RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014228
(428 letters)
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 337 bits (865), Expect = e-115
Identities = 223/259 (86%), Positives = 235/259 (90%), Gaps = 2/259 (0%)
Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
I +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ+ILVTGIKVVD
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
LLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EMI
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120
Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
ESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIF
Sbjct: 121 ESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 178
Query: 339 RFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398
RFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQAIYVPADDLTD
Sbjct: 179 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTD 238
Query: 399 PAPATTFAHLDATTVLSRQ 417
PAPATTFAHLDATTVLSR
Sbjct: 239 PAPATTFAHLDATTVLSRA 257
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 301 bits (772), Expect = e-101
Identities = 62/270 (22%), Positives = 119/270 (44%), Gaps = 20/270 (7%)
Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
+ VPVG LGR+++ +G ID KG + ++ + +AP + + + ++ + TGIK VD
Sbjct: 1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVD 60
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------FSVFAGVGERTREGN 271
L P RG + + G GKT + ++ I N + + G + ++ +G++
Sbjct: 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 120
Query: 272 DLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVL 331
L + + ++ +K +V ++ + +G ++ E+FRD G+ L
Sbjct: 121 QLVKRLTDADAMK--------YTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHAL 171
Query: 332 LFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK----GSITSVQ 387
+ D++ + A ++S LL R P Y + L ER GS+T++
Sbjct: 172 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALP 231
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
I A D++ P + D L +
Sbjct: 232 VIETQAGDVSAYIPTNVISITDGQIFLETE 261
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 246 bits (629), Expect = 5e-80
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 14/261 (5%)
Query: 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLL 220
+PV LGR++N + +PID +G++ I AP + + + + L TG+ +D +
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61
Query: 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280
P RG + + G GKT + + I N + V+ +G++ + E
Sbjct: 62 IPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQER 120
Query: 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
G ++ +V + P + TG +AE+F + L+ D++ +
Sbjct: 121 GAME--------YTIVVAETADSPATLQYLAPYTGAALAEYFMY-RERHTLIIYDDLSKQ 171
Query: 341 TQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK----GSITSVQAIYVPADDL 396
QA ++S LL R P Y + L ER GS+T++ + A D+
Sbjct: 172 AQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDV 231
Query: 397 TDPAPATTFAHLDATTVLSRQ 417
+ P + D LS
Sbjct: 232 SAYIPTNVISITDGQIFLSAD 252
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 156 bits (395), Expect = 4e-45
Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 19/235 (8%)
Query: 188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247
E+ P+H + +E+ +V+DL +P RG + + GKT+L+ +
Sbjct: 6 ENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 64
Query: 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307
++A H + + + E + +++ V V +EP
Sbjct: 65 QSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV--------------VASTFDEPASR 110
Query: 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATD 367
+V + A+ + +DV++ +D+I R +A + V G++ + G
Sbjct: 111 HVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHR 168
Query: 368 LGGLQER-ITTTKKGSITSVQAIYVPADDLTDPAPATTF-AHLDATTVLSRQVRM 420
+ GS+T + + D F + LSR++
Sbjct: 169 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 223
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 72
Score = 110 bits (277), Expect = 1e-30
Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 2 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 61
Query: 148 RGQRVLNTGSP 158
RGQ+VL++G+P
Sbjct: 62 RGQKVLDSGAP 72
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 79
Score = 103 bits (260), Expect = 3e-28
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 87 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAM 140
+G++ Q+IG V++V F G +P I AL V + + EV Q +G VR +AM
Sbjct: 2 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAM 61
Query: 141 DGTEGLVRGQRVLNTGSP 158
T+GL RG V++TG+P
Sbjct: 62 SATDGLTRGMEVIDTGAP 79
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 82
Score = 100 bits (252), Expect = 6e-27
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 8/79 (10%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEV-------VDHSVRLVLEVAQHMGEGVVRTIA 139
G+V QV+G VVDV+F+ G LP I AL++ + + L LEVA H+G+ VRTIA
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 140 MDGTEGLVRGQRVLNTGSP 158
M T+GL+RG V++TG+P
Sbjct: 64 MASTDGLIRGMEVIDTGAP 82
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.4 bits (80), Expect = 0.008
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 202 EQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
+Q + L T +D L + G G GKT ++ + N+ F
Sbjct: 8 KQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYD 67
Query: 260 FAGVGERTREG 270
V +
Sbjct: 68 EEAVSKGEVAQ 78
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.4 bits (77), Expect = 0.019
Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 3/137 (2%)
Query: 212 TGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269
TG K +D L + G +FG GKT + L E
Sbjct: 7 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 66
Query: 270 GNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD 329
G E + + + G +D + Y + + + E D
Sbjct: 67 GTF-RPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125
Query: 330 VLLFIDNIFRFTQANSE 346
+ +
Sbjct: 126 SATALYRTDYSGRGELS 142
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.9 bits (71), Expect = 0.077
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++G+ G A GK+ LI +
Sbjct: 7 RLGVLGDARSGKSSLIHRFLTG 28
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 31.6 bits (70), Expect = 0.083
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G VGK+ L ++ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEG 27
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.089
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 227 GKIGLFGGAGVGKTVLIMELINN 249
GK+ G GKT L+ L N+
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKND 23
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 32.2 bits (72), Expect = 0.10
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILV---TGIKVVDLLAPYQRGGK-IGLFGGAGVG 238
G+ + R V +++ + V + P + + + G G G
Sbjct: 4 GEFGGAPFKRFLRGT-RIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTG 62
Query: 239 KTVLIMELINNVAKAHGGFSVFAGVGERTR 268
K+VL+ EL + G+
Sbjct: 63 KSVLLRELAYTGLLRGDRMVIVDPNGDMLS 92
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.9 bits (71), Expect = 0.11
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 212 TGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269
T I+ D G + G +G GKT+ ++ + N VF E ++
Sbjct: 10 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD 69
Query: 270 GNDLYREMIESGV 282
+ + G
Sbjct: 70 ---IIKNARSFGW 79
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.6 bits (70), Expect = 0.12
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + GG GVGK+ L ++ I +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQS 29
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.5 bits (70), Expect = 0.12
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ +FG GVGK+ L++ +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKG 25
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 31.5 bits (70), Expect = 0.13
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249
P K + G VGKT L+M N+
Sbjct: 5 PGALMLKCVVVGDGAVGKTCLLMSYAND 32
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 31.1 bits (69), Expect = 0.13
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G GVGK+ ++ + +
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVED 27
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.2 bits (69), Expect = 0.13
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G G GKT + +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTG 26
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.1 bits (69), Expect = 0.14
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ +FG AGVGK+ L++ +
Sbjct: 4 KLAIFGRAGVGKSALVVRFLTK 25
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 31.2 bits (69), Expect = 0.14
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249
V+ L Y++ GK+ G GKT L+ L ++
Sbjct: 2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 36
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.5 bits (70), Expect = 0.14
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268
+L G L G GK++L ++L +A V
Sbjct: 22 VLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVI 71
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.1 bits (69), Expect = 0.15
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G VGKT L++ N
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCEN 26
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.2 bits (69), Expect = 0.15
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G A VGK+ +++ ++N
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSN 26
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.2 bits (69), Expect = 0.15
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ + GG GVGK+ L ++ I +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQS 28
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 31.1 bits (69), Expect = 0.15
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GKT L++ +
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKD 25
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 31.1 bits (69), Expect = 0.16
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++LI N
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQN 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 31.1 bits (69), Expect = 0.16
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G VGKT L++ N
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTN 26
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 31.2 bits (69), Expect = 0.16
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G + GKT L+ +
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKD 25
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 30.8 bits (68), Expect = 0.17
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQK 27
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.8 bits (68), Expect = 0.17
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G +GVGKT L+ +N+
Sbjct: 4 KVIILGDSGVGKTSLMHRYVND 25
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.5 bits (70), Expect = 0.18
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 210 LVTGIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
L +G ++ + G I + G+G+GK+ + + A
Sbjct: 18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.8 bits (68), Expect = 0.18
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G +GVGKT L+ + +N
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNK 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.19
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++ +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTG 26
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.8 bits (68), Expect = 0.19
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G VGK+ +I
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKG 25
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.20
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++ +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQG 26
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 30.7 bits (68), Expect = 0.20
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++ + +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYD 27
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.5 bits (67), Expect = 0.22
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ L G GVGK+ L
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGV 26
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 30.9 bits (69), Expect = 0.26
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 215 KVVDLLAPY-----QRGGK----IGLFGGAGVGKTVLIMELINNVAKAHGG 256
++ L Y + G K I G G GK+ +++ N++ + +GG
Sbjct: 7 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.4 bits (67), Expect = 0.26
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G + VGK+ L++ +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKG 29
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 30.3 bits (67), Expect = 0.26
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ G VGKT LI + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYD 23
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.5 bits (67), Expect = 0.27
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G GVGK+ L
Sbjct: 3 KVLLLGAPGVGKSALARIFGGV 24
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.4 bits (67), Expect = 0.28
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G VGKT L++ N
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTN 28
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.5 bits (67), Expect = 0.33
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 197 APAFVEQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
A F + +E L TG K +D L + G LFG GK+ L L
Sbjct: 3 AADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 62
Query: 255 GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
EG + S + G D+ + Y +
Sbjct: 63 DIGGGEGKCLYIDTEG-TFRPVRLVSIAQRFGLDPDDALNNVAYARAY 109
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.0 bits (66), Expect = 0.33
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 228 KIGLFGGAGVGKTVLIMEL 246
+ + GG GK+VL+ +L
Sbjct: 9 TVAILGGESSGKSVLVNKL 27
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.9 bits (66), Expect = 0.33
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G AG GK+ L+ + I
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEK 28
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.8 bits (66), Expect = 0.36
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G GVGK+ L+ +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEK 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.38
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G + VGKT L
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAG 25
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.3 bits (67), Expect = 0.42
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 203 QATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
Q + + +G+ +D + + + I G G GKT+L+ + N +F
Sbjct: 1 QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 60
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.8 bits (66), Expect = 0.43
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGK+ L+ N
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRN 27
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.8 bits (66), Expect = 0.44
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGKT L++ +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDG 29
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.1 bits (66), Expect = 0.44
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 202 EQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
E+ + TG + D L + FG GKT L L G
Sbjct: 11 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 70
Query: 260 FAGVGERTREGNDLYREM 277
+ E +
Sbjct: 71 GGKIIFIDTENTFRPDRL 88
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.8 bits (66), Expect = 0.45
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G +GVGK+ L++ ++
Sbjct: 9 KILIIGESGVGKSSLLLRFTDD 30
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.5 bits (65), Expect = 0.47
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G GVGK+ L+++ +
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDK 26
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.8 bits (66), Expect = 0.48
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGK+ L++ ++
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDD 29
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.5 bits (65), Expect = 0.48
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ G +GVGKT + +N
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDN 28
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.1 bits (66), Expect = 0.48
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
R + G GK+ +I IN + + + D E+ +
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 82
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 29.5 bits (65), Expect = 0.50
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G GVGK+ L+ + N
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTN 29
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 0.53
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
+I + G GKT ++ +L
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG 23
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.4 bits (65), Expect = 0.54
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI L G AGVGKT L+
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQG 28
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 29.8 bits (66), Expect = 0.56
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 215 KVVDLL--APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
+V+ L + L G AG GK+V+ + ++ + G
Sbjct: 31 RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN 75
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.3 bits (65), Expect = 0.59
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGKT ++ +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSED 29
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.0 bits (64), Expect = 0.67
Identities = 17/126 (13%), Positives = 26/126 (20%), Gaps = 16/126 (12%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT----REGNDLYR-------EM 277
+ G GKT L+ + + + G EG D R
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63
Query: 278 IESG-----VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
G + +Y + R E L
Sbjct: 64 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASLQ 123
Query: 333 FIDNIF 338
+ NI
Sbjct: 124 HLANIR 129
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 29.3 bits (64), Expect = 0.80
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 220 LAPYQR------GGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
L P Q+ G + GAG GKT +I I ++ + G
Sbjct: 2 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG 43
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.4 bits (65), Expect = 0.83
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQILVTGI-KVVDLLAPYQRGG-KIGLFGGAGVGKTV 241
T + I +E +E + + D L + + G G GK+
Sbjct: 13 KFNTGRKI-ISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 71
Query: 242 LIMELINNVAKAHGGFSVFAGVGERTRE 269
I L + G + GV E T E
Sbjct: 72 FINTLRGIGNEEEG--AAKTGVVEVTME 97
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.8 bits (63), Expect = 0.85
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
KI + G GVGKT L+ +++ + K GF
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWT 33
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.8 bits (63), Expect = 0.94
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
+ L G GVGKT LI + + + F
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.6 bits (63), Expect = 0.96
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI L G +GVGK+ L++ + +
Sbjct: 4 KILLIGDSGVGKSCLLVRFVED 25
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.1 bits (62), Expect = 1.2
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 204 ATEQQILVTGIKVVDLLAPY--QRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
E +L G K ++L ++ + L G G GKT L ++ +
Sbjct: 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGN 62
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 115
Score = 27.5 bits (61), Expect = 1.2
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGG 256
IG+ GG G T + I A
Sbjct: 3 TIGILGGMGPLATAELFRRIVIKTPAKRD 31
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.2 bits (61), Expect = 1.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 224 QRGGKIGLFGGAGVGKTVLIMELIN 248
G + + G VGK+ L+ L+
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLG 27
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.0 bits (61), Expect = 1.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249
L + + +I L G GKT L+ +L +
Sbjct: 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.3 bits (62), Expect = 1.8
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 215 KVVDLLAPYQ-RGGKIGLFGGAGVGKTVLIMELI 247
+++D + PY ++G+ G G GK+ +
Sbjct: 42 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 75
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.8 bits (60), Expect = 1.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 226 GGKIGLFGGAGVGKTVLIMELIN 248
G K+ + G GK+ L+ L
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAG 23
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 27.6 bits (60), Expect = 2.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249
+ D L + +I + G G GKT ++ L
Sbjct: 6 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 40
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
+G I + G G GKT + + A GF
Sbjct: 4 KGINILITGTPGTGKTSMAEMI----AAELDGFQHL 35
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 2.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
+I + G GKT ++ +L
Sbjct: 14 RILMLGLDAAGKTTILYKLKLG 35
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 3.3
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 197 APAFVEQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
A ++++ + TG K +D L + +FG G GKT L L V
Sbjct: 5 ADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 64
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 3.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
+ G GKT+L + L+
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTG 23
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.4 bits (60), Expect = 3.7
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 175 IGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK----IG 230
I E + + ++ E YLP+ R ++ +Q + L G + I
Sbjct: 34 INEDLSLE-EVA-EIYLPLSRLLNFYISSNLRRQA-----VLEQFLG--TNGQRIPYIIS 84
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSV 259
+ G VGK+ L +++ V
Sbjct: 85 IAGSVAVGKSTTARVLQALLSRWPEHRRV 113
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 3.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 215 KVVDLLAPYQ-RGGKIGLFGGAGVGKTVLIMELI 247
++D + P R ++G+ G GVGK+ I L
Sbjct: 39 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 72
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.0 bits (59), Expect = 4.1
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249
Y+ ++ L G GK+ ++ ++
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL 29
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 4.4
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269
+ +G GK+ LI L+ SV TR+
Sbjct: 7 VSAPSGAGKSSLIQALLKTQPLYDTQVSVSH----TTRQ 41
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
{Helicobacter pylori [TaxId: 210]}
Length = 221
Score = 26.8 bits (59), Expect = 4.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQ----ILVTGIKVVDLLAPYQ 224
E+ +EH P+ P + QA + IL I+V D L PY
Sbjct: 1 ERMKTSSEHVTPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYI 48
>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 25.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 76 KITDEFTGKGAIGQVCQVIGAVVDVRFDE 104
+I +E GK + +VIG V DV D
Sbjct: 3 RIVEEMVGKEVLDSSAKVIGKVKDVEVDI 31
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
meningitidis [TaxId: 487]}
Length = 155
Score = 26.2 bits (57), Expect = 6.2
Identities = 4/48 (8%), Positives = 15/48 (31%)
Query: 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
+ + + + GA + ++L + + + + G
Sbjct: 66 ASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTG 113
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 26.0 bits (56), Expect = 8.3
Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 6/35 (17%)
Query: 311 VGLTGL------TVAEHFRDAEGQDVLLFIDNIFR 339
+ L+G+ T A+ I
Sbjct: 4 IFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.377
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,532
Number of extensions: 68725
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 89
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)