RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014228
(428 letters)
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 687 bits (1776), Expect = 0.0
Identities = 250/336 (74%), Positives = 282/336 (83%), Gaps = 10/336 (2%)
Query: 85 GAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDG 142
G++ QVIG VVDV F G LP I ALEV +LVLEVAQH+G+GVVRTIAM
Sbjct: 1 MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60
Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
T+GLVRG V++TG+PI+VPVG+ TLGRI NV+GEPIDEKG + E PIHR+AP+F E
Sbjct: 61 TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120
Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
+T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SVFAG
Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180
Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
VGERTREGNDLY EM ESGV+ K ALV+GQMNEPPGAR RV LTGLT+AE+F
Sbjct: 181 VGERTREGNDLYHEMKESGVLD--------KTALVFGQMNEPPGARLRVALTGLTMAEYF 232
Query: 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGS 382
RD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TKKGS
Sbjct: 233 RDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGS 292
Query: 383 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
ITSVQA+YVPADDLTDPAPATTFAHLDATTVLSRQ+
Sbjct: 293 ITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQI 328
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 622 bits (1607), Expect = 0.0
Identities = 251/339 (74%), Positives = 282/339 (83%), Gaps = 13/339 (3%)
Query: 85 GAIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVR-LVLEVAQHMGEGVVRTIAMD 141
G+V QVIG VVDV F E LP I ALEV + + LVLEVAQH+G+ VVRTIAM
Sbjct: 1 MNKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMG 60
Query: 142 GTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPA 199
T+GLVRG V++TG PI+VPVG+ TLGRI NV+GEPIDEKG +K E PIHR+AP+
Sbjct: 61 STDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPS 120
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
F E +T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SV
Sbjct: 121 FEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSV 180
Query: 260 FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319
FAGVGERTREGNDLY EM ESGV+ K ALV+GQMNEPPGAR RV LTGLT+A
Sbjct: 181 FAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMA 232
Query: 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK 379
E+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TK
Sbjct: 233 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK 292
Query: 380 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
KGSITSVQA+YVPADDLTDPAPATTFAHLDATTVLSRQ+
Sbjct: 293 KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQI 331
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 583 bits (1506), Expect = 0.0
Identities = 246/335 (73%), Positives = 280/335 (83%), Gaps = 10/335 (2%)
Query: 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGT 143
G+V QVIG VVDV F++G LP I AL+V L LEVAQH+G+ VRTIAM T
Sbjct: 1 TKGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGST 60
Query: 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQ 203
+GLVRG V++TG+PI+VPVG+ TLGRI NV+GEPIDEKG + + PIHR+AP+F EQ
Sbjct: 61 DGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQ 120
Query: 204 ATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263
+T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SVFAGV
Sbjct: 121 STKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGV 180
Query: 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323
GERTREGNDLY EM ESGVI K ALVYGQMNEPPGAR RV LTGLT+AE+FR
Sbjct: 181 GERTREGNDLYHEMKESGVID--------KTALVYGQMNEPPGARMRVALTGLTMAEYFR 232
Query: 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSI 383
D +GQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TK GSI
Sbjct: 233 DEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKTGSI 292
Query: 384 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
TSVQA+YVPADDLTDPAPATTFAHLDATTVLSR++
Sbjct: 293 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKI 327
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 571 bits (1475), Expect = 0.0
Identities = 231/336 (68%), Positives = 267/336 (79%), Gaps = 7/336 (2%)
Query: 87 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAM 140
+G++ Q+IG V+DV F G +P I AL V + + EV Q +G VR +AM
Sbjct: 16 LGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAM 75
Query: 141 DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
T+GL+RG V++TG+P++VPVG TLGRI NV+GEP+D G + T PIHR APAF
Sbjct: 76 SATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAF 135
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
++ T+ I TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG SVF
Sbjct: 136 IQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVF 195
Query: 261 AGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320
GVGERTREGNDLY EM ESGVI A+SK ALVYGQMNEPPGAR RVGLT LT+AE
Sbjct: 196 GGVGERTREGNDLYMEMKESGVINE-QNIAESKVALVYGQMNEPPGARMRVGLTALTMAE 254
Query: 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK 380
+FRD QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G LQERIT+TK+
Sbjct: 255 YFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKE 314
Query: 381 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 416
GSITS+QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 315 GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSR 350
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 529 bits (1366), Expect = 0.0
Identities = 213/261 (81%), Positives = 234/261 (89%), Gaps = 8/261 (3%)
Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
PI+VPVG TLGRI NV+GEPIDE+G +KT+ PIHREAP FVEQ+T+ +IL TGIKV+
Sbjct: 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVI 60
Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277
DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAHGG+SVFAGVGERTREGNDLY EM
Sbjct: 61 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEM 120
Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
ESGV+ SK ALVYGQMNEPPGARARV LTGLT+AE+FRD EGQDVLLFIDNI
Sbjct: 121 KESGVL--------SKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNI 172
Query: 338 FRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397
FRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TKKGSITSVQA+YVPADDLT
Sbjct: 173 FRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLT 232
Query: 398 DPAPATTFAHLDATTVLSRQV 418
DPAPATTFAHLDATTVLSR +
Sbjct: 233 DPAPATTFAHLDATTVLSRAI 253
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 511 bits (1319), Expect = 0.0
Identities = 206/331 (62%), Positives = 242/331 (73%), Gaps = 9/331 (2%)
Query: 87 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
IG++ ++ G VVDV F+EG LPPI AL V D +LEV QH+ E VR IA+ T G
Sbjct: 3 IGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSG 62
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
L RG V NTG PI VPVG LGR+++V+GEP+D L E PIH P EQ T
Sbjct: 63 LARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDT 122
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
+IL TGIKV+DLL P +GGK GLFGGAGVGKTVL+MELI N++K H G SVFAGVGE
Sbjct: 123 STEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGE 182
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
R+REG++LY EM ESGV+ K +VYGQMNEPPGAR RV LTGLT+AE+ RD
Sbjct: 183 RSREGHELYHEMKESGVLD--------KTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDE 234
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITS 385
E +DVLLFIDNIFRF QA SEVS LLGR+PS VGYQPTLA+++ LQERI +TK GSITS
Sbjct: 235 EKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTKNGSITS 294
Query: 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSR 416
+QA+YVPADDLTDPA F+HLD+T VLSR
Sbjct: 295 IQAVYVPADDLTDPAAVAIFSHLDSTVVLSR 325
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 393 bits (1012), Expect = e-134
Identities = 173/330 (52%), Positives = 224/330 (67%), Gaps = 9/330 (2%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G V V G++VDVRFD LP I + L +V+EV + VR IA+ T+GL
Sbjct: 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREG-EVVVEVLSQLDAHHVRGIALTPTQGLA 59
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RG V ++G P+ PVG+ TL R+ +V G ID + K + +H+ P ++++
Sbjct: 60 RGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
++ TGIK +D+L P +RGGK GLFGGAGVGKTVL+ E+I+N+ H G S+F G+GER
Sbjct: 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERC 179
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REG +LYREM E+GV+ +V+GQMNEPPGAR RVG T LT+AE+FRD E
Sbjct: 180 REGEELYREMKEAGVL--------DNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEK 231
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLL IDNIFRF QA SEVS LLG++PS +GYQPTL T+L L+ERI TT G+ITS+Q
Sbjct: 232 QDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAITSIQ 291
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
A+YVPADD TDPA TF+HL A+ VLSR+
Sbjct: 292 AVYVPADDFTDPAAVHTFSHLSASLVLSRK 321
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 220 bits (562), Expect = 5e-70
Identities = 82/207 (39%), Positives = 117/207 (56%), Gaps = 12/207 (5%)
Query: 212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN 271
TGI+ +DLL P +G +IG+FGG+G GKTVL+ + N V+ +GER RE
Sbjct: 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA--DVVEVYVLIGERGREVA 58
Query: 272 DLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVL 331
+ E++ G +K + +V +EPP R T LT+AE+FRD +G+DVL
Sbjct: 59 EFIEELLGEGALK--------RTVVVAATSDEPPAERYLAPYTALTIAEYFRD-QGKDVL 109
Query: 332 LFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIY 390
L +D++ RF +A E+S LLG P GY +L +DL L ER + GSIT++ +
Sbjct: 110 LLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVEGGGSITALPTVL 169
Query: 391 VPADDLTDPAPATTFAHLDATTVLSRQ 417
VP D+TDP P T + D VLSR+
Sbjct: 170 VPGGDITDPIPDNTISITDGQIVLSRE 196
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 183 bits (467), Expect = 3e-53
Identities = 94/276 (34%), Positives = 145/276 (52%), Gaps = 12/276 (4%)
Query: 142 GTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFV 201
EG+ G V+ TG P++VPVG LGR+++ +G P+D G P+ P +
Sbjct: 79 PVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPL 138
Query: 202 EQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
++ ++ L TG++ +D L +G +IG+F G+GVGK+ L + +I +A +V A
Sbjct: 139 KRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTL-LGMIARNTEAD--VNVIA 195
Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
+GER RE RE IE LG++ + +V +E R + T T+AE+
Sbjct: 196 LIGERGRE----VREFIEK---DLGEEGL-KRSVVVVATSDESALMRLKAAFTATTIAEY 247
Query: 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKG 381
FRD +G+ VLL +D++ RF A E+ G P+ GY P++ ++L L ER KG
Sbjct: 248 FRD-QGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKG 306
Query: 382 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
SIT+ + V DD+ DP + LD VLSR
Sbjct: 307 SITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRA 342
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 165 bits (420), Expect = 1e-47
Identities = 93/260 (35%), Positives = 140/260 (53%), Gaps = 12/260 (4%)
Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
P++VPVG LGR+++ GEP+D KG L E P+ R P +++ ++L TG++ +
Sbjct: 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAI 60
Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277
D L +G ++G+F G+GVGK+ L + +I A +V A +GER RE RE
Sbjct: 61 DGLLTVGKGQRLGIFAGSGVGKSTL-LGMIARGTTAD--VNVIALIGERGRE----VREF 113
Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
IE + + G K + +V +E P R + T +AE+FRD +G+DVLL +D++
Sbjct: 114 IEKDLGEEGLK----RSVVVVATSDESPLLRVKAAYTATAIAEYFRD-QGKDVLLLMDSL 168
Query: 338 FRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397
RF A E+ G P+ GY P++ L L ER + KGSIT+ + V DDL
Sbjct: 169 TRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN 228
Query: 398 DPAPATTFAHLDATTVLSRQ 417
+P + LD VLSR
Sbjct: 229 EPIADAVRSILDGHIVLSRA 248
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 163 bits (414), Expect = 6e-46
Identities = 96/286 (33%), Positives = 153/286 (53%), Gaps = 12/286 (4%)
Query: 132 EGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYL 191
E V + + EG+ G V+ TG P+ + VG+ LGR+++ +G P+D +G + E
Sbjct: 43 EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPY 102
Query: 192 PIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251
P+ P +++ + L TGIK +D L +G ++G+F G+GVGK+ L + +I A
Sbjct: 103 PLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIARNA 161
Query: 252 KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARV 311
KA +V A +GER RE R+ IE + + G K + +V ++P R +
Sbjct: 162 KA--DINVIALIGERGRE----VRDFIEKDLGEEGLK----RSVVVVATSDQPALMRLKA 211
Query: 312 GLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGL 371
T +AE+FRD +G+DVLL +D++ RF A E+ +G P+ GY P++ + L L
Sbjct: 212 AFTATAIAEYFRD-QGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKL 270
Query: 372 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
ER ++KGSIT + V DD+ +P LD VLSR+
Sbjct: 271 LERSGNSQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRE 316
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 162 bits (413), Expect = 2e-45
Identities = 101/297 (34%), Positives = 156/297 (52%), Gaps = 14/297 (4%)
Query: 121 RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
RLV EV GE V + EG+ G +VL TG +++ VG LGR+++ +G+PID
Sbjct: 58 RLVAEVVGFNGEFVFLM-PYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPID 116
Query: 181 EKGD-LKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
KG L + +++A ++IL TG++ +D L +G +IG+F G+GVGK
Sbjct: 117 GKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGK 176
Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
+ L + +I +A +V A +GER RE RE IE LG ++ + +V
Sbjct: 177 STL-LGMIARNTEAD--VNVIALIGERGRE----VREFIEH---DLG-EEGLKRSVVVVA 225
Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVG 359
++ P R + +AE+FRD +G+DVLL +D++ RF A E+ G P+ G
Sbjct: 226 TSDQSPLLRLKGAYVATAIAEYFRD-QGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKG 284
Query: 360 YQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 416
Y P++ + L L ER + KGSIT+ + V DD+ +P + LD VLSR
Sbjct: 285 YTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSR 341
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 158 bits (401), Expect = 5e-44
Identities = 110/338 (32%), Positives = 163/338 (48%), Gaps = 23/338 (6%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVR----LVLEVAQHMGEGVVRTIAMDGT 143
G+V V G +++VR GL + + R ++ EV G+ V+ + +
Sbjct: 1 GRVTAVTGLLIEVR---GLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVL-LMPFEPL 56
Query: 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKT-EHYLPIHREAPAFVE 202
EG+ G V P+ V LGR++N +GEPID KG L E P+ P +
Sbjct: 57 EGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMS 116
Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
+A + L TG++V+D P RG ++G+F G+GVGK+ L+ L N V A
Sbjct: 117 RARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARN---TDADVVVIAL 173
Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
VGER RE RE +E LG++ + +V +E P R + T +AE+F
Sbjct: 174 VGERGRE----VREFLED---DLGEEGL-KRSVVVVATSDESPLMRRQAAYTATAIAEYF 225
Query: 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKK 380
RD +G+DVLL +D++ RF A E+ G P A GY P++ ++L L ER K
Sbjct: 226 RD-QGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGK 284
Query: 381 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
GSIT + + V DD +P LD VL R +
Sbjct: 285 GSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAI 322
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 156 bits (397), Expect = 2e-43
Identities = 93/274 (33%), Positives = 141/274 (51%), Gaps = 14/274 (5%)
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPAFVE 202
G+ G V+ TG P+++ VG LGR+++ G P+D KG+L P+ + P +
Sbjct: 62 GISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMS 121
Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
+ Q L TG++ +D L G +IG+F GAGVGK+ L+ + A A +V A
Sbjct: 122 RQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG-ASAD--VNVIAL 178
Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
+GER RE RE IE ++ + LV + P R + T +AE+F
Sbjct: 179 IGERGRE----VREFIE----HHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYF 230
Query: 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGS 382
RD +G+ VLL +D++ RF +A E+ G P+ GY P++ + L L ER +KGS
Sbjct: 231 RD-QGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGS 289
Query: 383 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 416
IT++ + V DD+ DP + LD VLSR
Sbjct: 290 ITALYTVLVEGDDMNDPIADEVRSILDGHIVLSR 323
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 156 bits (396), Expect = 3e-43
Identities = 94/286 (32%), Positives = 147/286 (51%), Gaps = 16/286 (5%)
Query: 136 RTIAM--DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPI 193
R + M + EGL G RV P+ +PVG LGR+++ +G P+D KG L +P+
Sbjct: 45 RVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPL 104
Query: 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
+ +++A + L G++ ++ L RG ++G+F G+GVGK+ L + ++ +A
Sbjct: 105 YAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMARYTEA 163
Query: 254 HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
V +GER RE +E IE LG++ ++ +V +E P R R
Sbjct: 164 D--VVVVGLIGERGRE----VKEFIED---ILGEEGL-ARSVVVAATADESPLMRLRAAF 213
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+AE+FRD +G+DVLL +D++ RF A E++ +G P+ GY P++ L L E
Sbjct: 214 YATAIAEYFRD-QGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVE 272
Query: 374 R--ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
R KGSIT+ + V DD DP A LD VLSR+
Sbjct: 273 RAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRE 318
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 143 bits (363), Expect = 2e-38
Identities = 113/339 (33%), Positives = 172/339 (50%), Gaps = 29/339 (8%)
Query: 88 GQVCQVIG----AVVD-VRFDEGLPPILTALEVVDHSVRLVLEV---AQHMGEGVVRTIA 139
G+V QV G AVV VR E L L D+S+ L EV AQH
Sbjct: 25 GRVTQVTGTILKAVVPGVRIGE-----LCYLRNPDNSLSLQAEVIGFAQH----QALLTP 75
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+ G+ V TG+ V VG LGR+++ +G+P D + + P++ +APA
Sbjct: 76 LGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPA 135
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
+ + + L G++V+D L G ++G+F AG GK+ L+ LI + A +V
Sbjct: 136 PMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS---AEVDVTV 192
Query: 260 FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319
A +GER RE RE IES + + G ++A LV + P RA+ G ++A
Sbjct: 193 LALIGERGRE----VREFIESDLGEEGLRKA----VLVVATSDRPSMERAKAGFVATSIA 244
Query: 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK 379
E+FRD +G+ VLL +D++ RF +A E+ G P+ GY P++ L L ER +
Sbjct: 245 EYFRD-QGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSD 303
Query: 380 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
KGSIT++ + V DD+T+P T + LD +LSR++
Sbjct: 304 KGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKL 342
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 142 bits (359), Expect = 6e-38
Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 22/307 (7%)
Query: 120 VRLVLEVAQHMGEGVVRTIAMDG--------TEGLVRGQRVLNTGSPITVPVGRVTLGRI 171
V++ G+V I + EG G +V + + +PVGR LGR+
Sbjct: 43 VKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRV 102
Query: 172 MNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231
++ +G PID KG + E Y PI + A +++ ++ G+K +D L +G K+G+
Sbjct: 103 VDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGI 162
Query: 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291
F G+GVGK+ L M +I A V A +GER RE E IE LG +
Sbjct: 163 FAGSGVGKSTL-MGMIVKGCLAP--IKVVALIGERGRE----IPEFIEK---NLGGDLEN 212
Query: 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALL 351
+V ++ P R ++VAE+F++ +G DVL +D++ RF A E+ L
Sbjct: 213 --TVIVVATSDDSPLMRKYGAFCAMSVAEYFKN-QGLDVLFIMDSVTRFAMAQREIGLAL 269
Query: 352 GRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
G P++ GY P++ + L L ER + KGSIT+ + V DD++DP + + LD
Sbjct: 270 GEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDG 329
Query: 411 TTVLSRQ 417
VLSR+
Sbjct: 330 HIVLSRE 336
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 141 bits (358), Expect = 1e-37
Identities = 93/255 (36%), Positives = 129/255 (50%), Gaps = 20/255 (7%)
Query: 169 GRIMNVIGEPIDEKGDLKT-EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 227
GR++N +GEPID G L + I AP + +A + L TG++V+D+ P G
Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFS--VFAGVGERTREGNDLYREMIESGVIKL 285
+IG+F G+GVGK+ L+ L A+A F V A VGER RE RE +E L
Sbjct: 167 RIGIFAGSGVGKSTLLAML----ARAD-AFDTVVIALVGERGRE----VREFLED---TL 214
Query: 286 GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS 345
D K V +E P R LT +AE+FRD G++VLL +D++ RF A
Sbjct: 215 ADNL--KKAVAVVATSDESPMMRRLAPLTATAIAEYFRDR-GENVLLIVDSVTRFAHAAR 271
Query: 346 EVSALLGRIPSAVGYQPTLATDLGGLQERI--TTTKKGSITSVQAIYVPADDLTDPAPAT 403
EV+ G P A GY P++ ++L L ER GSIT + ++ V DD DP +
Sbjct: 272 EVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADS 331
Query: 404 TFAHLDATTVLSRQV 418
LD VL R +
Sbjct: 332 IRGTLDGHIVLDRAI 346
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 136 bits (343), Expect = 1e-35
Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 13/278 (4%)
Query: 141 DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
++GL GQ V G V VG GRI++ +G PID G T + + P+
Sbjct: 79 ASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSP 137
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
+ + +Q+L TGI+ +D + G +IG+F AGVGK+ L+ L A + V
Sbjct: 138 LTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGML---CADSAADVMVL 194
Query: 261 AGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320
A +GER RE RE +E + +A ++ +V + P R + T T+AE
Sbjct: 195 ALIGERGRE----VREFLEQVL----TPEARARTVVVVATSDRPALERLKGLSTATTIAE 246
Query: 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK 380
+FRD G+ VLL D++ R+ +A E+ G P+A + P++ +L L ER + +
Sbjct: 247 YFRD-RGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDR 305
Query: 381 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
GSIT+ + V DD+ +P + LD VLSR++
Sbjct: 306 GSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRL 343
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 131 bits (332), Expect = 4e-34
Identities = 94/277 (33%), Positives = 144/277 (51%), Gaps = 14/277 (5%)
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE--KGDL-KTEHYLPIHREAPAFV 201
G+ V+ TG P+ + G LGR++N +GEPID KG L + PI R P +
Sbjct: 80 GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPL 139
Query: 202 EQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
+A + IL TG++ +D + RG +IG+F GAGVGK+ L+ + N +A +V A
Sbjct: 140 HRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIA 197
Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
+GER RE RE IE + + G K + +V ++ R G +AE+
Sbjct: 198 LIGERGRE----VREFIEGDLGEEGMK----RSVIVVSTSDQSSQLRLNAAYVGTAIAEY 249
Query: 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKG 381
FRD +G+ V+L +D++ RF +A EV G P+ GY P++ + L L ER + KG
Sbjct: 250 FRD-QGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDKG 308
Query: 382 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+IT+ + V DD+ +P + LD VLS +
Sbjct: 309 TITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 125 bits (316), Expect = 8e-32
Identities = 89/288 (30%), Positives = 138/288 (47%), Gaps = 17/288 (5%)
Query: 136 RTIAM--DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL-KTEHYLP 192
R + M EG+ RG R + + V R LGR++N +GEPID KG L + P
Sbjct: 65 RALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYP 124
Query: 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252
+ P +A + L G++ ++ RG ++G+F G+GVGK+VL+ L N
Sbjct: 125 LRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADA 184
Query: 253 AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVG 312
SV +GER RE +E ++ LG + ++ +V +EP R +
Sbjct: 185 D---VSVIGLIGERGRE----VQEFLQD---DLGP-EGLARSVVVVATSDEPALMRRQAA 233
Query: 313 LTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQ 372
L +AE+FRD +G+DVL +D++ RF A E+ G P+ GY PT+ +L L
Sbjct: 234 YLTLAIAEYFRD-QGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLL 292
Query: 373 ERI--TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
ER +G+IT + + V DD +P LD V+ R +
Sbjct: 293 ERAGPGPIGEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAI 340
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 124 bits (314), Expect = 1e-31
Identities = 84/269 (31%), Positives = 136/269 (50%), Gaps = 12/269 (4%)
Query: 149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQ 208
G V TG P+ V VG +G++++ +GEP+D K + ++ P +++ ++
Sbjct: 81 GCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIRE 140
Query: 209 ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268
+ G++ +D L +G ++G+F G+GVGK+ L M +I A +V A +GER R
Sbjct: 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNTSAD--LNVIALIGERGR 197
Query: 269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ 328
E RE IE LG + + +V ++P R + T +AE+FRD +G
Sbjct: 198 E----VREFIER---DLGP-EGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRD-QGL 248
Query: 329 DVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQA 388
+V+L +D++ R A E+ +G P+ GY P++ L L ER T GSIT+
Sbjct: 249 NVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYT 308
Query: 389 IYVPADDLTDPAPATTFAHLDATTVLSRQ 417
+ V DD+ +P T LD VL RQ
Sbjct: 309 VLVDGDDMNEPIADTVRGILDGHFVLDRQ 337
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 123 bits (311), Expect = 4e-31
Identities = 105/340 (30%), Positives = 162/340 (47%), Gaps = 31/340 (9%)
Query: 88 GQVCQVIGAV-----VDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAM-- 140
G+V +VIG + +DV E L L D ++ EV G R +A+
Sbjct: 26 GKVVEVIGTLLRVSGLDVTLGE-----LCELRQRDGTLLQRAEVV-----GFSRDVALLS 75
Query: 141 --DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
GL RG RV+ G P++VPVG LGR+++ +GEPID G L + +P+ P
Sbjct: 76 PFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPP 135
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS 258
+ + + L TG+++VD L G ++G+F AGVGK+ L+ +
Sbjct: 136 DPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG---TQCDVN 192
Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
V A +GER RE RE IE + + G ++ CA E RA+ +
Sbjct: 193 VIALIGERGRE----VREFIELILGEDGMARSVVVCATSDRSSIE----RAKAAYVATAI 244
Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT 378
AE+FRD G VLL +D++ RF +A E+ G P+ G+ P++ +L L ER
Sbjct: 245 AEYFRD-RGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG 303
Query: 379 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+ GSIT++ + + +DP LD +LSR++
Sbjct: 304 ETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREI 343
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 123 bits (310), Expect = 4e-31
Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 16/276 (5%)
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
G++ G RV G +PVG LGR+++ +G P+D G + T+ H + +
Sbjct: 81 GVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRR 140
Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI-MELINNVAKAHGGFSVFAGV 263
+ L G++ ++ + +G ++GLF G+GVGK+VL+ M A V V
Sbjct: 141 PITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADV----IVVGLV 196
Query: 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323
GER RE +E IE LG+ + ++ +V + P R + T T+AE+FR
Sbjct: 197 GERGRE----VKEFIEE---ILGE-EGRARSVVVAAPADTSPLMRLKGCETATTIAEYFR 248
Query: 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKG 381
D +G +VLL +D++ R+ QA E++ +G P+ GY P++ L L ER +G
Sbjct: 249 D-QGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQG 307
Query: 382 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
SIT+ + DDL DP + A LD VLSR+
Sbjct: 308 SITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRE 343
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 122 bits (309), Expect = 6e-31
Identities = 95/321 (29%), Positives = 158/321 (49%), Gaps = 18/321 (5%)
Query: 104 EGLP-PILTALEVVDHSVRLVLEV-AQHMG--EGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
EGL + + V++ ++V A+ MG V + + G+ G RV+
Sbjct: 42 EGLRAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTG 101
Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
+P+G LGR+++ G +D KG +K E ++P+ + + + L GI+ ++
Sbjct: 102 RLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSING 161
Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
L RG ++GLF G GVGK+VL + ++ +A V +GER RE +E IE
Sbjct: 162 LLTVGRGQRLGLFAGTGVGKSVL-LGMMTRFTEAD--IIVVGLIGERGRE----VKEFIE 214
Query: 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339
LG+ + + +V ++ P R R + +AE+FRD +G++VLL +D++ R
Sbjct: 215 H---ILGE-EGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRD-KGKNVLLLMDSLTR 269
Query: 340 FTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK--GSITSVQAIYVPADDLT 397
F QA E++ +G P+ GY P++ L L ER + GSIT+ + DD
Sbjct: 270 FAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQQ 329
Query: 398 DPAPATTFAHLDATTVLSRQV 418
DP + LD VLSR++
Sbjct: 330 DPIADSARGVLDGHIVLSRRL 350
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 120 bits (301), Expect = 6e-30
Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 21/280 (7%)
Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGD----LKTEHYLPIHREAP 198
T GL GQ+V+ VPVG LGR+++ G P+D + K +P P
Sbjct: 73 TIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMP----PP 128
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS 258
A V Q Q L+TGI+ +D +A G ++G+F GVGK+ L+ L N +
Sbjct: 129 AMVRQPITQP-LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN---APDADSN 184
Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
V +GER RE RE I+ + ++ +C +V + P R R T+
Sbjct: 185 VLVLIGERGRE----VREFIDFTL----SEETRKRCVIVVATSDRPALERVRALFVATTI 236
Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT 378
AE FRD G+ V+L D++ R+ +A E++ G + Y P + + L L ER
Sbjct: 237 AEFFRD-NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG 295
Query: 379 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+KGSIT+ + V DD+ +P + LD VLSR++
Sbjct: 296 EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL 335
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 117 bits (295), Expect = 4e-29
Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 21/280 (7%)
Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP---A 199
TE + G V + +P G LG++++ GE ++E+ + + + +AP A
Sbjct: 73 TEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKL--DAPPIHA 130
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
F E+ + TGIK +D + G KIG+F G+GVGK+ L+ + N AKA +V
Sbjct: 131 F-EREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKN-AKAD--INV 186
Query: 260 FAGVGERTREGNDLYR-EMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
+ VGER RE D R E+ E G+ K +V +E + R ++
Sbjct: 187 ISLVGERGREVKDFIRKELGEEGM---------RKSVVVVATSDESHLMQLRAAKLATSI 237
Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT 378
AE+FRD +G +VLL +D++ RF A V + +P G + + + L ER T
Sbjct: 238 AEYFRD-QGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT 295
Query: 379 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
+KGSIT + + V DDL P P LD VL R++
Sbjct: 296 QKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKREL 335
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 116 bits (292), Expect = 1e-28
Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 20/302 (6%)
Query: 123 VLEVAQHMGEGVVRTI--AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
V+ AQ +G RTI + +GL R + TG P++V VG LG +++ G+ I
Sbjct: 42 VIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGK-IV 100
Query: 181 EKGDLKTE-----HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235
E+ D I P++ E+ ++ L+TG++ +D L G ++G+F A
Sbjct: 101 ERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA 160
Query: 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
G GKT L+ LI + + V +GER RE E +ES ++ ++ KC
Sbjct: 161 GCGKTSLMNMLIEH---SEADVFVIGLIGERGRE----VTEFVES--LRASSRR--EKCV 209
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
LVY + R L TVAE+FRD +G+ V+LFID++ R+ +A +V+ G +P
Sbjct: 210 LVYATSDFSSVDRCNAALVATTVAEYFRD-QGKRVVLFIDSMTRYARALRDVALAAGELP 268
Query: 356 SAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 415
+ GY ++ L L ER T GSIT+ + + +++ DP + LD LS
Sbjct: 269 ARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLS 328
Query: 416 RQ 417
R+
Sbjct: 329 RK 330
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 111 bits (280), Expect = 1e-26
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 10/230 (4%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
A ++ E +V + +D T ++ G V TG + VPVG LGR+++ +G P+D G L
Sbjct: 62 FAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+ P+ R APA +E+ + L TGIKVVD L P RG + + G GKT + ++
Sbjct: 122 QATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N K V+ +G++ + + L + A +V + ++PP
Sbjct: 182 AIIN-QKDSDVICVYVAIGQK--------ASAVARVIETLREHGALEYTTVVVAEASDPP 232
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
G + G +AE+FRD +GQD L+ D++ + A E+S LL R P
Sbjct: 233 GLQYLAPFAGCAIAEYFRD-QGQDALIVYDDLSKHAAAYRELSLLLRRPP 281
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 109 bits (273), Expect = 3e-26
Identities = 80/275 (29%), Positives = 132/275 (48%), Gaps = 13/275 (4%)
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
G++ G RV + + +G LGR++N +GEP+D KG L L +++
Sbjct: 74 GVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRR 133
Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
L G+ ++ L +G ++GL G+GVGK+VL + +I +A V +G
Sbjct: 134 AVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVL-LGMITRYTQAD--VVVVGLIG 190
Query: 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324
ER RE +E IE + G +K +V +E P R + +A ++RD
Sbjct: 191 ERGRE----VKEFIEHSLQAAG----MAKSVVVAAPADESPLMRIKATELCHAIATYYRD 242
Query: 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSI 383
+G DVLL +D++ R+ A E++ LG P+ GY P+ + + L E + G++
Sbjct: 243 -KGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTM 301
Query: 384 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
T++ + DD DP A LD VLSR++
Sbjct: 302 TAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKL 336
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 108 bits (271), Expect = 2e-25
Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 15/269 (5%)
Query: 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
+G V V + V GL +++ E+++ V +A ++ E V + M +
Sbjct: 27 VGTVVSVGDGIARV---YGLENVMSG-ELIEFEGG-VQGIALNLEEDSVGAVIMGDYSDI 81
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
G V TG + VPVG LGR++N +GEPID KG + ++ + P+ + AP +E+ +
Sbjct: 82 REGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFSPVEKIAPGVIERKSV 141
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+ L TGIK +D + P RG + + G GKT + ++ I N K + ++ +G++
Sbjct: 142 HEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIIN-QKDSDVYCIYVAIGQK 200
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
+ V KL + A + +V ++ + TG T+ E+FRD
Sbjct: 201 --------ASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYTGCTMGEYFRD-N 251
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIP 355
G+ L+ D++ + A ++S LL R P
Sbjct: 252 GKHALIIYDDLSKQAVAYRQISLLLRRPP 280
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 107 bits (269), Expect = 2e-25
Identities = 95/338 (28%), Positives = 144/338 (42%), Gaps = 23/338 (6%)
Query: 90 VCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGTEGL 146
+ ++ G ++ V EG L +E D VR VLEV +GT GL
Sbjct: 10 ISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEV----RGDKAVVQVFEGTSGL 65
Query: 147 -VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
+G V TG + +PV LGRI N G+PID ++ E L I+ +
Sbjct: 66 DTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIY 125
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS----VFA 261
++ + TGI +D + RG K+ +F G+G+ L + I A G VFA
Sbjct: 126 PEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVDGEEEEFAVVFA 184
Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
+G E E E+G + + L ++P R LTVAE+
Sbjct: 185 AMGITHEEALFFMDEFEETGAL--------DRAVLFLNLADDPAVERIITPRMALTVAEY 236
Query: 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTK 379
+ VL+ + ++ + +A E+SA +P GY + TDL + ER +
Sbjct: 237 LAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGR 296
Query: 380 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
KGSIT + + +P DD+T P P T + VLSR
Sbjct: 297 KGSITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRD 334
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 106 bits (266), Expect = 5e-25
Identities = 94/342 (27%), Positives = 153/342 (44%), Gaps = 29/342 (8%)
Query: 90 VCQVIGAVVDVRFDEGLPPI----LTALEVVDHSVR--LVLEVAQHMGEGVVRTIAMDGT 143
+ ++ G +V V EG+ P+ + +E D R VL+ EG+ +GT
Sbjct: 5 ITEIAGPLVFV---EGVEPVAYNEIVEIETPDGEKRRGQVLDS----SEGIAVVQVFEGT 57
Query: 144 EGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
GL G +V TG + +PV LGRI+N GEPID ++ + I+
Sbjct: 58 TGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYA 117
Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS---- 258
+ ++ + TGI +D + RG K+ +F G+G+ L + I A G S
Sbjct: 118 REYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESEFAV 176
Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
VFA +G E N ++ E+G ++ + + ++P R LT
Sbjct: 177 VFAAMGITYEEANFFMKDFEETGALE--------RAVVFLNLADDPAVERIVTPRMALTA 228
Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--IT 376
AE+ + VL+ + ++ + +A E+SA +P GY + TDL + ER
Sbjct: 229 AEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRV 288
Query: 377 TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
KKGSIT + + +P DD+T P P T + VLSR++
Sbjct: 289 KGKKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSREL 330
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 99.3 bits (248), Expect = 1e-23
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
+ VPV LGRI N G+PID ++ E YL I+ V + ++++ TGI +
Sbjct: 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAI 60
Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGGFS-VFAGVGERTREGNDLY 274
D + RG KI +F G+G+ L ++ V F+ VFA +G +
Sbjct: 61 DGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFK 120
Query: 275 REMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFI 334
+ E+G + + L N+P R LT AE+ +G+ VL+ +
Sbjct: 121 DDFEETGAL--------ERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVIL 172
Query: 335 DNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQAIYVP 392
++ + +A E+SA +P GY + TDL + ER + GSIT + + +P
Sbjct: 173 TDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP 232
Query: 393 ADDLTDPAPATT 404
DD+T P P T
Sbjct: 233 NDDITHPIPDLT 244
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 99 bits (249), Expect = 5e-23
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQ 208
G VL P ++ + LGR+++ G P+D K L H P+ P+ + + Q+
Sbjct: 80 GAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQE 139
Query: 209 ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGERT 267
I TGIK +D +G +IG+F G GK+ L++ +AK + +V A +GER
Sbjct: 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS----SLLSTIAKGSKSTINVIALIGERG 195
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
RE + Y E + G+ A + ++ +E + G +T+AE+FRD +G
Sbjct: 196 REVRE-YIEQHKEGL-------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRD-QG 246
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
VL +D++ R+ A EV+ G SA Y ++ + ER KGSIT++
Sbjct: 247 HRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALY 306
Query: 388 AI 389
AI
Sbjct: 307 AI 308
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 98.0 bits (245), Expect = 3e-22
Identities = 88/314 (28%), Positives = 139/314 (44%), Gaps = 27/314 (8%)
Query: 97 VVDVRFDEGLPPILTALEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGTEGL-VRGQRVL 153
V V + E + +E+ + R VLEV E +GT GL ++ +V
Sbjct: 20 VEGVAYGE-----IVEIELPNGEKRRGQVLEV----SEDKAVVQVFEGTTGLDLKDTKVR 70
Query: 154 NTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 213
TG P+ +PV LGRI + +G PID ++ E L I+ V + ++ + TG
Sbjct: 71 FTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTG 130
Query: 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS----VFAGVGERTRE 269
I +D L RG K+ +F G+G+ L ++ AK G VFA +G E
Sbjct: 131 ISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQ-AKVLGEEENFAVVFAAMGITFEE 189
Query: 270 GNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD 329
N + E+G + + + ++P R LT AE+ +G
Sbjct: 190 ANFFMEDFEETGAL--------ERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMH 241
Query: 330 VLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQ 387
VL+ + ++ + +A E+SA +P GY + TDL + ER KKGSIT +
Sbjct: 242 VLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIP 301
Query: 388 AIYVPADDLTDPAP 401
+ +P DD+T P P
Sbjct: 302 ILTMPDDDITHPIP 315
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 94.8 bits (236), Expect = 5e-21
Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 22/301 (7%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
+L +A ++ E V + + L G V TG + VPVG LGR+++ +G P+D
Sbjct: 59 LLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGG 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
G L + LPI R AP +++A L TG+KV+D L P RG + + G GKT +
Sbjct: 119 GPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAI 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK----LGDKQADSKCALVY 298
++ I N K ++ +G+R S V K L + A +V
Sbjct: 179 AIDTILN-QKGRNVLCIYCAIGQRA------------SAVAKVVANLREHGAMDYTIVVV 225
Query: 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAV 358
+ N+PPG + ++ EHF + G+DVL+ D++ + +A E+S LL R P
Sbjct: 226 TEGNDPPGLQYIAPYAATSIGEHFMEQ-GRDVLIVYDDLTQHARAYRELSLLLRRPPGRE 284
Query: 359 GYQPTLATDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 414
+ + L ER T + GS+T++ I A +++ P + D L
Sbjct: 285 AFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYL 344
Query: 415 S 415
S
Sbjct: 345 S 345
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 93.4 bits (233), Expect = 1e-20
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 15/270 (5%)
Query: 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
+G V V + V GL ++ A E+V+ V +A ++ E V + +
Sbjct: 27 EVGTVISVGDGIARV---SGLENVM-AGELVEFPGG-VKGMALNLEEDSVGAVILGDYSD 81
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
+ G V TG + VPVG LGR+++ +G PID KG + P+ ++AP +++ +
Sbjct: 82 IKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKS 141
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
+ L TGIK +D L P RG + + G GKT + ++ I N K G ++ +G+
Sbjct: 142 VNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGSGVKCIYVAIGQ 200
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
+ R + + V L + A +V ++ + G +AE+FRD
Sbjct: 201 K--------RSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRD- 251
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
G+DVL+ D++ + A E+S LL R P
Sbjct: 252 NGKDVLIVYDDLSKHAVAYREISLLLRRPP 281
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 90.4 bits (225), Expect = 2e-20
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 10/197 (5%)
Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
VPVG LGR+++ +G PID KG ++T+ PI +AP + + + + L TGIK +D
Sbjct: 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAID 61
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
+ P RG + + G GKT + ++ I N K + ++ +G++ +
Sbjct: 62 AMIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGKKVYCIYVAIGQK--------ASTV 112
Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
V L + A +V ++P + TG + E+F D G+ L+ D++
Sbjct: 113 AQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMD-NGKHALIIYDDLS 171
Query: 339 RFTQANSEVSALLGRIP 355
+ A ++S LL R P
Sbjct: 172 KQAVAYRQMSLLLRRPP 188
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 84.9 bits (210), Expect = 2e-19
Identities = 50/193 (25%), Positives = 72/193 (37%), Gaps = 32/193 (16%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD 287
I +FG G GKT L ++L N+A GG V+ + E E +
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIG--------ESL 51
Query: 288 KQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV 347
K A +V+ ++P AR L G D L+ +D + R +A E+
Sbjct: 52 KGALDNLIIVFATADDPAAAR-------LLSKAERLRERGGDDLIILDELTRLVRALREI 104
Query: 348 SALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP----APAT 403
GY L +L L ER +KG +T + + VP+ D DP
Sbjct: 105 ---------REGYPGELDEELRELLERA---RKGGVTVIFTLQVPSGDKGDPRLTRGAQN 152
Query: 404 TFAHLDATTVLSR 416
D VLSR
Sbjct: 153 LEDIADTVIVLSR 165
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 89.8 bits (223), Expect = 2e-19
Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 37/296 (12%)
Query: 140 MDGTEGLVRGQRVL-------NTGSPITVPVGRVTLGRIMNVIGEPID--------EKGD 184
++ EG++ G RV S +P+G LGR+++ G+P+D E G
Sbjct: 82 LEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGA 141
Query: 185 LKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244
L T + P+ R + +L TG++ ++ L RG ++GLF G+GVGK+VL +
Sbjct: 142 LITPPFNPLQRTPI--------EHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVL-L 192
Query: 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304
++ +A V +GER RE D IE+ LG + ++ ++ +
Sbjct: 193 GMMARYTQAD--VIVVGLIGERGREVKDF----IEN---ILGA-EGRARSVVIAAPADVS 242
Query: 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTL 364
P R + +AE FRD GQ VLL +D++ R+ A E++ +G P+ GY P++
Sbjct: 243 PLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV 301
Query: 365 ATDLGGLQERITT--TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQV 418
L L ER + GSIT+ + DD DP + A LD VLSR++
Sbjct: 302 FAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRL 357
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 90.2 bits (224), Expect = 2e-19
Identities = 74/241 (30%), Positives = 107/241 (44%), Gaps = 21/241 (8%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243
++K P+ P + E+ + L+TG +++D P +GG + G G GKTV
Sbjct: 181 EIKMYQKWPVRIPRP-YKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQ 239
Query: 244 MELINNVAK-AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
+L AK + V+ G GER E D+ E E K G + L+ N
Sbjct: 240 HQL----AKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTV-LIANTSN 294
Query: 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP 362
P AR TG+T+AE+FRD G DV L D+ R+ +A E+S L +P GY
Sbjct: 295 MPVAAREASIYTGITIAEYFRD-MGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPA 353
Query: 363 TLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATT------FAHLD 409
LA+ L ER + GS+T + A+ P D ++P T F LD
Sbjct: 354 YLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALD 413
Query: 410 A 410
A
Sbjct: 414 A 414
Score = 29.7 bits (67), Expect = 3.4
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
T G+ G+ V+ TG+P++V +G LG I + + P+D
Sbjct: 53 TSGIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQRPLD 90
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 85.4 bits (212), Expect = 8e-18
Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 15/235 (6%)
Query: 174 VIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231
VI E G++ + P+ + P + + LVTG +V+D L P +GG +
Sbjct: 171 VIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAV 229
Query: 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291
G G GKTV L A G ++ G GER E ++ +E E G D
Sbjct: 230 PGPFGSGKTVSQHTLSKL---ADGDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMD 286
Query: 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALL 351
L+ N P AR TG+T+AE++RD G DV L D+ R+ +A E+S L
Sbjct: 287 RTV-LIANTSNMPVAAREASIYTGITIAEYYRD-MGYDVALMADSTSRWAEALREISGRL 344
Query: 352 GRIPSAVGYQPTLATDLGGLQER---ITT----TKKGSITSVQAIYVPADDLTDP 399
+P GY L + L ER + + GSIT + A+ P D ++P
Sbjct: 345 EEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEP 399
Score = 28.8 bits (65), Expect = 6.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE 181
T G+ G++V NTG P++V +G L I + I P+D
Sbjct: 54 TAGIRPGEKVENTGRPLSVELGPGLLKSIYDGIQRPLDV 92
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 82.5 bits (204), Expect = 6e-17
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 22/223 (9%)
Query: 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
R E+ L+TG +V+D L P +GG + G G GKTV ++++
Sbjct: 195 RSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTV--------ISQSL 246
Query: 255 GGFS-----VFAGVGERTREGNDLYREMIESGVIKLGDKQADSK-CALVYGQMNEPPGAR 308
+S V+ G GER E ++ + E + G +++ K LV N P AR
Sbjct: 247 SKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAR 306
Query: 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDL 368
TG+T+AE+FRD G +V + D+ R+ +A E+S L +P+ GY L L
Sbjct: 307 EASIYTGITLAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARL 365
Query: 369 GGLQERITTTK-------KGSITSVQAIYVPADDLTDPAPATT 404
ER K +GS++ V A+ P D +DP + T
Sbjct: 366 ASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSAT 408
Score = 32.8 bits (75), Expect = 0.34
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
T GL G VL TG P++V +G LG I + I P+ + Y+P PA
Sbjct: 54 TSGLTVGDPVLRTGKPLSVELGPGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPA 110
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 81.1 bits (201), Expect = 7e-17
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 18/232 (7%)
Query: 179 IDEKGD---LKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235
++ G + P+ + P E+ + L+TG +V+D L P +GG + G
Sbjct: 108 VEFDGKKEEITMVQKWPVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPF 166
Query: 236 GVGKTVLIMELINNVAK-AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294
G GKTV+ L +K ++ ++ G GER E ++ E E G+
Sbjct: 167 GCGKTVIQQSL----SKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTV 222
Query: 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRI 354
L+ N P AR TG+T+AE+FRD G +V L D+ R+ +A E+S L +
Sbjct: 223 -LIANTSNMPVAAREASIYTGITIAEYFRD-MGYNVALMADSTSRWAEALREISGRLEEM 280
Query: 355 PSAVGYQPTLATDLGGLQER---ITT----TKKGSITSVQAIYVPADDLTDP 399
P GY L L ER + ++GS+T V A+ P D ++P
Sbjct: 281 PGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEP 332
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 78.9 bits (195), Expect = 6e-16
Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 17/266 (6%)
Query: 142 GTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF- 200
GT G+ G V+ G P+ V LGR N G+PID +L+ E PI P+
Sbjct: 57 GTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEGE---PIEIGGPSVN 113
Query: 201 -VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
V++ ++++ TGI ++D+ KI +F +G L+ + +A +
Sbjct: 114 PVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARI---ALQAEADIII 170
Query: 260 FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319
G+G D Y ++ + A + + ++PP V L VA
Sbjct: 171 LGGMGLT----FDDYLFFKDT----FENAGALDRTVMFIHTASDPPVECLLVPDMALAVA 222
Query: 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-ITTT 378
E F + VL+ + ++ F A E+S + +IPS GY +L +DL E+ +
Sbjct: 223 EKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFE 282
Query: 379 KKGSITSVQAIYVPADDLTDPAPATT 404
GSIT + +P DD+T P P T
Sbjct: 283 DGGSITIIAVTTMPGDDVTHPVPDNT 308
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family,
beta-barrel domain. This family includes the ATP
synthase alpha and beta subunits the ATP synthase
associated with flagella.
Length = 69
Score = 71.8 bits (177), Expect = 6e-16
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 90 VCQVIGAVVDVRFDEG-LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
+ QVIG VVDV F G LP + ALEV + +L ++G VR + M GT+GL
Sbjct: 1 IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60
Query: 148 RGQRVLNTG 156
RG V TG
Sbjct: 61 RGDEVKRTG 69
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 78.2 bits (193), Expect = 1e-15
Identities = 83/309 (26%), Positives = 136/309 (44%), Gaps = 29/309 (9%)
Query: 113 LEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGTEGL-VRGQRVLNTGSPITVPVGRVTLG 169
L + D +VR VLEV+ + + VV+ +GT G+ + TG + PV LG
Sbjct: 29 LTLPDGTVRSGQVLEVSGN--KAVVQV--FEGTSGIDAKKTTCEFTGDILRTPVSEDMLG 84
Query: 170 RIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI 229
R+ N G+PID+ + E YL I+ + + ++++ TGI +D++ RG KI
Sbjct: 85 RVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKI 144
Query: 230 GLFGGAG----------VGKTVLIMELINNVAKAH-GGFS-VFAGVGERTREGNDLYREM 277
+F AG + L+ +V H F+ VFA +G ++
Sbjct: 145 PIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDF 204
Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
E+G ++ + L N+P R LT AE+ + VL+ + ++
Sbjct: 205 EENGSME--------RVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256
Query: 338 FRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI--TTTKKGSITSVQAIYVPADD 395
+ A EVSA +P G+ + TDL + ER + GSIT + + +P DD
Sbjct: 257 SSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDD 316
Query: 396 LTDPAPATT 404
+T P P T
Sbjct: 317 ITHPIPDLT 325
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 76.6 bits (190), Expect = 5e-15
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 133 GVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLP 192
G V + E + G V TG + VPVG LGR++N +G+PID KG ++ P
Sbjct: 72 GAV---ILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRP 128
Query: 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG 226
+ R+AP +++ + + L TGIK +D + P RG
Sbjct: 129 VERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRG 162
Score = 29.6 bits (68), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
G + E+F D G+D L+ D++ + A ++S LL R P
Sbjct: 241 AGCAMGEYFMD-NGKDALIVYDDLSKQAVAYRQLSLLLRRPP 281
>gnl|CDD|204648 pfam11421, Synthase_beta, ATP synthase F1 beta subunit. The NMR
solution structure of the protein in SDS micelles was
found to contain two helices, an N-terminal amphipathic
alpha-helix and a C-terminal alpha-helix separated by a
large unstructured internal domain. The N-terminal
alpha-helix is the Tom20 receptor binding site whereas
the C-terminal alpha-helix is located upstream of the
mitochondrial processing peptidase cleavage site.
Length = 48
Score = 64.6 bits (157), Expect = 1e-13
Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 1 MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPA-ATRRASPYGHLLSR 47
MASRRLLSSLLRSS RRS SKSSL NSS P+ RASP G+LL+R
Sbjct: 1 MASRRLLSSLLRSSSRRSASKSSLGNSSPRLPSPRAPRASPCGYLLNR 48
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 68.1 bits (166), Expect = 2e-12
Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 27/284 (9%)
Query: 132 EGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID------EKGDL 185
+G + I MD + GQ+V+ TG + +PVG LG+++N +G + + L
Sbjct: 88 DGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALL 147
Query: 186 KTEHYL-PIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244
++E L + AP V ++ L+TG K VD + P RG + + G GKT + +
Sbjct: 148 ESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAV 207
Query: 245 ELINN-------VAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
I N + + S++ +G+R ++R + G ++ A +
Sbjct: 208 STIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAA--- 264
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSA 357
EP G + +G+T+ E+F + G+ L D++ + A ++S LL R P
Sbjct: 265 -----EPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQISLLLRRPPGR 318
Query: 358 VGYQPTLATDLGGLQERITTTKK----GSITSVQAIYVPADDLT 397
Y + L ER GS+T++ + ++D+T
Sbjct: 319 EAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVT 362
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 66.2 bits (161), Expect = 1e-11
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
++ G GER E D+ E + K G K + L+ N P AR TG+T+
Sbjct: 686 IYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTGITI 744
Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI--- 375
AE+FRD G DV L D+ R+ +A E+S L +P GY LA+ L ER
Sbjct: 745 AEYFRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRV 803
Query: 376 ----TTTKKGSITSVQAIYVPADDLTDPAPATTF 405
+ + GS++ + A+ P D ++P T
Sbjct: 804 VTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTL 837
Score = 42.3 bits (99), Expect = 4e-04
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTV----LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
+GG + G G GK V LI+ + K + + G G++T EGN+ + E+ E
Sbjct: 225 AKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTELEE 284
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 63.8 bits (156), Expect = 5e-11
Identities = 68/256 (26%), Positives = 112/256 (43%), Gaps = 27/256 (10%)
Query: 100 VRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
V F++G I AL + ++V +VL MG+G I EG V TG
Sbjct: 32 VEFEDGTIGI--ALNLESNNVGVVL-----MGDG--LMI----QEG----SSVKATGKIA 74
Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
+PV LGR++N + +PID KG++ I AP + + + + L TG+ +D
Sbjct: 75 QIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDS 134
Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
+ P RG + + G GKT + + I N K V+ +G++ +
Sbjct: 135 MIPIGRGQRELIIGDRQTGKTAVATDTILN-QKGQNVICVYVAIGQKASS--------VA 185
Query: 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339
V L ++ A +V + P + TG +AE+F G+ L+ D++ +
Sbjct: 186 QVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFM-YRGRHTLIIYDDLSK 244
Query: 340 FTQANSEVSALLGRIP 355
QA ++S LL R P
Sbjct: 245 QAQAYRQMSLLLRRPP 260
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 59.0 bits (144), Expect = 2e-09
Identities = 80/252 (31%), Positives = 116/252 (46%), Gaps = 50/252 (19%)
Query: 174 VIGEPIDEKG---DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIG 230
I DE G +L P+ R P + E+ + L+TG +V+D P +GG
Sbjct: 173 TIAVLEDEDGEGVELTMMQKWPVRRPRP-YKEKLPPVEPLITGQRVIDTFFPVAKGGTAA 231
Query: 231 LFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGERTREGNDLYREMIESGVI----KL 285
+ G G GKTV +L AK A ++ G GER GN EM E V+ +L
Sbjct: 232 IPGPFGSGKTVTQHQL----AKWADADIVIYVGCGER---GN----EMTE--VLEEFPEL 278
Query: 286 GDKQADSKCALVYGQ--M----------NEPPGAR-ARVGLTGLTVAEHFRDAEGQDVLL 332
D + G+ M N P AR A + TG+T+AE++RD G DVLL
Sbjct: 279 IDPKT--------GRPLMERTVLIANTSNMPVAAREASI-YTGITIAEYYRD-MGYDVLL 328
Query: 333 FIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER---ITT--TKKGSITSVQ 387
D+ R+ +A E+S L +P GY LA+ L ER + T ++GS+T +
Sbjct: 329 MADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIG 388
Query: 388 AIYVPADDLTDP 399
A+ P D ++P
Sbjct: 389 AVSPPGGDFSEP 400
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 41.6 bits (97), Expect = 1e-04
Identities = 26/130 (20%), Positives = 32/130 (24%), Gaps = 28/130 (21%)
Query: 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284
G I + G G GKT L L + GG GE E +I G K
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID--GEDILEEVLDQLLLIIVGGKK 58
Query: 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDV-LLFIDNIFRFTQA 343
L + A +L +D I A
Sbjct: 59 ASGSG-------------------------ELRLRLALALARKLKPDVLILDEITSLLDA 93
Query: 344 NSEVSALLGR 353
E LL
Sbjct: 94 EQEALLLLLE 103
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 38.9 bits (91), Expect = 0.004
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 29/197 (14%)
Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYL---PIHREAPAFVEQATEQQILVTGIK 215
L R+ +V G ++ + H+ P+H +E ++ + +
Sbjct: 69 ARPRERYRVLVRVDSVNGTDPEKLA--RRPHFDDLTPLHPRERLRLETGSDDLSM----R 122
Query: 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG-VGERTREGNDLY 274
VVDL+AP +G + + GKTVL+ ++ VA H + + ER E D+
Sbjct: 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMR 182
Query: 275 REMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE-GQDVLLF 333
R S VY + P + + L + R E G+DV++
Sbjct: 183 R----------------SVKGEVYASTFDRPPDE-HIRVAELVLERAKRLVEQGKDVVIL 225
Query: 334 IDNIFRFTQA-NSEVSA 349
+D++ R +A N+EV +
Sbjct: 226 LDSLTRLARAYNNEVES 242
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a
bacterial ATP-dependent RNA/DNA helicase. It is a
homohexamer. Each monomer consists of an N-terminal
domain of the OB fold, which is responsible for binding
to cysteine rich nucleotides. This alignment is of the
C-terminal ATP binding domain.
Length = 249
Score = 38.1 bits (89), Expect = 0.004
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDL 273
+VVDL AP +G + + GKT L+ + N + K H + + + ER E D+
Sbjct: 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDM 64
Query: 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE-GQDVLL 332
R + K ++ +EPP +V L A+ R E G+DV++
Sbjct: 65 QRSV---------------KGEVIASTFDEPPERHVQVAEMVLEKAK--RLVEHGKDVVI 107
Query: 333 FIDNIFRFTQANSEVSALLGRIPS 356
+D+I R +A + V G+I S
Sbjct: 108 LLDSITRLARAYNTVVPPSGKILS 131
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 34.2 bits (79), Expect = 0.13
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 169 GRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF--------VEQATEQQILVTGIKVVDLL 220
G+I+++ G I + + + F V+ EQ L TGI +DLL
Sbjct: 81 GKIIDIDGNIIYPE-AQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQ--LYTGIIAIDLL 137
Query: 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280
P +G + + G GKT + + I N K ++ +G++ + +Y + E
Sbjct: 138 IPIGKGQRELIIGDRQTGKTHIALNTIIN-QKNTNVKCIYVAIGQKRENLSRIYETLKEH 196
Query: 281 GVIK---LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFID-- 335
+K + D + S Y Q P + AE+ + DVL+ D
Sbjct: 197 DALKNTIIIDAPSTS----PYEQYLAP--------YVAMAHAENI--SYNDDVLIVFDDL 242
Query: 336 ----NIFRFTQANSEVSALLGR 353
NI+R E++ L +
Sbjct: 243 TKHANIYR------EIALLTNK 258
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 32.9 bits (75), Expect = 0.15
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 215 KVVDLLAPYQRGGKIGLF--GGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272
+++D L + GG + G +G GKT L+ EL+ + A G +
Sbjct: 11 RLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQA--ERNPPYAFSQ 68
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
RE++ + +L + + AL GA GL L A + ++L
Sbjct: 69 ALRELLRQLLRELAAELLLLREAL-----LAALGAELIEGLQDLVELLERLLARARPLVL 123
Query: 333 FIDNI 337
+D++
Sbjct: 124 VLDDL 128
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 32.4 bits (74), Expect = 0.40
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 212 TGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
TGI +D L RG + + G G GKT+ ++ + A+
Sbjct: 7 TGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE 50
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 32.6 bits (75), Expect = 0.43
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
EH P R A ++ + I V V D+L ++GG + L G GVGKT
Sbjct: 189 EHMPPRERTAWRYLLELLANMIPVR---VEDIL---KQGGVVALVGPTGVGKT 235
>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 31.6 bits (72), Expect = 0.61
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
+ L+ ++RG + L G GVGKT L + + N + KA G SV
Sbjct: 94 DLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVL 137
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 29.9 bits (68), Expect = 0.85
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHG 255
L+G G GK+ L L + K G
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKHLG 27
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 31.8 bits (72), Expect = 0.86
Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 24/172 (13%)
Query: 2 ASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPA---ATRRASPYGHLLSRVSEYATSAAAT 58
+S +L S S S+++ SS S A +++R Y LLSRV A
Sbjct: 232 SSTAVLLKRHSGSSGASLISSNITPSSSNSEAMSTSSKRPYIYPALLSRV--------AV 283
Query: 59 APPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVV-- 116
+ D KK G D FTG A+ + +I D L A ++
Sbjct: 284 EFKMRLQLGDHKK-DGLLYRDAFTGSEAVDVLMLIIRT-SDRNLALLNGRSLDAQKLFHD 341
Query: 117 ---DHSVRL-VLEVAQHMGEGVVRTIAMD----GTEGLVRGQRVLNTGSPIT 160
DH +R +E+ Q G IA + T G+ L S T
Sbjct: 342 VTYDHRLRDSRIEIYQLRGYS-DMRIAHNFPTSSTSFENMGKATLTNSSSST 392
>gnl|CDD|221226 pfam11794, HpaB_N, 4-hydroxyphenylacetate 3-hydroxylase N terminal.
HpaB encodes part of the 4-hydroxyphenylacetate
3-hydroxylase from Escherichia coli. HpaB is part of a
heterodimeric enzyme that also requires HpaC. The enzyme
is NADH-dependent and uses FAD as the redox chromophore.
This family also includes PvcC, which may play a role in
one of the proposed hydroxylation steps of pyoverdine
chromophore biosynthesis.
Length = 265
Score = 31.3 bits (72), Expect = 0.89
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Query: 95 GAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLN 154
A+ D + D PP E D V +V E +G+V VRG + L
Sbjct: 142 HAITDPKGDRSKPP---HQEDPDVYVHVVEETD----DGIV-----------VRGAKALA 183
Query: 155 TGSPIT 160
TG+ I
Sbjct: 184 TGAAIA 189
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 31.6 bits (72), Expect = 1.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
+ G G GKTVL+ L+ K V
Sbjct: 441 IIGPTGAGKTVLLSFLLAQALKYGNPQIVA 470
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 31.3 bits (71), Expect = 1.1
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 34/134 (25%)
Query: 1 MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
MA+RR+ SSLL S+S ++SS + R G + R ++T+AAA
Sbjct: 1 MAARRI-SSLL--------SRSLSASSSALLRSRGRNGGR-GRGIRR---FSTAAAAVEE 47
Query: 61 PAQTPKSDVKKGG---GGKITDEFTGKG---------------AIGQVCQVIGAVVDVR- 101
P TP V G+ D +GK A G V AV R
Sbjct: 48 PI-TPPVQVSYTQLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARK 106
Query: 102 -FDEGLPPILTALE 114
FDEG P +TA E
Sbjct: 107 AFDEGPWPKMTAYE 120
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 31.1 bits (71), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 227 GKIGLFGGAGVGKTVLIMELINNVAKAH 254
G + +FG G GK+ + LI ++A+ H
Sbjct: 811 GHLAIFGSPGYGKSTFLQTLIMSLARQH 838
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 31.1 bits (70), Expect = 1.4
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 1 MASRRLLSSLLRSSVRR--SPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAAT 58
A L S++RR P KS+ S S+ P + L R + +A+A+
Sbjct: 5 AAPATSLRLTPGSTLRRLSFPPKSNPSALSLPLPPTFHHLAALSGLPRR-RRFCAAASAS 63
Query: 59 APPAQTPKSDVKKGGGGKITDEFTGKGAIGQV 90
++ K + KG G+ EF K I V
Sbjct: 64 LQSPESAKVEAAKGAFGEAVGEFRKKLRIADV 95
>gnl|CDD|239664 cd03693, EF1_alpha_II, EF1_alpha_II: this family represents the
domain II of elongation factor 1-alpha (EF-1a) that is
found in archaea and all eukaryotic lineages. EF-1A is
very abundant in the cytosol, where it is involved in
the GTP-dependent binding of aminoacyl-tRNAs to the A
site of the ribosomes in the second step of translation
from mRNAs to proteins. Both domain II of EF1A and
domain IV of IF2/eIF5B have been implicated in
recognition of the 3'-ends of tRNA. More than 61% of
eukaryotic elongation factor 1A (eEF-1A) in cells is
estimated to be associated with actin cytoskeleton. The
binding of eEF1A to actin is a noncanonical function
that may link two distinct cellular processes,
cytoskeleton organization and gene expression.
Length = 91
Score = 28.7 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 160 TVPVGRVTLGRI---MNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
TVPVGRV G + M V P G++K+ + +H E +E+A
Sbjct: 20 TVPVGRVETGVLKPGMVVTFAPAGVTGEVKS---VEMHHEP---LEEA 61
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 29.9 bits (67), Expect = 1.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249
+ + KI + G GVGKT L+ L+ +
Sbjct: 2 FMKEFKIVVLGDGGVGKTTLLNRLVGD 28
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine
triphosphatases (GTPases). Rab GTPases form the largest
family within the Ras superfamily. There are at least 60
Rab genes in the human genome, and a number of Rab
GTPases are conserved from yeast to humans. Rab GTPases
are small, monomeric proteins that function as molecular
switches to regulate vesicle trafficking pathways. The
different Rab GTPases are localized to the cytosolic
face of specific intracellular membranes, where they
regulate distinct steps in membrane traffic pathways. In
the GTP-bound form, Rab GTPases recruit specific sets of
effector proteins onto membranes. Through their
effectors, Rab GTPases regulate vesicle formation,
actin- and tubulin-dependent vesicle movement, and
membrane fusion. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular organisms
possess 5-20 Rab members, several have been found to
possess 60 or more Rabs; for many of these Rab isoforms,
homologous proteins are not found in other organisms.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Since crystal
structures often lack C-terminal residues, the lipid
modification site is not available for annotation in
many of the CDs in the hierarchy, but is included where
possible.
Length = 159
Score = 29.7 bits (68), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI L G +GVGKT L++ ++N
Sbjct: 2 KIVLIGDSGVGKTSLLLRFVDN 23
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 29.3 bits (67), Expect = 2.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG------------FSVFAGVGERTR 268
G +IGL G G GK+ L ++LI + G F +G GE+ R
Sbjct: 24 NPGDRIGLVGRNGAGKSTL-LKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-GEKMR 78
>gnl|CDD|204902 pfam12396, DUF3659, Protein of unknown function (DUF3659). This
domain family is found in bacteria and eukaryotes, and
is approximately 70 amino acids in length.
Length = 64
Score = 27.0 bits (61), Expect = 3.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 161 VPVGRVTLGRIMNVIGEPIDEKGD 184
VGRV G + G +DE GD
Sbjct: 21 NVVGRVVEGDPKKLAGRKVDEDGD 44
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 29.9 bits (68), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 160 TVPVGRVTLGRI---MNVIGEPIDEKGDLKT--EHYLPIHREAP 198
TVPVGRV G + V+ P G++K+ H+ + + P
Sbjct: 241 TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEP 284
>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication,
recombination, and repair].
Length = 279
Score = 29.6 bits (67), Expect = 3.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 212 TGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
TG +D RG ++G GKT L ++L+ N K GG + F
Sbjct: 44 TGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAF 93
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB.
Length = 226
Score = 29.1 bits (66), Expect = 3.3
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 212 TGIKVVDLL--APYQRGGKIGLFGGAGVGKTVLIMELINNVAKA--HGG 256
TG K +D L G +FG G GKT L ++L GG
Sbjct: 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGG 51
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 28.4 bits (63), Expect = 3.4
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 228 KIGLFGGAGVGKTVLIMEL----------INNVAKAHGGFSVFAGVGERTREGNDLYREM 277
I + G G GK+ L +L ++++ + G + G + +L E+
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEI 60
Query: 278 IE 279
++
Sbjct: 61 LD 62
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
This model represents the counterpart of bacterial EF-Tu
for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
alpha). The trusted cutoff is set fairly high so that
incomplete sequences will score between suggested and
trusted cutoff levels [Protein synthesis, Translation
factors].
Length = 426
Score = 29.4 bits (66), Expect = 3.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 150 QRVLNTGSPITVPVGRVTLGRI---MNVIGEPIDEKGDLKT--EHYLPIHREAP 198
Q V + TVPVGRV G + V+ EP G++K+ H+ I + P
Sbjct: 233 QDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEP 286
>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine
triphosphatases (GTPases). The Ras family of the Ras
superfamily includes classical N-Ras, H-Ras, and K-Ras,
as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG,
Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins.
Ras proteins regulate cell growth, proliferation and
differentiation. Ras is activated by guanine nucleotide
exchange factors (GEFs) that release GDP and allow GTP
binding. Many RasGEFs have been identified. These are
sequestered in the cytosol until activation by growth
factors triggers recruitment to the plasma membrane or
Golgi, where the GEF colocalizes with Ras. Active
GTP-bound Ras interacts with several effector proteins:
among the best characterized are the Raf kinases,
phosphatidylinositol 3-kinase (PI3K), RalGEFs and
NORE/MST1. Most Ras proteins contain a lipid
modification site at the C-terminus, with a typical
sequence motif CaaX, where a = an aliphatic amino acid
and X = any amino acid. Lipid binding is essential for
membrane attachment, a key feature of most Ras proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 160
Score = 28.6 bits (65), Expect = 3.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 228 KIGLFGGAGVGKTVLIMELINNV 250
K+ + G GVGK+ L + ++
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGE 23
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.6 bits (66), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
P +RGG I L G G GKT I +L A H
Sbjct: 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH 378
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 29.1 bits (66), Expect = 4.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 87 IGQVCQVIGAVVDVRFDE--------GLPPILTALEVVDHSVRLVLEVAQHMGEGVVR 136
+G V ++ +VD+ +E G P L +VD + + +GE VVR
Sbjct: 318 LGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVR 375
>gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein;
Provisional.
Length = 445
Score = 29.0 bits (65), Expect = 5.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHG 255
I LFG G GKT L+ ++ + ++ G
Sbjct: 144 IYLFGPEGSGKTHLMQAAVHALRESGG 170
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 29.1 bits (66), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 224 QRGGKIGLFGGAGVGKTVLIMELI 247
QRG KI L G G GKT L+ ++
Sbjct: 343 QRGDKIALIGPNGCGKTTLLKLML 366
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 28.8 bits (64), Expect = 5.8
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 5 RLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLS------RVSEYATSAAAT 58
R L R + S + +V +P RR P S S + +
Sbjct: 3 RSLLRTSRPNRALPSFPKSTLDVTVTTPVKGRRRLPTSWSSSLLPLAIAASAGSLAYLNQ 62
Query: 59 APPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQ 92
+ P+ SD+ GGK + EF KG V Q
Sbjct: 63 SNPSLCDSSDLDSRVGGKGSTEFVVKGEHKLVPQ 96
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 28.8 bits (64), Expect = 6.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 3 SRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPA 62
SR LSS S R SPS ++ N S+ + + + +SP SR + + ++ P
Sbjct: 73 SRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSR---SRRTTSSDLSSGNGPSV 129
Query: 63 QTPKSDVKKG 72
+ +DVK+G
Sbjct: 130 LSFMADVKRG 139
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 28.0 bits (63), Expect = 6.7
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLY 274
+V L P RGG L G G GK+ L ++L VA F G G LY
Sbjct: 25 LVKGLLP--RGGLTLLAGAPGTGKSTLALDLAAAVATGRP----FLG-PFPVEPGRVLY 76
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 28.1 bits (63), Expect = 6.7
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
IGL GG G GK+ + L + F V
Sbjct: 2 IGLTGGIGSGKSTVANYLADK-----YHFPVI 28
>gnl|CDD|223025 PHA03253, PHA03253, UL35; Provisional.
Length = 609
Score = 28.8 bits (64), Expect = 7.2
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 4 RRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQ 63
RL + RSS R SPS S+ ++ +SP + R++P L R + S +++ +Q
Sbjct: 457 ERLNVNEGRSSSRASPSHST--STIPYSPPQSGRSTPTSILRQRTPIRSNSRSSSVSFSQ 514
>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization
(Ras-dva) family. Ras-dva subfamily. Ras-dva (Ras -
dorsal-ventral anterior localization) subfamily consists
of a set of proteins characterized only in Xenopus
leavis, to date. In Xenopus Ras-dva expression is
activated by the transcription factor Otx2 and begins
during gastrulation throughout the anterior ectoderm.
Ras-dva expression is inhibited in the anterior neural
plate by factor Xanf1. Downregulation of Ras-dva results
in head development abnormalities through the inhibition
of several regulators of the anterior neural plate and
folds patterning, including Otx2, BF-1, Xag2, Pax6,
Slug, and Sox9. Downregulation of Ras-dva also
interferes with the FGF-8a signaling within the anterior
ectoderm. Most Ras proteins contain a lipid modification
site at the C-terminus, with a typical sequence motif
CaaX, where a = an aliphatic amino acid and X = any
amino acid. Lipid binding is essential for membrane
attachment, a key feature of most Ras proteins.
Length = 197
Score = 27.9 bits (62), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ G AGVGKT LI + +
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYD 22
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 28.6 bits (64), Expect = 8.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263
G +IGL G G GK+ LI L +A G + G+
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI 375
>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit
beta; Validated.
Length = 282
Score = 28.0 bits (63), Expect = 9.4
Identities = 5/18 (27%), Positives = 15/18 (83%)
Query: 266 RTREGNDLYREMIESGVI 283
RT++G +++ + +E+G++
Sbjct: 223 RTKKGEEIFNKAVEAGLL 240
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 28.4 bits (64), Expect = 9.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 233 GGAGVGKTVLIMELINNVAKAHG--------GFSVFA 261
AGVGKT++ +I+ VA A G GF F
Sbjct: 324 KSAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFV 360
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.5 bits (61), Expect = 9.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
L+G G GKT L + N + + G
Sbjct: 24 LYGPPGTGKTTLARAIANELFRP--GAPFLY 52
>gnl|CDD|217639 pfam03612, EIIBC-GUT_N, Sorbitol phosphotransferase enzyme II
N-terminus.
Length = 182
Score = 27.6 bits (62), Expect = 9.7
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 48 VSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEG 105
+A+ TAP +T KK IT++ G + ++ +G VV V F G
Sbjct: 125 APVEPEAASETAPKIKTTYDTSKK-----ITEQSDKGGLLAKIGMGMGKVVAVFFQAG 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.377
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,749,831
Number of extensions: 2192455
Number of successful extensions: 2669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2519
Number of HSP's successfully gapped: 136
Length of query: 428
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 328
Effective length of database: 6,502,202
Effective search space: 2132722256
Effective search space used: 2132722256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.3 bits)