353 (428)
..+..... +.++++.. ..+..+||+||+++.......+-.+..+
T Consensus 42 ~~~~~~~~----~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~ 86 (128)
T PF13173_consen 42 DRRLADPD----LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDN 86 (128)
T ss_pred HHHHhhhh----hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHh
Confidence 11100000 24455441 2367899999999987766666555554
No 149
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.42 E-value=0.00038 Score=70.75 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=71.9
Q ss_pred cceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcccc
Q 014228 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (428)
Q Consensus 207 qe~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~ 283 (428)
.+.+.||+..||.++. +-+|.-+.|+||+|+|||+|+..++.+..+ ....++|...-+ .-+. ..+...|+
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~-~~~~----~~a~~lGv- 105 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEH-ALDP----VYAKKLGV- 105 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccc-cHHH----HHHHHcCC-
Confidence 3578899999999988 567888899999999999999998887654 345677765522 2221 12222231
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH
Q 014228 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 284 ~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa 341 (428)
+ .++ +++.+.+. .++ ++.+++.+.. .+.-.++|+|+++-+.
T Consensus 106 d------~~~--l~v~~p~~--~eq------~l~i~~~li~-s~~~~lIVIDSvaal~ 146 (325)
T cd00983 106 D------LDN--LLISQPDT--GEQ------ALEIADSLVR-SGAVDLIVVDSVAALV 146 (325)
T ss_pred C------HHH--heecCCCC--HHH------HHHHHHHHHh-ccCCCEEEEcchHhhc
Confidence 1 112 23333332 222 3445566554 5778899999998665
No 150
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.41 E-value=0.00036 Score=70.41 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=39.7
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+-+|..+++..+|+.... .+...+..++- +..+|+||+|+|||+++..+++..
T Consensus 7 ~~rp~~~~~iig~~~~~~---~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQ---TLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred HhCCCcHhhccCcHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458888999999887653 33344444443 457899999999999999888764
No 151
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00029 Score=77.38 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=43.6
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+.||..+++..||+++.. .|-..+..++-.. .+|+||+|+|||+++..+++..
T Consensus 8 ~~kyRP~~f~~viGq~~~~~---~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTT---TLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHH---HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999863 3445555566555 7899999999999999888765
No 152
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.40 E-value=0.00047 Score=66.08 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=28.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEE
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFA 261 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~ 261 (428)
...+.|||++|+|||+|++.+.+...+.+.+.. +|.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 456899999999999999999988766666655 444
No 153
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.38 E-value=0.00081 Score=69.02 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=56.7
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecC
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~ 301 (428)
-.+.+.+.|+|+||+|||+++..+.+........+ .+|+.+.+. ....+++.++.+.- ...... ..
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~-~~~~~~~~~i~~~l----~~~~~~--------~~ 118 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID-RTRYAIFSEIARQL----FGHPPP--------SS 118 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC-CCHHHHHHHHHHHh----cCCCCC--------CC
Confidence 35668899999999999999999988764433233 366666443 33445566655431 000000 00
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH
Q 014228 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 302 d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa 341 (428)
..+. ... --.+.+++.. .++.++|++||+..+.
T Consensus 119 ~~~~-~~~-----~~~~~~~l~~-~~~~~viviDE~d~l~ 151 (394)
T PRK00411 119 GLSF-DEL-----FDKIAEYLDE-RDRVLIVALDDINYLF 151 (394)
T ss_pred CCCH-HHH-----HHHHHHHHHh-cCCEEEEEECCHhHhh
Confidence 0011 111 0112344443 5788999999999876
No 154
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.38 E-value=0.00032 Score=67.73 Aligned_cols=68 Identities=24% Similarity=0.380 Sum_probs=52.7
Q ss_pred eeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 210 L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
+.||+.-+|.++. +-+|..++|.|+||+|||+|+.+++.+..+ .++-++|+...|...+ +++.+.+-+
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~---i~~~~~~~g 72 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQ---VRRNMAQFG 72 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHH---HHHHHHHhC
Confidence 6799999999875 568999999999999999999998877653 4567788888775544 355554433
No 155
>PRK04328 hypothetical protein; Provisional
Probab=97.36 E-value=0.00035 Score=68.12 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=53.9
Q ss_pred eeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 209 ~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
.+.||+.-+|.++. +-+|..++|.|+||+|||+|+..++.+..+ .++-++|+...|...++ ++.+.+-|
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i---~~~~~~~g 74 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQV---RRNMRQFG 74 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHH---HHHHHHcC
Confidence 47799999999976 348999999999999999999998877543 35677898888866654 44444443
No 156
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.35 E-value=0.0013 Score=65.84 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=71.4
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhh-----cCcEEEEEeecCCcchHHHHHHHHHH
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~-----~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
...+.|++..+|.++. +.+|.-..|+|+||+|||+|+..++.+.... ...-++|....+. ....++.+.+..
T Consensus 74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~-f~~~rl~~~~~~ 152 (310)
T TIGR02236 74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT-FRPERIMQMAEA 152 (310)
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC-CCHHHHHHHHHH
Confidence 3457789999999876 5578888999999999999999998875421 1235688776552 222333333322
Q ss_pred ccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEeCchhHHH
Q 014228 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG-QDVLLFIDNIFRFTQ 342 (428)
Q Consensus 280 ~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G-k~VLL~iDditRfa~ 342 (428)
.+.- .....++..++.. .+..+ +.. .--.+.+++.+ .+ +--+||+|+|+-+-+
T Consensus 153 ~gl~---~~~~~~~i~i~~~-~~~~~--~~~---lld~l~~~i~~-~~~~~~lVVIDSisa~~r 206 (310)
T TIGR02236 153 RGLD---PDEVLKNIYVARA-YNSNH--QML---LVEKAEDLIKE-LNNPVKLLIVDSLTSHFR 206 (310)
T ss_pred cCCC---HHHHhhceEEEec-CCHHH--HHH---HHHHHHHHHHh-cCCCceEEEEecchHhhh
Confidence 2211 1112234333333 22111 111 11234555554 23 245999999986644
No 157
>PRK12377 putative replication protein; Provisional
Probab=97.35 E-value=0.00038 Score=68.22 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+.++|+|++|||||+|+..|++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 158
>PRK08727 hypothetical protein; Validated
Probab=97.33 E-value=0.00071 Score=65.30 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=21.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+.|+|++|+|||+|++.+++...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999998887654
No 159
>PRK09183 transposase/IS protein; Provisional
Probab=97.31 E-value=0.00095 Score=65.64 Aligned_cols=28 Identities=39% Similarity=0.525 Sum_probs=25.1
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+|+.++|+||+|+|||+|+..+++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999887654
No 160
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.30 E-value=0.0024 Score=59.83 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=33.0
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe 265 (428)
+.+|+-+.|+|+||+|||+++.+++.+..+. ..-++|....+
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 3578999999999999999999999887543 44567766643
No 161
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.30 E-value=0.002 Score=66.06 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=70.6
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhh--c---CcEEEEEeecCCcchHHHHHHHHHH
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA--H---GGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~--~---~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
...+.||++.||.++- +-.|.-..|+|+||+|||+|++.++.+.... . ..-.+|.-.-+ +....++.+....
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~-tF~peRl~~ia~~ 183 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG-TFRPDRIVPIAER 183 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC-CCCHHHHHHHHHH
Confidence 4568899999999976 5578888899999999999999998765421 1 13457776643 2233333333322
Q ss_pred ccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH
Q 014228 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (428)
Q Consensus 280 ~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~ 342 (428)
-++ + .++.+++ + .+..... ...+.... ..+.+.+.+ .+--|||+|+|+-+-+
T Consensus 184 ~g~-d--~~~~l~~-I-~~~~~~~-~e~~~~~l---~~l~~~i~~--~~~~LvVIDSital~r 235 (344)
T PLN03187 184 FGM-D--ADAVLDN-I-IYARAYT-YEHQYNLL---LGLAAKMAE--EPFRLLIVDSVIALFR 235 (344)
T ss_pred cCC-C--hhhhcCe-E-EEecCCC-HHHHHHHH---HHHHHHHHh--cCCCEEEEeCcHHhhh
Confidence 221 1 1122334 2 2222222 22222211 122333432 4456899999986644
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.00037 Score=79.32 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=39.6
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.+|..++...++++.+ +-+...+.-.+..+.+|+||||||||+|+..++....
T Consensus 166 ~~~~~~~~~~igr~~ei---~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEI---RRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred HhhCCCCCcCCCcHHHH---HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 45777788888888742 2222222345678999999999999999998887754
No 163
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00061 Score=69.71 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.7
Q ss_pred ccCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 194 ~~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.||..+++..+|+... +.+...+..++- +.++|+||+|+|||+++..+++...
T Consensus 9 ~k~rP~~~~~iig~~~~~---~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHIT---NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHCCCcHHhcCCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999998875 445555544544 4788999999999999999987653
No 164
>PRK06921 hypothetical protein; Provisional
Probab=97.29 E-value=0.00062 Score=67.27 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=25.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..+..+.|+|++|+|||+|+..|++...+
T Consensus 115 ~~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 115 SRKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred cCCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 35789999999999999999999887654
No 165
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.25 E-value=0.00043 Score=73.90 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=56.0
Q ss_pred eeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHcc
Q 014228 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (428)
Q Consensus 209 ~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~ 281 (428)
.+.|||.-+|.++. +-+|...+|.|+||+|||+|+.+++.+.++++.+-++|+...|..+++ ++.+.+-|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l---~~~~~~~G 73 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDI---IKNARSFG 73 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHH---HHHHHHcC
Confidence 36789999999986 669999999999999999999999877655556778888887765554 56665554
No 166
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.00098 Score=70.65 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=27.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEe
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAG 262 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~g 262 (428)
..+.|+|++|+|||+|++.+++...+.+.+.. +|..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~ 178 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS 178 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 45889999999999999999887654455555 4443
No 167
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.20 E-value=0.00071 Score=63.82 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.1
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+..++....+..+.|+|++|||||+|++.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455555556778899999999999999999888764
No 168
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.19 E-value=0.00088 Score=62.28 Aligned_cols=48 Identities=31% Similarity=0.613 Sum_probs=31.8
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHH
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e 279 (428)
+.+++.+.|+|++|+|||+||..|++.... + ++. .|.- ..+++.++.+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~-g~~v~f~~-------~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-K-GYSVLFIT-------ASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-T-T--EEEEE-------HHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C-CcceeEee-------cCceeccccc
Confidence 357889999999999999999999987654 2 343 3442 3556666643
No 169
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.17 E-value=0.00087 Score=70.83 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+..++|+||||||||+|++.+++..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44569999999999999999888765
No 170
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.14 E-value=0.0017 Score=67.54 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=27.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEE
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFA 261 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~ 261 (428)
+..+.|+|++|+|||+|++.+++...+.+.+.. +|.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 456899999999999999999887655444444 454
No 171
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.00025 Score=69.89 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=46.8
Q ss_pred chhcccccceeeccceeecccccc--C----CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEE--EEeecCCcchHH
Q 014228 200 FVEQATEQQILVTGIKVVDLLAPY--Q----RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV--FAGVGERTREGN 271 (428)
Q Consensus 200 ~ler~~~qe~L~TGikvID~l~pi--g----rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V--~~giGeR~~Ev~ 271 (428)
.+++.++||----.-++|-..+.. . --.+++|+||||||||.+|..+++.... +-+.| .-.|||.--+..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~l~vkat~liGehVGdga 196 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PLLLVKATELIGEHVGDGA 196 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ceEEechHHHHHHHhhhHH
Confidence 466666666433222333222211 1 1268999999999999999988875421 11222 236777666666
Q ss_pred HHHHHHHHc
Q 014228 272 DLYREMIES 280 (428)
Q Consensus 272 dl~~el~e~ 280 (428)
+.++++.+.
T Consensus 197 r~Ihely~r 205 (368)
T COG1223 197 RRIHELYER 205 (368)
T ss_pred HHHHHHHHH
Confidence 666666554
No 172
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.14 E-value=0.00075 Score=64.21 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+..+.|+|++|||||+|+..+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999887754
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.12 E-value=0.00082 Score=72.22 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...++|+||||||||++++.+++...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 34599999999999999999988754
No 174
>PRK04195 replication factor C large subunit; Provisional
Probab=97.10 E-value=0.00062 Score=72.54 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=40.0
Q ss_pred cccCCCcchhcccccceeeccceeeccccc---cCC-CceeEEECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAP---YQR-GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~p---igr-Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++-+|..+++..+++....- +..++. .|+ ...++|+||||+||||++..+++..
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~---l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQ---LREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHH---HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999998876532 222221 122 5679999999999999999888764
No 175
>PF05729 NACHT: NACHT domain
Probab=97.10 E-value=0.0021 Score=56.65 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=30.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhhcC-----cEEEEEeecCCcch
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVAKAHG-----GFSVFAGVGERTRE 269 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~~~-----~~~V~~giGeR~~E 269 (428)
-+.|.|++|+||||++..++..+...+. .+.+|...++....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 3679999999999999999988776542 24456666554443
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0013 Score=65.93 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=37.8
Q ss_pred hhcccccceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHHH-----hhcCcEEEE
Q 014228 201 VEQATEQQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNVA-----KAHGGFSVF 260 (428)
Q Consensus 201 ler~~~qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~~-----~~~~~~~V~ 260 (428)
+++..+|+.+. +.+-..+..++.... +|+||+|+|||++|..+++..- ..|+|+..+
T Consensus 3 ~~~i~g~~~~~---~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~ 65 (313)
T PRK05564 3 FHTIIGHENIK---NRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF 65 (313)
T ss_pred hhhccCcHHHH---HHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe
Confidence 44556666553 333444455666555 7899999999999999988642 246677544
No 177
>PRK05973 replicative DNA helicase; Provisional
Probab=97.09 E-value=0.0042 Score=60.59 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=42.6
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccc
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGV 282 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~ 282 (428)
+.+|.-++|.|+||+|||+++.+++.+.+++ +.-.+|...-|..+++ ++.+...++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i---~~R~~s~g~ 116 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDV---RDRLRALGA 116 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHH---HHHHHHcCC
Confidence 5789999999999999999999999887654 4455777776654444 666666653
No 178
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.09 E-value=0.00071 Score=67.92 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=45.5
Q ss_pred cccccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 191 LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 191 ~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++.+|..+++..+|++.++ ++-.-+--.-+..++|+||||||||+.+...++..
T Consensus 25 swteKYrPkt~de~~gQe~vV~---~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQ---VLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHH---HHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 3567889999999999999874 33333333678899999999999999998887764
No 179
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.09 E-value=0.0036 Score=63.10 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=70.7
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhc-----CcEEEEEeecCCcchHHHHHHHHHH
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~-----~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
...+.|++.-+|.++. +.+|.-..|+|+||+|||+++..++.+..... ..-++|....+ .....++.+.+..
T Consensus 81 ~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~-~f~~~rl~~~~~~ 159 (317)
T PRK04301 81 VGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG-TFRPERIEQMAEA 159 (317)
T ss_pred CCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC-CcCHHHHHHHHHH
Confidence 3467889999999875 66789999999999999999999987754321 13457777644 3233443333322
Q ss_pred ccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014228 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 280 ~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
.+. + .+..+++..++- . . +...+... --.+.+.+.+ ..+--+|++|+|+-+-++
T Consensus 160 ~g~-~--~~~~l~~i~~~~-~-~-~~~~~~~~---~~~l~~~i~~-~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 160 LGL-D--PDEVLDNIHVAR-A-Y-NSDHQMLL---AEKAEELIKE-GENIKLVIVDSLTAHFRA 213 (317)
T ss_pred cCC-C--hHhhhccEEEEe-C-C-CHHHHHHH---HHHHHHHHhc-cCceeEEEEECchHHhhh
Confidence 221 0 111233433322 2 1 11222111 1122233322 134459999999876443
No 180
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.09 E-value=0.0038 Score=64.74 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=43.8
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEe
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~g 262 (428)
.+.+.||+.-+|.++- +.+|.-++|.|+||+|||||+.+++.+.++.. .-.+|..
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs 117 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVS 117 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEE
Confidence 3468899999999984 77899999999999999999999998876532 2334543
No 181
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0017 Score=71.14 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=27.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEee
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGV 263 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~gi 263 (428)
.+.|+|++|+|||+|++.|++...+.+.+.. +|.-.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4899999999999999999988655444555 45443
No 182
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.06 E-value=0.0067 Score=61.46 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=69.9
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhh-----cCcEEEEEeecCCcchHHHHHHHHHH
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~-----~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
...+.||++.||.++- +.+|.-..|+|+||+|||+|+++++.+.... ...-++|.-.-+ .....++.+.+..
T Consensus 75 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~-~f~~eRi~~~a~~ 153 (313)
T TIGR02238 75 VLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG-TFRPDRIRAIAER 153 (313)
T ss_pred CceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC-CCCHHHHHHHHHH
Confidence 3568899999999975 5678889999999999999999988664321 123457776533 3233333332322
Q ss_pred ccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH
Q 014228 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (428)
Q Consensus 280 ~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~ 342 (428)
.++- .+..+++ +.++ .... ....... -..+.+.+. .++--+||+|+|+-+-+
T Consensus 154 ~g~d---~~~~l~~-i~~~-~~~~-~e~~~~~---l~~l~~~i~--~~~~~LvVIDSisal~r 205 (313)
T TIGR02238 154 FGVD---PDAVLDN-ILYA-RAYT-SEHQMEL---LDYLAAKFS--EEPFRLLIVDSIMALFR 205 (313)
T ss_pred cCCC---hHHhcCc-EEEe-cCCC-HHHHHHH---HHHHHHHhh--ccCCCEEEEEcchHhhh
Confidence 2211 1112333 2222 2111 1222211 122333443 24556899999985543
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.05 E-value=0.0024 Score=67.45 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=28.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEe
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAG 262 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~g 262 (428)
...+.|+|++|+|||+|++.+++...+.+++.. +|..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 356999999999999999999988766555544 4543
No 184
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.0015 Score=59.89 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+|+.|+|++|+|||||+..+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 185
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00033 Score=71.53 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-.=++++||||||||-||...++..
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3448999999999999999888765
No 186
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.002 Score=66.24 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCCcchhcccccceeeccceeeccccccCCCce-eEEECCCCCChhHHHHHHHHHHH
Q 014228 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 196 ~~P~~ler~~~qe~L~TGikvID~l~pigrGqr-i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..|...++..+|+... ..+-..+..+++.. ++|.|++|+||||++..+++..-
T Consensus 17 ~~P~~~~~l~Gh~~a~---~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 17 PSPSENTRLFGHEEAE---AFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCCCchhhccCcHHHH---HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 5777788888888765 44555556677654 89999999999999999998764
No 187
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0009 Score=73.46 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=70.9
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEE
Q 014228 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tv 295 (428)
++..|-...+|.=++|.||||+|||+++..|++...+.|..++|-+...+ -++. ...||.
T Consensus 428 AV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv---------AeIk-----------GHRRTY 487 (906)
T KOG2004|consen 428 AVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV---------AEIK-----------GHRRTY 487 (906)
T ss_pred HHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH---------Hhhc-----------ccceee
Confidence 35667778899999999999999999999999988776666665433321 2221 123554
Q ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHH
Q 014228 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373 (428)
Q Consensus 296 vv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~E 373 (428)
|-+ | |+- |-+-+...+-.+-|+++|||-+. + .||+|+..+.|-.+++
T Consensus 488 VGA--M---PGk----------iIq~LK~v~t~NPliLiDEvDKl---------------G-~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 488 VGA--M---PGK----------IIQCLKKVKTENPLILIDEVDKL---------------G-SGHQGDPASALLELLD 534 (906)
T ss_pred ecc--C---ChH----------HHHHHHhhCCCCceEEeehhhhh---------------C-CCCCCChHHHHHHhcC
Confidence 311 1 111 12223333557899999999764 2 4788888887766664
No 188
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.99 E-value=0.0013 Score=69.08 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+++|+||+|||||+||+.+++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999888654
No 189
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.96 E-value=0.0035 Score=56.65 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=22.8
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
....+.+..+.|.|++|+|||+|+..+.....+.
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4567888999999999999999999888876654
No 190
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.95 E-value=0.0042 Score=65.85 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=43.8
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
+.+.||+.-+|.++. +.+|.-++|.|+||+|||||+.+++.+.++. ..-++|..-
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~ 116 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSG 116 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 457799999999975 6679999999999999999999999887643 233456544
No 191
>CHL00181 cbbX CbbX; Provisional
Probab=96.95 E-value=0.008 Score=60.09 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=24.6
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+...|..++|+||||||||++|..+++..
T Consensus 55 ~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 55 SSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999988754
No 192
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.94 E-value=0.0094 Score=57.69 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.++|+|++|+|||||++.+.+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4478999999999999999887653
No 193
>PTZ00035 Rad51 protein; Provisional
Probab=96.93 E-value=0.0049 Score=63.00 Aligned_cols=46 Identities=28% Similarity=0.292 Sum_probs=38.9
Q ss_pred ccceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 206 ~qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
....+.||++.+|.++- +.+|.-..|+|++|+|||+|++.++.+..
T Consensus 96 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 96 NIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred cCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 34678899999999974 55788899999999999999998886643
No 194
>PRK05642 DNA replication initiation factor; Validated
Probab=96.92 E-value=0.0027 Score=61.35 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+.|+|++|+|||+|++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999998887654
No 195
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0038 Score=64.54 Aligned_cols=103 Identities=14% Similarity=0.236 Sum_probs=64.3
Q ss_pred cccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcE-EEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEE
Q 014228 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297 (428)
Q Consensus 219 ~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~-~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv 297 (428)
..+.-+...++.|+|++|||||++++.+........... .+|+.| ...++...++.++.+.- +
T Consensus 35 ~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc-~~~~t~~~i~~~i~~~~----~----------- 98 (366)
T COG1474 35 PALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC-LELRTPYQVLSKILNKL----G----------- 98 (366)
T ss_pred HHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee-eeCCCHHHHHHHHHHHc----C-----------
Confidence 334445556799999999999999999988765544444 678877 45666666666665541 0
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014228 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 298 ~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
++|...+.....=..+-+++.. +++.+++++||+-.+...
T Consensus 99 -----~~p~~g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 99 -----KVPLTGDSSLEILKRLYDNLSK-KGKTVIVILDEVDALVDK 138 (366)
T ss_pred -----CCCCCCCchHHHHHHHHHHHHh-cCCeEEEEEcchhhhccc
Confidence 1111111111122223455555 789999999999655444
No 196
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.87 E-value=0.0018 Score=65.37 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=24.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.++.+.|+|++|||||+|+..|++...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999988753
No 197
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0028 Score=65.47 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=41.1
Q ss_pred CCCcchhcccccceeeccceeeccccccCCCc-eeEEECCCCCChhHHHHHHHHHHH
Q 014228 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGG-KIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 196 ~~P~~ler~~~qe~L~TGikvID~l~pigrGq-ri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+|...+++.+|+.... .+-..+..++-. -.+|.||+|+||+++|..+++..-
T Consensus 13 ~~P~~~~~iiGq~~~~~---~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 13 PHPRETTALFGHAAAEA---ALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCCCchhhccChHHHHH---HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 58888999999987753 333455556644 588999999999999999988753
No 198
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0013 Score=66.36 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=30.0
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el 277 (428)
=++||||||+|||-++..++.++..++--++--+.+..+--|-..+++++
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem 217 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM 217 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH
Confidence 37899999999999998888766433211111123333334445555554
No 199
>PHA00729 NTP-binding motif containing protein
Probab=96.83 E-value=0.0021 Score=62.24 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+++|+|+|||||||||..+++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988764
No 200
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.83 E-value=0.0092 Score=61.22 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=69.7
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhh-----cCcEEEEEeecCCcchHHHHHHHHHH
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~-----~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
...+.||++-+|.++. +.+|.-..|+|+||+|||+|+..++.+.... ...-++|.-..+ .....++.+-...
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~-~f~~eRl~qia~~ 180 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG-TFRPQRLIQIAER 180 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC-CccHHHHHHHHHH
Confidence 3468899999999875 4567888899999999999999998765421 112457776643 3333333322222
Q ss_pred ccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHH
Q 014228 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (428)
Q Consensus 280 ~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~ 342 (428)
.++ ..+..+++.. ++...+ ...+..... .+.+.+. ..+--|||+|+|+-+-+
T Consensus 181 ~~~---~~~~~l~~i~-~~~~~~--~e~~~~ll~---~~~~~~~--~~~~~LIVIDSI~alfr 232 (342)
T PLN03186 181 FGL---NGADVLENVA-YARAYN--TDHQSELLL---EAASMMA--ETRFALMIVDSATALYR 232 (342)
T ss_pred cCC---ChhhhccceE-EEecCC--HHHHHHHHH---HHHHHhh--ccCCCEEEEeCcHHHHH
Confidence 221 1111233432 222221 222222111 2223333 35566999999987644
No 201
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.82 E-value=0.0028 Score=62.03 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred cccccccCCCcchhcccccceeec-cceeeccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 189 HYLPIHREAPAFVEQATEQQILVT-GIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 189 ~~~pi~~~~P~~ler~~~qe~L~T-GikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
...||....|..+++..+-+.=.. =++-...++.-....++++||++|||||+|+..+.+..+
T Consensus 14 ~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 14 YLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred cEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 356777777767776665332110 011223444445668999999999999999999887654
No 202
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.001 Score=72.46 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=27.5
Q ss_pred eccccccC--CCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014228 217 VDLLAPYQ--RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 217 ID~l~pig--rGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
-+.|.-+| .-.-++++||||||||+++..+++....+
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 34444343 45678999999999999999998875444
No 203
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.81 E-value=0.0019 Score=67.07 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+||||||||+|+..+++..
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHh
Confidence 459999999999999999888754
No 204
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.80 E-value=0.0022 Score=67.90 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+.|+||+|+|||+|++.+++...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999888754
No 205
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.80 E-value=0.0015 Score=74.01 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+-.+++|+|+||||||+|+..++....
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988764
No 206
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0018 Score=70.09 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.1
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhhcCcE
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKAHGGF 257 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~~~~~ 257 (428)
++|.||||||||.||+.+++...-.+..+
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 68899999999999999988765444344
No 207
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0033 Score=65.80 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEE-EEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCC
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNE 303 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~-V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~ 303 (428)
...-+.||||.|.|||+|++.+.+...+.++... +|.-. | .-..+++..+.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s-e--~f~~~~v~a~~~~~---------------------- 166 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS-E--DFTNDFVKALRDNE---------------------- 166 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH-H--HHHHHHHHHHHhhh----------------------
Confidence 3677899999999999999999887666555554 44422 2 12223333333321
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014228 304 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 304 p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
.+.|+... .--+|++|||..++..
T Consensus 167 ---------------~~~Fk~~y-~~dlllIDDiq~l~gk 190 (408)
T COG0593 167 ---------------MEKFKEKY-SLDLLLIDDIQFLAGK 190 (408)
T ss_pred ---------------HHHHHHhh-ccCeeeechHhHhcCC
Confidence 56676645 4448999999887765
No 208
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.76 E-value=0.0035 Score=71.60 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=49.8
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHHHH--HhhcCcEEEEEeecCCcchHHHHHHHHHHc
Q 014228 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGFSVFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~--~~~~~~~~V~~giGeR~~Ev~dl~~el~e~ 280 (428)
++.+.|...+- |-++|+|..|+|||||++.+-|.. .+.+.|+.+|+.+++ .....++++++.+.
T Consensus 169 kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk-~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 169 KLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK-EFTTRKIQQTILER 234 (889)
T ss_pred HHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc-cccHHhHHHHHHHH
Confidence 55666666555 999999999999999998876654 346778889999976 67777777777664
No 209
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.0018 Score=65.76 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=32.5
Q ss_pred hcccc-cceeeccceeeccccccCCCcee-EEECCCCCChhHHHHHHHHHH
Q 014228 202 EQATE-QQILVTGIKVVDLLAPYQRGGKI-GLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 202 er~~~-qe~L~TGikvID~l~pigrGqri-~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++..+ |+++. +.+-.++..++.... +|+||+|+||+++|..+++..
T Consensus 5 ~~i~~~q~~~~---~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 5 EQLTALQPVVV---KMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHhhHHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44444 44443 344455566776665 899999999999999998775
No 210
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0061 Score=56.83 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=57.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhcCc--EEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGG--FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~~~--~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
.|++|+|+||+||||+|..|++...-.|-+ ..-..++.++ .|.....+.+++.+-+--
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~lv~------------------- 60 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKGELVP------------------- 60 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHHHHcCCccc-------------------
Confidence 378999999999999999998763222222 1133566555 555555566666642100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcC
Q 014228 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLG 352 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llg 352 (428)
--.+-..+-+.+.....+. .+|+|..-|+..-.+.+.-.+.
T Consensus 61 ------d~i~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 61 ------DEIVNGLVKERLDEADCKA-GFILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred ------hHHHHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHHHHHHHH
Confidence 0112223345544422344 8999999776655555544433
No 211
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.70 E-value=0.0016 Score=68.04 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+..++|+||||||||+|+..+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999888754
No 212
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.67 E-value=0.0061 Score=64.78 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=44.3
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
+.+.||+.-+|.++. +.+|+-++|.|+||+|||||+.+++.+.+++ ..-++|..-
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~ 130 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSG 130 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence 357899999999984 7899999999999999999999998887653 223456543
No 213
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.67 E-value=0.0055 Score=68.86 Aligned_cols=110 Identities=21% Similarity=0.358 Sum_probs=70.8
Q ss_pred ceeeccceeeccccc---cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccc
Q 014228 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (428)
Q Consensus 208 e~L~TGikvID~l~p---igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~ 284 (428)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+..++.+..+ ....++|.---+..+. ..+..-|+ +
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~~~-----~~A~~lGv-D 111 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALDP-----DYAKKLGV-D 111 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchhH-----HHHHHcCC-C
Confidence 478899999999987 567899999999999999999887776543 3456677655443331 12222232 1
Q ss_pred cCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH
Q 014228 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (428)
Q Consensus 285 ~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa 341 (428)
.++. ++.+.+ +.++ .+.+++.+-. .++--+||+|+|+-+.
T Consensus 112 ------l~~l--lv~~~~--~~E~------~l~~i~~lv~-~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 112 ------TDSL--LVSQPD--TGEQ------ALEIADMLIR-SGALDIVVIDSVAALV 151 (790)
T ss_pred ------hhHe--EEecCC--CHHH------HHHHHHHHhh-cCCCeEEEEcchhhhc
Confidence 1222 233322 2233 3334555444 5778899999998665
No 214
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.0079 Score=61.30 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 224 QRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++. +-++|.||+|+|||++|..+++..-
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 554 4578999999999999999988753
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.64 E-value=0.0074 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+.++|+|++|||||+|+..|++...+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999987654
No 216
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.63 E-value=0.0011 Score=61.52 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=26.1
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
|..++..+..+.+.|+||.|+|||+|+..+++..
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3344445668999999999999999999888764
No 217
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.61 E-value=0.0064 Score=63.94 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=34.0
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHH
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~ 278 (428)
+.++.+++++||+|||||+|+..+..+.+. ..| +.-.+.+++.++.
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~-------~sG---~f~T~a~Lf~~L~ 251 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVIL-------ISG---GTITVAKLFYNIS 251 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHH-------HcC---CcCcHHHHHHHHH
Confidence 457899999999999999999988776321 122 5666777766664
No 218
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.57 E-value=0.0016 Score=66.75 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...++|+||||||||+|+..+++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4459999999999999999888754
No 219
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.55 E-value=0.017 Score=57.59 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhc---CcEEEEEe--------ecCCcchHHHHHHHHHHccccccCcccCCCe
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAH---GGFSVFAG--------VGERTREGNDLYREMIESGVIKLGDKQADSK 293 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~---~~~~V~~g--------iGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~ 293 (428)
.+-.++|+||||||||++|..+++...+.. .+-.+++. +|+.... .+++.+. + ..
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~----~~~~~~~---------a-~~ 122 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPK----TKEILKR---------A-MG 122 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHH----HHHHHHH---------c-cC
Confidence 455799999999999999988877653210 01112221 2221111 1222221 1 12
Q ss_pred EEEEEecCCCC--H-HHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCch-hHHHHHHHhHHhcCCCCCCCCCCCChhHhHH
Q 014228 294 CALVYGQMNEP--P-GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF-RFTQANSEVSALLGRIPSAVGYQPTLATDLG 369 (428)
Q Consensus 294 tvvv~~t~d~p--~-~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDdit-Rfa~A~reis~llgr~p~~~gyp~~l~~~l~ 369 (428)
.+++..-.+.- + ..+-......-++-+..-+ ...++++|+-.-. +.-.-++....+.+|.+...-||+.-..++.
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~-~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN-QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc-CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 45555433210 0 0000011111122333322 3345666554433 3334444556778888776668887777777
Q ss_pred HHHHhhcCC
Q 014228 370 GLQERITTT 378 (428)
Q Consensus 370 ~l~ERa~~~ 378 (428)
.|.++..+.
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 777776553
No 220
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.54 E-value=0.0015 Score=69.89 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+||||||||+|++.+++..
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc
Confidence 359999999999999999887653
No 221
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0023 Score=63.05 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=25.0
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+...+-+++|||||||||.|+...+++...
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 455677899999999999999988887644
No 222
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.50 E-value=0.011 Score=60.27 Aligned_cols=108 Identities=26% Similarity=0.413 Sum_probs=64.7
Q ss_pred ceeeccceeecccccc---CCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHH-Hcccc
Q 014228 208 QILVTGIKVVDLLAPY---QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI-ESGVI 283 (428)
Q Consensus 208 e~L~TGikvID~l~pi---grGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~-e~~~~ 283 (428)
+.+.||.-.||..++. .+|.=+=|+|++++|||||+..++.+..+ ....++|.-. |..-. .+.. ..|+
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~-~g~~~a~ID~-e~~ld-----~~~a~~lGv- 103 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-QGGICAFIDA-EHALD-----PEYAESLGV- 103 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEES-SS--------HHHHHHTT--
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc-ccceeEEecC-cccch-----hhHHHhcCc-
Confidence 5788999999999873 35666779999999999999988877543 3567888766 32222 2222 3342
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhH
Q 014228 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (428)
Q Consensus 284 ~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRf 340 (428)
..++.. + .+.+. ++ -++.++|.+.. .|.-.++++|++.-.
T Consensus 104 ------dl~rll-v-~~P~~--~E------~al~~~e~lir-sg~~~lVVvDSv~al 143 (322)
T PF00154_consen 104 ------DLDRLL-V-VQPDT--GE------QALWIAEQLIR-SGAVDLVVVDSVAAL 143 (322)
T ss_dssp -------GGGEE-E-EE-SS--HH------HHHHHHHHHHH-TTSESEEEEE-CTT-
T ss_pred ------cccceE-E-ecCCc--HH------HHHHHHHHHhh-cccccEEEEecCccc
Confidence 123433 3 33221 22 35677888776 677778999999755
No 223
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.49 E-value=0.02 Score=58.11 Aligned_cols=44 Identities=32% Similarity=0.339 Sum_probs=37.3
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+.||++-+|.++- +..|.-+.|+|+||+|||+|+..++.+..
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~ 121 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQ 121 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence 468899999999875 45688889999999999999999987643
No 224
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0043 Score=69.79 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+..+++|+|+||||||+|+..++....
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999999887653
No 225
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.45 E-value=0.018 Score=56.59 Aligned_cols=127 Identities=22% Similarity=0.225 Sum_probs=71.3
Q ss_pred cccceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhh-----cCcEEEEEeecCCcchHHHHHHHH
Q 014228 205 TEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREM 277 (428)
Q Consensus 205 ~~qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~-----~~~~~V~~giGeR~~Ev~dl~~el 277 (428)
.....|.||.+.||.++- +..|.=.=|+|+||+|||.|+..++.+.... ...-.||.-. |.......+. ++
T Consensus 15 ~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT-e~~f~~~Rl~-~i 92 (256)
T PF08423_consen 15 KRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT-EGTFSPERLQ-QI 92 (256)
T ss_dssp HTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES-SSSS-HHHHH-HH
T ss_pred hcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC-CCCCCHHHHH-HH
Confidence 345678999999999973 4567777899999999999999998775422 1234577654 5555555543 33
Q ss_pred HHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014228 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 278 ~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
.+.-- ...++.+++..+ +-..+- .+. ..... .+...+.+ .+--||++|+|+-+-+.
T Consensus 93 ~~~~~--~~~~~~l~~I~v-~~~~~~--~~l-~~~L~--~l~~~l~~--~~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 93 AERFG--LDPEEILDNIFV-IRVFDL--EEL-LELLE--QLPKLLSE--SKIKLIVIDSIAALFRS 148 (256)
T ss_dssp HHHTT--S-HHHHHHTEEE-EE-SSH--HHH-HHHHH--HHHHHHHH--SCEEEEEEETSSHHHHH
T ss_pred hhccc--cccchhhhceee-eecCCH--HHH-HHHHH--HHHhhccc--cceEEEEecchHHHHHH
Confidence 33311 111123344333 332221 222 22221 22344443 56779999999876554
No 226
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.43 E-value=0.0036 Score=67.11 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..-++|+||||||||.++..+++..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3459999999999999999998765
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.43 E-value=0.0038 Score=69.98 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+..++|+||||||||+|++.+++..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Confidence 446779999999999999999888764
No 228
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.40 E-value=0.0036 Score=70.61 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=24.9
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
-.+|..++|+||||||||++++.+++...
T Consensus 344 ~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 344 KMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34677899999999999999999988753
No 229
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.38 E-value=0.0055 Score=64.38 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+++|.||+|||||+|++.++...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3589999999999999999888653
No 230
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.37 E-value=0.015 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=20.8
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHh
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+.|.|++|+|||+++...+.+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5789999999999998887776543
No 231
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.37 E-value=0.013 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhc
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAH 254 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~ 254 (428)
--|+.|.|++|+|||+|+..+..+..+.+
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 35899999999999999999988764433
No 232
>PRK08116 hypothetical protein; Validated
Probab=96.36 E-value=0.0057 Score=60.49 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.5
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.-++|+|++|+|||+|+..|++...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34999999999999999999887654
No 233
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.34 E-value=0.0027 Score=71.74 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+|..++|+||||+|||+++..++...
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999888765
No 234
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0044 Score=66.07 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
....++|+||||||||.|+..+++..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~ 300 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES 300 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC
Confidence 33479999999999999999888743
No 235
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0025 Score=65.97 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.-++++||||+|||.||..++-...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 3478999999999999988876543
No 236
>CHL00176 ftsH cell division protein; Validated
Probab=96.31 E-value=0.0038 Score=68.99 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|+||||||||+|++.++...
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999887653
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.011 Score=60.29 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=28.4
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+.++.+-. .++.+.|+|++|+|||+|+..|++....
T Consensus 174 ~f~~~f~~--~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 174 NFIENFDK--NNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35565544 3488999999999999999999887643
No 238
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0089 Score=64.95 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
-+=+++|||||||||-||..++|...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc
Confidence 35589999999999999998887653
No 239
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.25 E-value=0.01 Score=50.23 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=20.6
Q ss_pred eEEECCCCCChhHHHHHHHHHHHh
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+-|+|+||+|||+|+..++....+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887654
No 240
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.24 E-value=0.0051 Score=65.72 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.4
Q ss_pred eeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 215 KVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 215 kvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+|+.+. -.-.|+.++|+|+||||||+||..++...
T Consensus 27 ~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 27 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 4444443 45678999999999999999999888754
No 241
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.021 Score=56.47 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=40.0
Q ss_pred CCCce-eEEECCCCCChhHHHHHHHHHHHh---------------------hcCcEEEEEeecCCcch-HHHHHHHHHHc
Q 014228 224 QRGGK-IGLFGGAGVGKTVLIMELINNVAK---------------------AHGGFSVFAGVGERTRE-GNDLYREMIES 280 (428)
Q Consensus 224 grGqr-i~IfG~~G~GKTtLa~~ii~n~~~---------------------~~~~~~V~~giGeR~~E-v~dl~~el~e~ 280 (428)
+++.. ++|.||+|+|||++|..+++..-. .|.++..+..-++|... ..+.++++.+.
T Consensus 21 ~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~ 100 (325)
T COG0470 21 GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEF 100 (325)
T ss_pred CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHH
Confidence 46666 999999999999999999876531 34566666666666652 44455666554
No 242
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.20 E-value=0.0058 Score=59.67 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=45.3
Q ss_pred cccCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 193 i~~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++.+|..+.+.+++|.-.. -+-.+..-|.-.+++|-||||+||||-+..+++..
T Consensus 18 VeKYrP~~l~dIVGNe~tv~---rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVE---RLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCchHHHHhhCCHHHHH---HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 77889999999999987543 34445667888999999999999999988888764
No 243
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.0031 Score=67.79 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=44.5
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCC-ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+-||..+++.+||+|+. +.|...+..+|- +-.+|.|+.||||||+++.+++...
T Consensus 9 KyRP~~F~evvGQe~v~---~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN 63 (515)
T COG2812 9 KYRPKTFDDVVGQEHVV---KTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN 63 (515)
T ss_pred HhCcccHHHhcccHHHH---HHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc
Confidence 45999999999999997 667777666664 4567889999999999999998754
No 244
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.09 E-value=0.03 Score=54.01 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=29.5
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014228 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.-|..+.+..|+.++|.||.|.||||+++.+..+.-.+
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la 58 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA 58 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34444556789999999999999999998887754333
No 245
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.07 E-value=0.005 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++|.|+||+||||+++.++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998754
No 246
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.04 E-value=0.01 Score=56.60 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=38.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchH
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev 270 (428)
+.+|+-+.|.|+||+|||+++.+++.+.+.++..-.+|....+..+++
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHH
Confidence 578899999999999999999999988876644555777776655554
No 247
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0036 Score=62.94 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.7
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+++|||||+||+-||...+-.
T Consensus 168 giLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhh
Confidence 3789999999999999877643
No 248
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0034 Score=69.11 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.0
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhc
Q 014228 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~ 254 (428)
+..+.+--+|.=+++.||||||||+|++.|++...+.|
T Consensus 341 V~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 341 VQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred HHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 44556678999999999999999999999998876543
No 249
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.02 E-value=0.15 Score=46.29 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=28.2
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~d 272 (428)
+++.|++|+||||++..++...++. ..-.+++.+.-+..+..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~~~ 45 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAAIE 45 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHHHH
Confidence 6889999999999999988776543 222334445444334433
No 250
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.02 E-value=0.024 Score=52.01 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=25.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+|+-..|.|++|+|||+++.+++...+.
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999999988765
No 251
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.00 E-value=0.042 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+|.-++|.|+||+||||+++.++...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 36678999999999999999887653
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.98 E-value=0.2 Score=46.12 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=66.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC--CcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE--RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe--R~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
+-+-|+.++|.||||+|..++...+..-..+.++-.+.- ..-|.. +++.+ +.++.- ...+...+. . +.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~-~l~~l---~~v~~~---~~g~~~~~~--~-~~ 72 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELK-ALERL---PNIEIH---RMGRGFFWT--T-EN 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHH-HHHhC---CCcEEE---ECCCCCccC--C-CC
Confidence 357789999999999998888765443223334333322 233332 23333 111100 001111111 1 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhH-----HHHHHHhHHhcCCCCC
Q 014228 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF-----TQANSEVSALLGRIPS 356 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRf-----a~A~reis~llgr~p~ 356 (428)
+.+....+..+...|+.... .++.-|||+||+..- -.....+..+-.||+.
T Consensus 73 ~~~~~~~a~~~~~~a~~~~~-~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~ 128 (159)
T cd00561 73 DEEDIAAAAEGWAFAKEAIA-SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPED 128 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC
Confidence 55667777888888877666 688889999999532 3333345555556553
No 253
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0056 Score=59.79 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|.+.+|+|++|||||||++.++-
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 5799999999999999999999988774
No 254
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.95 E-value=0.02 Score=55.33 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.2
Q ss_pred ceeEEECCCCCChhHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii 247 (428)
.+++|+|+||+||||+|..+.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 568999999999999997663
No 255
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.94 E-value=0.0082 Score=67.32 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++|+||||||||+|+..+++..
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 348999999999999999888764
No 256
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.92 E-value=0.012 Score=54.57 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=33.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHHH------hhcCcEEEEEeecCCcchHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVA------KAHGGFSVFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~------~~~~~~~V~~giGeR~~Ev~dl~~el~e 279 (428)
-.+|+||||||||+++..++.... ....+-.|.+ +......+.+++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~-~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILV-VSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEE-EESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhcccccee-ecCCchhHHHHHHHHHh
Confidence 478999999999998888887762 1222333433 34667777888888776
No 257
>PRK14974 cell division protein FtsY; Provisional
Probab=95.92 E-value=0.062 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++...++|.|++|+||||++.-++....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999988887654
No 258
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.90 E-value=0.028 Score=51.89 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=48.7
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCC-cchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER-TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR-~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~ 307 (428)
++|.|++|+|||+++..++.+ ...-.+|....+. ..|+.+-++...+.. .....+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~R--------~~~w~t------------ 57 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKRR--------PAHWRT------------ 57 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHhC--------CCCceE------------
Confidence 578999999999999988754 2222355544432 334444333333321 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHH
Q 014228 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS 345 (428)
Q Consensus 308 r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~r 345 (428)
......+.+.+.+ ..+.-++++|.++-|.....
T Consensus 58 ----~E~~~~l~~~l~~-~~~~~~VLIDclt~~~~n~l 90 (169)
T cd00544 58 ----IETPRDLVSALKE-LDPGDVVLIDCLTLWVTNLL 90 (169)
T ss_pred ----eecHHHHHHHHHh-cCCCCEEEEEcHhHHHHHhC
Confidence 1122334555544 22344799999999966543
No 259
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.88 E-value=0.015 Score=57.79 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=26.0
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.++.++. .++.++|.||+|||||++++....+
T Consensus 25 ll~~l~~--~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 25 LLDLLLS--NGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHH--CTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHH--cCCcEEEECCCCCchhHHHHhhhcc
Confidence 4566644 5789999999999999999887754
No 260
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.88 E-value=0.034 Score=63.20 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=31.2
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhh-----cCcEE-EEEeecCCcchHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKA-----HGGFS-VFAGVGERTREGNDLYREMIE 279 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~-----~~~~~-V~~giGeR~~Ev~dl~~el~e 279 (428)
+.|+|+||||||+++..+++..... ...+. ||+.| .+......++..+.+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC-m~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING-MNVVHPNAAYQVLYK 839 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC-CccCCHHHHHHHHHH
Confidence 4599999999999999887664321 11233 56655 333444555555543
No 261
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.052 Score=55.36 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=24.9
Q ss_pred cccccCC-CceeEEECCCCCChhHHHHHHHHHHH
Q 014228 219 LLAPYQR-GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 219 ~l~pigr-Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
..+..++ .+-.+|.||.|+||+++|..+++..-
T Consensus 16 ~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 16 QAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred HHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 3344455 46677889999999999999987753
No 262
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.70 E-value=0.41 Score=45.36 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=71.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeec-C-CcchHHHHHHHHHHccccccCcccCCCeEEEEEecCC
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG-E-RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giG-e-R~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d 302 (428)
..+.+.|++++|.||||.|.-++...+..-..+.++-.+. . ...|.. -+.....++. ....+...+. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~----~l~~l~~v~~---~~~g~~~~~~--~- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERN----LLEFGGGVEF---HVMGTGFTWE--T- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHH----HHhcCCCcEE---EECCCCCccc--C-
Confidence 4578999999999999999988876543323444444443 3 233322 1211111110 0011111111 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH-----HHHHHhHHhcCCCCC
Q 014228 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT-----QANSEVSALLGRIPS 356 (428)
Q Consensus 303 ~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa-----~A~reis~llgr~p~ 356 (428)
+++.+....+..+...|+.... .|+.-+||+|||..-. .....+..+-.||+.
T Consensus 91 ~~~~e~~~~~~~~~~~a~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~ 148 (191)
T PRK05986 91 QDRERDIAAAREGWEEAKRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGM 148 (191)
T ss_pred CCcHHHHHHHHHHHHHHHHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCC
Confidence 3445777788888888877665 6888899999996332 244456666667664
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.056 Score=56.16 Aligned_cols=44 Identities=34% Similarity=0.521 Sum_probs=31.8
Q ss_pred eeeccceeeccc-cccCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 209 ILVTGIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 209 ~L~TGikvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+..-+.+++.. .-+.+|+.++|.||+|+||||++..|+.....
T Consensus 119 ~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 119 VLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred HHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333334444443 23678999999999999999999999876543
No 264
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.047 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.7
Q ss_pred eEEECCCCCChhHHHHHHHHHHHh
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
+++-|.||+||||++..+++...+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 678999999999999999887543
No 265
>PRK07261 topology modulation protein; Provisional
Probab=95.65 E-value=0.017 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+|++|+|++|+|||||+..++...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999887653
No 266
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.63 E-value=0.023 Score=49.60 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.2
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|+|+||||||+|+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998765
No 267
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.62 E-value=0.034 Score=59.03 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+..++|+|+||||||++|..+++..
T Consensus 192 ~~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999888765
No 268
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.53 E-value=0.013 Score=54.48 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=28.8
Q ss_pred eeeccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 215 kvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+++..+.+..|..++|.|+.|+|||||+..|+..
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 44555568899999999999999999999877643
No 269
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.51 E-value=0.041 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+++|.||.|+|||||++.+..+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~ 53 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV 53 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 4889999999999999999887553
No 270
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.50 E-value=0.088 Score=52.65 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=66.8
Q ss_pred cceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHccccc
Q 014228 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (428)
Q Consensus 207 qe~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~~~~~ 284 (428)
-+.+.||.+.+|.++- +-+|.-.=||||+|+|||+|++.++.+..+. .+.++|.-- |.+....++..-..+.
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDt-E~~l~p~r~~~l~~~~---- 112 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDT-EHALDPERAKQLGVDL---- 112 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC-CCeEEEEeC-CCCCCHHHHHHHHHhh----
Confidence 4577899999999875 2345566789999999999999998886543 345666533 4444444433222220
Q ss_pred cCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC--cEEEEEeCchhHH
Q 014228 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ--DVLLFIDNIFRFT 341 (428)
Q Consensus 285 ~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk--~VLL~iDditRfa 341 (428)
..-+++++.+.. .-++.+++.+.. .+. --|+++|+++-+-
T Consensus 113 --------~d~l~v~~~~~~--------e~q~~i~~~~~~-~~~~~i~LvVVDSvaa~~ 154 (279)
T COG0468 113 --------LDNLLVSQPDTG--------EQQLEIAEKLAR-SGAEKIDLLVVDSVAALV 154 (279)
T ss_pred --------hcceeEecCCCH--------HHHHHHHHHHHH-hccCCCCEEEEecCcccc
Confidence 112334444331 223333444433 233 5699999997443
No 271
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.023 Score=59.86 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=40.4
Q ss_pred CccccccccCCCcchhcccccceeeccceeeccccccCCCc------------eeEEECCCCCChhHHHHHHHHHH
Q 014228 187 TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG------------KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 187 ~~~~~pi~~~~P~~ler~~~qe~L~TGikvID~l~pigrGq------------ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..+|.++.-+.|..++-..-+..+- -+++|-+...-+|+ --+++||||||||+++..||+..
T Consensus 186 ~~~W~~v~f~HpstF~TlaMd~~~K--~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 186 GGEWRSVGFPHPSTFETLAMDPDLK--ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred CCcceecCCCCCCCccccccChhHH--HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc
Confidence 3466777777777766554444332 23444444443332 25899999999999999998765
No 272
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.49 E-value=0.046 Score=64.44 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=30.0
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEE
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~ 261 (428)
....+.-++|+|++|+||||||+.+.+.....+ +.++|.
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F-~g~vfv 241 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF-QSSVFI 241 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC-CeEEEe
Confidence 356788999999999999999998887765443 444443
No 273
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.051 Score=60.17 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=36.6
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe 265 (428)
+.+.|+-+-+.++|.||+|+|||+|+..+++...+++.-...++-|..
T Consensus 423 ~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 423 QELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST 470 (952)
T ss_pred hhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh
Confidence 566678899999999999999999999999987654322224555543
No 274
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.012 Score=57.64 Aligned_cols=34 Identities=21% Similarity=0.517 Sum_probs=28.0
Q ss_pred ceeeccc-cccCCCceeEEECCCCCChhHHHHHHH
Q 014228 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 214 ikvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
..+++.+ +.+.+|+-+.|.||+|||||||+..|+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444444 478999999999999999999998776
No 275
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.45 E-value=0.07 Score=50.69 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=26.1
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
|.-+....|.-++|.||.|+||||+++.+...+
T Consensus 21 ~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 21 DIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred eeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 333456678899999999999999998876543
No 276
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.014 Score=60.02 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=26.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEee
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~gi 263 (428)
.-+++|||||||||.||..+++.....+..+.+....
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 128 KGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred ccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 4589999999999999998887654444333343333
No 277
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.45 E-value=0.022 Score=59.75 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=48.4
Q ss_pred ceeeccceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchH
Q 014228 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (428)
Q Consensus 208 e~L~TGikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev 270 (428)
.-+.||+..+|.++- +.+|+=++|-|.||+|||+++..++.+.+..+..-.+|...-+...++
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 347899999999874 778999999999999999999999998765444334556665544444
No 278
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=95.43 E-value=0.027 Score=58.66 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=31.7
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhc
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~ 254 (428)
..|+....||.++|=|.||+|||+++.++.+....++
T Consensus 2 ~~FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~ 38 (484)
T PF07088_consen 2 KRFFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHG 38 (484)
T ss_pred chhhcCCCCcEEEEecCCCCCceeeehhhHHHHhccC
Confidence 3577789999999999999999999999988775443
No 279
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.40 E-value=0.023 Score=59.84 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=37.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhcCcEE--EEEeecCCcchHHHHHHHHHHc
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFS--VFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~--V~~giGeR~~Ev~dl~~el~e~ 280 (428)
.+++|+||||||||+|++.++......+..+. .|...|--++++.++++.+.+.
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDA 103 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHH
Confidence 68999999999999999999887644333333 3433454555666666665444
No 280
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.39 E-value=0.16 Score=46.14 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+|.-+.|.|.+|+||||+++.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987754
No 281
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.35 E-value=0.013 Score=49.47 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=19.1
Q ss_pred eEEECCCCCChhHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n 249 (428)
|+|.|.+|+|||||+..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988766
No 282
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.34 E-value=0.0091 Score=65.77 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=40.8
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..||..+++..+|++.... ++.. +-....+.++|+||+|||||||++.+.+..
T Consensus 147 ~~rp~~~~~iiGqs~~~~~--l~~~-ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKA--LLAK-VASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred hcCcCcHHhceeCcHHHHH--HHHH-HhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5679999999999887652 3333 345667889999999999999998776543
No 283
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.31 E-value=0.19 Score=51.16 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=25.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
.+|+.++|.||+|+||||++..++.....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999999877643
No 284
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.092 Score=53.69 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=22.5
Q ss_pred cCC-CceeEEECCCCCChhHHHHHHHHHH
Q 014228 223 YQR-GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igr-Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+| .+-.+|.||+|+||+++|..+++..
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 344 4566688999999999999988775
No 285
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.26 E-value=0.043 Score=60.88 Aligned_cols=37 Identities=35% Similarity=0.488 Sum_probs=25.9
Q ss_pred eEEECCCCCChhHHHHHHHHHHHhhcCcEEEE--EeecCCcchH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVF--AGVGERTREG 270 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~--~giGeR~~Ev 270 (428)
+++.||||.||||||+.|++.. +++|. -+-.||.-++
T Consensus 329 lLL~GppGlGKTTLAHViAkqa-----GYsVvEINASDeRt~~~ 367 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQA-----GYSVVEINASDERTAPM 367 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhc-----CceEEEecccccccHHH
Confidence 4579999999999999887653 55543 3455655444
No 286
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.045 Score=57.23 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=39.3
Q ss_pred eeeccceeecccc--ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecC
Q 014228 209 ILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (428)
Q Consensus 209 ~L~TGikvID~l~--pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGe 265 (428)
.+.||+.=+|+.+ =+.+|.=++|=|+||.|||||+.+++.+.++.. -+.|+ .||
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYV-sGE 129 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYV-SGE 129 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEE-eCC
Confidence 3445666666655 247899999999999999999999998887543 33444 455
No 287
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.25 E-value=0.026 Score=52.10 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=25.2
Q ss_pred eeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCC
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR 266 (428)
.++|.|++|+|||+++..++.+.. .-.+|.+.++-
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~----~~~~~iat~~~ 37 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG----LQVLYIATAQP 37 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC----CCcEeCcCCCC
Confidence 689999999999999998875431 11356555543
No 288
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.21 E-value=0.027 Score=54.83 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=43.0
Q ss_pred eeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcch
Q 014228 210 LVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (428)
Q Consensus 210 L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~E 269 (428)
+.||...+|.++ -+.+|+=..|-|.||+|||+++..++.+.+..+..-.+|.......++
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEE 62 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHH
Confidence 468999999987 467788889999999999999999999987654333355555443333
No 289
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.20 E-value=0.016 Score=49.78 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+..|+.++|.|++|+|||||+..+.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 457789999999999999999998765
No 290
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.083 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.++|.||+|+|||++|..+++..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998774
No 291
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.04 Score=56.13 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=19.4
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++-||||||||+|+..++...
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhh
Confidence 6789999999999999998764
No 292
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.18 E-value=0.016 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999887643
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.17 E-value=0.017 Score=53.41 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999877643
No 294
>PRK06620 hypothetical protein; Validated
Probab=95.17 E-value=0.015 Score=55.56 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=18.9
Q ss_pred ceeEEECCCCCChhHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~ 248 (428)
..+.||||+|+|||||++.+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999986544
No 295
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.13 E-value=0.14 Score=49.22 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=27.3
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
|.-+...++..++|.|+.+.|||++++.+..++.
T Consensus 22 di~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~ 55 (218)
T cd03286 22 DVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVI 55 (218)
T ss_pred eeEEeecCCcEEEEECCCCCchHHHHHHHHHHHH
Confidence 4444556788999999999999999988877644
No 296
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.016 Score=60.86 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.8
Q ss_pred eeEEECCCCCChhHHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+++|||||+|||.|+..++-...
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~ 211 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG 211 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc
Confidence 688999999999999998886543
No 297
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.026 Score=57.32 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=49.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhc--CcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~--~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
.+++++||.|+|||-||+-+++-..-.| .|..-..--|=-+++|..++..+++.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqa------------------------ 153 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQA------------------------ 153 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHH------------------------
Confidence 5799999999999999999887542211 12221211222334676667666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014228 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
|+|-.. .-++=++++|||-+-++-
T Consensus 154 --------------adydV~-rAerGIIyIDEIDKIark 177 (408)
T COG1219 154 --------------ADYDVE-RAERGIIYIDEIDKIARK 177 (408)
T ss_pred --------------cccCHH-HHhCCeEEEechhhhhcc
Confidence 344333 334559999999888765
No 298
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.11 E-value=0.014 Score=50.57 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=24.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEEccCCCccccceeeecc
Confidence 4578899999999999999999987653
No 299
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.018 Score=53.99 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+..|+.++|.|++|+|||||+..|+-
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999999987764
No 300
>PRK14530 adenylate kinase; Provisional
Probab=95.08 E-value=0.02 Score=54.25 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+.+++|+|+||+||||++..++...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999887654
No 301
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.11 Score=54.97 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++..++|.||+|+||||++..++...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 302
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.06 E-value=0.019 Score=53.87 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+..|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 303
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.05 E-value=0.018 Score=55.08 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 304
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.04 E-value=0.019 Score=53.57 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 305
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.03 E-value=0.019 Score=54.46 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=26.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|+.++|.|++|+|||||+..|+-..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 478899999999999999999998776543
No 306
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.03 E-value=0.018 Score=59.26 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=29.1
Q ss_pred cceeec-cccccCCCceeEEECCCCCChhHHHHHHH
Q 014228 213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 213 GikvID-~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+..++| .-+.+.+|.-+.|.||+|||||||+++|+
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 445555 34578999999999999999999999887
No 307
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.03 E-value=0.019 Score=53.80 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999877653
No 308
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.02 E-value=0.029 Score=59.16 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=36.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHhhcCcEE--EEEeecCCcchHHHHHHHHHHc
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS--VFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~--V~~giGeR~~Ev~dl~~el~e~ 280 (428)
.++++|+||+|||||+|+..++.....++..+. .|...|-.++++.++++++.+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~ 106 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEI 106 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHH
Confidence 478999999999999999999877543332222 2433444455666666666544
No 309
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.00 E-value=0.25 Score=49.03 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=25.4
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..+.+.+.|.|++|+||||++..++....+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 456788999999999999999999877644
No 310
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.97 E-value=0.02 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999877643
No 311
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=0.027 Score=55.01 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCCce-eEEECCCCCChhHHHHHHHHHHHh
Q 014228 224 QRGGK-IGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 224 grGqr-i~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..|-. .+|+||||||||||+++|+++.+.
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred hcCceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 44444 889999999999999999998764
No 312
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.02 Score=54.31 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+..|+.++|.|++|+|||||+..|+..
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999999888754
No 313
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.97 E-value=0.019 Score=58.80 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.9
Q ss_pred cccccCCCceeEEECCCCCChhHHHHHHH
Q 014228 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 219 ~l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
.-+.+..|.-+.|.||+|||||||+.+|+
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33578999999999999999999998887
No 314
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.96 E-value=0.021 Score=53.53 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999887643
No 315
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.95 E-value=0.023 Score=56.45 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=19.0
Q ss_pred eEEECCCCCChhHHHHHHHHHHHh
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
++|+|-||+||||++..|......
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Confidence 679999999999999999887654
No 316
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.022 Score=52.30 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999877643
No 317
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.94 E-value=0.021 Score=53.90 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999877643
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.92 E-value=0.021 Score=53.04 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|..++|.||+|+|||||+..+.
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999999998764
No 319
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.92 E-value=0.02 Score=54.00 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999877643
No 320
>PRK14531 adenylate kinase; Provisional
Probab=94.92 E-value=0.022 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++++|+|+||+||||++..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999887654
No 321
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.90 E-value=0.061 Score=50.43 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|.+++|.|+.|+|||||+..++.+.
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 345567999999999999999999887543
No 322
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.90 E-value=0.093 Score=53.66 Aligned_cols=23 Identities=48% Similarity=0.725 Sum_probs=20.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-++|-|+||||||.|+..+++..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999998876
No 323
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.88 E-value=0.2 Score=48.15 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
|.-.+|+|++|+|||+|+.+++.+++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344689999999999999999987653
No 324
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.87 E-value=0.018 Score=51.89 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=17.2
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
|+.|.|++|+|||||+..++..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999988754
No 325
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.022 Score=54.37 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999877643
No 326
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.86 E-value=0.1 Score=59.08 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=42.1
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHHHHHHc
Q 014228 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~el~e~ 280 (428)
++.|-......-+.|.||+|.||||++....+. .. -++|..+.+...+...|+..|...
T Consensus 23 ~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~----~~-~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 23 LAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG----KN-NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred HHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh----CC-CeEEEecCcccCCHHHHHHHHHHH
Confidence 344444455667899999999999999876542 22 367788888888877777766554
No 327
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.035 Score=59.75 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.3
Q ss_pred eEEECCCCCChhHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n 249 (428)
+++.||||||||-||+.++-.
T Consensus 340 VLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcc
Confidence 789999999999999887643
No 328
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.86 E-value=0.022 Score=53.22 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+..+|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 329
>PRK05748 replicative DNA helicase; Provisional
Probab=94.86 E-value=0.037 Score=58.50 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=47.7
Q ss_pred ceeeccceeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcch
Q 014228 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (428)
Q Consensus 208 e~L~TGikvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~E 269 (428)
.-+.||+.-+|.++- +.+|.-++|-|.||+|||+++..++.+.+..+..-++|...-+...+
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~ 246 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAES 246 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHH
Confidence 458899999999874 67888999999999999999999999876544444445555454443
No 330
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.84 E-value=0.023 Score=53.14 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.4
Q ss_pred ceeeccc-cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 214 ikvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-++++.. +.+.+|.++.|.||+|||||||..+++.-
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 3444433 46789999999999999999999887753
No 331
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.023 Score=54.13 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999887654
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.83 E-value=0.023 Score=49.43 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.4
Q ss_pred eEEECCCCCChhHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n 249 (428)
+++.|+||+||||++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999888754
No 333
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.82 E-value=0.024 Score=53.29 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999999987764
No 334
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.82 E-value=0.023 Score=54.48 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 335
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.81 E-value=0.1 Score=51.90 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=25.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhh
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
.+++.++|.||.|+||||++..++......
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999998876543
No 336
>PRK09087 hypothetical protein; Validated
Probab=94.81 E-value=0.067 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
...+.|+|++|+|||||++.+.++
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999999999977654
No 337
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.024 Score=52.90 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999999987654
No 338
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.81 E-value=0.023 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.78 E-value=0.31 Score=45.46 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=65.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeec-C-CcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG-E-RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giG-e-R~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
+-+.+++++|.||||.|.-++...+..-..+.++-.+. . ...|..- ++.+ + +..- .......+. + ++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~-l~~~---~-~~~~---~~g~g~~~~-~--~~ 74 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAA-FEPH---G-VEFQ---VMGTGFTWE-T--QN 74 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHH-HHhc---C-cEEE---ECCCCCeec-C--CC
Confidence 46778999999999999988877554323344433332 2 1233322 2222 1 1100 011111111 1 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHH-----HHHHHhHHhcCCCCC
Q 014228 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT-----QANSEVSALLGRIPS 356 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa-----~A~reis~llgr~p~ 356 (428)
+......+.-+...|+.... .|+.-+||+||+..-. .-...+..+-.||+.
T Consensus 75 ~~~~~~~~~~~~~~a~~~l~-~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~ 130 (173)
T TIGR00708 75 READTAIAKAAWQHAKEMLA-DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGH 130 (173)
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC
Confidence 34566668888888876665 6888899999996322 222445555566664
No 340
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.77 E-value=0.28 Score=45.06 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+|.-+.|.|.+|+||||++..+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999888765
No 341
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.025 Score=54.31 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 342
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.025 Score=53.13 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999877643
No 343
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.75 E-value=0.025 Score=53.81 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.1
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999877643
No 344
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.75 E-value=0.023 Score=53.39 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4688999999999999999999987754
No 345
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.026 Score=53.42 Aligned_cols=28 Identities=39% Similarity=0.549 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999987764
No 346
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.025 Score=54.55 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999877654
No 347
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.73 E-value=0.025 Score=53.74 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||++.|+-.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 348
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.025 Score=53.51 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999877643
No 349
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.70 E-value=0.024 Score=54.07 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46889999999999999999999877643
No 350
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.70 E-value=0.027 Score=52.99 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999877653
No 351
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.69 E-value=0.026 Score=54.02 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999999987764
No 352
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.69 E-value=0.026 Score=53.98 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999999987764
No 353
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.69 E-value=0.031 Score=50.05 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+..+.|.|++|+||||++..++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998764
No 354
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.69 E-value=0.027 Score=52.84 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877653
No 355
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.69 E-value=0.056 Score=49.30 Aligned_cols=30 Identities=30% Similarity=0.291 Sum_probs=26.1
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHH
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+..+|.-+.|.|++|+||||++..+++...
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999887764
No 356
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.66 E-value=0.03 Score=62.03 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.6
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|+||||||||++++.+++..
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999887643
No 357
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.65 E-value=0.028 Score=52.28 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.8
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 33356789999999999999999999877654
No 358
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.65 E-value=0.05 Score=56.94 Aligned_cols=56 Identities=29% Similarity=0.354 Sum_probs=43.6
Q ss_pred eeeccceeecccc-ccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeec
Q 014228 209 ILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (428)
Q Consensus 209 ~L~TGikvID~l~-pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giG 264 (428)
-+.||...+|.++ -+.+|+=++|-|.||+|||+++..++.+.+..+..-..|....
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4789999999998 4888999999999999999999999988763332223344443
No 359
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.65 E-value=0.028 Score=51.00 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999877643
No 360
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.64 E-value=0.028 Score=52.96 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 361
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.64 E-value=0.028 Score=53.03 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999877643
No 362
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.086 Score=52.58 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeec
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giG 264 (428)
..-.-+++|||||+|||-+|+..+|.. +.|.+--||
T Consensus 209 dppkgvllygppgtgktl~aravanrt-----dacfirvig 244 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIG 244 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehh
Confidence 334558999999999999998777653 455444455
No 363
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.63 E-value=0.029 Score=51.42 Aligned_cols=29 Identities=34% Similarity=0.614 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999887654
No 364
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.60 E-value=0.085 Score=53.47 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=34.0
Q ss_pred hhcccccceeeccceeeccccccCC-CceeEEECCCCCChhHHHHHHHHHH
Q 014228 201 VEQATEQQILVTGIKVVDLLAPYQR-GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 201 ler~~~qe~L~TGikvID~l~pigr-Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+++..||+... +.+-..+..++ .+-.+|.||.|+||+++|..+++..
T Consensus 3 f~~iiGq~~~~---~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 3 FANLIGQPLAI---ELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHhCCHHHHH---HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666553 34445555566 4889999999999999999988774
No 365
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.029 Score=53.41 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999877643
No 366
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.58 E-value=0.018 Score=62.34 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=40.3
Q ss_pred cCCCcchhcccccceeeccceeeccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 195 ~~~P~~ler~~~qe~L~TGikvID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.||..+++..+|++.....+ ..+-....+.++|+|++|||||++|+.+.+.
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~---~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALK---AALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHH---HHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999998764433 2333456789999999999999999877653
No 367
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.58 E-value=0.029 Score=54.74 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999877643
No 368
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.57 E-value=0.032 Score=51.00 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999877654
No 369
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.56 E-value=0.036 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~i 246 (428)
+.+.+|..+.|+||+|+|||||++.|
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999999755
No 370
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.55 E-value=0.03 Score=53.75 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+..|+.++|.|++|+|||||+..|+-.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877654
No 371
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.031 Score=51.06 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877653
No 372
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.031 Score=53.45 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999999877643
No 373
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.53 E-value=0.03 Score=52.89 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 5688999999999999999999987764
No 374
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.038 Score=58.19 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=61.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhhc--CcEEEEEeecCCcchHHHHHHHHHHccccccCcccCCCeEEEEEecCCCC
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~~--~~~~V~~giGeR~~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p 304 (428)
.++++.||.|+|||-|++-+++-..-.+ .|+.-..--|=-++++..++..|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~------------------------ 282 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQE------------------------ 282 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHH------------------------
Confidence 5899999999999999998876432111 01111111122223555556655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHHHHHhHHhcCCCCCCCCCCCChhHhHHHHHH
Q 014228 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373 (428)
Q Consensus 305 ~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A~reis~llgr~p~~~gyp~~l~~~l~~l~E 373 (428)
|+|-.. .-+.=++|+||+-+.+++---+... |=-+.+| +-..|-+|+|
T Consensus 283 --------------A~~nVe-kAQqGIVflDEvDKi~~~~~~i~~~--RDVsGEG----VQQaLLKllE 330 (564)
T KOG0745|consen 283 --------------AEYNVE-KAQQGIVFLDEVDKITKKAESIHTS--RDVSGEG----VQQALLKLLE 330 (564)
T ss_pred --------------ccCCHH-HHhcCeEEEehhhhhcccCcccccc--ccccchh----HHHHHHHHhc
Confidence 555544 4556699999999998665544433 4445555 3445667776
No 375
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.50 E-value=0.031 Score=51.50 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877654
No 376
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.50 E-value=0.031 Score=53.04 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999999999877643
No 377
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.031 Score=53.67 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5788999999999999999999987764
No 378
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.036 Score=51.98 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.8
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|.-+.+..|+.++|.|+.|+|||||+..|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55578899999999999999999999877643
No 379
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.49 E-value=0.032 Score=52.12 Aligned_cols=30 Identities=23% Similarity=0.514 Sum_probs=26.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 578899999999999999999998876543
No 380
>PRK03839 putative kinase; Provisional
Probab=94.49 E-value=0.032 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.2
Q ss_pred eeEEECCCCCChhHHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
++.|+|+||+||||++..+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987643
No 381
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.49 E-value=0.13 Score=55.93 Aligned_cols=33 Identities=45% Similarity=0.748 Sum_probs=27.5
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHHHHhhc
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~ 254 (428)
++.+|+.++|.|+.|+||||++..|+......+
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~ 378 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH 378 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 467899999999999999999988887654433
No 382
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.035 Score=56.95 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.9
Q ss_pred eccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 217 ID~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+|.=+.+.+|+.++|+|++|+|||||++.|+-
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46667789999999999999999999987764
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.48 E-value=0.53 Score=44.42 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=21.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHHhh
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVAKA 253 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~~~ 253 (428)
+-+.|.||.|+||||.+.-++......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 357899999999999888888776544
No 384
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.48 E-value=0.032 Score=52.62 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 385
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.031 Score=53.36 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=26.8
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
|.-+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456788999999999999999999987764
No 386
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.47 E-value=0.031 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.6
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|+|+||+||||++..++..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888764
No 387
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.46 E-value=0.21 Score=46.69 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+|..+.|.|.+|+|||||+..+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999887754
No 388
>PF13245 AAA_19: Part of AAA domain
Probab=94.45 E-value=0.063 Score=43.09 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=18.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.+-..|.||||+|||+++...+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455699999999977766666544
No 389
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.032 Score=53.89 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999987764
No 390
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.45 E-value=0.032 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 391
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.45 E-value=0.032 Score=53.31 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 392
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.44 E-value=0.033 Score=52.12 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999887643
No 393
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.42 E-value=0.033 Score=54.15 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999877643
No 394
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.41 E-value=0.033 Score=53.36 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 395
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.40 E-value=0.035 Score=51.01 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 396
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.40 E-value=0.031 Score=54.93 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..|..++|.|+||||||+|+..+++..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999888643
No 397
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.40 E-value=0.038 Score=46.37 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=19.6
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
|+.++|++|+|||||++.++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999888754
No 398
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.39 E-value=0.067 Score=53.01 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=38.2
Q ss_pred cceeeccc-cccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcchHHHHHH
Q 014228 213 GIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR 275 (428)
Q Consensus 213 GikvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~Ev~dl~~ 275 (428)
+-+++|.+ +.+..|.-+.|+||+||||||++. |||..-+...+-+.+-+..-+.....++.+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLk-MINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLK-MINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHH-HHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 34555554 488999999999999999999996 555543332233333333333333444443
No 399
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.39 E-value=0.036 Score=50.47 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+..+|.|++|+|||||++.|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999877654
No 400
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.39 E-value=0.033 Score=53.16 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999887754
No 401
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.034 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57889999999999999999999877643
No 402
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.37 E-value=0.034 Score=53.80 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 21 FSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 403
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.034 Score=53.51 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.0
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999877643
No 404
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.36 E-value=0.035 Score=53.07 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999987764
No 405
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.36 E-value=0.032 Score=50.77 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|+.++|.||+|+|||||+..|+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 577899999999999999888753
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.35 E-value=0.32 Score=45.87 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.1
Q ss_pred cCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+..|.-++|.||+|+|||||++.|.-.+
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4446888999999999999998886544
No 407
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.34 E-value=0.029 Score=50.11 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.2
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
++..+.+..+.-+++|+|++|+|||||+..+..
T Consensus 4 ~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 4 LLRKLRKSSEEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred HHHHhhccCCccEEEEEccCCCCHHHHHHHHhc
Confidence 455566777788999999999999999987754
No 408
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.34 E-value=0.036 Score=52.57 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|+.|+|||||+..|+-.
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 409
>PRK10908 cell division protein FtsE; Provisional
Probab=94.34 E-value=0.036 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999987764
No 410
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.34 E-value=0.035 Score=53.54 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999987763
No 411
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.34 E-value=0.035 Score=52.64 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999877754
No 412
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.33 E-value=0.037 Score=52.74 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56889999999999999999999877653
No 413
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.33 E-value=0.12 Score=52.61 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=22.6
Q ss_pred cCCCc-eeEEECCCCCChhHHHHHHHHHH
Q 014228 223 YQRGG-KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 223 igrGq-ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.++.. -++|.|++|+||+++|..+++..
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 44444 48899999999999999888764
No 414
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.32 E-value=0.11 Score=50.94 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=23.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
-.++++||..|+|||+|...+.+..+.
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHHHHHh
Confidence 368999999999999999988877643
No 415
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.32 E-value=0.035 Score=53.18 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||++.|+-.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999887743
No 416
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.32 E-value=0.036 Score=53.04 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 417
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.32 E-value=0.039 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
|+.++|.|++|+|||||+..|+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999887653
No 418
>PRK14532 adenylate kinase; Provisional
Probab=94.32 E-value=0.037 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred eeEEECCCCCChhHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++|+|+||+||||++..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 419
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.31 E-value=0.035 Score=53.07 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=26.2
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999877754
No 420
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.035 Score=53.62 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999999888643
No 421
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.30 E-value=0.036 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999877643
No 422
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.29 E-value=0.037 Score=51.78 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999877643
No 423
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.29 E-value=0.035 Score=53.64 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999877654
No 424
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.037 Score=53.54 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+..|+.++|.|++|+|||||+..|+-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999887654
No 425
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.27 E-value=0.035 Score=57.05 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|+||+|+|||||++.|+
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 578899999999999999999998776
No 426
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.038 Score=52.86 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.6
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
-+.+..|+.+.+.||+|||||||+..++
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 3568999999999999999999997665
No 427
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.26 E-value=0.036 Score=53.88 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=26.2
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999877654
No 428
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.26 E-value=0.044 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+...++|.|+||+||||++..++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999888754
No 429
>PRK06217 hypothetical protein; Validated
Probab=94.23 E-value=0.039 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.5
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.+|.|.|.+|+|||||+..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998764
No 430
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.23 E-value=0.039 Score=52.28 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 431
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.22 E-value=0.039 Score=52.07 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999877643
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.042 Score=50.11 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999999999877654
No 433
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.038 Score=53.71 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999999999877653
No 434
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.21 E-value=0.14 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=19.5
Q ss_pred eeEEECCCCCChhHHHHHHHHHH
Q 014228 228 KIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 228 ri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-+.|.||.+|||||++..++.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~ 61 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL 61 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC
Confidence 78999999999999997666543
No 435
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.20 E-value=0.035 Score=54.24 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5778999999999999999999987764
No 436
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.19 E-value=0.041 Score=53.96 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.1
Q ss_pred eeccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 216 vID~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+++.+..+.+|+.++|.|++|+|||||+..|+.-
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444789999999999999999999877644
No 437
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.035 Score=52.08 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 46789999999999999999999877643
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.19 E-value=0.26 Score=44.17 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.8
Q ss_pred eEEECCCCCChhHHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
+.|.|.+|+|||||++.++....
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999887653
No 439
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.19 E-value=0.04 Score=53.16 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=26.0
Q ss_pred cccccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 219 ~l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
.-+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 22 INLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 335788999999999999999999987764
No 440
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.17 E-value=0.04 Score=53.92 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999988865
No 441
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.16 E-value=0.047 Score=52.92 Aligned_cols=26 Identities=38% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
...|+.|+|+||+||||++..++...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44779999999999999999887653
No 442
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.15 E-value=0.041 Score=51.52 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|...+|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999877643
No 443
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.15 E-value=0.039 Score=53.80 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 444
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.14 E-value=0.043 Score=51.05 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHH
Q 014228 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 224 grGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+|+-++|.|++|+|||||+..++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999888764
No 445
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.14 E-value=0.043 Score=51.41 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999877654
No 446
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.13 E-value=0.038 Score=56.85 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.8
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+.+.+|+.++|+||+|+|||||++.|+-
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 35788999999999999999999987764
No 447
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.13 E-value=0.043 Score=51.11 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|+.|+|||||+..|+-.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 448
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.12 E-value=0.042 Score=52.30 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=24.6
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.+|+.++|.|++|+|||||+..|+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999887754
No 449
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.12 E-value=0.061 Score=53.22 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=29.1
Q ss_pred eeeccccc-cCCCceeEEECCCCCChhHHHHHHHHHHHh
Q 014228 215 KVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 215 kvID~l~p-igrGqri~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
..++.+.| .++..++||-|+||+|||||.-.++....+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 34555555 478899999999999999999999887654
No 450
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.12 E-value=0.041 Score=51.29 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999877653
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.11 E-value=0.042 Score=50.82 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHH
Q 014228 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 225 rGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.|..++|.||+|+|||||+..++..
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3678999999999999999988654
No 452
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.11 E-value=0.041 Score=52.85 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|+.|+|||||+..|+-.
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999887643
No 453
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.11 E-value=0.042 Score=52.95 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999999999877643
No 454
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.11 E-value=0.042 Score=52.73 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999887643
No 455
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.042 Score=52.36 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999877644
No 456
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.042 Score=53.16 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999887654
No 457
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.039 Score=53.96 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 57889999999999999999999877643
No 458
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.041 Score=51.64 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+| .++|.|++|+|||||++.|+.
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 456678 999999999999999987764
No 459
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.042 Score=53.01 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999987753
No 460
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.08 E-value=0.042 Score=53.31 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|.-.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999999877643
No 461
>PRK08233 hypothetical protein; Provisional
Probab=94.08 E-value=0.046 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHH
Q 014228 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 226 Gqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.-++|.|++|+|||||+..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567889999999999998887653
No 462
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.08 E-value=0.042 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999877643
No 463
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.08 E-value=0.044 Score=51.92 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 464
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.025 Score=56.94 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~~ 251 (428)
.-++++|+||+|||-||...+|+..
T Consensus 220 KGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred CeeEEeCCCCCchhHHHHHHhcccc
Confidence 3478999999999999998887654
No 465
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.06 E-value=0.02 Score=50.90 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=17.7
Q ss_pred eEEECCCCCChhHHHHHHHHHHHh
Q 014228 229 IGLFGGAGVGKTVLIMELINNVAK 252 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~~~ 252 (428)
++|+|+||+|||+++..+++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 689999999999999999887543
No 466
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.041 Score=53.18 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877644
No 467
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.044 Score=53.71 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=25.9
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 57889999999999999999999887654
No 468
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.04 E-value=0.042 Score=53.88 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.1
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
-+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999877643
No 469
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.04 E-value=0.045 Score=51.25 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=25.8
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999999877654
No 470
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.04 E-value=0.042 Score=56.51 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=25.5
Q ss_pred ccccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 220 l~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
-+.+..|+.++|+||+|+|||||+..|+-
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35678999999999999999999987764
No 471
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.16 Score=55.10 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=69.2
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEE-----------------EEeecCCc-------------
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-----------------FAGVGERT------------- 267 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V-----------------~~giGeR~------------- 267 (428)
|.-+.+.+|+++.|+|++|+|||||+..+.--. +...+-.- ..-|++++
T Consensus 339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l 417 (559)
T COG4988 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILL 417 (559)
T ss_pred CceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhc
Confidence 334578899999999999999999997665321 11100000 01112211
Q ss_pred ----chHHHHHHHHHHccccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCchhHHHH
Q 014228 268 ----REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (428)
Q Consensus 268 ----~Ev~dl~~el~e~~~~~~~~~~~~~~tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~Gk~VLL~iDditRfa~A 343 (428)
.+-.+++.-+.+.++.+.-+....=.+.+=-+...-|.+++-|.+. |+-|- .+.-++++||-|-+-++
T Consensus 418 ~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaL-----ARAll---~~~~l~llDEpTA~LD~ 489 (559)
T COG4988 418 ARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLAL-----ARALL---SPASLLLLDEPTAHLDA 489 (559)
T ss_pred cCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHH-----HHHhc---CCCCEEEecCCccCCCH
Confidence 1123333333333322211100111355555667788998888754 66654 34678999999998888
Q ss_pred HHHh
Q 014228 344 NSEV 347 (428)
Q Consensus 344 ~rei 347 (428)
+.|-
T Consensus 490 etE~ 493 (559)
T COG4988 490 ETEQ 493 (559)
T ss_pred hHHH
Confidence 8764
No 472
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.03 E-value=0.041 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|.|++|+||||++..+++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999888653
No 473
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.02 E-value=0.043 Score=54.89 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999987764
No 474
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.01 E-value=0.044 Score=53.69 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999999999877643
No 475
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.01 E-value=0.044 Score=51.64 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=27.4
Q ss_pred ccccccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 218 D~l~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
|.-+.+..|+.++|.|++|+|||||+..|+-.
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999999888654
No 476
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.00 E-value=0.045 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.1
Q ss_pred eEEECCCCCChhHHHHHHHHHH
Q 014228 229 IGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 229 i~IfG~~G~GKTtLa~~ii~n~ 250 (428)
++|+|+||+||||++..++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999887643
No 477
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.044 Score=55.67 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.7
Q ss_pred eeeccc-cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 215 KVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 215 kvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+++.+ +.+.+|+.++|.|++|+|||||++.|+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 344444 48899999999999999999999887654
No 478
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.99 E-value=0.041 Score=53.05 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4678999999999999999999987764
No 479
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.99 E-value=0.046 Score=53.19 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.2
Q ss_pred ccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 222 pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
.+.+|+.++|+|++|+|||||+..|+..
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999877643
No 480
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.045 Score=53.77 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999999877644
No 481
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.98 E-value=0.045 Score=54.71 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|+.|+|||||+..|+.
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999999987764
No 482
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.98 E-value=0.043 Score=56.41 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 23 l~i~~Ge~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999988774
No 483
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.045 Score=53.29 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999887643
No 484
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.046 Score=52.70 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=25.4
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999877643
No 485
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.98 E-value=0.048 Score=51.47 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 57889999999999999999999877643
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.96 E-value=0.047 Score=48.63 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=25.0
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+..|+..+|.|++|+|||||+..++..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999877543
No 487
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.96 E-value=0.045 Score=53.49 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=25.7
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 32 LSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999877643
No 488
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.95 E-value=0.044 Score=54.35 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999877643
No 489
>PRK02496 adk adenylate kinase; Provisional
Probab=93.95 E-value=0.049 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHH
Q 014228 227 GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 227 qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
.|++|+|+||+||||++..++...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887643
No 490
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.048 Score=52.59 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=25.3
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 24 LDIPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5678999999999999999999988864
No 491
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.94 E-value=0.048 Score=53.43 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=29.5
Q ss_pred ceeeccc-cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 214 ikvID~l-~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
-.++|.+ +.+-+|.-.+|.||+|+|||||++.|+--.
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 3455554 378899999999999999999998877443
No 492
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.93 E-value=0.045 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.5
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+-.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877643
No 493
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.92 E-value=0.046 Score=51.94 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=26.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
+.+.+|+.++|.|++|+|||||+..|....
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 468899999999999999999998776543
No 494
>PHA02542 41 41 helicase; Provisional
Probab=93.92 E-value=0.071 Score=57.08 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=45.5
Q ss_pred ceeeccceeeccccc--cCCCceeEEECCCCCChhHHHHHHHHHHHhhcCcEEEEEeecCCcch
Q 014228 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (428)
Q Consensus 208 e~L~TGikvID~l~p--igrGqri~IfG~~G~GKTtLa~~ii~n~~~~~~~~~V~~giGeR~~E 269 (428)
.-+.||+.-+|.++. +.+|+=++|-|.||+|||+++..++.+.++. +.-.+|...-+...+
T Consensus 170 ~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~q 232 (473)
T PHA02542 170 NKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEV 232 (473)
T ss_pred CccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHH
Confidence 457899999999983 7788889999999999999999999887643 222234444444333
No 495
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.044 Score=53.75 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.1
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4678999999999999999999987764
No 496
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.91 E-value=0.23 Score=45.25 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=24.7
Q ss_pred ccccccCCC-ceeEEECCCCCChhHHHHHHHHHH
Q 014228 218 DLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNV 250 (428)
Q Consensus 218 D~l~pigrG-qri~IfG~~G~GKTtLa~~ii~n~ 250 (428)
..++..++- +.++|.|+.|+||+++|..+++..
T Consensus 10 ~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 10 KNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444 557999999999999999998764
No 497
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.047 Score=50.79 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii 247 (428)
+.+.+|+.++|.|++|+|||||+..|+
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999999998776
No 498
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.91 E-value=0.048 Score=52.95 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.6
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~n 249 (428)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999877654
No 499
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.90 E-value=0.047 Score=53.59 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+.+|+.++|.|++|+|||||+..|+-
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 33 LSLKSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999987763
No 500
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.89 E-value=0.048 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.2
Q ss_pred cccCCCceeEEECCCCCChhHHHHHHHH
Q 014228 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (428)
Q Consensus 221 ~pigrGqri~IfG~~G~GKTtLa~~ii~ 248 (428)
+.+..|+.++|.|++|+|||||+..|+-
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999999987764
Done!